Query 001058
Match_columns 1170
No_of_seqs 403 out of 1329
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 14:40:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0998 Synaptic vesicle prote 100.0 1.8E-37 3.9E-42 375.6 35.2 545 1-751 48-600 (847)
2 KOG1029 Endocytic adaptor prot 100.0 3.3E-29 7E-34 290.7 36.8 100 382-484 185-284 (1118)
3 KOG1029 Endocytic adaptor prot 99.9 1.3E-20 2.7E-25 220.1 32.5 91 382-474 6-96 (1118)
4 PF12763 EF-hand_4: Cytoskelet 99.8 6.4E-20 1.4E-24 174.6 6.9 92 385-477 2-95 (104)
5 KOG1955 Ral-GTPase effector RA 99.7 1.4E-16 3.1E-21 180.7 17.8 101 375-476 214-314 (737)
6 smart00027 EH Eps15 homology d 99.6 7.6E-16 1.7E-20 142.2 11.2 93 383-476 1-93 (96)
7 KOG0998 Synaptic vesicle prote 99.5 4.3E-13 9.3E-18 164.7 24.7 123 351-479 90-216 (847)
8 cd00052 EH Eps15 homology doma 99.0 7.5E-10 1.6E-14 93.8 8.1 67 395-461 1-67 (67)
9 PF00038 Filament: Intermediat 99.0 2.4E-08 5.1E-13 109.3 18.9 136 544-684 171-307 (312)
10 KOG1954 Endocytosis/signaling 99.0 8E-10 1.7E-14 124.5 7.2 96 379-477 432-527 (532)
11 PF13499 EF-hand_7: EF-hand do 98.9 4.6E-09 1E-13 89.9 6.6 60 394-453 1-66 (66)
12 cd05022 S-100A13 S-100A13: S-1 98.8 8.7E-09 1.9E-13 96.3 8.5 73 390-462 5-82 (89)
13 KOG0027 Calmodulin and related 98.7 1.9E-08 4.1E-13 100.0 7.5 64 391-454 83-148 (151)
14 COG5126 FRQ1 Ca2+-binding prot 98.7 2.1E-08 4.5E-13 103.0 7.2 64 390-453 89-154 (160)
15 KOG0027 Calmodulin and related 98.7 7.1E-08 1.5E-12 95.9 9.2 72 387-458 2-75 (151)
16 cd05027 S-100B S-100B: S-100B 98.6 1.6E-07 3.4E-12 87.4 9.6 69 391-459 6-83 (88)
17 cd05025 S-100A1 S-100A1: S-100 98.6 1.3E-07 2.9E-12 87.1 9.0 71 392-462 8-87 (92)
18 cd05026 S-100Z S-100Z: S-100Z 98.6 1.9E-07 4.1E-12 87.2 9.5 70 391-460 8-86 (93)
19 cd05029 S-100A6 S-100A6: S-100 98.6 2.1E-07 4.6E-12 86.5 9.3 69 391-459 8-83 (88)
20 cd00213 S-100 S-100: S-100 dom 98.6 2.2E-07 4.8E-12 84.4 8.9 69 389-457 4-81 (88)
21 cd05031 S-100A10_like S-100A10 98.6 2.8E-07 6E-12 85.4 9.4 70 391-460 6-84 (94)
22 PTZ00183 centrin; Provisional 98.5 6.3E-07 1.4E-11 86.9 9.7 70 386-455 10-81 (158)
23 cd05023 S-100A11 S-100A11: S-1 98.5 7.6E-07 1.6E-11 83.1 9.3 71 390-460 6-85 (89)
24 PTZ00184 calmodulin; Provision 98.4 8.5E-07 1.9E-11 84.5 9.5 71 386-456 4-76 (149)
25 PRK11637 AmiB activator; Provi 98.4 1.4E-05 3E-10 92.3 20.7 14 890-903 365-378 (428)
26 COG5126 FRQ1 Ca2+-binding prot 98.3 1.5E-06 3.4E-11 89.5 8.9 72 386-458 13-86 (160)
27 cd00051 EFh EF-hand, calcium b 98.3 1.9E-06 4.1E-11 69.0 7.2 59 395-453 2-62 (63)
28 PRK09039 hypothetical protein; 98.3 2.2E-05 4.7E-10 89.2 17.9 67 618-686 118-184 (343)
29 cd00252 SPARC_EC SPARC_EC; ext 98.2 3.4E-06 7.4E-11 82.7 8.4 64 388-453 43-106 (116)
30 KOG0977 Nuclear envelope prote 98.2 6.9E-06 1.5E-10 97.5 12.1 120 565-686 247-389 (546)
31 PRK09039 hypothetical protein; 98.2 4E-05 8.6E-10 87.1 17.4 100 565-664 79-185 (343)
32 PF13833 EF-hand_8: EF-hand do 98.2 2.8E-06 6.2E-11 70.7 5.7 49 406-454 1-52 (54)
33 PTZ00183 centrin; Provisional 98.2 6.1E-06 1.3E-10 80.1 8.4 61 393-453 90-152 (158)
34 TIGR02169 SMC_prok_A chromosom 98.2 0.00011 2.4E-09 92.3 21.4 18 639-656 429-446 (1164)
35 cd05030 calgranulins Calgranul 98.1 8.8E-06 1.9E-10 75.4 8.5 70 390-459 5-83 (88)
36 PF00038 Filament: Intermediat 98.1 0.00017 3.8E-09 79.4 19.9 113 567-684 169-290 (312)
37 KOG0028 Ca2+-binding protein ( 98.1 5.7E-06 1.2E-10 85.3 7.7 64 391-454 104-169 (172)
38 PF08317 Spc7: Spc7 kinetochor 98.1 0.00026 5.5E-09 79.8 20.8 33 681-713 276-308 (325)
39 COG1579 Zn-ribbon protein, pos 98.1 0.00017 3.7E-09 78.8 18.7 121 544-664 22-144 (239)
40 PTZ00184 calmodulin; Provision 98.1 9.5E-06 2.1E-10 77.4 8.2 62 392-453 83-146 (149)
41 KOG0041 Predicted Ca2+-binding 98.1 5.5E-06 1.2E-10 88.0 7.0 78 380-463 88-168 (244)
42 PF09726 Macoilin: Transmembra 98.1 0.0002 4.4E-09 88.1 20.3 57 552-608 459-515 (697)
43 PF08317 Spc7: Spc7 kinetochor 98.0 0.00058 1.3E-08 77.0 21.7 12 441-452 11-22 (325)
44 KOG0250 DNA repair protein RAD 98.0 0.00019 4.2E-09 90.0 19.1 32 389-420 161-192 (1074)
45 PF12718 Tropomyosin_1: Tropom 98.0 0.00033 7.1E-09 71.1 17.5 133 559-693 6-141 (143)
46 KOG0034 Ca2+/calmodulin-depend 98.0 1.6E-05 3.4E-10 83.8 8.3 64 393-456 104-176 (187)
47 KOG0028 Ca2+-binding protein ( 98.0 1.5E-05 3.2E-10 82.4 7.6 72 386-460 26-99 (172)
48 smart00787 Spc7 Spc7 kinetocho 98.0 0.00075 1.6E-08 76.3 21.0 83 614-706 209-296 (312)
49 COG1340 Uncharacterized archae 98.0 0.00058 1.3E-08 76.4 19.7 122 563-684 154-275 (294)
50 KOG0250 DNA repair protein RAD 98.0 0.00043 9.3E-09 87.0 20.6 38 592-629 327-364 (1074)
51 PF12718 Tropomyosin_1: Tropom 97.9 0.00047 1E-08 70.0 17.2 118 567-686 21-141 (143)
52 PF14658 EF-hand_9: EF-hand do 97.9 2.5E-05 5.3E-10 70.4 6.4 59 397-455 2-64 (66)
53 PHA02562 46 endonuclease subun 97.9 0.00076 1.7E-08 79.5 20.3 71 621-693 328-398 (562)
54 KOG0971 Microtubule-associated 97.9 0.00038 8.2E-09 85.7 17.9 125 561-687 333-475 (1243)
55 COG1579 Zn-ribbon protein, pos 97.9 0.00059 1.3E-08 74.7 17.6 101 564-664 28-137 (239)
56 TIGR01843 type_I_hlyD type I s 97.9 0.00066 1.4E-08 76.4 18.3 72 623-695 196-267 (423)
57 PRK02224 chromosome segregatio 97.8 0.00097 2.1E-08 83.0 21.2 34 630-663 606-639 (880)
58 PRK03918 chromosome segregatio 97.8 0.0009 1.9E-08 83.0 20.5 15 723-737 748-762 (880)
59 PHA02562 46 endonuclease subun 97.8 0.0015 3.2E-08 77.1 20.3 67 597-663 215-281 (562)
60 PF09726 Macoilin: Transmembra 97.8 0.00059 1.3E-08 84.1 17.5 38 575-612 461-498 (697)
61 COG1196 Smc Chromosome segrega 97.7 0.0014 3.1E-08 84.7 21.1 16 671-686 888-903 (1163)
62 PRK04863 mukB cell division pr 97.7 0.0015 3.2E-08 86.2 21.3 130 596-726 356-507 (1486)
63 PRK04863 mukB cell division pr 97.7 0.0014 3E-08 86.4 20.6 122 565-689 305-426 (1486)
64 COG1196 Smc Chromosome segrega 97.7 0.0019 4.1E-08 83.5 21.1 10 466-475 569-578 (1163)
65 PF15070 GOLGA2L5: Putative go 97.7 0.0032 6.9E-08 76.9 21.7 24 644-667 160-183 (617)
66 PF10186 Atg14: UV radiation r 97.7 0.0017 3.8E-08 70.1 17.7 24 569-592 22-45 (302)
67 KOG0977 Nuclear envelope prote 97.7 0.002 4.3E-08 77.4 19.2 114 551-664 90-217 (546)
68 COG4942 Membrane-bound metallo 97.7 0.0022 4.7E-08 75.0 19.0 71 554-624 39-109 (420)
69 PF04849 HAP1_N: HAP1 N-termin 97.7 0.0014 3E-08 73.9 16.8 119 573-696 180-298 (306)
70 PF13851 GAS: Growth-arrest sp 97.7 0.0045 9.8E-08 66.1 19.9 150 545-701 12-177 (201)
71 TIGR01843 type_I_hlyD type I s 97.7 0.0033 7.1E-08 70.9 20.0 82 614-701 194-276 (423)
72 PRK02224 chromosome segregatio 97.7 0.0026 5.6E-08 79.4 20.7 12 630-641 627-638 (880)
73 PF07888 CALCOCO1: Calcium bin 97.6 0.0038 8.2E-08 75.0 20.7 15 670-684 286-300 (546)
74 KOG0037 Ca2+-binding protein, 97.6 0.00016 3.5E-09 77.8 8.5 64 392-455 123-188 (221)
75 KOG0031 Myosin regulatory ligh 97.6 0.00017 3.7E-09 74.4 7.8 62 392-453 100-163 (171)
76 PF06008 Laminin_I: Laminin Do 97.6 0.0045 9.7E-08 67.7 18.7 135 561-695 60-206 (264)
77 PF12128 DUF3584: Protein of u 97.6 0.0043 9.3E-08 80.7 21.6 106 596-704 679-801 (1201)
78 TIGR01005 eps_transp_fam exopo 97.6 0.0025 5.3E-08 78.6 18.5 57 532-588 161-222 (754)
79 KOG0377 Protein serine/threoni 97.6 0.00017 3.6E-09 83.7 7.8 68 393-460 547-620 (631)
80 PF10168 Nup88: Nuclear pore c 97.6 0.0051 1.1E-07 76.4 21.0 151 545-698 546-716 (717)
81 TIGR03017 EpsF chain length de 97.6 0.0049 1.1E-07 71.1 19.7 54 535-588 141-199 (444)
82 PF04111 APG6: Autophagy prote 97.5 0.0004 8.6E-09 78.3 10.6 85 569-654 11-95 (314)
83 PF00261 Tropomyosin: Tropomyo 97.5 0.005 1.1E-07 66.7 18.5 118 577-696 88-219 (237)
84 KOG0995 Centromere-associated 97.5 0.0044 9.5E-08 74.3 18.9 68 565-632 257-324 (581)
85 KOG0031 Myosin regulatory ligh 97.5 0.00031 6.7E-09 72.6 8.3 74 384-464 23-98 (171)
86 PLN02964 phosphatidylserine de 97.5 0.00021 4.5E-09 87.1 8.2 72 379-454 129-206 (644)
87 PRK09841 cryptic autophosphory 97.5 0.0037 8.1E-08 77.3 18.7 163 533-701 235-404 (726)
88 COG3883 Uncharacterized protei 97.5 0.004 8.7E-08 69.2 16.8 17 645-661 149-165 (265)
89 TIGR03007 pepcterm_ChnLen poly 97.5 0.0062 1.3E-07 71.5 19.5 53 536-588 132-189 (498)
90 KOG0030 Myosin essential light 97.5 0.00025 5.4E-09 72.2 6.8 73 387-459 5-81 (152)
91 TIGR00606 rad50 rad50. This fa 97.4 0.0058 1.3E-07 80.1 20.6 13 886-899 1149-1162(1311)
92 PRK04778 septation ring format 97.4 0.0037 7.9E-08 75.5 17.4 61 565-625 280-340 (569)
93 PF10473 CENP-F_leu_zip: Leuci 97.4 0.0078 1.7E-07 61.5 17.0 95 567-661 24-118 (140)
94 KOG0980 Actin-binding protein 97.4 0.005 1.1E-07 76.4 18.4 27 576-602 381-407 (980)
95 PF12763 EF-hand_4: Cytoskelet 97.4 2.4E-05 5.2E-10 75.6 -0.9 34 1-34 46-79 (104)
96 PRK11519 tyrosine kinase; Prov 97.4 0.0058 1.3E-07 75.6 19.2 163 533-701 235-404 (719)
97 KOG0996 Structural maintenance 97.4 0.0066 1.4E-07 77.2 19.4 123 577-699 380-504 (1293)
98 KOG0971 Microtubule-associated 97.4 0.0054 1.2E-07 76.1 18.2 131 552-686 282-436 (1243)
99 TIGR03007 pepcterm_ChnLen poly 97.4 0.0036 7.8E-08 73.4 16.5 26 670-695 358-383 (498)
100 KOG0030 Myosin essential light 97.4 0.00033 7.1E-09 71.4 6.6 59 392-451 87-147 (152)
101 KOG0161 Myosin class II heavy 97.4 0.012 2.6E-07 79.0 22.4 25 427-451 770-794 (1930)
102 KOG0999 Microtubule-associated 97.4 0.0078 1.7E-07 71.7 18.5 104 564-667 47-179 (772)
103 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.4 0.0047 1E-07 61.6 14.5 16 671-686 102-117 (132)
104 KOG0161 Myosin class II heavy 97.4 0.0072 1.6E-07 81.0 20.2 24 561-584 958-981 (1930)
105 PF04156 IncA: IncA protein; 97.4 0.0073 1.6E-07 62.6 16.4 55 565-619 86-140 (191)
106 PF05667 DUF812: Protein of un 97.4 0.012 2.7E-07 71.7 20.7 128 560-687 328-460 (594)
107 PF00261 Tropomyosin: Tropomyo 97.4 0.0044 9.6E-08 67.1 15.2 67 590-656 80-146 (237)
108 KOG0980 Actin-binding protein 97.4 0.01 2.2E-07 73.8 19.8 54 590-643 412-465 (980)
109 COG1340 Uncharacterized archae 97.3 0.0079 1.7E-07 67.7 17.3 73 560-632 20-92 (294)
110 PF07888 CALCOCO1: Calcium bin 97.3 0.029 6.3E-07 67.7 23.0 31 565-595 169-199 (546)
111 cd05024 S-100A10 S-100A10: A s 97.3 0.0014 3E-08 62.6 9.7 69 391-460 6-81 (91)
112 PF12761 End3: Actin cytoskele 97.3 0.0018 4E-08 69.0 11.7 93 552-650 98-194 (195)
113 PLN02964 phosphatidylserine de 97.3 0.00059 1.3E-08 83.3 9.2 69 387-455 173-243 (644)
114 PF04156 IncA: IncA protein; 97.3 0.0048 1E-07 63.9 14.6 32 568-599 82-113 (191)
115 TIGR02680 conserved hypothetic 97.3 0.0098 2.1E-07 78.4 20.5 105 592-698 280-392 (1353)
116 KOG0804 Cytoplasmic Zn-finger 97.3 0.0047 1E-07 72.3 15.5 17 386-402 85-101 (493)
117 KOG0996 Structural maintenance 97.3 0.0068 1.5E-07 77.1 17.9 85 577-661 436-524 (1293)
118 PF12128 DUF3584: Protein of u 97.3 0.013 2.8E-07 76.5 21.1 31 671-701 740-770 (1201)
119 PF15397 DUF4618: Domain of un 97.3 0.024 5.1E-07 63.1 20.1 69 555-626 68-137 (258)
120 KOG0044 Ca2+ sensor (EF-Hand s 97.3 0.00035 7.5E-09 74.3 5.8 63 393-455 100-175 (193)
121 KOG0994 Extracellular matrix g 97.3 0.015 3.2E-07 73.7 20.2 37 658-696 1710-1746(1758)
122 TIGR01010 BexC_CtrB_KpsE polys 97.3 0.0033 7.1E-08 71.2 13.8 129 565-695 175-306 (362)
123 PF04111 APG6: Autophagy prote 97.3 0.01 2.2E-07 67.2 17.6 103 601-703 70-195 (314)
124 KOG0963 Transcription factor/C 97.3 0.0069 1.5E-07 73.2 16.7 118 604-725 237-371 (629)
125 TIGR01005 eps_transp_fam exopo 97.3 0.0089 1.9E-07 73.9 18.1 30 670-699 379-408 (754)
126 KOG0978 E3 ubiquitin ligase in 97.2 0.025 5.4E-07 69.9 21.3 67 618-686 554-620 (698)
127 PRK11281 hypothetical protein; 97.2 0.0043 9.2E-08 80.0 15.6 25 671-695 231-255 (1113)
128 KOG0964 Structural maintenance 97.2 0.015 3.2E-07 73.1 19.1 122 561-684 266-428 (1200)
129 PF12325 TMF_TATA_bd: TATA ele 97.2 0.011 2.4E-07 59.0 14.8 94 565-659 21-118 (120)
130 PRK12704 phosphodiesterase; Pr 97.2 0.023 4.9E-07 68.5 20.1 27 688-714 192-221 (520)
131 PF14662 CCDC155: Coiled-coil 97.2 0.036 7.8E-07 59.3 19.2 95 569-667 31-125 (193)
132 KOG4674 Uncharacterized conser 97.2 0.011 2.4E-07 78.4 18.5 26 671-696 1357-1382(1822)
133 smart00787 Spc7 Spc7 kinetocho 97.2 0.04 8.6E-07 62.7 20.8 58 631-690 205-262 (312)
134 PF15070 GOLGA2L5: Putative go 97.2 0.019 4.1E-07 70.4 19.5 108 577-686 90-214 (617)
135 COG4372 Uncharacterized protei 97.2 0.042 9.1E-07 63.7 20.9 9 535-543 72-80 (499)
136 COG3883 Uncharacterized protei 97.2 0.054 1.2E-06 60.5 21.2 31 634-664 173-203 (265)
137 PF15619 Lebercilin: Ciliary p 97.2 0.04 8.7E-07 58.9 19.5 133 560-697 12-148 (194)
138 KOG0044 Ca2+ sensor (EF-Hand s 97.1 0.0011 2.3E-08 70.8 7.4 71 392-462 63-135 (193)
139 TIGR03319 YmdA_YtgF conserved 97.1 0.029 6.3E-07 67.5 20.1 27 688-714 186-215 (514)
140 KOG2991 Splicing regulator [RN 97.1 0.033 7.2E-07 61.7 18.7 126 573-698 142-309 (330)
141 PRK04778 septation ring format 97.1 0.016 3.6E-07 70.0 18.0 53 577-629 285-337 (569)
142 KOG0933 Structural maintenance 97.1 0.03 6.4E-07 70.7 20.2 52 613-664 805-856 (1174)
143 TIGR01000 bacteriocin_acc bact 97.1 0.041 9E-07 64.6 20.8 27 671-697 288-314 (457)
144 TIGR00634 recN DNA repair prot 97.1 0.017 3.6E-07 69.7 18.0 68 630-697 301-376 (563)
145 PF12795 MscS_porin: Mechanose 97.1 0.02 4.4E-07 62.0 16.9 55 642-696 155-214 (240)
146 PF10186 Atg14: UV radiation r 97.1 0.023 5.1E-07 61.6 17.4 50 591-640 59-108 (302)
147 PF09789 DUF2353: Uncharacteri 97.1 0.026 5.6E-07 64.4 18.2 87 602-690 72-177 (319)
148 PF10174 Cast: RIM-binding pro 97.1 0.029 6.3E-07 70.3 20.3 120 567-695 287-413 (775)
149 KOG4360 Uncharacterized coiled 97.1 0.01 2.3E-07 70.3 15.4 40 645-686 262-301 (596)
150 PF05701 WEMBL: Weak chloropla 97.1 0.044 9.5E-07 66.0 20.9 86 601-686 294-384 (522)
151 PRK12309 transaldolase/EF-hand 97.1 0.0012 2.7E-08 76.6 7.7 56 392-458 333-388 (391)
152 PF11932 DUF3450: Protein of u 97.1 0.036 7.9E-07 60.5 18.4 54 609-662 63-116 (251)
153 KOG4643 Uncharacterized coiled 97.0 0.014 3E-07 73.4 16.7 131 552-686 183-313 (1195)
154 PF04012 PspA_IM30: PspA/IM30 97.0 0.074 1.6E-06 56.6 20.1 82 606-687 88-178 (221)
155 PF10481 CENP-F_N: Cenp-F N-te 97.0 0.019 4E-07 64.1 15.8 95 565-659 16-117 (307)
156 PRK00106 hypothetical protein; 97.0 0.044 9.5E-07 66.3 20.0 26 689-714 208-236 (535)
157 KOG4302 Microtubule-associated 97.0 0.027 5.9E-07 69.3 18.4 21 685-705 185-205 (660)
158 PF05701 WEMBL: Weak chloropla 97.0 0.039 8.5E-07 66.4 19.3 8 673-680 399-406 (522)
159 KOG0046 Ca2+-binding actin-bun 97.0 0.0018 4E-08 76.7 8.0 68 386-454 12-84 (627)
160 PF13851 GAS: Growth-arrest sp 96.9 0.04 8.6E-07 59.1 17.2 89 576-664 29-120 (201)
161 PF00036 EF-hand_1: EF hand; 96.9 0.00077 1.7E-08 51.6 3.0 27 428-454 1-27 (29)
162 TIGR02680 conserved hypothetic 96.9 0.063 1.4E-06 71.1 22.0 118 582-701 277-402 (1353)
163 PRK10929 putative mechanosensi 96.9 0.026 5.7E-07 73.0 17.8 56 641-696 177-237 (1109)
164 COG4372 Uncharacterized protei 96.9 0.13 2.9E-06 59.8 21.4 57 565-621 135-191 (499)
165 PRK01156 chromosome segregatio 96.9 0.03 6.5E-07 70.5 18.1 15 672-686 714-728 (895)
166 PLN02939 transferase, transfer 96.9 0.021 4.6E-07 72.7 16.6 87 542-628 145-252 (977)
167 TIGR02977 phageshock_pspA phag 96.9 0.17 3.7E-06 54.5 21.2 80 608-687 91-179 (219)
168 PF11559 ADIP: Afadin- and alp 96.8 0.053 1.2E-06 54.9 16.4 94 585-690 56-149 (151)
169 PF10146 zf-C4H2: Zinc finger- 96.8 0.012 2.6E-07 64.4 12.4 73 612-700 35-108 (230)
170 KOG0979 Structural maintenance 96.8 0.068 1.5E-06 67.8 20.0 41 544-588 183-223 (1072)
171 PF13870 DUF4201: Domain of un 96.8 0.16 3.5E-06 52.8 19.8 52 613-664 81-132 (177)
172 PF13514 AAA_27: AAA domain 96.8 0.076 1.7E-06 68.9 21.3 61 626-686 892-952 (1111)
173 PF07111 HCR: Alpha helical co 96.8 0.031 6.8E-07 68.5 16.6 123 571-697 475-605 (739)
174 PF08614 ATG16: Autophagy prot 96.8 0.0093 2E-07 62.9 10.9 10 567-576 88-97 (194)
175 KOG0933 Structural maintenance 96.8 0.061 1.3E-06 68.1 19.3 86 577-662 790-875 (1174)
176 PF15619 Lebercilin: Ciliary p 96.8 0.13 2.9E-06 55.1 19.5 92 570-661 57-149 (194)
177 PRK10869 recombination and rep 96.8 0.049 1.1E-06 66.0 18.2 54 645-698 318-372 (553)
178 PF13870 DUF4201: Domain of un 96.8 0.03 6.5E-07 58.1 14.3 94 613-706 46-144 (177)
179 KOG4673 Transcription factor T 96.8 0.08 1.7E-06 64.8 19.3 14 437-450 245-258 (961)
180 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.8 0.048 1E-06 54.6 15.0 24 672-695 96-119 (132)
181 PF06818 Fez1: Fez1; InterPro 96.7 0.073 1.6E-06 57.5 17.1 90 567-656 17-106 (202)
182 PF09789 DUF2353: Uncharacteri 96.7 0.056 1.2E-06 61.8 17.1 134 545-687 71-216 (319)
183 KOG0037 Ca2+-binding protein, 96.7 0.0087 1.9E-07 64.9 10.2 70 392-461 56-128 (221)
184 KOG0964 Structural maintenance 96.7 0.038 8.3E-07 69.6 16.8 111 589-701 259-383 (1200)
185 KOG1853 LIS1-interacting prote 96.7 0.13 2.8E-06 57.2 19.0 52 613-664 70-125 (333)
186 PF09730 BicD: Microtubule-ass 96.7 0.092 2E-06 65.5 20.0 126 565-700 32-176 (717)
187 PF10473 CENP-F_leu_zip: Leuci 96.7 0.13 2.9E-06 52.8 17.8 28 567-594 10-37 (140)
188 COG2433 Uncharacterized conser 96.7 0.042 9E-07 66.7 16.4 25 671-695 485-509 (652)
189 KOG4673 Transcription factor T 96.7 0.08 1.7E-06 64.8 18.7 135 565-701 407-571 (961)
190 PF05667 DUF812: Protein of un 96.6 0.17 3.6E-06 62.2 21.4 72 627-698 444-520 (594)
191 PF15397 DUF4618: Domain of un 96.6 0.14 3E-06 57.2 18.7 28 561-588 82-109 (258)
192 TIGR03185 DNA_S_dndD DNA sulfu 96.6 0.054 1.2E-06 66.4 17.2 44 617-660 422-465 (650)
193 PF00036 EF-hand_1: EF hand; 96.6 0.002 4.4E-08 49.3 3.3 27 394-420 1-27 (29)
194 PF15066 CAGE1: Cancer-associa 96.6 0.19 4.1E-06 59.7 20.5 63 631-695 447-513 (527)
195 KOG1853 LIS1-interacting prote 96.6 0.15 3.3E-06 56.7 18.6 87 609-704 91-187 (333)
196 PF05010 TACC: Transforming ac 96.6 0.26 5.7E-06 53.5 20.2 29 670-698 178-206 (207)
197 KOG4807 F-actin binding protei 96.6 0.16 3.5E-06 59.1 19.3 55 608-662 420-474 (593)
198 KOG0994 Extracellular matrix g 96.6 0.16 3.4E-06 65.2 20.4 43 642-686 1659-1701(1758)
199 COG5185 HEC1 Protein involved 96.6 0.11 2.4E-06 61.5 18.2 75 558-632 286-360 (622)
200 KOG2129 Uncharacterized conser 96.5 0.1 2.2E-06 61.0 17.4 18 612-629 182-199 (552)
201 PF11932 DUF3450: Protein of u 96.5 0.26 5.7E-06 53.9 19.9 57 565-621 40-96 (251)
202 PF04949 Transcrip_act: Transc 96.5 0.16 3.5E-06 52.7 16.7 75 613-689 81-156 (159)
203 PRK10698 phage shock protein P 96.5 0.4 8.7E-06 52.2 20.7 48 613-660 96-143 (222)
204 KOG0995 Centromere-associated 96.4 0.073 1.6E-06 64.3 16.1 99 538-640 217-325 (581)
205 COG4942 Membrane-bound metallo 96.4 0.12 2.5E-06 61.1 17.4 18 886-903 350-370 (420)
206 PF10498 IFT57: Intra-flagella 96.4 0.1 2.3E-06 60.5 17.0 102 551-662 218-319 (359)
207 PF14662 CCDC155: Coiled-coil 96.4 0.48 1E-05 51.1 20.4 16 549-564 21-36 (193)
208 PF13405 EF-hand_6: EF-hand do 96.4 0.0031 6.6E-08 48.0 3.2 27 394-420 1-27 (31)
209 KOG4674 Uncharacterized conser 96.4 0.11 2.3E-06 69.7 18.8 53 574-626 1278-1331(1822)
210 KOG0976 Rho/Rac1-interacting s 96.4 0.097 2.1E-06 64.9 16.9 95 567-661 99-200 (1265)
211 KOG0036 Predicted mitochondria 96.4 0.012 2.6E-07 68.6 9.0 73 387-459 8-83 (463)
212 PF04849 HAP1_N: HAP1 N-termin 96.4 0.11 2.3E-06 59.2 16.2 33 386-419 34-68 (306)
213 PF06785 UPF0242: Uncharacteri 96.4 0.22 4.9E-06 57.1 18.5 54 611-664 136-189 (401)
214 TIGR03185 DNA_S_dndD DNA sulfu 96.4 0.11 2.5E-06 63.7 17.8 11 685-695 506-516 (650)
215 PF12325 TMF_TATA_bd: TATA ele 96.4 0.097 2.1E-06 52.5 14.1 92 596-696 24-118 (120)
216 COG4717 Uncharacterized conser 96.3 0.12 2.6E-06 64.9 17.6 31 559-589 619-649 (984)
217 PF14915 CCDC144C: CCDC144C pr 96.3 0.33 7.1E-06 55.2 19.6 116 576-693 139-254 (305)
218 PF13514 AAA_27: AAA domain 96.3 0.15 3.2E-06 66.4 19.4 29 670-698 299-327 (1111)
219 COG2433 Uncharacterized conser 96.3 0.075 1.6E-06 64.6 15.4 25 688-712 531-555 (652)
220 KOG0018 Structural maintenance 96.3 0.13 2.8E-06 65.7 18.1 100 539-639 649-755 (1141)
221 KOG0036 Predicted mitochondria 96.3 0.0085 1.8E-07 69.8 7.2 66 390-455 79-146 (463)
222 KOG0982 Centrosomal protein Nu 96.3 0.18 4E-06 59.3 17.7 67 638-706 333-399 (502)
223 TIGR01000 bacteriocin_acc bact 96.3 0.14 3.1E-06 60.2 17.4 21 675-695 237-257 (457)
224 PRK11281 hypothetical protein; 96.3 0.16 3.5E-06 66.1 19.2 43 552-594 134-176 (1113)
225 KOG3478 Prefoldin subunit 6, K 96.3 0.12 2.6E-06 51.4 13.8 96 565-664 3-110 (120)
226 PF06160 EzrA: Septation ring 96.3 0.34 7.4E-06 59.0 20.9 115 577-695 97-215 (560)
227 PF10174 Cast: RIM-binding pro 96.3 0.28 6.1E-06 61.9 20.6 78 617-695 379-457 (775)
228 PRK03947 prefoldin subunit alp 96.3 0.097 2.1E-06 52.4 13.7 36 567-602 6-41 (140)
229 KOG0979 Structural maintenance 96.3 0.12 2.7E-06 65.6 17.4 58 565-622 274-331 (1072)
230 COG1842 PspA Phage shock prote 96.3 0.24 5.2E-06 54.3 17.7 116 544-661 29-144 (225)
231 PRK15178 Vi polysaccharide exp 96.2 0.083 1.8E-06 62.6 15.2 126 565-695 247-383 (434)
232 KOG0804 Cytoplasmic Zn-finger 96.2 0.13 2.7E-06 60.9 16.3 7 277-283 24-30 (493)
233 PF07106 TBPIP: Tat binding pr 96.2 0.073 1.6E-06 54.9 13.1 93 602-695 72-166 (169)
234 PRK10884 SH3 domain-containing 96.2 0.053 1.1E-06 58.6 12.4 40 613-652 129-168 (206)
235 KOG0999 Microtubule-associated 96.2 0.18 3.9E-06 60.8 17.6 151 565-725 105-283 (772)
236 KOG0038 Ca2+-binding kinase in 96.2 0.0061 1.3E-07 63.0 5.1 62 394-458 109-177 (189)
237 KOG4643 Uncharacterized coiled 96.2 0.29 6.3E-06 62.3 20.1 68 591-658 491-558 (1195)
238 PF14915 CCDC144C: CCDC144C pr 96.2 0.4 8.6E-06 54.5 19.4 68 559-626 30-101 (305)
239 PRK10476 multidrug resistance 96.2 0.13 2.9E-06 58.0 16.1 26 633-658 155-180 (346)
240 TIGR02971 heterocyst_DevB ABC 96.2 0.22 4.8E-06 55.5 17.6 25 674-698 179-203 (327)
241 PF12252 SidE: Dot/Icm substra 96.2 0.18 4E-06 64.2 18.2 134 566-706 1062-1236(1439)
242 KOG0946 ER-Golgi vesicle-tethe 96.2 0.14 2.9E-06 64.0 16.9 20 269-288 342-362 (970)
243 PF09730 BicD: Microtubule-ass 96.2 0.17 3.6E-06 63.3 17.9 48 639-686 99-147 (717)
244 PF09304 Cortex-I_coil: Cortex 96.2 0.18 4E-06 49.8 14.6 86 565-664 7-92 (107)
245 KOG4302 Microtubule-associated 96.2 0.12 2.5E-06 64.0 16.3 36 607-642 101-136 (660)
246 KOG4223 Reticulocalbin, calume 96.1 0.0061 1.3E-07 69.1 5.1 66 379-450 233-300 (325)
247 PF05278 PEARLI-4: Arabidopsis 96.1 0.12 2.5E-06 58.0 14.8 95 582-686 167-261 (269)
248 PRK09841 cryptic autophosphory 96.1 0.13 2.8E-06 64.2 16.8 126 577-702 263-401 (726)
249 PF03148 Tektin: Tektin family 96.1 0.43 9.3E-06 55.7 20.0 70 567-636 229-299 (384)
250 KOG0040 Ca2+-binding actin-bun 96.1 0.0099 2.1E-07 76.7 7.1 68 386-453 2246-2322(2399)
251 PF09731 Mitofilin: Mitochondr 96.1 0.64 1.4E-05 56.3 22.0 26 707-733 454-480 (582)
252 PF06008 Laminin_I: Laminin Do 96.1 0.22 4.7E-06 54.9 16.5 72 566-637 44-115 (264)
253 PF06120 Phage_HK97_TLTM: Tail 96.1 0.12 2.6E-06 58.8 14.7 41 646-688 129-169 (301)
254 TIGR02338 gimC_beta prefoldin, 96.1 0.14 3E-06 49.9 13.3 34 569-602 5-38 (110)
255 PF11559 ADIP: Afadin- and alp 96.1 0.15 3.2E-06 51.7 14.0 48 614-661 71-118 (151)
256 PF10475 DUF2450: Protein of u 96.1 0.4 8.7E-06 53.6 18.6 68 630-697 125-195 (291)
257 PF08580 KAR9: Yeast cortical 96.0 0.22 4.8E-06 62.1 18.0 110 592-704 221-347 (683)
258 PF00769 ERM: Ezrin/radixin/mo 96.0 0.16 3.5E-06 56.0 15.2 46 642-696 80-125 (246)
259 PF06160 EzrA: Septation ring 96.0 0.14 3E-06 62.3 16.0 25 671-695 404-428 (560)
260 KOG0976 Rho/Rac1-interacting s 96.0 0.34 7.3E-06 60.5 18.8 26 565-590 111-136 (1265)
261 COG5185 HEC1 Protein involved 96.0 0.23 5.1E-06 59.0 16.9 68 577-644 291-358 (622)
262 COG0497 RecN ATPase involved i 96.0 0.52 1.1E-05 57.6 20.3 54 645-698 319-373 (557)
263 PRK09343 prefoldin subunit bet 96.0 0.2 4.3E-06 49.9 14.1 36 567-602 7-42 (121)
264 cd00632 Prefoldin_beta Prefold 96.0 0.14 3E-06 49.3 12.6 31 572-602 4-34 (105)
265 KOG0978 E3 ubiquitin ligase in 95.9 0.31 6.6E-06 60.7 18.4 72 613-684 563-645 (698)
266 KOG0612 Rho-associated, coiled 95.9 0.22 4.8E-06 64.4 17.5 22 429-450 312-336 (1317)
267 TIGR00634 recN DNA repair prot 95.9 0.29 6.4E-06 59.3 18.1 49 644-701 346-395 (563)
268 KOG0963 Transcription factor/C 95.9 0.44 9.4E-06 58.4 19.2 90 611-700 176-268 (629)
269 PF10168 Nup88: Nuclear pore c 95.9 0.094 2E-06 65.5 14.3 14 270-291 244-257 (717)
270 KOG0946 ER-Golgi vesicle-tethe 95.9 0.11 2.4E-06 64.7 14.4 49 613-661 682-730 (970)
271 KOG0612 Rho-associated, coiled 95.9 0.21 4.5E-06 64.6 17.2 80 556-635 612-693 (1317)
272 KOG0243 Kinesin-like protein [ 95.9 0.44 9.6E-06 61.3 20.0 27 393-419 166-200 (1041)
273 KOG2129 Uncharacterized conser 95.9 0.19 4.1E-06 59.0 15.4 141 567-708 165-326 (552)
274 PF10146 zf-C4H2: Zinc finger- 95.9 0.11 2.5E-06 57.0 13.2 22 641-662 50-71 (230)
275 PF01576 Myosin_tail_1: Myosin 95.9 0.0021 4.5E-08 81.0 0.0 118 565-684 382-506 (859)
276 KOG0243 Kinesin-like protein [ 95.9 0.21 4.6E-06 64.0 17.2 25 267-291 79-107 (1041)
277 PF05911 DUF869: Plant protein 95.9 0.52 1.1E-05 59.5 20.4 68 630-697 673-756 (769)
278 KOG3091 Nuclear pore complex, 95.9 0.15 3.3E-06 60.9 14.8 88 565-656 360-447 (508)
279 PF12072 DUF3552: Domain of un 95.9 0.72 1.6E-05 49.4 18.7 13 572-584 58-70 (201)
280 TIGR02977 phageshock_pspA phag 95.8 0.39 8.5E-06 51.8 16.8 38 630-667 99-136 (219)
281 PRK11519 tyrosine kinase; Prov 95.8 0.24 5.1E-06 61.8 17.2 123 578-700 264-399 (719)
282 PF09731 Mitofilin: Mitochondr 95.8 0.49 1.1E-05 57.3 19.4 23 673-695 377-399 (582)
283 KOG0288 WD40 repeat protein Ti 95.8 0.089 1.9E-06 61.6 12.4 6 898-903 244-249 (459)
284 PF10591 SPARC_Ca_bdg: Secrete 95.8 0.0041 8.8E-08 60.9 1.6 62 390-451 51-112 (113)
285 PF04582 Reo_sigmaC: Reovirus 95.8 0.007 1.5E-07 68.9 3.7 124 561-687 29-153 (326)
286 COG3206 GumC Uncharacterized p 95.8 0.26 5.6E-06 58.0 16.4 44 618-661 287-330 (458)
287 PF09755 DUF2046: Uncharacteri 95.8 0.45 9.7E-06 54.4 17.4 52 613-664 117-169 (310)
288 PF05010 TACC: Transforming ac 95.7 1.1 2.3E-05 49.0 19.3 29 607-635 81-109 (207)
289 KOG4593 Mitotic checkpoint pro 95.7 0.71 1.5E-05 57.3 19.9 23 670-692 278-300 (716)
290 PF13805 Pil1: Eisosome compon 95.7 0.77 1.7E-05 51.8 18.7 113 591-703 85-220 (271)
291 PRK10698 phage shock protein P 95.7 0.5 1.1E-05 51.5 17.0 86 597-687 94-179 (222)
292 PF05911 DUF869: Plant protein 95.7 0.31 6.7E-06 61.5 17.3 88 568-662 604-691 (769)
293 PF13202 EF-hand_5: EF hand; P 95.7 0.012 2.5E-07 43.8 3.2 25 395-419 1-25 (25)
294 KOG2685 Cystoskeletal protein 95.7 0.51 1.1E-05 55.6 17.8 113 565-679 254-391 (421)
295 PF06818 Fez1: Fez1; InterPro 95.7 0.45 9.7E-06 51.7 16.2 59 550-608 21-79 (202)
296 PF10481 CENP-F_N: Cenp-F N-te 95.6 0.67 1.5E-05 52.2 17.8 102 561-662 33-134 (307)
297 PRK12704 phosphodiesterase; Pr 95.6 1.1 2.5E-05 54.4 21.3 8 716-723 197-204 (520)
298 PRK10884 SH3 domain-containing 95.6 0.11 2.4E-06 56.1 11.7 8 571-578 97-104 (206)
299 TIGR03017 EpsF chain length de 95.6 0.64 1.4E-05 54.0 18.7 25 670-694 345-369 (444)
300 PF07798 DUF1640: Protein of u 95.6 1.2 2.6E-05 46.8 18.9 23 604-626 75-97 (177)
301 KOG4460 Nuclear pore complex, 95.6 0.48 1E-05 57.3 17.5 129 564-696 585-731 (741)
302 PF09787 Golgin_A5: Golgin sub 95.6 0.54 1.2E-05 56.7 18.5 64 591-654 235-312 (511)
303 PF09755 DUF2046: Uncharacteri 95.6 1.2 2.6E-05 51.1 20.0 11 611-621 86-96 (310)
304 PF14988 DUF4515: Domain of un 95.6 2.1 4.6E-05 46.5 21.1 65 555-619 34-102 (206)
305 PF09787 Golgin_A5: Golgin sub 95.6 0.38 8.2E-06 57.9 17.1 87 559-645 213-310 (511)
306 PF12795 MscS_porin: Mechanose 95.6 1 2.2E-05 49.2 18.8 53 610-662 86-138 (240)
307 PRK10361 DNA recombination pro 95.6 1.2 2.5E-05 53.8 20.7 42 645-686 141-184 (475)
308 KOG4572 Predicted DNA-binding 95.6 0.57 1.2E-05 58.6 18.3 72 577-650 964-1036(1424)
309 PF05483 SCP-1: Synaptonemal c 95.5 0.73 1.6E-05 57.1 19.0 94 571-664 517-614 (786)
310 PF10212 TTKRSYEDQ: Predicted 95.5 0.22 4.7E-06 60.1 14.5 90 565-657 418-514 (518)
311 PRK00409 recombination and DNA 95.5 0.41 8.9E-06 60.6 17.7 46 643-688 576-621 (782)
312 PF07111 HCR: Alpha helical co 95.5 1.1 2.3E-05 55.9 20.4 115 548-662 483-614 (739)
313 KOG0288 WD40 repeat protein Ti 95.5 0.26 5.7E-06 57.9 14.7 56 565-620 25-80 (459)
314 TIGR01010 BexC_CtrB_KpsE polys 95.5 0.81 1.8E-05 52.3 18.6 86 567-657 170-262 (362)
315 TIGR03319 YmdA_YtgF conserved 95.5 1.6 3.5E-05 53.1 21.8 8 716-723 191-198 (514)
316 PRK10361 DNA recombination pro 95.5 1.7 3.8E-05 52.4 21.8 19 671-689 144-162 (475)
317 KOG0239 Kinesin (KAR3 subfamil 95.5 0.35 7.6E-06 60.3 16.6 30 632-661 243-272 (670)
318 TIGR03794 NHPM_micro_HlyD NHPM 95.4 0.75 1.6E-05 53.6 18.4 24 674-697 227-250 (421)
319 PF15290 Syntaphilin: Golgi-lo 95.4 0.24 5.2E-06 55.8 13.6 55 632-691 110-166 (305)
320 cd00176 SPEC Spectrin repeats, 95.4 0.8 1.7E-05 45.8 16.3 58 639-696 148-208 (213)
321 KOG4593 Mitotic checkpoint pro 95.4 0.54 1.2E-05 58.3 17.6 125 561-687 378-516 (716)
322 PF09728 Taxilin: Myosin-like 95.4 1.4 3E-05 50.5 19.8 62 630-693 244-305 (309)
323 COG0419 SbcC ATPase involved i 95.4 1.1 2.3E-05 57.5 21.0 6 414-419 144-149 (908)
324 PF02050 FliJ: Flagellar FliJ 95.4 1.2 2.5E-05 41.6 16.2 35 591-625 48-82 (123)
325 PF05622 HOOK: HOOK protein; 95.4 0.0043 9.2E-08 76.7 0.0 20 609-628 308-327 (713)
326 PRK03947 prefoldin subunit alp 95.4 0.34 7.5E-06 48.5 13.4 30 565-594 11-40 (140)
327 PRK00106 hypothetical protein; 95.3 2.6 5.7E-05 51.6 22.9 9 716-724 212-220 (535)
328 KOG4403 Cell surface glycoprot 95.3 0.96 2.1E-05 53.6 18.3 28 392-419 67-94 (575)
329 COG1730 GIM5 Predicted prefold 95.3 0.66 1.4E-05 48.1 15.2 35 567-601 6-40 (145)
330 PF08581 Tup_N: Tup N-terminal 95.2 0.16 3.5E-06 47.7 9.8 68 613-685 8-75 (79)
331 COG1842 PspA Phage shock prote 95.2 0.78 1.7E-05 50.5 16.6 17 567-583 31-47 (225)
332 KOG1003 Actin filament-coating 95.2 2.1 4.6E-05 46.5 19.2 45 597-641 55-99 (205)
333 PF09304 Cortex-I_coil: Cortex 95.2 0.36 7.9E-06 47.8 12.5 83 611-693 18-105 (107)
334 PRK10246 exonuclease subunit S 95.2 1 2.2E-05 58.8 20.2 27 673-699 737-763 (1047)
335 KOG2751 Beclin-like protein [S 95.2 0.44 9.6E-06 56.3 15.4 120 565-686 141-265 (447)
336 PRK12705 hypothetical protein; 95.2 1.5 3.3E-05 53.3 20.4 32 688-719 180-214 (508)
337 COG4913 Uncharacterized protei 95.2 1.3 2.8E-05 55.4 19.6 44 687-737 450-493 (1104)
338 TIGR01541 tape_meas_lam_C phag 95.2 0.29 6.4E-06 56.3 13.7 49 676-726 114-162 (332)
339 PRK03598 putative efflux pump 95.2 0.56 1.2E-05 52.7 15.7 55 639-697 147-201 (331)
340 PF15254 CCDC14: Coiled-coil d 95.1 0.97 2.1E-05 56.7 18.5 68 594-661 486-553 (861)
341 KOG4223 Reticulocalbin, calume 95.1 0.039 8.3E-07 62.9 6.4 65 393-457 163-230 (325)
342 KOG2751 Beclin-like protein [S 95.1 1.1 2.5E-05 53.1 18.2 154 589-747 198-386 (447)
343 PRK10246 exonuclease subunit S 95.1 2 4.4E-05 56.1 22.4 31 631-661 778-808 (1047)
344 KOG1899 LAR transmembrane tyro 95.1 0.56 1.2E-05 57.5 15.9 119 568-693 140-264 (861)
345 PF01920 Prefoldin_2: Prefoldi 95.0 0.37 8.1E-06 45.2 11.8 33 621-653 67-99 (106)
346 PF06120 Phage_HK97_TLTM: Tail 95.0 1.3 2.8E-05 50.7 18.1 43 605-647 130-172 (301)
347 KOG0034 Ca2+/calmodulin-depend 95.0 0.054 1.2E-06 57.7 6.9 67 386-455 26-95 (187)
348 PF15272 BBP1_C: Spindle pole 95.0 1.2 2.7E-05 48.2 16.9 107 620-729 69-184 (196)
349 PRK10476 multidrug resistance 95.0 0.71 1.5E-05 52.3 16.0 6 696-701 208-213 (346)
350 PF12072 DUF3552: Domain of un 95.0 3.9 8.4E-05 43.9 20.6 10 567-576 38-47 (201)
351 COG4477 EzrA Negative regulato 95.0 0.79 1.7E-05 55.6 16.8 32 633-664 378-409 (570)
352 COG4717 Uncharacterized conser 95.0 2.2 4.7E-05 54.4 20.9 55 630-684 774-828 (984)
353 PTZ00464 SNF-7-like protein; P 94.9 2.2 4.8E-05 46.6 18.7 19 565-583 30-48 (211)
354 KOG1850 Myosin-like coiled-coi 94.9 1.9 4.2E-05 49.7 18.7 29 656-686 206-234 (391)
355 smart00502 BBC B-Box C-termina 94.9 2.8 6.2E-05 39.6 17.4 25 635-659 77-101 (127)
356 PF05557 MAD: Mitotic checkpoi 94.9 0.22 4.7E-06 62.1 12.6 53 643-695 565-627 (722)
357 KOG1103 Predicted coiled-coil 94.9 0.84 1.8E-05 52.8 16.0 55 643-699 244-298 (561)
358 PF05622 HOOK: HOOK protein; 94.9 0.0074 1.6E-07 74.6 0.0 72 613-686 329-403 (713)
359 KOG0239 Kinesin (KAR3 subfamil 94.9 0.52 1.1E-05 58.8 15.6 98 592-695 224-321 (670)
360 KOG1937 Uncharacterized conser 94.8 1.4 3E-05 52.6 18.0 25 671-695 386-414 (521)
361 PF06248 Zw10: Centromere/kine 94.8 0.78 1.7E-05 56.0 16.9 61 603-664 77-142 (593)
362 PRK10929 putative mechanosensi 94.8 1.8 4E-05 56.9 20.8 28 671-698 283-310 (1109)
363 KOG0240 Kinesin (SMY1 subfamil 94.8 1.1 2.5E-05 54.6 17.6 89 622-710 462-557 (607)
364 PF13166 AAA_13: AAA domain 94.8 1.2 2.7E-05 54.7 18.5 16 440-455 177-192 (712)
365 PRK10869 recombination and rep 94.8 0.47 1E-05 57.8 14.8 44 554-597 158-201 (553)
366 KOG1003 Actin filament-coating 94.7 2.7 5.8E-05 45.8 18.3 22 641-662 113-134 (205)
367 COG0497 RecN ATPase involved i 94.7 0.95 2.1E-05 55.4 16.9 25 676-700 365-390 (557)
368 PF10267 Tmemb_cc2: Predicted 94.7 0.61 1.3E-05 55.0 14.9 16 642-657 303-318 (395)
369 PF06785 UPF0242: Uncharacteri 94.7 1.1 2.5E-05 51.6 16.4 27 630-656 148-174 (401)
370 cd07653 F-BAR_CIP4-like The F- 94.7 6.9 0.00015 42.5 21.9 24 393-419 5-28 (251)
371 COG3206 GumC Uncharacterized p 94.7 1.4 3.1E-05 52.0 18.1 20 645-664 343-362 (458)
372 COG4026 Uncharacterized protei 94.7 0.18 3.9E-06 55.3 9.7 63 602-664 142-204 (290)
373 COG3096 MukB Uncharacterized p 94.7 2 4.4E-05 53.7 19.3 43 622-664 382-424 (1480)
374 KOG0042 Glycerol-3-phosphate d 94.7 0.059 1.3E-06 65.1 6.6 80 377-457 578-659 (680)
375 TIGR02231 conserved hypothetic 94.6 0.22 4.7E-06 59.7 11.3 98 565-665 76-173 (525)
376 COG5293 Predicted ATPase [Gene 94.6 0.7 1.5E-05 55.1 14.9 92 644-741 316-417 (591)
377 KOG4677 Golgi integral membran 94.6 0.51 1.1E-05 56.0 13.8 89 565-654 257-354 (554)
378 cd00890 Prefoldin Prefoldin is 94.6 0.53 1.2E-05 45.7 12.0 32 630-661 94-125 (129)
379 KOG0240 Kinesin (SMY1 subfamil 94.6 0.96 2.1E-05 55.2 16.3 86 614-701 412-504 (607)
380 PRK09343 prefoldin subunit bet 94.6 0.89 1.9E-05 45.4 13.7 30 572-601 5-34 (121)
381 PRK00286 xseA exodeoxyribonucl 94.6 1 2.2E-05 53.0 16.4 8 733-740 398-405 (438)
382 PF15294 Leu_zip: Leucine zipp 94.5 0.75 1.6E-05 52.1 14.5 123 565-690 144-276 (278)
383 PF07851 TMPIT: TMPIT-like pro 94.5 0.22 4.9E-06 57.3 10.7 85 567-658 4-89 (330)
384 PF13949 ALIX_LYPXL_bnd: ALIX 94.5 2.3 4.9E-05 47.0 18.1 43 583-625 24-66 (296)
385 PF01920 Prefoldin_2: Prefoldi 94.5 0.46 1E-05 44.6 11.1 33 632-664 7-39 (106)
386 TIGR02338 gimC_beta prefoldin, 94.5 0.62 1.3E-05 45.4 12.2 33 567-599 10-42 (110)
387 PLN03229 acetyl-coenzyme A car 94.5 3 6.4E-05 52.7 20.6 8 35-42 17-24 (762)
388 PF14992 TMCO5: TMCO5 family 94.5 0.4 8.8E-06 54.2 12.3 15 670-684 154-168 (280)
389 TIGR02473 flagell_FliJ flagell 94.5 1.2 2.7E-05 43.8 14.4 17 568-584 28-44 (141)
390 PF01576 Myosin_tail_1: Myosin 94.5 0.01 2.2E-07 75.1 0.0 45 610-654 265-309 (859)
391 PF09738 DUF2051: Double stran 94.5 2.2 4.8E-05 48.9 18.3 63 577-639 108-170 (302)
392 PF05266 DUF724: Protein of un 94.5 1.5 3.3E-05 47.1 16.0 49 630-687 131-179 (190)
393 cd00176 SPEC Spectrin repeats, 94.5 2.4 5.1E-05 42.5 16.6 30 613-642 76-105 (213)
394 PF09728 Taxilin: Myosin-like 94.5 1.3 2.9E-05 50.6 16.5 11 670-680 138-148 (309)
395 cd07648 F-BAR_FCHO The F-BAR ( 94.4 4.3 9.4E-05 44.7 19.8 26 638-663 117-142 (261)
396 TIGR03545 conserved hypothetic 94.4 1.1 2.4E-05 54.9 16.8 47 580-626 190-236 (555)
397 COG5283 Phage-related tail pro 94.4 1.2 2.6E-05 58.1 17.5 74 589-662 58-131 (1213)
398 PF13405 EF-hand_6: EF-hand do 94.3 0.042 9.1E-07 41.9 3.0 27 428-454 1-27 (31)
399 TIGR02231 conserved hypothetic 94.3 0.34 7.4E-06 58.1 12.1 15 672-686 157-171 (525)
400 PF13166 AAA_13: AAA domain 94.3 1.7 3.7E-05 53.5 18.3 132 567-700 322-474 (712)
401 COG4026 Uncharacterized protei 94.3 0.76 1.7E-05 50.6 13.4 43 615-657 134-176 (290)
402 PF02994 Transposase_22: L1 tr 94.3 0.046 9.9E-07 63.3 4.6 44 621-664 142-185 (370)
403 PF15035 Rootletin: Ciliary ro 94.3 0.5 1.1E-05 50.4 11.8 87 576-663 18-107 (182)
404 PF14362 DUF4407: Domain of un 94.3 0.89 1.9E-05 50.8 14.4 24 637-660 189-212 (301)
405 KOG3647 Predicted coiled-coil 94.3 2.8 6.2E-05 47.4 17.8 45 614-658 117-161 (338)
406 PRK14011 prefoldin subunit alp 94.2 0.99 2.1E-05 46.7 13.5 36 567-602 3-38 (144)
407 KOG2991 Splicing regulator [RN 94.2 2 4.4E-05 48.3 16.5 91 543-638 170-272 (330)
408 PF14282 FlxA: FlxA-like prote 94.2 0.18 4E-06 49.2 7.8 34 628-661 49-82 (106)
409 KOG0018 Structural maintenance 94.2 2.3 4.9E-05 55.2 19.0 17 702-718 489-505 (1141)
410 PF07106 TBPIP: Tat binding pr 94.2 0.24 5.2E-06 51.2 9.1 64 632-695 74-137 (169)
411 cd07653 F-BAR_CIP4-like The F- 94.2 3.3 7.1E-05 45.0 18.1 15 610-624 95-109 (251)
412 COG1730 GIM5 Predicted prefold 94.2 0.61 1.3E-05 48.3 11.9 42 643-686 93-134 (145)
413 KOG4065 Uncharacterized conser 94.2 0.1 2.3E-06 52.4 6.1 65 386-452 62-142 (144)
414 TIGR00998 8a0101 efflux pump m 94.2 0.98 2.1E-05 50.3 14.5 11 683-693 188-198 (334)
415 PF15254 CCDC14: Coiled-coil d 94.2 1.4 3.1E-05 55.3 16.8 79 611-691 464-549 (861)
416 PF10226 DUF2216: Uncharacteri 94.2 0.81 1.7E-05 49.3 12.9 88 589-695 42-129 (195)
417 cd07673 F-BAR_FCHO2 The F-BAR 94.1 3.6 7.8E-05 46.1 18.7 30 634-663 120-149 (269)
418 PF07200 Mod_r: Modifier of ru 94.1 6.4 0.00014 39.9 18.9 63 576-638 29-91 (150)
419 KOG2077 JNK/SAPK-associated pr 94.1 0.54 1.2E-05 57.1 12.8 88 575-662 295-382 (832)
420 PF13202 EF-hand_5: EF hand; P 94.1 0.047 1E-06 40.6 2.8 24 429-452 1-24 (25)
421 KOG0249 LAR-interacting protei 94.1 1.4 2.9E-05 55.1 16.2 45 596-640 217-261 (916)
422 KOG0962 DNA repair protein RAD 94.1 1.4 3E-05 58.2 17.1 46 621-666 883-928 (1294)
423 PF10498 IFT57: Intra-flagella 94.0 1.6 3.4E-05 51.0 16.2 91 574-664 220-314 (359)
424 KOG3215 Uncharacterized conser 94.0 3.1 6.8E-05 45.5 17.1 86 612-697 85-180 (222)
425 COG1382 GimC Prefoldin, chaper 94.0 0.68 1.5E-05 46.7 11.5 34 633-666 80-113 (119)
426 KOG4603 TBP-1 interacting prot 94.0 0.88 1.9E-05 48.5 12.7 77 619-700 119-200 (201)
427 KOG1899 LAR transmembrane tyro 94.0 0.44 9.6E-06 58.3 11.9 108 549-663 107-214 (861)
428 KOG2196 Nuclear porin [Nuclear 94.0 2.9 6.2E-05 46.7 17.0 87 537-627 69-159 (254)
429 TIGR03794 NHPM_micro_HlyD NHPM 93.9 2.5 5.4E-05 49.3 17.8 22 670-691 230-251 (421)
