Your job contains 1 sequence.
>001060
MDPNAVMQQAPGVGAPGSGDNVATSENEAMGSSQAAGYNSMNGNVVNEAGNATSTENGTS
LGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKI
RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI
NTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ
LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTS
KPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWH
NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF
VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF
SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA
LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLI
KKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNP
WAAGYGVQPQTWPPATQAQAQQWNQQAAYGAYSAYGSSYPTPQTSVPQNAAYGAYPPAYP
AQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA
IEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDE
EPVYQHPAPVLSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSVHIEDDATDNY
SLPEQQQDEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEPQRKTYASIL
RVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFE
AVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAF
VEFEDISGVQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSYQTDAPRGRFG
GRGLGRGSAQDGGDYNRSRGNGFYQRGSQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001060
(1169 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2170453 - symbol:PRP39-2 species:3702 "Arabido... 1117 3.3e-115 2
TAIR|locus:2172472 - symbol:AT5G43960 species:3702 "Arabi... 619 3.4e-106 2
ZFIN|ZDB-GENE-030616-420 - symbol:prpf39 "PRP39 pre-mRNA ... 729 5.5e-72 1
UNIPROTKB|F1PV57 - symbol:PRPF39 "Uncharacterized protein... 725 1.6e-71 1
UNIPROTKB|F1SI15 - symbol:PRPF39 "Uncharacterized protein... 724 2.1e-71 1
RGD|1308702 - symbol:Prpf39 "PRP39 pre-mRNA processing fa... 722 3.7e-71 1
UNIPROTKB|E1C8G8 - symbol:PRPF39 "Uncharacterized protein... 720 6.4e-71 1
UNIPROTKB|Q86UA1 - symbol:PRPF39 "Pre-mRNA-processing fac... 711 6.9e-70 1
MGI|MGI:104602 - symbol:Prpf39 "PRP39 pre-mRNA processing... 693 7.5e-68 1
POMBASE|SPBC4B4.09 - symbol:usp105 "U1 snRNP-associated p... 641 4.3e-62 1
ASPGD|ASPL0000046692 - symbol:AN1635 species:162425 "Emer... 376 1.7e-61 2
FB|FBgn0039600 - symbol:CG1646 species:7227 "Drosophila m... 352 1.2e-58 2
UNIPROTKB|A8E4M9 - symbol:PRPF39 "Uncharacterized protein... 558 4.5e-53 1
UNIPROTKB|D4A0B1 - symbol:D4A0B1 "Uncharacterized protein... 531 3.7e-50 1
TAIR|locus:2173567 - symbol:AT5G60980 species:3702 "Arabi... 265 2.4e-38 2
UNIPROTKB|E2RPB9 - symbol:PRPF39 "Uncharacterized protein... 400 4.4e-36 1
DICTYBASE|DDB_G0283307 - symbol:prpf39 "pre-mRNA processi... 415 1.6e-34 3
WB|WBGene00017768 - symbol:F25B4.5 species:6239 "Caenorha... 232 3.1e-33 2
UNIPROTKB|G4MRU5 - symbol:MGG_04558 "Pre-mRNA-processing ... 343 6.8e-28 1
TAIR|locus:2152566 - symbol:AT5G48650 species:3702 "Arabi... 207 1.1e-27 2
SGD|S000004509 - symbol:PRP39 "U1 snRNP protein involved ... 244 2.8e-24 2
TAIR|locus:2023854 - symbol:AT1G13730 species:3702 "Arabi... 206 6.1e-23 2
POMBASE|SPBP8B7.11 - symbol:nxt3 "ubiquitin protease cofa... 253 3.4e-21 3
TAIR|locus:2098555 - symbol:AT3G07250 species:3702 "Arabi... 178 2.2e-20 2
ASPGD|ASPL0000013038 - symbol:AN8268 species:162425 "Emer... 207 1.4e-19 2
TAIR|locus:2026423 - symbol:AT1G69250 species:3702 "Arabi... 170 4.3e-19 2
UNIPROTKB|I3LPH5 - symbol:G3BP2 "Uncharacterized protein"... 198 6.3e-17 2
UNIPROTKB|Q2KJ17 - symbol:G3BP2 "GTPase activating protei... 195 1.4e-16 2
RGD|1309571 - symbol:G3bp2 "GTPase activating protein (SH... 194 1.8e-16 2
UNIPROTKB|Q9UN86 - symbol:G3BP2 "Ras GTPase-activating pr... 195 1.9e-16 2
UNIPROTKB|E2QYY6 - symbol:G3BP2 "Uncharacterized protein"... 195 2.2e-16 3
MGI|MGI:2442040 - symbol:G3bp2 "GTPase activating protein... 194 2.5e-16 2
UNIPROTKB|F6XCI1 - symbol:G3BP2 "Uncharacterized protein"... 195 4.0e-16 3
UNIPROTKB|D6RB17 - symbol:G3BP2 "Ras GTPase-activating pr... 195 6.2e-16 2
ZFIN|ZDB-GENE-070112-1972 - symbol:g3bp2 "GTPase activati... 183 7.3e-16 2
UNIPROTKB|E1C769 - symbol:G3BP2 "Uncharacterized protein"... 184 2.0e-15 2
UNIPROTKB|Q32LC7 - symbol:G3BP "Ras GTPase-activating pro... 193 2.4e-15 2
MGI|MGI:1351465 - symbol:G3bp1 "GTPase activating protein... 190 3.1e-15 2
UNIPROTKB|F1RQB6 - symbol:G3BP1 "Uncharacterized protein"... 189 4.0e-15 2
UNIPROTKB|Q13283 - symbol:G3BP1 "Ras GTPase-activating pr... 195 4.7e-15 2
UNIPROTKB|E2RN45 - symbol:G3BP1 "Uncharacterized protein"... 192 7.8e-15 2
ZFIN|ZDB-GENE-040426-2698 - symbol:zgc:56304 "zgc:56304" ... 179 2.2e-14 3
ZFIN|ZDB-GENE-030131-7452 - symbol:g3bp1 "GTPase activati... 184 3.3e-14 2
ZFIN|ZDB-GENE-040426-1997 - symbol:cstf3 "cleavage stimul... 178 4.3e-14 2
UNIPROTKB|Q5ZMN1 - symbol:G3BP1 "Uncharacterized protein"... 190 1.3e-13 3
CGD|CAL0001111 - symbol:PRP42 species:5476 "Candida albic... 163 5.0e-13 3
UNIPROTKB|Q5A014 - symbol:PRP42 "Potential spliceosomal U... 163 5.0e-13 3
DICTYBASE|DDB_G0286645 - symbol:cstf3 "cleavage stimulati... 184 8.2e-13 2
UNIPROTKB|F1LVS8 - symbol:F1LVS8 "Uncharacterized protein... 185 1.3e-12 2
FB|FBgn0015778 - symbol:rin "rasputin" species:7227 "Dros... 183 1.3e-12 2
UNIPROTKB|D6RAC7 - symbol:G3BP2 "Ras GTPase-activating pr... 179 1.9e-12 1
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 143 5.2e-12 2
MGI|MGI:1351825 - symbol:Cstf3 "cleavage stimulation fact... 180 5.2e-12 3
UNIPROTKB|E2R479 - symbol:CSTF3 "Uncharacterized protein"... 176 1.4e-11 3
UNIPROTKB|Q12996 - symbol:CSTF3 "Cleavage stimulation fac... 176 1.4e-11 3
UNIPROTKB|Q5F4A0 - symbol:CSTF3 "Uncharacterized protein"... 176 1.4e-11 3
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 195 1.6e-11 1
UNIPROTKB|E5RJU8 - symbol:G3BP1 "Ras GTPase-activating pr... 167 3.6e-11 1
UNIPROTKB|E5RH42 - symbol:G3BP1 "Ras GTPase-activating pr... 165 5.9e-11 1
UNIPROTKB|Q5HYE9 - symbol:DKFZp313K0921 "Putative unchara... 165 5.9e-11 1
UNIPROTKB|F1NF69 - symbol:SART3 "Uncharacterized protein"... 151 6.8e-11 4
RGD|1311646 - symbol:Sart3 "squamous cell carcinoma antig... 154 9.0e-11 3
UNIPROTKB|E9PLP8 - symbol:CSTF3 "Cleavage stimulation fac... 163 9.6e-11 1
UNIPROTKB|E1BGY7 - symbol:CSTF3 "Uncharacterized protein"... 176 2.3e-10 3
UNIPROTKB|D6RGJ4 - symbol:G3BP2 "Ras GTPase-activating pr... 158 3.3e-10 1
WB|WBGene00006307 - symbol:suf-1 species:6239 "Caenorhabd... 161 3.9e-10 3
UNIPROTKB|D6RBW8 - symbol:G3BP2 "Ras GTPase-activating pr... 156 5.3e-10 1
UNIPROTKB|Q15020 - symbol:SART3 "Squamous cell carcinoma ... 156 7.2e-10 3
UNIPROTKB|E1BWJ0 - symbol:SART3 "Uncharacterized protein"... 160 7.4e-10 2
MGI|MGI:1858230 - symbol:Sart3 "squamous cell carcinoma a... 151 7.6e-10 3
TAIR|locus:2135892 - symbol:EMB140 "EMBRYO DEFECTIVE 140"... 160 1.6e-09 2
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 153 7.2e-09 2
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 137 9.5e-09 2
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 121 9.9e-09 2
UNIPROTKB|B7ZKM0 - symbol:SART3 "Squamous cell carcinoma ... 144 1.1e-08 3
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 136 1.8e-08 2
POMBASE|SPAC6F12.17 - symbol:rna14 "mRNA cleavage and pol... 174 1.8e-08 2
SGD|S000002643 - symbol:PRP42 "U1 snRNP protein involved ... 135 3.7e-08 2
UNIPROTKB|E2QXZ2 - symbol:SART3 "Uncharacterized protein"... 146 3.9e-08 3
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 113 4.3e-08 2
UNIPROTKB|E5RIZ6 - symbol:G3BP1 "Ras GTPase-activating pr... 138 4.4e-08 1
UNIPROTKB|F1RGA7 - symbol:SART3 "Uncharacterized protein"... 139 6.8e-08 3
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 161 7.1e-08 1
UNIPROTKB|D6RE13 - symbol:G3BP2 "Ras GTPase-activating pr... 136 7.3e-08 1
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 158 1.6e-07 1
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 158 1.6e-07 1
UNIPROTKB|F1M2M6 - symbol:F1M2M6 "Uncharacterized protein... 150 1.9e-07 2
ZFIN|ZDB-GENE-040724-10 - symbol:sart3 "squamous cell car... 136 2.1e-07 5
UNIPROTKB|F1NUL7 - symbol:SART3 "Uncharacterized protein"... 146 2.1e-07 4
UNIPROTKB|E5RI46 - symbol:G3BP1 "Ras GTPase-activating pr... 131 2.5e-07 1
UNIPROTKB|E5RIF8 - symbol:G3BP1 "Ras GTPase-activating pr... 131 2.5e-07 1
FB|FBgn0003559 - symbol:su(f) "suppressor of forked" spec... 146 3.5e-07 2
UNIPROTKB|F8VV04 - symbol:SART3 "Squamous cell carcinoma ... 147 3.5e-07 2
UNIPROTKB|D6RBR0 - symbol:G3BP2 "Ras GTPase-activating pr... 126 8.5e-07 1
UNIPROTKB|D6REX8 - symbol:G3BP2 "Ras GTPase-activating pr... 126 8.5e-07 1
FB|FBgn0032680 - symbol:Ntf-2r "Nuclear transport factor-... 125 1.1e-06 1
UNIPROTKB|F8W667 - symbol:SART3 "Squamous cell carcinoma ... 144 1.1e-06 1
DICTYBASE|DDB_G0291836 - symbol:DDB_G0291836 "Squamous ce... 159 1.4e-06 3
FB|FBgn0031145 - symbol:Ntf-2 "Nuclear transport factor-2... 124 1.4e-06 1
DICTYBASE|DDB_G0277957 - symbol:DDB_G0277957 "nuclear tra... 111 1.4e-06 2
WARNING: Descriptions of 30 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2170453 [details] [associations]
symbol:PRP39-2 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 SMART:SM00386 EMBL:CP002688 GO:GO:0005622
GO:GO:0006396 KO:K13217 IPI:IPI00548633 RefSeq:NP_199452.2
UniGene:At.29958 ProteinModelPortal:F4KHG8 SMR:F4KHG8 PRIDE:F4KHG8
EnsemblPlants:AT5G46400.1 GeneID:834683 KEGG:ath:AT5G46400
OMA:HIKLFPH ArrayExpress:F4KHG8 Uniprot:F4KHG8
Length = 1036
Score = 1117 (398.3 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 235/570 (41%), Positives = 339/570 (59%)
Query: 54 STENGTSLGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA 113
+TE T++ + EL D S + + DRL + + DF WT L+ E E +
Sbjct: 3 TTEVRTAVSDKEPLQRSPEL-DSSTDFL--DNDRLKETFSSGALDFDEWTLLISEIETTS 59
Query: 114 -QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172
D+I K+ VYDAFL EFPLC+GYW+KYA H+ ++ +++ VEV+ERAVQ TYSV +W
Sbjct: 60 FPDDIEKLCLVYDAFLLEFPLCHGYWRKYAYHKIKLCTLEDAVEVFERAVQAATYSVAVW 119
Query: 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 232
L YC FA+ Y DP + RLFERGL+++G DY LWDKYIEY QQ+WS +A +Y R
Sbjct: 120 LDYCAFAVAAYEDPHDVSRLFERGLSFIGKDYSCCTLWDKYIEYLLGQQQWSSLANVYLR 179
Query: 233 ILENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQ 292
L+ P ++LD Y+ +F++ AAS L E + E + +EE+
Sbjct: 180 TLKYPSKKLDLYYKNFRKIAAS--LKE-KIKCRIDVNGDLSSDPMEEDLVHTRHTDEEIS 236
Query: 293 PDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 352
E S+ +++A L Y+++ E+ Y+ +++ KI FET IRRPYFHVKPL
Sbjct: 237 IVVRELMGPSSSSAVSKA--LHTYLSIGEQFYQDSRQLMEKISCFETQIRRPYFHVKPLD 294
Query: 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA 412
+L+NWH YL F E GDF+ + LYERCLI CANY E+W RYV +E+ G +LA+ A
Sbjct: 295 TNQLDNWHAYLSFGETYGDFDWAINLYERCLIPCANYTEFWFRYVDFVESKGGRELANFA 354
Query: 413 LARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472
LARA+ FVK IHLF ARFKE GD A A E G +E + K ANME+R
Sbjct: 355 LARASQTFVKSASVIHLFNARFKEHVGDASAASVALSRCGEELGFGFVENVTKKANMEKR 414
Query: 473 LGNLEDAFSLYEQAIAIEK-GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531
LGN E A + Y +A+ GKE+ +T LY Q+SR ++++ +A+ A QIL++ ++V
Sbjct: 415 LGNFEAAVTTYREALNKTLIGKENLETTARLYVQFSRLKYVITNSADDAAQILLEGNENV 474
Query: 532 QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL 591
K LLE L+ + +Q+D L+ ++DK L +DS +A ++EE+S +++EF+
Sbjct: 475 PHCKLLLEELMRLLMMHGGSRQVDLLDPIIDKELSHQADSSDGLSAEDKEEISNLYMEFI 534
Query: 592 GLFGDAQLIKKAEDRHARLFLPHRSTSELR 621
L G ++KA RH +LF PH + ++LR
Sbjct: 535 DLSGTIHDVRKALGRHIKLF-PHSARAKLR 563
Score = 39 (18.8 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 14/67 (20%), Positives = 23/67 (34%)
Query: 702 PQTSVPQNXXXXXXXXXXXXQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTE 761
PQT +PQN Q G + Y + QQ + +Y ++ +
Sbjct: 854 PQTQIPQNPVQSNYQ-----QEGQMQSHEAYNQMWQQYYYSYYYYQQQQQLMSEQPQPNQ 908
Query: 762 SASSMLD 768
+ LD
Sbjct: 909 NPQPQLD 915
>TAIR|locus:2172472 [details] [associations]
symbol:AT5G43960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006810
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 InterPro:IPR018222
PROSITE:PS50177 EMBL:AB006703 HOGENOM:HOG000239086 EMBL:AY080755
EMBL:AY114017 IPI:IPI00523493 RefSeq:NP_199209.1 UniGene:At.24860
ProteinModelPortal:Q9FND0 SMR:Q9FND0 IntAct:Q9FND0 STRING:Q9FND0