430 PF04871 Uso1_p115_C: Uso1 / p 93.9 1.1 2.3E-05 45.8 13.0 14 673-686 97-110 (136)
431 PF05384 DegS: Sensor protein 93.9 9.1 0.0002 40.5 19.9 35 553-587 20-54 (159)
432 PF14073 Cep57_CLD: Centrosome 93.9 2.9 6.4E-05 44.8 16.5 35 596-630 58-92 (178)
433 PF15066 CAGE1: Cancer-associa 93.9 3.9 8.5E-05 49.2 19.1 33 564-596 342-377 (527)
434 PF05700 BCAS2: Breast carcino 93.9 0.59 1.3E-05 50.8 11.8 28 637-664 175-202 (221)
435 smart00027 EH Eps15 homology d 93.9 0.031 6.8E-07 52.2 1.9 40 2-41 48-87 (96)
436 PF05335 DUF745: Protein of un 93.9 3.8 8.2E-05 44.2 17.5 17 671-687 155-171 (188)
437 KOG4360 Uncharacterized coiled 93.9 1.5 3.1E-05 53.1 15.6 126 565-693 164-294 (596)
438 PF03962 Mnd1: Mnd1 family; I 93.9 2.5 5.5E-05 45.2 16.1 27 567-593 69-95 (188)
439 TIGR02971 heterocyst_DevB ABC 93.8 3.7 8E-05 46.0 18.1 28 672-703 184-211 (327)
440 PRK05689 fliJ flagellar biosyn 93.8 3 6.5E-05 42.0 15.8 35 618-652 73-107 (147)
441 PF05483 SCP-1: Synaptonemal c 93.8 6.9 0.00015 49.0 21.3 69 594-662 498-566 (786)
442 PF05266 DUF724: Protein of un 93.8 1.2 2.6E-05 47.9 13.6 82 607-697 101-182 (190)
443 PF15556 Zwint: ZW10 interacto 93.8 2.5 5.4E-05 46.2 15.8 25 560-584 59-83 (252)
444 PF05546 She9_MDM33: She9 / Md 93.8 2.3 4.9E-05 46.6 15.7 50 610-666 33-82 (207)
445 PF13863 DUF4200: Domain of un 93.8 3.1 6.7E-05 40.7 15.5 38 624-661 68-105 (126)
446 PF05278 PEARLI-4: Arabidopsis 93.8 2.8 6.1E-05 47.5 16.9 51 612-662 203-253 (269)
447 KOG0579 Ste20-like serine/thre 93.8 4.5 9.7E-05 50.6 19.6 58 634-695 1084-1141(1187)
448 KOG4809 Rab6 GTPase-interactin 93.8 3.1 6.6E-05 50.8 18.0 144 550-693 331-497 (654)
449 PRK07720 fliJ flagellar biosyn 93.7 2.2 4.8E-05 43.1 14.8 22 567-588 30-51 (146)
450 TIGR00237 xseA exodeoxyribonuc 93.7 2 4.2E-05 51.1 16.5 7 733-739 393-399 (432)
451 PF00435 Spectrin: Spectrin re 93.7 1.1 2.4E-05 40.1 11.4 29 669-697 75-103 (105)
452 TIGR03752 conj_TIGR03752 integ 93.7 0.52 1.1E-05 56.5 11.7 16 919-934 346-361 (472)
453 PF14788 EF-hand_10: EF hand; 93.7 0.13 2.8E-06 44.9 5.1 47 409-455 1-49 (51)
454 COG2882 FliJ Flagellar biosynt 93.7 2.4 5.2E-05 44.3 15.0 36 567-602 16-51 (148)
455 cd07651 F-BAR_PombeCdc15_like 93.7 5.1 0.00011 43.6 18.3 56 635-695 155-210 (236)
456 TIGR00293 prefoldin, archaeal 93.6 0.56 1.2E-05 46.1 10.1 32 571-602 3-34 (126)
457 PF04108 APG17: Autophagy prot 93.6 4.8 0.0001 47.7 19.4 54 644-697 332-390 (412)
458 PF12126 DUF3583: Protein of u 93.6 1.2 2.5E-05 50.8 13.6 32 567-598 13-44 (324)
459 TIGR01069 mutS2 MutS2 family p 93.6 1 2.2E-05 57.0 14.8 40 643-688 571-610 (771)
460 KOG2391 Vacuolar sorting prote 93.6 3.5 7.5E-05 48.0 17.4 26 404-433 103-128 (365)
461 KOG1854 Mitochondrial inner me 93.6 3 6.5E-05 51.7 17.9 29 633-661 392-421 (657)
462 PF07200 Mod_r: Modifier of ru 93.6 1.2 2.5E-05 45.1 12.5 20 616-635 55-74 (150)
463 PF05384 DegS: Sensor protein 93.6 5.9 0.00013 41.9 17.8 92 571-662 24-116 (159)
464 PF06009 Laminin_II: Laminin D 93.6 0.02 4.2E-07 57.8 -0.1 96 613-710 21-124 (138)
465 PRK12705 hypothetical protein; 93.5 5.9 0.00013 48.4 20.2 7 716-722 185-191 (508)
466 KOG1962 B-cell receptor-associ 93.5 0.72 1.6E-05 50.6 11.5 62 600-661 149-210 (216)
467 PF05816 TelA: Toxic anion res 93.5 3.5 7.6E-05 47.4 17.6 102 589-695 85-190 (333)
468 PF09738 DUF2051: Double stran 93.5 1.4 3.1E-05 50.4 14.3 28 676-703 149-179 (302)
469 PF05335 DUF745: Protein of un 93.5 5.2 0.00011 43.2 17.7 67 596-662 75-141 (188)
470 PF05276 SH3BP5: SH3 domain-bi 93.5 12 0.00027 41.8 21.0 25 564-588 43-68 (239)
471 PF13863 DUF4200: Domain of un 93.5 4.2 9.1E-05 39.8 15.8 69 586-654 37-105 (126)
472 PF10212 TTKRSYEDQ: Predicted 93.5 4.7 0.0001 49.2 19.1 27 641-667 459-485 (518)
473 KOG2008 BTK-associated SH3-dom 93.5 2 4.2E-05 49.5 15.0 25 684-708 169-193 (426)
474 PF15294 Leu_zip: Leucine zipp 93.5 0.59 1.3E-05 52.9 11.1 32 630-661 190-221 (278)
475 PF12329 TMF_DNA_bd: TATA elem 93.4 0.53 1.1E-05 43.6 8.9 61 604-664 7-67 (74)
476 cd07651 F-BAR_PombeCdc15_like 93.4 10 0.00023 41.2 20.2 61 607-667 112-173 (236)
477 PF07889 DUF1664: Protein of u 93.4 1.3 2.9E-05 45.0 12.5 76 571-649 47-122 (126)
478 PF06705 SF-assemblin: SF-asse 93.4 14 0.00031 40.6 21.3 18 567-584 34-51 (247)
479 COG3599 DivIVA Cell division i 93.4 4.1 8.9E-05 44.7 17.0 74 540-619 28-105 (212)
480 PF07889 DUF1664: Protein of u 93.4 1.2 2.6E-05 45.3 12.1 57 588-644 68-124 (126)
481 KOG3809 Microtubule-binding pr 93.4 1.3 2.8E-05 52.7 13.9 52 578-629 476-527 (583)
482 PRK00286 xseA exodeoxyribonucl 93.3 2.4 5.2E-05 49.9 16.3 59 624-690 328-388 (438)
483 cd00584 Prefoldin_alpha Prefol 93.3 1.4 3E-05 43.5 12.3 89 569-658 1-129 (129)
484 TIGR00618 sbcc exonuclease Sbc 93.3 5.1 0.00011 52.2 20.6 148 549-699 399-588 (1042)
485 PF07798 DUF1640: Protein of u 93.3 4.2 9.1E-05 42.8 16.4 128 570-697 19-151 (177)
486 PF15450 DUF4631: Domain of un 93.3 0.74 1.6E-05 55.6 12.1 130 565-694 18-151 (531)
487 PRK15178 Vi polysaccharide exp 93.3 1.5 3.2E-05 52.4 14.5 122 549-691 215-338 (434)
488 COG1382 GimC Prefoldin, chaper 93.3 1.7 3.8E-05 43.9 12.8 90 568-658 7-112 (119)
489 PF05700 BCAS2: Breast carcino 93.2 3 6.4E-05 45.5 15.7 112 569-692 99-221 (221)
490 PF02601 Exonuc_VII_L: Exonucl 93.2 3.8 8.3E-05 46.1 17.1 129 560-691 136-271 (319)
491 PF02994 Transposase_22: L1 tr 93.2 0.15 3.3E-06 59.2 6.3 119 546-666 65-187 (370)
492 PF04582 Reo_sigmaC: Reovirus 93.2 0.068 1.5E-06 61.2 3.4 120 559-680 34-153 (326)
493 PF04912 Dynamitin: Dynamitin 93.2 2 4.4E-05 50.1 15.3 129 559-693 208-387 (388)
494 PF12004 DUF3498: Domain of un 93.2 0.026 5.5E-07 67.7 0.0 145 544-697 350-495 (495)
495 KOG2891 Surface glycoprotein [ 93.1 3.2 7E-05 47.1 15.9 134 549-697 291-430 (445)
496 TIGR02473 flagell_FliJ flagell 93.1 7.6 0.00016 38.3 17.0 111 544-657 7-130 (141)
497 TIGR03752 conj_TIGR03752 integ 93.1 0.74 1.6E-05 55.2 11.6 81 569-649 61-142 (472)
498 PF02403 Seryl_tRNA_N: Seryl-t 93.1 1.4 3.1E-05 42.2 11.7 93 539-635 2-100 (108)
499 PF10234 Cluap1: Clusterin-ass 93.1 4.6 0.0001 45.8 17.2 130 555-697 112-241 (267)
500 PF10234 Cluap1: Clusterin-ass 93.0 3.2 7E-05 46.9 16.0 124 557-682 117-261 (267)
No 1
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-37 Score=375.56 Aligned_cols=545 Identities=27% Similarity=0.327 Sum_probs=330.7
Q ss_pred CcccccccccccccCCHHHHHHHHhHHhhhhcCCCCCHHHHHhhhcCCccCCCCCCccccccccCCCCCCCCCCCCCCCC
Q 001058 1 MQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTPDIVKAALYGPASARIPAPQINLAAMPSSHSRVGAPASQVSGA 80 (1170)
Q Consensus 1 ~qvWa~Ad~~r~GfLg~~eF~~am~lvs~aQs~~e~t~d~~~~~~yg~~~~~i~~p~~n~~a~~~~~~~~~~~~~~~~~~ 80 (1170)
+|||.+||...-|||++.+||+||+||++||+|++++..++ +++...+|+|.+|+...|.++.+..++
T Consensus 48 ~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~-----~~~~~~pp~~~~~~~~~~~~~~~~~~s------- 115 (847)
T KOG0998|consen 48 GQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV-----LPASAVPPPPKISHDTSPPSRPSSSTS------- 115 (847)
T ss_pred hccccccccccCCccccccccccchHhhhhhcccCcCcccc-----ccccCCCCCCccCccCCCcccCCCCCC-------
Confidence 58999999999999999999999999999999999999887 678899999999999999888654311
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCccCCCCCCc
Q 001058 81 PSPQNVSVRGPQGLGNASTNQQSPPSQSNHFVRTPQAVLPGTTLHPQQVLSGQSMPSGGTMTAPRPPTSNVSTDWLGGST 160 (1170)
Q Consensus 81 ~~~q~~~~~g~~~~~~~~~n~q~~p~q~~~~~rp~q~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~ 160 (1170)
-++ ..+....|.|++..|.-+.+.|-.+.. .|.-+.+++.++.+..|||+...
T Consensus 116 --------~~~-~~p~~~~qe~aky~q~f~s~~p~~g~~------------------sg~~~~pil~~s~Lp~~~l~~iw 168 (847)
T KOG0998|consen 116 --------AAP-FVPAITPQEQAKYDQIFRSLSPSNGLL------------------SGDKAKPILLNSKLPSDVLGRIW 168 (847)
T ss_pred --------Ccc-cCCCCCHHHHHHHHHHHhccCCCCCcc------------------ccchhhhhhhcCCCChhhhcccc
Confidence 112 444566677777777766666654322 23346778889999999998766
Q ss_pred cCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccccCCccccCcccccCCCCCCCC
Q 001058 161 VSPLAGSTTQLPNRGSSPSLPQEGFGLPASSLAPSVQPRPPITSGGRAGSPLAGTTSQVSDRGISASSTLDRFGLPASSV 240 (1170)
Q Consensus 161 ~~~~~~~~~q~~~~g~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1170)
..+-....-.+.. .- |-++--.+ .... ... +
T Consensus 169 ~l~d~d~~g~Ld~-~e--------f~~am~l~-------------------------~~~l--------------~~~-~ 199 (847)
T KOG0998|consen 169 ELSDIDKDGNLDR-DE--------FAVAMHLI-------------------------NDLL--------------NGN-S 199 (847)
T ss_pred ccccccccCCCCh-hh--------hhhhhhHH-------------------------HHHh--------------hcc-c
Confidence 4222111110000 00 00000000 0000 000 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeccCCcCCCCccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCC
Q 001058 241 APSVQPRPPGTSAQTPATAPKPQAPDSKSLVVSGNGFSSDSLFGDVFSASPVQPKQDVAISGSVPTSTASVPASPAPKPS 320 (1170)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~sgng~~s~s~fgd~fsa~~~~~~q~~~~~~~~p~s~~~~p~s~~~~p~ 320 (1170)
.|.+ - ..+..+.. +.+...+++| ++. .+ ++++++ +++..
T Consensus 200 ~p~P-----------~-~~p~~lIp-ps~~~~~~~~-------~~~-~~-~~~~~~---------------~~~~~---- 238 (847)
T KOG0998|consen 200 EPVP-----------S-RLPPSLIP-PSKSELSANS-------SSK-AI-PFSQPF---------------LASMA---- 238 (847)
T ss_pred CCCC-----------c-cCCcccCC-cchhcccccC-------ccc-cc-cccccc---------------ccccc----
Confidence 1000 0 01111111 1222333333 122 21 223333 11011
Q ss_pred CCCCCCCccccccccCCCCCccccCcCccccccccccCCCCCCCCCCcccCCCCCCCCCCCCCC-CCCCHHHHHHHHHHH
Q 001058 321 LKAGPVEPVQHAFSQPPVGGQYQQGQSAGKQNQQFAVKSTPAAASTGFPIGALNSTSSQSHVPW-PKMTHSEVQKYTKVF 399 (1170)
Q Consensus 321 ~k~~~~~~lQ~~~~~~~~g~~lqq~~s~~~~~~~~~~p~~~~~~sp~~~~g~~~s~~~qsq~~W-p~LSpEEkqeyreaF 399 (1170)
.+..+.++....++.+..++....+.+ +.+....| +.|++.++.+|.+||
T Consensus 239 --------~~~~~~~l~~~s~~~~~~s~~~~~~~~---------------------~~q~~~s~~~~vsp~d~~~~~~if 289 (847)
T KOG0998|consen 239 --------SPTTLSSLVDLSALNSNPSLSSLSLAS---------------------SMQLIVSWSPKVSPSDKQKYSKIF 289 (847)
T ss_pred --------cccccccccchhcccCCcccccccccc---------------------ccccccccCcccChHHHHHHHHHH
Confidence 011222222222333333333222221 22333345 579999999999999
Q ss_pred HhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH-hcCCCCCCCCCCCCCCCcc
Q 001058 400 VQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY-REGRPLPTMLPSTIMPDEA 478 (1170)
Q Consensus 400 ~~fDkDgDG~ISgdELr~~fLGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~-lkG~pLP~~LPpsL~Pp~~ 478 (1170)
..+|++.+|+|++.+++.+|+.++|+...|++||.++|++++|.|+++|||.+||++.++ ++|++||.+||..|+|+..
T Consensus 290 ~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~~~~g~~lP~vl~~s~~p~~~ 369 (847)
T KOG0998|consen 290 SQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQKRAEGRSLPSVLPSSLIPSEN 369 (847)
T ss_pred HhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccchhhhhhhhhhhcCCCCcccccccccCccc
Confidence 999999999999999999999999999999999999999999999999999999999999 7999999999999999843
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHhhhcHHHH
Q 001058 479 LFSTTSQPQAPHVSGTWGPVAGVQQPHAS-----RPPT-GKPPRPFPVPQADRSVQTTPQKSKVPELEKHLMDQLSKEEQ 552 (1170)
Q Consensus 479 ~~~~t~~Psa~~~~~~~~~~~gl~Q~~Gs-----~P~~-~rPp~p~l~pQ~d~~~~~~q~kS~~P~LDd~lLnqls~EEe 552 (1170)
.+.........++ ..+....+-.+...+ .... .++.. .+.+......+..-..+.++. .+++..++.
T Consensus 370 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----~~~~~~~~~~~~~~~s~~~~~--~~~l~~~~s 442 (847)
T KOG0998|consen 370 RKQTNPTTRASTA-ESPSSEQSSLAELKSLALSIASNPREKPRL----EQSSSEAPRTTPVKTSPVLEL--ANELSNLAS 442 (847)
T ss_pred cccCCcccccccc-ccCCcccccccccccccccccccccccccc----ccccccccccCcccccccccc--hhhhhhcch
Confidence 2221111111111 122221111111111 1111 13312 122211111222222222222 456666655
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 001058 553 ESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS 632 (1170)
Q Consensus 553 ~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQI 632 (1170)
...+-.++.. +.+.++.|+.+++..++++...++.+|+++.++.++|.++|+++..++..+++|++.++.+|+++++|+
T Consensus 443 ~~~~l~~~~~-~~~~k~~e~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~ 521 (847)
T KOG0998|consen 443 TSQQLPAQKD-TVQDKLNELDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQL 521 (847)
T ss_pred hhhccccccc-hhhhhhhhhhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHHHHHHHhhhHHHH
Confidence 5544322222 256899999999999999999999999999999999999999999999999999999999998777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccccccccCC
Q 001058 633 GDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPTLLVELPFG 712 (1170)
Q Consensus 633 SELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~GL~aK~~~~vElp~g 712 (1170)
..|...|...|.+ +++|++.|+++|.++....|..+++++.|.
T Consensus 522 ~~l~~~v~~~~~~-------------------------------------ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~ 564 (847)
T KOG0998|consen 522 SVLEGSVKAIESQ-------------------------------------VENLQKELLDLIYEMADTRSKSTLLDDSFK 564 (847)
T ss_pred hHHhhhhhhhhhh-------------------------------------hhhhHhHHHHHHHHHHhhcccchhhhhhhh
Confidence 5555555444444 444444444444444444444555555555
Q ss_pred cccCccccccccccchhcccccCcchhhhhhhcccccCC
Q 001058 713 WQPGIQEGTADWDEDWDKLEDEGFTFVKELTLEVQNVVA 751 (1170)
Q Consensus 713 w~~~~qe~a~~w~edwd~~~d~gf~~~~~~~~~v~~~~~ 751 (1170)
|+..++|....|.++|++.+. ...++|...+++.+.
T Consensus 565 ~~~~~~~~~~~~~k~~n~~~~---~s~~~l~~~~e~~~~ 600 (847)
T KOG0998|consen 565 VGMELFEQLLKGSKLVNGKDQ---NSSTELAGYLEGTIN 600 (847)
T ss_pred hhhhhhhhhhhhhhccccccc---cchhhhhhhcccccc
Confidence 555555555555555555422 344444444444443
No 2
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-29 Score=290.69 Aligned_cols=100 Identities=35% Similarity=0.653 Sum_probs=94.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 001058 382 VPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 461 (1170)
Q Consensus 382 ~~Wp~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fLGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~lk 461 (1170)
..| .+....+.+|+++|+.+|+.+.|||++.++|.+|+.++|+..+|++||.|.|+|+||+|+-+||++|||||+.++.
T Consensus 185 ~eW-AVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~liema~s 263 (1118)
T KOG1029|consen 185 EEW-AVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLIEMAKS 263 (1118)
T ss_pred hhc-cccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHHHHHHHHHHHhc
Confidence 479 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCCC
Q 001058 462 GRPLPTMLPSTIMPDEALFSTTS 484 (1170)
Q Consensus 462 G~pLP~~LPpsL~Pp~~~~~~t~ 484 (1170)
|.+||.+||+.|+|| .++...
T Consensus 264 Gq~lP~tlP~E~Vpp--~~r~~r 284 (1118)
T KOG1029|consen 264 GQPLPKTLPPELVPP--SFRSSR 284 (1118)
T ss_pred CCCCCCCCChhhcCc--cccccc
Confidence 999999999999999 444433
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-20 Score=220.11 Aligned_cols=91 Identities=42% Similarity=0.700 Sum_probs=87.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 001058 382 VPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 461 (1170)
Q Consensus 382 ~~Wp~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fLGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~lk 461 (1170)
.+| .|+.+|+.++.+.|..+ +.+.|||+++++|.||+.++||..+|.+||.|+|.|+||+|+..||.+||+||..++.
T Consensus 6 n~W-avT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLq 83 (1118)
T KOG1029|consen 6 NPW-AVTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQ 83 (1118)
T ss_pred Ccc-ccchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhc
Confidence 469 89999999999999999 4689999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 001058 462 GRPLPTMLPSTIM 474 (1170)
Q Consensus 462 G~pLP~~LPpsL~ 474 (1170)
|++||.+|||+|.
T Consensus 84 G~~lP~~LPPsll 96 (1118)
T KOG1029|consen 84 GIQLPPVLPPSLL 96 (1118)
T ss_pred CCcCCCCCChHHh
Confidence 9999999999653
No 4
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=99.80 E-value=6.4e-20 Score=174.61 Aligned_cols=92 Identities=46% Similarity=0.889 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC--
Q 001058 385 PKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG-- 462 (1170)
Q Consensus 385 p~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fLGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~lkG-- 462 (1170)
|+|+++|+++|+++|+.+|. .+|+|++++++.+|++++|+.++|.+||+++|.|+||+|+++|||+|||||.++++|
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~~ 80 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGNG 80 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999985 689999999999999999999999999999999999999999999999999988755
Q ss_pred CCCCCCCCCCCCCCc
Q 001058 463 RPLPTMLPSTIMPDE 477 (1170)
Q Consensus 463 ~pLP~~LPpsL~Pp~ 477 (1170)
.+||..||+.|+|++
T Consensus 81 ~~lP~~LP~~L~p~s 95 (104)
T PF12763_consen 81 KPLPSSLPPSLIPPS 95 (104)
T ss_dssp S---SSSSGGGSSSC
T ss_pred CCCchhcCHHHCCCC
Confidence 699999999999983
No 5
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.4e-16 Score=180.66 Aligned_cols=101 Identities=40% Similarity=0.733 Sum_probs=96.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 001058 375 STSSQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 454 (1170)
Q Consensus 375 s~~~qsq~~Wp~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fLGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~ 454 (1170)
-+.+....+| +|++|++++|.+.|+.+-.|-.|+|+|.-+++||.+++|+.+||.+||+|+|.|+||-|+++|||.|||
T Consensus 214 dnsS~~d~pw-~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 214 DNSSELDTPW-QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred ccccccCCcc-ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 3456777889 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCC
Q 001058 455 LMERYREGRPLPTMLPSTIMPD 476 (1170)
Q Consensus 455 LIe~~lkG~pLP~~LPpsL~Pp 476 (1170)
||..+++|++||+.||.+|.|-
T Consensus 293 LVVaRkNgypLPe~LP~~L~P~ 314 (737)
T KOG1955|consen 293 LVVARKNGYPLPESLPHCLHPN 314 (737)
T ss_pred heeecccCCCCCCCCccccChh
Confidence 9999999999999999999986
No 6
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.65 E-value=7.6e-16 Score=142.22 Aligned_cols=93 Identities=37% Similarity=0.752 Sum_probs=90.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001058 383 PWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 462 (1170)
Q Consensus 383 ~Wp~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fLGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~lkG 462 (1170)
+| .|+++++.+|+++|..||+|++|+|+.+|++.+|...+++.+++.+||.++|.+++|.|+|+||+.+|+++.+.+.|
T Consensus 1 ~~-~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g 79 (96)
T smart00027 1 DW-AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNG 79 (96)
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcC
Confidence 58 89999999999999999999999999999999997788999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCC
Q 001058 463 RPLPTMLPSTIMPD 476 (1170)
Q Consensus 463 ~pLP~~LPpsL~Pp 476 (1170)
.+||..||+.|+|+
T Consensus 80 ~~~~~~~~~~~~~~ 93 (96)
T smart00027 80 YPIPASLPPSLIPP 93 (96)
T ss_pred CCCCccCCHhhcCC
Confidence 99999999999997
No 7
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=4.3e-13 Score=164.74 Aligned_cols=123 Identities=26% Similarity=0.507 Sum_probs=102.9
Q ss_pred cccccccCC--CCCCCCCCcccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHH
Q 001058 351 QNQQFAVKS--TPAAASTGFPIGALNSTSSQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREV 428 (1170)
Q Consensus 351 ~~~~~~~p~--~~~~~sp~~~~g~~~s~~~qsq~~Wp~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fLGS~Lpeee 428 (1170)
....+++|. ++....+.++.+. .......| .+++.++.+|.++|..+.. ..|+++++.++.+|+.++|+.+.
T Consensus 90 ~~~~~pp~~~~~~~~~~~~~~~~~----~s~~~~~p-~~~~qe~aky~q~f~s~~p-~~g~~sg~~~~pil~~s~Lp~~~ 163 (847)
T KOG0998|consen 90 PASAVPPPPKISHDTSPPSRPSSS----TSAAPFVP-AITPQEQAKYDQIFRSLSP-SNGLLSGDKAKPILLNSKLPSDV 163 (847)
T ss_pred cccCCCCCCccCccCCCcccCCCC----CCCcccCC-CCCHHHHHHHHHHHhccCC-CCCccccchhhhhhhcCCCChhh
Confidence 445555554 3344344444432 34555678 6999999999999999986 59999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc--CCCCCCCCCCCCCCCccc
Q 001058 429 LKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE--GRPLPTMLPSTIMPDEAL 479 (1170)
Q Consensus 429 L~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~lk--G~pLP~~LPpsL~Pp~~~ 479 (1170)
|.+||.++|+|.+|.|++.||.++||||..+++ -.+.|..||+.++|+.+.
T Consensus 164 l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p~P~~~p~~lIpps~~ 216 (847)
T KOG0998|consen 164 LGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNSEPVPSRLPPSLIPPSKS 216 (847)
T ss_pred hccccccccccccCCCChhhhhhhhhHHHHHhhcccCCCCccCCcccCCcchh
Confidence 999999999999999999999999999999999 579999999999999643
No 8
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.04 E-value=7.5e-10 Score=93.76 Aligned_cols=67 Identities=40% Similarity=0.683 Sum_probs=62.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 001058 395 YTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 461 (1170)
Q Consensus 395 yreaF~~fDkDgDG~ISgdELr~~fLGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~lk 461 (1170)
|+++|..+|+|++|+|+.+|++.+|...+++.+++.+||..+|.+++|.|+|+||+.+|+++.++++
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 67 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIALALN 67 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999777889999999999999999999999999999999998763
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.97 E-value=2.4e-08 Score=109.32 Aligned_cols=136 Identities=14% Similarity=0.214 Sum_probs=127.8
Q ss_pred HhhhcHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHH
Q 001058 544 MDQLSKEEQESLNAKLKEATE-ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLA 622 (1170)
Q Consensus 544 Lnqls~EEe~~LnserqEAEE-aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLr 622 (1170)
|.+++.+|+..+.+.++++++ |..|+.+++.++......+...+..+.++.+..+.+..+|..+..+...|++.|..|+
T Consensus 171 L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 171 LREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 478999999999999999987 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 001058 623 KKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 684 (1170)
Q Consensus 623 qKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLe 684 (1170)
.+|+ .++..++..|..+|.+|++++.++..+..+|++|++.+ ..|+.+|..|++.|+
T Consensus 251 ~~~~---~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K--~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 251 QRLD---EEREEYQAEIAELEEELAELREEMARQLREYQELLDVK--LALDAEIATYRKLLE 307 (312)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHT
T ss_pred HHHH---HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHh
Confidence 9998 88888899999999999999999999999999999999 999999999999997
No 10
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=8e-10 Score=124.50 Aligned_cols=96 Identities=31% Similarity=0.627 Sum_probs=89.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHH
Q 001058 379 QSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 458 (1170)
Q Consensus 379 qsq~~Wp~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fLGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~ 458 (1170)
-.+..| .++ .++-.|+++|..+- .-+|+|++..++.-|.+++||..+|.+||.++|+|+||+|+-+||+.|-|||..
T Consensus 432 ~d~~ew-vv~-~dk~~yde~fy~l~-p~~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefala~hli~~ 508 (532)
T KOG1954|consen 432 ADEAEW-VVS-KDKPTYDEIFYTLS-PVNGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKL 508 (532)
T ss_pred Ccccce-eee-cCCcchHhhhhccc-ccCceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHHHHHHHHhe
Confidence 567789 444 46889999999996 579999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCCCCc
Q 001058 459 YREGRPLPTMLPSTIMPDE 477 (1170)
Q Consensus 459 ~lkG~pLP~~LPpsL~Pp~ 477 (1170)
+++|..||..||+.|+||+
T Consensus 509 kleghelp~~lp~hl~pps 527 (532)
T KOG1954|consen 509 KLEGHELPSELPKHLVPPS 527 (532)
T ss_pred ecccccCccccCcccCCcc
Confidence 9999999999999999993
No 11
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.86 E-value=4.6e-09 Score=89.88 Aligned_cols=60 Identities=27% Similarity=0.462 Sum_probs=51.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHcC--CCC----HHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 001058 394 KYTKVFVQVDIDRDGKITGEQAYNLFLSW--RLP----REVLKQVWDLSDQDNDGMLSLKEFCTAL 453 (1170)
Q Consensus 394 eyreaF~~fDkDgDG~ISgdELr~~fLGS--~Lp----eeeL~qIWdLaD~D~DGkLdfdEF~iAM 453 (1170)
+|+++|+.+|+|++|+|+.+|++.++... .++ .+.+..||..+|.|+||.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 58999999999999999999999999443 333 4566677999999999999999999776
No 12
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.85 E-value=8.7e-09 Score=96.30 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhCC-CCCCcccHHHHHHHH---HcCCCCH-HHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001058 390 SEVQKYTKVFVQVDI-DRDGKITGEQAYNLF---LSWRLPR-EVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 462 (1170)
Q Consensus 390 EEkqeyreaF~~fDk-DgDG~ISgdELr~~f---LGS~Lpe-eeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~lkG 462 (1170)
.-+..|+++|+.||+ +++|+|+.+||+.+| ++..++. +++.+|++.+|.|+||+|+|+||+.+|.-+..+..+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~~~ 82 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAVKG 82 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 346789999999999 999999999999999 4556887 999999999999999999999999888777666544
No 13
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.74 E-value=1.9e-08 Score=99.97 Aligned_cols=64 Identities=25% Similarity=0.382 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 001058 391 EVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 454 (1170)
Q Consensus 391 EkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~ 454 (1170)
...+++++|+.||+|++|+|+..||+.+| ++.+++.+++..|+..+|.|+||+|+|+||+.+|.
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 46689999999999999999999999999 78899999999999999999999999999997664
No 14
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.72 E-value=2.1e-08 Score=102.97 Aligned_cols=64 Identities=25% Similarity=0.389 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 001058 390 SEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 453 (1170)
Q Consensus 390 EEkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM 453 (1170)
+..++|+.+|+.||+|++|+|+..+|+.+| ++.++++++|..|+.++|.|+||+|+|++|+.+|
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 346899999999999999999999999999 7999999999999999999999999999999644
No 15
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.67 E-value=7.1e-08 Score=95.95 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHH
Q 001058 387 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 458 (1170)
Q Consensus 387 LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~ 458 (1170)
++.++..+|+++|..||+|++|+|+..||+.+| ++..+++.+|..|+..+|.|++|.|+++||+.+|.....
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 677889999999999999999999999999999 788899999999999999999999999999965554443
No 16
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.63 E-value=1.6e-07 Score=87.40 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHc-------CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Q 001058 391 EVQKYTKVFVQVD-IDRDG-KITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 459 (1170)
Q Consensus 391 EkqeyreaF~~fD-kDgDG-~ISgdELr~~fLG-------S~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~ 459 (1170)
-+..++++|+.|| +|++| +|+.+||+.+|.. ...++++|.+||+.+|.|++|+|+|+||+.+|.-+..+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~~ 83 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTTA 83 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4678999999998 89999 5999999999953 45788999999999999999999999999776655544
No 17
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.63 E-value=1.3e-07 Score=87.07 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhC-CCCCCc-ccHHHHHHHHH---c----CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001058 392 VQKYTKVFVQVD-IDRDGK-ITGEQAYNLFL---S----WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 462 (1170)
Q Consensus 392 kqeyreaF~~fD-kDgDG~-ISgdELr~~fL---G----S~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~lkG 462 (1170)
+..++++|+.|| +|++|+ |+..||+.+|. + ..++.+++.+|+..+|.|++|.|+|+||+.+|..+..+..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVACNN 87 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 578999999997 999995 99999999993 2 24588999999999999999999999999888777655433
No 18
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.61 E-value=1.9e-07 Score=87.15 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHc-------CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHh
Q 001058 391 EVQKYTKVFVQVD-IDRDG-KITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 460 (1170)
Q Consensus 391 EkqeyreaF~~fD-kDgDG-~ISgdELr~~fLG-------S~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~l 460 (1170)
-+..+.++|..|| +|++| +|+..||+.+|.. ...+..+|.+|++.+|.|+||.|+|+||+.+|.-+..+.
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~~~ 86 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTVAC 86 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3578999999999 78998 5999999999932 345788999999999999999999999998876665443
No 19
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.59 E-value=2.1e-07 Score=86.51 Aligned_cols=69 Identities=12% Similarity=0.201 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhCC-CC-CCcccHHHHHHHHH-----cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Q 001058 391 EVQKYTKVFVQVDI-DR-DGKITGEQAYNLFL-----SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 459 (1170)
Q Consensus 391 EkqeyreaF~~fDk-Dg-DG~ISgdELr~~fL-----GS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~ 459 (1170)
-+..+.++|+++|. ++ +|+|+.+||+.+|. +.+++.++|.+||+.+|.|++|+|+|+||+..|.-+..+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 35689999999998 77 89999999999993 778999999999999999999999999999776665544
No 20
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.58 E-value=2.2e-07 Score=84.41 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhCC--CCCCcccHHHHHHHHH---cCCC----CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 001058 389 HSEVQKYTKVFVQVDI--DRDGKITGEQAYNLFL---SWRL----PREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 457 (1170)
Q Consensus 389 pEEkqeyreaF~~fDk--DgDG~ISgdELr~~fL---GS~L----peeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe 457 (1170)
+++++.++++|..||+ |++|+|+.+|++.+|. +..+ +.+++..||..+|.+++|.|+|+||+.+|.-+.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4678899999999999 8999999999999983 3333 489999999999999999999999997665544
No 21
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.57 E-value=2.8e-07 Score=85.45 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhhCC-CC-CCcccHHHHHHHHH-------cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHh
Q 001058 391 EVQKYTKVFVQVDI-DR-DGKITGEQAYNLFL-------SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 460 (1170)
Q Consensus 391 EkqeyreaF~~fDk-Dg-DG~ISgdELr~~fL-------GS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~l 460 (1170)
-+..|+++|..||. |+ +|+|+.+||+.+|. +..++.+++..|+..+|.+++|.|+|+||+.+|.-+....
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~ 84 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIAC 84 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 36789999999997 97 69999999999983 4577999999999999999999999999998776555443
No 22
>PTZ00183 centrin; Provisional
Probab=98.48 E-value=6.3e-07 Score=86.87 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 001058 386 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 455 (1170)
Q Consensus 386 ~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~L 455 (1170)
.+++++++++..+|..+|.+++|+|+..|++.+| ++..+...++..||..+|.+++|.|+|+||+.+|+.
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 6889999999999999999999999999999999 466788999999999999999999999999976654
No 23
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.46 E-value=7.6e-07 Score=83.12 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHh-hCCCCCC-cccHHHHHHHHHc-------CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHh
Q 001058 390 SEVQKYTKVFVQ-VDIDRDG-KITGEQAYNLFLS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 460 (1170)
Q Consensus 390 EEkqeyreaF~~-fDkDgDG-~ISgdELr~~fLG-------S~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~l 460 (1170)
..+..+..+|+. +|+|++| +|+.+||+.+|.. ......++.+||..+|.|+||.|+|+||+.+|.-+..+.
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~~~ 85 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAVAC 85 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 346789999999 7888986 9999999999943 356788999999999999999999999998776665543
No 24
>PTZ00184 calmodulin; Provisional
Probab=98.45 E-value=8.5e-07 Score=84.53 Aligned_cols=71 Identities=23% Similarity=0.385 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 001058 386 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLM 456 (1170)
Q Consensus 386 ~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LI 456 (1170)
.++++++++++++|..+|.+++|.|+..|++.++ ++..+..+++..||..+|.+++|.|+|+||+.+|..+
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 4778899999999999999999999999999998 4666788899999999999999999999999776643
No 25
>PRK11637 AmiB activator; Provisional
Probab=98.44 E-value=1.4e-05 Score=92.33 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=7.8
Q ss_pred CCCCCCCcccccCC
Q 001058 890 FDTHYDAESVWGFD 903 (1170)
Q Consensus 890 fd~~~d~dsvw~~~ 903 (1170)
-||++..-+||+-+
T Consensus 365 i~hg~g~~t~Y~~~ 378 (428)
T PRK11637 365 VEHGKGDMSLYGYN 378 (428)
T ss_pred EEeCCCcEEEccCC
Confidence 35555566666543
No 26
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.34 E-value=1.5e-06 Score=89.46 Aligned_cols=72 Identities=18% Similarity=0.368 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHH
Q 001058 386 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 458 (1170)
Q Consensus 386 ~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~ 458 (1170)
.++++++++++++|..+|+|++|.|+.++|..+| ++.+++..++.+|+...|. +.+.|+|.+|+.+|....+
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999998 7999999999999999999 9999999999977665543
No 27
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.32 E-value=1.9e-06 Score=69.01 Aligned_cols=59 Identities=25% Similarity=0.422 Sum_probs=54.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 001058 395 YTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 453 (1170)
Q Consensus 395 yreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM 453 (1170)
++.+|..+|.+++|.|+..|++.++ ++...+.+.+..+|..+|.+++|.|+++||+..|
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 6789999999999999999999999 4678899999999999999999999999998543
No 28
>PRK09039 hypothetical protein; Validated
Probab=98.31 E-value=2.2e-05 Score=89.15 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 618 VELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 618 IEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
+..|+.++.+++...++.+.+|+.|..+|..+++|+..|+.+|..++.+. ..++++|.+++.+|+.+
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~--~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD--RESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555566666666666666666666666555 44555555555555533
No 29
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.24 E-value=3.4e-06 Score=82.69 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 001058 388 THSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 453 (1170)
Q Consensus 388 SpEEkqeyreaF~~fDkDgDG~ISgdELr~~fLGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM 453 (1170)
.+..+.++.-+|..+|+|+||+|+.+||..++ ....+..+..++..+|.|+||.|+++||+.++
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45668899999999999999999999999987 34557788999999999999999999999665
No 30
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.23 E-value=6.9e-06 Score=97.51 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH-------HHH
Q 001058 565 ADKKVEELEKEI----LTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY-------KQS 632 (1170)
Q Consensus 565 aqKKL~ELEaEI----~~lreEIE-~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~-------KQI 632 (1170)
+..-|.|+++++ ...+++|+ ||+.++++++....|.-...+...+|+...+..|..|+.++-++. ++|
T Consensus 247 L~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I 326 (546)
T KOG0977|consen 247 LALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRI 326 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHH
Confidence 445555555554 55667777 888888887754444444444445555544444444444444333 344
Q ss_pred HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 633 GDVASK-----------LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 633 SELqsq-----------IA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
..|+.+ |...+++|..++++|.+|..+|++|.+.+ ..|+.+|..|+++|+-=
T Consensus 327 ~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~k--i~Ld~EI~~YRkLLege 389 (546)
T KOG0977|consen 327 EDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTK--ISLDAEIAAYRKLLEGE 389 (546)
T ss_pred HHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchH--hHHHhHHHHHHHHhccc
Confidence 444333 55668999999999999999999999999 99999999999999843
No 31
>PRK09039 hypothetical protein; Validated
Probab=98.22 E-value=4e-05 Score=87.10 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQ-------ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 637 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQ-------ELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqs 637 (1170)
++.+|.+++.++...+.+.+.++..++ +++....+++++|.+.+.+.++..++++.|+++++.+..|+..|+.
T Consensus 79 l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~ 158 (343)
T PRK09039 79 LQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA 158 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666444444444444322 4555566666667777666667777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 638 KLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 638 qIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
.|..+|.+.++++.|+..|++.|..+.
T Consensus 159 ~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 159 ALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766666643
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.19 E-value=2.8e-06 Score=70.68 Aligned_cols=49 Identities=33% Similarity=0.544 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHH--HcCC-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 001058 406 RDGKITGEQAYNLF--LSWR-LPREVLKQVWDLSDQDNDGMLSLKEFCTALY 454 (1170)
Q Consensus 406 gDG~ISgdELr~~f--LGS~-LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~ 454 (1170)
.+|+|+.++++.+| ++.. ++.+++..|+..+|.|++|+|+|+||+.+|.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999 4777 9999999999999999999999999997664
No 33
>PTZ00183 centrin; Provisional
Probab=98.17 E-value=6.1e-06 Score=80.06 Aligned_cols=61 Identities=26% Similarity=0.366 Sum_probs=56.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 001058 393 QKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 453 (1170)
Q Consensus 393 qeyreaF~~fDkDgDG~ISgdELr~~fL--GS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM 453 (1170)
..++.+|..+|++++|+|+.+|++.++. +..++.+++..|+..+|.+++|.|+|+||+.+|
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 5688999999999999999999999994 667999999999999999999999999998654
No 34
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.16 E-value=0.00011 Score=92.30 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001058 639 LTLEEATFRDIQEKKMEL 656 (1170)
Q Consensus 639 IA~LEAeLQDIQeQ~~eL 656 (1170)
+..++.++..++.++..+
T Consensus 429 ~~~l~~~~~~l~~~~~~~ 446 (1164)
T TIGR02169 429 IAGIEAKINELEEEKEDK 446 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 35
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.14 E-value=8.8e-06 Score=75.40 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhhCCC--CCCcccHHHHHHHHH---cCCCC----HHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Q 001058 390 SEVQKYTKVFVQVDID--RDGKITGEQAYNLFL---SWRLP----REVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 459 (1170)
Q Consensus 390 EEkqeyreaF~~fDkD--gDG~ISgdELr~~fL---GS~Lp----eeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~ 459 (1170)
.-+..+..+|..++.. ++|+|+.+||+.+|. +..++ ++++..||..+|.|++|.|+|+||+.+|.-+..+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 3467899999999865 479999999999993 34465 8999999999999999999999999877665443
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.14 E-value=0.00017 Score=79.37 Aligned_cols=113 Identities=16% Similarity=0.278 Sum_probs=87.2
Q ss_pred HHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKE----ILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTL 641 (1170)
Q Consensus 567 KKL~ELEaE----I~~lreEIE-~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~ 641 (1170)
..|.+++.+ +...+++++ +|+.++++|.....+....+.....++..+++.++.|+.+++.+..+...|+.+|..
T Consensus 169 ~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 169 AALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 444455444 467788888 999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 001058 642 EEA----TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 684 (1170)
Q Consensus 642 LEA----eLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLe 684 (1170)
+|. ++++.+..+..|+.+|.++.. .+...+++|+..|+
T Consensus 249 le~~~~~~~~~~~~~i~~le~el~~l~~-----~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 249 LEQRLDEEREEYQAEIAELEEELAELRE-----EMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHH-----HHHHHHHHHHHHHH
Confidence 875 555566666666666666442 23344555555554
No 37
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=5.7e-06 Score=85.31 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 001058 391 EVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 454 (1170)
Q Consensus 391 EkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~ 454 (1170)
.+.+++.+|+.+|-|++|+|+..+|+.++ |+.+|+.++|.+|++++|.|+||.|+-+||+..|+
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 35789999999999999999999999999 89999999999999999999999999999996654
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=98.11 E-value=0.00026 Score=79.79 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhCcccCccccccccCCc
Q 001058 681 NELEELVKILNDRCKQYGLRAKPTLLVELPFGW 713 (1170)
Q Consensus 681 ~kLeELEKaL~Earqq~GL~aK~~~~vElp~gw 713 (1170)
.+|..|...+...++..|+.......-.|-+.|
T Consensus 276 ~Ev~~Lk~~~~~Le~~~gw~~~~~~~~~l~~~~ 308 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKLTGWKIVSISGSTLEFRY 308 (325)
T ss_pred HHHHHHHHHHHHHHHHHCcEEEEEeCCeEEEEE
Confidence 445566666666777888777444333333333
No 39
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.11 E-value=0.00017 Score=78.80 Aligned_cols=121 Identities=16% Similarity=0.258 Sum_probs=82.7
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH--HHHhcHHHHHHH
Q 001058 544 MDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITE--RVSGDKREVELL 621 (1170)
Q Consensus 544 Lnqls~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~e--EvsaLKrEIEsL 621 (1170)
+.....+..+.+.+.+.+.+.+.+.+.+++.++.++.+++-.+...++++...+.+.+..|..++. +..+|.+|++.+
T Consensus 22 l~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~a 101 (239)
T COG1579 22 LEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIA 101 (239)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 445555666666666667777777777777788888887777777777777777777776655532 334666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 622 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 622 rqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
+.+...+..+|.+|...+..++.++.+++.++..++..+.+++
T Consensus 102 k~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 102 KERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666777777777776666666654
No 40
>PTZ00184 calmodulin; Provisional
Probab=98.10 E-value=9.5e-06 Score=77.41 Aligned_cols=62 Identities=23% Similarity=0.393 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 001058 392 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 453 (1170)
Q Consensus 392 kqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM 453 (1170)
...++.+|..+|.+++|+|+.+|++.+| .+..++.+++..|+..+|.+++|.|+|+||+.+|
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 3568899999999999999999999999 4667899999999999999999999999998654
No 41
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.10 E-value=5.5e-06 Score=87.97 Aligned_cols=78 Identities=28% Similarity=0.388 Sum_probs=66.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHH--HHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 001058 380 SHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREV--LKQVWDLSDQDNDGMLSLKEFCTALYLME 457 (1170)
Q Consensus 380 sq~~Wp~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fLGS~Lpeee--L~qIWdLaD~D~DGkLdfdEF~iAM~LIe 457 (1170)
....| ++..+++.+..+|..+|.|.||||+..||+.+|.+.+.|+.. |+.|+..+|.|.||+|+|.||+ ||.
T Consensus 88 teF~e--FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfrefl----LIf 161 (244)
T KOG0041|consen 88 TEFSE--FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFL----LIF 161 (244)
T ss_pred hhhhH--HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHH----HHH
Confidence 34446 999999999999999999999999999999999777777665 5899999999999999999998 555
Q ss_pred HH-hcCC
Q 001058 458 RY-REGR 463 (1170)
Q Consensus 458 ~~-lkG~ 463 (1170)
+. ..|.
T Consensus 162 rkaaagE 168 (244)
T KOG0041|consen 162 RKAAAGE 168 (244)
T ss_pred HHHhccc
Confidence 44 3454
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.06 E-value=0.0002 Score=88.06 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=41.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001058 552 QESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEIT 608 (1170)
Q Consensus 552 e~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~ 608 (1170)
+..|.+.++|-++++.|+.+|.+..+.-++-+..+.+++.+..+.+..++.+|.+.+
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666777777888888777777777777888888887777777777666654
No 43
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=98.03 E-value=0.00058 Score=76.98 Aligned_cols=12 Identities=25% Similarity=0.348 Sum_probs=8.3
Q ss_pred CCCcCHHHHHHH
Q 001058 441 DGMLSLKEFCTA 452 (1170)
Q Consensus 441 DGkLdfdEF~iA 452 (1170)
-..|++.+|+.+
T Consensus 11 ~~~isL~~FL~~ 22 (325)
T PF08317_consen 11 YEPISLQDFLNM 22 (325)
T ss_pred CCCcCHHHHHHH
Confidence 345888888843
No 44
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.01 E-value=0.00019 Score=89.99 Aligned_cols=32 Identities=6% Similarity=0.013 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 001058 389 HSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL 420 (1170)
Q Consensus 389 pEEkqeyreaF~~fDkDgDG~ISgdELr~~fL 420 (1170)
.+|+..+...|..-=.|.--.++-+..|.||.
T Consensus 161 k~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~ 192 (1074)
T KOG0250|consen 161 KEDLDTVVDHFNIQVENPMFVLSQDAARSFLA 192 (1074)
T ss_pred HHHHHHHHHHhCcCCCCcchhhcHHHHHHHHh
Confidence 45566666666655445556667777777763
No 45
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.01 E-value=0.00033 Score=71.14 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHH---HHHHHHHHHHH
Q 001058 559 LKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKK---YEEKYKQSGDV 635 (1170)
Q Consensus 559 rqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqK---YEE~~KQISEL 635 (1170)
+.|++.+..++.++++++-.+-++..-...+++.|+..++.++++|+.+.+++...+..++..... .+.+.+.|..|
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L 85 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL 85 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH
Confidence 334544445555555555555555444455555555555556666666666666666666554332 22233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 001058 636 ASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDR 693 (1170)
Q Consensus 636 qsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Ea 693 (1170)
+..|...+..|..+..++.++......++.+- ..|..+..+...++++|++.+.++
T Consensus 86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv--~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 86 EEELEEAEKKLKETTEKLREADVKAEHFERKV--KALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444444433322 456666666666677666665554
No 46
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.01 E-value=1.6e-05 Score=83.85 Aligned_cols=64 Identities=28% Similarity=0.455 Sum_probs=53.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHH---HcCCCC--HHHH----HHHHHHhCCCCCCCcCHHHHHHHHHHH
Q 001058 393 QKYTKVFVQVDIDRDGKITGEQAYNLF---LSWRLP--REVL----KQVWDLSDQDNDGMLSLKEFCTALYLM 456 (1170)
Q Consensus 393 qeyreaF~~fDkDgDG~ISgdELr~~f---LGS~Lp--eeeL----~qIWdLaD~D~DGkLdfdEF~iAM~LI 456 (1170)
++++=+|+.+|.+++|+|+.+|++.++ .+.... ++.+ ..++.++|.|+||+|+|+||+.++.-.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 688889999999999999999999998 465566 5544 556789999999999999999765543
No 47
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=1.5e-05 Score=82.41 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHh
Q 001058 386 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 460 (1170)
Q Consensus 386 ~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~l 460 (1170)
.++++++++++.+|..||.+++|+|+++||+..| +|..+.+++|.+|+..+|.++.|+|+|++|. +.|..++
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~---~~mt~k~ 99 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFR---RVMTVKL 99 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHH---HHHHHHH
Confidence 6899999999999999999999999999998888 7899999999999999999999999999999 4555443
No 48
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.96 E-value=0.00075 Score=76.26 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCccHHHHHHHHHHHHHHHHH
Q 001058 614 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEG-----ESGDGTLQQHADHIQNELEELVK 688 (1170)
Q Consensus 614 LKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~-----r~edA~LQeRIkqiQ~kLeELEK 688 (1170)
+|.++..+..+++.+.+++.+++.+++.++..|++..+++.+++.+|++++. ++... .+|..++.++.-|+
T Consensus 209 lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~---~Ei~~Lk~~~~~Le- 284 (312)
T smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTF---KEIEKLKEQLKLLQ- 284 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHH-
Confidence 3333333344444444444455555555555555555555555555555442 22222 23444444444443
Q ss_pred HHHHHHHHhCcccCcccc
Q 001058 689 ILNDRCKQYGLRAKPTLL 706 (1170)
Q Consensus 689 aL~Earqq~GL~aK~~~~ 706 (1170)
+..|+.......
T Consensus 285 ------~l~g~~~~~~~~ 296 (312)
T smart00787 285 ------SLTGWKITKLSG 296 (312)
T ss_pred ------HHhCCeeEeccC
Confidence 467777654433
No 49
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.96 E-value=0.00058 Score=76.45 Aligned_cols=122 Identities=18% Similarity=0.246 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 563 TEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 642 (1170)
Q Consensus 563 EEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~L 642 (1170)
.+...++.+|.+++..++.+...++.++++|..+.+.|.++|...-.++-.+|.++..++.++.+..+++.++...+-.+
T Consensus 154 ~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~ 233 (294)
T COG1340 154 LEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNL 233 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34677888999999999999999999999999999999998988888888899999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 001058 643 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 684 (1170)
Q Consensus 643 EAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLe 684 (1170)
...|.++...+..|..+..++.-+.....|++|...|-.+|.
T Consensus 234 ~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 234 QNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888888777755555678888888887776
No 50
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.96 E-value=0.00043 Score=87.04 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=16.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001058 592 ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 629 (1170)
Q Consensus 592 ELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~ 629 (1170)
++......-+.|+.+.++.+..+++++..++.+|.+.+
T Consensus 327 ~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~ 364 (1074)
T KOG0250|consen 327 ELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIE 364 (1074)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444455554444444444433
No 51
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.95 E-value=0.00047 Score=70.02 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS---GDKREVELLAKKYEEKYKQSGDVASKLTLEE 643 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvs---aLKrEIEsLrqKYEE~~KQISELqsqIA~LE 643 (1170)
.++.+++.+....-++|..|+.+++.|....-.+...|..+...+. .....++.|..++..+..++.....+|..+.
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433333333333333333222 1122233344444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 644 ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 644 AeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
..|+++..+...+....+.|+.+. ..+.+|+..+..+|.++
T Consensus 101 ekl~e~d~~ae~~eRkv~~le~~~--~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 101 EKLREADVKAEHFERKVKALEQER--DQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444 34445555555555443
No 52
>PF14658 EF-hand_9: EF-hand domain
Probab=97.90 E-value=2.5e-05 Score=70.44 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=54.3
Q ss_pred HHHHhhCCCCCCcccHHHHHHHH--HcC-CCCHHHHHHHHHHhCCCCC-CCcCHHHHHHHHHH
Q 001058 397 KVFVQVDIDRDGKITGEQAYNLF--LSW-RLPREVLKQVWDLSDQDND-GMLSLKEFCTALYL 455 (1170)
Q Consensus 397 eaF~~fDkDgDG~ISgdELr~~f--LGS-~LpeeeL~qIWdLaD~D~D-GkLdfdEF~iAM~L 455 (1170)
.+|+.||.++.|.|...+|+.+| ++. ..++.+|..|.+++|.++. |.|+|+.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999 566 8889999999999999988 99999999988864
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.89 E-value=0.00076 Score=79.49 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 001058 621 LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDR 693 (1170)
Q Consensus 621 LrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Ea 693 (1170)
.+.+|+++...+.++++.|...+.+|..++.+...|+.++.+|+.+. ..+.++|+++..+|++|...+.+.
T Consensus 328 ~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~--~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 328 IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEF--VDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hchHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666677778788888888888888888776 445667777777777664444333
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.88 E-value=0.00038 Score=85.69 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhhHHHHHHHHHH-------hcHHHHHHHHHHH
Q 001058 561 EATEADKKVEELEKEILTSREKIQFC--------STKMQELILYKSRCDNRLNEITERVS-------GDKREVELLAKKY 625 (1170)
Q Consensus 561 EAEEaqKKL~ELEaEI~~lreEIE~l--------rtQMQELqm~kqR~edELneI~eEvs-------aLKrEIEsLrqKY 625 (1170)
|.+.+..++.||+.++.-|+.|++.- .-+|..|..++.|+.+-|-.+..-.+ ++.+|+|.++.++
T Consensus 333 eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~ 412 (1243)
T KOG0971|consen 333 EVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSEL 412 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHH
Confidence 66667777777777777777776521 11666888888888776655544333 4444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCCCccHHHHHHHHHHHHHHHH
Q 001058 626 EEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL---KMEGESGDGTLQQHADHIQNELEELV 687 (1170)
Q Consensus 626 EE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq---kLE~r~edA~LQeRIkqiQ~kLeELE 687 (1170)
+++..+...|.++|..+|..|.++|+|+..-.-|.+ .|-+.+ .+|++|++.+...+.+||
T Consensus 413 ~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdkn--lnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 413 EELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKN--LNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhc--cCHHHHHHHHHHHHHHHH
Confidence 555555555666677778888888888765444333 233666 888999999887777665
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.88 E-value=0.00059 Score=74.69 Aligned_cols=101 Identities=14% Similarity=0.232 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHH---------HHHHHHHHHHHHHHHHHH
Q 001058 564 EADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKR---------EVELLAKKYEEKYKQSGD 634 (1170)
Q Consensus 564 EaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKr---------EIEsLrqKYEE~~KQISE 634 (1170)
+..+-|..+++++..+++.++.++..+.+|..++.+.+.+|+++.+++...+. ++..|..+++..+.++..
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777788888888888888888888888888888777764443 333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 635 VASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 635 LqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
|+..|+.+..++..+++++..|+.++.+++
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 56
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.86 E-value=0.00066 Score=76.42 Aligned_cols=72 Identities=18% Similarity=0.137 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 623 KKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 623 qKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
.+|++.+.++.+++..+..++++|..++.++.+++.++..+.... ...+++++.+++.+|.+++..+.++..
T Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 196 LELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTF-REEVLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555566666666666666655555544211 134566677778888877766666554
No 57
>PRK02224 chromosome segregation protein; Provisional
Probab=97.84 E-value=0.00097 Score=83.04 Aligned_cols=34 Identities=9% Similarity=-0.010 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 630 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 663 (1170)
Q Consensus 630 KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkL 663 (1170)
.++.+|+..+..++....++++++.++...|.++
T Consensus 606 ~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 606 DEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444443
No 58
>PRK03918 chromosome segregation protein; Provisional
Probab=97.83 E-value=0.0009 Score=83.04 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=9.6
Q ss_pred ccccchhcccccCcc
Q 001058 723 DWDEDWDKLEDEGFT 737 (1170)
Q Consensus 723 ~w~edwd~~~d~gf~ 737 (1170)
.+++-|++|.+.+|.
T Consensus 748 ~~~~if~~l~~~~~~ 762 (880)
T PRK03918 748 IASEIFEELTEGKYS 762 (880)
T ss_pred HHHHHHHHHcCCCee
Confidence 446667778665555
No 59
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.78 E-value=0.0015 Score=77.10 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=34.2
Q ss_pred HhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 597 KSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 663 (1170)
Q Consensus 597 kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkL 663 (1170)
...++++++++..++..++.+++.|+.++.++..++.++...|..++.++.+++.++..++..+.-+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444544455555555555555555544444444455555555555555555555555544
No 60
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.78 E-value=0.00059 Score=84.06 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001058 575 EILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS 612 (1170)
Q Consensus 575 EI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvs 612 (1170)
+|..+|+|.|.++.++++|...+++-...|..+..+++
T Consensus 461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~ 498 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA 498 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444444444444443
No 61
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.75 E-value=0.0014 Score=84.70 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=6.9
Q ss_pred cHHHHHHHHHHHHHHH
Q 001058 671 TLQQHADHIQNELEEL 686 (1170)
Q Consensus 671 ~LQeRIkqiQ~kLeEL 686 (1170)
.|+.+|+.+...+.++
T Consensus 888 ~l~~~l~~~~~~~~~~ 903 (1163)
T COG1196 888 ELEEELRELESELAEL 903 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.75 E-value=0.0015 Score=86.24 Aligned_cols=130 Identities=17% Similarity=0.140 Sum_probs=69.6
Q ss_pred HHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CC----
Q 001058 596 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES--GD---- 669 (1170)
Q Consensus 596 ~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~--ed---- 669 (1170)
....+..+|++..+++..++.+++.++.++++...++.+|+.+++.++.++..++.++.++++++..++.-+ |.
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~ 435 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDL 435 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 333344444444444445555555555556555666666666666666666666666666666666655222 21
Q ss_pred --ccHHHHHHHHHHHHHH--------------HHHHHHHHHHHhCcccCccccccccCCcccCcccccccccc
Q 001058 670 --GTLQQHADHIQNELEE--------------LVKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWDE 726 (1170)
Q Consensus 670 --A~LQeRIkqiQ~kLeE--------------LEKaL~Earqq~GL~aK~~~~vElp~gw~~~~qe~a~~w~e 726 (1170)
..|+..+.++..++++ +++++...++.|++.-+-.--|+-+-+|+.+ .|.--.|.+
T Consensus 436 SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~-~~~~~~~~~ 507 (1486)
T PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVA-RELLRRLRE 507 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH-HHHHHHhHH
Confidence 4455444444433333 3445555555555554444447777777733 333344443
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.72 E-value=0.0014 Score=86.41 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 644 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEA 644 (1170)
.+.++.+++.++..+..+++-|+.++++...+..-... +.....++..+..+++.|+.++++....+.+++.++..++.
T Consensus 305 tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleelee 383 (1486)
T PRK04863 305 EQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-ALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEA 383 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333222211 11222333444455555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHH
Q 001058 645 TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKI 689 (1170)
Q Consensus 645 eLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKa 689 (1170)
++..+++++..|+..+.+++... ..++.++.+|+..+.+|+++
T Consensus 384 EleelEeeLeeLqeqLaelqqel--~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 384 RAEAAEEEVDELKSQLADYQQAL--DVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554433333 34555555555555555443
No 64
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.70 E-value=0.0019 Score=83.54 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=4.6
Q ss_pred CCCCCCCCCC
Q 001058 466 PTMLPSTIMP 475 (1170)
Q Consensus 466 P~~LPpsL~P 475 (1170)
..+||..-+.
T Consensus 569 ~tflpl~~i~ 578 (1163)
T COG1196 569 ATFLPLDRIK 578 (1163)
T ss_pred cccCchhhhc
Confidence 4445554443
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.69 E-value=0.0032 Score=76.93 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Q 001058 644 ATFRDIQEKKMELYQAILKMEGES 667 (1170)
Q Consensus 644 AeLQDIQeQ~~eLqqALqkLE~r~ 667 (1170)
.+=+++|+|+.+|+.+..+|-+.+
T Consensus 160 sQN~eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 160 SQNRELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566677777777777766555
No 66
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=97.69 E-value=0.0017 Score=70.15 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 569 VEELEKEILTSREKIQFCSTKMQE 592 (1170)
Q Consensus 569 L~ELEaEI~~lreEIE~lrtQMQE 592 (1170)
+.+++.++.+++++.+.++.++++
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 67
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.68 E-value=0.002 Score=77.35 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=55.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHhcHHHHHHHHH
Q 001058 551 EQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRC-------DNRLNEITERVSGDKREVELLAK 623 (1170)
Q Consensus 551 Ee~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~-------edELneI~eEvsaLKrEIEsLrq 623 (1170)
|+..+...++.+++..+.+..++.+|..++++++.|+.++.+........ ...|.++.+++.-+|+.+..|+.
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 33334444444455566777777777888888777777665432222222 22233444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q 001058 624 KYEEKYKQSGDVASKLTLEEATF-------RDIQEKKMELYQAILKME 664 (1170)
Q Consensus 624 KYEE~~KQISELqsqIA~LEAeL-------QDIQeQ~~eLqqALqkLE 664 (1170)
+...+++++..|...|+.+..+| .+.+++++.|..+|.-+.
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444444444444443221 334444444554444433
No 68
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.68 E-value=0.0022 Score=74.95 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=42.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHH
Q 001058 554 SLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKK 624 (1170)
Q Consensus 554 ~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqK 624 (1170)
.+++-.+|+++.+++|.+.+.+...+..+|..+++.+..|.....+..++|+.+..+|+.+...++.|+.+
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444445555556666666666666666666666666666666666666666666666666666655333
No 69
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.67 E-value=0.0014 Score=73.92 Aligned_cols=119 Identities=15% Similarity=0.240 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 573 EKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEK 652 (1170)
Q Consensus 573 EaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ 652 (1170)
+.|...++.+...|..+-|.|.+. |-.+|.+...+|+.+..|+..-..++...+.+|..|.++|..++..++.+=.+
T Consensus 180 R~Ea~~L~~et~~~EekEqqLv~d---cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~E 256 (306)
T PF04849_consen 180 RSEASQLKTETDTYEEKEQQLVLD---CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAE 256 (306)
T ss_pred HHHHHHhhHHHhhccHHHHHHHHH---HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444455555444 66778888888999998888888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 653 KMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 696 (1170)
Q Consensus 653 ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq 696 (1170)
..+|.+-|....+.. ..|+.++.+++.++.|....|.|+...
T Consensus 257 nEeL~q~L~~ske~Q--~~L~aEL~elqdkY~E~~~mL~EaQEE 298 (306)
T PF04849_consen 257 NEELQQHLQASKESQ--RQLQAELQELQDKYAECMAMLHEAQEE 298 (306)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999877555 678999999999999988888888763
No 70
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.67 E-value=0.0045 Score=66.08 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=73.2
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHH----
Q 001058 545 DQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL---- 620 (1170)
Q Consensus 545 nqls~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEs---- 620 (1170)
.+++.-|-++...++.- |..|..+|..++.+.+..++.|.++...+.|+-.-|.....++..|++++..
T Consensus 12 ~~iK~YYndIT~~NL~l-------IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd 84 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLEL-------IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD 84 (201)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544433332 3345555555555555666666666666666655555555555555544442
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh--CCCCCccHHHHHHHHHHHHHHHHH
Q 001058 621 ------LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL----KME--GESGDGTLQQHADHIQNELEELVK 688 (1170)
Q Consensus 621 ------LrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq----kLE--~r~edA~LQeRIkqiQ~kLeELEK 688 (1170)
++.++....+++..|.-.-..++..+..++.+..+|++-.. ++. .+--+..|+.+|..+...|+.-+.
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223222333333332222222222222222222221111 111 011125577777777777777777
Q ss_pred HHHHHHHHhCccc
Q 001058 689 ILNDRCKQYGLRA 701 (1170)
Q Consensus 689 aL~Earqq~GL~a 701 (1170)
.|++.....+|..
T Consensus 165 qL~evl~~~nldp 177 (201)
T PF13851_consen 165 QLNEVLAAANLDP 177 (201)
T ss_pred HHHHHHHHcCCCH
Confidence 7777777666543
No 71
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.66 E-value=0.0033 Score=70.92 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 001058 614 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM-EGESGDGTLQQHADHIQNELEELVKILND 692 (1170)
Q Consensus 614 LKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkL-E~r~edA~LQeRIkqiQ~kLeELEKaL~E 692 (1170)
.++++...+.+|.+.+.++.+++.+|+.++.+++.++.++..+....... +..- ..++.+|.+++.+|+.++..+.
T Consensus 194 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~~l~~~~~~l~~~~~~l~- 270 (423)
T TIGR01843 194 SRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEEL--TEAQARLAELRERLNKARDRLQ- 270 (423)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh-
Confidence 35666666777777777777777777777777777777766655544321 1222 4567778888888877765553
Q ss_pred HHHHhCccc
Q 001058 693 RCKQYGLRA 701 (1170)
Q Consensus 693 arqq~GL~a 701 (1170)
++-|+|
T Consensus 271 ---~~~i~A 276 (423)
T TIGR01843 271 ---RLIIRS 276 (423)
T ss_pred ---hcEEEC
Confidence 444555
No 72
>PRK02224 chromosome segregation protein; Provisional
Probab=97.65 E-value=0.0026 Score=79.37 Aligned_cols=12 Identities=0% Similarity=-0.017 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 001058 630 KQSGDVASKLTL 641 (1170)
Q Consensus 630 KQISELqsqIA~ 641 (1170)
.++.+++.+|..
T Consensus 627 ~~l~~~r~~i~~ 638 (880)
T PRK02224 627 ERLAEKRERKRE 638 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333334443333
No 73
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.63 E-value=0.0038 Score=75.00 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=8.4
Q ss_pred ccHHHHHHHHHHHHH
Q 001058 670 GTLQQHADHIQNELE 684 (1170)
Q Consensus 670 A~LQeRIkqiQ~kLe 684 (1170)
..|+++|+.++.+|.
T Consensus 286 e~LkeqLr~~qe~lq 300 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQ 300 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655544
No 74
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.63 E-value=0.00016 Score=77.83 Aligned_cols=64 Identities=20% Similarity=0.391 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 001058 392 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 455 (1170)
Q Consensus 392 kqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~L 455 (1170)
++..+++|+.+|+|+.|.|+..||+.+| +|..|+.+.+.-|++.+|...+|.|.|++|+.++-.
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 5677899999999999999999999999 799999999999999999888999999999877433
No 75
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.60 E-value=0.00017 Score=74.42 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 001058 392 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTAL 453 (1170)
Q Consensus 392 kqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM 453 (1170)
.+-+..+|..||.+++|+|..+.|+++| ++-+++.++|.+||+.+-+|..|.|+|.+||.+|
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 4678999999999999999999999999 6889999999999999999999999999999433
No 76
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.57 E-value=0.0045 Score=67.74 Aligned_cols=135 Identities=12% Similarity=0.205 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHHHHH
Q 001058 561 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKR-----EVELLAKKYEEKYKQSGDV 635 (1170)
Q Consensus 561 EAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKr-----EIEsLrqKYEE~~KQISEL 635 (1170)
+++.+.+|+..+......+....+....+.++|..++......+.++++++..+.. .-+.|...+++.+.-+.++
T Consensus 60 d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~em 139 (264)
T PF06008_consen 60 DVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEM 139 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555556667777777777777777777665544 2223444444444444444
Q ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 636 A-----SKLTLEEATFRDIQEKKMELYQAILKMEGESGD--GTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 636 q-----sqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ed--A~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
+ .+.+..|.++..++.=+..+++.+.+..+..+. ..+...|.+|..+|.+|.++|+++..
T Consensus 140 r~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 140 RKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 234455667777777777777776654322211 34677889999999999888888654
No 77
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.56 E-value=0.0043 Score=80.69 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=55.0
Q ss_pred HHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 001058 596 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYK------------QSGDVASKLTLEEATFRDIQ----EKKMELYQA 659 (1170)
Q Consensus 596 ~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~K------------QISELqsqIA~LEAeLQDIQ----eQ~~eLqqA 659 (1170)
.+...+.+|+.+..++..++.+++.++.++++..+ ..+++..+|..++.+++..+ +++.+|+++
T Consensus 679 ~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~ 758 (1201)
T PF12128_consen 679 RKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQ 758 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555554444333221 12333344444444444333 344445555
Q ss_pred HH-HHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Q 001058 660 IL-KMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPT 704 (1170)
Q Consensus 660 Lq-kLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~GL~aK~~ 704 (1170)
+. +|.+++.|. .+|..|+.+|++|++.|..+.+.--++..|-
T Consensus 759 ~~~eL~~~GvD~---~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~ 801 (1201)
T PF12128_consen 759 YNQELAGKGVDP---ERIQQLKQEIEQLEKELKRIEERRAEVIEYE 801 (1201)
T ss_pred HHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44 355777664 4577777777777777777666555555443
No 78
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.56 E-value=0.0025 Score=78.65 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=32.4
Q ss_pred CCCCCchhhHHHHhhhcHHHHHHH-HHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 532 QKSKVPELEKHLMDQLSKEEQESL-NAKLKEA----TEADKKVEELEKEILTSREKIQFCST 588 (1170)
Q Consensus 532 ~kS~~P~LDd~lLnqls~EEe~~L-nserqEA----EEaqKKL~ELEaEI~~lreEIE~lrt 588 (1170)
..+.-|++-..++|.+-..|.+.- +.++..+ +.+++++.+++.++.....+++.|+.
T Consensus 161 ~~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 161 FRSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777666432 2222221 23666777777766666555555544
No 79
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.55 E-value=0.00017 Score=83.68 Aligned_cols=68 Identities=22% Similarity=0.404 Sum_probs=61.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHH------HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHh
Q 001058 393 QKYTKVFVQVDIDRDGKITGEQAYNLF------LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 460 (1170)
Q Consensus 393 qeyreaF~~fDkDgDG~ISgdELr~~f------LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~l 460 (1170)
..+..+|+.+|.|+.|.|+.+|++..+ +.-.++++++.++-+..|.|+||+|++.||+.|.+|+.+.+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~~ 620 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRRR 620 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcchh
Confidence 357789999999999999999999887 34578899999999999999999999999999999999854
No 80
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.55 E-value=0.0051 Score=76.37 Aligned_cols=151 Identities=16% Similarity=0.152 Sum_probs=84.5
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHH
Q 001058 545 DQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKK 624 (1170)
Q Consensus 545 nqls~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqK 624 (1170)
.-++.+|-....+ ..+++++++..|+.++....++|+.++.+++.|+....++.++++++.++-+.+.+-++.+...
T Consensus 546 ~vlreeYi~~~~~---ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 546 KVLREEYIEKQDL---AREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444433 2334556666666666666666666666555555555555555555554444444444433222
Q ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---------ccHHHHHHHHHHHHH
Q 001058 625 YE-----------EKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD---------GTLQQHADHIQNELE 684 (1170)
Q Consensus 625 YE-----------E~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ed---------A~LQeRIkqiQ~kLe 684 (1170)
.. +..+++..++.+|..+.+.|++++.+++.++..++.-+..+.. ..+++-|++--.+|+
T Consensus 623 l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~ 702 (717)
T PF10168_consen 623 LNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEID 702 (717)
T ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 11 1237777777888888889999998888777666643322211 223333444445666
Q ss_pred HHHHHHHHHHHHhC
Q 001058 685 ELVKILNDRCKQYG 698 (1170)
Q Consensus 685 ELEKaL~Earqq~G 698 (1170)
+|.|.++...++.|
T Consensus 703 ~~v~~ik~i~~~~~ 716 (717)
T PF10168_consen 703 ELVKQIKNIKKIVN 716 (717)
T ss_pred HHHHHHHHHHHhhC
Confidence 66677776666655
No 81
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=97.55 E-value=0.0049 Score=71.11 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=32.7
Q ss_pred CCchhhHHHHhhhcHHHHHHHHHhHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 535 KVPELEKHLMDQLSKEEQESLNAKLK-EA----TEADKKVEELEKEILTSREKIQFCST 588 (1170)
Q Consensus 535 ~~P~LDd~lLnqls~EEe~~Lnserq-EA----EEaqKKL~ELEaEI~~lreEIE~lrt 588 (1170)
.-|++-..+++.+-..|.+..-..+. .+ +.++.++.+++.++....++++.|+.
T Consensus 141 ~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 141 VDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666543322111 12 22777888888888777777776666
No 82
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.55 E-value=0.0004 Score=78.35 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 569 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRD 648 (1170)
Q Consensus 569 L~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQD 648 (1170)
+.+++.++.....|.+.|..=+.+|... .....++..+.+++..++.|.++|.++++++.++..+|.+.|..+|.++.+
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~~~-~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLEEE-SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp --------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556656666666565555444411 111222344444444455555555555544444444444444444444444
Q ss_pred HHHHHH
Q 001058 649 IQEKKM 654 (1170)
Q Consensus 649 IQeQ~~ 654 (1170)
++++..
T Consensus 90 l~~eE~ 95 (314)
T PF04111_consen 90 LDEEEE 95 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 83
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.55 E-value=0.005 Score=66.74 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH------
Q 001058 577 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK-------LTLEE------ 643 (1170)
Q Consensus 577 ~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsq-------IA~LE------ 643 (1170)
...-++|+.+..++.++.......+..+.++..++..+..+++..+.+++.....|.+|+.. |..+|
T Consensus 88 ~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~ 167 (237)
T PF00261_consen 88 QSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKA 167 (237)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 33334444444444444444444444444444444444444443333333333333333322 22222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 644 -ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 696 (1170)
Q Consensus 644 -AeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq 696 (1170)
.....+..+|..|.+.|..++.+. ..+..++..++..|+.|+..|.....+
T Consensus 168 ~~re~~~e~~i~~L~~~lkeaE~Ra--e~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 168 SEREDEYEEKIRDLEEKLKEAENRA--EFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445555666666666666666 333566666667777776666554443
No 84
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.0044 Score=74.27 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS 632 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQI 632 (1170)
...+++-|+.++..++.++.-|+.=|.++...++..+..|..+..++.+-..|+|.|+++.++++++|
T Consensus 257 ~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 257 DPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555666666666655555555555555555555555555555555555555555443
No 85
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.52 E-value=0.00031 Score=72.61 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 001058 384 WPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 461 (1170)
Q Consensus 384 Wp~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~lk 461 (1170)
+..+++.++++|+++|..+|.|+||+|..++|+.+| +|...++++|..|+.++ .|-|+|--|+ -|+..+++
T Consensus 23 Famf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FL---TmfGekL~ 95 (171)
T KOG0031|consen 23 FAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFL---TMFGEKLN 95 (171)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHH---HHHHHHhc
Confidence 335889999999999999999999999999999999 78889999999999886 5789999998 67888888
Q ss_pred CCC
Q 001058 462 GRP 464 (1170)
Q Consensus 462 G~p 464 (1170)
|..
T Consensus 96 gtd 98 (171)
T KOG0031|consen 96 GTD 98 (171)
T ss_pred CCC
Confidence 863
No 86
>PLN02964 phosphatidylserine decarboxylase
Probab=97.51 E-value=0.00021 Score=87.13 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=61.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--Hc-CCCCHHH---HHHHHHHhCCCCCCCcCHHHHHHH
Q 001058 379 QSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LS-WRLPREV---LKQVWDLSDQDNDGMLSLKEFCTA 452 (1170)
Q Consensus 379 qsq~~Wp~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~f--LG-S~Lpeee---L~qIWdLaD~D~DGkLdfdEF~iA 452 (1170)
-.+.+|-.++..|+++++++|+.+|+|++|+| ++.+| ++ ...++++ +.+|+.++|.|++|.|+|+||+.+
T Consensus 129 ~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~l 204 (644)
T PLN02964 129 YCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDL 204 (644)
T ss_pred heeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHH
Confidence 34667877899999999999999999999998 67777 45 3667666 899999999999999999999976
Q ss_pred HH
Q 001058 453 LY 454 (1170)
Q Consensus 453 M~ 454 (1170)
|.
T Consensus 205 L~ 206 (644)
T PLN02964 205 IK 206 (644)
T ss_pred HH
Confidence 65
No 87
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.48 E-value=0.0037 Score=77.27 Aligned_cols=163 Identities=8% Similarity=0.103 Sum_probs=93.2
Q ss_pred CCCCchhhHHHHhhhcHHHHH-HHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhHHH
Q 001058 533 KSKVPELEKHLMDQLSKEEQE-SLNAKLKEAT----EADKKVEELEKEILTSREKIQFCSTKMQ--ELILYKSRCDNRLN 605 (1170)
Q Consensus 533 kS~~P~LDd~lLnqls~EEe~-~LnserqEAE----EaqKKL~ELEaEI~~lreEIE~lrtQMQ--ELqm~kqR~edELn 605 (1170)
.+..|++-..++|.+-..|-+ .++.+.+++. .+++++.+++.++....++++.|+++-. ++....+...+++.
T Consensus 235 ~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~ 314 (726)
T PRK09841 235 TGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIV 314 (726)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 456677777888887777763 3444333333 2777777777777777777777766432 11111111222234
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 001058 606 EITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEE 685 (1170)
Q Consensus 606 eI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeE 685 (1170)
++..+++.++.....|...|.+.+=++.+|+.+++.++.++.+++.++.++-+...+ -..|+.+.+..+..++.
T Consensus 315 ~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~------~~~L~R~~~~~~~lY~~ 388 (726)
T PRK09841 315 NVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQE------VLRLSRDVEAGRAVYLQ 388 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH------HHHHHHHHHHHHHHHHH
Confidence 444444444444445555555555556666666666666655555555444333222 24577777777788888
Q ss_pred HHHHHHHHHHHhCccc
Q 001058 686 LVKILNDRCKQYGLRA 701 (1170)
Q Consensus 686 LEKaL~Earqq~GL~a 701 (1170)
|-+.++|+.-...+..
T Consensus 389 lL~r~~e~~i~~a~~~ 404 (726)
T PRK09841 389 LLNRQQELSISKSSAI 404 (726)
T ss_pred HHHHHHHHHHHhccCC
Confidence 7777777766666543
No 88
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.48 E-value=0.004 Score=69.17 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001058 645 TFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 645 eLQDIQeQ~~eLqqALq 661 (1170)
-|.+.+.++..|+..-.
T Consensus 149 ile~qk~dk~~Le~kq~ 165 (265)
T COG3883 149 ILEQQKEDKKSLEEKQA 165 (265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 89
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.47 E-value=0.0062 Score=71.45 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=28.1
Q ss_pred CchhhHHHHhhhcHHHHHHHH-HhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 536 VPELEKHLMDQLSKEEQESLN-AKLKEA----TEADKKVEELEKEILTSREKIQFCST 588 (1170)
Q Consensus 536 ~P~LDd~lLnqls~EEe~~Ln-serqEA----EEaqKKL~ELEaEI~~lreEIE~lrt 588 (1170)
-|++-..+++.+-..|.+... .+++++ +.+++++.+++.++....+++..|+.
T Consensus 132 dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 132 DPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555544321 111222 12666777777777666666665554
No 90
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.46 E-value=0.00025 Score=72.24 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCC--CCCCcCHHHHHHHHHHHHHH
Q 001058 387 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQD--NDGMLSLKEFCTALYLMERY 459 (1170)
Q Consensus 387 LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D--~DGkLdfdEF~iAM~LIe~~ 459 (1170)
.+++.+.+++++|..||..+||+|++.++..+| +|.+.++.+|.+.....+.+ +--+|+|++|+-++.-|...
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 567788999999999999999999999999999 89999999999999988887 55789999999655544444
No 91
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=0.0058 Score=80.06 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=8.0
Q ss_pred Ccc-CCCCCCCCccc
Q 001058 886 SWG-TFDTHYDAESV 899 (1170)
Q Consensus 886 ~wg-~fd~~~d~dsv 899 (1170)
-|. +|. +.|.|-|
T Consensus 1149 ~w~~~~~-~~~~~~i 1162 (1311)
T TIGR00606 1149 LWRSTYR-GQDIEYI 1162 (1311)
T ss_pred HHHHHcC-ccHHHHh
Confidence 476 666 5566655
No 92
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.44 E-value=0.0037 Score=75.45 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 625 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKY 625 (1170)
+..++.+++.+|+.+-+.++....-.+.+.....++.+.|..+.++...++.|++.|.+.|
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY 340 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSY 340 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4455555555555555555544444455556666667777777777777777777776663
No 93
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.43 E-value=0.0078 Score=61.52 Aligned_cols=95 Identities=19% Similarity=0.150 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 646 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeL 646 (1170)
.+|..|++++..++...+.+......-...+.++..+|..++.++..++.++..|+.+-+++.+++...+.+|..||...
T Consensus 24 ~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 24 DHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444443333333333333333333334444444444444455555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 001058 647 RDIQEKKMELYQAIL 661 (1170)
Q Consensus 647 QDIQeQ~~eLqqALq 661 (1170)
.++.+.+..++++..
T Consensus 104 ~~~~~~l~~~E~ek~ 118 (140)
T PF10473_consen 104 SSLENLLQEKEQEKV 118 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555533
No 94
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.43 E-value=0.005 Score=76.39 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001058 576 ILTSREKIQFCSTKMQELILYKSRCDN 602 (1170)
Q Consensus 576 I~~lreEIE~lrtQMQELqm~kqR~ed 602 (1170)
.++.++|.+.||.++.+|......|+.
T Consensus 381 ~qe~~~e~eqLr~elaql~a~r~q~ek 407 (980)
T KOG0980|consen 381 AQENREEQEQLRNELAQLLASRTQLEK 407 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555544444433
No 95
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.42 E-value=2.4e-05 Score=75.57 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=30.6
Q ss_pred CcccccccccccccCCHHHHHHHHhHHhhhhcCC
Q 001058 1 MQVWSHADQRKAGFLNRAEFFNALKLVTVAQSKR 34 (1170)
Q Consensus 1 ~qvWa~Ad~~r~GfLg~~eF~~am~lvs~aQs~~ 34 (1170)
++||.+||.++.|||.+.||+.||.||..++.|.
T Consensus 46 ~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~~~~ 79 (104)
T PF12763_consen 46 AQIWNLADIDNDGKLDFEEFAIAMHLINRKLNGN 79 (104)
T ss_dssp HHHHHHH-SSSSSEEEHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhcCCCCCcCCHHHHHHHHHHHHHHhcCC
Confidence 4799999999999999999999999999988765
No 96
>PRK11519 tyrosine kinase; Provisional
Probab=97.42 E-value=0.0058 Score=75.58 Aligned_cols=163 Identities=10% Similarity=0.070 Sum_probs=99.8
Q ss_pred CCCCchhhHHHHhhhcHHHHHHHHHhHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhHHH
Q 001058 533 KSKVPELEKHLMDQLSKEEQESLNAKLK-EAT----EADKKVEELEKEILTSREKIQFCSTKMQ--ELILYKSRCDNRLN 605 (1170)
Q Consensus 533 kS~~P~LDd~lLnqls~EEe~~Lnserq-EAE----EaqKKL~ELEaEI~~lreEIE~lrtQMQ--ELqm~kqR~edELn 605 (1170)
.+.-|++-..++|.+-..|-+.....+. +++ .+++++.+++.++....++++.|+.+-. ++........+.+.
T Consensus 235 ~~~dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~ 314 (719)
T PRK11519 235 TGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMV 314 (719)
T ss_pred EcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 4456677777777777766554432222 222 2777888888888777777777776433 22233333333455
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 001058 606 EITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEE 685 (1170)
Q Consensus 606 eI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeE 685 (1170)
++..++.+++.++..|...|.+.+-++.+|.++++.++.++.+++.++..+.+...+ . ..|+.+.+..+..++.
T Consensus 315 ~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~----~--~~L~Re~~~~~~lY~~ 388 (719)
T PRK11519 315 NIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQE----I--VRLTRDVESGQQVYMQ 388 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH----H--HHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666777777777777777666666655443332 2 4566777777777877
Q ss_pred HHHHHHHHHHHhCccc
Q 001058 686 LVKILNDRCKQYGLRA 701 (1170)
Q Consensus 686 LEKaL~Earqq~GL~a 701 (1170)
|-+.+.|++-...+..
T Consensus 389 lL~r~~e~~i~~a~~~ 404 (719)
T PRK11519 389 LLNKQQELKITEASTV 404 (719)
T ss_pred HHHHHHHHhHHhcCCC
Confidence 7777777766555433
No 97
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.41 E-value=0.0066 Score=77.19 Aligned_cols=123 Identities=14% Similarity=0.196 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 577 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 656 (1170)
Q Consensus 577 ~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eL 656 (1170)
...+++.+.++.+++++.....+.+..|..+...+.++++++|..+.+.++..+.....+..|+.+..++.+++..+..+
T Consensus 380 ~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~ 459 (1293)
T KOG0996|consen 380 KELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKE 459 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHH
Confidence 34444566677788888888888888888888888889999988888888888777777777777777777777777666
Q ss_pred HHHHHHHh--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001058 657 YQAILKME--GESGDGTLQQHADHIQNELEELVKILNDRCKQYGL 699 (1170)
Q Consensus 657 qqALqkLE--~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~GL 699 (1170)
+..|.+.. =.++...+.++|..++.+|..+.+.+++++-++.+
T Consensus 460 ~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~v 504 (1293)
T KOG0996|consen 460 ERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDV 504 (1293)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666533 11223566777777777777777777777665554
No 98
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.41 E-value=0.0054 Score=76.06 Aligned_cols=131 Identities=21% Similarity=0.290 Sum_probs=74.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001058 552 QESLNAKLKEATEADKKVEELEKEILTSREKIQ--FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 629 (1170)
Q Consensus 552 e~~LnserqEAEEaqKKL~ELEaEI~~lreEIE--~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~ 629 (1170)
+..|...|+|+++++.--.+...++.+..+-|| .+-++|-|=. ...+++||..+++++..+.-++|.|+.++++.=
T Consensus 282 qrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEER--aesLQ~eve~lkEr~deletdlEILKaEmeekG 359 (1243)
T KOG0971|consen 282 QRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEER--AESLQQEVEALKERVDELETDLEILKAEMEEKG 359 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455555555544444444555555555555 5555555422 234456667777777777777777777776642
Q ss_pred -----------HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 630 -----------KQSGDVASKLTLE-----------EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 630 -----------KQISELqsqIA~L-----------EAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
|||.+.+.+|.+. ....|.+++.++....++.+|+.++ ..|+.++.++...|.+|
T Consensus 360 ~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~k--E~Lsr~~d~aEs~iadl 436 (1243)
T KOG0971|consen 360 SDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQK--ERLSRELDQAESTIADL 436 (1243)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4454444443322 2245555566666666666666666 56667776666666655
No 99
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.41 E-value=0.0036 Score=73.40 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 670 GTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 670 A~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
..|+.+++..+..++.|.+.+.+++-
T Consensus 358 ~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 358 TQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655553
No 100
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.39 E-value=0.00033 Score=71.39 Aligned_cols=59 Identities=17% Similarity=0.386 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHH
Q 001058 392 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCT 451 (1170)
Q Consensus 392 kqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~i 451 (1170)
.+.|-+-.+.||++++|+|.+.|||.+| +|.+|+++++.+++.-.. |.+|.|+|+.|+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk 147 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVK 147 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHH
Confidence 5678889999999999999999999999 899999999999987654 7889999999995
No 101
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.39 E-value=0.012 Score=79.01 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCCCCCcCHHHHHH
Q 001058 427 EVLKQVWDLSDQDNDGMLSLKEFCT 451 (1170)
Q Consensus 427 eeL~qIWdLaD~D~DGkLdfdEF~i 451 (1170)
+.|..|+..+-.-..|+|...+|..
T Consensus 770 ~~ls~ii~~fQA~~Rg~l~r~~~~k 794 (1930)
T KOG0161|consen 770 EKLSQIITLFQAAIRGYLARKEFKK 794 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666677888888854
No 102
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.0078 Score=71.73 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------H-------HHHHHHhhhhhHHHHHHHHHHhc
Q 001058 564 EADKKVEELEKEILTSREKIQFCSTKM----------------------Q-------ELILYKSRCDNRLNEITERVSGD 614 (1170)
Q Consensus 564 EaqKKL~ELEaEI~~lreEIE~lrtQM----------------------Q-------ELqm~kqR~edELneI~eEvsaL 614 (1170)
++++++.||+++|+..|.+++.++.-+ | ....++-.++++|..+..++...
T Consensus 47 ~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~ 126 (772)
T KOG0999|consen 47 DLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNV 126 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999988888887554411 1 22233444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 001058 615 KREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES 667 (1170)
Q Consensus 615 KrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ 667 (1170)
+.|.++|.++..+...--+.++.+--++..+|++.+-+-..|-++|.+||..+
T Consensus 127 q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEEN 179 (772)
T KOG0999|consen 127 QEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEEN 179 (772)
T ss_pred HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555554444333322233333334456677777777777777777766433
No 103
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.37 E-value=0.0047 Score=61.63 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=7.9
Q ss_pred cHHHHHHHHHHHHHHH
Q 001058 671 TLQQHADHIQNELEEL 686 (1170)
Q Consensus 671 ~LQeRIkqiQ~kLeEL 686 (1170)
.|+.+|..++..+++|
T Consensus 102 ~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 102 QLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555555
No 104
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.37 E-value=0.0072 Score=80.97 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 561 EATEADKKVEELEKEILTSREKIQ 584 (1170)
Q Consensus 561 EAEEaqKKL~ELEaEI~~lreEIE 584 (1170)
|..+++.+|..|+.++..+.+.+.