PaxDb:Q9FND0 PRIDE:Q9FND0 EnsemblPlants:AT5G43960.1 GeneID:834419
KEGG:ath:AT5G43960 TAIR:At5g43960 eggNOG:NOG295220
InParanoid:Q9FND0 OMA:INSVESW PhylomeDB:Q9FND0
ProtClustDB:CLSN2686872 ArrayExpress:Q9FND0 Genevestigator:Q9FND0
Uniprot:Q9FND0
Length = 450
Score = 619 (223.0 bits), Expect = 3.4e-106, Sum P(2) = 3.4e-106
Identities = 122/181 (67%), Positives = 145/181 (80%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 781
QVGSYFVGQYYQVLQQQPDL+HQFYS+ S IR+DGDSTE+A+S+L IH++V+SLNFTAI
Sbjct: 10 QVGSYFVGQYYQVLQQQPDLIHQFYSEPSRAIRIDGDSTETANSLLHIHNMVMSLNFTAI 69
Query: 782 EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEE 841
E+KTINS+ SW GGVLV+VSGSVKTKEF RR FVQTFFLAPQEKGYFVL+D+F F+DE
Sbjct: 70 EVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLSDVFLFVDEG 129
Query: 842 PVYQHPAPVLSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSVHIEDDATDNYS 901
VY H LSE K + Q + + P+ SDYVLEEEA +YV++V I+DD D YS
Sbjct: 130 TVYYHQPSYLSEIKHEAQLNPPTRHPDPQ---VSDYVLEEEASDYVNAVQIKDDLVDKYS 186
Query: 902 L 902
L
Sbjct: 187 L 187
Score = 466 (169.1 bits), Expect = 3.4e-106, Sum P(2) = 3.4e-106
Identities = 105/220 (47%), Positives = 140/220 (63%)
Query: 953 RKTYASILRVSKSQSTSFVA-TQPSFTKTASTTSDWN-PAPQPTTQQSNYTSSFVPESGV 1010
+ +YASIL+V+K +T VA TQPS+ K++ ++W+ P P+ Q + + + +S
Sbjct: 235 KMSYASILKVAKEAATVPVAATQPSYNKSSQDINEWDQPMRTPSPQLAAPLAP-IQQSNS 293
Query: 1011 SSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR 1070
S+++ + G EA D S G ++ E KSVYVRNLPS ++A EIEEEF+NFG IKPDGVF+R R
Sbjct: 294 STYVSDYGAEAEDGS-GFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTR 352
Query: 1071 KDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPN-XXXXXXXXXXXXXXXX 1129
KDV+GVCYAFVEFED++ V+NAI+ASPI L GRQVYIEERRPN
Sbjct: 353 KDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRGARRGGGRGRGG 412
Query: 1130 YQTDAPXXXXXXXXXXXXXXXXXXDYNRSRGNGFYQRGSQ 1169
Y T+AP DY R RGNG+Y+ G +
Sbjct: 413 YPTEAPRGRFGGRGSGRGNQDGG-DY-RPRGNGYYRGGGR 450
>ZFIN|ZDB-GENE-030616-420 [details] [associations]
symbol:prpf39 "PRP39 pre-mRNA processing factor 39
homolog (yeast)" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
ZFIN:ZDB-GENE-030616-420 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
Gene3D:1.25.40.10 eggNOG:COG5107 EMBL:AL591492 EMBL:BC116540
IPI:IPI00481955 RefSeq:NP_001004520.1 UniGene:Dr.340
ProteinModelPortal:Q1JPZ7 STRING:Q1JPZ7 PRIDE:Q1JPZ7
Ensembl:ENSDART00000061672 GeneID:368864 KEGG:dre:368864 CTD:55015
GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 InParanoid:Q1JPZ7 KO:K13217 OMA:GWVYLLQ
OrthoDB:EOG49GKG9 NextBio:20813235 ArrayExpress:Q1JPZ7 Bgee:Q1JPZ7
Uniprot:Q1JPZ7
Length = 752
Score = 729 (261.7 bits), Expect = 5.5e-72, P = 5.5e-72
Identities = 202/613 (32%), Positives = 309/613 (50%)
Query: 46 VNEAGNATSTENGTSLGIESGA------AAGQELVDGSVPAMSGEEDRLWNIVKANSSDF 99
V EAG S E+ +++ +E AA + P + E +RL +V+ N DF
Sbjct: 108 VKEAGQGDS-ESPSNMELEDAPKEPAEPAAEADPAAPQEPELPTEYERLSKVVEDNPEDF 166
Query: 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE 159
+ W LL+ E+ +++++ R+ +DAF +P CYGYWKKYAD E + G + EVY
Sbjct: 167 NGWVYLLQYVEQ--ENHLLGSRKAFDAFFLHYPYCYGYWKKYADIERKHGYIQMADEVYR 224
Query: 160 RAVQGVTYSVDIWLHYCIFAINTY----GDPET-IRRLFERGLAYVGTDYLSFPLWDKYI 214
R +Q + SVD+WLHY F G+ E+ IR +E + GTD+ S LW+ YI
Sbjct: 225 RGLQAIPLSVDLWLHYITFLRENQDTSDGEAESRIRASYEHAVLACGTDFRSDRLWEAYI 284
Query: 215 EYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR-PLSEL-RTXXXXXXXXXX 272
+E Q + + V IY R+L P Q ++F FK+ S P L
Sbjct: 285 AWETEQGKLANVTAIYDRLLCIPTQLYSQHFQKFKDHVQSNNPKHFLSEEEFVSLRVELA 344
Query: 273 XXXXPS-ETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYIAVREEMYKKAKEF 330
PS + AE +A EE+ P TE P +TE E + K I R+EM+ +
Sbjct: 345 NANKPSGDEDAETEAPGEELPP-GTEDLPDPAKR-VTEIENMRHKVIETRQEMFNHNEHE 402
Query: 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP 390
SK FE I+RPYFHVK L T+L NW YLDF +G +VV L+ERCLIACA Y
Sbjct: 403 VSKRWAFEEGIKRPYFHVKALEKTQLNNWREYLDFELENGTPERVVVLFERCLIACALYE 462
Query: 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450
E+WI+Y +E S S + + +A V + + P +HL A F+EQ G ID AR+ +
Sbjct: 463 EFWIKYAKYLE-SYSTEAVRHIYKKACTVHLPKKPNVHLLWAAFEEQQGSIDEARSILKA 521
Query: 451 VHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA-QYSRF 509
V PGL ++ ++ERR GN+E+A +L + AI G+ S++ Y+ + +R
Sbjct: 522 VEVSV-PGLAMVRLRRVSLERRHGNMEEAEALLQDAIT--NGRNSSES--SFYSVKLARQ 576
Query: 510 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLV--DKFLMS 567
L V ++ +A+++L+++++ + + L L+ E S Q + E + D+ L S
Sbjct: 577 LVKVQKSIGRAKKVLLEAVEKDETNPKLYLNLLELE--YSGDVQQNEAEIIACFDRALSS 634
Query: 568 NSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHRSTSELRKRHAE 626
+ S ++R+ ++FL FG D + A ++H RL S KR AE
Sbjct: 635 SMALESRITFSQRK------VDFLEDFGSDINTLMAAYEQHQRLLAEQESF----KRKAE 684
Query: 627 DFLASERAKMAKS 639
+ AK ++
Sbjct: 685 NGSEEPDAKRQRT 697
>UNIPROTKB|F1PV57 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 CTD:55015 GeneTree:ENSGT00390000005033 KO:K13217
OMA:GWVYLLQ EMBL:AAEX03005706 RefSeq:XP_851059.2
Ensembl:ENSCAFT00000022300 GeneID:480305 KEGG:cfa:480305
Uniprot:F1PV57
Length = 667
Score = 725 (260.3 bits), Expect = 1.6e-71, P = 1.6e-71
Identities = 193/661 (29%), Positives = 312/661 (47%)
Query: 18 SGDNVATSENEAMGSSQAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQEL-VDG 76
+ N +T + + Q+A +++ NV + + N + E+ A +L V
Sbjct: 11 NSSNGSTGNSSEVVVEQSADFSTEIMNVTEMEQSPDGSPNVNATTEENEIANAVDLPVTE 70
Query: 77 SVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG 136
+ E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYG
Sbjct: 71 TEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFIHYPYCYG 128
Query: 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRR 191
YWKKYAD E R ++ + EVY R +Q + SVD+W+HY F T GDPET IR
Sbjct: 129 YWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRG 188
Query: 192 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 251
FE + GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE
Sbjct: 189 TFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEH 248
Query: 252 AASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 311
+ +L T +G + ++ P E + P +TE E
Sbjct: 249 VQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIE 305
Query: 312 ELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG 370
+ + I + +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G
Sbjct: 306 NMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENG 365
Query: 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430
+VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+
Sbjct: 366 THERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHML 424
Query: 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490
A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + AI
Sbjct: 425 WAAFEEQQGNINEARNILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIKNA 483
Query: 491 KGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549
K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 484 KSNNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGD 539
Query: 550 SPKQIDFLEQLVDKFLMSNSDSPSTANAAER-----EELSCVFLEFLGLFGDAQLIKKAE 604
+ + + DK + + ++R E+ + L + + Q + K +
Sbjct: 540 LKQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQ 599
Query: 605 DRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS-QNPWAA 663
D R E +K H ED +S +M A A + Y + QNPW
Sbjct: 600 DSLKRKAENGSEEPEEKKAHTED-TSSSSTQMIDGDLQANQAAYNYSAWYQYNYQNPWNY 658
Query: 664 G 664
G
Sbjct: 659 G 659
>UNIPROTKB|F1SI15 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00390000005033 OMA:GWVYLLQ EMBL:CU570961
Ensembl:ENSSSCT00000005511 Uniprot:F1SI15
Length = 667
Score = 724 (259.9 bits), Expect = 2.1e-71, P = 2.1e-71
Identities = 192/661 (29%), Positives = 312/661 (47%)
Query: 18 SGDNVATSENEAMGSSQAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQEL-VDG 76
+ +N +T + + Q+A +++ NV + + T+ E+ A +L V
Sbjct: 11 NSNNGSTGNSSEVVIEQSADFSTEIMNVTEMEQSPDGSPTVTTTTEENETANTVDLPVTE 70
Query: 77 SVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG 136
+ E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYG
Sbjct: 71 TEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFIHYPYCYG 128
Query: 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRR 191
YWKKYAD E R ++ + EVY R +Q + SVD+W+HY F T GDPET I+
Sbjct: 129 YWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETTSTIKG 188
Query: 192 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 251
FE + GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE
Sbjct: 189 TFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEH 248
Query: 252 AASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 311
+ +L T +G + ++ P E + P +TE E
Sbjct: 249 VQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKKLITEIE 306
Query: 312 ELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG 370
+ + I + +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G
Sbjct: 307 NMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENG 366
Query: 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430
+VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+
Sbjct: 367 THERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHML 425
Query: 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490
A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + AI
Sbjct: 426 WAAFEEQQGNINEARNILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAERLLQDAIKNA 484
Query: 491 KGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549
K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 485 KANNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGD 540
Query: 550 SPKQIDFLEQLVDKFLMSNSDSPSTANAAER-----EELSCVFLEFLGLFGDAQLIKKAE 604
+ + + DK + + ++R E+ + L + + Q + K +
Sbjct: 541 LKQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQ 600
Query: 605 DRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS-QNPWAA 663
D R E +K H ED S +M A A + Y + QNPW
Sbjct: 601 DSLKRKAENGSEEPEEKKAHTED--TSSSTQMIDGDLQANQAAYNYSAWYQYNYQNPWNY 658
Query: 664 G 664
G
Sbjct: 659 G 659
>RGD|1308702 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 RGD:1308702
GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10 CTD:55015
GeneTree:ENSGT00390000005033 KO:K13217 OrthoDB:EOG49GKG9
IPI:IPI00948194 RefSeq:XP_003750219.1 RefSeq:XP_003754228.1
UniGene:Rn.12521 Ensembl:ENSRNOT00000066702 GeneID:314171
KEGG:rno:314171 UCSC:RGD:1308702 ArrayExpress:D4A5S9 Uniprot:D4A5S9
Length = 664
Score = 722 (259.2 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 197/653 (30%), Positives = 312/653 (47%)
Query: 20 DNVATSENEAMGSSQAA--GYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGS 77
D S+N + G+S + + ++N S + S+ + + VD
Sbjct: 7 DEYRNSDNGSTGNSSEVVIEHPDFSTEIMNVTEMEQSPDASPSVRVSTEENEMANAVDLP 66
Query: 78 VPAMSG----EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL 133
V G E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P
Sbjct: 67 VTETEGNFPPEFEKFWKTVETNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFIHYPY 124
Query: 134 CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET--- 188
CYGYWKKYAD E R ++ + EVY R +Q + SVD+W+HY F T GDPET
Sbjct: 125 CYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNST 184
Query: 189 IRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF 248
IR FE + GTD+ S LW+ YI +E Q V +Y RIL P Q +F F
Sbjct: 185 IRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRF 244
Query: 249 KEFAASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLT 308
KE + +L T G + ++ P E + P +T
Sbjct: 245 KEHVQNNLPRDLLTGEQFIQLRRELASVNGHNGDDGPPGDD--LPSGIEDITDPAKL-IT 301
Query: 309 EAEELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE 367
E E + + I + +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F
Sbjct: 302 EIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEI 361
Query: 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 427
+G +VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA V + + P
Sbjct: 362 ENGTHERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTVHLPKKPMA 420
Query: 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 487
H+ A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + AI
Sbjct: 421 HMLWAAFEEQQGNINEARIILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAI 479
Query: 488 AIEKGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 546
K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 480 RNAKSNNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEMEY 535
Query: 547 IQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAED 605
+ + + DK + + ++R+ +EFL FG D + A D
Sbjct: 536 SCDLKQNEENILNCFDKAIHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYD 589
Query: 606 RHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQ 658
H L L + T KR AE+ SE + K+++ S AQ + G ++Q
Sbjct: 590 EHQTL-LKEQDTL---KRKAEN--GSEEPEEKKAHTEDVSSAQIIDGDLQANQ 636
>UNIPROTKB|E1C8G8 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 OMA:GWVYLLQ
EMBL:AADN02004089 IPI:IPI00598251 Ensembl:ENSGALT00000020376
Uniprot:E1C8G8
Length = 628
Score = 720 (258.5 bits), Expect = 6.4e-71, P = 6.4e-71
Identities = 184/574 (32%), Positives = 284/574 (49%)
Query: 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE 145
D+ W +V+ N DF+ W LL+ E+ ++++ R+ +D F +P CYGYWKKYAD E
Sbjct: 42 DKFWKVVEDNPQDFTGWVYLLQYVEQ--ENHLPAARKAFDKFFTHYPYCYGYWKKYADLE 99
Query: 146 ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG--DPE---TIRRLFERGLAYV 200
R ++ + EVY R +Q + SVD+W+HY F +T DPE TIR +E +
Sbjct: 100 RRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKDTLDPDDPEANSTIRGAYEHAVLAA 159
Query: 201 GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSEL 260
GTD+ S LW+ YI +E Q V IY RIL P Q +F FK+ + +L
Sbjct: 160 GTDFRSDRLWEMYINWEDEQGNLREVTSIYDRILGIPTQLYSHHFQRFKDHVQNNLPRDL 219
Query: 261 RTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYIAV 319
T G + A ++ P TE + P +TE E + + I +
Sbjct: 220 LTSEQFIQLRRELASVNGHAGGDASAGDD--LPSGTEDITDPAKL-ITEIENMRHRIIEI 276
Query: 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 379
+EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G +VV L+
Sbjct: 277 HQEMFNHNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLF 336
Query: 380 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 439
ERC+I+CA Y ++WI+Y ME + S++ + +RA + + + P +H+ A F+EQ G
Sbjct: 337 ERCVISCALYEDFWIKYAKYME-NHSIEGVRHVYSRACTIHLPKKPMVHMLWAAFEEQQG 395
Query: 440 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL 499
+ID AR + E GL ++ ++ERR GN+E+A L E+A+ K S
Sbjct: 396 NIDEARRILKTFE-ECILGLAMVRLRRVSLERRHGNMEEAERLLEEAVRNAKSVSESS-- 452
Query: 500 PMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLE 558
YA + +R L V +N KAR++L D+++ + + L L+ E + + +
Sbjct: 453 --FYAIKLARHLFKVQKNLPKARKVLSDAIEIDKENTKLYLNLLEMEYCGDLTQNEENIL 510
Query: 559 QLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHRST 617
DK + + ++R+ +EFL FG D + A D H L L + T
Sbjct: 511 SCFDKAVNGSLSIKMRVTFSQRK------VEFLEDFGSDVNKLLDAYDEHQAL-LKEQDT 563
Query: 618 SELRKRHAEDFLASERAKMAKSYSGAPSPAQSLM 651
KR AE+ SE K + + A + M
Sbjct: 564 L---KRRAEN--GSEEPDEKKMLTDEQTMASAQM 592
>UNIPROTKB|Q86UA1 [details] [associations]
symbol:PRPF39 "Pre-mRNA-processing factor 39" species:9606
"Homo sapiens" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
EMBL:AL121809 CTD:55015 HOGENOM:HOG000010277 HOVERGEN:HBG082194
KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9 EMBL:AK001990 EMBL:BC051886
EMBL:BC125126 EMBL:BC125127 IPI:IPI00789246 IPI:IPI00878754
RefSeq:NP_060392.3 UniGene:Hs.274337 ProteinModelPortal:Q86UA1
SMR:Q86UA1 IntAct:Q86UA1 STRING:Q86UA1 PhosphoSite:Q86UA1
DMDM:223590245 PaxDb:Q86UA1 PRIDE:Q86UA1 Ensembl:ENST00000355765
GeneID:55015 KEGG:hsa:55015 UCSC:uc001wvy.4 UCSC:uc001wwa.1
GeneCards:GC14P045553 H-InvDB:HIX0011621 HGNC:HGNC:20314
HPA:HPA001176 MIM:614907 neXtProt:NX_Q86UA1 PharmGKB:PA142671127
InParanoid:Q86UA1 GenomeRNAi:55015 NextBio:58381
ArrayExpress:Q86UA1 Bgee:Q86UA1 CleanEx:HS_PRPF39
Genevestigator:Q86UA1 GermOnline:ENSG00000185246 Uniprot:Q86UA1
Length = 669
Score = 711 (255.3 bits), Expect = 6.9e-70, P = 6.9e-70
Identities = 182/594 (30%), Positives = 285/594 (47%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYGYWKKYAD
Sbjct: 80 EYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDRFFIHYPYCYGYWKKYAD 137
Query: 144 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLA 198
E R ++ EVY R +Q + SVD+W+HY F T GDPET IR FE +
Sbjct: 138 LEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVL 197
Query: 199 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 258
GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE +
Sbjct: 198 AAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPR 257
Query: 259 ELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYI 317
+L T +G + ++ P E + P +TE E + + I
Sbjct: 258 DLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIENMRHRII 314
Query: 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVK 377
+ +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G +VV
Sbjct: 315 EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVV 374
Query: 378 LYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437
L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+ A F+EQ
Sbjct: 375 LFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQ 433
Query: 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 497
G+I+ AR + E GL ++ ++ERR GNLE+A L + AI K S
Sbjct: 434 QGNINEARNILKTFE-ECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESS 492
Query: 498 TLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 556
YA + +R L + +N K+R++L+++++ + + L L+ E + +
Sbjct: 493 ----FYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEEN 548
Query: 557 LEQLVDKFLMSNSDSPSTANAAER-----EELSCVFLEFLGLFGDAQLIKKAEDRHARLF 611
+ DK + + ++R E+ + L + + Q + K +D R
Sbjct: 549 ILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKA 608
Query: 612 LPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS-QNPWAAG 664
E +K H ED +S +M A + Y + QNPW G
Sbjct: 609 ENGSEEPEEKKAHTEDTTSSS-TQMIDGDLQANQAVYNYSAWYQYNYQNPWNYG 661
>MGI|MGI:104602 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog
(yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 MGI:MGI:104602 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
HOGENOM:HOG000010277 HOVERGEN:HBG082194 OrthoDB:EOG49GKG9
EMBL:AK017379 EMBL:AK154170 EMBL:AK168462 EMBL:BC029153
IPI:IPI00170040 IPI:IPI00761305 UniGene:Mm.283339
ProteinModelPortal:Q8K2Z2 SMR:Q8K2Z2 STRING:Q8K2Z2
PhosphoSite:Q8K2Z2 PaxDb:Q8K2Z2 PRIDE:Q8K2Z2 UCSC:uc007nqw.1
UCSC:uc007nra.1 InParanoid:Q8K2Z2 ChiTaRS:PRPF39
Genevestigator:Q8K2Z2 GermOnline:ENSMUSG00000035597 Uniprot:Q8K2Z2
Length = 665
Score = 693 (249.0 bits), Expect = 7.5e-68, P = 7.5e-68
Identities = 194/654 (29%), Positives = 317/654 (48%)
Query: 18 SGDNVATSENEAMGSSQAAGYNS--MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVD 75
+ DN +T + + + +++ MN + ++ +A+ + + ++ E A + +
Sbjct: 11 NSDNGSTGNSSEVAVVEHPDFSTEIMNVTEMEQSPDASPSAHASTEENEMANAVNLPVTE 70
Query: 76 --GSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL 133
G P E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P
Sbjct: 71 AEGDFPP---EFEKFWKTVEMNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFVHYPY 125
Query: 134 CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET--- 188
CYGYWKKYAD E R ++ + EVY R +Q + SVD+W+HY F T GD ET
Sbjct: 126 CYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLEPGDQETNTT 185
Query: 189 IRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF 248
IR FE + GTD+ S LW+ YI +E Q V +Y RIL P Q +F F
Sbjct: 186 IRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRF 245
Query: 249 KEFAASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLT 308
KE + +L T +G + ++ P E S P +T
Sbjct: 246 KEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDIS-PAKL-IT 301
Query: 309 EAEELE-KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFI 366
E E + + I + +EM+ + SK FE I+RPYFHVKPL + +NW YL+F
Sbjct: 302 EIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPKKNWKEYLEFE 361
Query: 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426
+G +VV L+ERC+I+CA Y E+WI+Y ME + S++ + +RA V + + P
Sbjct: 362 IENGTHERVVVLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTVHLPKKPM 420
Query: 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 486
H+ A F+EQ G+I+ AR + E GL ++ ++ERR GN+E+A L + A
Sbjct: 421 AHMLWAAFEEQQGNINEARIILRTFE-ECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDA 479
Query: 487 IAIEKGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545
I K S YA + +R L + +N K+R++L+++++ + + L L+ E
Sbjct: 480 IKNAKSNNESS----FYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEME 535
Query: 546 SIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAE 604
+ + + DK + + ++R+ +EFL FG D + A
Sbjct: 536 YSCDLKQNEENILNCFDKAIHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAY 589
Query: 605 DRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQ 658
D H L L + T KR AE+ SE + K+++ S AQ + G ++Q
Sbjct: 590 DEHQTL-LKEQDTL---KRKAEN--GSEEPEEKKAHTEDLSSAQIIDGDLQANQ 637
>POMBASE|SPBC4B4.09 [details] [associations]
symbol:usp105 "U1 snRNP-associated protein Usp105"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC;ISO] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0030627 "pre-mRNA 5'-splice site binding" evidence=ISO]
InterPro:IPR003107 SMART:SM00386 PomBase:SPBC4B4.09 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0457 GO:GO:0000243
GO:GO:0005685 GO:GO:0000395 KO:K13217 PIR:T40481 RefSeq:NP_596426.1
ProteinModelPortal:O74970 EnsemblFungi:SPBC4B4.09.1 GeneID:2540869
KEGG:spo:SPBC4B4.09 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 NextBio:20801985 Uniprot:O74970
Length = 612
Score = 641 (230.7 bits), Expect = 4.3e-62, P = 4.3e-62
Identities = 149/457 (32%), Positives = 232/457 (50%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKL--------AQDNIVKIRRVYDAFLAEFPLCY 135
E D+ + N DF AW L+ +E L ++ I +R VYD FL ++PL +
Sbjct: 13 EWDKYNRQINKNPDDFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLF 72
Query: 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 195
GYWKKYAD E V + +YER + G+ +SVD+W +YC F + T GD +R LF +
Sbjct: 73 GYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQ 132
Query: 196 GLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR 255
G VG D+LS P WDKY+E+E Q+ V + R++ P+ Q RYF F + + S+
Sbjct: 133 GANMVGLDFLSHPFWDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQ 192
Query: 256 PLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315
P+ +L P++ V A +++ + E E E +
Sbjct: 193 PIQQLLPPDVLASIRADVTREPAKV---VSAGSKQITVERGELE--------IEREMRAR 241
Query: 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 375
+ ++++K + +K FE+ I+RPYFHVK L +L NW YLDF E +GDF ++
Sbjct: 242 IYNIHLQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDFQRI 301
Query: 376 VKLYERCLIACANYPEYWIRYVLCMEASGS-MDLAHNALARATHVFVK-RLPEIHLFAAR 433
LYERCLI CA Y E+W RY M A ++ RA+ +F P I + A
Sbjct: 302 CHLYERCLITCALYDEFWFRYARWMSAQPDHLNDVSIIYERASCIFASISRPGIRVQYAL 361
Query: 434 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQAIAIE 490
F+E G+I A+A YQ + T+ PG LEA++ +ERR +L +A ++ I
Sbjct: 362 FEESQGNIASAKAIYQSILTQL-PGNLEAVLGWVGLERRNAPNYDLTNAHAVLRSII--N 418
Query: 491 KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 527
+GK ++ +L + + + + + E AR + + +
Sbjct: 419 EGKCNTGITEVLITEDIKLVWKIEGDIELARNMFLQN 455
>ASPGD|ASPL0000046692 [details] [associations]
symbol:AN1635 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 EMBL:BN001307
GO:GO:0005622 GO:GO:0006396 eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AACD01000026 KO:K13217 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 RefSeq:XP_659239.1 ProteinModelPortal:Q5BCU5
EnsemblFungi:CADANIAT00008273 GeneID:2874721 KEGG:ani:AN1635.2
Uniprot:Q5BCU5
Length = 588
Score = 376 (137.4 bits), Expect = 1.7e-61, Sum P(2) = 1.7e-61
Identities = 74/171 (43%), Positives = 100/171 (58%)
Query: 98 DFSAWTALLEETEKLA-----QDN---IVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG 149
+F W L+ E L N I +R VYD FLA+FPL +GYWKKYAD E +
Sbjct: 29 NFETWERLVRAAEALEGGVNRNSNPQAITTVRNVYDRFLAKFPLLFGYWKKYADLEFSIT 88
Query: 150 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPL 209
+ VYER V ++ SVD+W +YC F T D + IR LFERG VG D+LS P
Sbjct: 89 GTEAADMVYERGVASISSSVDLWTNYCTFKAETSHDTDIIRELFERGANCVGLDFLSHPF 148