T Consensus 958 Ek~~~e~~~~~l~~e~~~~~e~~~ 981 (1930)
T KOG0161|consen 958 EKNAAENKLKNLEEEINSLDENIS 981 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666555544333333
No 105
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=97.37 E-value=0.0073 Score=62.61 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVE 619 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIE 619 (1170)
.++++.+++.|+..+++++..+...+..+......+...++...+++..++.+++
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 140 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIK 140 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555555554444444444333333333333333333333
No 106
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.37 E-value=0.012 Score=71.70 Aligned_cols=128 Identities=16% Similarity=0.229 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHH---HHHHHHHHHHHHHHH
Q 001058 560 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL---AKKYEEKYKQSGDVA 636 (1170)
Q Consensus 560 qEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsL---rqKYEE~~KQISELq 636 (1170)
+|.++++++|+++..++..+..+++.++.++.++.....+...++.++.++++-.++-++.| +.-+++++..|..-.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~ 407 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE 407 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 35666778888888888888888888888877777777766666666666666555555555 455666666666767
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHHH
Q 001058 637 SKLTLEEATFRDIQEKKMELYQAILKMEGESGD--GTLQQHADHIQNELEELV 687 (1170)
Q Consensus 637 sqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ed--A~LQeRIkqiQ~kLeELE 687 (1170)
.++..|..++...+.-+.+-...|.......+. ..+.++|+.++.++++|+
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~ 460 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIE 460 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777655555555543322222 334556666666666664
No 107
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.36 E-value=0.0044 Score=67.13 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 590 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 656 (1170)
Q Consensus 590 MQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eL 656 (1170)
+..|.......+.+|..+..++...++.++....+|++....+..++..|..+|..+..+..++.+|
T Consensus 80 ~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eL 146 (237)
T PF00261_consen 80 RKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKEL 146 (237)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Confidence 3344455555566666677777777777777777777776666555555444433333333333333
No 108
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.36 E-value=0.01 Score=73.77 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 590 MQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE 643 (1170)
Q Consensus 590 MQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LE 643 (1170)
++++..+..-.+++.+.+++..+.++.+=..|..||.+.+||+..-+..|-+++
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~ 465 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVE 465 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444444445555555555555555555555555555555555544443333333
No 109
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.35 E-value=0.0079 Score=67.70 Aligned_cols=73 Identities=27% Similarity=0.239 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 001058 560 KEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS 632 (1170)
Q Consensus 560 qEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQI 632 (1170)
..+.++..+..++.+++..++++.+-+..+..++....+.+-.+.+++.++|..+|.+...+-.+.+++.+.+
T Consensus 20 ~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 20 EEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777766666666666666666666666666666666666666555555444444443333
No 110
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.34 E-value=0.029 Score=67.72 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELIL 595 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm 595 (1170)
+.+++.+|++++...+++.+.|+.+.+++..
T Consensus 169 l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~ 199 (546)
T PF07888_consen 169 LREEVERLEAELEQEEEEMEQLKQQQKELTE 199 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 111
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.34 E-value=0.0014 Score=62.61 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHH-------HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHh
Q 001058 391 EVQKYTKVFVQVDIDRDGKITGEQAYNLF-------LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYR 460 (1170)
Q Consensus 391 EkqeyreaF~~fDkDgDG~ISgdELr~~f-------LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~l 460 (1170)
-+.-+..+|..+-. +.+.|+..|++.+| ++.....+.|.+|+...|.|+||.|+|.||+..+--+..+.
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac 81 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIAC 81 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 35678899999974 45799999999999 34455688999999999999999999999997766665443
No 112
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=97.34 E-value=0.0018 Score=69.04 Aligned_cols=93 Identities=17% Similarity=0.286 Sum_probs=55.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHH
Q 001058 552 QESLNAKLKEATEADKKVEELEKEILT----SREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEE 627 (1170)
Q Consensus 552 e~~LnserqEAEEaqKKL~ELEaEI~~----lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE 627 (1170)
+-+|.++|++.+ .+|..++.+..+ -..+....+.++++|-.|+.+-..+|.+ -.......+..++..++.
T Consensus 98 evrLkrELa~Le---~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~---~~~~~~~~l~~v~~Dl~~ 171 (195)
T PF12761_consen 98 EVRLKRELAELE---EKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE---GRSKSGKNLKSVREDLDT 171 (195)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc---cCCCCCCCHHHHHHHHHH
Confidence 445665444444 777777777765 2345567777888888888765444432 222344445556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001058 628 KYKQSGDVASKLTLEEATFRDIQ 650 (1170)
Q Consensus 628 ~~KQISELqsqIA~LEAeLQDIQ 650 (1170)
+..||..|++-|+.-+.+|++++
T Consensus 172 ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 172 IEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666666666666665554
No 113
>PLN02964 phosphatidylserine decarboxylase
Probab=97.33 E-value=0.00059 Score=83.30 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 001058 387 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 455 (1170)
Q Consensus 387 LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~L 455 (1170)
.+.++...++++|..+|.|++|.|+.+|+..+| ++...++++|.++++.+|.|++|+|+++||+.+|..
T Consensus 173 pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 173 PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 445555679999999999999999999999999 456688999999999999999999999999954433
No 114
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=97.33 E-value=0.0048 Score=63.94 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001058 568 KVEELEKEILTSREKIQFCSTKMQELILYKSR 599 (1170)
Q Consensus 568 KL~ELEaEI~~lreEIE~lrtQMQELqm~kqR 599 (1170)
++.+.+.++..+.+|++.++.+.+++......
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~ 113 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEK 113 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333333
No 115
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.31 E-value=0.0098 Score=78.36 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=46.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 592 ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVA--------SKLTLEEATFRDIQEKKMELYQAILKM 663 (1170)
Q Consensus 592 ELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELq--------sqIA~LEAeLQDIQeQ~~eLqqALqkL 663 (1170)
++.....++.+++.....++.+++.+++.|+.+.+++.+++.+|+ +.+.+++.+++++.++......++...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a 359 (1353)
T TIGR02680 280 QLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREA 359 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444443 223333334444444444333333333
Q ss_pred hCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001058 664 EGESGDGTLQQHADHIQNELEELVKILNDRCKQYG 698 (1170)
Q Consensus 664 E~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~G 698 (1170)
+.+. ..++.+++++...++++++.+.++...++
T Consensus 360 ~~~~--e~~~~~~~~~~~r~~~~~~~l~~~~~el~ 392 (1353)
T TIGR02680 360 ESRL--EEERRRLDEEAGRLDDAERELRAAREQLA 392 (1353)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 33445555555555555555555544444
No 116
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.31 E-value=0.0047 Score=72.28 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHHhh
Q 001058 386 KMTHSEVQKYTKVFVQV 402 (1170)
Q Consensus 386 ~LSpEEkqeyreaF~~f 402 (1170)
.|+..|.-.|-..|...
T Consensus 85 ~mt~~Dll~F~~~~~~~ 101 (493)
T KOG0804|consen 85 YMTSHDLLRFCASFIKQ 101 (493)
T ss_pred cccHHHHHHHHHHHhhh
Confidence 57888887777766543
No 117
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=0.0068 Score=77.05 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 577 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERV----SGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEK 652 (1170)
Q Consensus 577 ~~lreEIE~lrtQMQELqm~kqR~edELneI~eEv----saLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ 652 (1170)
.+.+.+++.+++++..|.....+|+.+|+++...+ ...+.|++.++.++....+++.++..+++..|.+|..+...
T Consensus 436 e~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~ 515 (1293)
T KOG0996|consen 436 EKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSR 515 (1293)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445555555555555544433 26666667777777777777777777777777766666655
Q ss_pred HHHHHHHHH
Q 001058 653 KMELYQAIL 661 (1170)
Q Consensus 653 ~~eLqqALq 661 (1170)
+..+...+.
T Consensus 516 ~~~~~~~~e 524 (1293)
T KOG0996|consen 516 HETGLKKVE 524 (1293)
T ss_pred HHHHHHHHH
Confidence 554444444
No 118
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.30 E-value=0.013 Score=76.45 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=19.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q 001058 671 TLQQHADHIQNELEELVKILNDRCKQYGLRA 701 (1170)
Q Consensus 671 ~LQeRIkqiQ~kLeELEKaL~Earqq~GL~a 701 (1170)
.++++-.++..++++|+++++...+..|+..
T Consensus 740 ~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 740 EIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3344444555666677777777777777765
No 119
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=97.29 E-value=0.024 Score=63.08 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=39.7
Q ss_pred HHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHH
Q 001058 555 LNAKLKEATE-ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE 626 (1170)
Q Consensus 555 LnserqEAEE-aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYE 626 (1170)
++.++++.++ ..+++..|+.|+..+..+|...+.++.-|..|+.. + .--..-+|+.|+++|+.|+...+
T Consensus 68 ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~-E--YPvK~vqIa~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 68 AKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDH-E--YPVKAVQIANLVRQLQQLKDSQQ 137 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554 55667777777666666666666666666666552 1 22222356666666666654444
No 120
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.29 E-value=0.00035 Score=74.33 Aligned_cols=63 Identities=29% Similarity=0.445 Sum_probs=51.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHH------Hc-------CCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 001058 393 QKYTKVFVQVDIDRDGKITGEQAYNLF------LS-------WRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 455 (1170)
Q Consensus 393 qeyreaF~~fDkDgDG~ISgdELr~~f------LG-------S~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~L 455 (1170)
++++=+|+.+|.|++|+|+.+|+-.++ .+ ...+++-+..||..+|.|+||.|+++||+.++.-
T Consensus 100 ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 100 EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 445566999999999999999998887 12 1235778899999999999999999999866543
No 121
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.29 E-value=0.015 Score=73.74 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=22.1
Q ss_pred HHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 658 QAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 696 (1170)
Q Consensus 658 qALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq 696 (1170)
+-|.+|+..+++. +++|.+++.+|..|||.+.+..+.
T Consensus 1710 ~~l~dLe~~y~~~--~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRN--EQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred HHHHHHHHHHhhh--hHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344455555332 556777777777777776666654
No 122
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=97.28 E-value=0.0033 Score=71.23 Aligned_cols=129 Identities=10% Similarity=0.078 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELIL--YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 642 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm--~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~L 642 (1170)
+++++.+++.++.+.+.++..|+.+-..+.. ........+.++..++.+++.++..++..|.+.+=++..|+.+|+.+
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l 254 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSL 254 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH
Confidence 5666666666666666666655554332211 11111122333344444444444444444333344455555555555
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 643 EATFRDIQEKKMEL-YQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 643 EAeLQDIQeQ~~eL-qqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
+.+|+..+.++..- ...+.....++ ..|+.+.+..+..++.+.+.+.+++-
T Consensus 255 ~~~i~~e~~~i~~~~~~~l~~~~~~~--~~L~re~~~a~~~y~~~l~r~~~a~~ 306 (362)
T TIGR01010 255 RKQIDEQRNQLSGGLGDSLNEQTADY--QRLVLQNELAQQQLKAALTSLQQTRV 306 (362)
T ss_pred HHHHHHHHHHhhcCCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544443221 00111111222 45666666655555554444444443
No 123
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.28 E-value=0.01 Score=67.19 Aligned_cols=103 Identities=11% Similarity=0.156 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCC---------
Q 001058 601 DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME--GESGD--------- 669 (1170)
Q Consensus 601 edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE--~r~ed--------- 669 (1170)
+++..++.+++..++.+++.|..+-++..++.+.++..+...+.+++.++.|+..+++.|..|+ +...+
T Consensus 70 E~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~ 149 (314)
T PF04111_consen 70 EKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGP 149 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCC
Confidence 3333444444555555555555444455566677777777777788888888888888888877 33333
Q ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCc
Q 001058 670 ------------GTLQQHADHIQNELEELVKILNDRCKQYGLRAKP 703 (1170)
Q Consensus 670 ------------A~LQeRIkqiQ~kLeELEKaL~Earqq~GL~aK~ 703 (1170)
..-.+.-.+||+-+-++-=.|.=.++++++..+.
T Consensus 150 fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~ 195 (314)
T PF04111_consen 150 FGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR 195 (314)
T ss_dssp EEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS
T ss_pred eeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3356789999999999999999999999988643
No 124
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.26 E-value=0.0069 Score=73.17 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 001058 604 LNEITERVSGDKREVELLAKKYEEKYKQSGDVAS---------------KLTLEEATFRDIQEKKMELYQAILKMEGESG 668 (1170)
Q Consensus 604 LneI~eEvsaLKrEIEsLrqKYEE~~KQISELqs---------------qIA~LEAeLQDIQeQ~~eLqqALqkLE~r~e 668 (1170)
++-+..++...+.-|..|+.+++++..|+...++ .|-..|.+++++-+.+..+++++.+++..-+
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~ 316 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHK 316 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555555444443332 2334567888888888888888887653332
Q ss_pred C--ccHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccccccccCCcccCccccccccc
Q 001058 669 D--GTLQQHADHIQNELEELVKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWD 725 (1170)
Q Consensus 669 d--A~LQeRIkqiQ~kLeELEKaL~Earqq~GL~aK~~~~vElp~gw~~~~qe~a~~w~ 725 (1170)
. ..|..+++.+...|++|++.|+.+..|=-++.+-++|-++=||= =|.|-.||
T Consensus 317 ~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~----se~a~~~~ 371 (629)
T KOG0963|consen 317 AQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGD----SEEANDED 371 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCC----cccccccc
Confidence 2 45677777777778888888877766666666666776665552 24566665
No 125
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.25 E-value=0.0089 Score=73.88 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001058 670 GTLQQHADHIQNELEELVKILNDRCKQYGL 699 (1170)
Q Consensus 670 A~LQeRIkqiQ~kLeELEKaL~Earqq~GL 699 (1170)
..|+.+.+..+..++.|-+.+.|++-+..+
T Consensus 379 ~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~~ 408 (754)
T TIGR01005 379 DALQRDAAAKRQLYESYLTNYRQAASRQNY 408 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 566777777777777776666666665543
No 126
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.025 Score=69.86 Aligned_cols=67 Identities=27% Similarity=0.331 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 618 VELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 618 IEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
++.+..+.-+..+.+..|+.++...++.|.+++.++.++..+|..+.... -.|++++..++.+|+.+
T Consensus 554 le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~--~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 554 LEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKR--KRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 33333333334455555556666667788888888888877777765443 46777777777777776
No 127
>PRK11281 hypothetical protein; Provisional
Probab=97.24 E-value=0.0043 Score=80.04 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 671 TLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 671 ~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
.++.++++.+.+++.|..+++++|.
T Consensus 231 ~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 231 YLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777777777665
No 128
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.015 Score=73.06 Aligned_cols=122 Identities=18% Similarity=0.305 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhhhhhHHHHHHHHHHhcHHHHH
Q 001058 561 EATEADKKVEELEKEILTSREKIQFCSTKMQELI---------------------LYKSRCDNRLNEITERVSGDKREVE 619 (1170)
Q Consensus 561 EAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELq---------------------m~kqR~edELneI~eEvsaLKrEIE 619 (1170)
+.+.+.+++.+|++.+..++++.+.++.+.+++. .+.+.....|+.+..++...++|+.
T Consensus 266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~ 345 (1200)
T KOG0964|consen 266 ESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELS 345 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444667777777777666666554444322111 2233445556666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 001058 620 LLAKKYEEKYKQSGDVASKLTLEEATFRD--------------------IQEKKMELYQAILKMEGESGDGTLQQHADHI 679 (1170)
Q Consensus 620 sLrqKYEE~~KQISELqsqIA~LEAeLQD--------------------IQeQ~~eLqqALqkLE~r~edA~LQeRIkqi 679 (1170)
..+-+|+.++.+-+.+..+|+.++.+.++ |++++..|...|.+...+- ..||.+|.++
T Consensus 346 ~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e--~~lq~e~~~~ 423 (1200)
T KOG0964|consen 346 KIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQE--NILQKEIEDL 423 (1200)
T ss_pred HhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHH
Confidence 77777777665555555555555443333 3445555555555433332 4455555555
Q ss_pred HHHHH
Q 001058 680 QNELE 684 (1170)
Q Consensus 680 Q~kLe 684 (1170)
+++|+
T Consensus 424 e~~l~ 428 (1200)
T KOG0964|consen 424 ESELK 428 (1200)
T ss_pred HHHHH
Confidence 54444
No 129
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=97.20 E-value=0.011 Score=58.98 Aligned_cols=94 Identities=17% Similarity=0.277 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQ----ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 640 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQ----ELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA 640 (1170)
++..|..++.|+..+++++..+..+-. ||..-..+++ ++.....++..++++++.|+.+|+....-+.|-.+.+.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e-~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE-ELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 445566666666666666665554333 3333333332 35666777778888888998899888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001058 641 LEEATFRDIQEKKMELYQA 659 (1170)
Q Consensus 641 ~LEAeLQDIQeQ~~eLqqA 659 (1170)
.|++.++|+|.-+..+-+.
T Consensus 100 EL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 100 ELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888887765443
No 130
>PRK12704 phosphodiesterase; Provisional
Probab=97.19 E-value=0.023 Score=68.46 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=15.6
Q ss_pred HHHHHHHHHhCccc---CccccccccCCcc
Q 001058 688 KILNDRCKQYGLRA---KPTLLVELPFGWQ 714 (1170)
Q Consensus 688 KaL~Earqq~GL~a---K~~~~vElp~gw~ 714 (1170)
+.+..+.|+|.-.. +-..+|.||-.=+
T Consensus 192 ~i~~~a~qr~a~~~~~e~~~~~v~lp~d~m 221 (520)
T PRK12704 192 EILAQAIQRCAADHVAETTVSVVNLPNDEM 221 (520)
T ss_pred HHHHHHHHhhcchhhhhhceeeeecCCchh
Confidence 34556666665322 4456688886433
No 131
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.18 E-value=0.036 Score=59.33 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 569 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRD 648 (1170)
Q Consensus 569 L~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQD 648 (1170)
|.-++.--..|.+++.-++.+|+-++.-.+.. +.+.+++..+|-.+..|+.++..+..|..++++..+-|.+++..
T Consensus 31 ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~ 106 (193)
T PF14662_consen 31 VETAEEGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIET 106 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334666777778888877665443333 44666777777777777777777778888888777777777777
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 001058 649 IQEKKMELYQAILKMEGES 667 (1170)
Q Consensus 649 IQeQ~~eLqqALqkLE~r~ 667 (1170)
+|++...|......+..+.
T Consensus 107 Lqeen~kl~~e~~~lk~~~ 125 (193)
T PF14662_consen 107 LQEENGKLLAERDGLKKRS 125 (193)
T ss_pred HHHHHhHHHHhhhhHHHHH
Confidence 7777777766666655444
No 132
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.18 E-value=0.011 Score=78.43 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=11.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 671 TLQQHADHIQNELEELVKILNDRCKQ 696 (1170)
Q Consensus 671 ~LQeRIkqiQ~kLeELEKaL~Earqq 696 (1170)
.|..+|.++.....-|+.++.+.|++
T Consensus 1357 ~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1357 NLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 133
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.18 E-value=0.04 Score=62.72 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHH
Q 001058 631 QSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKIL 690 (1170)
Q Consensus 631 QISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL 690 (1170)
++..|..+|+.+..++...++++.++++.+.++...= ..+.+++.+++.+|.++++.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I--~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKI--EDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555433222 123344455555555555443
No 134
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.18 E-value=0.019 Score=70.42 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Q 001058 577 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY-----------------KQSGDVASKL 639 (1170)
Q Consensus 577 ~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~-----------------KQISELqsqI 639 (1170)
..|+.+++.+..+++.....+.++..-+.+..+++..+++.+++++.+..+.. .|-.+|..+|
T Consensus 90 ~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL 169 (617)
T PF15070_consen 90 EHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQL 169 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHH
Confidence 44444455444455544444444332223445555555555555543332222 3334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 640 TLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 640 A~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
+.++..+-.+-+++.+|..+|+.-+.++ -.|.+++.+++.+|.+|
T Consensus 170 ~Elq~~Fv~ltne~~elt~~lq~Eq~~~--keL~~kl~~l~~~l~~~ 214 (617)
T PF15070_consen 170 AELQDAFVKLTNENMELTSALQSEQHVK--KELQKKLGELQEKLHNL 214 (617)
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555433333 34444444444444444
No 135
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.18 E-value=0.042 Score=63.72 Aligned_cols=9 Identities=22% Similarity=0.113 Sum_probs=4.6
Q ss_pred CCchhhHHH
Q 001058 535 KVPELEKHL 543 (1170)
Q Consensus 535 ~~P~LDd~l 543 (1170)
.+=.|||.+
T Consensus 72 gVfqlddi~ 80 (499)
T COG4372 72 GVFQLDDIR 80 (499)
T ss_pred hhhhHHHHH
Confidence 444566644
No 136
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.054 Score=60.53 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 634 DVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 634 ELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
.|..-+.++|..+.++..|+.++...+..+.
T Consensus 173 ~l~al~~e~e~~~~~L~~qk~e~~~l~~~~a 203 (265)
T COG3883 173 TLVALQNELETQLNSLNSQKAEKNALIAALA 203 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555555555555433
No 137
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.16 E-value=0.04 Score=58.94 Aligned_cols=133 Identities=17% Similarity=0.262 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 001058 560 KEATEADKKVEELEKEILTSREKIQFCST--KMQ--ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDV 635 (1170)
Q Consensus 560 qEAEEaqKKL~ELEaEI~~lreEIE~lrt--QMQ--ELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISEL 635 (1170)
..+.++..+|.+++.++++++.|..+|+. ..| .|..+... +++|-.++ ..-..|+-.|+.++-..+.++.++
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~-e~~Lpqll---~~h~eEvr~Lr~~LR~~q~~~r~~ 87 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDT-EAELPQLL---QRHNEEVRVLRERLRKSQEQEREL 87 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666555554 111 23222221 22233332 234455555555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 636 ASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQY 697 (1170)
Q Consensus 636 qsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~ 697 (1170)
+++|...+++|..++.++..|++-..+ .+-.+-..|+.++..++.+|++-++.+...-++.
T Consensus 88 ~~klk~~~~el~k~~~~l~~L~~L~~d-knL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 88 ERKLKDKDEELLKTKDELKHLKKLSED-KNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665554443221 1111113455555555555554444444444433
No 138
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.13 E-value=0.0011 Score=70.75 Aligned_cols=71 Identities=23% Similarity=0.223 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhcC
Q 001058 392 VQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYREG 462 (1170)
Q Consensus 392 kqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~lkG 462 (1170)
....+.+|+.||+|++|.|+..|+...| +-.+-.++-|+=.+.++|.|+||+|+++|++..+.-|+.....
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~ 135 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGS 135 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHccc
Confidence 3456778999999999999999977777 3456677788888999999999999999999777777755544
No 139
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=97.12 E-value=0.029 Score=67.51 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCccc---CccccccccCCcc
Q 001058 688 KILNDRCKQYGLRA---KPTLLVELPFGWQ 714 (1170)
Q Consensus 688 KaL~Earqq~GL~a---K~~~~vElp~gw~ 714 (1170)
+.+..+.|+|.-.. .-...|.||-.=+
T Consensus 186 ~i~~~aiqr~a~~~~~e~~~~~v~lp~d~~ 215 (514)
T TIGR03319 186 EILATAIQRYAGDHVAETTVSVVNLPNDEM 215 (514)
T ss_pred HHHHHHHHhccchhhhhheeeeEEcCChhh
Confidence 44566666665322 4446688886433
No 140
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=97.12 E-value=0.033 Score=61.72 Aligned_cols=126 Identities=18% Similarity=0.299 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhhhHHHHHHHHHHhcHHHHHH------------HHHHHHH
Q 001058 573 EKEILTSREKIQFCSTKMQ-------------ELILYKSRCDNRLNEITERVSGDKREVEL------------LAKKYEE 627 (1170)
Q Consensus 573 EaEI~~lreEIE~lrtQMQ-------------ELqm~kqR~edELneI~eEvsaLKrEIEs------------LrqKYEE 627 (1170)
++|.++..-+|.+|+.+.+ .+.+.-.|+.++|...+..+.++..||.+ |-.||--
T Consensus 142 EQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~ 221 (330)
T KOG2991|consen 142 EQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRT 221 (330)
T ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHH
Confidence 4444555555555555443 34455556666666666666655555543 2233332
Q ss_pred HHHHHHHHHHH-----HHHHHHHHH-------HHHHHHHHHHHHHHHHh-CC---C-CCccHHHHHHHHHHHHHHHHHHH
Q 001058 628 KYKQSGDVASK-----LTLEEATFR-------DIQEKKMELYQAILKME-GE---S-GDGTLQQHADHIQNELEELVKIL 690 (1170)
Q Consensus 628 ~~KQISELqsq-----IA~LEAeLQ-------DIQeQ~~eLqqALqkLE-~r---~-edA~LQeRIkqiQ~kLeELEKaL 690 (1170)
++.+-.||-.+ |+.||.+|. .++.+..+|.+=+++|. ++ + .-..||++|++-+.+|..|+|-+
T Consensus 222 L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 222 LQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333322 555555554 44445555555555443 11 1 22678999999999988888877
Q ss_pred HHHHHHhC
Q 001058 691 NDRCKQYG 698 (1170)
Q Consensus 691 ~Earqq~G 698 (1170)
.+..+--|
T Consensus 302 ~q~sqav~ 309 (330)
T KOG2991|consen 302 EQVSQAVG 309 (330)
T ss_pred HHHHHHhc
Confidence 76665433
No 141
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.11 E-value=0.016 Score=69.99 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001058 577 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 629 (1170)
Q Consensus 577 ~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~ 629 (1170)
..+.++|+.+-..|+.-...+..++..+..+...+...+.+.+.|..+++.+.
T Consensus 285 ~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 285 EEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333333322233333344444444444555555555555555554
No 142
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.11 E-value=0.03 Score=70.73 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=27.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
+.+++.+.-+.+|+.++.++.+|+..|...+.+|.++..++..|..++.+|+
T Consensus 805 ~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~ 856 (1174)
T KOG0933|consen 805 ESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLE 856 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334455555556666665555555555555555555555555444
No 143
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=97.10 E-value=0.041 Score=64.61 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 671 TLQQHADHIQNELEELVKILNDRCKQY 697 (1170)
Q Consensus 671 ~LQeRIkqiQ~kLeELEKaL~Earqq~ 697 (1170)
.++++|.+++.+|++++..+..+..++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776666555543
No 144
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.10 E-value=0.017 Score=69.68 Aligned_cols=68 Identities=10% Similarity=0.227 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 630 KQSGDVASKLTLEEA-------TFRDIQEKKMELYQAILKMEGESG-DGTLQQHADHIQNELEELVKILNDRCKQY 697 (1170)
Q Consensus 630 KQISELqsqIA~LEA-------eLQDIQeQ~~eLqqALqkLE~r~e-dA~LQeRIkqiQ~kLeELEKaL~Earqq~ 697 (1170)
.++.+|+.+|..++. .+.++...+.+++++|..+++..+ -..|++++++++.+|.++-+.|++.|++.
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555543 677777788888888888775443 37788888888888887777777777653
No 145
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=97.10 E-value=0.02 Score=61.99 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 642 EEATFRDIQEKKMELYQAILKMEGESGD-----GTLQQHADHIQNELEELVKILNDRCKQ 696 (1170)
Q Consensus 642 LEAeLQDIQeQ~~eLqqALqkLE~r~ed-----A~LQeRIkqiQ~kLeELEKaL~Earqq 696 (1170)
+++++.-++.++..++.++...-.+.+- ..|..++..++..|..|...+++.|..
T Consensus 155 l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~ 214 (240)
T PF12795_consen 155 LQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQ 214 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555421111111 345667777777777777777777764
No 146
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=97.10 E-value=0.023 Score=61.56 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=24.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 591 QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 640 (1170)
Q Consensus 591 QELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA 640 (1170)
+++.....++..++..+.+++.+++++++.++.++++...++....+.+.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555544444444444444
No 147
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.10 E-value=0.026 Score=64.44 Aligned_cols=87 Identities=22% Similarity=0.205 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Q 001058 602 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE-------------------ATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 602 dELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LE-------------------AeLQDIQeQ~~eLqqALqk 662 (1170)
..|.+.+++...|+.|++.|++++.|.+..|.-|..+|+..+ .+|..++.|+.+|+..|+.
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs 151 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQS 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778889999999999999888888888877642 3777788888888888887
Q ss_pred HhCCCCCccHHHHHHHHHHHHHHHHHHH
Q 001058 663 MEGESGDGTLQQHADHIQNELEELVKIL 690 (1170)
Q Consensus 663 LE~r~edA~LQeRIkqiQ~kLeELEKaL 690 (1170)
+.+.+ ..|..+-+-|+.+..-|-..|
T Consensus 152 ~lDEk--eEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 152 LLDEK--EELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 77777 444555555655555554444
No 148
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.09 E-value=0.029 Score=70.31 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKS-------RCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 639 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kq-------R~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqI 639 (1170)
.|+..+..++..-..++..++++|..+..... .+...|.....+...|..++++|+.++++...+|...+.+|
T Consensus 287 ~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 287 SKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665555566666666654443333 33344444444444566666666666666666666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 640 TLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 640 A~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
..++.++..++.++..|.+.|.. .+.+|..++.+|+.|+..|.+.-+
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~---------~e~ki~~Lq~kie~Lee~l~ekd~ 413 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDK---------KERKINVLQKKIENLEEQLREKDR 413 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444443 345677777777777666655444
No 149
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=97.09 E-value=0.01 Score=70.31 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 645 TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 645 eLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
-|+-.+....+|++++.++++++ +.+-+.+.+++.+|..|
T Consensus 262 ~Lq~~~da~~ql~aE~~EleDky--AE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 262 HLQAYKDAQRQLTAELEELEDKY--AECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 34444444455555555555555 54455555555555555
No 150
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.07 E-value=0.044 Score=65.96 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCccHHHH
Q 001058 601 DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES-----GDGTLQQH 675 (1170)
Q Consensus 601 edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~-----edA~LQeR 675 (1170)
..+|+.++.++..++..++.|+.+++..+..+..|..+.......+..+..++..+...|..+...- ....|...
T Consensus 294 k~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~ 373 (522)
T PF05701_consen 294 KKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKA 373 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 3345555556667777777788888888888888887776666666666666666666665443111 12334444
Q ss_pred HHHHHHHHHHH
Q 001058 676 ADHIQNELEEL 686 (1170)
Q Consensus 676 IkqiQ~kLeEL 686 (1170)
|+++..+.++.
T Consensus 374 Lqql~~Eae~A 384 (522)
T PF05701_consen 374 LQQLSSEAEEA 384 (522)
T ss_pred HHHHHHHHHHH
Confidence 55554444433
No 151
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.06 E-value=0.0012 Score=76.60 Aligned_cols=56 Identities=29% Similarity=0.372 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHH
Q 001058 392 VQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMER 458 (1170)
Q Consensus 392 kqeyreaF~~fDkDgDG~ISgdELr~~fLGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~ 458 (1170)
+..++.+|+.+|.|+||+|+.+|+.. +..+|+.+|.|+||.|+++||..+|..+.+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-----------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 56788999999999999999999832 578999999999999999999988877664
No 152
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=97.05 E-value=0.036 Score=60.45 Aligned_cols=54 Identities=7% Similarity=0.098 Sum_probs=22.5
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 609 ERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 609 eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
.|+..++...+.|+..++.+.+++.+|+++|..++...+.+.--+.++.+.|..
T Consensus 63 ~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 63 REIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444444444444444444444443
No 153
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.05 E-value=0.014 Score=73.42 Aligned_cols=131 Identities=16% Similarity=0.220 Sum_probs=67.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 001058 552 QESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQ 631 (1170)
Q Consensus 552 e~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQ 631 (1170)
++.+...++|.+|--..+.+++.+++.+..+++.++...++....+.|.... +.++.+++...|.+-..|.+..+.
T Consensus 183 e~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~y----rdeldalre~aer~d~~ykerlmD 258 (1195)
T KOG4643|consen 183 EKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRY----RDELDALREQAERPDTTYKERLMD 258 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHhhhcCCCccchhhhh
Confidence 3344444556666445666777777777777777777777666666655442 233334555555444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 632 SGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 632 ISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
+.=+..++..++..=+-+++.+.=|+++|+.++-+.+.+.|..+|-+++++|..|
T Consensus 259 s~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm 313 (1195)
T KOG4643|consen 259 SDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDM 313 (1195)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHH
Confidence 4333344444443333444444444444444444444444444444444444433
No 154
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.03 E-value=0.074 Score=56.64 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhCCCCCccHHHHH
Q 001058 606 EITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL---------KMEGESGDGTLQQHA 676 (1170)
Q Consensus 606 eI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq---------kLE~r~edA~LQeRI 676 (1170)
....++..++.+++.|+..|++...++..|...|..++..|++++.++..|..-.. +.............+
T Consensus 88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~ 167 (221)
T PF04012_consen 88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSF 167 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHH
Confidence 33444555566666666666666666666666666666666666665554443332 222222234455666
Q ss_pred HHHHHHHHHHH
Q 001058 677 DHIQNELEELV 687 (1170)
Q Consensus 677 kqiQ~kLeELE 687 (1170)
..++.++++++
T Consensus 168 er~e~ki~~~e 178 (221)
T PF04012_consen 168 ERMEEKIEEME 178 (221)
T ss_pred HHHHHHHHHHH
Confidence 66666666664
No 155
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=97.03 E-value=0.019 Score=64.08 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK------ 638 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsq------ 638 (1170)
+-.||.||+.++++|+.+-..-+-||.-|....+.-.....+-+.+.+.||||.+.|...|+.+.+...-|..-
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 34678899999988887766555555534333332233345566777899999999988887776555555444
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH
Q 001058 639 -LTLEEATFRDIQEKKMELYQA 659 (1170)
Q Consensus 639 -IA~LEAeLQDIQeQ~~eLqqA 659 (1170)
+.-+|++|...+.+++.|+++
T Consensus 96 qv~~lEgQl~s~Kkqie~Leqe 117 (307)
T PF10481_consen 96 QVNFLEGQLNSCKKQIEKLEQE 117 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544433
No 156
>PRK00106 hypothetical protein; Provisional
Probab=97.00 E-value=0.044 Score=66.35 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=15.2
Q ss_pred HHHHHHHHhCccc---CccccccccCCcc
Q 001058 689 ILNDRCKQYGLRA---KPTLLVELPFGWQ 714 (1170)
Q Consensus 689 aL~Earqq~GL~a---K~~~~vElp~gw~ 714 (1170)
.+..+.|+|.-.. +-.+.|.||-.=+
T Consensus 208 ii~~aiqr~a~~~~~e~tvs~v~lp~dem 236 (535)
T PRK00106 208 LLAQAMQRLAGEYVTEQTITTVHLPDDNM 236 (535)
T ss_pred HHHHHHHHhcchhhhhheeeeEEcCChHh
Confidence 3556666665333 4456688886433
No 157
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.00 E-value=0.027 Score=69.28 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhCcccCccc
Q 001058 685 ELVKILNDRCKQYGLRAKPTL 705 (1170)
Q Consensus 685 ELEKaL~Earqq~GL~aK~~~ 705 (1170)
++++++...|..+|+.+..+.
T Consensus 185 ~~~~~I~~l~~~Lg~~~~~~v 205 (660)
T KOG4302|consen 185 ELKEEIKSLCSVLGLDFSMTV 205 (660)
T ss_pred HHHHHHHHHHHHhCCCcccch
Confidence 445677788888888876444
No 158
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.97 E-value=0.039 Score=66.36 Aligned_cols=8 Identities=13% Similarity=0.451 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001058 673 QQHADHIQ 680 (1170)
Q Consensus 673 QeRIkqiQ 680 (1170)
+.++.+++
T Consensus 399 k~E~e~~k 406 (522)
T PF05701_consen 399 KEEAEQTK 406 (522)
T ss_pred HHHHHHHH
Confidence 33333333
No 159
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.97 E-value=0.0018 Score=76.69 Aligned_cols=68 Identities=25% Similarity=0.420 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCC-----CHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 001058 386 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRL-----PREVLKQVWDLSDQDNDGMLSLKEFCTALY 454 (1170)
Q Consensus 386 ~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fLGS~L-----peeeL~qIWdLaD~D~DGkLdfdEF~iAM~ 454 (1170)
.++.+|+..+++.|..+| |++|+|+..||..+|.+.++ ..+++++|+...+.|.+|+|+|+||+.++.
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 589999999999999999 99999999999999955443 379999999999999999999999996443
No 160
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.95 E-value=0.04 Score=59.07 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 001058 576 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY---KQSGDVASKLTLEEATFRDIQEK 652 (1170)
Q Consensus 576 I~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~---KQISELqsqIA~LEAeLQDIQeQ 652 (1170)
|..|+++|+..+++.+...........+-..+.+-+..++++++.|+.++++-. ..+..+..++..++.+|.+++-+
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444433333333333334444444455555555544433222 22333333444444455555544
Q ss_pred HHHHHHHHHHHh
Q 001058 653 KMELYQAILKME 664 (1170)
Q Consensus 653 ~~eLqqALqkLE 664 (1170)
++.|++.+.+++
T Consensus 109 ~evL~qr~~kle 120 (201)
T PF13851_consen 109 HEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 161
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.92 E-value=0.00077 Score=51.64 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 001058 428 VLKQVWDLSDQDNDGMLSLKEFCTALY 454 (1170)
Q Consensus 428 eL~qIWdLaD~D~DGkLdfdEF~iAM~ 454 (1170)
+|.+|++.+|.|+||+|+++||+.+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 355566666666666666666665543
No 162
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.91 E-value=0.063 Score=71.10 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 582 KIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY--------KQSGDVASKLTLEEATFRDIQEKK 653 (1170)
Q Consensus 582 EIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~--------KQISELqsqIA~LEAeLQDIQeQ~ 653 (1170)
+++.++.++.++.....++..++..+.+++..++++++.|+.++++++ +++.+|+.++..+...+.+..+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~ 356 (1353)
T TIGR02680 277 QYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAI 356 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555555555554443 444444444444444444444333
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q 001058 654 MELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRA 701 (1170)
Q Consensus 654 ~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~GL~a 701 (1170)
..-+..+.+++.+- ..++.+..+....|+++...+..+....|+..
T Consensus 357 ~~a~~~~e~~~~~~--~~~~~r~~~~~~~l~~~~~el~~~a~~~~~~~ 402 (1353)
T TIGR02680 357 REAESRLEEERRRL--DEEAGRLDDAERELRAAREQLARAAERAGLSP 402 (1353)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33333333333222 22344455555556666666666777777665
No 163
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.88 E-value=0.026 Score=73.02 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 641 LEEATFRDIQEKKMELYQAILKMEGESGD-----GTLQQHADHIQNELEELVKILNDRCKQ 696 (1170)
Q Consensus 641 ~LEAeLQDIQeQ~~eLqqALqkLE~r~ed-----A~LQeRIkqiQ~kLeELEKaL~Earqq 696 (1170)
.+++|++-++.|+..++.+++...++.+- ..++.|+++.+.+++.|..+++++|++
T Consensus 177 ~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~ 237 (1109)
T PRK10929 177 ALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQR 237 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666665555532222211 345667777778888888888887774
No 164
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.88 E-value=0.13 Score=59.76 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL 621 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsL 621 (1170)
++..+..+++++++++.++..+-.+.+.|+.+++.+.++-.++..-+..+|-+..+|
T Consensus 135 AqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L 191 (499)
T COG4372 135 AQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL 191 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666665555554444443333444444443
No 165
>PRK01156 chromosome segregation protein; Provisional
Probab=96.88 E-value=0.03 Score=70.51 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 001058 672 LQQHADHIQNELEEL 686 (1170)
Q Consensus 672 LQeRIkqiQ~kLeEL 686 (1170)
|+++++.++..+++|
T Consensus 714 l~eel~~~~~~~~~l 728 (895)
T PRK01156 714 LSDRINDINETLESM 728 (895)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 166
>PLN02939 transferase, transferring glycosyl groups
Probab=96.87 E-value=0.021 Score=72.70 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=50.5
Q ss_pred HHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH----HHhhh
Q 001058 542 HLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTS-----------------REKIQFCSTKMQELIL----YKSRC 600 (1170)
Q Consensus 542 ~lLnqls~EEe~~LnserqEAEEaqKKL~ELEaEI~~l-----------------reEIE~lrtQMQELqm----~kqR~ 600 (1170)
++|++++-..-+.+++-+.|.|++++||+-|++.+.+. .++++.+|..|-.... ....+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (977)
T PLN02939 145 LLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSL 224 (977)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccH
Confidence 45677776666677777788888888888888876442 2233333332211000 11123
Q ss_pred hhHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001058 601 DNRLNEITERVSGDKREVELLAKKYEEK 628 (1170)
Q Consensus 601 edELneI~eEvsaLKrEIEsLrqKYEE~ 628 (1170)
..||+.+++|-.-+|..++.|+.++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEV 252 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4456666666666777777666665544
No 167
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=96.86 E-value=0.17 Score=54.53 Aligned_cols=80 Identities=8% Similarity=0.064 Sum_probs=46.1
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCCCCccHHHHHHH
Q 001058 608 TERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM---------EGESGDGTLQQHADH 678 (1170)
Q Consensus 608 ~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkL---------E~r~edA~LQeRIkq 678 (1170)
..++......++.|+.+|+....+|.+|+.+|..||..|+.++.+...|..-+..+ .........-..+..
T Consensus 91 l~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer 170 (219)
T TIGR02977 91 LIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQ 170 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 33444555666666777777777777777777777777777777766444333221 111112333455666
Q ss_pred HHHHHHHHH
Q 001058 679 IQNELEELV 687 (1170)
Q Consensus 679 iQ~kLeELE 687 (1170)
+..+++++|
T Consensus 171 ~e~ki~~~e 179 (219)
T TIGR02977 171 YERRVDELE 179 (219)
T ss_pred HHHHHHHHH
Confidence 666666655
No 168
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.85 E-value=0.053 Score=54.86 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 585 FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 585 ~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
.+..++..+.....++...+..+..+++.+++++..++.+.-.+.+++..++..+..+..+++.++..++.+...+..
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~-- 133 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEH-- 133 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 333333334444444333333344444444444444444444444444444444444444444444444433333332
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHH
Q 001058 665 GESGDGTLQQHADHIQNELEELVKIL 690 (1170)
Q Consensus 665 ~r~edA~LQeRIkqiQ~kLeELEKaL 690 (1170)
+|+.-..+++.|.+.|
T Consensus 134 ----------e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 134 ----------ELRKKEREIEKLKERL 149 (151)
T ss_pred ----------HHHHHHHHHHHHHHHh
Confidence 3444455555555444
No 169
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.84 E-value=0.012 Score=64.38 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=36.9
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 001058 612 SGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILN 691 (1170)
Q Consensus 612 saLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~ 691 (1170)
...+.|++.|..++..-..+|.+++..|..+|..|++++.+.... ++.|..+..++..|....+
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~----------------~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKR----------------QEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH
Confidence 345555555555544333444444444444444444444444443 3344444455556666666
Q ss_pred HHHHH-hCcc
Q 001058 692 DRCKQ-YGLR 700 (1170)
Q Consensus 692 Earqq-~GL~ 700 (1170)
+.|+. .||.
T Consensus 99 ~~R~e~lgl~ 108 (230)
T PF10146_consen 99 ELRKEYLGLE 108 (230)
T ss_pred HHHHHHcCCC
Confidence 77775 6654
No 170
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.82 E-value=0.068 Score=67.77 Aligned_cols=41 Identities=29% Similarity=0.407 Sum_probs=23.0
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 544 MDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCST 588 (1170)
Q Consensus 544 Lnqls~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrt 588 (1170)
|.++++++ ..|+..+..-+ .+++.|+.+++.+..++|.++.
T Consensus 183 L~~lr~~e-~~Le~~~~~~~---~~l~~L~~~~~~l~kdVE~~re 223 (1072)
T KOG0979|consen 183 LMDLREDE-KSLEDKLTTKT---EKLNRLEDEIDKLEKDVERVRE 223 (1072)
T ss_pred HHHHHHHH-HHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543 34444444444 5666777777777777774443
No 171
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.81 E-value=0.16 Score=52.83 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=29.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
-.|..+..+..++..+..+|.+.+..++.++.+|..++.++..+...+.+|.
T Consensus 81 h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 81 HVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555566666666666666666666666655
No 172
>PF13514 AAA_27: AAA domain
Probab=96.80 E-value=0.076 Score=68.87 Aligned_cols=61 Identities=28% Similarity=0.435 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 626 EEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 626 EE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
+++..++.+|+..|..++.+++.+..++..++.+|..|++...-+.|.+++..+..+|.++
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~ 952 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEEL 952 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 3344677788888888888888999999999999998886664555666666666655544
No 173
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.80 E-value=0.031 Score=68.55 Aligned_cols=123 Identities=16% Similarity=0.219 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 571 ELEKEILTSREKIQFCSTKMQE----LILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 646 (1170)
Q Consensus 571 ELEaEI~~lreEIE~lrtQMQE----Lqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeL 646 (1170)
+|..|+..++++-+.+-.++|. ++..+.+.. +....++..+....+.|+.++.+....+++|..++...+..+
T Consensus 475 dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~Ar---EqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAELQLSARLIQQEVGRAR---EQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4555555566665555555541 222222222 233445556666777777777777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH----HHHHHHHHHHHHHHHHh
Q 001058 647 RDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ----NELEELVKILNDRCKQY 697 (1170)
Q Consensus 647 QDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ----~kLeELEKaL~Earqq~ 697 (1170)
+...++-..|..+|......|+ ..|+++..++. .+|.++|+-||++|..+
T Consensus 552 qes~eea~~lR~EL~~QQ~~y~-~alqekvsevEsrl~E~L~~~E~rLNeARREH 605 (739)
T PF07111_consen 552 QESTEEAAELRRELTQQQEVYE-RALQEKVSEVESRLREQLSEMEKRLNEARREH 605 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877665553 34888888777 45557799999988743
No 174
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.80 E-value=0.0093 Score=62.88 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q 001058 567 KKVEELEKEI 576 (1170)
Q Consensus 567 KKL~ELEaEI 576 (1170)
+...++..++
T Consensus 88 r~~~el~~~L 97 (194)
T PF08614_consen 88 RSKGELAQQL 97 (194)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3333333333
No 175
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=0.061 Score=68.10 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 577 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMEL 656 (1170)
Q Consensus 577 ~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eL 656 (1170)
.++..+|+.++.++++-...-.+.+++.+.+..++.++++|+..++++++++.++|+.|.+.|..+++.+..++.....+
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~ 869 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKA 869 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 44444444455555544444444455556666666667777777777777777777777777777777777777776666
Q ss_pred HHHHHH
Q 001058 657 YQAILK 662 (1170)
Q Consensus 657 qqALqk 662 (1170)
+++|.+
T Consensus 870 ~~el~~ 875 (1174)
T KOG0933|consen 870 QAELKD 875 (1174)
T ss_pred HHHHHH
Confidence 666664
No 176
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.79 E-value=0.13 Score=55.06 Aligned_cols=92 Identities=18% Similarity=0.267 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001058 570 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK-YKQSGDVASKLTLEEATFRD 648 (1170)
Q Consensus 570 ~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~-~KQISELqsqIA~LEAeLQD 648 (1170)
++|-.-|..+.++|..|+.+|.............|....+++...+.++..|++-.+.. ..+..+|+++|..++..+++
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~ 136 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQE 136 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Confidence 34444457777778888877776666666666677777777777777777665533321 13344445555555554444
Q ss_pred HHHHHHHHHHHHH
Q 001058 649 IQEKKMELYQAIL 661 (1170)
Q Consensus 649 IQeQ~~eLqqALq 661 (1170)
...++..|+..+.
T Consensus 137 ~~~ki~~Lek~le 149 (194)
T PF15619_consen 137 KEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 177
>PRK10869 recombination and repair protein; Provisional
Probab=96.78 E-value=0.049 Score=66.02 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001058 645 TFRDIQEKKMELYQAILKMEGESG-DGTLQQHADHIQNELEELVKILNDRCKQYG 698 (1170)
Q Consensus 645 eLQDIQeQ~~eLqqALqkLE~r~e-dA~LQeRIkqiQ~kLeELEKaL~Earqq~G 698 (1170)
.+.++-+..++++++|+.+++..+ -..|+++++.+..+|.++-+.|+++|++..
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA 372 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYA 372 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666677788887775543 366777777777777777777777777544
No 178
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.77 E-value=0.03 Score=58.10 Aligned_cols=94 Identities=23% Similarity=0.223 Sum_probs=51.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCccHHHHHHHHHHHHHHHH
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES-----GDGTLQQHADHIQNELEELV 687 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~-----edA~LQeRIkqiQ~kLeELE 687 (1170)
.++-|.+.|..++||...++..|..++...=..|.++++++..+...+..+...- .-..+.++|..+..+.+.|.
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544444444444444444443333322111 00334556666666667777
Q ss_pred HHHHHHHHHhCcccCcccc
Q 001058 688 KILNDRCKQYGLRAKPTLL 706 (1170)
Q Consensus 688 KaL~Earqq~GL~aK~~~~ 706 (1170)
+...+.+++.|+...|..+
T Consensus 126 ~~~~~l~~~~~~~~~P~ll 144 (177)
T PF13870_consen 126 KQNKKLRQQGGLLGVPALL 144 (177)
T ss_pred HHHHHHHHhcCCCCCcHHH
Confidence 8888888888887766654
No 179
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.76 E-value=0.08 Score=64.84 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=6.5
Q ss_pred CCCCCCCcCHHHHH
Q 001058 437 DQDNDGMLSLKEFC 450 (1170)
Q Consensus 437 D~D~DGkLdfdEF~ 450 (1170)
..+.||.-+-+-|-
T Consensus 245 n~~~d~~~Ss~~FE 258 (961)
T KOG4673|consen 245 NENLDGRTSSKNFE 258 (961)
T ss_pred ccccccccccchhh
Confidence 34444444444443
No 180
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.76 E-value=0.048 Score=54.59 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 672 LQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 672 LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
..++-..+..+|+++++.+.+...