Query: 210 WDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSEL 260
WDKYIEYE + + ++ I R++E P+ Q RYF +++ A +RP++EL
Sbjct: 149 WDKYIEYEERVEGYDKIFAILARVIEIPMHQYARYFERYRQLAQTRPVAEL 199
Score = 329 (120.9 bits), Expect = 1.7e-61, Sum P(2) = 1.7e-61
Identities = 106/380 (27%), Positives = 177/380 (46%)
Query: 303 VSAGLTEAEELEKYIAVRE-----EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELE 357
V+ G E+E+ + +R E++ K + +K +E+ I+RPYFHV L +L
Sbjct: 219 VAPGAKADAEIERDLRLRLDGYHLEIFSKTQTETTKRWTYESEIKRPYFHVTELDEGQLA 278
Query: 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARA 416
NW YLDF E +G + ++ LYERCL+ CA+Y E+W RY M A G + N RA
Sbjct: 279 NWRKYLDFEEAEGSYARIQFLYERCLVTCAHYDEFWQRYARWMSAQPGKEEDVRNIYQRA 338
Query: 417 THVFVKRL-PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475
++++V P L A F+E G + A+ ++ + P +E I+ ANM RR G
Sbjct: 339 SYLYVPIANPATRLQYAYFEEMCGRVSVAKEIHEAILINI-PNHVETIVSLANMCRRHGG 397
Query: 476 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535
LE A +Y+ + + + T L A+++R L + + E+ARQ+ + + S+
Sbjct: 398 LEAAIEVYKSQL--DSPQCEMSTKAALVAEWARLLWKIKGSTEEARQVFQKNQQYYLDSQ 455
Query: 536 PLLEALIHFE-----SIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF 590
+ + FE S + Q + ++Q+V+ S S ++N A +L +++ +
Sbjct: 456 AFWHSYLTFELDQPTSAATESAQYERIKQVVEDI---RSKSALSSNVAR--DLVQIYMVY 510
Query: 591 LGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAP----SP 646
L G K+ + P S S+ + E S A + AP +P
Sbjct: 511 LLERGTQDAAKEYMTLDREVHGP-ASVSKAKTGGTEP--VSHTAPQVPPVTPAPPIIPTP 567
Query: 647 AQSLMGAYPSSQNPWAAGYG 666
+ YP Q+P GYG
Sbjct: 568 QVNPYNYYPQ-QSPVNGGYG 586
>FB|FBgn0039600 [details] [associations]
symbol:CG1646 species:7227 "Drosophila melanogaster"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 InterPro:IPR001623 EMBL:AE014297 Gene3D:1.25.40.10
SMART:SM00271 GO:GO:0000398 GO:GO:0000381 eggNOG:COG5107
GO:GO:0005685 GeneTree:ENSGT00390000005033 KO:K13217 EMBL:AY051737
RefSeq:NP_001097957.1 RefSeq:NP_001097958.1 RefSeq:NP_651634.1
RefSeq:NP_733256.2 RefSeq:NP_788753.1 RefSeq:NP_788754.2
UniGene:Dm.31288 ProteinModelPortal:Q7KRW8 SMR:Q7KRW8 IntAct:Q7KRW8
MINT:MINT-820225 STRING:Q7KRW8 PaxDb:Q7KRW8 PRIDE:Q7KRW8
EnsemblMetazoa:FBtr0085322 GeneID:43399 KEGG:dme:Dmel_CG1646
UCSC:CG1646-RB FlyBase:FBgn0039600 InParanoid:Q7KRW8 OMA:IRWENES
OrthoDB:EOG4ZKH2F PhylomeDB:Q7KRW8 GenomeRNAi:43399 NextBio:833726
Bgee:Q7KRW8 Uniprot:Q7KRW8
Length = 1066
Score = 352 (129.0 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 63/166 (37%), Positives = 99/166 (59%)
Query: 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE 145
D+ W VK +S+DF+ WT LL+ + + + R YD FL+ +P CYGYW+KYAD+E
Sbjct: 366 DKYWRAVKEDSTDFTGWTYLLQYVDN--ESDAEAAREAYDTFLSHYPYCYGYWRKYADYE 423
Query: 146 ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPET-IRRLFERGLAYVGTDY 204
R G +V+ER ++ + SVD+W+HY + + +GD ET +R +ER + G ++
Sbjct: 424 KRKGIKANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKACGLEF 483
Query: 205 LSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKE 250
S LWD YI +E + + RV IY R+L P Q + +F +F++
Sbjct: 484 RSDKLWDAYIRWENESKRYHRVVQIYDRLLAIPTQGYNGHFDNFQD 529
Score = 343 (125.8 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 111/360 (30%), Positives = 169/360 (46%)
Query: 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN 373
++ I+ R +++K + FE I+RPYFHVKPL +L+NW +YLDF GD
Sbjct: 663 DRAISARRKVHKLTVSAVTARWSFEEGIKRPYFHVKPLERAQLKNWKDYLDFEIEKGDRE 722
Query: 374 KVVKLYERCLIACANYPEYWI---RYVLCME-ASGSMDLAHNALARATHVFVKRLPEIHL 429
+V+ L+ERCLIACA Y E+W+ RY+ +E SG +DL + RA + P +HL
Sbjct: 723 RVLVLFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVRDVYRRACRIHHPDKPSLHL 782
Query: 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489
A F+E + D A Q + + P LL+ + N+ERR G L+ LY+ I
Sbjct: 783 MWAAFEECQMNFDDAAEILQRID-QRCPNLLQLSYRRINVERRRGALDKCRELYKHYIES 841
Query: 490 EKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549
K K + +L + YA RFL+ + + + L +L+ + + AL +
Sbjct: 842 TKNKGIAGSLAIKYA---RFLNKICHDLDAGLAALQQALERDPANTRV--ALQMIDLCLQ 896
Query: 550 SPKQIDFLE--QLVDKFLMSNSDSPSTANA-AEREELSCVFLEFLGLFGDAQLIKKAEDR 606
PK +D E +++DKF+ P A+R+ +EFL FG + +D
Sbjct: 897 RPK-VDEQEVVEIMDKFMARADIEPDQKVLFAQRK------VEFLEDFGSTA--RGLQDA 947
Query: 607 HARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNPWA-AGY 665
L E +K+ D S K + S P P S AY + + A AGY
Sbjct: 948 QRALQQALTKAKEAQKK--SD--GSPSRKNSSSSKEGPVPTGSAAAAYNNGGSAAAVAGY 1003
Score = 46 (21.3 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 31/154 (20%), Positives = 57/154 (37%)
Query: 11 PGVGAPGSGDNVATSENEAMGSSQAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAG 70
P VG DNV ++ E S MN + + + +A + E+ +
Sbjct: 150 PSVGGNDESDNVKKADFEYNVDSLQPQMEKMNSSEDSSSQHAIA-EDLADADTSNATIVN 208
Query: 71 QELV-DGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLA 129
E+V + +P S E V L E+ E +++D + A
Sbjct: 209 TEIVSEDELPLPSKPEINDAEEVSDEELPAPQRAELPEDAEVISEDELPASNNNNTATEP 268
Query: 130 EFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQ 163
+ PL K+ A++E+ + DK +E + +
Sbjct: 269 KAPL-----KRKAENESVKSTEDKDASSHESSTK 297
Score = 41 (19.5 bits), Expect = 6.3e-27, Sum P(2) = 6.3e-27
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 1081 VEFEDISGVQNAI-QASP--IQLAGRQVYIEERR 1111
+ F+D + + I Q P +QL+ R++ +E RR
Sbjct: 792 MNFDDAAEILQRIDQRCPNLLQLSYRRINVERRR 825
>UNIPROTKB|A8E4M9 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
CTD:55015 GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9
eggNOG:NOG298273 EMBL:DAAA02052958 EMBL:BC149776 IPI:IPI00710325
RefSeq:NP_001103259.1 UniGene:Bt.27128 Ensembl:ENSBTAT00000003373
GeneID:505547 KEGG:bta:505547 InParanoid:A8E4M9 NextBio:20867193
Uniprot:A8E4M9
Length = 548
Score = 558 (201.5 bits), Expect = 4.5e-53, P = 4.5e-53
Identities = 154/510 (30%), Positives = 241/510 (47%)
Query: 157 VYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLAYVGTDYLSFPLWD 211
VY R +Q + SVD+W+HY F T GDPET +R FE + GTD+ S LW+
Sbjct: 30 VYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTVRGTFEHAVLAAGTDFRSDRLWE 89
Query: 212 KYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXXXXX 271
YI +E Q V IY RIL P Q +F FK+ + +L T
Sbjct: 90 MYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKDHVQNNLPRDLLTGEQFIQLRR 149
Query: 272 XXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYIAVREEMYKKAKEF 330
+G + ++ P E + P +TE E + + I + +EM+ +
Sbjct: 150 ELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIENMRHRIIEIHQEMFNYNEHE 206
Query: 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP 390
SK FE I+RPYFHVKPL +L+NW YL+F +G +VV L+ERC+I+CA Y
Sbjct: 207 VSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYE 266
Query: 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450
E+WI+Y ME + S++ + +RA + + + P +H+ A F+EQ G+I+ AR +
Sbjct: 267 EFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRT 325
Query: 451 VHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA-QYSRF 509
E GL ++ ++ERR GN+E+A L ++AI K S YA + +R
Sbjct: 326 FE-ECVLGLAMVRLRRVSLERRHGNMEEAERLLQEAIKNAKSNNESS----FYAIKLARH 380
Query: 510 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 569
L + +N K+R++L+++++ + + L L+ E + D + DK + +
Sbjct: 381 LFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEDNILNCFDKAIHGSL 440
Query: 570 DSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHRSTSELRKRHAEDF 628
++R+ +EFL FG D + A D H L S KR AE+
Sbjct: 441 PIKMRITFSQRK------VEFLEDFGSDVNKLLNAYDEHQTLLKEQDSL----KRKAENG 490
Query: 629 LASERAKMAKSYSGAPSPAQSLMGAYPSSQ 658
K A + S Q + G ++Q
Sbjct: 491 SEEPEEKKAHTEDTTSSSTQMIDGDLQANQ 520
>UNIPROTKB|D4A0B1 [details] [associations]
symbol:D4A0B1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 IPI:IPI00951935
Ensembl:ENSRNOT00000065090 ArrayExpress:D4A0B1 Uniprot:D4A0B1
Length = 426
Score = 531 (192.0 bits), Expect = 3.7e-50, P = 3.7e-50
Identities = 131/396 (33%), Positives = 199/396 (50%)
Query: 157 VYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLAYVGTDYLSFPLWD 211
VY R +Q + SVD+W+HY F T GDPET IR FE + GTD+ S LW+
Sbjct: 30 VYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDKLWE 89
Query: 212 KYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXXXXX 271
YI +E Q V +Y RIL P Q +F FKE + +L T
Sbjct: 90 MYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRR 149
Query: 272 XXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYIAVREEMYKKAKEF 330
G + ++ P E + P +TE E + + I + +EM+ +
Sbjct: 150 ELASVNGHNGDDGPPGDD--LPSGIEDITDPAKL-ITEIENMRHRIIEIHQEMFNYNEHE 206
Query: 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP 390
SK FE I+RPYFHVKPL +L+NW YL+F +G +VV L+ERC+I+CA Y
Sbjct: 207 VSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYE 266
Query: 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450
E+WI+Y ME + S++ + +RA V + + P H+ A F+EQ G+I+ AR +
Sbjct: 267 EFWIKYAKYME-NHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRT 325
Query: 451 VHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA-QYSRF 509
E GL ++ ++ERR GN+E+A L + AI K S YA + +R
Sbjct: 326 FE-ECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIRNAKSNNESS----FYAIKLARH 380
Query: 510 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545
L + +N K+R++L+++++ + + L L+ E
Sbjct: 381 LFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEME 416
>TAIR|locus:2173567 [details] [associations]
symbol:AT5G60980 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
EMBL:AB008269 InterPro:IPR018222 PROSITE:PS50177 HSSP:P33331
EMBL:AY062108 EMBL:BT003010 IPI:IPI00529722 RefSeq:NP_200906.2
UniGene:At.27353 ProteinModelPortal:Q9FME2 SMR:Q9FME2 IntAct:Q9FME2
STRING:Q9FME2 PRIDE:Q9FME2 EnsemblPlants:AT5G60980.2 GeneID:836219
KEGG:ath:AT5G60980 TAIR:At5g60980 HOGENOM:HOG000239086
InParanoid:Q9FME2 OMA:AQESHER PhylomeDB:Q9FME2
ProtClustDB:CLSN2680580 Genevestigator:Q9FME2 Uniprot:Q9FME2
Length = 460
Score = 265 (98.3 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
Identities = 69/177 (38%), Positives = 106/177 (59%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVD-GDSTESASSMLDIHSLVISL---NF 778
VG FV QYY +L Q P LVH+FY D+S + R D + + ++M I+ ++SL ++
Sbjct: 15 VGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILSLKYEDY 74
Query: 779 TAIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 838
TA EI+T ++ S GV+V+V+G + + R+ KF Q+FFLAPQ+KGYFVLND+F FL
Sbjct: 75 TA-EIETADAQESHERGVIVLVTGRLTGNDNVRK-KFSQSFFLAPQDKGYFVLNDVFRFL 132
Query: 839 DEEPVYQHPAPV-LSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSVHIED 894
+E+ V V ++ DVQ +PI + + + + +E E V+S+ ED
Sbjct: 133 EEKEVTAQARSVPINGTTRDVQ----APIEPERVVVSHEPEVEPEP---VASIEEED 182
Score = 224 (83.9 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
Identities = 60/162 (37%), Positives = 87/162 (53%)
Query: 953 RKTYASILRVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSS 1012
+ +YASIL+ KS P+ T A P P P Q+ P + ++
Sbjct: 227 KHSYASILKQMKSSPA------PT-THVARN----KPRPAPVNQKLT-----APPAEPAA 270
Query: 1013 HMPESGFEAVDDSLGLD-EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK 1071
S E V +S +D E + S+YVRNLP T ++EE F+NFG IK +G+ VR+ K
Sbjct: 271 RPEASAHENVPNSSHVDVEDDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNK 330
Query: 1072 DVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPN 1113
G C+ FVEFE SG Q+A++ASP+ + RQ +EE++ N
Sbjct: 331 QQ-GFCFGFVEFETSSGKQSALEASPVTIGDRQAVVEEKKTN 371
>UNIPROTKB|E2RPB9 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
SMART:SM00386 GO:GO:0005622 GO:GO:0006396
GeneTree:ENSGT00390000005033 EMBL:AAEX03005706
Ensembl:ENSCAFT00000022296 Uniprot:E2RPB9
Length = 299
Score = 400 (145.9 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 90/251 (35%), Positives = 128/251 (50%)
Query: 157 VYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLAYVGTDYLSFPLWD 211
VY R +Q + SVD+W+HY F T GDPET IR FE + GTD+ S LW+
Sbjct: 30 VYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDRLWE 89
Query: 212 KYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXXXXX 271
YI +E Q V IY RIL P Q +F FKE + +L T
Sbjct: 90 MYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRR 149
Query: 272 XXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE-KYIAVREEMYKKAKEF 330
+G + ++ P E + P +TE E + + I + +EM+ +
Sbjct: 150 ELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIENMRHRIIEIHQEMFNYNEHE 206
Query: 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP 390
SK FE I+RPYFHVKPL +L+NW YL+F +G +VV L+ERC+I+CA Y
Sbjct: 207 VSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYE 266
Query: 391 EYWIRYVLCME 401
E+WI+ ++C++
Sbjct: 267 EFWIKEMVCLQ 277
>DICTYBASE|DDB_G0283307 [details] [associations]
symbol:prpf39 "pre-mRNA processing factor 39"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
dictyBase:DDB_G0283307 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006397 Gene3D:1.25.40.10 EMBL:AAFI02000052 KO:K13217
eggNOG:NOG298273 RefSeq:XP_639156.1 ProteinModelPortal:Q54R91
EnsemblProtists:DDB0233547 GeneID:8624026 KEGG:ddi:DDB_G0283307
InParanoid:Q54R91 OMA:ADHEYAH Uniprot:Q54R91
Length = 699
Score = 415 (151.1 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 119/388 (30%), Positives = 192/388 (49%)
Query: 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYW 138
P EED+LW IV+ N F+ WT L+ EK ++I KIR+VY FL EFPLC+ YW
Sbjct: 18 PQNLSEEDKLWKIVQTNPLAFNQWTFLIGVIEKT--NDIEKIRKVYSEFLNEFPLCFLYW 75
Query: 139 KKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 198
K++ADHE + + +E++E+AV + +SVDIWL+YC I+ + IR +F+RG+
Sbjct: 76 KRFADHEYAHNNTTQSIEIFEKAVSSIPHSVDIWLNYCTHLIDKSYPVDEIRSVFKRGIN 135
Query: 199 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 258
+GTDY S W+KYIE+E M QE + +A I+ IL+ P++ L + FK+ ++
Sbjct: 136 IIGTDYQSGKFWEKYIEFE-MGQENNELASIFNSILKTPLENLQIFNEKFKDNIDRIKIN 194
Query: 259 ELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 318
++ T +ET V N E+ + E+ SK + + +I
Sbjct: 195 DMLTEEERKEYTGYD----AETKQMVLQNREKWYHETLEKISKRSNFESIVNKRFFFHIQ 250
Query: 319 VREEM-------YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD-- 369
+EM Y E D + E I+ + P E W Y+ F++
Sbjct: 251 PIDEMTLSVWRSYFNYMESDPSVTQ-EEVIKLFERCLVPCCYYS-EFWLKYIKFLQESYV 308
Query: 370 GDF-NKVVK-LYERCL-IACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRLP 425
GD N++++ ++ER I + + Y L +E++ G+++ A + L + L
Sbjct: 309 GDNKNELIESIFERATKIFLKKRADIHLEYSLFVESTLGNIEKAFSILENIHSLLPTHL- 367
Query: 426 EIHLFAARFKEQNGDIDGARAAYQLVHT 453
E+ L FK +N I A ++ V T
Sbjct: 368 EVILRLVSFKRRNHSIQQANQFFKKVLT 395
Score = 285 (105.4 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 106/468 (22%), Positives = 201/468 (42%)
Query: 132 PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIR- 190
PL + W + ++K+ +VY + W FA + Y T +
Sbjct: 35 PLAFNQWTFLIGVIEKTNDIEKIRKVYSEFLNEFPLCFLYWKR---FADHEYAHNNTTQS 91
Query: 191 -RLFERGLAYVGTDYLSFPLWDKY----IEYEYMQQEWSRVAMIYTRILENPIQQLDRYF 245
+FE+ ++ + S +W Y I+ Y E V I+ Q +++
Sbjct: 92 IEIFEKAVSSIPH---SVDIWLNYCTHLIDKSYPVDEIRSVFKRGINIIGTDYQS-GKFW 147
Query: 246 SSFKEFAASRPLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSA 305
+ EF + +EL + + + ++ TE+ K +
Sbjct: 148 EKYIEFEMGQENNELASIFNSILKTPLENLQIFNEKFKDNIDRIKINDMLTEEERKEYTG 207
Query: 306 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAI-RRPYFHVKPLSVTELENWHNYLD 364
+AE + + RE+ Y + E SK FE+ + +R +FH++P+ L W +Y +
Sbjct: 208 --YDAETKQMVLQNREKWYHETLEKISKRSNFESIVNKRFFFHIQPIDEMTLSVWRSYFN 265
Query: 365 FIERDGDFNK--VVKLYERCLIACANYPEYWIRYVLCMEAS----GSMDLAHNALARATH 418
++E D + V+KL+ERCL+ C Y E+W++Y+ ++ S +L + RAT
Sbjct: 266 YMESDPSVTQEEVIKLFERCLVPCCYYSEFWLKYIKFLQESYVGDNKNELIESIFERATK 325
Query: 419 VFVKRLPEIHLFAARFKEQN-GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 477
+F+K+ +IHL + F E G+I+ A + + +H+ P LE I++ + +RR +++
Sbjct: 326 IFLKKRADIHLEYSLFVESTLGNIEKAFSILENIHS-LLPTHLEVILRLVSFKRRNHSIQ 384
Query: 478 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL--HLVSRNAEKARQILVDSL-DHVQLS 534
A +++ + + S+T P L Y FL + S EK + D + D + S
Sbjct: 385 QANQFFKKVLT--SLQSDSKTYPFLSINYISFLLSNKQSLQGEKEGEEEADKIVDVFETS 442
Query: 535 KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREE 582
+ +L+ I S + F+ ++ L S S S+ E+ E
Sbjct: 443 REVLKKSISLYP-DSKLLWLYFINFEINNLLFIISGSGSSEKRIEQIE 489
Score = 41 (19.5 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 459 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493
LL I + E+R+ +E +Y A+ ++K K
Sbjct: 471 LLFIISGSGSSEKRIEQIERIKKVYNIALCLDKNK 505
Score = 37 (18.1 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 544 FESIQSSPKQIDFLEQLVDKFLMSNSDSPS-TAN 576
FES+ K L D L S+S S S T N
Sbjct: 587 FESLYPDGKPESKKRSLTDMNLQSSSSSSSSTTN 620
>WB|WBGene00017768 [details] [associations]
symbol:F25B4.5 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0009792 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GO:GO:0007281 EMBL:FO080538
GeneTree:ENSGT00390000005033 KO:K13217 PIR:T25725
RefSeq:NP_504495.1 ProteinModelPortal:Q22961 SMR:Q22961
STRING:Q22961 PaxDb:Q22961 EnsemblMetazoa:F25B4.5.1
EnsemblMetazoa:F25B4.5.2 GeneID:178955 KEGG:cel:CELE_F25B4.5
UCSC:F25B4.5.1 CTD:178955 WormBase:F25B4.5 eggNOG:NOG298273
HOGENOM:HOG000018990 InParanoid:Q22961 OMA:VLLELRY NextBio:903274
Uniprot:Q22961
Length = 710
Score = 232 (86.7 bits), Expect = 3.1e-33, Sum P(2) = 3.1e-33
Identities = 100/366 (27%), Positives = 156/366 (42%)
Query: 317 IAVREEMY-KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 375
+A R+ +Y K KE + + GFE I+RPYFHVKPL +L NW +YLDF ++G +V
Sbjct: 345 VARRKRIYDKNMKECEIRA-GFEANIKRPYFHVKPLDYPQLFNWMSYLDFEIKEGHEERV 403
Query: 376 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435
L++RCLI C+ Y E+WI+Y + + + + L + F+
Sbjct: 404 KILFDRCLIPCSLYEEFWIKYARWTWKTYKSKTKSREIYMKAKIHCPTSLNLALSESGFE 463
Query: 436 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI-AIEKGKE 494
E + D A E PG + +++ + RR E + E + E
Sbjct: 464 ESVENFDDAIKILDNFREEY-PGYVLLELRYLGVLRRKSEKEGHGAPSEFVMNQYESLIR 522
Query: 495 HSQTLPMLYAQYSRFL---HLVSRNAEK-ARQILVDSLDHVQLSKPLLEALIHFESIQSS 550
SQ+ P L++ YS L H SR K A+++L ++ + L + S
Sbjct: 523 DSQSSPNLHSFYSLKLARYHQKSRRDPKLAQKVLKKAISIDPFNLQLYSQYVDIAYSSES 582
Query: 551 PKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 610
++D ++ D L SN ++R+ L FLE LG + ++ D H L
Sbjct: 583 MSELDVIQSF-DVALDSNLRLEDKVRFSQRK-LD--FLEELG--NNILAVEDHRDFHYNL 636
Query: 611 F--LPHRSTSELRKRHAED----FLASERAKMAKS-YSGA--PSPAQSLMGAYPSSQNPW 661
LP T +R R D LA + Y+ A PA ++M P Q P+
Sbjct: 637 LGQLPDNVT--IRTRFVNDPSRVALAPAMPPQQQMVYAPAIQQQPAMNMMPMMPM-QMPY 693
Query: 662 AAGYGV 667
A V
Sbjct: 694 MASSAV 699
Score = 220 (82.5 bits), Expect = 3.1e-33, Sum P(2) = 3.1e-33
Identities = 45/167 (26%), Positives = 88/167 (52%)
Query: 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE 156
+DF W +L + ++ D++ R Y +FL+ +P CYG+W+KYA++E ++G++ +
Sbjct: 97 ADFDNWVNILAKVDQ--SDDVDFAREKYRSFLSRYPNCYGFWQKYAEYEKKMGNIAEAKA 154
Query: 157 VYERAVQGVTYSVDIWLHYCIFAINTYG-DPETIRRLFERGLAYVGTDYLSFPLWDKYIE 215
V+E+ + + S+D+WL Y N PE++R L+ R + G +Y S LW + I
Sbjct: 155 VWEKGIISIPLSIDLWLGYTADVKNIKNFPPESLRDLYARAIEIAGLEYQSDRLWLEAIG 214
Query: 216 YE---YMQQ--------EWSRVAMIYTRILENPIQQLDRYFSSFKEF 251
+E YM + R+ +++ ++L P +F + ++
Sbjct: 215 FERAVYMDELCKGNTNASCKRIGVLFDKLLSTPTFHAPSHFDRYVQY 261
Score = 37 (18.1 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 510 LHLVSRNAEKARQILVDSLDH 530
L++++ +AE I V+SL H
Sbjct: 312 LNIMTESAEGTFPITVNSLQH 332
>UNIPROTKB|G4MRU5 [details] [associations]
symbol:MGG_04558 "Pre-mRNA-processing factor 39"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:CM001231 KO:K13217
RefSeq:XP_003710923.1 ProteinModelPortal:G4MRU5
EnsemblFungi:MGG_04558T0 GeneID:2677921 KEGG:mgr:MGG_04558
Uniprot:G4MRU5
Length = 586
Score = 343 (125.8 bits), Expect = 6.8e-28, P = 6.8e-28
Identities = 98/326 (30%), Positives = 145/326 (44%)
Query: 82 SGEEDRLWNIVKANSSDFSAWTALLEETEKL--------AQDNIVKIRRVYDAFLAEFPL 133
+ E RL V A+ F W L+ E L + + +R YD FL +FPL
Sbjct: 14 NAEIKRLRAEVDADPDSFENWEKLVRACEALDGGLTRNSSPQALATLRDAYDRFLLKFPL 73
Query: 134 CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 193
+GYWKKYAD E + + VYER +T SVD+W YC F + T P+ +R LF
Sbjct: 74 LFGYWKKYADLEFTIAGPESAEMVYERGCASITNSVDLWTEYCSFKMETTHVPQLVRDLF 133
Query: 194 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAA 253
ERG A VG D+++ P W+KY+EYE Q+ + I R++ P+ Q RY+ F
Sbjct: 134 ERGAACVGLDFMAHPFWNKYLEYEERQEAHENIFKILQRVIHIPMYQYARYYERFSTMVH 193
Query: 254 SRPL-----SELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDA------TEQTSKP 302
+R L +EL+ ++T E + E + DA T+ ++
Sbjct: 194 TRALDDVVSAELQARFKTEIEAEAAAYGVTKTEPEFE-QEMRRKVDAHYGEIFTKTQTEV 252
Query: 303 VSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETA----IRRPYFHVKPLSVTEL-- 356
L EAE Y V E + KK K + FE A +R + + + L
Sbjct: 253 TKRWLYEAEIKRPYFHVTE-LEKKELSNWRKYLDFEEAEGSFVRTAFLYERCLVTCAFYD 311
Query: 357 ENWHNYLDFIERDGDFNKVVK-LYER 381
E W Y ++ D + V+ +Y R
Sbjct: 312 EFWFRYARWMSAQPDKTEEVRNIYLR 337
Score = 337 (123.7 bits), Expect = 3.2e-27, P = 3.2e-27
Identities = 124/473 (26%), Positives = 202/473 (42%)
Query: 156 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVG------TDYLSFPL 209
+ Y+R + W Y G PE+ ++ERG A + T+Y SF +
Sbjct: 62 DAYDRFLLKFPLLFGYWKKYADLEFTIAG-PESAEMVYERGCASITNSVDLWTEYCSFKM 120
Query: 210 WDKYIEYEYMQQEWSR-VAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXX 268
++ + ++ + R A + + +P + +E A L+
Sbjct: 121 ETTHVP-QLVRDLFERGAACVGLDFMAHPFWNKYLEYEERQE-AHENIFKILQRVIHIPM 178
Query: 269 XXXXXXXXPSETGAEVKANEEEVQPDA-----TEQTSKPVSAGLTEAE-ELE-----KYI 317
T +A ++ V + TE ++ + G+T+ E E E K
Sbjct: 179 YQYARYYERFSTMVHTRALDDVVSAELQARFKTEIEAEAAAYGVTKTEPEFEQEMRRKVD 238
Query: 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVK 377
A E++ K + +K +E I+RPYFHV L EL NW YLDF E +G F +
Sbjct: 239 AHYGEIFTKTQTEVTKRWLYEAEIKRPYFHVTELEKKELSNWRKYLDFEEAEGSFVRTAF 298
Query: 378 LYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVFVK-RLPEIHLFAARFK 435
LYERCL+ CA Y E+W RY M A + N RA +FV P I L A F+
Sbjct: 299 LYERCLVTCAFYDEFWFRYARWMSAQPDKTEEVRNIYLRAATIFVPISRPGIRLQFAYFE 358
Query: 436 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 495
E G + AR + + PG +E II AN+ERR +++ A + +Q I E +
Sbjct: 359 ESCGRVAMAREVHNAILLRL-PGCIEVIISLANLERRHNDIDTAIEVLKQQI--ESPEVD 415
Query: 496 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQID 555
T +L +++ L V AE+AR + + S+ I FE Q + +++
Sbjct: 416 IWTKAVLVTEWASLLWTVKGTAEEARAVFQKNAQWYGGSRHFWMQWIQFELEQPTSAELE 475
Query: 556 FLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKK--AEDR 606
+ ++ + S ++A ++EL V+L +L G +K+ A DR
Sbjct: 476 AQHSERLREIIDKIRTESNMSSAAKKELCGVYLAYLQHRGGKDAMKQFLAIDR 528
>TAIR|locus:2152566 [details] [associations]
symbol:AT5G48650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006810 "transport" evidence=IEA] [GO:0006913
"nucleocytoplasmic transport" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 EMBL:CP002688 GO:GO:0000166
GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR018222
PROSITE:PS50177 EMBL:BT002864 EMBL:BT005640 IPI:IPI00523841
RefSeq:NP_199676.2 UniGene:At.29836 ProteinModelPortal:Q84JH2
SMR:Q84JH2 IntAct:Q84JH2 STRING:Q84JH2 PaxDb:Q84JH2 PRIDE:Q84JH2
EnsemblPlants:AT5G48650.1 GeneID:834922 KEGG:ath:AT5G48650
TAIR:At5g48650 eggNOG:NOG292401 InParanoid:Q84JH2 OMA:FNANIDM
PhylomeDB:Q84JH2 ProtClustDB:CLSN2918367 ArrayExpress:Q84JH2
Genevestigator:Q84JH2 Uniprot:Q84JH2
Length = 458
Score = 207 (77.9 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 60/181 (33%), Positives = 87/181 (48%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST-ESASSMLDIHSLVISLNF--- 778
VGS FV QYY + P+ + +FY + S + RV D S+ I + L +
Sbjct: 16 VGSAFVNQYYYIFCNMPEHLPRFYQEISRVGRVGQDGVMRDFSTFQGISEELKRLTYGDC 75
Query: 779 TAIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 838
+ EI + ++ S NGG L+ V+G E RR KF QTFFLAPQEKG+FVLNDI F+
Sbjct: 76 NSAEITSYDTQESHNGGFLLFVTGYFTLNERSRR-KFTQTFFLAPQEKGFFVLNDILRFV 134
Query: 839 DEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSVHIEDDATD 898
+++ P + E + + I G + V + VS ++A D
Sbjct: 135 NDDAKDNVPETIDGEVVSGINSTTPTIINGMKGSEQAACVSVNPVCKEVSKPLDNENAKD 194
Query: 899 N 899
N
Sbjct: 195 N 195
Score = 186 (70.5 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 50/163 (30%), Positives = 80/163 (49%)
Query: 953 RKTYASILRVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQ----QSNYTSSFVPES 1008
+K+YAS+L+V+K + + PS K P+ T Q Q SS P
Sbjct: 234 KKSYASVLKVTKDKFGVPAVSLPSPKKIPKDQEHQAPSDPSTGQILKDQGQQASSD-PSQ 292
Query: 1009 GVSSHMPESGFEAVDDSLGLDE-GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV 1067