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 181
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.74 E-value=0.073 Score=57.52 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATF 646 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeL 646 (1170)
.+|.|.++++..--.+|-.|+.++.++.......+.++..+...+..-..|++..+.++.....++.-|..+|..+|.+|
T Consensus 17 qQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El 96 (202)
T PF06818_consen 17 QQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAEL 96 (202)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHH
Confidence 33444444443333344444444444444333333333444333334444445445555555555555666666666666
Q ss_pred HHHHHHHHHH
Q 001058 647 RDIQEKKMEL 656 (1170)
Q Consensus 647 QDIQeQ~~eL 656 (1170)
+.++..+..+
T Consensus 97 ~~Lr~~l~~~ 106 (202)
T PF06818_consen 97 AELREELACA 106 (202)
T ss_pred HHHHHHHHhh
Confidence 6666666654
No 182
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.74 E-value=0.056 Score=61.78 Aligned_cols=134 Identities=16% Similarity=0.090 Sum_probs=76.3
Q ss_pred hhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHH
Q 001058 545 DQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKK 624 (1170)
Q Consensus 545 nqls~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqK 624 (1170)
.++-.+.++....-..|.+++.+++.|++-++.-+|+++..++.....+... ... .+...+=.++|.++.+
T Consensus 71 a~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~-----~~~----~ere~lV~qLEk~~~q 141 (319)
T PF09789_consen 71 AQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGAR-----HFP----HEREDLVEQLEKLREQ 141 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccc-----ccc----hHHHHHHHHHHHHHHH
Confidence 3333444444433333555555666666666555555555444333221110 101 2223344445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------CCccHHHHHHHHHHHHHHHH
Q 001058 625 YEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES------------GDGTLQQHADHIQNELEELV 687 (1170)
Q Consensus 625 YEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~------------edA~LQeRIkqiQ~kLeELE 687 (1170)
+++++..+..+-.-++++..+..--+.+...|+.+|.-+.++. ||-.|++||.+++.+.+-+.
T Consensus 142 ~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k 216 (319)
T PF09789_consen 142 IEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLK 216 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555556666677777888888999988877554 33678888888888777664
No 183
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.73 E-value=0.0087 Score=64.93 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH---cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHhc
Q 001058 392 VQKYTKVFVQVDIDRDGKITGEQAYNLFL---SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERYRE 461 (1170)
Q Consensus 392 kqeyreaF~~fDkDgDG~ISgdELr~~fL---GS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~lk 461 (1170)
...+...|..+|+|+.|+|+.+||...|. ......+.++-|+.++|.+++|+|++.||....+.|...++
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999994 35788999999999999999999999999988888887764
No 184
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.038 Score=69.59 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 001058 589 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY-------KQSGDVASKLTL-------EEATFRDIQEKKM 654 (1170)
Q Consensus 589 QMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~-------KQISELqsqIA~-------LEAeLQDIQeQ~~ 654 (1170)
+++.......+..-+|.++...+..++.|.|.|+.++.+.. -++++|+.+|+. +...|+.++.++.
T Consensus 259 ~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~ 338 (1200)
T KOG0964|consen 259 ALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIE 338 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 33333334444444445555555555555555544433332 345666666554 3568888899999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q 001058 655 ELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRA 701 (1170)
Q Consensus 655 eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~GL~a 701 (1170)
+-+++|.+++-.+ ..|..+-++++..|..|++.+++...+.|=..
T Consensus 339 e~~~EL~~I~Pky--~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~s 383 (1200)
T KOG0964|consen 339 EKKDELSKIEPKY--NSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYS 383 (1200)
T ss_pred HHHHHHHHhhhHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999888 78888889999999999888888877766443
No 185
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.72 E-value=0.13 Score=57.21 Aligned_cols=52 Identities=25% Similarity=0.192 Sum_probs=29.8
Q ss_pred hcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 613 GDKREVELLAKKYE----EKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 613 aLKrEIEsLrqKYE----E~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
+++-|++.++.+.| +-++|++.|+..++-+.+.-.++++.+.+|+++-.+||
T Consensus 70 rl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 70 RLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 34444444433333 33466666666666666666666666666666666555
No 186
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.71 E-value=0.092 Score=65.45 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHH-------HHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEI-------LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKR-------EVELLAKKYEEKYK 630 (1170)
Q Consensus 565 aqKKL~ELEaEI-------~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKr-------EIEsLrqKYEE~~K 630 (1170)
|..+|.+|+.++ .+-+.+.+.+....++|.......+.+...++++|+..|- +.-+|+.+--.++|
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445555555554 4444444444444444444444333333333344433333 33334444444456
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH-HHHHHHH-HHHHHHHHHHhCcc
Q 001058 631 QSGDVASKLTL---EEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHI-QNELEEL-VKILNDRCKQYGLR 700 (1170)
Q Consensus 631 QISELqsqIA~---LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqi-Q~kLeEL-EKaL~Earqq~GL~ 700 (1170)
||+.|...--+ +..+|+.+.+.+..|+..+.++. ||++| .++|+|- +-+..||=|++-|+
T Consensus 112 qvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~----------rLk~iae~qleEALesl~~EReqk~~Lr 176 (717)
T PF09730_consen 112 QVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA----------RLKEIAEKQLEEALESLKSEREQKNALR 176 (717)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666544222 23456666666666665555532 34443 3666643 33334444455444
No 187
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.70 E-value=0.13 Score=52.83 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELI 594 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELq 594 (1170)
.++.+.+.+-+.+.+.|..+.+.++.++
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q 37 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQ 37 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544433
No 188
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.042 Score=66.71 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 671 TLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 671 ~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
.|+.+|..-...+++|++.|.+.+|
T Consensus 485 ~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 485 RLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555554
No 189
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.69 E-value=0.08 Score=64.82 Aligned_cols=135 Identities=15% Similarity=0.054 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQ----ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 640 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQ----ELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA 640 (1170)
|.+.|.+|+.+++.+-.+.+.+|++|. +|.....+ |+|.+..+.|+.+-.|=|.|-++.-.....|+.|..++.
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~--DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~k 484 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK--DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIK 484 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 667777777777777777777777665 33333333 556666666666666666554333333333344433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------------------------CCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 641 LEEATFRDIQEKKMELYQAILKME--------------------------GESGDGTLQQHADHIQNELEELVKILNDRC 694 (1170)
Q Consensus 641 ~LEAeLQDIQeQ~~eLqqALqkLE--------------------------~r~edA~LQeRIkqiQ~kLeELEKaL~Ear 694 (1170)
..|--+...-+++..|+.++.+|+ ....+++++.+|..++.++--++.++.+++
T Consensus 485 e~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~ 564 (961)
T KOG4673|consen 485 EAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEAR 564 (961)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 222111111112222222221111 222336666666666666666677777777
Q ss_pred HHhCccc
Q 001058 695 KQYGLRA 701 (1170)
Q Consensus 695 qq~GL~a 701 (1170)
+-+.+.+
T Consensus 565 ~Dlqk~n 571 (961)
T KOG4673|consen 565 SDLQKEN 571 (961)
T ss_pred hhHHHHh
Confidence 6554433
No 190
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.65 E-value=0.17 Score=62.22 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-c---cHHHHHHHHHHHHHHHHHHHHHHHH-HhC
Q 001058 627 EKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD-G---TLQQHADHIQNELEELVKILNDRCK-QYG 698 (1170)
Q Consensus 627 E~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ed-A---~LQeRIkqiQ~kLeELEKaL~Earq-q~G 698 (1170)
++..+|++|.+++..++.+++.-.+.+.+|+.+|..+-..-.- + ..-+=++.|+++=+|+.|.|.+.|. |+-
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQke 520 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKE 520 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4447777888888888888888888889999988876532111 1 1222234455666677777777666 443
No 191
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=96.62 E-value=0.14 Score=57.24 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 561 EATEADKKVEELEKEILTSREKIQFCST 588 (1170)
Q Consensus 561 EAEEaqKKL~ELEaEI~~lreEIE~lrt 588 (1170)
+...+++++.+|.++|.+.++++.+|.+
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778889999999999999998887
No 192
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.62 E-value=0.054 Score=66.41 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 617 EVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAI 660 (1170)
Q Consensus 617 EIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqAL 660 (1170)
+++.|+.++++..+++.+++..+..++.++..+++++..++..|
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344443333333333333333333333333
No 193
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.62 E-value=0.002 Score=49.33 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH
Q 001058 394 KYTKVFVQVDIDRDGKITGEQAYNLFL 420 (1170)
Q Consensus 394 eyreaF~~fDkDgDG~ISgdELr~~fL 420 (1170)
+++++|+.+|+|+||+|+.+|++.+|.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 478999999999999999999999884
No 194
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.61 E-value=0.19 Score=59.69 Aligned_cols=63 Identities=22% Similarity=0.162 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 631 QSGDVASKLTLEEATFRDIQEKKMELYQAI----LKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 631 QISELqsqIA~LEAeLQDIQeQ~~eLqqAL----qkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
|+-++.+.|..-|.++..+|.-+.+|+.+. .-|...+ ...+++.--+|.++..-||..-+-||
T Consensus 447 qclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEK--e~~EqefLslqeEfQk~ekenl~ERq 513 (527)
T PF15066_consen 447 QCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREK--ETREQEFLSLQEEFQKHEKENLEERQ 513 (527)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333444444444555555555555555444 2333444 33344555555555544444333333
No 195
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.61 E-value=0.15 Score=56.66 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=49.8
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 001058 609 ERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA-------TFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQN 681 (1170)
Q Consensus 609 eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEA-------eLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~ 681 (1170)
.+++.|++++-.++..+|++++-|.+|+..--+||- .|.|.- +.|.+||.. +|-|+-+|..-+.
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfe---qrLnqAIEr------nAfLESELdEke~ 161 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFE---QRLNQAIER------NAFLESELDEKEV 161 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHH---HHHHHHHHH------HHHHHHHhhHHHH
Confidence 344567777777777777777777777765444431 222222 234455544 2566667777777
Q ss_pred HHHHHHHH---HHHHHHHhCcccCcc
Q 001058 682 ELEELVKI---LNDRCKQYGLRAKPT 704 (1170)
Q Consensus 682 kLeELEKa---L~Earqq~GL~aK~~ 704 (1170)
.|+....+ -.+.||.+.|.-|++
T Consensus 162 llesvqRLkdEardlrqelavr~kq~ 187 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELAVRTKQT 187 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77754333 344555666766665
No 196
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.59 E-value=0.26 Score=53.49 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001058 670 GTLQQHADHIQNELEELVKILNDRCKQYG 698 (1170)
Q Consensus 670 A~LQeRIkqiQ~kLeELEKaL~Earqq~G 698 (1170)
.+|++.|++-..+.+||.+.+-+.+-++|
T Consensus 178 ~SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 178 QSLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555555555555554443
No 197
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=96.58 E-value=0.16 Score=59.09 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=43.4
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 608 TERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 608 ~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
.+++..++||+|-|-.+|-++.-++..|.+++...+..|++.|.+-++|++--++
T Consensus 420 leelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQE 474 (593)
T KOG4807|consen 420 LEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQE 474 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4566788899999999999888888888888888888888888776666554433
No 198
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.56 E-value=0.16 Score=65.19 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 642 EEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 642 LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
.|..+..+|++++.+.+-|++-+.+..++ ++|+++++.+-++|
T Consensus 1659 a~q~~~~lq~~~~~~~~l~~~r~~g~~~a--r~rAe~L~~eA~~L 1701 (1758)
T KOG0994|consen 1659 AEQGLEILQKYYELVDRLLEKRMEGSQAA--RERAEQLRTEAEKL 1701 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhH--HHHHHHHHHHHHHH
Confidence 34566666666666665555544555344 56666665554444
No 199
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.56 E-value=0.11 Score=61.52 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 001058 558 KLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQS 632 (1170)
Q Consensus 558 erqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQI 632 (1170)
+.+||+++..++..|+.+.-.++.+..-|..-|..+..+.+.--..|..+..+|..-+.||+.|+.+.+++++||
T Consensus 286 ~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 286 KIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 355555555666666555555555544444433333333333333344444444444444444444444444443
No 200
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.52 E-value=0.1 Score=61.02 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=8.7
Q ss_pred HhcHHHHHHHHHHHHHHH
Q 001058 612 SGDKREVELLAKKYEEKY 629 (1170)
Q Consensus 612 saLKrEIEsLrqKYEE~~ 629 (1170)
.+||+|.=.|+..+|+++
T Consensus 182 eQLRre~V~lentlEQEq 199 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQ 199 (552)
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 355555555544444433
No 201
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=96.51 E-value=0.26 Score=53.89 Aligned_cols=57 Identities=9% Similarity=0.279 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL 621 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsL 621 (1170)
.+++++++..|...+.++++.++.++..|..++.+.+..+.+..+++.+++++++.+
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777777777777666665554444444444444444443
No 202
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=96.49 E-value=0.16 Score=52.69 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=47.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH-HHHHHHHHH
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ-NELEELVKI 689 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ-~kLeELEKa 689 (1170)
=.++|++.+|++++.+.++|.-|....+-.|.++.++++.+.+.+++-..|-++- -.|=.+-..++ ++|+||.|.
T Consensus 81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L--~eLv~eSE~~rmKKLEELsk~ 156 (159)
T PF04949_consen 81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRL--MELVSESERLRMKKLEELSKE 156 (159)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 4577788888888888888888888877778888888777777666555433322 11222222233 566666554
No 203
>PRK10698 phage shock protein PspA; Provisional
Probab=96.46 E-value=0.4 Score=52.23 Aligned_cols=48 Identities=6% Similarity=0.005 Sum_probs=25.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAI 660 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqAL 660 (1170)
.....++.|+.+|+....++.+|+.+|..|+..|++++.+...|-.-+
T Consensus 96 ~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 96 KLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555444333
No 204
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.43 E-value=0.073 Score=64.31 Aligned_cols=99 Identities=22% Similarity=0.246 Sum_probs=51.9
Q ss_pred hhhHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHhhhhhHHHHH
Q 001058 538 ELEKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEIL---TSREKIQFCSTKMQ-------ELILYKSRCDNRLNEI 607 (1170)
Q Consensus 538 ~LDd~lLnqls~EEe~~LnserqEAEEaqKKL~ELEaEI~---~lreEIE~lrtQMQ-------ELqm~kqR~edELneI 607 (1170)
++++.+...+........+ +++.++++..+|..+|. ....+++.++.+.. ..+.+.......-...
T Consensus 217 ~~~~Elk~~l~~~~~~i~~----~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~ 292 (581)
T KOG0995|consen 217 ELEDELKHRLEKYFTSIAN----EIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHM 292 (581)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH
Confidence 5677776666665443332 44444455555555443 11223334444333 3333444444434444
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 608 TERVSGDKREVELLAKKYEEKYKQSGDVASKLT 640 (1170)
Q Consensus 608 ~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA 640 (1170)
...|+.++.|+++-+.++|.+++++.+|..+|.
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677777777777777777777776643
No 205
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.43 E-value=0.12 Score=61.09 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=13.9
Q ss_pred Ccc---CCCCCCCCcccccCC
Q 001058 886 SWG---TFDTHYDAESVWGFD 903 (1170)
Q Consensus 886 ~wg---~fd~~~d~dsvw~~~ 903 (1170)
.|| --||+.-.-||.|+|
T Consensus 350 GYG~vvIldhG~gy~slyg~~ 370 (420)
T COG4942 350 GYGLVVILDHGGGYHSLYGGN 370 (420)
T ss_pred cCceEEEEEcCCccEEEeccc
Confidence 366 568888888888888
No 206
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=96.43 E-value=0.1 Score=60.45 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=49.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 001058 551 EQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYK 630 (1170)
Q Consensus 551 Ee~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~K 630 (1170)
.+..+.+.++=...+.+.+.+++.++.++.+++...--+++-.+.+.+ +.|..+..+.+..++++..++.+|.+...
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~s~ 294 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQASE 294 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344333333334455555555555555555544444444444433 22444555555555555555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 631 QSGDVASKLTLEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 631 QISELqsqIA~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
-|.++. .+|.+|.++++++.+++++
T Consensus 295 ~V~~~t-------~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 295 GVSERT-------RELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 444444 4445555555555555554
No 207
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.42 E-value=0.48 Score=51.11 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=6.7
Q ss_pred HHHHHHHHHhHHHHHH
Q 001058 549 KEEQESLNAKLKEATE 564 (1170)
Q Consensus 549 ~EEe~~LnserqEAEE 564 (1170)
.++-..+.+...-+++
T Consensus 21 ~~en~kL~~~ve~~ee 36 (193)
T PF14662_consen 21 ADENAKLQRSVETAEE 36 (193)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444443334444
No 208
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.42 E-value=0.0031 Score=48.04 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH
Q 001058 394 KYTKVFVQVDIDRDGKITGEQAYNLFL 420 (1170)
Q Consensus 394 eyreaF~~fDkDgDG~ISgdELr~~fL 420 (1170)
+|+++|+.+|+|++|+|+.+|++.+|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578888888888889998888888874
No 209
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.41 E-value=0.11 Score=69.69 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHhcHHHHHHHHHHHH
Q 001058 574 KEILTSREKIQFCSTKMQELILY-KSRCDNRLNEITERVSGDKREVELLAKKYE 626 (1170)
Q Consensus 574 aEI~~lreEIE~lrtQMQELqm~-kqR~edELneI~eEvsaLKrEIEsLrqKYE 626 (1170)
+++..++.+.+.++.+.|+|... +..--++++.+..+|.+|+.+++..+..++
T Consensus 1278 ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~ 1331 (1822)
T KOG4674|consen 1278 AELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIA 1331 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554433 333333444444444455554444333333
No 210
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.39 E-value=0.097 Score=64.91 Aligned_cols=95 Identities=12% Similarity=0.068 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHH----HHHHHHHHHH---HHH
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE----EKYKQSGDVA---SKL 639 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYE----E~~KQISELq---sqI 639 (1170)
-.+.+++.||-.|+.+...+..++|.|+..++++++.|.+...|+..++.+++.|+.++- +.++--.+|. ..|
T Consensus 99 ddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~l 178 (1265)
T KOG0976|consen 99 DDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEEL 178 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence 334444444544444444444555555555555555555555554444444443332221 1221112222 224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001058 640 TLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 640 A~LEAeLQDIQeQ~~eLqqALq 661 (1170)
.+++.+++..-+...+++.++.
T Consensus 179 t~~~~q~~tkl~e~~~en~~le 200 (1265)
T KOG0976|consen 179 NEFNMEFQTKLAEANREKKALE 200 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444
No 211
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.012 Score=68.62 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH--cCC-CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHH
Q 001058 387 MTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWR-LPREVLKQVWDLSDQDNDGMLSLKEFCTALYLMERY 459 (1170)
Q Consensus 387 LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fL--GS~-LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe~~ 459 (1170)
+.++-..+++.+|+.||.+++|.|+..+|...|. +.. ...+-...|+..+|.|.||.++|.||..-|.--+..
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~ 83 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELE 83 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHH
Confidence 4566677999999999999999999999998883 333 557778889999999999999999998755444443
No 212
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.37 E-value=0.11 Score=59.22 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCccc--HHHHHHHH
Q 001058 386 KMTHSEVQKYTKVFVQVDIDRDGKIT--GEQAYNLF 419 (1170)
Q Consensus 386 ~LSpEEkqeyreaF~~fDkDgDG~IS--gdELr~~f 419 (1170)
.+++++++..-+.|- +-.|.-|-++ .+++..+.
T Consensus 34 ~ls~~~~~~~l~y~~-Lc~~rv~qmtkty~Didavt 68 (306)
T PF04849_consen 34 ELSPEQIEETLRYFL-LCSDRVSQMTKTYNDIDAVT 68 (306)
T ss_pred CCCHHHHHHHHHHHH-hcccchhhhhcchhhHHHHH
Confidence 578888888877773 3345555443 34554444
No 213
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=96.36 E-value=0.22 Score=57.10 Aligned_cols=54 Identities=9% Similarity=0.068 Sum_probs=39.9
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 611 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 611 vsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
+..++.|-+.|+-++++...++.|-++.-+.|.-+|.+...-++.|.++|++.-
T Consensus 136 i~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf 189 (401)
T PF06785_consen 136 IRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATF 189 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345566666666666666677777666667777788888888999999999865
No 214
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.36 E-value=0.11 Score=63.72 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 001058 685 ELVKILNDRCK 695 (1170)
Q Consensus 685 ELEKaL~Earq 695 (1170)
.|++..++.-+
T Consensus 506 ~le~~~~~~f~ 516 (650)
T TIGR03185 506 QLEEEITKSFK 516 (650)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 215
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.35 E-value=0.097 Score=52.48 Aligned_cols=92 Identities=13% Similarity=0.307 Sum_probs=44.9
Q ss_pred HHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccH
Q 001058 596 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDV---ASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTL 672 (1170)
Q Consensus 596 ~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISEL---qsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~L 672 (1170)
...+++.|+..+..+++++.++-+.|+.++-.+..++.++ ...+..++.++++++.++.. +..|.|.+
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t----~LellGEK----- 94 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQT----LLELLGEK----- 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcch-----
Confidence 3333344444444444444444444444443333322222 22233344444444444432 22344666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 673 QQHADHIQNELEELVKILNDRCKQ 696 (1170)
Q Consensus 673 QeRIkqiQ~kLeELEKaL~Earqq 696 (1170)
-+++..++.+|.+|++...+..++
T Consensus 95 ~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888888888888777666554
No 216
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.12 Score=64.90 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 559 LKEATEADKKVEELEKEILTSREKIQFCSTK 589 (1170)
Q Consensus 559 rqEAEEaqKKL~ELEaEI~~lreEIE~lrtQ 589 (1170)
.|+..+..+++.||+.+++.++++.+.|..+
T Consensus 619 mkd~~~~~q~~~EL~~q~~~L~ee~~af~~~ 649 (984)
T COG4717 619 MKDLKKLMQKKAELTHQVARLREEQAAFEER 649 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455557788999999999999988866553
No 217
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.34 E-value=0.33 Score=55.18 Aligned_cols=116 Identities=11% Similarity=0.134 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 576 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKME 655 (1170)
Q Consensus 576 I~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~e 655 (1170)
+.++++.-+.|..|+.+.+...+.++++|..+...+..----+|.++..+.+.+-|+++++.+++..++.+..--.+...
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes 218 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES 218 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45566666677777777777777777777777666655555667777778888888888888888887777777777777
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 001058 656 LYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDR 693 (1170)
Q Consensus 656 LqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Ea 693 (1170)
|+.-|..++..+ ..|++.|.+++++-+--||....+
T Consensus 219 ~eERL~QlqsEN--~LLrQQLddA~~K~~~kek~Vini 254 (305)
T PF14915_consen 219 LEERLSQLQSEN--MLLRQQLDDAHNKADNKEKTVINI 254 (305)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 777777766555 777777777777666555544433
No 218
>PF13514 AAA_27: AAA domain
Probab=96.33 E-value=0.15 Score=66.36 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001058 670 GTLQQHADHIQNELEELVKILNDRCKQYG 698 (1170)
Q Consensus 670 A~LQeRIkqiQ~kLeELEKaL~Earqq~G 698 (1170)
...+..+...+.+|.+++..+.++++++|
T Consensus 299 ~~~~~dl~~~~~e~~~~~~~~~~~~~~lg 327 (1111)
T PF13514_consen 299 RKARQDLPRLEAELAELEAELRALLAQLG 327 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455566666777777777788888888
No 219
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.075 Score=64.62 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=13.2
Q ss_pred HHHHHHHHHhCcccCccccccccCC
Q 001058 688 KILNDRCKQYGLRAKPTLLVELPFG 712 (1170)
Q Consensus 688 KaL~Earqq~GL~aK~~~~vElp~g 712 (1170)
.++..++..||+..=-..+||=|-|
T Consensus 531 ~~Ie~~e~~~gik~GDvi~v~~~sG 555 (652)
T COG2433 531 EAIEEAEEEYGIKEGDVILVEDPSG 555 (652)
T ss_pred HHHHhHHHhhccccCcEEEEEcCCC
Confidence 3445555566665544455555544
No 220
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=0.13 Score=65.65 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=70.7
Q ss_pred hhHHHHhhhcHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001058 539 LEKHLMDQLSKEEQESLNAKLK-------EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERV 611 (1170)
Q Consensus 539 LDd~lLnqls~EEe~~Lnserq-------EAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEv 611 (1170)
.|++-+.++..- +++|..+++ ++.+++.++.-|+..+..++-+++..+..+.++....++.+++++++.-++
T Consensus 649 wdek~~~~L~~~-k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i 727 (1141)
T KOG0018|consen 649 WDEKEVDQLKEK-KERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEI 727 (1141)
T ss_pred cCHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchH
Confidence 455554444432 333433333 444466677777777777777777777777777778888888888888888
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 612 SGDKREVELLAKKYEEKYKQSGDVASKL 639 (1170)
Q Consensus 612 saLKrEIEsLrqKYEE~~KQISELqsqI 639 (1170)
..++++++..+..+.+++.++.+++.+|
T Consensus 728 ~~i~r~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 728 SEIKRKLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999998888888888888888763
No 221
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.0085 Score=69.81 Aligned_cols=66 Identities=23% Similarity=0.475 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 001058 390 SEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 455 (1170)
Q Consensus 390 EEkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~L 455 (1170)
+.+.++.++|..+|.++||.|...|+...| ++.+|..+++++|++-+|.++++.|+++||-..|.|
T Consensus 79 ~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 79 NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 335688899999999999999999999999 788999999999999999999999999999765443
No 222
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.28 E-value=0.18 Score=59.25 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Q 001058 638 KLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPTLL 706 (1170)
Q Consensus 638 qIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~GL~aK~~~~ 706 (1170)
-.+++..+|..++.|+.+.++.+..+.++- -..+++-+.++..+++|.|.|.-+|.+++..+.+...
T Consensus 333 e~qr~sd~LE~lrlql~~eq~l~~rm~d~L--rrfq~ekeatqELieelrkelehlr~~kl~~a~p~rg 399 (502)
T KOG0982|consen 333 EDQRSSDLLEALRLQLICEQKLRVRMNDIL--RRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRG 399 (502)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 333344444555555554444444433222 2245555667788889999999999999988876654
No 223
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.28 E-value=0.14 Score=60.21 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001058 675 HADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 675 RIkqiQ~kLeELEKaL~Earq 695 (1170)
++.+++.+|++|+..+.+++.
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~ 257 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQV 257 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444444
No 224
>PRK11281 hypothetical protein; Provisional
Probab=96.27 E-value=0.16 Score=66.12 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=20.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 552 QESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELI 594 (1170)
Q Consensus 552 e~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELq 594 (1170)
+..++...++..++++++..++++..+-+..+..-+.++||+.
T Consensus 134 ~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~ 176 (1113)
T PRK11281 134 LDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 3333333333444555555555555554555444444555444
No 225
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.12 Score=51.37 Aligned_cols=96 Identities=20% Similarity=0.172 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH------------hcHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS------------GDKREVELLAKKYEEKYKQS 632 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvs------------aLKrEIEsLrqKYEE~~KQI 632 (1170)
+++|+.++-..+++++.+++.|-...|.|.++.++...-|+++. .+. =.|.++++.++-.+ +-|
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eld-lle~d~~VYKliGpvLvkqel~EAr~nV~---kRl 78 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELD-LLEEDSNVYKLIGPVLVKQELEEARTNVG---KRL 78 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HhcccchHHHHhcchhhHHHHHHHHhhHH---HHH
Confidence 45777777788888888888777777777777665544333331 111 23344443333222 555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 633 GDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 633 SELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
.=+...|.++|.+|+|+++++..+..++.++.
T Consensus 79 efI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q 110 (120)
T KOG3478|consen 79 EFISKEIKRLENQIRDSQEEFEKQREAVIKLQ 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777777777777777777655
No 226
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.27 E-value=0.34 Score=58.97 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 001058 577 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK----LTLEEATFRDIQEK 652 (1170)
Q Consensus 577 ~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsq----IA~LEAeLQDIQeQ 652 (1170)
.+-++.+...+.+|.++.....+..++|+++.+.=.+.+.+++.|+.+|.++.+++-+.+.+ +..+|..|.++..+
T Consensus 97 ~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~ 176 (560)
T PF06160_consen 97 KKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEE 176 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHH
Confidence 45556666777777778888888888888888777788999999999999998888776655 34444455444444
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 653 KMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 653 ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
..+ ..++...+....=++-+..++..+.+|+..+.+.=+
T Consensus 177 F~~----f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~ 215 (560)
T PF06160_consen 177 FSE----FEELTENGDYLEAREILEKLKEETDELEEIMEDIPK 215 (560)
T ss_pred HHH----HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 443 333443332232345555666666666554444433
No 227
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.27 E-value=0.28 Score=61.93 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 617 EVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 617 EIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE-~r~edA~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
||+.|+-.|+-....|..|+.+|..|+..|++--.++..+..-|.. . +......+..+|..+..+++.+.+.|.+.+.
T Consensus 379 Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~ 457 (775)
T PF10174_consen 379 EIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRE 457 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444444333332 2 1111123345555555555555555555543
No 228
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=96.27 E-value=0.097 Score=52.38 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN 602 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~ed 602 (1170)
..+.++..++..++++++.+..++.+|.....++..
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777666666555433
No 229
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.26 E-value=0.12 Score=65.55 Aligned_cols=58 Identities=29% Similarity=0.338 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLA 622 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLr 622 (1170)
+..+..+|+.++.+...++...+..|-+.........+.|+++..++.+++.++|.|+
T Consensus 274 i~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk 331 (1072)
T KOG0979|consen 274 IEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLK 331 (1072)
T ss_pred hhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555554444444444444444444444444444444444444443
No 230
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=96.26 E-value=0.24 Score=54.33 Aligned_cols=116 Identities=13% Similarity=0.162 Sum_probs=57.2
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHH
Q 001058 544 MDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAK 623 (1170)
Q Consensus 544 Lnqls~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrq 623 (1170)
|.+...+-+..+.+-++.+..+-.....++.++.+++.+++-|..+.+... .+.. ++--.+..++++.+...++.+++
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al-~~g~-E~LAr~al~~~~~le~~~~~~~~ 106 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL-QAGN-EDLAREALEEKQSLEDLAKALEA 106 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334455666666666665555443211 1111 12234455555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 624 KYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 624 KYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
.|.+...++..|..+|..||..|.+++.++..|.+...
T Consensus 107 ~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 107 ELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655566666666666555555555555544443
No 231
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=96.25 E-value=0.083 Score=62.61 Aligned_cols=126 Identities=10% Similarity=0.095 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH-------HHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY-------KQSGDVAS 637 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~-------KQISELqs 637 (1170)
+++.|++.+.++.+-++.+..||.+-+.|-=..+ ...+..-|.+|+.++-.++.++..+. -+|..|+.
T Consensus 247 Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~-----a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~ 321 (434)
T PRK15178 247 LENDVKSAQENLGAARLELLKIQHIQKDIDPKET-----ITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSA 321 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Confidence 4444555555555555555555544332221111 22233334455555555555555443 45666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhCCCCCccHHHHHH--HHHHHHHHHHHHHHHHHH
Q 001058 638 KLTLEEATFRDIQEKKMELY--QAILKMEGESGDGTLQQHAD--HIQNELEELVKILNDRCK 695 (1170)
Q Consensus 638 qIA~LEAeLQDIQeQ~~eLq--qALqkLE~r~edA~LQeRIk--qiQ~kLeELEKaL~Earq 695 (1170)
+|+.||.+|+..+.++..-. ..+..+...++...|+.++. .|..-|.-||+++.|+.+
T Consensus 322 rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR~EA~R 383 (434)
T PRK15178 322 KIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGKLQALR 383 (434)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666663100 01111222232233333332 344556688999999877
No 232
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.25 E-value=0.13 Score=60.91 Aligned_cols=7 Identities=57% Similarity=0.415 Sum_probs=2.9
Q ss_pred cCCCCcc
Q 001058 277 FSSDSLF 283 (1170)
Q Consensus 277 ~~s~s~f 283 (1170)
++.+++|
T Consensus 24 r~~d~g~ 30 (493)
T KOG0804|consen 24 RSEDSGF 30 (493)
T ss_pred ccccccc
Confidence 4444433
No 233
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=96.25 E-value=0.073 Score=54.91 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 001058 602 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL--TLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHI 679 (1170)
Q Consensus 602 dELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqI--A~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqi 679 (1170)
.+|..+..++..++.++..|+.++..+..+++.|.+.+ ..+...+..++.++..|+.-|..|....... =.++++.+
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~v-s~ee~~~~ 150 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPV-SPEEKEKL 150 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CHHHHHHH
Confidence 34666777777777777777777777777777777775 4456788888888999999998888533332 25667777
Q ss_pred HHHHHHHHHHHHHHHH
Q 001058 680 QNELEELVKILNDRCK 695 (1170)
Q Consensus 680 Q~kLeELEKaL~Earq 695 (1170)
......+.+....|++
T Consensus 151 ~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 151 EKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777766666655544
No 234
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.24 E-value=0.053 Score=58.58 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=20.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEK 652 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ 652 (1170)
+++.++++|+.+++++..|+..++.++..+|+++.++|..
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555544
No 235
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.18 Score=60.80 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-------HHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEIL-------TSREKIQFCSTKMQELI-------LYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYK 630 (1170)
Q Consensus 565 aqKKL~ELEaEI~-------~lreEIE~lrtQMQELq-------m~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~K 630 (1170)
|-.||-+|++++- +-+++.+.+.+.-+++. .+..|+.++|.+.+.+-+++=.+.-+|+.+-=.++|
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4444555555544 44444444444444333 344444444544444444444444444333333457
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH-HHHH-HHHHHHHHHHHHhCccc----
Q 001058 631 QSGDVASKL---TLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ-NELE-ELVKILNDRCKQYGLRA---- 701 (1170)
Q Consensus 631 QISELqsqI---A~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ-~kLe-ELEKaL~Earqq~GL~a---- 701 (1170)
+|+.|...- .-+..+++.+-+...-|+.++.++ .+|+.|- ++|+ .||-+.+|+-|++.|+-
T Consensus 185 qVs~LR~sQVEyEglkheikRleEe~elln~q~ee~----------~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q 254 (772)
T KOG0999|consen 185 QVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEA----------IRLKEIAEKQLEEALETLQQEREQKNALKKELSQ 254 (772)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 776666442 222334444444444444444442 2333333 5566 34555555555555443
Q ss_pred -----CccccccccCCcccCccccccccc
Q 001058 702 -----KPTLLVELPFGWQPGIQEGTADWD 725 (1170)
Q Consensus 702 -----K~~~~vElp~gw~~~~qe~a~~w~ 725 (1170)
.-..+.-|-|+..--.-|-.++=+
T Consensus 255 ~~n~e~~~~~n~l~~sldgk~~eDga~pn 283 (772)
T KOG0999|consen 255 YRNAEDISSLNHLLFSLDGKFGEDGAEPN 283 (772)
T ss_pred hcchhhhhhhhhhheecccccccccCCCC
Confidence 222334555555533444444444
No 236
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.23 E-value=0.0061 Score=62.96 Aligned_cols=62 Identities=29% Similarity=0.314 Sum_probs=52.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHH---HcCCCCHHHHH----HHHHHhCCCCCCCcCHHHHHHHHHHHHH
Q 001058 394 KYTKVFVQVDIDRDGKITGEQAYNLF---LSWRLPREVLK----QVWDLSDQDNDGMLSLKEFCTALYLMER 458 (1170)
Q Consensus 394 eyreaF~~fDkDgDG~ISgdELr~~f---LGS~LpeeeL~----qIWdLaD~D~DGkLdfdEF~iAM~LIe~ 458 (1170)
+..-+|+.+|-|+|++|..++|...+ .+..|+.+++. +|++++|.|+||+|++.||- |+|-+
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe---~~i~r 177 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFE---HVILR 177 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH---HHHHh
Confidence 44557999999999999999999988 35688888764 56789999999999999998 66654
No 237
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.23 E-value=0.29 Score=62.32 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=45.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 591 QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQ 658 (1170)
Q Consensus 591 QELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqq 658 (1170)
+.|.--.++...+|..+.+++..+|+.++.....|+.+.++|.+|++-+-.+|.+-.++++||..|..
T Consensus 491 knlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 491 KNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555556666666667777777777777777777778888888888777765
No 238
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.22 E-value=0.4 Score=54.54 Aligned_cols=68 Identities=15% Similarity=0.180 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHH
Q 001058 559 LKEATEADKKVEELEKEI----LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE 626 (1170)
Q Consensus 559 rqEAEEaqKKL~ELEaEI----~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYE 626 (1170)
++|++-+..|..+|+..+ ..+.+-|-.|..|+-.|...+.++--+|..-+.-..+|+.|||..+.++.
T Consensus 30 ~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLa 101 (305)
T PF14915_consen 30 LEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLA 101 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444555555565554 23333344555566666666666555555555555566666666555444
No 239
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=96.22 E-value=0.13 Score=58.01 Aligned_cols=26 Identities=4% Similarity=-0.055 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 633 GDVASKLTLEEATFRDIQEKKMELYQ 658 (1170)
Q Consensus 633 SELqsqIA~LEAeLQDIQeQ~~eLqq 658 (1170)
.+.+.++...+++++.++.++..+..
T Consensus 155 ~~a~~~~~~a~~~l~~a~~~~~~~~~ 180 (346)
T PRK10476 155 DQARTAQRDAEVSLNQALLQAQAAAA 180 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555544444433
No 240
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.21 E-value=0.22 Score=55.47 Aligned_cols=25 Identities=12% Similarity=0.132 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 001058 674 QHADHIQNELEELVKILNDRCKQYG 698 (1170)
Q Consensus 674 eRIkqiQ~kLeELEKaL~Earqq~G 698 (1170)
.++..++.+|..++..+.++..++.
T Consensus 179 ~~~~~~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 179 TDVDLAQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466667777777766666655443
No 241
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=96.21 E-value=0.18 Score=64.17 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhhHHHHHHHHHH---------------------hcHHHHH
Q 001058 566 DKKVEELEKEILTSREKIQFCSTKMQ-----ELILYKSRCDNRLNEITERVS---------------------GDKREVE 619 (1170)
Q Consensus 566 qKKL~ELEaEI~~lreEIE~lrtQMQ-----ELqm~kqR~edELneI~eEvs---------------------aLKrEIE 619 (1170)
.++-.+|+.||++.+++++.|++.+. +-+.-+.|-+.-|.+++.+|. +++.|+.
T Consensus 1062 s~Is~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqElk 1141 (1439)
T PF12252_consen 1062 SKISSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQELK 1141 (1439)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888775221 111222222333333444443 3333333
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhC--CCCCccHHHHHHHHHHHHH
Q 001058 620 LLAKKYEEKY--------KQSGDVASKLTLEEATFRDIQEKK-----MELYQAILKMEG--ESGDGTLQQHADHIQNELE 684 (1170)
Q Consensus 620 sLrqKYEE~~--------KQISELqsqIA~LEAeLQDIQeQ~-----~eLqqALqkLE~--r~edA~LQeRIkqiQ~kLe 684 (1170)
.||.|--.++ .. |..||.+|+.++.++ .++-.+|..|+. -+....++..|..++..|.
T Consensus 1142 lLRnEK~Rmh~~~dkVDFSD-------IEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnltdvK~missf~d~la 1214 (1439)
T PF12252_consen 1142 LLRNEKIRMHSGTDKVDFSD-------IEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLTDVKSMISSFNDRLA 1214 (1439)
T ss_pred HHHhHHHhhccCCCcccHHH-------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhh
Confidence 3333322221 33 334444454444442 223334444442 1234688999999999999
Q ss_pred HHHHHHHHHHHHhCcccCcccc
Q 001058 685 ELVKILNDRCKQYGLRAKPTLL 706 (1170)
Q Consensus 685 ELEKaL~Earqq~GL~aK~~~~ 706 (1170)
++|-.++|+.|++|=+-.++.+
T Consensus 1215 eiE~LrnErIKkHGaSkePLDl 1236 (1439)
T PF12252_consen 1215 EIEFLRNERIKKHGASKEPLDL 1236 (1439)
T ss_pred HHHHHHHHHhhccCCCCCccch
Confidence 9999999999999987766655
No 242
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.14 Score=63.98 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=11.8
Q ss_pred ceeeccCCcCCCCccC-Cccc
Q 001058 269 SLVVSGNGFSSDSLFG-DVFS 288 (1170)
Q Consensus 269 ~~~~sgng~~s~s~fg-d~fs 288 (1170)
|=||-||--+-+.|-- ++|+
T Consensus 342 AevVRgn~~nQ~~F~~v~~p~ 362 (970)
T KOG0946|consen 342 AEVVRGNARNQDEFADVTAPS 362 (970)
T ss_pred HHHHHhchHHHHHHhhccCCC
Confidence 3377788766665443 5544
No 243
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.19 E-value=0.17 Score=63.28 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHHHH
Q 001058 639 LTLEEATFRDIQEKKMELYQAILKMEGES-GDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 639 IA~LEAeLQDIQeQ~~eLqqALqkLE~r~-edA~LQeRIkqiQ~kLeEL 686 (1170)
+.+||.+-=.+|+|+..|.+.-.+.|+-+ +...|++++.-++.+|+|+
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666777666666666655333 3456677777777777666
No 244
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=96.18 E-value=0.18 Score=49.80 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 644 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEA 644 (1170)
++....+++.++..+...|+-++.-..+|..++ ..|+.-+..|+++-+...+-|.+|+++|.++..
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqk--------------d~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQK--------------DQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777776665555542222 224444455555555555666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001058 645 TFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 645 eLQDIQeQ~~eLqqALqkLE 664 (1170)
.|.+-+-.+.+|+..|.+.+
T Consensus 73 ~le~eK~ak~~l~~r~~k~~ 92 (107)
T PF09304_consen 73 NLEDEKQAKLELESRLLKAQ 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66665555555666666544
No 245
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.17 E-value=0.12 Score=63.98 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=17.2
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 607 ITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE 642 (1170)
Q Consensus 607 I~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~L 642 (1170)
+++++.+++..++.|+++|++..+|+.+|..+|+.+
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l 136 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKL 136 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555545444444444433
No 246
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.0061 Score=69.08 Aligned_cols=66 Identities=26% Similarity=0.475 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCCcCHHHHH
Q 001058 379 QSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFC 450 (1170)
Q Consensus 379 qsq~~Wp~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fL--GS~LpeeeL~qIWdLaD~D~DGkLdfdEF~ 450 (1170)
..+..| .+++.+ +.|...|+|+||+|+++||+..++ +....+.+...|+.++|.|+||+|+++|-+
T Consensus 233 ~~epeW-v~~Ere-----~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl 300 (325)
T KOG4223|consen 233 EEEPEW-VLTERE-----QFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEIL 300 (325)
T ss_pred CCCccc-ccccHH-----HHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHh
Confidence 456789 666654 556677999999999999998774 556678899999999999999999999976
No 247
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=96.15 E-value=0.12 Score=58.03 Aligned_cols=95 Identities=22% Similarity=0.368 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 582 KIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 582 EIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
+++|||+++.|+...+...+. -.....++...+|.++..+.+++ ++...+...|.++++++.++.+..+-|.
T Consensus 167 kV~WLR~~L~Ei~Ea~e~~~~-~~~~e~eke~~~r~l~~~~~ELe-------~~~EeL~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKEIYDQ-HETREEEKEEKDRKLELKKEELE-------ELEEELKQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999987655444322 22233334444444554444444 4444555566666666666666666666
Q ss_pred HHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 662 KMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 662 kLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
.|+... +.|.++|.-+..+.+..
T Consensus 239 ~l~~~~--~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 239 ELEMES--TRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHh
Confidence 666655 66777777777776654
No 248
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=96.14 E-value=0.13 Score=64.15 Aligned_cols=126 Identities=14% Similarity=0.155 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 001058 577 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERV--SGDKREVELLAKKYEEKYKQSGDVASKLTLEE-------ATFR 647 (1170)
Q Consensus 577 ~~lreEIE~lrtQMQELqm~kqR~edELneI~eEv--saLKrEIEsLrqKYEE~~KQISELqsqIA~LE-------AeLQ 647 (1170)
....+-++|+..|+.+|..+....+.+|+.-+++- -..+.+.+.+-.++.++..|+.+|+.+++.+. -+++
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~ 342 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYR 342 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 33344455666666666665555555555544321 12233333333333444444444444433332 3566
Q ss_pred HHHHHHHHHHHHHHHHh-CCCCCccHHHHHHHHHHHHHHHH---HHHHHHHHHhCcccC
Q 001058 648 DIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELV---KILNDRCKQYGLRAK 702 (1170)
Q Consensus 648 DIQeQ~~eLqqALqkLE-~r~edA~LQeRIkqiQ~kLeELE---KaL~Earqq~GL~aK 702 (1170)
.++.|+++|++++++++ ........+.++.+++.+.+-.+ ..|-+++++..+..-
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a 401 (726)
T PRK09841 343 ALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS 401 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66677777777777665 22233455666777766666444 344455555555543
No 249
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=96.13 E-value=0.43 Score=55.68 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVA 636 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE-~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELq 636 (1170)
..+......+....+.++ .++..+.|....++.++..|..+..+|...+++|+.|+..+.++..-++-.+
T Consensus 229 ~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaq 299 (384)
T PF03148_consen 229 SILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQ 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 444444555555555566 7777888888888888888888888888888888888888777764444433
No 250
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.12 E-value=0.0099 Score=76.70 Aligned_cols=68 Identities=21% Similarity=0.552 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HcCCCC-------HHHHHHHHHHhCCCCCCCcCHHHHHHHH
Q 001058 386 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLF--LSWRLP-------REVLKQVWDLSDQDNDGMLSLKEFCTAL 453 (1170)
Q Consensus 386 ~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~f--LGS~Lp-------eeeL~qIWdLaD~D~DGkLdfdEF~iAM 453 (1170)
-++++.+.+|.-+|+.||++.+|.|+..+++.|| +|..|| +.++.+|++++|.+.+|+|++.+|+..|
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 5899999999999999999999999999999999 566553 4489999999999999999999998743
No 251
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=96.10 E-value=0.64 Score=56.34 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=14.7
Q ss_pred ccccCC-cccCccccccccccchhcccc
Q 001058 707 VELPFG-WQPGIQEGTADWDEDWDKLED 733 (1170)
Q Consensus 707 vElp~g-w~~~~qe~a~~w~edwd~~~d 733 (1170)
..||.- .+.|+---+.+-++ |+.+..
T Consensus 454 ~~l~~~a~~~Gv~s~~~L~~r-f~~v~~ 480 (582)
T PF09731_consen 454 SSLPPEAAQRGVPSEAQLRNR-FERVAP 480 (582)
T ss_pred HhcCHHHhhCCCCCHHHHHHH-HHHHHH
Confidence 455553 33366666666666 666644
No 252
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=96.09 E-value=0.22 Score=54.85 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 566 DKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 637 (1170)
Q Consensus 566 qKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqs 637 (1170)
..++..++.++..+..+++.|..+++..........+....+..+...|...|+.+...+.++..++..|..
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 356777777788888888888888887777777777777778777778888888887777777766666554
No 253
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=96.08 E-value=0.12 Score=58.84 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHH
Q 001058 646 FRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVK 688 (1170)
Q Consensus 646 LQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEK 688 (1170)
+.++.+++.++..+|...+.+- ...+.++..+|..|..++.
T Consensus 129 ~~~~t~~la~~t~~L~~~~~~l--~q~~~k~~~~q~~l~~~~~ 169 (301)
T PF06120_consen 129 QADATRKLAEATRELAVAQERL--EQMQSKASETQATLNDLTE 169 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444333 2234444555555554433
No 254
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=96.07 E-value=0.14 Score=49.85 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001058 569 VEELEKEILTSREKIQFCSTKMQELILYKSRCDN 602 (1170)
Q Consensus 569 L~ELEaEI~~lreEIE~lrtQMQELqm~kqR~ed 602 (1170)
+.++-.+++.++++++.+..+++.|.+..+++..
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~ 38 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEK 38 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777777777777666554
No 255
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.07 E-value=0.15 Score=51.71 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 614 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 614 LKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
++..++.|+.++++...++..++.+...++.+++.++..+..+.++++
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333
No 256
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=96.05 E-value=0.4 Score=53.61 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 001058 630 KQSGDVASKLTLE--EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE-ELVKILNDRCKQY 697 (1170)
Q Consensus 630 KQISELqsqIA~L--EAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLe-ELEKaL~Earqq~ 697 (1170)
+.+.+.+..|+.+ ++.+-.+-.=+.+.++.++.+.+-.|-..|-.+|+++...++ .|+..|.+.|..+
T Consensus 125 ~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~F 195 (291)
T PF10475_consen 125 KTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDF 195 (291)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445555555554 456677777777788888777778888888888888888888 6788888888743
No 257
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=96.03 E-value=0.22 Score=62.10 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=74.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhC
Q 001058 592 ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE------EATFRDIQEKKMELYQAILKMEG 665 (1170)
Q Consensus 592 ELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~L------EAeLQDIQeQ~~eLqqALqkLE~ 665 (1170)
-|.++..||..-+.... ..|....+.|..+|+.+++++.+|.+.|-+. .....++++.|+.|+..+.++..
T Consensus 221 Ri~~F~~ra~~~fp~a~---e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~ 297 (683)
T PF08580_consen 221 RIEEFQSRAESIFPSAC---EELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQE 297 (683)
T ss_pred HHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56788899866444443 4567777778899998889999888776554 56888899999999999988774
Q ss_pred CC-------CCccHHHHHHHHHHHHHHH----HHHHHHHHHHhCcccCcc
Q 001058 666 ES-------GDGTLQQHADHIQNELEEL----VKILNDRCKQYGLRAKPT 704 (1170)
Q Consensus 666 r~-------edA~LQeRIkqiQ~kLeEL----EKaL~Earqq~GL~aK~~ 704 (1170)
.. ....|-.+|+.+-++...- .|++-+..=.+||..|-+
T Consensus 298 ~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~gv~~r~n 347 (683)
T PF08580_consen 298 AIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLSIIDKGVADRLN 347 (683)
T ss_pred cccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhhHHHHhh
Confidence 42 1244566666666555432 344444444677655555
No 258
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=96.03 E-value=0.16 Score=56.02 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 642 EEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 696 (1170)
Q Consensus 642 LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq 696 (1170)
|+.++..++.++..|..+... ...+...++.+|.+....+.++.+.
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~---------ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESER---------KEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444443 2333444444444444444444443
No 259
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.03 E-value=0.14 Score=62.27 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 671 TLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 671 ~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
.|...=..++.+|..|+..|.+...
T Consensus 404 ~L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 404 SLRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555444
No 260
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.01 E-value=0.34 Score=60.49 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKM 590 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQM 590 (1170)
++.+..+++.|.+.+++-+.-|+.++
T Consensus 111 LQn~c~~lE~ekq~lQ~ti~~~q~d~ 136 (1265)
T KOG0976|consen 111 LQNKCLRLEMEKQKLQDTIQGAQDDK 136 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 261
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.00 E-value=0.23 Score=58.98 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 577 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 644 (1170)
Q Consensus 577 ~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEA 644 (1170)
+++.+.++.++.+..+|+.+.+..++-.+.++..+.+----++.|+.+||++..||..|++++-.|..