+ S +A ++ + E S+YVR+LP +E EF+ FG I G+ V
Sbjct: 293 VIESDTVSESVDASENGHNQEAVAEGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQV 352
Query: 1068 RNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110
N++ + G Y FVEFE+ AI+ASP+++ G + ++EE+
Sbjct: 353 INQRGL-GYPYGFVEFEEADAAHRAIEASPVKIGGLRAFVEEK 394
Score = 38 (18.4 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 878 VLEEEAREYVSSVHIEDDATDNY 900
+ E AR ++ + DD+ NY
Sbjct: 201 IANEVARTEITCKEVADDSQKNY 223
>SGD|S000004509 [details] [associations]
symbol:PRP39 "U1 snRNP protein involved in splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0000243 "commitment complex" evidence=IGI]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IGI]
[GO:0030627 "pre-mRNA 5'-splice site binding" evidence=IGI]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR003107 SMART:SM00386 SGD:S000004509 EMBL:BK006946
eggNOG:COG0457 EMBL:Z47816 GO:GO:0000243 GO:GO:0071004
GO:GO:0005685 GO:GO:0000395 GeneTree:ENSGT00390000005033 KO:K13217
OrthoDB:EOG4DNJD8 EMBL:L29224 EMBL:AY692912 PIR:S47920
RefSeq:NP_013667.1 ProteinModelPortal:P39682 DIP:DIP-812N
IntAct:P39682 MINT:MINT-612602 STRING:P39682 PaxDb:P39682
PRIDE:P39682 EnsemblFungi:YML046W GeneID:854960 KEGG:sce:YML046W
CYGD:YML046w HOGENOM:HOG000115710 OMA:NGHPGIA NextBio:978042
Genevestigator:P39682 GermOnline:YML046W Uniprot:P39682
Length = 629
Score = 244 (91.0 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 52/173 (30%), Positives = 92/173 (53%)
Query: 97 SDFSAWTALLEETEKLA------QDNI-VKIRRVYDAFLAEFPLCYGYWKKYADHEARVG 149
SD S+ T +++ E+ D+I + + + L ++PL +G+WK++A E ++
Sbjct: 43 SDISSLTQMVDVIEQTVVKYGNPNDSIKLALETILWQILRKYPLLFGFWKRFATIEYQLF 102
Query: 150 SMDKVVEVYERAVQGVTYSVDIWLHYC-IFAINTYGDPETIRRLFERGLAYVGTDYLSFP 208
+ K + V +V+ S+++W Y + +N + + IR FE +G +LS P
Sbjct: 103 GLKKSIAVLATSVKWFPTSLELWCDYLNVLCVNNPNETDFIRNNFEIAKDLIGKQFLSHP 162
Query: 209 LWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELR 261
WDK+IE+E Q+ W V IY I+E P+ Q R+F+S+K+F + L R
Sbjct: 163 FWDKFIEFEVGQKNWHNVQRIYEYIIEVPLHQYARFFTSYKKFLNEKNLKTTR 215
Score = 120 (47.3 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 325 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI---ERDGDFNKVVKLYER 381
+K + ++I FE+ I++P+F++ + +LENW YL F+ + D V+ +++R
Sbjct: 222 RKTQTTVNEIWQFESKIKQPFFNLGQVLNDDLENWSRYLKFVTDPSKSLDKEFVMSVFDR 281
Query: 382 CLIACANYPEYWIRYV 397
CLI C + W+ Y+
Sbjct: 282 CLIPCLYHENTWMMYI 297
>TAIR|locus:2023854 [details] [associations]
symbol:AT1G13730 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006810 "transport" evidence=IEA] [GO:0006913
"nucleocytoplasmic transport" evidence=ISS] [GO:0009165 "nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002075 InterPro:IPR012677 Pfam:PF02136 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0006810 EMBL:AC027656 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177 HSSP:P33331
HOGENOM:HOG000239086 EMBL:AY058169 EMBL:AY140039 EMBL:BT006581
IPI:IPI00531419 PIR:F86270 RefSeq:NP_563932.1 UniGene:At.15556
ProteinModelPortal:Q9LMX6 SMR:Q9LMX6 IntAct:Q9LMX6 STRING:Q9LMX6
PaxDb:Q9LMX6 PRIDE:Q9LMX6 EnsemblPlants:AT1G13730.1 GeneID:837933
KEGG:ath:AT1G13730 TAIR:At1g13730 eggNOG:NOG331084
InParanoid:Q9LMX6 OMA:DIAHEES PhylomeDB:Q9LMX6
ProtClustDB:CLSN2687795 ArrayExpress:Q9LMX6 Genevestigator:Q9LMX6
Uniprot:Q9LMX6
Length = 428
Score = 206 (77.6 bits), Expect = 6.1e-23, Sum P(2) = 6.1e-23
Identities = 47/124 (37%), Positives = 74/124 (59%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTE-SASSMLDIHSLVISLNF--T 779
+G+ FV +YY +L + P VHQFY D S + R D S S+ I+ ++S ++ +
Sbjct: 15 IGNSFVEKYYNLLYKSPSQVHQFYLDDSVLGRPGSDGEMVSVKSLKAINEQIMSFDYEIS 74
Query: 780 AIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 839
I+I T +S S+ GV+ +V+G + KE +R +F Q+FFL P YFVLND+F ++
Sbjct: 75 KIQILTADSQASYMNGVVTLVTGLLTVKEG-QRMRFSQSFFLVPLNGSYFVLNDVFRYVA 133
Query: 840 EEPV 843
+E V
Sbjct: 134 DEIV 137
Score = 140 (54.3 bits), Expect = 6.1e-23, Sum P(2) = 6.1e-23
Identities = 42/128 (32%), Positives = 64/128 (50%)
Query: 989 PAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAF 1048
P +P T+ S S P + VS H S +D + E +++V NL T
Sbjct: 241 PKSKPVTKPSAARESKAP-APVSEH---SSAATIDQ-----QAEGYTIFVANLLMDATPE 291
Query: 1049 EIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQV 1105
++ E F+ FG I DG+ VR+ + + G C+ FV F V+ +QA S I++ R+V
Sbjct: 292 QLNETFKGFGAITKDGIQVRSYR-LKGNCFGFVTFASAEAVKLVLQAHKESAIRIGNRRV 350
Query: 1106 YIEERRPN 1113
IEE+R N
Sbjct: 351 SIEEKRGN 358
Score = 45 (20.9 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 989 PAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAV--DDSLGLD 1029
P QP +Q+ + PE V++ P++ + V D S G+D
Sbjct: 170 PTQQPEAKQTTENTVKKPERAVANGHPKTQEDNVVNDKSNGVD 212
>POMBASE|SPBP8B7.11 [details] [associations]
symbol:nxt3 "ubiquitin protease cofactor Glp1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016579 "protein deubiquitination"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0060628 "regulation of ER to Golgi vesicle-mediated transport"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
PomBase:SPBP8B7.11 GO:GO:0005829 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0051028 GO:GO:0060628 GO:GO:0016579 OrthoDB:EOG4N33ZJ
InterPro:IPR018222 PROSITE:PS50177 eggNOG:NOG324333 PIR:T40805
RefSeq:NP_596518.1 ProteinModelPortal:O94260 IntAct:O94260
STRING:O94260 PRIDE:O94260 EnsemblFungi:SPBP8B7.11.1 GeneID:2541364
KEGG:spo:SPBP8B7.11 OMA:ATENNFA NextBio:20802473 Uniprot:O94260
Length = 434
Score = 253 (94.1 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 66/183 (36%), Positives = 102/183 (55%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVD-GDSTESASSMLDIHSLVISLNFT- 779
++G FV +YY L ++P+ +H FY+ S++I D G+S +IH+ ++ L+F
Sbjct: 17 EIGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQN 76
Query: 780 -AIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 838
+ I ++SL S NGG+++ V G + K R KF QTFFLA Q GYFVLNDIF FL
Sbjct: 77 CKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSR-KFAQTFFLAEQPNGYFVLNDIFRFL 135
Query: 839 DEEPVYQHPAP-VLSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSVHIEDDA- 896
E+ + +P + + K DV AS P G+ + +++ A+E H +D A
Sbjct: 136 REDVEEEEESPDAVEKEKKDV---ASEPYVN--GVQSQEHL--PSAKE---EGHYQDPAA 185
Query: 897 TDN 899
T+N
Sbjct: 186 TEN 188
Score = 74 (31.1 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
SV+V+N+P + ++ FG +K F R RK A+V+F + VQ A+
Sbjct: 316 SVFVKNIPPETSDVSLKSAMSIFGPVKAIE-FAR-RKGT-----AYVDFVNHECVQLALN 368
Query: 1095 ASPIQLAGRQVYIEERR 1111
+Q+ + IEERR
Sbjct: 369 KKTLQINNATLNIEERR 385
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 971 VATQPSFTKTASTTSDW-NPAPQPTTQQSN--YT-SSFVPESGV--SSHMPESGFEAVDD 1024
V +Q S + TASTT TQQ YT S+ + E+ V + PE+ ++
Sbjct: 274 VKSQASVSSTASTTGQTVKGVNADQTQQPTAPYTQSNELLETSVFVKNIPPETSDVSLKS 333
Query: 1025 SLGLDEGEVKSV 1036
++ + G VK++
Sbjct: 334 AMSIF-GPVKAI 344
Score = 37 (18.1 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 18/82 (21%), Positives = 39/82 (47%)
Query: 959 ILRVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESG---VSSHMP 1015
+++V+++ SFV+ Q + + + TS+ A +N ++ P+S ++ + P
Sbjct: 215 VIQVTEASVPSFVSQQENQLQDEALTSNSKNADAIGASDANVATA--PKSWADLIARNHP 272
Query: 1016 ESGFEAVDDSLGLDEGE-VKSV 1036
+ +A S G+ VK V
Sbjct: 273 DVKSQASVSSTASTTGQTVKGV 294
>TAIR|locus:2098555 [details] [associations]
symbol:AT3G07250 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006810 "transport" evidence=IEA] [GO:0006913
"nucleocytoplasmic transport" evidence=ISS] [GO:0009506
"plasmodesma" evidence=IDA] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102
SMART:SM00360 GO:GO:0009506 EMBL:CP002686 GO:GO:0000166
GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
InterPro:IPR012463 Pfam:PF07897 InterPro:IPR018222 PROSITE:PS50177
IPI:IPI00518200 RefSeq:NP_187381.2 UniGene:At.53212
ProteinModelPortal:F4JED3 SMR:F4JED3 PRIDE:F4JED3
EnsemblPlants:AT3G07250.1 GeneID:819913 KEGG:ath:AT3G07250
Uniprot:F4JED3
Length = 1294
Score = 178 (67.7 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 49/148 (33%), Positives = 71/148 (47%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIE 782
VG F QYY LQ P+ +++ Y D S++ R D T ++ +F +++
Sbjct: 281 VGDEFARQYYNTLQNAPENLYKLYKDKSTISRPGLDGTMRVFTLSKDLKWRSPGSFDSVK 340
Query: 783 IKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD--E 840
I ++ S S G+LV+V G + E R F Q FFL PQEKGY V D+F F+D E
Sbjct: 341 ITSVTSQDSLKQGILVVVYGYLTFNERPARH-FTQVFFLVPQEKGYIVCTDMFRFVDIPE 399
Query: 841 EPVYQHPAPVLSENKFDVQHDASSPIPE 868
PA + E K A+ + E
Sbjct: 400 ANAAIPPANDVIEEKVPETEGAALRVSE 427
Score = 162 (62.1 bits), Expect = 3.7e-12, Sum P(3) = 3.7e-12
Identities = 40/119 (33%), Positives = 62/119 (52%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN---FT 779
+ ++F YY LQ P+++ +Y D S + R D T +S++ DI + L+ F
Sbjct: 944 IAAFFSEHYYNNLQNSPEILPGYYKDVSKITRPGLDGTMRSSTLPDIIEDLDMLSPGGFD 1003
Query: 780 AIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 838
++E+ ++ S S + G+ V V G E R F Q F APQEKG FV D+F F+
Sbjct: 1004 SVEVTSVMSQDSHDKGIRVAVDGYFTFNER-PARNFTQNFTFAPQEKGLFVSTDMFKFV 1061
Score = 160 (61.4 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 48/155 (30%), Positives = 75/155 (48%)
Query: 965 SQSTSFVATQPSFTKTASTTSD----WNPAPQPTTQQSNYTSSFVP-ESGVSSHMPESGF 1019
S + V +Q S K D +N P Q N+T F P E G+ F
Sbjct: 1004 SVEVTSVMSQDSHDKGIRVAVDGYFTFNERPARNFTQ-NFT--FAPQEKGLFVSTDMFKF 1060
Query: 1020 EAVDDSLG-LDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCY 1078
+ ++ + ++ V+NLP T +E F+ FG I+ GV VRN++ Y
Sbjct: 1061 VGIPEANATIPPANNAAICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSF---SY 1117
Query: 1079 AFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPN 1113
FVEF++ + Q AI+ASP+ + R VY+E++RP+
Sbjct: 1118 GFVEFKEENAAQRAIKASPVTIDLRSVYVEKKRPD 1152
Score = 142 (55.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 38/109 (34%), Positives = 55/109 (50%)
Query: 1005 VPES-GVSSHM--PESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIK 1061
VPE+ G + + P GF+ V EG ++ + LP T +E F+ FG I+
Sbjct: 415 VPETEGAALRVSEPNHGFDNVPKLSCASEGA--AICAKKLPLDATIAFVENAFKQFGEIR 472
Query: 1062 PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110
GV VR G YA+VEFE+ AI ASPI + G + Y+E++
Sbjct: 473 RGGVEVRINWHCTGK-YAYVEFEEAEAANRAIMASPISIDGYRTYVEKK 520
Score = 137 (53.3 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+ V++LP T +E F+ FG IK + V N + YAFVEFE+ + AIQA
Sbjct: 552 IRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANS-NYWYAFVEFEEADAAKRAIQA 610
Query: 1096 SPIQLAGRQVYIEERRP 1112
SP+ + G Y+E+++P
Sbjct: 611 SPLNVDGHTTYVEQKQP 627
Score = 94 (38.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI- 1093
+V+V+NLP VT +E F+ FG IK GV V NR VG + V+F + + A+
Sbjct: 1197 AVHVKNLPPNVTTDWVENAFKQFGPIKRGGVQVSNRG--VGNWFGNVKFVHAAAAERAVN 1254
Query: 1094 -QASPIQLAG 1102
Q I L G
Sbjct: 1255 PQVLLIMLPG 1264
Score = 92 (37.4 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 1022 VDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFV 1081
+ + G + E SV+++ LP VT IE+ + FG I + K +AFV
Sbjct: 734 IQEEEGTESHEA-SVFLKRLPLDVTFALIEDALKKFGPINAISII----KSGPLYKFAFV 788
Query: 1082 EFEDISGVQNAIQASPIQLAGRQVYIEER 1110
+FE AI ASP+++ + V ++++
Sbjct: 789 DFEKADVANRAIMASPVRICEKNVNVQKK 817
Score = 52 (23.4 bits), Expect = 3.7e-12, Sum P(3) = 3.7e-12
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 396 YVLCMEASGSMDL--AHNALARATHVFVKRLPEIHLFAARFKEQNGDID 442
Y++C + +D+ A+ A+ A V +++PE A R E N D
Sbjct: 385 YIVCTDMFRFVDIPEANAAIPPANDVIEEKVPETEGAALRVSEPNHGFD 433
>ASPGD|ASPL0000013038 [details] [associations]
symbol:AN8268 species:162425 "Emericella nidulans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:BN001302 OMA:YPIYIRG InterPro:IPR018222
PROSITE:PS50177 EMBL:AACD01000145 eggNOG:NOG324333
RefSeq:XP_681537.1 ProteinModelPortal:Q5ATW2
EnsemblFungi:CADANIAT00004328 GeneID:2868982 KEGG:ani:AN8268.2
HOGENOM:HOG000159527 OrthoDB:EOG4RR9T6 Uniprot:Q5ATW2
Length = 526
Score = 207 (77.9 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 57/174 (32%), Positives = 87/174 (50%)