T Consensus 291 ~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~ 358 (622)
T COG5185 291 MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHK 358 (622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444444444444444444444433333333333322233444444555444555555555444433
No 262
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.52 Score=57.60 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001058 645 TFRDIQEKKMELYQAILKMEGESG-DGTLQQHADHIQNELEELVKILNDRCKQYG 698 (1170)
Q Consensus 645 eLQDIQeQ~~eLqqALqkLE~r~e-dA~LQeRIkqiQ~kLeELEKaL~Earqq~G 698 (1170)
.+.++-+...+++++|+.|.+..+ -..|+++++.++.+|.++=++|+..|+++.
T Consensus 319 ~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A 373 (557)
T COG0497 319 TIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAA 373 (557)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556667777777775543 266777888888887777777777777654
No 263
>PRK09343 prefoldin subunit beta; Provisional
Probab=95.97 E-value=0.2 Score=49.92 Aligned_cols=36 Identities=6% Similarity=0.062 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN 602 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~ed 602 (1170)
.++.++-.+++.+++++..+..+.+.|....++++.
T Consensus 7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~ 42 (121)
T PRK09343 7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINK 42 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666666666655555555433
No 264
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=95.96 E-value=0.14 Score=49.35 Aligned_cols=31 Identities=6% Similarity=0.005 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001058 572 LEKEILTSREKIQFCSTKMQELILYKSRCDN 602 (1170)
Q Consensus 572 LEaEI~~lreEIE~lrtQMQELqm~kqR~ed 602 (1170)
+..++..++++++.+..+++.|.....++.+
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~ 34 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKK 34 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666555
No 265
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.31 Score=60.70 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=46.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhC----CCCCccHHHHHHHHHH
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEK-------KMELYQAILKMEG----ESGDGTLQQHADHIQN 681 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ-------~~eLqqALqkLE~----r~edA~LQeRIkqiQ~ 681 (1170)
.+++.++.|+.+.++..+++.+++.++++++.+|.+...+ +..|..-|..+.. ...+..|.++|++|+.
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKEYKE 642 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHh
Confidence 5556666677777777777777777777776655555444 4444444444331 2246788888888887
Q ss_pred HHH
Q 001058 682 ELE 684 (1170)
Q Consensus 682 kLe 684 (1170)
.|.
T Consensus 643 ~Lk 645 (698)
T KOG0978|consen 643 LLK 645 (698)
T ss_pred cee
Confidence 664
No 266
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.93 E-value=0.22 Score=64.42 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=10.0
Q ss_pred HHHHHHHhCCCCCCCcC---HHHHH
Q 001058 429 LKQVWDLSDQDNDGMLS---LKEFC 450 (1170)
Q Consensus 429 L~qIWdLaD~D~DGkLd---fdEF~ 450 (1170)
.+.++...=.+.+-+|. +++|.
T Consensus 312 akdLI~~ll~~~e~RLgrngiedik 336 (1317)
T KOG0612|consen 312 AKDLIEALLCDREVRLGRNGIEDIK 336 (1317)
T ss_pred HHHHHHHHhcChhhhcccccHHHHH
Confidence 34444444344444444 55554
No 267
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.93 E-value=0.29 Score=59.30 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHhCccc
Q 001058 644 ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE-ELVKILNDRCKQYGLRA 701 (1170)
Q Consensus 644 AeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLe-ELEKaL~Earqq~GL~a 701 (1170)
..+..+++++.++++.|.+ +-++|..+|.+.. +|++.+++.++.+||..
T Consensus 346 ~~le~L~~el~~l~~~l~~---------~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m~~ 395 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDK---------AAVALSLIRRKAAERLAKRVEQELKALAMEK 395 (563)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4555555555555555554 2355777765555 88999999999999864
No 268
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.93 E-value=0.44 Score=58.41 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=45.4
Q ss_pred HHhcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHHH
Q 001058 611 VSGDKREVEL-LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD--GTLQQHADHIQNELEELV 687 (1170)
Q Consensus 611 vsaLKrEIEs-LrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ed--A~LQeRIkqiQ~kLeELE 687 (1170)
+.+...+.+. |..+-.+++.|+.+++.+|..++..+.+.+++...+...|.+-...+.. ..+=.++.++|..+..||
T Consensus 176 ~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE 255 (629)
T KOG0963|consen 176 LEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLE 255 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443 2444445556777777777777777777777777666664431111100 112233445555555555
Q ss_pred HHHHHHHHHhCcc
Q 001058 688 KILNDRCKQYGLR 700 (1170)
Q Consensus 688 KaL~Earqq~GL~ 700 (1170)
+.....+.|+-.+
T Consensus 256 ~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 256 REVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHhh
Confidence 4444444444433
No 269
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.93 E-value=0.094 Score=65.54 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=10.4
Q ss_pred eeeccCCcCCCCccCCcccCCC
Q 001058 270 LVVSGNGFSSDSLFGDVFSASP 291 (1170)
Q Consensus 270 ~~~sgng~~s~s~fgd~fsa~~ 291 (1170)
+|+-||| |||-...
T Consensus 244 ~vL~~ng--------~v~~~~~ 257 (717)
T PF10168_consen 244 FVLRENG--------DVYLLYT 257 (717)
T ss_pred EEEecCC--------CEEEEEE
Confidence 4788999 8887553
No 270
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.11 Score=64.73 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=22.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
+++-|.|.|+.+|.+...+.++|.+++..++.+|..+.....++.+..+
T Consensus 682 ~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e 730 (970)
T KOG0946|consen 682 ELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAE 730 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHH
Confidence 3444444455555444444455555555555444444444443333333
No 271
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.91 E-value=0.21 Score=64.61 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=44.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH--HHHhcHHHHHHHHHHHHHHHHHHH
Q 001058 556 NAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITE--RVSGDKREVELLAKKYEEKYKQSG 633 (1170)
Q Consensus 556 nserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~e--EvsaLKrEIEsLrqKYEE~~KQIS 633 (1170)
...+...+++...+.+++.+|..|++.++...++++.++.-+......++...+ ....++++++.++.+++++..++.
T Consensus 612 e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~ 691 (1317)
T KOG0612|consen 612 EKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHH 691 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344666777788888888777776666555433322211222333322 233566666777777777776655
Q ss_pred HH
Q 001058 634 DV 635 (1170)
Q Consensus 634 EL 635 (1170)
.+
T Consensus 692 ~~ 693 (1317)
T KOG0612|consen 692 RL 693 (1317)
T ss_pred HH
Confidence 55
No 272
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.91 E-value=0.44 Score=61.32 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCCCC---cccH-----HHHHHHH
Q 001058 393 QKYTKVFVQVDIDRDG---KITG-----EQAYNLF 419 (1170)
Q Consensus 393 qeyreaF~~fDkDgDG---~ISg-----dELr~~f 419 (1170)
.-+++||+.++..+.- +|+. +||..+|
T Consensus 166 Ral~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLL 200 (1041)
T KOG0243|consen 166 RALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLL 200 (1041)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhc
Confidence 3578899999765422 3333 6777766
No 273
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.91 E-value=0.19 Score=58.97 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhcHHHHHHHHHHHHHHH------HHH-------
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSR-CDNRLNEITERVSGDKREVELLAKKYEEKY------KQS------- 632 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR-~edELneI~eEvsaLKrEIEsLrqKYEE~~------KQI------- 632 (1170)
+|+.-|+++-..-+.-++.||..+=+|...... -+.-.+.+-++|.+|+.|-.-|++||++.. ..|
T Consensus 165 ~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~ 244 (552)
T KOG2129|consen 165 NKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVH 244 (552)
T ss_pred HHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCcccc
Confidence 344444444333333344444444333322211 122235567777788888888888888754 222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHH-HHHHHHHHHHHHhCcccCccc
Q 001058 633 ----GDVASKLTLEEATFRDIQEKKMELYQAILKMEGES--GDGTLQQHADHIQNELE-ELVKILNDRCKQYGLRAKPTL 705 (1170)
Q Consensus 633 ----SELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~--edA~LQeRIkqiQ~kLe-ELEKaL~Earqq~GL~aK~~~ 705 (1170)
..+...|..|.+++..++.+|...+.++++-..++ |.-...++..+.|.+|. +||+ +.-.|+++.=+-+...
T Consensus 245 gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~er-Realcr~lsEsessle 323 (552)
T KOG2129|consen 245 GDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELER-REALCRMLSESESSLE 323 (552)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHH
Confidence 23344466666666666666666666665422222 11222334444444444 3332 2234666554444444
Q ss_pred ccc
Q 001058 706 LVE 708 (1170)
Q Consensus 706 ~vE 708 (1170)
.+|
T Consensus 324 mde 326 (552)
T KOG2129|consen 324 MDE 326 (552)
T ss_pred HHH
Confidence 443
No 274
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.90 E-value=0.11 Score=56.96 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001058 641 LEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 641 ~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
....+|++|...|..|+..|..
T Consensus 50 ~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 50 AHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 275
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.90 E-value=0.0021 Score=81.03 Aligned_cols=118 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH-------HHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY-------KQSGDVAS 637 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~-------KQISELqs 637 (1170)
+++.+.+++..+..+..+++.++.....+...+-.+..+|.+...++..++++...|+.+++++. +.|.+|+.
T Consensus 382 fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek 461 (859)
T PF01576_consen 382 FDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEK 461 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHH
Confidence 44444455444444444444444444444444444444445555555555555555544444443 44555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 001058 638 KLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 684 (1170)
Q Consensus 638 qIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLe 684 (1170)
.+..||.++..++.++.+++.+|..+++.. ..|+.+|.+++.+++
T Consensus 462 ~kr~LE~e~~El~~~leE~E~~l~~~E~~~--lRl~~el~~~r~e~e 506 (859)
T PF01576_consen 462 AKRRLEQEKEELQEQLEEAEDALEAEEQKK--LRLQVELQQLRQEIE 506 (859)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 666777777777777777777777766666 666666766665554
No 276
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.89 E-value=0.21 Score=64.01 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=12.8
Q ss_pred CCceeeccC--CcCCCCcc--CCcccCCC
Q 001058 267 SKSLVVSGN--GFSSDSLF--GDVFSASP 291 (1170)
Q Consensus 267 ~k~~~~sgn--g~~s~s~f--gd~fsa~~ 291 (1170)
.|.|.|..+ +..++-.| --||.+.+
T Consensus 79 ~kEV~v~~~~~sk~~~k~ftFDkVFGpes 107 (1041)
T KOG0243|consen 79 RKEVAVRQTIASKQIDKTFTFDKVFGPES 107 (1041)
T ss_pred cceEEEecccccccccceeecceeeCcch
Confidence 466777666 33223333 35666543
No 277
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.88 E-value=0.52 Score=59.54 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCC-------CCccHH-H-HHHHHHHHHHHHHHHHHHH
Q 001058 630 KQSGDVASKLTLEEATFR-------DIQEKKMELYQAILKMEGES-------GDGTLQ-Q-HADHIQNELEELVKILNDR 693 (1170)
Q Consensus 630 KQISELqsqIA~LEAeLQ-------DIQeQ~~eLqqALqkLE~r~-------edA~LQ-e-RIkqiQ~kLeELEKaL~Ea 693 (1170)
.++.+|+.+|..||.+|+ ++-.+|..|+.+|....... ++..++ + +|..+-.+|.|=.|.+.-.
T Consensus 673 ~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sL 752 (769)
T PF05911_consen 673 AEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASL 752 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443 44455666666666544221 111111 2 5666666666666555555
Q ss_pred HHHh
Q 001058 694 CKQY 697 (1170)
Q Consensus 694 rqq~ 697 (1170)
.||+
T Consensus 753 GkQL 756 (769)
T PF05911_consen 753 GKQL 756 (769)
T ss_pred HHHH
Confidence 5543
No 278
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.15 Score=60.87 Aligned_cols=88 Identities=18% Similarity=0.086 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 644 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEA 644 (1170)
+..+|.||++.-.+---+|+.+|.+..+|++.+=|+-..+.-++.+=-.|+.+-|+||.|++.+.++++.= ..+.+
T Consensus 360 i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~P----nq~k~ 435 (508)
T KOG3091|consen 360 IGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAP----NQLKA 435 (508)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcCh----HHHHH
Confidence 44677788766677778888888888888887777655332222222378888889999999888777543 33444
Q ss_pred HHHHHHHHHHHH
Q 001058 645 TFRDIQEKKMEL 656 (1170)
Q Consensus 645 eLQDIQeQ~~eL 656 (1170)
.|+.++++++..
T Consensus 436 Rl~~L~e~~r~q 447 (508)
T KOG3091|consen 436 RLDELYEILRMQ 447 (508)
T ss_pred HHHHHHHHHHhh
Confidence 444444444433
No 279
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=95.86 E-value=0.72 Score=49.35 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 001058 572 LEKEILTSREKIQ 584 (1170)
Q Consensus 572 LEaEI~~lreEIE 584 (1170)
.+.++..++++++
T Consensus 58 akee~~~~r~~~E 70 (201)
T PF12072_consen 58 AKEEAQKLRQELE 70 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 280
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=95.85 E-value=0.39 Score=51.84 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 001058 630 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES 667 (1170)
Q Consensus 630 KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ 667 (1170)
.++..|+.++..++..+..++.++..|+..|..+..+.
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~ 136 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQ 136 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555444
No 281
>PRK11519 tyrosine kinase; Provisional
Probab=95.83 E-value=0.24 Score=61.79 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 001058 578 TSREKIQFCSTKMQELILYKSRCDNRLNEITERVS--GDKREVELLAKKYEEKYKQSGDVASKLTLEE-------ATFRD 648 (1170)
Q Consensus 578 ~lreEIE~lrtQMQELqm~kqR~edELneI~eEvs--aLKrEIEsLrqKYEE~~KQISELqsqIA~LE-------AeLQD 648 (1170)
..++-++|++.|++++..+....+.+|++-+.+-. .+..+.+.+-.++.+..+|+.+|+.+++.+. -.++.
T Consensus 264 ~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~ 343 (719)
T PRK11519 264 EASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRT 343 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHH
Confidence 33444567777776666666666655555443211 2333333333333334444444444443332 24555
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHHHHH---HHHHHHHHHhCcc
Q 001058 649 IQEKKMELYQAILKMEGES-GDGTLQQHADHIQNELEELV---KILNDRCKQYGLR 700 (1170)
Q Consensus 649 IQeQ~~eLqqALqkLE~r~-edA~LQeRIkqiQ~kLeELE---KaL~Earqq~GL~ 700 (1170)
++.+++.|++++.+++++- .....+.++.+++.+.+-.+ ..|-+++++..+.
T Consensus 344 l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~ 399 (719)
T PRK11519 344 LLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKIT 399 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6666666666666655222 22334555555555555333 3334444444433
No 282
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=95.82 E-value=0.49 Score=57.28 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001058 673 QQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 673 QeRIkqiQ~kLeELEKaL~Earq 695 (1170)
..+|..++.+|+.|++++..+.+
T Consensus 377 ~~~l~~~~~~~~~le~~~~~~~~ 399 (582)
T PF09731_consen 377 LAKLAELNSRLKALEEALDARSE 399 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666655554
No 283
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.81 E-value=0.089 Score=61.59 Aligned_cols=6 Identities=33% Similarity=1.165 Sum_probs=2.6
Q ss_pred ccccCC
Q 001058 898 SVWGFD 903 (1170)
Q Consensus 898 svw~~~ 903 (1170)
-||+.|
T Consensus 244 r~Wnvd 249 (459)
T KOG0288|consen 244 RLWNVD 249 (459)
T ss_pred eeeecc
Confidence 344444
No 284
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.81 E-value=0.0041 Score=60.94 Aligned_cols=62 Identities=23% Similarity=0.360 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHH
Q 001058 390 SEVQKYTKVFVQVDIDRDGKITGEQAYNLFLSWRLPREVLKQVWDLSDQDNDGMLSLKEFCT 451 (1170)
Q Consensus 390 EEkqeyreaF~~fDkDgDG~ISgdELr~~fLGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~i 451 (1170)
..+..+.=.|..+|.|+||+|+..||+.+..-....+.=+...++.+|.|+||.|++.|++.
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34556677799999999999999999998754455666789999999999999999999974
No 285
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=95.81 E-value=0.007 Score=68.93 Aligned_cols=124 Identities=13% Similarity=0.193 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 561 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 640 (1170)
Q Consensus 561 EAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA 640 (1170)
+.+.+-..|..||.-+..+++.+..+..++.+|+-..+-....|.+++.+|..++.+|..|+..+.++...|..|...|.
T Consensus 29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls 108 (326)
T PF04582_consen 29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLS 108 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhh
Confidence 33334445555666666666666666666666555555555555555555555556666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCccHHHHHHHHHHHHHHHH
Q 001058 641 LEEATFRDIQEKKMELYQAILKME-GESGDGTLQQHADHIQNELEELV 687 (1170)
Q Consensus 641 ~LEAeLQDIQeQ~~eLqqALqkLE-~r~edA~LQeRIkqiQ~kLeELE 687 (1170)
..+..|.++|..+..+..++..|+ +.. .+.-.|.++++.|+.||
T Consensus 109 ~h~ssIS~Lqs~v~~lsTdvsNLksdVS---t~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 109 DHSSSISDLQSSVSALSTDVSNLKSDVS---TQALNITDLESRVKALE 153 (326)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhhhhhhhhhhhhhhhhh---hhcchHhhHHHHHHHHh
Confidence 666677777777776666666655 332 23334555555555554
No 286
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=95.78 E-value=0.26 Score=58.03 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 618 VELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 618 IEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
++.|+++|.++.+++.++...+.....++..++.++.++++.+.
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~ 330 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIA 330 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHH
Confidence 44566666666666666665555444455555555544444444
No 287
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.75 E-value=0.45 Score=54.44 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=23.6
Q ss_pred hcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 613 GDKREVELLAKKYEEKY-KQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~-KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
+++.|--.|+..++..+ -.|..|..+|..++.+....+..+.+|..+-.++|
T Consensus 117 qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlE 169 (310)
T PF09755_consen 117 QLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLE 169 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Confidence 34444334444443322 33455555555555544444444444444444433
No 288
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.72 E-value=1.1 Score=49.00 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=13.3
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 001058 607 ITERVSGDKREVELLAKKYEEKYKQSGDV 635 (1170)
Q Consensus 607 I~eEvsaLKrEIEsLrqKYEE~~KQISEL 635 (1170)
+.+.+..+.+.+-.|..+|+....-|..+
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~ 109 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGY 109 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555444333333
No 289
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.71 E-value=0.71 Score=57.28 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Q 001058 670 GTLQQHADHIQNELEELVKILND 692 (1170)
Q Consensus 670 A~LQeRIkqiQ~kLeELEKaL~E 692 (1170)
.-||++++.+|++|.+|++....
T Consensus 278 ~~LqeE~e~Lqskl~~~~~l~~~ 300 (716)
T KOG4593|consen 278 GLLQEELEGLQSKLGRLEKLQST 300 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777777766543
No 290
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=95.70 E-value=0.77 Score=51.84 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=74.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-
Q 001058 591 QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD- 669 (1170)
Q Consensus 591 QELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ed- 669 (1170)
++|...=..+++.|..|..++.-+--|+-+++..|-....+....=..|...|..|+..+.+...|..+|++|+....+
T Consensus 85 ~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s 164 (271)
T PF13805_consen 85 KQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQS 164 (271)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCC
Confidence 4566666667777888888888888888888777776665555555667777788888888888888888877732222
Q ss_pred ---ccHHHHHHHHHHHHHHHH-------------------HHHHHHHHHhCcccCc
Q 001058 670 ---GTLQQHADHIQNELEELV-------------------KILNDRCKQYGLRAKP 703 (1170)
Q Consensus 670 ---A~LQeRIkqiQ~kLeELE-------------------KaL~Earqq~GL~aK~ 703 (1170)
..|+++|..+..+..-.| +++.|+|+++-|.+.+
T Consensus 165 ~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~~ 220 (271)
T PF13805_consen 165 PKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAILAEY 220 (271)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666554333222 5566667666666644
No 291
>PRK10698 phage shock protein PspA; Provisional
Probab=95.69 E-value=0.5 Score=51.51 Aligned_cols=86 Identities=5% Similarity=0.063 Sum_probs=38.3
Q ss_pred HhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHH
Q 001058 597 KSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHA 676 (1170)
Q Consensus 597 kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRI 676 (1170)
+..|...+..+..++...+..++.|+.++.+++..|.++..+...|-+..+-++.++. ++..+.. ... ..-=.++
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~-~~~~~~~---~~~-~~a~~~f 168 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD-VRRQLDS---GKL-DEAMARF 168 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC---CCc-chHHHHH
Confidence 3334444444444444444444444444444444444444444444444444444433 3333332 111 1122355
Q ss_pred HHHHHHHHHHH
Q 001058 677 DHIQNELEELV 687 (1170)
Q Consensus 677 kqiQ~kLeELE 687 (1170)
.++..+++++|
T Consensus 169 ~rmE~ki~~~E 179 (222)
T PRK10698 169 ESFERRIDQME 179 (222)
T ss_pred HHHHHHHHHHH
Confidence 66666666665
No 292
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.67 E-value=0.31 Score=61.47 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 568 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 647 (1170)
Q Consensus 568 KL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQ 647 (1170)
...+|+..+....++++.++.+++|+... |.++..++..++..-..++.+++-+......|+.++..+|+++.
T Consensus 604 eK~~Le~~L~~~~d~lE~~~~qL~E~E~~-------L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~ 676 (769)
T PF05911_consen 604 EKEELEMELASCQDQLESLKNQLKESEQK-------LEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAE 676 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33455555555555555555555554444 44444444444444444455555555566677778888888999
Q ss_pred HHHHHHHHHHHHHHH
Q 001058 648 DIQEKKMELYQAILK 662 (1170)
Q Consensus 648 DIQeQ~~eLqqALqk 662 (1170)
.++.++..|+.+|++
T Consensus 677 ~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 677 ELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999887
No 293
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.67 E-value=0.012 Score=43.76 Aligned_cols=25 Identities=40% Similarity=0.498 Sum_probs=17.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q 001058 395 YTKVFVQVDIDRDGKITGEQAYNLF 419 (1170)
Q Consensus 395 yreaF~~fDkDgDG~ISgdELr~~f 419 (1170)
++++|..+|.|+||.|+.+|++.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4566777777777777777776643
No 294
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=95.67 E-value=0.51 Score=55.59 Aligned_cols=113 Identities=12% Similarity=0.182 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH---------
Q 001058 565 ADKKVEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGD--------- 634 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE-~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISE--------- 634 (1170)
+...+.++-.++......++ .+++.+.|.+..+++++..|..+.+||+....+|+.|+..+-.+..-++-
T Consensus 254 l~~~l~~tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt 333 (421)
T KOG2685|consen 254 LDQTLRETANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRT 333 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcc
Confidence 44666666667766667777 78888999999999999999999999999999999887777654411111
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 001058 635 ---------------VASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHI 679 (1170)
Q Consensus 635 ---------------LqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqi 679 (1170)
|-..+..+++.++-+|.++.+-++.+..|.+.+ +.|+.+|.--
T Consensus 334 ~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~--~rLe~di~~k 391 (421)
T KOG2685|consen 334 YRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNHR--ARLERDIAIK 391 (421)
T ss_pred cCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 111234455666666777777777777666666 5566555443
No 295
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.66 E-value=0.45 Score=51.65 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001058 550 EEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEIT 608 (1170)
Q Consensus 550 EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~ 608 (1170)
|.+..++.+..|+-.+-.++.++..++.....++..++..+..-.+....|+++|....
T Consensus 21 e~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~ 79 (202)
T PF06818_consen 21 ESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK 79 (202)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh
Confidence 33444444433433343444444444444444433333333333333334444444433
No 296
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.65 E-value=0.67 Score=52.25 Aligned_cols=102 Identities=10% Similarity=0.064 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 561 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 640 (1170)
Q Consensus 561 EAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA 640 (1170)
|...-+=+|+-|++-+++-+++++..++++..|.+.++++-...+++.....++-++++.=+.++.=+..|++....+|.
T Consensus 33 E~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie 112 (307)
T PF10481_consen 33 ERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIE 112 (307)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333356777788888888999999998888888888877766666666667777777666676666778888788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001058 641 LEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 641 ~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
.||.+|...+.+++..+.+...
T Consensus 113 ~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 113 KLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 8899999999988888877764
No 297
>PRK12704 phosphodiesterase; Provisional
Probab=95.64 E-value=1.1 Score=54.37 Aligned_cols=8 Identities=50% Similarity=0.555 Sum_probs=4.0
Q ss_pred Cccccccc
Q 001058 716 GIQEGTAD 723 (1170)
Q Consensus 716 ~~qe~a~~ 723 (1170)
+||--|.+
T Consensus 197 a~qr~a~~ 204 (520)
T PRK12704 197 AIQRCAAD 204 (520)
T ss_pred HHHhhcch
Confidence 45555543
No 298
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.63 E-value=0.11 Score=56.12 Aligned_cols=8 Identities=38% Similarity=0.679 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 001058 571 ELEKEILT 578 (1170)
Q Consensus 571 ELEaEI~~ 578 (1170)
++++|+.+
T Consensus 97 ~le~el~~ 104 (206)
T PRK10884 97 DLENQVKT 104 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 299
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.63 E-value=0.64 Score=54.01 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=12.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 670 GTLQQHADHIQNELEELVKILNDRC 694 (1170)
Q Consensus 670 A~LQeRIkqiQ~kLeELEKaL~Ear 694 (1170)
..|+.+.+..+..++.|-+.+.|++
T Consensus 345 ~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 345 SVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444443
No 300
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=95.62 E-value=1.2 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHH
Q 001058 604 LNEITERVSGDKREVELLAKKYE 626 (1170)
Q Consensus 604 LneI~eEvsaLKrEIEsLrqKYE 626 (1170)
+..+..+...++++++.|++++.
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666655554
No 301
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.48 Score=57.34 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHH------------------HHHH
Q 001058 564 EADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL------------------AKKY 625 (1170)
Q Consensus 564 EaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsL------------------rqKY 625 (1170)
|++.-+..++.++.+.-|+|..++.+...+.....++.+++++++++-..|.+-.++| .+++
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~El 664 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKEL 664 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555554444333333332 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 626 EEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQ 696 (1170)
Q Consensus 626 EE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq 696 (1170)
.-.-+++..|+..|..+.+.....|.-+.+++.++.+ ..|+-. ....++||.-|.+|-....+-.|+
T Consensus 665 q~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K--~~Y~l~--~~Q~~~iqsiL~~L~~~i~~~~k~ 731 (741)
T KOG4460|consen 665 QLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPK--PTYILS--AYQRKCIQSILKELGEHIREMVKQ 731 (741)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--Cccccc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222777777788877777777766666777777766 666433 456778888888886655555543
No 302
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.60 E-value=0.54 Score=56.67 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=34.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhcHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 591 QELILYKSRCDNRLNEITERVSGDKR--------------EVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKM 654 (1170)
Q Consensus 591 QELqm~kqR~edELneI~eEvsaLKr--------------EIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~ 654 (1170)
++|..|++++.--|......|..||. |++.|+.+.+.++-++..|+.+|..+++++++++.++.
T Consensus 235 ~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~ 312 (511)
T PF09787_consen 235 AELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLE 312 (511)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555444444555455555554 24555556665666666666666666555555555543
No 303
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.60 E-value=1.2 Score=51.14 Aligned_cols=11 Identities=36% Similarity=0.338 Sum_probs=4.3
Q ss_pred HHhcHHHHHHH
Q 001058 611 VSGDKREVELL 621 (1170)
Q Consensus 611 vsaLKrEIEsL 621 (1170)
|.+++++-+.|
T Consensus 86 l~~l~keKe~L 96 (310)
T PF09755_consen 86 LQQLKKEKETL 96 (310)
T ss_pred HHHHHHHHHHH
Confidence 33334443333
No 304
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=95.59 E-value=2.1 Score=46.46 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=39.8
Q ss_pred HHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHhcHHHHH
Q 001058 555 LNAKLKEAT-EADKKVEELEKEILTSREKIQFCSTKMQELI---LYKSRCDNRLNEITERVSGDKREVE 619 (1170)
Q Consensus 555 LnserqEAE-EaqKKL~ELEaEI~~lreEIE~lrtQMQELq---m~kqR~edELneI~eEvsaLKrEIE 619 (1170)
+..++++.. .|.+++.+|+.++..-..++..++.+++.|. .-+...+.+|..+.+++...+.+..
T Consensus 34 i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~ 102 (206)
T PF14988_consen 34 IQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHA 102 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 3888888888888888888888888777554 3444444555555555544443333
No 305
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.59 E-value=0.38 Score=57.95 Aligned_cols=87 Identities=22% Similarity=0.205 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HH----------HHHHhcHHHHHHHHHHHHH
Q 001058 559 LKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNE-IT----------ERVSGDKREVELLAKKYEE 627 (1170)
Q Consensus 559 rqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELne-I~----------eEvsaLKrEIEsLrqKYEE 627 (1170)
+++..+++..+.-++......+.++..|+.+.+-+...+.+.-+.|.+ .. .++..++.|.+.++.++..
T Consensus 213 l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~ 292 (511)
T PF09787_consen 213 LRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQL 292 (511)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHH
Confidence 334455556666666666667777777775444222222222222222 00 1234555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001058 628 KYKQSGDVASKLTLEEAT 645 (1170)
Q Consensus 628 ~~KQISELqsqIA~LEAe 645 (1170)
+..||.+|...++++|.+
T Consensus 293 l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 293 LERQIEQLRAELQDLEAQ 310 (511)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555443
No 306
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.58 E-value=1 Score=49.15 Aligned_cols=53 Identities=9% Similarity=0.253 Sum_probs=22.4
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 610 RVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 610 EvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
++......+..++..+.+...++..++.....+..+|..++.++.++...|..
T Consensus 86 ~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 86 RLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333333333333444444444444444444444444444444443
No 307
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.57 E-value=1.2 Score=53.84 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCCccHHHHHHHHHHHHHHH
Q 001058 645 TFRDIQEKKMELYQAILKME--GESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 645 eLQDIQeQ~~eLqqALqkLE--~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
-|+=+++++...++.+.+++ ..++...|+++|+.++..-.+|
T Consensus 141 ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i 184 (475)
T PRK10361 141 LLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQM 184 (475)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333 1223367777777666444444
No 308
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=95.56 E-value=0.57 Score=58.59 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 577 LTSREKIQFCSTKMQELILYKSRCDNRLNEITE-RVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQ 650 (1170)
Q Consensus 577 ~~lreEIE~lrtQMQELqm~kqR~edELneI~e-EvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQ 650 (1170)
...+++++.+++++++|....-+|.. ++.-. ..+.++.+.-.++.++|++.|++.++.++|+.+|++|.+-+
T Consensus 964 aE~daeLe~~~ael~eleqk~le~~e--Dea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQek 1036 (1424)
T KOG4572|consen 964 AEIDAELEKEFAELIELEQKALECKE--DEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEK 1036 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556666677777776665555433 11111 11233333334566666666666666666666666554433
No 309
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.53 E-value=0.73 Score=57.09 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 001058 571 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY----KQSGDVASKLTLEEATF 646 (1170)
Q Consensus 571 ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~----KQISELqsqIA~LEAeL 646 (1170)
.++..+..++.+.+...++++.|...+..+.++|+.+.+++..-..|++....+-|+.. -++.....+|..+|..+
T Consensus 517 k~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~ 596 (786)
T PF05483_consen 517 KQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKC 596 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHH
Confidence 34455566666666777788888888888899999999888877777775332322221 22333334444455555
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001058 647 RDIQEKKMELYQAILKME 664 (1170)
Q Consensus 647 QDIQeQ~~eLqqALqkLE 664 (1170)
..++.|+..-...|.+|.
T Consensus 597 ~~LrKqvEnk~K~ieeLq 614 (786)
T PF05483_consen 597 NNLRKQVENKNKNIEELQ 614 (786)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 555555544444444443
No 310
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=95.52 E-value=0.22 Score=60.10 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEIL-------TSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 637 (1170)
Q Consensus 565 aqKKL~ELEaEI~-------~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqs 637 (1170)
+.++|.+|..+++ ....+-+-+.+++......+..+.++|.+...++..++.|++..+.-|| .||+.+.+
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE---~QLs~MSE 494 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE---EQLSMMSE 494 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHH
Confidence 3444555544443 3333444444555555566667788899999999999999999999998 88888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001058 638 KLTLEEATFRDIQEKKMELY 657 (1170)
Q Consensus 638 qIA~LEAeLQDIQeQ~~eLq 657 (1170)
.|+.+..+|...+++|+.|.
T Consensus 495 HLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 495 HLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888887776
No 311
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.52 E-value=0.41 Score=60.56 Aligned_cols=46 Identities=4% Similarity=0.126 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHH
Q 001058 643 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVK 688 (1170)
Q Consensus 643 EAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEK 688 (1170)
+..|++++++.+++-.+|.++.........++++++++.+|+++.+
T Consensus 576 ~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~ 621 (782)
T PRK00409 576 QQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANE 621 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhh
Confidence 3445555555555555554432111112234556666666666544
No 312
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.51 E-value=1.1 Score=55.91 Aligned_cols=115 Identities=22% Similarity=0.252 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhHHHHHH-HHHHHHHH----HHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHHHhcH
Q 001058 548 SKEEQESLNAKLKEATE-ADKKVEEL----EKEILTSREKIQFCSTKMQ-------ELILYKSRCDNRLNEITERVSGDK 615 (1170)
Q Consensus 548 s~EEe~~LnserqEAEE-aqKKL~EL----EaEI~~lreEIE~lrtQMQ-------ELqm~kqR~edELneI~eEvsaLK 615 (1170)
-.+|++++-.+++-... ++.+|.+. +++++.+.+....|...++ ++..+..-+...|.+..++...++
T Consensus 483 LReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR 562 (739)
T PF07111_consen 483 LREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELR 562 (739)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567777666553332 44444444 3334444444444444443 333333333344455555556777
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 616 REVELLAKKYEE-KYKQSGDVAS----KLTLEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 616 rEIEsLrqKYEE-~~KQISELqs----qIA~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
+|+...+..|+. ++..|++|+. +|+++|..|..++.++..---+|-.
T Consensus 563 ~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ 614 (739)
T PF07111_consen 563 RELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQ 614 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777764 3345566654 4666777777777776554444433
No 313
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.51 E-value=0.26 Score=57.88 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVEL 620 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEs 620 (1170)
..++..++.+|...++.+-+..+.+|++++...+|++.|+..+.+++-+.+.+.+.
T Consensus 25 ~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~ 80 (459)
T KOG0288|consen 25 CEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKT 80 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888888888999999999888888888888777766554444433
No 314
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=95.50 E-value=0.81 Score=52.27 Aligned_cols=86 Identities=10% Similarity=0.145 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK-------L 639 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsq-------I 639 (1170)
..+.-++.|+.+.+++++..+.++++ +++++.. + ....+....-..+..|+.++.+...++.++... +
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~---fr~~~~~-~-d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v 244 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLK---YQIKNKV-F-DPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQV 244 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCC-c-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCch
Confidence 44455566666666666655555444 3333222 1 122222233334445555555555555555433 3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001058 640 TLEEATFRDIQEKKMELY 657 (1170)
Q Consensus 640 A~LEAeLQDIQeQ~~eLq 657 (1170)
..++++++.+++|+.+..
T Consensus 245 ~~l~~~i~~l~~~i~~e~ 262 (362)
T TIGR01010 245 PSLQARIKSLRKQIDEQR 262 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 315
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.48 E-value=1.6 Score=53.05 Aligned_cols=8 Identities=38% Similarity=0.393 Sum_probs=4.2
Q ss_pred Cccccccc
Q 001058 716 GIQEGTAD 723 (1170)
Q Consensus 716 ~~qe~a~~ 723 (1170)
+||--|.+
T Consensus 191 aiqr~a~~ 198 (514)
T TIGR03319 191 AIQRYAGD 198 (514)
T ss_pred HHHhccch
Confidence 55655543
No 316
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.48 E-value=1.7 Score=52.41 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 001058 671 TLQQHADHIQNELEELVKI 689 (1170)
Q Consensus 671 ~LQeRIkqiQ~kLeELEKa 689 (1170)
=|+++|+.++.+++++++.
T Consensus 144 Pl~e~l~~f~~~v~~~~~~ 162 (475)
T PRK10361 144 PLREQLDGFRRQVQDSFGK 162 (475)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766543
No 317
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=95.46 E-value=0.35 Score=60.27 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 632 SGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 632 ISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
|..|+.+++.++..+.++..++..+...++
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~ 272 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQ 272 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 318
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=95.45 E-value=0.75 Score=53.56 Aligned_cols=24 Identities=4% Similarity=0.156 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 674 QHADHIQNELEELVKILNDRCKQY 697 (1170)
Q Consensus 674 eRIkqiQ~kLeELEKaL~Earqq~ 697 (1170)
+++.+++.+|.+++..+.++..++
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766666666654
No 319
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=95.44 E-value=0.24 Score=55.77 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHHHHHHH
Q 001058 632 SGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES--GDGTLQQHADHIQNELEELVKILN 691 (1170)
Q Consensus 632 ISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~--edA~LQeRIkqiQ~kLeELEKaL~ 691 (1170)
|-.++.|| +|+.++++|.+|++.+..+...- -|.-+|+.-.+||-+=..||-.|+
T Consensus 110 CHRVEAQL-----ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 110 CHRVEAQL-----ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence 34444554 45555566666666666544211 145677777888866667776666
No 320
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=95.44 E-value=0.8 Score=45.82 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 639 LTLEEATFRDIQEKKMELYQAILKMEGESGD---GTLQQHADHIQNELEELVKILNDRCKQ 696 (1170)
Q Consensus 639 IA~LEAeLQDIQeQ~~eLqqALqkLE~r~ed---A~LQeRIkqiQ~kLeELEKaL~Earqq 696 (1170)
+..++.+|...+.++..+......+...... ..++.+|..++...+.|...+.++++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~ 208 (213)
T cd00176 148 HKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKK 208 (213)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666777777777766644433 457888888888888887777666654
No 321
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=0.54 Score=58.28 Aligned_cols=125 Identities=19% Similarity=0.211 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHH------------
Q 001058 561 EATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK------------ 628 (1170)
Q Consensus 561 EAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~------------ 628 (1170)
.+++...|+.++...+..+.++...|.++.-.|....-++-+.+..+..++-.+.++.+.++.=|+.+
T Consensus 378 ~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~ 457 (716)
T KOG4593|consen 378 GITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASME 457 (716)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhH
Confidence 44567788888888888888887888887777666555555545555444444444444443333333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHH
Q 001058 629 --YKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 687 (1170)
Q Consensus 629 --~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELE 687 (1170)
..+|..-.+.+..+|.++.|++.++.+..+.+.- ++.+...|.+.|.+|-.+|+.|+
T Consensus 458 ~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~--qr~e~~~~~e~i~~~~ke~~~Le 516 (716)
T KOG4593|consen 458 ELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLF--QREESELLREKIEQYLKELELLE 516 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhhHHHHHHHHHHHHH
Confidence 3444444455666777888888777766666654 56666777888999999999774
No 322
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.41 E-value=1.4 Score=50.47 Aligned_cols=62 Identities=18% Similarity=0.264 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 001058 630 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDR 693 (1170)
Q Consensus 630 KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Ea 693 (1170)
+++..+..+|..+|-+-...+.++..-..+|.+|...+ ..+.+++..++.+++.|++.+...
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer--~~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEER--QKLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777888888999999999999999888666 678899999999999998776543
No 323
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.40 E-value=1.1 Score=57.53 Aligned_cols=6 Identities=0% Similarity=0.019 Sum_probs=2.7
Q ss_pred HHHHHH
Q 001058 414 QAYNLF 419 (1170)
Q Consensus 414 ELr~~f 419 (1170)
++..+|
T Consensus 144 e~~~fl 149 (908)
T COG0419 144 EFDAFL 149 (908)
T ss_pred hHHHHH
Confidence 444444
No 324
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=95.40 E-value=1.2 Score=41.56 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHH
Q 001058 591 QELILYKSRCDNRLNEITERVSGDKREVELLAKKY 625 (1170)
Q Consensus 591 QELqm~kqR~edELneI~eEvsaLKrEIEsLrqKY 625 (1170)
.....+...+...+..+..++..++.+++.++..+
T Consensus 48 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l 82 (123)
T PF02050_consen 48 RNYQRYISALEQAIQQQQQELERLEQEVEQAREEL 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433444333334444444333333
No 325
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.38 E-value=0.0043 Score=76.65 Aligned_cols=20 Identities=35% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHhcHHHHHHHHHHHHHH
Q 001058 609 ERVSGDKREVELLAKKYEEK 628 (1170)
Q Consensus 609 eEvsaLKrEIEsLrqKYEE~ 628 (1170)
.++.++..+++..++|+++.
T Consensus 308 ~r~~klE~~ve~YKkKLed~ 327 (713)
T PF05622_consen 308 DRADKLENEVEKYKKKLEDL 327 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443
No 326
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=95.38 E-value=0.34 Score=48.53 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELI 594 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELq 594 (1170)
+..++..++.++..+..++..++..+.++.
T Consensus 11 l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~ 40 (140)
T PRK03947 11 LAAQLQALQAQIEALQQQLEELQASINELD 40 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554444443
No 327
>PRK00106 hypothetical protein; Provisional
Probab=95.31 E-value=2.6 Score=51.60 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=4.6
Q ss_pred Ccccccccc
Q 001058 716 GIQEGTADW 724 (1170)
Q Consensus 716 ~~qe~a~~w 724 (1170)
+||--|.+.
T Consensus 212 aiqr~a~~~ 220 (535)
T PRK00106 212 AMQRLAGEY 220 (535)
T ss_pred HHHHhcchh
Confidence 455555543
No 328
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=95.31 E-value=0.96 Score=53.60 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 001058 392 VQKYTKVFVQVDIDRDGKITGEQAYNLF 419 (1170)
Q Consensus 392 kqeyreaF~~fDkDgDG~ISgdELr~~f 419 (1170)
.+.++.|-+.+|.|.+|-|+.+|--.||
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFl 94 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFL 94 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHH
Confidence 3568888999999999999999988888
No 329
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.66 Score=48.13 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCD 601 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~e 601 (1170)
..+.+|-++++-++.+++.++.++..|.+.+..+.
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~ 40 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQ 40 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666665555443
No 330
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=95.24 E-value=0.16 Score=47.74 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=54.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEE 685 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeE 685 (1170)
.+|.|++.+-+++.....+..+++.+|+..-.+++.|++++-+|+.+-.++...| +++|.+++.+|+.
T Consensus 8 ~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y-----EeEI~rLr~eLe~ 75 (79)
T PF08581_consen 8 AIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY-----EEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 4677777777777666677778888888888899999999999999999988888 4558888887764
No 331
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=95.24 E-value=0.78 Score=50.46 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKEILTSREKI 583 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEI 583 (1170)
.-|.+++.++.+.++.+
T Consensus 31 Q~ird~~~~l~~ar~~~ 47 (225)
T COG1842 31 QAIRDMESELAKARQAL 47 (225)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 332
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.23 E-value=2.1 Score=46.51 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=22.1
Q ss_pred HhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 597 KSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTL 641 (1170)
Q Consensus 597 kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~ 641 (1170)
....+.+++.+..+++..|+-.+..-.||+++...+.=++..|.+
T Consensus 55 ~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~ 99 (205)
T KOG1003|consen 55 AQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELER 99 (205)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333333444444444555555555556666665555444444333
No 333
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=95.22 E-value=0.36 Score=47.78 Aligned_cols=83 Identities=18% Similarity=0.078 Sum_probs=33.9
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----ccHHHHHHHHHHHHHH
Q 001058 611 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD-----GTLQQHADHIQNELEE 685 (1170)
Q Consensus 611 vsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ed-----A~LQeRIkqiQ~kLeE 685 (1170)
++.+..++|.+..-.+++.+|-.+|...++.|+++...+..++.+|++.|.++...-+. ..|+.|+...+.+...
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~ 97 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAI 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33344444444333344444444444444444444444444444444444332211100 1344444455555555
Q ss_pred HHHHHHHH
Q 001058 686 LVKILNDR 693 (1170)
Q Consensus 686 LEKaL~Ea 693 (1170)
||=.|.|+
T Consensus 98 lel~l~e~ 105 (107)
T PF09304_consen 98 LELKLAEA 105 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 55444444
No 334
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.22 E-value=1 Score=58.77 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001058 673 QQHADHIQNELEELVKILNDRCKQYGL 699 (1170)
Q Consensus 673 QeRIkqiQ~kLeELEKaL~Earqq~GL 699 (1170)
.+.+...+.++..+++.+.+.+..+|+
T Consensus 737 ~~~~~~~~~~~~~~~~~~~~~L~~~~f 763 (1047)
T PRK10246 737 QQQDVLEAQRLQKAQAQFDTALQASVF 763 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333444444444444444444444443
No 335
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=95.22 E-value=0.44 Score=56.33 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 644 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEA 644 (1170)
.+.-++.|.+|+....++++.|++=++.|..+.... +...+..++.+++.|-++|.++++++.++-.+|...|.++|.
T Consensus 141 ~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~ 218 (447)
T KOG2751|consen 141 MDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEF 218 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888888888888888777766554432 235566677778888888888887777777777777777766
Q ss_pred HHHHHHHHHHHHHHHHHH-----HhCCCCCccHHHHHHHHHHHHHHH
Q 001058 645 TFRDIQEKKMELYQAILK-----MEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 645 eLQDIQeQ~~eLqqALqk-----LE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
+-..+-++..+..+.+-. ++.+.+-.+|+-+++=.+.+|+.|
T Consensus 219 ~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL 265 (447)
T KOG2751|consen 219 KAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKL 265 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 555555555555555543 223333344444444444444444
No 336
>PRK12705 hypothetical protein; Provisional
Probab=95.21 E-value=1.5 Score=53.25 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCccc---CccccccccCCcccCccc
Q 001058 688 KILNDRCKQYGLRA---KPTLLVELPFGWQPGIQE 719 (1170)
Q Consensus 688 KaL~Earqq~GL~a---K~~~~vElp~gw~~~~qe 719 (1170)
+.+..+.|+|.-.. +-...|.||-.|+.|.=-
T Consensus 180 ~ii~~aiqr~a~~~~~e~tvs~v~lp~demkGriI 214 (508)
T PRK12705 180 NILAQAMQRIASETASDLSVSVVPIPSDAMKGRII 214 (508)
T ss_pred HHHHHHHHHhccchhhhheeeeeecCChHhhcccc
Confidence 44556666665332 444669999988876533
No 337
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.19 E-value=1.3 Score=55.35 Aligned_cols=44 Identities=20% Similarity=0.616 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCcccCccccccccCCcccCccccccccccchhcccccCcc
Q 001058 687 VKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWDEDWDKLEDEGFT 737 (1170)
Q Consensus 687 EKaL~Earqq~GL~aK~~~~vElp~gw~~~~qe~a~~w~edwd~~~d~gf~ 737 (1170)
-..+...|+-+|+++. .|||+=+ -||-.+++|.---..+ =-||.
T Consensus 450 l~vR~~LC~~L~v~~~-----~mPFAGE-LI~~~~~~WE~~~qRi-L~GF~ 493 (1104)
T COG4913 450 LQVRENLCQDLGVSPR-----DMPFAGE-LIDPNNAEWEPVVQRI-LGGFA 493 (1104)
T ss_pred HHHHHHHHHHcCCChh-----hCCcccc-ccCCCcccchHHHHHH-hhhch
Confidence 3556778999999875 5899876 7888999997643444 45665
No 338
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=95.17 E-value=0.29 Score=56.31 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCccccccccCCcccCcccccccccc
Q 001058 676 ADHIQNELEELVKILNDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWDE 726 (1170)
Q Consensus 676 IkqiQ~kLeELEKaL~Earqq~GL~aK~~~~vElp~gw~~~~qe~a~~w~e 726 (1170)
.+.|+.+|+.|.+.|.++.+. +...|..+.++=--|..|...+-++|-|
T Consensus 114 ~~~y~~~~~~l~~~l~~~l~~--~~~~y~~~d~~q~dw~~G~~~a~~~y~d 162 (332)
T TIGR01541 114 SDLYKEQLAAIKAALNEALAE--LHAYYAAEDALQGDWLAGARSGLADYGE 162 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345555666555555555443 3445556666666777777776666654
No 339
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=95.16 E-value=0.56 Score=52.66 Aligned_cols=55 Identities=9% Similarity=0.015 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 639 LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQY 697 (1170)
Q Consensus 639 IA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~ 697 (1170)
+...+.+++.++.++..+++.|..+.... .+.++..++.+|+.++..+.+++.++
T Consensus 147 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~l~~a~~~l 201 (331)
T PRK03598 147 LENARSSRDQAQATLKSAQDKLSQYREGN----RPQDIAQAKASLAQAQAALAQAELNL 201 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666665544322 34567777778887777666665543
No 340
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.13 E-value=0.97 Score=56.70 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=25.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 594 ILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 594 qm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
...++.++.|...|+-||.+.-.+++.++-++|+..|+-.-|.-.|..-+||+..+++=...|+....
T Consensus 486 ~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 486 LENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333
No 341
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.039 Score=62.89 Aligned_cols=65 Identities=28% Similarity=0.376 Sum_probs=53.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHH---cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHH
Q 001058 393 QKYTKVFVQVDIDRDGKITGEQAYNLFL---SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYLME 457 (1170)
Q Consensus 393 qeyreaF~~fDkDgDG~ISgdELr~~fL---GS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~LIe 457 (1170)
.+=++.|+..|.|+||.++.+|+..||- --.+..-+|++-+...|.|+||+|+++||+-=|+-.+
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 4556779999999999999999999982 2245566788999999999999999999996555444
No 342
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=95.10 E-value=1.1 Score=53.05 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 001058 589 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM----- 663 (1170)
Q Consensus 589 QMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkL----- 663 (1170)
++.+|.+....|.+.|.++..+..++..+-...-.+|-..+.|+=+.+..|+.+|++++=.+.|+.-|.+...-.