Query: 703 QTSVPQNX-XXXXXXXXXXXQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMI-RVDGDST 760
Q+S P N +VG YFV QYY + + PD +H FYS S ++ + +S
Sbjct: 39 QSSTPSNAPSNDQKNGISKDEVGWYFVEQYYTNMSRSPDKLHLFYSRRSQLVFGTEAESV 98
Query: 761 ESASSMLDIHSLVISLNFTAIEIKTIN--SLGSWNGGVLVMVSGSVKTKEFCRRRKFVQT 818
A I L+F +++ +N + S+ +L+ V G + K+ RKFVQT
Sbjct: 99 PVAVGQKAIQEKFKQLDFQDCKVRVLNVDAQASFEN-ILISVIGEISNKQE-PSRKFVQT 156
Query: 819 FFLAPQEKGYFVLNDIFHFL-DEEPVYQHPAPVLSENKFDVQHDASSPIPEQAG 871
F LA Q GY+VLND+F +L DEE V + A +S + + + + +P AG
Sbjct: 157 FVLAEQPNGYYVLNDVFRYLVDEEEVAEDAA--ISSDTVE-EPELQAPAQTAAG 207
Score = 111 (44.1 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 42/167 (25%), Positives = 74/167 (44%)
Query: 954 KTYASILRVSKSQSTSFVATQPSFTKTASTTSDWN----PAPQPTTQQSNYTSS----FV 1005
KT+ASI + + + A + K A + + PAP P + + ++
Sbjct: 305 KTWASIASKTGAAAPVVPAIPVAPVKPAPAAAPASQPAAPAPAPASAAAAAPAAESGPSQ 364
Query: 1006 PESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV 1065
P S S +G + + + Y++N+ V A ++E + +G++ V
Sbjct: 365 PSSNDGSGWQTAGHDHKKSQARASDNQAVLGYIKNVTEKVNADLLKETLERYGKLTHFDV 424
Query: 1066 FVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1112
+K+ C AF+EF D +G A+ A+P Q+ QV +EERRP
Sbjct: 425 --SRQKN----C-AFIEFADRAGYNAAVAANPHQIGTEQVKVEERRP 464
>TAIR|locus:2026423 [details] [associations]
symbol:AT1G69250 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006810 "transport"
evidence=IEA] [GO:0006913 "nucleocytoplasmic transport"
evidence=ISS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0006888 "ER to Golgi vesicle-mediated transport"
evidence=RCA] [GO:0009165 "nucleotide biosynthetic process"
evidence=RCA] [GO:0043090 "amino acid import" evidence=RCA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 GO:GO:0006810 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 EMBL:AC008262 EMBL:AC018364
InterPro:IPR018222 PROSITE:PS50177 HOGENOM:HOG000239086
EMBL:BT006208 IPI:IPI00537284 PIR:E96716 RefSeq:NP_177085.1
UniGene:At.25325 ProteinModelPortal:Q9LDI9 SMR:Q9LDI9 STRING:Q9LDI9
PRIDE:Q9LDI9 EnsemblPlants:AT1G69250.1 GeneID:843256
KEGG:ath:AT1G69250 TAIR:At1g69250 InParanoid:Q9LDI9 OMA:PIKENGI
PhylomeDB:Q9LDI9 ProtClustDB:CLSN2682528 Genevestigator:Q9LDI9
Uniprot:Q9LDI9
Length = 427
Score = 170 (64.9 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
Identities = 45/122 (36%), Positives = 69/122 (56%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTE-SASSMLDIHSLVISLNF--T 779
+ + FV QYY VL Q P + Y DAS + R D T S +S+ I+ ++S +F T
Sbjct: 13 IAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEAINKHILSCDFENT 72
Query: 780 AIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 839
E+ +++S S G+ +MV G + K+ +RRKF Q F+LA Q VLND+ ++D
Sbjct: 73 KFEVLSVDSQNSLEDGIFIMVIGFMTGKDN-QRRKFSQMFYLARQNT-LVVLNDMLRYVD 130
Query: 840 EE 841
+E
Sbjct: 131 QE 132
Score = 142 (55.0 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
Identities = 41/147 (27%), Positives = 73/147 (49%)
Query: 969 SFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVD-DSLG 1027
SF S K A+ +P P Q+ Y P + + P +++ +
Sbjct: 217 SFADIVGSMAKNAAPFQVKSPVQAPV-QKPKYVGQ--PRAAAAPQKPAYVSKSIKKNDQK 273
Query: 1028 LDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRN-RKDVVGVCYAFVEFEDI 1086
+ E S++V NLP ++ E F++FG IK +G+ VR+ R + VC+ F+ FE +
Sbjct: 274 VIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETV 333
Query: 1087 SGVQNAIQAS---PIQLAGRQVYIEER 1110
+ VQ+ +QA+ P LA R++ ++E+
Sbjct: 334 ASVQSVLQAAKNTPFMLADRKLRVKEK 360
>UNIPROTKB|I3LPH5 [details] [associations]
symbol:G3BP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0006810 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000011365 CTD:9908 OMA:MEQNESD EMBL:CU467763
RefSeq:XP_003357027.1 Ensembl:ENSSSCT00000026131 GeneID:100621975
KEGG:ssc:100621975 Uniprot:I3LPH5
Length = 448
Score = 198 (74.8 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
Identities = 57/167 (34%), Positives = 87/167 (52%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAPEGSVPNKFYVHND 129
Query: 834 IFHFLDEEPVYQHPAPVL---SENKFDVQHDASSPIPEQAGLAASDY 877
+F + DE V+ P L SE++ + + + P PE S Y
Sbjct: 130 MFRYEDE--VFGDSEPELDEESEDEVEEEQEERQPTPEPVQETNSGY 174
Score = 92 (37.4 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVC--YAFVEFEDISGVQNA 1092
++V NLP + E++E F +FG + V +R N K V G + FV F+D VQ
Sbjct: 299 LFVGNLPHDIDENELKEFFMSFGNV----VELRINTKGVGGKLPNFGFVVFDDSEPVQRI 354
Query: 1093 IQASPIQLAGR-QVYIEERR 1111
+ A PI G ++ +EE++
Sbjct: 355 LIAKPIMFRGEVRLNVEEKK 374
Score = 41 (19.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 1009 GVSSHMPESGFEAVDDS 1025
GV +P GF DDS
Sbjct: 332 GVGGKLPNFGFVVFDDS 348
>UNIPROTKB|Q2KJ17 [details] [associations]
symbol:G3BP2 "GTPase activating protein (SH3 domain)
binding protein 2" species:9913 "Bos taurus" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002075 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0000166
GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR018222
PROSITE:PS50177 eggNOG:NOG324333 GeneTree:ENSGT00390000011365
HOGENOM:HOG000220838 HOVERGEN:HBG007211 CTD:9908 OMA:MEQNESD
EMBL:DAAA02018118 EMBL:BC105567 IPI:IPI00708814
RefSeq:NP_001039920.1 UniGene:Bt.87528 STRING:Q2KJ17
Ensembl:ENSBTAT00000018663 GeneID:539249 KEGG:bta:539249
NextBio:20877877 Uniprot:Q2KJ17
Length = 449
Score = 195 (73.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 55/158 (34%), Positives = 85/158 (53%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAPEGSVPNKFYVHND 129
Query: 834 IFHFLDEEPVYQHPAPVL---SENKFDVQHDASSPIPE 868
+F + DE V+ P L SE++ + + + P PE
Sbjct: 130 MFRYEDE--VFGDSEPELDEESEDEVEEEQEERQPSPE 165
Score = 92 (37.4 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVC--YAFVEFEDISGVQNA 1092
++V NLP + E++E F +FG + V +R N K V G + FV F+D VQ
Sbjct: 300 LFVGNLPHDIDENELKEFFMSFGNV----VELRINTKGVGGKLPNFGFVVFDDSEPVQRI 355
Query: 1093 IQASPIQLAGR-QVYIEERR 1111
+ A PI G ++ +EE++
Sbjct: 356 LIAKPIMFRGEVRLNVEEKK 375
Score = 44 (20.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 989 PAPQPTTQQSN--YTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVT 1046
P+P+P + +N Y + +G+ + ES E + E E K+ ++
Sbjct: 162 PSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEP----ESETKTEELKPPVEEKN 217
Query: 1047 AFEIEEE 1053
E+EE+
Sbjct: 218 LEELEEK 224
Score = 41 (19.5 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 1009 GVSSHMPESGFEAVDDS 1025
GV +P GF DDS
Sbjct: 333 GVGGKLPNFGFVVFDDS 349
>RGD|1309571 [details] [associations]
symbol:G3bp2 "GTPase activating protein (SH3 domain) binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102
SMART:SM00360 RGD:1309571 GO:GO:0000166 GO:GO:0006810
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 InterPro:IPR018222
PROSITE:PS50177 eggNOG:NOG324333 GeneTree:ENSGT00390000011365
HOGENOM:HOG000220838 HOVERGEN:HBG007211 CTD:9908 EMBL:CH474060
EMBL:BC079225 IPI:IPI00464529 RefSeq:NP_001014011.1
UniGene:Rn.198360 MINT:MINT-7138399 STRING:Q6AY21
Ensembl:ENSRNOT00000003346 GeneID:305240 KEGG:rno:305240
UCSC:RGD:1309571 NextBio:654241 Genevestigator:Q6AY21
Uniprot:Q6AY21
Length = 449
Score = 194 (73.4 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 55/158 (34%), Positives = 85/158 (53%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAPEGSVPNKFYVHND 129
Query: 834 IFHFLDEEPVYQHPAPVL---SENKFDVQHDASSPIPE 868
+F + DE V+ P L SE++ + + + P PE
Sbjct: 130 MFRYEDE--VFGDSEPELDEESEDEVEEEQEDRQPSPE 165
Score = 92 (37.4 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVC--YAFVEFEDISGVQNA 1092
++V NLP + E++E F +FG + V +R N K V G + FV F+D VQ
Sbjct: 300 LFVGNLPHDIDENELKEFFMSFGNV----VELRINTKGVGGKLPNFGFVVFDDSEPVQRI 355
Query: 1093 IQASPIQLAGR-QVYIEERR 1111
+ A PI G ++ +EE++
Sbjct: 356 LIAKPIMFRGEVRLNVEEKK 375
Score = 47 (21.6 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 986 DWNPAPQPTTQQSN--YTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPS 1043
D P+P+P + +N Y + +G+ + ES E + E E K+ ++
Sbjct: 159 DRQPSPEPVQENANSAYYEAHPVTNGIEEPLEESSHEPEPEP----ESETKTEELKPQAE 214
Query: 1044 TVTAFEIEEE 1053
E+EE+
Sbjct: 215 EKHLEELEEK 224
Score = 41 (19.5 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 1009 GVSSHMPESGFEAVDDS 1025
GV +P GF DDS
Sbjct: 333 GVGGKLPNFGFVVFDDS 349
>UNIPROTKB|Q9UN86 [details] [associations]
symbol:G3BP2 "Ras GTPase-activating protein-binding protein
2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0007265 "Ras protein signal transduction"
evidence=NAS] [GO:0007253 "cytoplasmic sequestering of NF-kappaB"
evidence=NAS] [GO:0030159 "receptor signaling complex scaffold
activity" evidence=NAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0007264 "small GTPase mediated signal transduction"
evidence=TAS] [GO:0051056 "regulation of small GTPase mediated
signal transduction" evidence=TAS] InterPro:IPR000504
InterPro:IPR002075 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 Reactome:REACT_111102
GO:GO:0007265 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0051056
GO:GO:0003723 EMBL:CH471057 GO:GO:0030159 GO:GO:0051028
InterPro:IPR018222 PROSITE:PS50177 GO:GO:0007253 eggNOG:NOG324333
HOGENOM:HOG000220838 HOVERGEN:HBG007211 OrthoDB:EOG4XWFZ0
EMBL:AF145284 EMBL:AB014560 EMBL:AF051311 EMBL:AF053535
EMBL:AK291786 EMBL:BC011731 IPI:IPI00009057 IPI:IPI00179890
RefSeq:NP_036429.2 RefSeq:NP_987100.1 RefSeq:NP_987101.1
UniGene:Hs.303676 ProteinModelPortal:Q9UN86 SMR:Q9UN86
IntAct:Q9UN86 MINT:MINT-3082700 STRING:Q9UN86 PhosphoSite:Q9UN86
DMDM:116242482 PaxDb:Q9UN86 PRIDE:Q9UN86 Ensembl:ENST00000357854
Ensembl:ENST00000359707 Ensembl:ENST00000395719 GeneID:9908
KEGG:hsa:9908 UCSC:uc003hir.3 UCSC:uc003hit.3 CTD:9908
GeneCards:GC04M076567 HGNC:HGNC:30291 HPA:HPA018304 HPA:HPA018425
neXtProt:NX_Q9UN86 PharmGKB:PA162389134 InParanoid:Q9UN86
OMA:MEQNESD PhylomeDB:Q9UN86 GenomeRNAi:9908 NextBio:37365
ArrayExpress:Q9UN86 Bgee:Q9UN86 CleanEx:HS_G3BP2
Genevestigator:Q9UN86 GermOnline:ENSG00000138757 Uniprot:Q9UN86
Length = 482
Score = 195 (73.7 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 55/158 (34%), Positives = 85/158 (53%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAPEGSVPNKFYVHND 129
Query: 834 IFHFLDEEPVYQHPAPVL---SENKFDVQHDASSPIPE 868
+F + DE V+ P L SE++ + + + P PE
Sbjct: 130 MFRYEDE--VFGDSEPELDEESEDEVEEEQEERQPSPE 165
Score = 92 (37.4 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVC--YAFVEFEDISGVQNA 1092
++V NLP + E++E F +FG + V +R N K V G + FV F+D VQ
Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNV----VELRINTKGVGGKLPNFGFVVFDDSEPVQRI 388
Query: 1093 IQASPIQLAGR-QVYIEERR 1111
+ A PI G ++ +EE++
Sbjct: 389 LIAKPIMFRGEVRLNVEEKK 408
Score = 45 (20.9 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 15/67 (22%), Positives = 29/67 (43%)
Query: 989 PAPQPTTQQSN--YTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVT 1046
P+P+P + +N Y + +G+ + ES E + E E K+ ++
Sbjct: 162 PSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEP----ESETKTEELKPQVEEKN 217
Query: 1047 AFEIEEE 1053
E+EE+
Sbjct: 218 LEELEEK 224
Score = 41 (19.5 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 1009 GVSSHMPESGFEAVDDS 1025
GV +P GF DDS
Sbjct: 366 GVGGKLPNFGFVVFDDS 382
>UNIPROTKB|E2QYY6 [details] [associations]
symbol:G3BP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006810 "transport" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177 CTD:9908
RefSeq:XP_855995.1 ProteinModelPortal:E2QYY6
Ensembl:ENSCAFT00000013317 GeneID:478429 KEGG:cfa:478429
NextBio:20853768 Uniprot:E2QYY6
Length = 449
Score = 195 (73.7 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 55/158 (34%), Positives = 85/158 (53%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAPEGSVPNKFYVHND 129
Query: 834 IFHFLDEEPVYQHPAPVL---SENKFDVQHDASSPIPE 868
+F + DE V+ P L SE++ + + + P PE
Sbjct: 130 MFRYEDE--VFGDSEPELDEESEDEVEEEQEERQPSPE 165
Score = 92 (37.4 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVC--YAFVEFEDISGVQNA 1092
++V NLP + E++E F +FG + V +R N K V G + FV F+D VQ
Sbjct: 300 LFVGNLPHDIDENELKEFFMSFGNV----VELRINTKGVGGKLPNFGFVVFDDSEPVQRI 355
Query: 1093 IQASPIQLAGR-QVYIEERR 1111
+ A PI G ++ +EE++
Sbjct: 356 LIAKPIMFRGEVRLNVEEKK 375
Score = 41 (19.5 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 1009 GVSSHMPESGFEAVDDS 1025