T Consensus 198 ~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I 277 (447)
T KOG2751|consen 198 QLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHI 277 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeE
Confidence 344444555555554444443333333333333444444455555666778888888888888888777766531
Q ss_pred ------------h-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccc-----------------cccccCCc
Q 001058 664 ------------E-GESGDGTLQQHADHIQNELEELVKILNDRCKQYGLRAKPTL-----------------LVELPFGW 713 (1170)
Q Consensus 664 ------------E-~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~GL~aK~~~-----------------~vElp~gw 713 (1170)
. ++. ....++-..|+.-+.++.=.|.-.|+++||..-.-. .+|||.-+
T Consensus 278 ~~~G~fgtIN~FRLG~l--p~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSyI~~~~~~~~~el~l~~ 355 (447)
T KOG2751|consen 278 WHDGEFGTINNFRLGRL--PSVPVEWDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSYIKKRMVNLPYELPLFQ 355 (447)
T ss_pred eecccccccccceeccc--cCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchhHHHHhccCCCccchhhc
Confidence 1 222 233567789999999999999999998887652111 24555443
Q ss_pred ccCccccccccccchhcccccCcchhhhhhhccc
Q 001058 714 QPGIQEGTADWDEDWDKLEDEGFTFVKELTLEVQ 747 (1170)
Q Consensus 714 ~~~~qe~a~~w~edwd~~~d~gf~~~~~~~~~v~ 747 (1170)
- ++--.-|+.-+|+=.-.=.-.+++++..+.
T Consensus 356 s---gg~~~f~~tkfD~amvafLd~L~qf~~e~~ 386 (447)
T KOG2751|consen 356 S---GGLKFFWSTKFDKAMVAFLDCLKQFADELE 386 (447)
T ss_pred C---CCceeeeccccCHHHHHHHHHHHHHHHHHH
Confidence 3 344567887555421111225566666665
No 343
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.09 E-value=2 Score=56.10 Aligned_cols=31 Identities=13% Similarity=-0.056 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 631 QSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 631 QISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
++..|+..|...+..++.++..+.+++.+|.
T Consensus 778 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~ 808 (1047)
T PRK10246 778 TLTQLEQLKQNLENQRQQAQTLVTQTAQALA 808 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555544444
No 344
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.07 E-value=0.56 Score=57.48 Aligned_cols=119 Identities=23% Similarity=0.283 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 568 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 647 (1170)
Q Consensus 568 KL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQ 647 (1170)
||.+||.-|...++++......+|+--+..+.++ .++-.|=.|+-+|+-+|--+.|+-.+-+.++...|..+|
T Consensus 140 KIrDLE~cie~kr~kLnatEEmLQqellsrtsLE-------TqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~q 212 (861)
T KOG1899|consen 140 KIRDLETCIEEKRNKLNATEEMLQQELLSRTSLE-------TQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQ 212 (861)
T ss_pred hHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHH-------HHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHH
Confidence 5556666665555555544333332111112111 111122233333333333333333444444444444454
Q ss_pred HHH-HHHHHHHHHHH----HHh-CCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 001058 648 DIQ-EKKMELYQAIL----KME-GESGDGTLQQHADHIQNELEELVKILNDR 693 (1170)
Q Consensus 648 DIQ-eQ~~eLqqALq----kLE-~r~edA~LQeRIkqiQ~kLeELEKaL~Ea 693 (1170)
+|. .+..+|.++-. ++. -..+.+.|+|....-+.+++.|-..|-++
T Consensus 213 evn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~ 264 (861)
T KOG1899|consen 213 EVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQR 264 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHH
Confidence 443 22222222221 222 34466777777766666665554333333
No 345
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=95.05 E-value=0.37 Score=45.24 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 621 LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKK 653 (1170)
Q Consensus 621 LrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~ 653 (1170)
|+.+++....+|..|+.++..++.++.+++.++
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443
No 346
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=95.03 E-value=1.3 Score=50.71 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=23.3
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 605 NEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 647 (1170)
Q Consensus 605 neI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQ 647 (1170)
..+..+++++.++++..+.++++.+..+++++..|+.++.+.-
T Consensus 130 ~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 130 ADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555544333
No 347
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.03 E-value=0.054 Score=57.71 Aligned_cols=67 Identities=22% Similarity=0.408 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHhhCCC-CCCcccHHHHHHHH-HcCCCCHHHHHHHHHHhCCCCCCC-cCHHHHHHHHHH
Q 001058 386 KMTHSEVQKYTKVFVQVDID-RDGKITGEQAYNLF-LSWRLPREVLKQVWDLSDQDNDGM-LSLKEFCTALYL 455 (1170)
Q Consensus 386 ~LSpEEkqeyreaF~~fDkD-gDG~ISgdELr~~f-LGS~LpeeeL~qIWdLaD~D~DGk-LdfdEF~iAM~L 455 (1170)
.++..|+..+-..|.++|.+ ++|+|+.+|+..++ +..++ -..+|++.+|.+++|. |+|++|+.++.+
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~ 95 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSV 95 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhh
Confidence 47889999999999999999 99999999999998 33333 3568899999999999 999999954443
No 348
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=95.03 E-value=1.2 Score=48.23 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=56.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHHHHHH
Q 001058 620 LLAKKYEEKY---KQSGDVASKLTLEEATF----RDIQEKKMELYQAILKMEGESGD--GTLQQHADHIQNELEELVKIL 690 (1170)
Q Consensus 620 sLrqKYEE~~---KQISELqsqIA~LEAeL----QDIQeQ~~eLqqALqkLE~r~ed--A~LQeRIkqiQ~kLeELEKaL 690 (1170)
.|-.||.+++ ++..+|+.+|..+|.+| .+...++..+++.|..++-+... ...+.+...|+..|.+||-.|
T Consensus 69 kL~~KY~~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L 148 (196)
T PF15272_consen 69 KLYSKYQELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNERERERIAYESRIADLERQL 148 (196)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4666666665 45566666666666655 22333455555555555533311 112344557889999999988
Q ss_pred HHHHHHhCcccCccccccccCCcccCccccccccccchh
Q 001058 691 NDRCKQYGLRAKPTLLVELPFGWQPGIQEGTADWDEDWD 729 (1170)
Q Consensus 691 ~Earqq~GL~aK~~~~vElp~gw~~~~qe~a~~w~edwd 729 (1170)
..+..-.+=.. .+.--+..+..+--++.+ -|-.|++
T Consensus 149 ~~~n~~~~~~~--~~s~~~s~~~~~~~~~~~-~~~~d~n 184 (196)
T PF15272_consen 149 NSRNNSSNDNY--VSSNSYSTSSYSIPYETN-SPLSDYN 184 (196)
T ss_pred HHhcccCCCCC--ccccccCCCcCCcchhcc-ccccccc
Confidence 85444332111 122233344444444555 4544444
No 349
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.00 E-value=0.71 Score=52.28 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=3.0
Q ss_pred HhCccc
Q 001058 696 QYGLRA 701 (1170)
Q Consensus 696 q~GL~a 701 (1170)
++-|+|
T Consensus 208 ~~~I~A 213 (346)
T PRK10476 208 DTTVRA 213 (346)
T ss_pred cCEEEC
Confidence 444555
No 350
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=94.99 E-value=3.9 Score=43.93 Aligned_cols=10 Identities=40% Similarity=0.544 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001058 567 KKVEELEKEI 576 (1170)
Q Consensus 567 KKL~ELEaEI 576 (1170)
..+.+.+.+.
T Consensus 38 ~i~~~A~~eA 47 (201)
T PF12072_consen 38 QILEEAEREA 47 (201)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 351
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=94.97 E-value=0.79 Score=55.55 Aligned_cols=32 Identities=13% Similarity=0.322 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 633 GDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 633 SELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
++|+..++.++.+|.+|+.++.+++..|..|+
T Consensus 378 S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lr 409 (570)
T COG4477 378 SELQDNLEEIEKALTDIEDEQEKVQEHLTSLR 409 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555566666666666666666666666654
No 352
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=2.2 Score=54.39 Aligned_cols=55 Identities=15% Similarity=0.302 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 001058 630 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE 684 (1170)
Q Consensus 630 KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLe 684 (1170)
+++..|+..|..++.++-+++.|+..+..+|+.||.+..-+.|.++-.....+|+
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~ 828 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLE 828 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 5667777778888888888899999999999999977766655554444333333
No 353
>PTZ00464 SNF-7-like protein; Provisional
Probab=94.92 E-value=2.2 Score=46.60 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKI 583 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEI 583 (1170)
+++|+..++.|+...++.+
T Consensus 30 l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 30 VDARINKIDAELMKLKEQI 48 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566655655555554444
No 354
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=94.91 E-value=1.9 Score=49.66 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=13.6
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 656 LYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 656 LqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
+..+|.++.++. ..|++++..|-.+++|+
T Consensus 206 ak~~~e~~~~~e--~qlK~ql~lY~aKyeef 234 (391)
T KOG1850|consen 206 AKIMLEEMKQVE--GQLKEQLALYMAKYEEF 234 (391)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 333444433333 44555555555555544
No 355
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=94.90 E-value=2.8 Score=39.63 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 635 VASKLTLEEATFRDIQEKKMELYQA 659 (1170)
Q Consensus 635 LqsqIA~LEAeLQDIQeQ~~eLqqA 659 (1170)
|..++..++..+..++.-+..++..
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~~e~~ 101 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINFTEEA 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433333333
No 356
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.88 E-value=0.22 Score=62.09 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC----------ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 643 EATFRDIQEKKMELYQAILKMEGESGD----------GTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 643 EAeLQDIQeQ~~eLqqALqkLE~r~ed----------A~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
..+|..+|++++.|.+.|..++.++.. ...+.++.+++.+|+.++|..+-..+
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLke 627 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKE 627 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888777744421 23455677777777777655554444
No 357
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.87 E-value=0.84 Score=52.85 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001058 643 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQYGL 699 (1170)
Q Consensus 643 EAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~GL 699 (1170)
|..|.....+...|.+++...+.+. ..|++++.-++.-...||.-++-.|-...|
T Consensus 244 ek~i~EfdiEre~LRAel~ree~r~--K~lKeEmeSLkeiVkdlEA~hQh~~pNeqL 298 (561)
T KOG1103|consen 244 EKLIEEFDIEREFLRAELEREEKRQ--KMLKEEMESLKEIVKDLEADHQHLRPNEQL 298 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhhhhhcCccccc
Confidence 4455666666666777777666555 567777777777777777766666654444
No 358
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.86 E-value=0.0074 Score=74.59 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTL---EEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~---LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
.+|++++.|+.+......++..|+.++.. ++.+|...+.++.+|+..+.+...+. ..|+.++.+++.+++.|
T Consensus 329 ~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~--~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 329 DLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRA--DKLEFENKQLEEKLEAL 403 (713)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44444444444433333333333333322 23344444444444444444433222 23333444444444433
No 359
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=94.85 E-value=0.52 Score=58.83 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=43.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Q 001058 592 ELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGT 671 (1170)
Q Consensus 592 ELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~ 671 (1170)
++......++.....+.+++..++.+++.|++++.++..++..+.+.+++.-..+...+.++..+...|.+-+ .
T Consensus 224 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~--~---- 297 (670)
T KOG0239|consen 224 DLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK--K---- 297 (670)
T ss_pred hHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----
Confidence 3444444444444444444455555555555555444444444444433333333222333333333332211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 672 LQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 672 LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
=++.-+++.++|-||+-.++-.|.
T Consensus 298 e~~~r~kL~N~i~eLkGnIRV~CR 321 (670)
T KOG0239|consen 298 EKEERRKLHNEILELKGNIRVFCR 321 (670)
T ss_pred HHHHHHHHHHHHHHhhcCceEEEE
Confidence 123345566666677666655555
No 360
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=1.4 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=13.1
Q ss_pred cHHHHHHHHH----HHHHHHHHHHHHHHH
Q 001058 671 TLQQHADHIQ----NELEELVKILNDRCK 695 (1170)
Q Consensus 671 ~LQeRIkqiQ----~kLeELEKaL~Earq 695 (1170)
.+-+||++|- ++=.++.|.+.|.|+
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etre 414 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRE 414 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555543 333355666666665
No 361
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=94.84 E-value=0.78 Score=55.99 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Q 001058 603 RLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEE-----ATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 603 ELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LE-----AeLQDIQeQ~~eLqqALqkLE 664 (1170)
+|....++++.+++|++..+.-++ ..++|.++...|...+ ..+-++-..+.+++..|..+.
T Consensus 77 ~l~~a~~e~~~L~~eL~~~~~~l~-~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~ 142 (593)
T PF06248_consen 77 QLRDAAEELQELKRELEENEQLLE-VLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLK 142 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 344444444555555554433332 2234444444444332 345555566666666666653
No 362
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.82 E-value=1.8 Score=56.86 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001058 671 TLQQHADHIQNELEELVKILNDRCKQYG 698 (1170)
Q Consensus 671 ~LQeRIkqiQ~kLeELEKaL~Earqq~G 698 (1170)
.|.++..++.+.|+.+.+.++-.++|-.
T Consensus 283 ~l~~~~~~~~~~l~~~~q~~~~i~eQi~ 310 (1109)
T PRK10929 283 LIASQQRQAASQTLQVRQALNTLREQSQ 310 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666555555555443
No 363
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=94.80 E-value=1.1 Score=54.59 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---ccHHHHHHHHHHHHHHH----HHHHHHHH
Q 001058 622 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD---GTLQQHADHIQNELEEL----VKILNDRC 694 (1170)
Q Consensus 622 rqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ed---A~LQeRIkqiQ~kLeEL----EKaL~Ear 694 (1170)
+..|+..+.+..++++-++..+.+..++-..+.+|-..+.....+.+. ..|+.+|...+...+.. ..++.+.+
T Consensus 462 ~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n~~sel~sl~~~~~~~~~r~~~~~~~l~ 541 (607)
T KOG0240|consen 462 RRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQNLKSELQSLQEPSEHQSKRITELLSELR 541 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhHHHHHhhhhcccchhHHHHHHHHHHH
Confidence 566666666666666644444444444444444444444433322221 22344444444444322 36677778
Q ss_pred HHhCcccCcccccccc
Q 001058 695 KQYGLRAKPTLLVELP 710 (1170)
Q Consensus 695 qq~GL~aK~~~~vElp 710 (1170)
+.+|..-+...+-+-+
T Consensus 542 ~~~~~~~~~~~~~~~~ 557 (607)
T KOG0240|consen 542 KDLGEIGWKIGTSSEK 557 (607)
T ss_pred hhhccccccccCCccc
Confidence 8888766444443333
No 364
>PF13166 AAA_13: AAA domain
Probab=94.78 E-value=1.2 Score=54.74 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=8.7
Q ss_pred CCCCcCHHHHHHHHHH
Q 001058 440 NDGMLSLKEFCTALYL 455 (1170)
Q Consensus 440 ~DGkLdfdEF~iAM~L 455 (1170)
..-.++.++....+..
T Consensus 177 ~~~~~~~~~l~~~~~~ 192 (712)
T PF13166_consen 177 ESSLLSLEELEERIKI 192 (712)
T ss_pred cccccCHHHHHHHHHH
Confidence 4456677766643333
No 365
>PRK10869 recombination and repair protein; Provisional
Probab=94.78 E-value=0.47 Score=57.76 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=33.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 554 SLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYK 597 (1170)
Q Consensus 554 ~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~k 597 (1170)
..+...++..++.+++.+++.+..+..+++++++.|+.||..-+
T Consensus 158 ~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~ 201 (553)
T PRK10869 158 EMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFA 201 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444445556778888888888888899999999999877544
No 366
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.74 E-value=2.7 Score=45.77 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001058 641 LEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 641 ~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
.|+.+++.+.+-+..|...-++
T Consensus 113 eLeEe~~~~~~nlk~l~~~ee~ 134 (205)
T KOG1003|consen 113 ELEEDLRILDSNLKSLSAKEEK 134 (205)
T ss_pred HHHHHHHHhHhHHHHHHHHHHH
Confidence 3344444444444444444443
No 367
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.72 E-value=0.95 Score=55.43 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=18.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhCcc
Q 001058 676 ADHIQNELE-ELVKILNDRCKQYGLR 700 (1170)
Q Consensus 676 IkqiQ~kLe-ELEKaL~Earqq~GL~ 700 (1170)
|-.+|.+.. +|++.+.+..|.++|.
T Consensus 365 Ls~~R~~~A~~L~~~v~~eL~~L~Me 390 (557)
T COG0497 365 LSAIRKKAAKELEKEVTAELKALAME 390 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455555544 8889999888888775
No 368
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=94.71 E-value=0.61 Score=54.99 Aligned_cols=16 Identities=13% Similarity=-0.024 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001058 642 EEATFRDIQEKKMELY 657 (1170)
Q Consensus 642 LEAeLQDIQeQ~~eLq 657 (1170)
++..|...|+++..|+
T Consensus 303 i~E~~Es~qtRisklE 318 (395)
T PF10267_consen 303 IWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 369
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.71 E-value=1.1 Score=51.62 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 630 KQSGDVASKLTLEEATFRDIQEKKMEL 656 (1170)
Q Consensus 630 KQISELqsqIA~LEAeLQDIQeQ~~eL 656 (1170)
.|+.++.+.+.+.|.+-+.+-.++++.
T Consensus 148 lqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 148 LQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 370
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=94.70 E-value=6.9 Score=42.54 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=13.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHH
Q 001058 393 QKYTKVFVQVDIDRDGKITGEQAYNLF 419 (1170)
Q Consensus 393 qeyreaF~~fDkDgDG~ISgdELr~~f 419 (1170)
+.|..++..++ +|.-..+++..+|
T Consensus 5 d~~~~l~~~~~---~g~~~~~~l~~f~ 28 (251)
T cd07653 5 DQFDNLEKHTQ---KGIDFLERYGKFV 28 (251)
T ss_pred hhhHHHHHHHH---HhHHHHHHHHHHH
Confidence 34555555554 4555566666665
No 371
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=94.70 E-value=1.4 Score=52.00 Aligned_cols=20 Identities=5% Similarity=0.258 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001058 645 TFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 645 eLQDIQeQ~~eLqqALqkLE 664 (1170)
+++-++.+.+.|.+.++.++
T Consensus 343 ~~~~l~~~~~~L~~~~~~l~ 362 (458)
T COG3206 343 ELALLEQQEAALEKELAQLK 362 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555444
No 372
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.67 E-value=0.18 Score=55.26 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 602 NRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 602 dELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
..|+++.++..+|..++++|+.+|++.+..++.|+-..+.||..++.+-.+...|..-+.+|+
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 334444444444555555555555544444444444444444444443333333444444443
No 373
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.67 E-value=2 Score=53.72 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 622 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 622 rqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
+.+.|....+|.+|.++|++..-.|.-.|.+--+-+++|++|+
T Consensus 382 e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALe 424 (1480)
T COG3096 382 EARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALE 424 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444445566777788888887777777777777778888776
No 374
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.65 E-value=0.059 Score=65.10 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=69.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH--cCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 001058 377 SSQSHVPWPKMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--SWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALY 454 (1170)
Q Consensus 377 ~~qsq~~Wp~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fL--GS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~ 454 (1170)
..+...+. .|++++...++..|..+|.|+.|+++.+++..+|. +-+.+++.+.++..++|.+.+|++...||...|.
T Consensus 578 ~~~~~~~i-~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 578 TSQMSIPI-KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred cccccccc-ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 33444555 79999999999999999999999999999999993 4589999999999999999999999999987665
Q ss_pred HHH
Q 001058 455 LME 457 (1170)
Q Consensus 455 LIe 457 (1170)
-+.
T Consensus 657 ~~~ 659 (680)
T KOG0042|consen 657 AIK 659 (680)
T ss_pred HHh
Confidence 544
No 375
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=94.63 E-value=0.22 Score=59.75 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 644 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEA 644 (1170)
++++|.+++.++..++++++-++.++.-|........ ..+...+......+++|.+-.+-...++.+|..++..++.
T Consensus 76 l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
T TIGR02231 76 LRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLT---EPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAER 152 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555555555443332221110 0010000001223334444433344555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 001058 645 TFRDIQEKKMELYQAILKMEG 665 (1170)
Q Consensus 645 eLQDIQeQ~~eLqqALqkLE~ 665 (1170)
+|+++++++..|+++|.++..
T Consensus 153 ~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 153 RIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 666666666666666666553
No 376
>COG5293 Predicted ATPase [General function prediction only]
Probab=94.62 E-value=0.7 Score=55.10 Aligned_cols=92 Identities=21% Similarity=0.171 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH----------HhCcccCccccccccCCc
Q 001058 644 ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK----------QYGLRAKPTLLVELPFGW 713 (1170)
Q Consensus 644 AeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earq----------q~GL~aK~~~~vElp~gw 713 (1170)
+++.+=-++......++.+ .|. ..||++|+.|+.+|.+++..+++.-+ ..|+--|++++.|-=..-
T Consensus 316 g~Vkk~~e~v~~F~r~~~e--~R~--~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~ 391 (591)
T COG5293 316 GQVKKDFEHVIAFNRAITE--ERH--DYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIAL 391 (591)
T ss_pred HHHHHhHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3444434444444555544 666 67899999999888888655555444 233334666664432222
Q ss_pred ccCccccccccccchhcccccCcchhhh
Q 001058 714 QPGIQEGTADWDEDWDKLEDEGFTFVKE 741 (1170)
Q Consensus 714 ~~~~qe~a~~w~edwd~~~d~gf~~~~~ 741 (1170)
.-.+-|-. ..-|+++|| ++-|.-++.
T Consensus 392 ~~elae~~-~rie~l~k~-~~~~~~i~~ 417 (591)
T COG5293 392 RGELAELE-YRIEPLRKL-HALDQYIGT 417 (591)
T ss_pred hhhHHHHH-HhhhHHHHH-HHHHHHHHH
Confidence 21111111 123467777 444444443
No 377
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.61 E-value=0.51 Score=56.02 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHH-------HHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCST--KMQELILYKSRCDNRLNEITERVSGDKREVELL-------AKKYEEKYKQSGDV 635 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrt--QMQELqm~kqR~edELneI~eEvsaLKrEIEsL-------rqKYEE~~KQISEL 635 (1170)
+..++.+-..++++.+++++.|+- ..+||..+..+..--+++- .....+++|+|++ +..++..+.|+-.|
T Consensus 257 A~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~-~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~L 335 (554)
T KOG4677|consen 257 ALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSP-DKSTASRKEFEETRVELPFSAEDSAHIQDQYTLL 335 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCC-CcchhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 557888888889888888887553 4567887777654323222 2233555666654 55666677778888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001058 636 ASKLTLEEATFRDIQEKKM 654 (1170)
Q Consensus 636 qsqIA~LEAeLQDIQeQ~~ 654 (1170)
+++|.++||+..+++.+..
T Consensus 336 rs~~~d~EAq~r~l~s~~~ 354 (554)
T KOG4677|consen 336 RSQIIDIEAQDRHLESAGQ 354 (554)
T ss_pred HHHHHHHHHHHHhHHHHhH
Confidence 8888888887777766543
No 378
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=94.60 E-value=0.53 Score=45.69 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 630 KQSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 630 KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
+.+..|+..+..++.++..+++++..|+..++
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444
No 379
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=94.59 E-value=0.96 Score=55.19 Aligned_cols=86 Identities=16% Similarity=0.298 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH-------HHHHH
Q 001058 614 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQN-------ELEEL 686 (1170)
Q Consensus 614 LKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~-------kLeEL 686 (1170)
+..+.+.+..+++.+++|+.+...+|.....-...|+.|+.+...-++.....+ ..++.++.+||. ++.++
T Consensus 412 ~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~--e~~q~e~~~~Q~~~e~~~~e~~e~ 489 (607)
T KOG0240|consen 412 LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLY--EDIQQELSEIQEENEAAKDEVKEV 489 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677788888888888887777777777777777765555555422333 344555555553 23344
Q ss_pred HHHHHHHHHHhCccc
Q 001058 687 VKILNDRCKQYGLRA 701 (1170)
Q Consensus 687 EKaL~Earqq~GL~a 701 (1170)
-.+|.+.|..|+..-
T Consensus 490 ~~al~el~~~~~~~~ 504 (607)
T KOG0240|consen 490 LTALEELAVNYDQKS 504 (607)
T ss_pred HHHHHHHHHhhhHHH
Confidence 577777777666443
No 380
>PRK09343 prefoldin subunit beta; Provisional
Probab=94.58 E-value=0.89 Score=45.40 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001058 572 LEKEILTSREKIQFCSTKMQELILYKSRCD 601 (1170)
Q Consensus 572 LEaEI~~lreEIE~lrtQMQELqm~kqR~e 601 (1170)
+..++++.-.+++.++.+++.+.+.++..+
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le 34 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQID 34 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455544555555555555544444433
No 381
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=94.56 E-value=1 Score=52.99 Aligned_cols=8 Identities=25% Similarity=0.812 Sum_probs=4.2
Q ss_pred ccCcchhh
Q 001058 733 DEGFTFVK 740 (1170)
Q Consensus 733 d~gf~~~~ 740 (1170)
..||++|+
T Consensus 398 ~RGya~v~ 405 (438)
T PRK00286 398 ARGYAIVR 405 (438)
T ss_pred cCceEEEE
Confidence 45565553
No 382
>PF15294 Leu_zip: Leucine zipper
Probab=94.55 E-value=0.75 Score=52.09 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRC---------DNRLNEITERVSGDKREVELLAKKYEEKYKQSGDV 635 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~---------edELneI~eEvsaLKrEIEsLrqKYEE~~KQISEL 635 (1170)
+..++..++.+....-++-..++.++.+|+...... ..+|..+...++.+|.+++.. ......+...|
T Consensus 144 Lk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~---~~d~~~~~k~L 220 (278)
T PF15294_consen 144 LKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA---LQDKESQQKAL 220 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 334455555555444444444555555555411111 112444444455555444433 22223566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHHHHHHHH
Q 001058 636 ASKLTLEEATFRDIQEKKMELYQAILKMEGES-GDGTLQQHADHIQNELEELVKIL 690 (1170)
Q Consensus 636 qsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~-edA~LQeRIkqiQ~kLeELEKaL 690 (1170)
+..|+....+|-.+|+++...+.+|.+.-+.- .-.++++=+..-|.+|.+|.+.|
T Consensus 221 ~e~L~~~KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl 276 (278)
T PF15294_consen 221 EETLQSCKHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRL 276 (278)
T ss_pred HHHHHHHHHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHh
Confidence 77777777777788888777777777644322 11334444555556666666554
No 383
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=94.54 E-value=0.22 Score=57.28 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY-EEKYKQSGDVASKLTLEEAT 645 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKY-EE~~KQISELqsqIA~LEAe 645 (1170)
+..++|+.+..++++.-..|+.+++|+..-...|...++..+.+++.+++.++.++... .+..+.+.+ +|.+
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~-------L~~~ 76 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEK-------LEED 76 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHH-------HHHH
Confidence 45567788888888888889999999888888888878877777777777777774431 122233344 4444
Q ss_pred HHHHHHHHHHHHH
Q 001058 646 FRDIQEKKMELYQ 658 (1170)
Q Consensus 646 LQDIQeQ~~eLqq 658 (1170)
|++.+.++.++++
T Consensus 77 Ik~r~~~l~DmEa 89 (330)
T PF07851_consen 77 IKERRCQLFDMEA 89 (330)
T ss_pred HHHHHhhHHHHHh
Confidence 4455555555553
No 384
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=94.54 E-value=2.3 Score=46.97 Aligned_cols=43 Identities=33% Similarity=0.390 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHH
Q 001058 583 IQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 625 (1170)
Q Consensus 583 IE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKY 625 (1170)
++.+...|++|..-..+|...|+++.+.+..-.++-+.+|.+|
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~ 66 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKY 66 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666666666666666666666666666666
No 385
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=94.53 E-value=0.46 Score=44.60 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 632 SGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 632 ISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
+.+|+.++..++.+++++..++.++..++.+|+
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444443
No 386
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=94.53 E-value=0.62 Score=45.44 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSR 599 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR 599 (1170)
.++..++.++..+..++..+..+++|..+....
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666665555443
No 387
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.52 E-value=3 Score=52.67 Aligned_cols=8 Identities=13% Similarity=0.455 Sum_probs=4.0
Q ss_pred CCCHHHHH
Q 001058 35 ELTPDIVK 42 (1170)
Q Consensus 35 e~t~d~~~ 42 (1170)
-...|+|+
T Consensus 17 ~~~~~~~~ 24 (762)
T PLN03229 17 ASASDLLR 24 (762)
T ss_pred cchHHHHH
Confidence 33455555
No 388
>PF14992 TMCO5: TMCO5 family
Probab=94.52 E-value=0.4 Score=54.16 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=8.4
Q ss_pred ccHHHHHHHHHHHHH
Q 001058 670 GTLQQHADHIQNELE 684 (1170)
Q Consensus 670 A~LQeRIkqiQ~kLe 684 (1170)
..||+.|+++..+.+
T Consensus 154 ~klkE~L~rmE~ekE 168 (280)
T PF14992_consen 154 KKLKEKLRRMEEEKE 168 (280)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655444
No 389
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=94.52 E-value=1.2 Score=43.76 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001058 568 KVEELEKEILTSREKIQ 584 (1170)
Q Consensus 568 KL~ELEaEI~~lreEIE 584 (1170)
++...+.++..+.+...
T Consensus 28 ~~~~~~~~l~~l~~~~~ 44 (141)
T TIGR02473 28 EFERLETQLQQLIKYRE 44 (141)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 390
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.51 E-value=0.01 Score=75.05 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 610 RVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKM 654 (1170)
Q Consensus 610 EvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~ 654 (1170)
++..++++++.|+.+|++......+|+.+|..+.++|.+++.++.
T Consensus 265 ~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e 309 (859)
T PF01576_consen 265 QLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYE 309 (859)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333445555555555555444444444444444444444444433
No 391
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=94.49 E-value=2.2 Score=48.87 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 577 LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 639 (1170)
Q Consensus 577 ~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqI 639 (1170)
..+.-+|+.|+.+|.+|+-....+..++.+...++..+|+.+..|+.++++++.+|.+....|
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544444444444444444455555556666666555555555555544443
No 392
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=94.47 E-value=1.5 Score=47.07 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHH
Q 001058 630 KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELV 687 (1170)
Q Consensus 630 KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELE 687 (1170)
.+|.+|+.+|-.++.+.+.+..+++....+|. .|+..+..|+..++.+|
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~---------~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEIS---------RLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333 34555555555555443
No 393
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=94.46 E-value=2.4 Score=42.48 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=16.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTLE 642 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~L 642 (1170)
.++..++.|..+|+.+...+.+....|...
T Consensus 76 ~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~ 105 (213)
T cd00176 76 EIQERLEELNQRWEELRELAEERRQRLEEA 105 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666555555555544443
No 394
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.46 E-value=1.3 Score=50.57 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=4.7
Q ss_pred ccHHHHHHHHH
Q 001058 670 GTLQQHADHIQ 680 (1170)
Q Consensus 670 A~LQeRIkqiQ 680 (1170)
..|.++++.+-
T Consensus 138 ~~L~eKlK~l~ 148 (309)
T PF09728_consen 138 EELREKLKSLI 148 (309)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 395
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.43 E-value=4.3 Score=44.67 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 638 KLTLEEATFRDIQEKKMELYQAILKM 663 (1170)
Q Consensus 638 qIA~LEAeLQDIQeQ~~eLqqALqkL 663 (1170)
.++...+.+...+.++...-.++..+
T Consensus 117 ~~~~~~~~l~KaK~~Y~~~c~e~e~~ 142 (261)
T cd07648 117 AIQTTTAALQKAKEAYHARCLELERL 142 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555544444444443
No 396
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=94.43 E-value=1.1 Score=54.88 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHH
Q 001058 580 REKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYE 626 (1170)
Q Consensus 580 reEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYE 626 (1170)
+++++.|++++.+|.-.+=+.-.+|...++++.++++|++..+.+|+
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~ 236 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIK 236 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888777664222222344555555555555555444444
No 397
>COG5283 Phage-related tail protein [Function unknown]
Probab=94.41 E-value=1.2 Score=58.06 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 589 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 589 QMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
+|+.|........--+.+..+++.++.+.++..++.|.+.-.|+..++..++.+-+++--..+|+...+.++++
T Consensus 58 k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~ 131 (1213)
T COG5283 58 KYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQR 131 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH
Confidence 44444444333334455555566666666666666666666666666666555444444443333333333333
No 398
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=94.34 E-value=0.042 Score=41.88 Aligned_cols=27 Identities=26% Similarity=0.577 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCCCCCCcCHHHHHHHHH
Q 001058 428 VLKQVWDLSDQDNDGMLSLKEFCTALY 454 (1170)
Q Consensus 428 eL~qIWdLaD~D~DGkLdfdEF~iAM~ 454 (1170)
+|..+|+.+|.|++|+|+++||..+|.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478999999999999999999997665
No 399
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=94.34 E-value=0.34 Score=58.11 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001058 672 LQQHADHIQNELEEL 686 (1170)
Q Consensus 672 LQeRIkqiQ~kLeEL 686 (1170)
|+++|..++.+|..|
T Consensus 157 ~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 157 LEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344444444444444
No 400
>PF13166 AAA_13: AAA domain
Probab=94.33 E-value=1.7 Score=53.54 Aligned_cols=132 Identities=19% Similarity=0.283 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSR------CDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL- 639 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR------~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqI- 639 (1170)
..+.++...+..+.+.++.++..+.+....... ..+.+..+...+.+++..++....+.++..+++.++...+
T Consensus 322 ~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~ 401 (712)
T PF13166_consen 322 EDKEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLW 401 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666555544432211111 1111222222233333333333333333333333333332
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH----------HHHHHHHHHHhCcc
Q 001058 640 ----TLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL----------VKILNDRCKQYGLR 700 (1170)
Q Consensus 640 ----A~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL----------EKaL~Earqq~GL~ 700 (1170)
+.++..+..++.++..++.+|..++... ..++.++..++.++.+| .+.+++.++.+|..
T Consensus 402 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g~~ 474 (712)
T PF13166_consen 402 LHLIAKLKEDIEEYQKEIKELEKEINSLEKKL--KKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLGFS 474 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 2223344444455555555555544333 33455555555554444 35566677777644
No 401
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.33 E-value=0.76 Score=50.64 Aligned_cols=43 Identities=30% Similarity=0.380 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 615 KREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELY 657 (1170)
Q Consensus 615 KrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLq 657 (1170)
|+..+.++.|+++.+++..+|-..+.++|+++..+|+++..|+
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444433333333333
No 402
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=94.29 E-value=0.046 Score=63.34 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 621 LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 621 LrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
|..+++++...|++|+..|..++..++++.+++..|.+.|.+|+
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555555
No 403
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=94.28 E-value=0.5 Score=50.41 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 576 ILTSREKIQFCSTKMQELILYKSRC-DNRLNEITERVS--GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEK 652 (1170)
Q Consensus 576 I~~lreEIE~lrtQMQELqm~kqR~-edELneI~eEvs--aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ 652 (1170)
|..|+.||..|+++..+|....... .-++.+.. ... ..-.+++.+-.++|+++.-+.+|....++|..+|.+++..
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~-~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~ 96 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQLSASQVLESPSQR-RRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKA 96 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCccccc-ccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655544211 00000110 000 1123344455555555555555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 001058 653 KMELYQAILKM 663 (1170)
Q Consensus 653 ~~eLqqALqkL 663 (1170)
...|...|++|
T Consensus 97 N~~L~~dl~kl 107 (182)
T PF15035_consen 97 NEALQEDLQKL 107 (182)
T ss_pred HHHHHHHHHHH
Confidence 55555555553
No 404
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=94.26 E-value=0.89 Score=50.82 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 637 SKLTLEEATFRDIQEKKMELYQAI 660 (1170)
Q Consensus 637 sqIA~LEAeLQDIQeQ~~eLqqAL 660 (1170)
+++...+++|+.+++++.....++
T Consensus 189 ~~~~~~~~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 189 AQLDAAQAELDTLQAQIDAAIAAL 212 (301)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333334444444444443333333
No 405
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=94.26 E-value=2.8 Score=47.40 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 614 DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQ 658 (1170)
Q Consensus 614 LKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqq 658 (1170)
...++|.++.+++.+....++|.++|+.-.++|...|++++.|+.
T Consensus 117 i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 117 IQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555566666666666666666666555543
No 406
>PRK14011 prefoldin subunit alpha; Provisional
Probab=94.23 E-value=0.99 Score=46.68 Aligned_cols=36 Identities=6% Similarity=0.059 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN 602 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~ed 602 (1170)
.+|.++-.++..++++++.|+..++.|.+..++...
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~ 38 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLK 38 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777777777777777776666544
No 407
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=94.23 E-value=2 Score=48.29 Aligned_cols=91 Identities=22% Similarity=0.214 Sum_probs=45.3
Q ss_pred HHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 001058 543 LMDQLSKEEQESLNAKLKEATEADKKVEELEKEI------------LTSREKIQFCSTKMQELILYKSRCDNRLNEITER 610 (1170)
Q Consensus 543 lLnqls~EEe~~LnserqEAEEaqKKL~ELEaEI------------~~lreEIE~lrtQMQELqm~kqR~edELneI~eE 610 (1170)
+|.-.....-.+++. |.++-..||.|++.+| -.|..+-..|..+-+||=++.+ +-+|-++..+
T Consensus 170 llDPAinl~F~rlK~---ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s--~Gria~Le~e 244 (330)
T KOG2991|consen 170 LLDPAINLFFLRLKG---ELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQAS--EGRIAELEIE 244 (330)
T ss_pred hhChHHHHHHHHHHH---HHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhh--cccHHHHHHH
Confidence 333344455555554 4444458899998887 2233333333333334433333 2334555555
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 611 VSGDKREVELLAKKYEEKYKQSGDVASK 638 (1170)
Q Consensus 611 vsaLKrEIEsLrqKYEE~~KQISELqsq 638 (1170)
++=.|..-++|+...+++++-+.+|.+-
T Consensus 245 LAmQKs~seElkssq~eL~dfm~eLded 272 (330)
T KOG2991|consen 245 LAMQKSQSEELKSSQEELYDFMEELDED 272 (330)
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHH
Confidence 5555555555555555555444444433
No 408
>PF14282 FlxA: FlxA-like protein
Probab=94.21 E-value=0.18 Score=49.16 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 628 KYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 628 ~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
+..++..|+.+|+.|+++|+.++.++.+......
T Consensus 49 k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~~ 82 (106)
T PF14282_consen 49 KQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQKQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666777777777777777666665544433
No 409
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.20 E-value=2.3 Score=55.16 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=11.2
Q ss_pred CccccccccCCcccCcc
Q 001058 702 KPTLLVELPFGWQPGIQ 718 (1170)
Q Consensus 702 K~~~~vElp~gw~~~~q 718 (1170)
|-...||+=+.|=||.=
T Consensus 489 ~~~eave~lKr~fPgv~ 505 (1141)
T KOG0018|consen 489 RKQEAVEALKRLFPGVY 505 (1141)
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 34456777777877753
No 410
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=94.18 E-value=0.24 Score=51.19 Aligned_cols=64 Identities=13% Similarity=0.273 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 632 SGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 632 ISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
+.++...|..++.+++.++.++..|+.+|..|...-.+..|...|.++..++++|+..|...+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444555555555555555554444455555555555555555555555444
No 411
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=94.17 E-value=3.3 Score=44.98 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=5.6
Q ss_pred HHHhcHHHHHHHHHH
Q 001058 610 RVSGDKREVELLAKK 624 (1170)
Q Consensus 610 EvsaLKrEIEsLrqK 624 (1170)
.+..+..+.+..+++
T Consensus 95 ~l~~~~~~~~~~rK~ 109 (251)
T cd07653 95 ELKTLISELRQERKK 109 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 412
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.61 Score=48.33 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 643 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 643 EAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
+..+..+++++++|..++++|++-= +.|-+++.+++.++.++
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l--~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQAL--AELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4566666666666666666644322 33344444444444433
No 413
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.1 Score=52.41 Aligned_cols=65 Identities=25% Similarity=0.382 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH--------cC---CC-CHHHHHHHH----HHhCCCCCCCcCHHHH
Q 001058 386 KMTHSEVQKYTKVFVQVDIDRDGKITGEQAYNLFL--------SW---RL-PREVLKQVW----DLSDQDNDGMLSLKEF 449 (1170)
Q Consensus 386 ~LSpEEkqeyreaF~~fDkDgDG~ISgdELr~~fL--------GS---~L-peeeL~qIW----dLaD~D~DGkLdfdEF 449 (1170)
.|++++.+ --.|.+.|.|++|+|++-||..++. +. .| ++.+|..|+ +.-|.|+||.|+|.||
T Consensus 62 ~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 57777654 2459999999999999999998881 22 12 355665554 5678999999999999
Q ss_pred HHH
Q 001058 450 CTA 452 (1170)
Q Consensus 450 ~iA 452 (1170)
+.+
T Consensus 140 lK~ 142 (144)
T KOG4065|consen 140 LKR 142 (144)
T ss_pred Hhh
Confidence 853
No 414
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=94.16 E-value=0.98 Score=50.31 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 001058 683 LEELVKILNDR 693 (1170)
Q Consensus 683 LeELEKaL~Ea 693 (1170)
|.+++..+.++
T Consensus 188 i~~~~~~l~~a 198 (334)
T TIGR00998 188 VQEAKERLKTA 198 (334)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 415
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.16 E-value=1.4 Score=55.27 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=37.3
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH--
Q 001058 611 VSGDKREVELLAKKYEEKYKQSGDVASK----LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELE-- 684 (1170)
Q Consensus 611 vsaLKrEIEsLrqKYEE~~KQISELqsq----IA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLe-- 684 (1170)
+..+|.|-..|+..+.++-+++-+..++ +.++..++.++..++..++=.|++ -.+||..|...|++--++++
T Consensus 464 ~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~--sekEN~iL~itlrQrDaEi~RL 541 (861)
T PF15254_consen 464 IENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEA--SEKENQILGITLRQRDAEIERL 541 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHhhhhHhhhHHHHHHHHHHHH
Confidence 3345555555555544444444333322 233344555555555555555544 34445555555555444444
Q ss_pred -HHHHHHH
Q 001058 685 -ELVKILN 691 (1170)
Q Consensus 685 -ELEKaL~ 691 (1170)
||-+.|+
T Consensus 542 ~eLtR~LQ 549 (861)
T PF15254_consen 542 RELTRTLQ 549 (861)
T ss_pred HHHHHHHH
Confidence 4444444
No 416
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=94.15 E-value=0.81 Score=49.31 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 001058 589 KMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESG 668 (1170)
Q Consensus 589 QMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~e 668 (1170)
-|++++...+-+.+|+..+++--.+|+.+-++|+.-|| -|.|-+.+-..|..+-|. -++|.
T Consensus 42 lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCC------------------FLDddRqKgrklarEWQr-FGryt 102 (195)
T PF10226_consen 42 LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCC------------------FLDDDRQKGRKLAREWQR-FGRYT 102 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------------ccchhHHHhHHHhHHHHH-hhhHH
Confidence 35555555555555555555444455555555555554 555556666667666664 47777
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 669 DGTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 669 dA~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
-..++++...|+++|.+||....+.++
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~r 129 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIR 129 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999866665554
No 417
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.13 E-value=3.6 Score=46.10 Aligned_cols=30 Identities=3% Similarity=0.031 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 634 DVASKLTLEEATFRDIQEKKMELYQAILKM 663 (1170)
Q Consensus 634 ELqsqIA~LEAeLQDIQeQ~~eLqqALqkL 663 (1170)
+++..++.++..+...|+.+...-.++..+
T Consensus 120 ~~~~~~~~~~~~~~KaK~~Y~~~c~e~e~~ 149 (269)
T cd07673 120 EAVQNIQSITQALQKSKENYNAKCLEQERL 149 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666667777777766666655554
No 418
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=94.13 E-value=6.4 Score=39.88 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 576 ILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 638 (1170)
Q Consensus 576 I~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsq 638 (1170)
+..+.+.++.+..+..+|...+-..+.+|.+++.++..+-.++..|+.+|+++.++..++...
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~ 91 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSN 91 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344555555555555555555555566788888888888888888899998888888877544
No 419
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=94.12 E-value=0.54 Score=57.11 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 575 EILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKM 654 (1170)
Q Consensus 575 EI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~ 654 (1170)
++.-+..|++.|-.+-.+|...++.+-.--+.+++++-+|.-|-+-||.+++-.++..-.|+++|..+|.+|+.++.+..
T Consensus 295 dllGMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 295 DLLGMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred hhhcchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566665555444454455555444466777888888888888888887777777888999999999998888877
Q ss_pred HHHHHHHH
Q 001058 655 ELYQAILK 662 (1170)
Q Consensus 655 eLqqALqk 662 (1170)
.-.+.+.+
T Consensus 375 ~ar~~~~~ 382 (832)
T KOG2077|consen 375 DARQKAKD 382 (832)
T ss_pred HHHHhhcc
Confidence 66555444
No 420
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=94.11 E-value=0.047 Score=40.58 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCCCCCcCHHHHHHH
Q 001058 429 LKQVWDLSDQDNDGMLSLKEFCTA 452 (1170)
Q Consensus 429 L~qIWdLaD~D~DGkLdfdEF~iA 452 (1170)
|++++..+|.|+||.|+++||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 567899999999999999999854
No 421
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.07 E-value=1.4 Score=55.05 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=22.4
Q ss_pred HHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 596 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLT 640 (1170)
Q Consensus 596 ~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA 640 (1170)
.++|+..+|..+++++.+.+++-+.|+..+|.+..++.+|.++.+
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~ 261 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSL 261 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555544333
No 422
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.06 E-value=1.4 Score=58.19 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001058 621 LAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGE 666 (1170)
Q Consensus 621 LrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r 666 (1170)
|+.+++++...|..+-+++..+.+.++-++..+.+++.++.+++..
T Consensus 883 le~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~ 928 (1294)
T KOG0962|consen 883 LEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNE 928 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666666666666644
No 423
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.04 E-value=1.6 Score=51.03 Aligned_cols=91 Identities=9% Similarity=0.151 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 574 KEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS----GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI 649 (1170)
Q Consensus 574 aEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvs----aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDI 649 (1170)
..+...++-.....+.+.+...+..+...+|....++|. -+...++.|.++|-+.+.++++++.++..+-+.+...
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~ 299 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSER 299 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334333333334444444555555555555555555554 4555666788888888888898888888888888888
Q ss_pred HHHHHHHHHHHHHHh
Q 001058 650 QEKKMELYQAILKME 664 (1170)
Q Consensus 650 QeQ~~eLqqALqkLE 664 (1170)
..++.++..+|.++.
T Consensus 300 t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 300 TRELAEISEELEQVK 314 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888777533
No 424
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=3.1 Score=45.52 Aligned_cols=86 Identities=23% Similarity=0.280 Sum_probs=49.8
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHh-CCCCCccHHHHHHHHHHHHHHHH-
Q 001058 612 SGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQE-K-KMELYQAILKME-GESGDGTLQQHADHIQNELEELV- 687 (1170)
Q Consensus 612 saLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQe-Q-~~eLqqALqkLE-~r~edA~LQeRIkqiQ~kLeELE- 687 (1170)
...+||++.+.+.+++...+|.+...+|+.+.-+|.+++. + ..+=..+|.++- ..-.-..-...|..+..+|++|+
T Consensus 85 e~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~ 164 (222)
T KOG3215|consen 85 EMNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEELDD 164 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888888888777766666554 1 112222333322 22111222345666667777663
Q ss_pred ------HHHHHHHHHh
Q 001058 688 ------KILNDRCKQY 697 (1170)
Q Consensus 688 ------KaL~Earqq~ 697 (1170)
..|--||+|+
T Consensus 165 ~~~s~~~klelrRkqf 180 (222)
T KOG3215|consen 165 LNNSTETKLELRRKQF 180 (222)
T ss_pred HhhhhHHHHHHHhhcc
Confidence 4455555543
No 425
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.68 Score=46.71 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001058 633 GDVASKLTLEEATFRDIQEKKMELYQAILKMEGE 666 (1170)
Q Consensus 633 SELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r 666 (1170)
.-|+-+|..||-+-.++++++.+|+.+|.++.+.
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444445555566666666666666666665543
No 426
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=93.99 E-value=0.88 Score=48.47 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH----HHHHHHH
Q 001058 619 ELLAKKYEEKYKQSGDVASKLTLEEATFRDIQ-EKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL----VKILNDR 693 (1170)
Q Consensus 619 EsLrqKYEE~~KQISELqsqIA~LEAeLQDIQ-eQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL----EKaL~Ea 693 (1170)
++++.++.++.++|+.-+++|..+.+-...+. +.+.++...+++ +|+. -++|-+.++.-++.| -+...+.
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~----~~~~-wrk~krmf~ei~d~~~e~~pk~ksel 193 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQK----YCKE-WRKRKRMFREIIDKLLEGLPKKKSEL 193 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 33444444444444444445544444444432 335555555554 1111 222333444333333 3555555
Q ss_pred HHHhCcc
Q 001058 694 CKQYGLR 700 (1170)
Q Consensus 694 rqq~GL~ 700 (1170)
-..+|+.
T Consensus 194 ~eelGIE 200 (201)
T KOG4603|consen 194 YEELGIE 200 (201)
T ss_pred HHHhCcC
Confidence 5555553
No 427
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=93.99 E-value=0.44 Score=58.29 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=58.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001058 549 KEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK 628 (1170)
Q Consensus 549 ~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~ 628 (1170)
.+|++++-+.--+.|.++-++ .-|.++++.-..|+.+|+--+....+.|+...+.++..=..+.+|+.+-=++
T Consensus 107 ~~yQerLaRLe~dkesL~LQv-------svLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDL 179 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQV-------SVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDL 179 (861)
T ss_pred hHHHHHHHHHhcchhhheehH-------HHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHH
Confidence 566666654222333333344 4444444444444445554444455556666665544444445565555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 629 YKQSGDVASKLTLEEATFRDIQEKKMELYQAILKM 663 (1170)
Q Consensus 629 ~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkL 663 (1170)
-.+|++|.-+++.+|.+-.+..+++..-+..++++
T Consensus 180 maevSeLKLkltalEkeq~e~E~K~R~se~l~qev 214 (861)
T KOG1899|consen 180 MAEVSELKLKLTALEKEQNETEKKLRLSENLMQEV 214 (861)
T ss_pred HHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHH
Confidence 67888888888777766555555554444444443
No 428
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=93.96 E-value=2.9 Score=46.75 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=55.1
Q ss_pred chhhHHHHhhhcHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001058 537 PELEKHLMDQLSKEEQESLNAKLKEATE----ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS 612 (1170)
Q Consensus 537 P~LDd~lLnqls~EEe~~LnserqEAEE----aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvs 612 (1170)
+.|.-..|.++-+.+-. ++.|.|. +-.+|+.-.+.+-++.++|--|-..+-++.+.-+|++++|+-|..+..
T Consensus 69 s~l~~~~LeeliNkWs~----el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ 144 (254)
T KOG2196|consen 69 SSLTYKTLEELINKWSL----ELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQ 144 (254)
T ss_pred hhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555555444444332 2333333 335566666777888888888888888999999999999988876555
Q ss_pred hcHHHHHHHHHHHHH
Q 001058 613 GDKREVELLAKKYEE 627 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE 627 (1170)
+|+.-+-.|+.+.+.
T Consensus 145 ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 145 ELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444444445555543
No 429
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=93.94 E-value=2.5 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=15.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q 001058 670 GTLQQHADHIQNELEELVKILN 691 (1170)
Q Consensus 670 A~LQeRIkqiQ~kLeELEKaL~ 691 (1170)
+.++.++++++.+|.+++..+.
T Consensus 230 ~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 230 ETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888877776664
No 430
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=93.94 E-value=1.1 Score=45.84 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 001058 673 QQHADHIQNELEEL 686 (1170)
Q Consensus 673 QeRIkqiQ~kLeEL 686 (1170)
.+++..|+.+|.+|
T Consensus 97 e~K~~kyk~rLk~L 110 (136)
T PF04871_consen 97 EEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHHHHHHHc
Confidence 34444444444443
No 431
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.94 E-value=9.1 Score=40.48 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=17.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 553 ESLNAKLKEATEADKKVEELEKEILTSREKIQFCS 587 (1170)
Q Consensus 553 ~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lr 587 (1170)
.+.+..|+|.+.+.+.|.+++.++...-++++.|.
T Consensus 20 ~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 20 EIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544444444333
No 432
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=93.94 E-value=2.9 Score=44.84 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=20.2
Q ss_pred HHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 001058 596 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYK 630 (1170)
Q Consensus 596 ~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~K 630 (1170)
.+......|.....+++-|+++++-.|.-++...+
T Consensus 58 q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~ 92 (178)
T PF14073_consen 58 QNQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEK 92 (178)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666666666666666655554443
No 433
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.93 E-value=3.9 Score=49.17 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 001058 564 EADKKVEELEKEILTSR---EKIQFCSTKMQELILY 596 (1170)
Q Consensus 564 EaqKKL~ELEaEI~~lr---eEIE~lrtQMQELqm~ 596 (1170)
-+++||.|||.++.+.+ +=|.-|+.++.+|...
T Consensus 342 yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIed 377 (527)
T PF15066_consen 342 YLEKKVKELQMKITKQQVFVDIINKLKENIEELIED 377 (527)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 36688888877763322 3334555555555433
No 434
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=93.91 E-value=0.59 Score=50.76 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 637 SKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 637 sqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
.+|..||.++.++-.+.-+++.|...|+
T Consensus 175 ~~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 175 EELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665543
No 435
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=93.91 E-value=0.031 Score=52.21 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=36.9
Q ss_pred cccccccccccccCCHHHHHHHHhHHhhhhcCCCCCHHHH
Q 001058 2 QVWSHADQRKAGFLNRAEFFNALKLVTVAQSKRELTPDIV 41 (1170)
Q Consensus 2 qvWa~Ad~~r~GfLg~~eF~~am~lvs~aQs~~e~t~d~~ 41 (1170)
++|..+|.+..|+|.+.||+.+|.+|+..|.|..|++++=
T Consensus 48 ~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~~~ 87 (96)
T smart00027 48 KIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPASLP 87 (96)
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCccCC
Confidence 5788899999999999999999999999999999998753
No 436
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=93.89 E-value=3.8 Score=44.25 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=8.2
Q ss_pred cHHHHHHHHHHHHHHHH
Q 001058 671 TLQQHADHIQNELEELV 687 (1170)
Q Consensus 671 ~LQeRIkqiQ~kLeELE 687 (1170)
.|.+.|...+.+|+..+
T Consensus 155 ~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 155 ELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555555443
No 437
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.89 E-value=1.5 Score=53.11 Aligned_cols=126 Identities=16% Similarity=0.273 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKM-----QELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKL 639 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQM-----QELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqI 639 (1170)
++.||.+++.|...++.|+..|+++. +|-+ -.+-|..+|+.+..++.....+|+.+-.+....+-+++.|.++|
T Consensus 164 L~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~-~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql 242 (596)
T KOG4360|consen 164 LQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQ-LYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL 242 (596)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666555521 1211 22345566677777777777777665555444455566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 001058 640 TLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDR 693 (1170)
Q Consensus 640 A~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Ea 693 (1170)
.++...++-+.-++++|-+-|+.+.+.. ..|+.++++.+-+..|++..+.|+
T Consensus 243 ~d~qkk~k~~~~Ekeel~~~Lq~~~da~--~ql~aE~~EleDkyAE~m~~~~Ea 294 (596)
T KOG4360|consen 243 VDLQKKIKYLRHEKEELDEHLQAYKDAQ--RQLTAELEELEDKYAECMQMLHEA 294 (596)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666655444 445566666665555554444333
No 438
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=93.86 E-value=2.5 Score=45.20 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQEL 593 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQEL 593 (1170)
.++..|++++.+++++++.++.+++++
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555544
No 439
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.81 E-value=3.7 Score=45.97 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCc
Q 001058 672 LQQHADHIQNELEELVKILNDRCKQYGLRAKP 703 (1170)
Q Consensus 672 LQeRIkqiQ~kLeELEKaL~Earqq~GL~aK~ 703 (1170)
.+.+++.++.+|++++..|. +.-|.|--
T Consensus 184 ~~~~~~~~~~~l~~a~~~l~----~~~i~AP~ 211 (327)
T TIGR02971 184 AQAEVKSALEAVQQAEALLE----LTYVKAPI 211 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cCEEECCC
Confidence 34555666666665544443 33465533
No 440
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=93.81 E-value=3 Score=42.01 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 618 VELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEK 652 (1170)
Q Consensus 618 IEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ 652 (1170)
+..|...+.+....|..++..+......+..+..+
T Consensus 73 i~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~ 107 (147)
T PRK05689 73 LQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQR 107 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333333333333
No 441
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.80 E-value=6.9 Score=49.04 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=39.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 594 ILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 594 qm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
.+.+.....+....+-++.+++..+..-+.+-+.+.+||..|++.-..++.+|..+++++.+-.+++..
T Consensus 498 slEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 498 SLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444455555555555555566777777777666677777777776666665554
No 442
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=93.80 E-value=1.2 Score=47.93 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=40.6
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHH
Q 001058 607 ITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEEL 686 (1170)
Q Consensus 607 I~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeEL 686 (1170)
++.+-.....+...+++++++......++++.|..+|..|-.+|.+.+ .+...+ .....+|...+...+.|
T Consensus 101 lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~-------~~~~~k--e~~~~ei~~lks~~~~l 171 (190)
T PF05266_consen 101 LKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAA-------KLKEKK--EAKDKEISRLKSEAEAL 171 (190)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHH--HHHHHHHHHHHHHHHHH
Confidence 333333444555555555555544445545555444444444444433 322222 11235666666666666
Q ss_pred HHHHHHHHHHh
Q 001058 687 VKILNDRCKQY 697 (1170)
Q Consensus 687 EKaL~Earqq~ 697 (1170)
+..+..+..++
T Consensus 172 ~~~~~~~e~~F 182 (190)
T PF05266_consen 172 KEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 443
>PF15556 Zwint: ZW10 interactor
Probab=93.80 E-value=2.5 Score=46.23 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 560 KEATEADKKVEELEKEILTSREKIQ 584 (1170)
Q Consensus 560 qEAEEaqKKL~ELEaEI~~lreEIE 584 (1170)
+.+.++..+-.||.+.|+..-+-|.
T Consensus 59 qkai~aKeQWKeLKAtYqehVEaIk 83 (252)
T PF15556_consen 59 QKAIEAKEQWKELKATYQEHVEAIK 83 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666655444433
No 444
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=93.79 E-value=2.3 Score=46.56 Aligned_cols=50 Identities=12% Similarity=0.227 Sum_probs=21.0
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001058 610 RVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGE 666 (1170)
Q Consensus 610 EvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r 666 (1170)
.|.++|+.|+.++.++++..+.+.+ +...+.++..+-...|.++-+|.+|
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~-------aK~~Y~~ai~~Rs~sQrEvn~LLqR 82 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVRE-------AKAAYDDAIQQRSSSQREVNELLQR 82 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555444444433333333 3333344444444444444444433
No 445
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=93.79 E-value=3.1 Score=40.72 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 624 KYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 624 KYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
++++..+...+....|..+.++|..++.++..++..|.
T Consensus 68 ~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 68 RAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444443
No 446
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=93.79 E-value=2.8 Score=47.46 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=29.5
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 612 SGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 612 saLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
...+.|++.++.++.+..++++++..+|.++.+.|.+++.+-..|...+..
T Consensus 203 ~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 203 ELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555666666666666666666666665555555543
No 447
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.77 E-value=4.5 Score=50.64 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 634 DVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 634 ELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
++..+-+--|.++++++.||++---+|..|.+.+|...|+. -.++|.+|++.-++-|+
T Consensus 1084 er~~q~qKhenqmrdl~~qce~ni~EL~qlQNEKchlLvEh----EtqklKelde~h~~~~~ 1141 (1187)
T KOG0579|consen 1084 EREDQDQKHENQMRDLKEQCEENIIELDQLQNEKCHLLVEH----ETQKLKELDEKHHEMRE 1141 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 33333333467899999999999999999999998875433 34556666555555544
No 448
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.76 E-value=3.1 Score=50.84 Aligned_cols=144 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHH
Q 001058 550 EEQESLNAKLKEATE----ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKY 625 (1170)
Q Consensus 550 EEe~~LnserqEAEE----aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKY 625 (1170)
|+-+.-.+++|+..| ++..+.|.+.++-.+++.+-.|..-.-.+.-.....+.-|...+++|...++.+.......
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ 410 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIE 410 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----ccHHHHHHHHH--------HHHHHH
Q 001058 626 EEKY------KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGD-----GTLQQHADHIQ--------NELEEL 686 (1170)
Q Consensus 626 EE~~------KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ed-----A~LQeRIkqiQ--------~kLeEL 686 (1170)
++.. .+|..|+..+...+.++..+|....+|..=+.+.++.+.| +.|....++-+ +++.|+
T Consensus 411 ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ek 490 (654)
T KOG4809|consen 411 DDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELERHMKDQNKKVANLKHKQQLEK 490 (654)
T ss_pred HhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcCchhhhhhhHHhhHHHHHHHHH
Q ss_pred HHHHHHH
Q 001058 687 VKILNDR 693 (1170)
Q Consensus 687 EKaL~Ea 693 (1170)
+|+++..
T Consensus 491 kk~aq~l 497 (654)
T KOG4809|consen 491 KKNAQLL 497 (654)
T ss_pred HHHHHHH
No 449
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=93.74 E-value=2.2 Score=43.05 Aligned_cols=22 Identities=5% Similarity=0.113 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKEILTSREKIQFCST 588 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrt 588 (1170)
..+.+.+.++..+.+....|..
T Consensus 30 ~~~~~~~~~L~~L~~~~~~~~~ 51 (146)
T PRK07720 30 SRFEQVAEKLYELLKQKEDLEQ 51 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443433
No 450
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=93.73 E-value=2 Score=51.10 Aligned_cols=7 Identities=14% Similarity=0.686 Sum_probs=4.1
Q ss_pred ccCcchh
Q 001058 733 DEGFTFV 739 (1170)
Q Consensus 733 d~gf~~~ 739 (1170)
..||++|
T Consensus 393 ~RGYai~ 399 (432)
T TIGR00237 393 ARGYSIA 399 (432)
T ss_pred cCceEEE
Confidence 5566655
No 451
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=93.72 E-value=1.1 Score=40.06 Aligned_cols=29 Identities=14% Similarity=0.422 Sum_probs=22.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 669 DGTLQQHADHIQNELEELVKILNDRCKQY 697 (1170)
Q Consensus 669 dA~LQeRIkqiQ~kLeELEKaL~Earqq~ 697 (1170)
...++.+++.++...+.|.+.+.++++++
T Consensus 75 ~~~i~~~~~~l~~~w~~l~~~~~~r~~~L 103 (105)
T PF00435_consen 75 SDEIQEKLEELNQRWEALCELVEERRQKL 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 36778888888888888888888877653
No 452
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.70 E-value=0.52 Score=56.46 Aligned_cols=16 Identities=25% Similarity=0.164 Sum_probs=10.9
Q ss_pred CcccCCCCCCCCcccc
Q 001058 919 SMFGLDDFNIKPIKTE 934 (1170)
Q Consensus 919 ~~fg~~~~~~~pir~~ 934 (1170)
+=+=||++||+=|--+
T Consensus 346 LGWiSD~~GiPCIsGe 361 (472)
T TIGR03752 346 LGWISDPYGIPCISGE 361 (472)
T ss_pred ceeecCCCCCCCCCCc
Confidence 4466788888877533
No 453
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=93.70 E-value=0.13 Score=44.92 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=36.2
Q ss_pred cccHHHHHHHH--HcCCCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHH
Q 001058 409 KITGEQAYNLF--LSWRLPREVLKQVWDLSDQDNDGMLSLKEFCTALYL 455 (1170)
Q Consensus 409 ~ISgdELr~~f--LGS~LpeeeL~qIWdLaD~D~DGkLdfdEF~iAM~L 455 (1170)
+++..|++.+| +...+.+.-...++..+|.+++|.|..+||....+.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 46789999999 567788888999999999999999999999865543
No 454
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=2.4 Score=44.29 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN 602 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~ed 602 (1170)
+++.++..++.+.+++.+...++|..|..+..+...
T Consensus 16 k~~e~a~~el~k~~~~~~~~~~qL~~l~~y~~ey~q 51 (148)
T COG2882 16 KEEEEAAIELSKIRSEKENAEEQLKMLSGYRNEYEQ 51 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666555443
No 455
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=93.65 E-value=5.1 Score=43.58 Aligned_cols=56 Identities=9% Similarity=0.071 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 635 VASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 635 LqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
++.++...+.++...++++...-.+|......+ .+++..+=..|.+||+.+-+..|
T Consensus 155 ~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~-----~~~~~~~~~~~Q~lEe~Ri~~lk 210 (236)
T cd07651 155 NNAKLNKAQSSINSSRRDYQNAVKALRELNEIW-----NREWKAALDDFQDLEEERIQFLK 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444332222 22233333444455544444443
No 456
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=93.65 E-value=0.56 Score=46.12 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 001058 571 ELEKEILTSREKIQFCSTKMQELILYKSRCDN 602 (1170)
Q Consensus 571 ELEaEI~~lreEIE~lrtQMQELqm~kqR~ed 602 (1170)
++..++..++++++.+..++.+|.....++..
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~ 34 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELET 34 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544433
No 457
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=93.64 E-value=4.8 Score=47.68 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH----h-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 644 ATFRDIQEKKMELYQAILKM----E-GESGDGTLQQHADHIQNELEELVKILNDRCKQY 697 (1170)
Q Consensus 644 AeLQDIQeQ~~eLqqALqkL----E-~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~ 697 (1170)
.++.++..-+.....+|..+ . .+.....++.-++.++.+|+.|...-.++|+++
T Consensus 332 ~~l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l~eeE~~~Re~F 390 (412)
T PF04108_consen 332 DELEQLCEFYEGFLSAYDSLLLEVERRRAVRDKMKKIIREANEELDKLREEEQRRREAF 390 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555532 2 222335566667778888888877777777643
No 458
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=93.63 E-value=1.2 Score=50.84 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 567 KKVEELEKEILTSREKIQFCSTKMQELILYKS 598 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE~lrtQMQELqm~kq 598 (1170)
.......+++..-..+++.-+..++||.+..-
T Consensus 13 ~~F~aahaqm~sav~qL~~~r~~teelIr~rV 44 (324)
T PF12126_consen 13 GAFGAAHAQMRSAVSQLGRARADTEELIRARV 44 (324)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44445555554444555555556666555433
No 459
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.61 E-value=1 Score=57.03 Aligned_cols=40 Identities=5% Similarity=0.165 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHH
Q 001058 643 EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVK 688 (1170)
Q Consensus 643 EAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEK 688 (1170)
+..|++++++..++..+|.+ .. ..++++++++.+|+++.+
T Consensus 571 ~~~~~~a~~~~~~~i~~lk~---~~---~~~~~~~~~~~~~~~~~~ 610 (771)
T TIGR01069 571 QEALKALKKEVESIIRELKE---KK---IHKAKEIKSIEDLVKLKE 610 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cc---ccHHHHHHHHHHHHHHHH
Confidence 34455555555544444443 11 124456666666665543
No 460
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=3.5 Score=48.02 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=14.4
Q ss_pred CCCCCcccHHHHHHHHHcCCCCHHHHHHHH
Q 001058 404 IDRDGKITGEQAYNLFLSWRLPREVLKQVW 433 (1170)
Q Consensus 404 kDgDG~ISgdELr~~fLGS~LpeeeL~qIW 433 (1170)
.|.+|+|.. ..|..|..+..+|-.++
T Consensus 103 Vd~nG~V~L----PYLh~W~~pssdLv~Li 128 (365)
T KOG2391|consen 103 VDPNGKVYL----PYLHNWDPPSSDLVGLI 128 (365)
T ss_pred cCCCCeEec----hhhccCCCccchHHHHH
Confidence 356777743 34455666655554443
No 461
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=93.57 E-value=3 Score=51.67 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=15.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001058 633 GDVASKLTLE-EATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 633 SELqsqIA~L-EAeLQDIQeQ~~eLqqALq 661 (1170)
.+|..++..+ ++...+|+..+++.++.|.
T Consensus 392 ~el~~ql~~qa~ah~dhik~vvr~q~q~~~ 421 (657)
T KOG1854|consen 392 NELRNQLKRQAKAHLDHIKDVVRQQEQLLT 421 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444443 4566677777665555443
No 462
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=93.57 E-value=1.2 Score=45.13 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001058 616 REVELLAKKYEEKYKQSGDV 635 (1170)
Q Consensus 616 rEIEsLrqKYEE~~KQISEL 635 (1170)
.+++.++.++.+...++..|
T Consensus 55 ~~l~~~r~~l~~~~~~~~~L 74 (150)
T PF07200_consen 55 PELEELRSQLQELYEELKEL 74 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 463
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.55 E-value=5.9 Score=41.86 Aligned_cols=92 Identities=14% Similarity=0.280 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 571 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL-AKKYEEKYKQSGDVASKLTLEEATFRDI 649 (1170)
Q Consensus 571 ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsL-rqKYEE~~KQISELqsqIA~LEAeLQDI 649 (1170)
....++..++++++.++.++.++....-+++.+-.....++...-+....- +..+-+.+-+..+|+-+|+.++.+-.++
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qL 103 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQL 103 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444444444333333333333333333221 2333333344555555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 001058 650 QEKKMELYQAILK 662 (1170)
Q Consensus 650 QeQ~~eLqqALqk 662 (1170)
+.+-.+|+..|..
T Consensus 104 r~rRD~LErrl~~ 116 (159)
T PF05384_consen 104 RERRDELERRLRN 116 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 5554444444443
No 464
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=93.55 E-value=0.02 Score=57.79 Aligned_cols=96 Identities=9% Similarity=0.133 Sum_probs=3.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHH---HHHHHHHHHHH
Q 001058 613 GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADH---IQNELEELVKI 689 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkq---iQ~kLeELEKa 689 (1170)
..+..++.+...|.+....+.+.+..+......|.++...+.+|.+.+..|.++- ..|+.+..+ +...|++|.+.
T Consensus 21 ~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl--~~l~~~~~~~~~ls~nI~~Irel 98 (138)
T PF06009_consen 21 PISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKL--KPLENLSENNSNLSRNISRIREL 98 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccchhhHHHHHHHHHHH
Confidence 3333344444444443333333333333333344444444444443333333222 222222333 55555555555
Q ss_pred HHHHHH-----HhCcccCcccccccc
Q 001058 690 LNDRCK-----QYGLRAKPTLLVELP 710 (1170)
Q Consensus 690 L~Earq-----q~GL~aK~~~~vElp 710 (1170)
+.+||+ +.|+.+.....+||.
T Consensus 99 I~qAR~~An~IkV~m~F~g~s~velr 124 (138)
T PF06009_consen 99 IAQARDAANRIKVSMKFNGNSGVELR 124 (138)
T ss_dssp -------------B-------EEEE-
T ss_pred HHHHHHHHhheeeeeEECCCceeeeC
Confidence 555554 778888777777763
No 465
>PRK12705 hypothetical protein; Provisional
Probab=93.53 E-value=5.9 Score=48.45 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=3.0
Q ss_pred Ccccccc
Q 001058 716 GIQEGTA 722 (1170)
Q Consensus 716 ~~qe~a~ 722 (1170)
+||--|.
T Consensus 185 aiqr~a~ 191 (508)
T PRK12705 185 AMQRIAS 191 (508)
T ss_pred HHHHhcc
Confidence 4444443
No 466
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=93.51 E-value=0.72 Score=50.56 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 600 CDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 600 ~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
.+.+.+.+.+++..++.|+|+..+++|..++++.+|..+...+..++..+.++++.|+.+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 34445566666667777777777777777777777777766666666666666666666654
No 467
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=93.51 E-value=3.5 Score=47.39 Aligned_cols=102 Identities=14% Similarity=0.223 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHH----hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 589 KMQELILYKSRCDNRLNEITERVS----GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 589 QMQELqm~kqR~edELneI~eEvs----aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
.++.+...-...+..++.|..++. .|++.+..|+..|++...-+.+|+..|+..|.-+.+++++......+-.+
T Consensus 85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~-- 162 (333)
T PF05816_consen 85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAE-- 162 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccc--
Confidence 444554555555555666666555 45555566888888888888888888888877777777664322222221
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 665 GESGDGTLQQHADHIQNELEELVKILNDRCK 695 (1170)
Q Consensus 665 ~r~edA~LQeRIkqiQ~kLeELEKaL~Earq 695 (1170)
.|....+++.+++.-|+.|++-+.+...
T Consensus 163 ---~d~~~~q~~~~~~~~l~~leqRi~DL~~ 190 (333)
T PF05816_consen 163 ---GDQMDAQELADLEQALFRLEQRIQDLQL 190 (333)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445555555555566555555444
No 468
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=93.51 E-value=1.4 Score=50.42 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHhCcccCc
Q 001058 676 ADHIQNELEELVKILN---DRCKQYGLRAKP 703 (1170)
Q Consensus 676 IkqiQ~kLeELEKaL~---Earqq~GL~aK~ 703 (1170)
+..++.++++|...|. +.++.+||+--+
T Consensus 149 ~d~L~~e~~~Lre~L~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 149 HDSLREELDELREQLKQRDELIEKHGLVLVP 179 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence 3444444444433333 334688887654
No 469
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=93.50 E-value=5.2 Score=43.24 Aligned_cols=67 Identities=7% Similarity=0.091 Sum_probs=34.6
Q ss_pred HHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 596 YKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILK 662 (1170)
Q Consensus 596 ~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqk 662 (1170)
...+.+.-+.+....|...+..++..+.-..+.+.++..|...|......+.+++.-....+++|.+
T Consensus 75 ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 75 EVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444445555555555555555555555555555555555555555555555554
No 470
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=93.49 E-value=12 Score=41.81 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001058 564 EADKKVEELEKEILTSREKIQ-FCST 588 (1170)
Q Consensus 564 EaqKKL~ELEaEI~~lreEIE-~lrt 588 (1170)
+...+|.++-.+|.+.-++.. ||..
T Consensus 43 e~~~kL~~~~kkLg~~I~karPYyea 68 (239)
T PF05276_consen 43 ESTKKLNELAKKLGSCIEKARPYYEA 68 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 366777777777765555544 4444
No 471
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=93.48 E-value=4.2 Score=39.81 Aligned_cols=69 Identities=23% Similarity=0.163 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 586 CSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKM 654 (1170)
Q Consensus 586 lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~ 654 (1170)
|+.+-+.|.....+++.=|.+...+.....+.++.-.....+...+|..|...|..+...+..+..++.
T Consensus 37 L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 37 LEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444443444433333333333333333333444555555555555544444444444
No 472
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=93.47 E-value=4.7 Score=49.18 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 001058 641 LEEATFRDIQEKKMELYQAILKMEGES 667 (1170)
Q Consensus 641 ~LEAeLQDIQeQ~~eLqqALqkLE~r~ 667 (1170)
.++.+|+.+++++..|+++|.-.+..|
T Consensus 459 ~l~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 459 SLEEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444444444444444444333
No 473
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=93.46 E-value=2 Score=49.50 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhCcccCcccccc
Q 001058 684 EELVKILNDRCKQYGLRAKPTLLVE 708 (1170)
Q Consensus 684 eELEKaL~Earqq~GL~aK~~~~vE 708 (1170)
+++.-|+.+-|=||-+++|++..+|
T Consensus 169 k~n~~AIkKSrpYfE~k~~~t~~le 193 (426)
T KOG2008|consen 169 KKNKRAIKKSRPYFELKAKYTVQLE 193 (426)
T ss_pred HHhHHHHhhcchHHHHHHHHHHHHH
Confidence 3444444555558888888876544
No 474
>PF15294 Leu_zip: Leucine zipper
Probab=93.46 E-value=0.59 Score=52.86 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 630 KQSGDVASKLTLEEATFRDIQEKKMELYQAIL 661 (1170)
Q Consensus 630 KQISELqsqIA~LEAeLQDIQeQ~~eLqqALq 661 (1170)
.++.+|+.+++.++.+|..........+.+|.
T Consensus 190 q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~ 221 (278)
T PF15294_consen 190 QDLSDLENKMAALKSELEKALQDKESQQKALE 221 (278)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766555554444443333333
No 475
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=93.44 E-value=0.53 Score=43.60 Aligned_cols=61 Identities=23% Similarity=0.233 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 604 LNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKME 664 (1170)
Q Consensus 604 LneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE 664 (1170)
|.+..++|+.|..|-|.|..+--.....|..|..++.++|.++..++.++..+...+..|+
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554433333455555555555555555555555555555555543
No 476
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=93.43 E-value=10 Score=41.20 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=28.2
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCC
Q 001058 607 ITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLE-EATFRDIQEKKMELYQAILKMEGES 667 (1170)
Q Consensus 607 I~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~L-EAeLQDIQeQ~~eLqqALqkLE~r~ 667 (1170)
+...+......++..+.+|+...+++..+..+...+ ..++..++.++...++++.+.++.+
T Consensus 112 ~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y 173 (236)
T cd07651 112 LLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDY 173 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555666665555555444332111 1234445555555554444444444
No 477
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=93.42 E-value=1.3 Score=44.97 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 571 ELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDI 649 (1170)
Q Consensus 571 ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDI 649 (1170)
.+.++++...+.|..-|++|+ ....+++..|++..+-.+.-+.++.+++..+++...++..++..+..||..|..+
T Consensus 47 ~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333322 2333333334444333334444444444444444444444444444444444433
No 478
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=93.39 E-value=14 Score=40.64 Aligned_cols=18 Identities=6% Similarity=0.403 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001058 567 KKVEELEKEILTSREKIQ 584 (1170)
Q Consensus 567 KKL~ELEaEI~~lreEIE 584 (1170)
.++..+...|.++...|+
T Consensus 34 ~r~~~i~e~i~~Le~~l~ 51 (247)
T PF06705_consen 34 QRFQDIKEQIQKLEKALE 51 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444433333333
No 479
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=93.39 E-value=4.1 Score=44.71 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=34.0
Q ss_pred hHHHHhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHhcH
Q 001058 540 EKHLMDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQEL----ILYKSRCDNRLNEITERVSGDK 615 (1170)
Q Consensus 540 Dd~lLnqls~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQEL----qm~kqR~edELneI~eEvsaLK 615 (1170)
-+.||+++..+|...+. +.+++..++.+|+.++.....-.+. +.++.. ...+..+.-+...|++++.++.
T Consensus 28 VdeFLD~V~~dye~~l~----e~~~l~~~i~~L~~~l~~~~~~~~s--~~i~~a~~~a~~~~~~a~~ea~~il~~a~~~a 101 (212)
T COG3599 28 VDEFLDDVIDDYEQLLD----ENEDLEDEIDELKEELKEAADAEDS--QAIQQAETEAEELKQAAEAEADDILKRASAQA 101 (212)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788887766553 4444444444444444322222111 012221 1233334445566666665444
Q ss_pred HHHH
Q 001058 616 REVE 619 (1170)
Q Consensus 616 rEIE 619 (1170)
..|-
T Consensus 102 ~~v~ 105 (212)
T COG3599 102 QRVF 105 (212)
T ss_pred HHHH
Confidence 4443
No 480
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=93.38 E-value=1.2 Score=45.29 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 588 TKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASKLTLEEA 644 (1170)
Q Consensus 588 tQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEA 644 (1170)
.+++.|-.+..++..-.+.+.+++..+++.++.++.+++.++.-+..|+.+|.++|.
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333333334455666666677777777777777777777777766653
No 481
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=93.38 E-value=1.3 Score=52.66 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001058 578 TSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKY 629 (1170)
Q Consensus 578 ~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~ 629 (1170)
..+++++.+|..+|.|....--+..-|+=|.+.+.+...|++.|+.+|-+..
T Consensus 476 a~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~~ 527 (583)
T KOG3809|consen 476 AEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQNE 527 (583)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHhH
Confidence 3456788888889988888877777778888888899999999998886433
No 482
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=93.31 E-value=2.4 Score=49.95 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHH
Q 001058 624 KYEEKYKQSGDVASKLTLE--EATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKIL 690 (1170)
Q Consensus 624 KYEE~~KQISELqsqIA~L--EAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL 690 (1170)
.+++...++..|..+|..+ +..|...+.++.+|++.|.. .++.+|+..+.+|+.|...|
T Consensus 328 ~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~~--------a~~~~L~~~~~rL~~l~~rL 388 (438)
T PRK00286 328 RLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRR--------AMRRQLKRKRQRLEALAQQL 388 (438)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443322 33444444444444444443 23333555555555554444
No 483
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=93.30 E-value=1.4 Score=43.50 Aligned_cols=89 Identities=20% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-----------------------------------
Q 001058 569 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSG----------------------------------- 613 (1170)
Q Consensus 569 L~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsa----------------------------------- 613 (1170)
+.+|..++..++++++.++.++..|.....+... +.+.++.+..
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~-~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~ 79 (129)
T cd00584 1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQ-AKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGY 79 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCE
Q ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 614 -----DKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQ 658 (1170)
Q Consensus 614 -----LKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqq 658 (1170)
+...++-++.+++.+.+++.+|+..|..++.++..++..++++.+
T Consensus 80 ~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~ 129 (129)
T cd00584 80 YVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQQ 129 (129)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 484
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.29 E-value=5.1 Score=52.25 Aligned_cols=148 Identities=11% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHhcHHHHHHHHHHHHH
Q 001058 549 KEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDN-RLNEITERVSGDKREVELLAKKYEE 627 (1170)
Q Consensus 549 ~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~ed-ELneI~eEvsaLKrEIEsLrqKYEE 627 (1170)
......+...+.+++....++..++.++...+..+.. +.+++++......+.. .+.....++..++.+++....+++.
T Consensus 399 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 477 (1042)
T TIGR00618 399 CKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQEL-QQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQT 477 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001058 628 KYKQSGDVASK-----------------------------------------LTLEEATFRDIQEKKMELYQAILKMEGE 666 (1170)
Q Consensus 628 ~~KQISELqsq-----------------------------------------IA~LEAeLQDIQeQ~~eLqqALqkLE~r 666 (1170)
+.+.+...++. +.....++.+++.++.+++..+..++.+
T Consensus 478 ~~~~~~~~~~~~~~~~~r~~l~~~~~cplcgs~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~ql~~l~~q 557 (1042)
T TIGR00618 478 KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQ 557 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001058 667 SGDGTLQQHADHIQNELEELVKILNDRCKQYGL 699 (1170)
Q Consensus 667 ~edA~LQeRIkqiQ~kLeELEKaL~Earqq~GL 699 (1170)
. ..|++++.+++.+|..|+...++.+....+
T Consensus 558 ~--~~lq~ql~ql~~ql~~l~q~wqe~~~~l~~ 588 (1042)
T TIGR00618 558 R--ASLKEQMQEIQQSFSILTQCDNRSKEDIPN 588 (1042)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
No 485
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=93.28 E-value=4.2 Score=42.79 Aligned_cols=128 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 570 EELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELL-AKKYEEKYKQSGDVASKLTLEEATFRD 648 (1170)
Q Consensus 570 ~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsL-rqKYEE~~KQISELqsqIA~LEAeLQD 648 (1170)
...++-+.-+++=+..--..+..--..+...++..-.....++++|.|++.+ +.+..++..+...|+..|..++.+|++
T Consensus 19 ~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 19 EQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH---HHHHHHHHhCCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 001058 649 IQEKKME---LYQAILKMEGESGDGTLQQHADHIQNELE-ELVKILNDRCKQY 697 (1170)
Q Consensus 649 IQeQ~~e---LqqALqkLE~r~edA~LQeRIkqiQ~kLe-ELEKaL~Earqq~ 697 (1170)
-=.++.. |.=.+.+.+-+.+...++.+|++++++|+ ++...+.+.-..+
T Consensus 99 ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 99 EINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=93.28 E-value=0.74 Score=55.61 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 001058 565 ADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDV--ASKLTLE 642 (1170)
Q Consensus 565 aqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISEL--qsqIA~L 642 (1170)
+..-+.+|++++..++...+.+...+--|......+..+++-...++..+++|+...-.--|+...+.+.+ +.+++.+
T Consensus 18 l~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~~~~~peke~~~~~~~~~~n~m~~l 97 (531)
T PF15450_consen 18 LEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARVQLQDSELMQLRQEVKQRAQVPEKEACEPSSIQNQNQMQQL 97 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCCCccchhhHHhh
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 643 EATFRDIQEKKME--LYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRC 694 (1170)
Q Consensus 643 EAeLQDIQeQ~~e--LqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Ear 694 (1170)
...|.++++++.+ -.+++++.+..+....+-.||..++..|.+-++.+.++|
T Consensus 98 D~rLvevre~L~~irr~q~~q~~erk~~~qe~~~rl~~L~~~Lrqee~~re~a~ 151 (531)
T PF15450_consen 98 DKRLVEVREALTQIRRKQALQDSERKGSEQEAGLRLSKLQDMLRQEEQGREDAC 151 (531)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
No 487
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=93.27 E-value=1.5 Score=52.43 Aligned_cols=122 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001058 549 KEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEK 628 (1170)
Q Consensus 549 ~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~ 628 (1170)
.+-+...+.-+++.| +-|++|...+ ......-++.+|+...+++.+.+..+..+|.+..-+
T Consensus 215 edA~~ia~aLL~~sE---~~VN~Ls~ra----------------r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvl 275 (434)
T PRK15178 215 KQAEFFAQRILSFAE---QHVNTVSARM----------------QKERILWLENDVKSAQENLGAARLELLKIQHIQKDI 275 (434)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 001058 629 --YKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILN 691 (1170)
Q Consensus 629 --~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~ 691 (1170)
.+++..+-..|+.||.+|.+++.++..|...+.. +--.-..|+.||.-++.+|+++...+.
T Consensus 276 DP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p--~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 276 DPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLD--QNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCchhHHHHHHHHHHHHHHHHHHHhh
No 488
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=1.7 Score=43.88 Aligned_cols=90 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----------------hcHHHHHHHHHHHHHHHHH
Q 001058 568 KVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS----------------GDKREVELLAKKYEEKYKQ 631 (1170)
Q Consensus 568 KL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvs----------------aLKrEIEsLrqKYEE~~KQ 631 (1170)
.+.++-++++.++++++.+-.+.+.|.+....++.-|+++ +.+. ....-++.|+.+.|-+...
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~El-e~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~r 85 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEEL-EKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELR 85 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 632 SGDVASKLTLEEATFRDIQEKKMELYQ 658 (1170)
Q Consensus 632 ISELqsqIA~LEAeLQDIQeQ~~eLqq 658 (1170)
|.-|+++...++.+|+.+|.++..+..
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
No 489
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=93.23 E-value=3 Score=45.47 Aligned_cols=112 Identities=14% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 569 VEELEKEILTSREKIQFCSTKMQELI-----------LYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVAS 637 (1170)
Q Consensus 569 L~ELEaEI~~lreEIE~lrtQMQELq-----------m~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqs 637 (1170)
+.+.+.-+.+..-.+++...++..|. .++..+++.+..+..+++++|++|+.+-.+=. .+=.++..
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK---~~Q~~~~~ 175 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERK---RRQEEAGE 175 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 001058 638 KLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILND 692 (1170)
Q Consensus 638 qIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~E 692 (1170)
+|..||.++.++-.+.-+++.|...|+ .+|++.+.+..++++...+
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le---------~ei~~l~~~~~~~~~~~~~ 221 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELE---------QEIEQLKRKAAELKENQQQ 221 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhccccC
No 490
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=93.22 E-value=3.8 Score=46.12 Aligned_cols=129 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHH-----HHHHhcHHHHHHHHHHHHH-HHHHH
Q 001058 560 KEATEADKKVEELEKEILTSREKIQ-FCSTKMQELILYKSRCDNRLNEIT-----ERVSGDKREVELLAKKYEE-KYKQS 632 (1170)
Q Consensus 560 qEAEEaqKKL~ELEaEI~~lreEIE-~lrtQMQELqm~kqR~edELneI~-----eEvsaLKrEIEsLrqKYEE-~~KQI 632 (1170)
+.||.+-..+.++..++..+.+.+. ..+.+++........+..+|.... ..+...+..++.++.+++. ....+
T Consensus 136 aaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~~~~l 215 (319)
T PF02601_consen 136 AAAELIVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAIQQKL 215 (319)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 001058 633 GDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILN 691 (1170)
Q Consensus 633 SELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~ 691 (1170)
...+.+|..+...|........ +++....+..-. ..|+..+.+.+.+|+.|.+.|.
T Consensus 216 ~~~~~~L~~l~~~l~~~~~~~~-l~~~~~~~~~l~--~~~~~~l~~~~~~l~~~~~~L~ 271 (319)
T PF02601_consen 216 QRKRQRLQNLSNRLKRQSPQQK-LNQQRQQLQRLQ--KRLQRKLSQKRQRLERLEARLE 271 (319)
T ss_pred HHHHHHHHHHHHhhhhhhhhhH-HHHHHHHhhhhh--HHHhhhhHHHHHHHHHHHHHHH
No 491
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=93.19 E-value=0.15 Score=59.15 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHH----HHH
Q 001058 546 QLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREV----ELL 621 (1170)
Q Consensus 546 qls~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEI----EsL 621 (1170)
+....|.+...++++|... +++..+.....+...++.-+...+++|..........+.++..++..++..+ +.|
T Consensus 65 et~~KE~~~~eKe~kE~~~--K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l 142 (370)
T PF02994_consen 65 ETPEKELKNKEKELKENII--KNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESL 142 (370)
T ss_dssp -------------------------------------------------------H------------------------
T ss_pred hhhhhhhhhhhhhhhHhhh--hhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001058 622 AKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGE 666 (1170)
Q Consensus 622 rqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r 666 (1170)
..+++++...|++|+..|..++..++++.+++..|.+.|.+|+++
T Consensus 143 ~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 143 NSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
No 492
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=93.19 E-value=0.068 Score=61.19 Aligned_cols=120 Identities=12% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 559 LKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGDVASK 638 (1170)
Q Consensus 559 rqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISELqsq 638 (1170)
+.+..+++..++.|...|..+..+|--+...|+.+.........+|+++..+|+.++..+..|...+..+...|.+.+..
T Consensus 34 ~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ss 113 (326)
T PF04582_consen 34 RERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSS 113 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHH
Q 001058 639 LTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQ 680 (1170)
Q Consensus 639 IA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ 680 (1170)
|..|...++.+...+.+|+..+..+.-.= ..||.|++.+.
T Consensus 114 IS~Lqs~v~~lsTdvsNLksdVSt~aL~I--tdLe~RV~~LE 153 (326)
T PF04582_consen 114 ISDLQSSVSALSTDVSNLKSDVSTQALNI--TDLESRVKALE 153 (326)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhcchH--hhHHHHHHHHh
No 493
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=93.17 E-value=2 Score=50.08 Aligned_cols=129 Identities=17% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHH-----HHHHHHhhhhhHHHHHHHHHHhcHHH
Q 001058 559 LKEATEADKKVEELEKEILT----------------SREKIQFCSTKMQ-----ELILYKSRCDNRLNEITERVSGDKRE 617 (1170)
Q Consensus 559 rqEAEEaqKKL~ELEaEI~~----------------lreEIE~lrtQMQ-----ELqm~kqR~edELneI~eEvsaLKrE 617 (1170)
++.+.+++++|..||+-|.. +..-|+.+..|+. .|..-..|+.. |....++|++.|+.
T Consensus 208 la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~-L~~~~~~l~~~~~~ 286 (388)
T PF04912_consen 208 LARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKS-LLSELEELAEKRKE 286 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHHHHHhcccc
Q ss_pred H-HHH--HHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 001058 618 V-ELL--AKKYEEKY---------------------------KQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGES 667 (1170)
Q Consensus 618 I-EsL--rqKYEE~~---------------------------KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~ 667 (1170)
+ +.. +.|+++++ .+..+....|..+|....+++.++.+.+..|.+++..
T Consensus 287 ~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~- 365 (388)
T PF04912_consen 287 AKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK- 365 (388)
T ss_pred ccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHH
Q 001058 668 GDGTLQQHADHIQNELEELVKILNDR 693 (1170)
Q Consensus 668 edA~LQeRIkqiQ~kLeELEKaL~Ea 693 (1170)
+++-++.++..++.||+-+...
T Consensus 366 ----~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 366 ----FKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhcc
No 494
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=93.16 E-value=0.026 Score=67.65 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hcHHHHHHHH
Q 001058 544 MDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS-GDKREVELLA 622 (1170)
Q Consensus 544 Lnqls~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvs-aLKrEIEsLr 622 (1170)
++.+..+.+...+..+++.++.++ .+.||..|+++|....++|.|-+...---++.++.|..+-. +|+..-++|+
T Consensus 350 M~~~s~D~E~~~~~~~~~~~~~e~----YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr 425 (495)
T PF12004_consen 350 MNHLSADIEGKLKEYRESMKEVEK----YEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLR 425 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccccchhhhhhcccchhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 623 KKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQY 697 (1170)
Q Consensus 623 qKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~ 697 (1170)
++-+|+..|++.+-.+|...|.||+.=+.++..+-++-+++-+..+.. |.-+..--.-|.-+|++.+++|
T Consensus 426 ~QQ~eKd~qmksII~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~-----i~~Ldaan~Rl~sal~~lk~ry 495 (495)
T PF12004_consen 426 RQQEEKDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKR-----IAALDAANSRLMSALTQLKERY 495 (495)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHhhhhHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchHHHHHhhhh-----ccccccccccccccccccccCC
No 495
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=93.11 E-value=3.2 Score=47.13 Aligned_cols=134 Identities=25% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---hcHHHHHHH--H
Q 001058 549 KEEQESLNAKLKEATEADKKVEELEKEI-LTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS---GDKREVELL--A 622 (1170)
Q Consensus 549 ~EEe~~LnserqEAEEaqKKL~ELEaEI-~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvs---aLKrEIEsL--r 622 (1170)
+++++.||.+++++-.+...+.+-...+ +....+....+.+.|||.........++.+..++-. +-+.|+|.| .
T Consensus 291 rqeeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerqekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra 370 (445)
T KOG2891|consen 291 RQEEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERA 370 (445)
T ss_pred hhhHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 623 KKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQY 697 (1170)
Q Consensus 623 qKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~ 697 (1170)
.+-++-.+-++-+.++| ..-+++.-|++.+.|++++++ |++++.++.+-|.+|..+.-+.
T Consensus 371 ~kr~egvkllkf~feki--eareerrkqkeeeklk~e~qk-------------ikeleek~~eeedal~~all~~ 430 (445)
T KOG2891|consen 371 RKREEGVKLLKFEFEKI--EAREERRKQKEEEKLKAEEQK-------------IKELEEKIKEEEDALLLALLNL 430 (445)
T ss_pred HHHHHhHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhh
No 496
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=93.11 E-value=7.6 Score=38.28 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred HhhhcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhhhhHHHHHHHH
Q 001058 544 MDQLSKEEQESLNAKLKEATEADKKVEELEKEILTSREKIQFCST-------------KMQELILYKSRCDNRLNEITER 610 (1170)
Q Consensus 544 Lnqls~EEe~~LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrt-------------QMQELqm~kqR~edELneI~eE 610 (1170)
|-++....++.+...+..+. .++...+.++..+.+....|.. .+.....+..++...+......
T Consensus 7 vl~lr~~~ed~a~~~la~~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~~ 83 (141)
T TIGR02473 7 LLDLREKEEEQAKLELAKAQ---AEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQE 83 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 611 VSGDKREVELLAKKYEEKYKQSGDVASKLTLEEATFRDIQEKKMELY 657 (1170)
Q Consensus 611 vsaLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQDIQeQ~~eLq 657 (1170)
+..++.+++..+.++.+..++.+.|+.-+.....+.+....+.++..
T Consensus 84 l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek~~~~~~~~~~r~EQk~ 130 (141)
T TIGR02473 84 LALLQQEVEAKRERLLEARRELKALEKLKEKKQKEYRAEEAKREQKE 130 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.07 E-value=0.74 Score=55.25 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001058 569 VEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS-GDKREVELLAKKYEEKYKQSGDVASKLTLEEATFR 647 (1170)
Q Consensus 569 L~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvs-aLKrEIEsLrqKYEE~~KQISELqsqIA~LEAeLQ 647 (1170)
|..|-.++..++.+++.+..+=+.|..++.|+..+.+++..+|. ++..+.++|+++.++++.++.+++..|+.|..+|.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HH
Q 001058 648 DI 649 (1170)
Q Consensus 648 DI 649 (1170)
.+
T Consensus 141 ~~ 142 (472)
T TIGR03752 141 GV 142 (472)
T ss_pred hc
No 498
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=93.06 E-value=1.4 Score=42.23 Aligned_cols=93 Identities=22% Similarity=0.288 Sum_probs=0.0
Q ss_pred hhHHHHhhhcHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 001058 539 LEKHLMDQLSKEEQESLNAK------LKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVS 612 (1170)
Q Consensus 539 LDd~lLnqls~EEe~~Lnse------rqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvs 612 (1170)
||-.++.+.-...+..+... +.++-+++.+..++..+++.++.+...+.+++.++.... .+..+++++++
T Consensus 2 LDik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~ 77 (108)
T PF02403_consen 2 LDIKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVK 77 (108)
T ss_dssp -SHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHH
T ss_pred CCHHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHH
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHH
Q 001058 613 GDKREVELLAKKYEEKYKQSGDV 635 (1170)
Q Consensus 613 aLKrEIEsLrqKYEE~~KQISEL 635 (1170)
.++.++..++.++.++..++..+
T Consensus 78 ~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 78 ELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=93.06 E-value=4.6 Score=45.75 Aligned_cols=130 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 001058 555 LNAKLKEATEADKKVEELEKEILTSREKIQFCSTKMQELILYKSRCDNRLNEITERVSGDKREVELLAKKYEEKYKQSGD 634 (1170)
Q Consensus 555 LnserqEAEEaqKKL~ELEaEI~~lreEIE~lrtQMQELqm~kqR~edELneI~eEvsaLKrEIEsLrqKYEE~~KQISE 634 (1170)
+..+..++..+..--.|+...=..|=+-+...-..-.......+|.-+ |+++... +|.-++.++.++++.+++|..
T Consensus 112 l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e-~~~iE~~---l~~ai~~~~~~~~~~~~~l~~ 187 (267)
T PF10234_consen 112 LSSKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLE-LNEIEKA---LKEAIKAVQQQLQQTQQQLNN 187 (267)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcC-HHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001058 635 VASKLTLEEATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNELEELVKILNDRCKQY 697 (1170)
Q Consensus 635 LqsqIA~LEAeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~kLeELEKaL~Earqq~ 697 (1170)
|.+.-+.||+.|+..+.+++..++-|+.|+..+ =-+-.++|.||+.|++.=+.|
T Consensus 188 l~~de~~Le~KIekkk~ELER~qKRL~sLq~vR---------PAfmdEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 188 LASDEANLEAKIEKKKQELERNQKRLQSLQSVR---------PAFMDEYEKLEEELQKLYEIY 241 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------hHHHHHHHHHHHHHHHHHHHH
No 500
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=93.05 E-value=3.2 Score=46.94 Aligned_cols=124 Identities=11% Similarity=0.167 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-------------HHHHHHhhhhhHHHHHHHHHHhcHHHHHHHH
Q 001058 557 AKLKEATEADKKVEELEKEI-LTSREKIQFCSTKMQ-------------ELILYKSRCDNRLNEITERVSGDKREVELLA 622 (1170)
Q Consensus 557 serqEAEEaqKKL~ELEaEI-~~lreEIE~lrtQMQ-------------ELqm~kqR~edELneI~eEvsaLKrEIEsLr 622 (1170)
.+++.+-.+-.+|.+.=+.+ +-|..|++.-....+ .|.........++..+...+..++.+...|+
T Consensus 117 ~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le 196 (267)
T PF10234_consen 117 QDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLE 196 (267)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH
Q 001058 623 KKYEEKYKQSGDVASKLTLEE-------ATFRDIQEKKMELYQAILKMEGESGDGTLQQHADHIQNE 682 (1170)
Q Consensus 623 qKYEE~~KQISELqsqIA~LE-------AeLQDIQeQ~~eLqqALqkLE~r~edA~LQeRIkqiQ~k 682 (1170)
.|++.++.++.-.+..|+.|+ .++..+.+++..|.+.|.. .-.+-..|+.+|++++..
T Consensus 197 ~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~--kfRNl~yLe~qle~~~~~ 261 (267)
T PF10234_consen 197 AKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVE--KFRNLDYLEHQLEEYNRR 261 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHH
Done!