GV +P GF DDS
Sbjct: 333 GVGGKLPNFGFVVFDDS 349
Score = 40 (19.1 bits), Expect = 2.2e-16, Sum P(3) = 2.2e-16
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 989 PAPQPTTQQ--SNYTSSFVPESGVSSHMPESGFE 1020
P+P+P + S Y + +G+ + ES E
Sbjct: 162 PSPEPVQENADSGYYEAHPVANGIEEPLEESSHE 195
>MGI|MGI:2442040 [details] [associations]
symbol:G3bp2 "GTPase activating protein (SH3 domain) binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0007264 "small GTPase mediated signal transduction"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360 EMBL:U65313
MGI:MGI:2442040 GO:GO:0005737 GO:GO:0007264 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028 InterPro:IPR018222
PROSITE:PS50177 eggNOG:NOG324333 HOGENOM:HOG000220838
HOVERGEN:HBG007211 OrthoDB:EOG4XWFZ0 CTD:9908 OMA:MEQNESD
EMBL:AF145285 EMBL:AK145697 IPI:IPI00124245 IPI:IPI00331295
RefSeq:NP_001074263.1 RefSeq:NP_001074266.1 RefSeq:NP_035946.2
UniGene:Mm.290530 UniGene:Mm.473827 ProteinModelPortal:P97379
SMR:P97379 STRING:P97379 PhosphoSite:P97379 PaxDb:P97379
PRIDE:P97379 Ensembl:ENSMUST00000113127 Ensembl:ENSMUST00000164378
Ensembl:ENSMUST00000167918 Ensembl:ENSMUST00000169094 GeneID:23881
KEGG:mmu:23881 InParanoid:P97379 ChiTaRS:G3BP2 NextBio:303611
Bgee:P97379 Genevestigator:P97379 GermOnline:ENSMUSG00000029405
Uniprot:P97379
Length = 482
Score = 194 (73.4 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 55/158 (34%), Positives = 85/158 (53%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAPEGSVPNKFYVHND 129
Query: 834 IFHFLDEEPVYQHPAPVL---SENKFDVQHDASSPIPE 868
+F + DE V+ P L SE++ + + + P PE
Sbjct: 130 MFRYEDE--VFGDSEPELDEESEDEVEEEQEDRQPSPE 165
Score = 92 (37.4 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVC--YAFVEFEDISGVQNA 1092
++V NLP + E++E F +FG + V +R N K V G + FV F+D VQ
Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNV----VELRINTKGVGGKLPNFGFVVFDDSEPVQRI 388
Query: 1093 IQASPIQLAGR-QVYIEERR 1111
+ A PI G ++ +EE++
Sbjct: 389 LIAKPIMFRGEVRLNVEEKK 408
Score = 46 (21.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 986 DWNPAPQPTTQQSN--YTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPS 1043
D P+P+P + +N Y + +G+ + ES E + E E K+ ++
Sbjct: 159 DRQPSPEPVQENANSAYYDAHPVTNGIEEPLEESSHEPEPEP----ESETKTEELKPQVE 214
Query: 1044 TVTAFEIEEE 1053
E+EE+
Sbjct: 215 EKHLEELEEK 224
Score = 41 (19.5 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 1009 GVSSHMPESGFEAVDDS 1025
GV +P GF DDS
Sbjct: 366 GVGGKLPNFGFVVFDDS 382
>UNIPROTKB|F6XCI1 [details] [associations]
symbol:G3BP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006810 "transport" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000011365 OMA:MEQNESD Ensembl:ENSCAFT00000013317
EMBL:AAEX03016672 EMBL:AAEX03016673 Uniprot:F6XCI1
Length = 490
Score = 195 (73.7 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 55/158 (34%), Positives = 85/158 (53%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 19 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 78
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 79 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAPEGSVPNKFYVHND 137
Query: 834 IFHFLDEEPVYQHPAPVL---SENKFDVQHDASSPIPE 868
+F + DE V+ P L SE++ + + + P PE
Sbjct: 138 MFRYEDE--VFGDSEPELDEESEDEVEEEQEERQPSPE 173
Score = 92 (37.4 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVC--YAFVEFEDISGVQNA 1092
++V NLP + E++E F +FG + V +R N K V G + FV F+D VQ
Sbjct: 341 LFVGNLPHDIDENELKEFFMSFGNV----VELRINTKGVGGKLPNFGFVVFDDSEPVQRI 396
Query: 1093 IQASPIQLAGR-QVYIEERR 1111
+ A PI G ++ +EE++
Sbjct: 397 LIAKPIMFRGEVRLNVEEKK 416
Score = 41 (19.5 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 1009 GVSSHMPESGFEAVDDS 1025
GV +P GF DDS
Sbjct: 374 GVGGKLPNFGFVVFDDS 390
Score = 40 (19.1 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 989 PAPQPTTQQ--SNYTSSFVPESGVSSHMPESGFE 1020
P+P+P + S Y + +G+ + ES E
Sbjct: 170 PSPEPVQENADSGYYEAHPVANGIEEPLEESSHE 203
>UNIPROTKB|D6RB17 [details] [associations]
symbol:G3BP2 "Ras GTPase-activating protein-binding protein
2" species:9606 "Homo sapiens" [GO:0006810 "transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0005737 GO:GO:0006810
InterPro:IPR018222 PROSITE:PS50177 HOGENOM:HOG000220838
HGNC:HGNC:30291 EMBL:AC104828 IPI:IPI00966366
ProteinModelPortal:D6RB17 SMR:D6RB17 Ensembl:ENST00000503660
ArrayExpress:D6RB17 Bgee:D6RB17 Uniprot:D6RB17
Length = 198
Score = 195 (73.7 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 55/158 (34%), Positives = 85/158 (53%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAPEGSVPNKFYVHND 129
Query: 834 IFHFLDEEPVYQHPAPVL---SENKFDVQHDASSPIPE 868
+F + DE V+ P L SE++ + + + P PE
Sbjct: 130 MFRYEDE--VFGDSEPELDEESEDEVEEEQEERQPSPE 165
Score = 43 (20.2 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 989 PAPQPTTQQSN--YTSSFVPESGVSSHMPESGFE 1020
P+P+P + +N Y + +G+ + ES E
Sbjct: 162 PSPEPVQENANSGYYEAHPVTNGIEEPLEESSHE 195
>ZFIN|ZDB-GENE-070112-1972 [details] [associations]
symbol:g3bp2 "GTPase activating protein (SH3
domain) binding protein 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR000504
InterPro:IPR002075 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070112-1972
GO:GO:0000166 GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177 eggNOG:NOG324333
GeneTree:ENSGT00390000011365 HOGENOM:HOG000220838
HOVERGEN:HBG007211 OrthoDB:EOG4XWFZ0 CTD:9908 EMBL:CU570873
EMBL:BC129213 IPI:IPI00487372 RefSeq:NP_001074032.1 UniGene:Dr.6807
Ensembl:ENSDART00000046376 GeneID:556409 KEGG:dre:556409
InParanoid:A1L1U3 OMA:NDIFRYV NextBio:20881470 Uniprot:A1L1U3
Length = 507
Score = 183 (69.5 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 54/158 (34%), Positives = 82/158 (51%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + PD +H+FY SS + ++G +E+ +IH V+SL F
Sbjct: 11 VGREFVRQYYTLLNKAPDFLHRFYGRNSSYVHGGLDLNGKLSEAVYGQAEIHKKVMSLQF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGELSNNGQ-PMRKFLQTFVLAPEGSVANKFYVHND 129
Query: 834 IFHFLDEEPVYQHPAPVL---SENKFDVQHDASSPIPE 868
IF + DE V+ L SE + D D P PE
Sbjct: 130 IFRYEDE--VFGDSEAELDEESEEETDEPEDRQ-PSPE 164
Score = 100 (40.3 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 44/158 (27%), Positives = 67/158 (42%)
Query: 973 TQPSF-TKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESG---FEAV-----D 1023
TQP TK ++ P Q + TS GV S P++G F V D
Sbjct: 277 TQPRVETKPEMLSASIRPRDQRIRDRPPVTSRGPRSDGVPSSEPQAGKPHFSFVNKGRAD 336
Query: 1024 DSLGLDEGEV------KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGV 1076
+S +D V ++V NLP + E+++ F FG + V +R N K G
Sbjct: 337 ESSEMDSRRVVRYPDSHQLFVGNLPHDIDESELKDFFMTFGNV----VELRINTKSTGGK 392
Query: 1077 C--YAFVEFEDISGVQNAIQASPIQLAGR-QVYIEERR 1111
+ FV F+D VQ + PI G ++ +EE++
Sbjct: 393 IPNFGFVVFDDSEPVQRILGVKPIMFRGEVRLNVEEKK 430
>UNIPROTKB|E1C769 [details] [associations]
symbol:G3BP2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0006810 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000011365 CTD:9908 OMA:MEQNESD EMBL:AADN02008996
IPI:IPI00597302 RefSeq:XP_420536.2 UniGene:Gga.10005
ProteinModelPortal:E1C769 Ensembl:ENSGALT00000017688 GeneID:422576
KEGG:gga:422576 NextBio:20825190 Uniprot:E1C769
Length = 482
Score = 184 (69.8 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 56/170 (32%), Positives = 85/170 (50%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + PD +H+FY SS + +D G E+ +IH V+SL F
Sbjct: 11 VGREFVRQYYTLLNKAPDFLHRFYGRNSSYVHGGLDASGKPQEAVYGQAEIHKKVMSLQF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGELSNNGQ-PMRKFMQTFVLAPEGSVPNKFYVHND 129
Query: 834 IFHFLDEEPVYQHPAPVL---SENKFDVQHDASSPIPEQAGLAASDYVLE 880
IF + DE V+ L SE + + + + P PE AS E
Sbjct: 130 IFRYEDE--VFGDSEGELDEESEEEVEEEQEERQPSPEPVQENASSTYYE 177
Score = 94 (38.1 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVC--YAFVEFEDISGVQNA 1092
++V NLP + E++E F +FG + V +R N K V G + FV F+D VQ
Sbjct: 333 LFVGNLPHDIDESELKEFFMSFGNV----VELRINTKGVGGKLPNFGFVVFDDSEPVQRI 388
Query: 1093 IQASPIQLAGR-QVYIEERR 1111
+ A PI G ++ +EE++
Sbjct: 389 LVAKPIMFRGEVRLNVEEKK 408
Score = 42 (19.8 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 989 PAPQPTTQQ--SNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVT 1046
P+P+P + S Y + +G+ + ES E + L E E K ++
Sbjct: 162 PSPEPVQENASSTYYENHPVTNGIEEALEESSHEP-EPEL---ESETKPEELKTEVEEKA 217
Query: 1047 AFEIEEEFQNFGRIKP 1062
E+EE+ + ++P
Sbjct: 218 LEELEEKSPSPPPVEP 233
Score = 41 (19.5 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 1009 GVSSHMPESGFEAVDDS 1025
GV +P GF DDS
Sbjct: 366 GVGGKLPNFGFVVFDDS 382
>UNIPROTKB|Q32LC7 [details] [associations]
symbol:G3BP "Ras GTPase-activating protein-binding protein
1" species:9913 "Bos taurus" [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0090090 "negative regulation of
canonical Wnt receptor signaling pathway" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0090305 GO:GO:0004386 GO:GO:0004519 InterPro:IPR018222
PROSITE:PS50177 EMBL:BC109645 IPI:IPI00693236 RefSeq:NP_001032700.1
UniGene:Bt.5197 ProteinModelPortal:Q32LC7 STRING:Q32LC7
PRIDE:Q32LC7 Ensembl:ENSBTAT00000027067 GeneID:534214
KEGG:bta:534214 CTD:10146 eggNOG:NOG324333
GeneTree:ENSGT00390000011365 HOGENOM:HOG000220838
HOVERGEN:HBG007211 InParanoid:Q32LC7 OMA:VVSNDME OrthoDB:EOG4XWFZ0
NextBio:20876309 ArrayExpress:Q32LC7 Uniprot:Q32LC7
Length = 465
Score = 193 (73.0 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 60/189 (31%), Positives = 91/189 (48%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD++H+FY SS + +D G ++ +IH V+S NF
Sbjct: 11 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
T +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V ND
Sbjct: 71 TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYVHND 129
Query: 834 IFHFLDEE--PVYQHPAPVLSENKFDVQHDASSP--IPEQAGLAASDYV---LEEEAREY 886
IF + DE P E + + +P +P+ +G V LEE E
Sbjct: 130 IFRYQDEVFGGFITEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEP 189
Query: 887 VSSVHIEDD 895
V+ E +
Sbjct: 190 VAEPEPEPE 198
Score = 83 (34.3 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ NLP V E+++ FQN+G + V +R + FV F+D VQ +
Sbjct: 341 LFIGNLPHEVDKSELKDFFQNYGNV----VELRINSGGKLPNFGFVVFDDSEPVQKVLSN 396
Query: 1096 SPIQLAGR-QVYIEERR 1111
PI G ++ +EE++
Sbjct: 397 RPIMFRGEVRLNVEEKK 413
>MGI|MGI:1351465 [details] [associations]
symbol:G3bp1 "GTPase activating protein (SH3 domain) binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0016020 "membrane"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IMP] InterPro:IPR000504
InterPro:IPR002075 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1351465 GO:GO:0005829
GO:GO:0005886 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006810 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0090305
GO:GO:0004386 GO:GO:0090090 GO:GO:0004519 GO:GO:0010494
InterPro:IPR018222 PROSITE:PS50177 CTD:10146 eggNOG:NOG324333
HOVERGEN:HBG007211 OMA:VVSNDME OrthoDB:EOG4XWFZ0 ChiTaRS:G3BP1
EMBL:AB001927 EMBL:BC021156 IPI:IPI00130095 RefSeq:NP_038744.1
UniGene:Mm.380129 UniGene:Mm.39631 UniGene:Mm.405739
ProteinModelPortal:P97855 SMR:P97855 STRING:P97855
PhosphoSite:P97855 PaxDb:P97855 PRIDE:P97855
Ensembl:ENSMUST00000018727 GeneID:27041 KEGG:mmu:27041
InParanoid:P97855 NextBio:304965 Bgee:P97855 Genevestigator:P97855
GermOnline:ENSMUSG00000018583 Uniprot:P97855
Length = 465
Score = 190 (71.9 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 56/186 (30%), Positives = 90/186 (48%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD++H+FY SS +D G ++ +IH V+S NF
Sbjct: 11 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKVMSQNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
T +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V ND
Sbjct: 71 TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYVHND 129
Query: 834 IFHFLDEE--PVYQHPAPVLSENKFDVQHDASSP--IPEQAGLAASDYVLEEEAREYVSS 889
IF + DE P E + + +P +P+ +G D + + E++
Sbjct: 130 IFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSG-TFYDQTVSNDLEEHLEE 188
Query: 890 VHIEDD 895
+E +
Sbjct: 189 PVVEPE 194
Score = 85 (35.0 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ NLP V E+++ FQNFG + V +R + FV F+D VQ +
Sbjct: 340 LFIGNLPHEVDKSELKDFFQNFGNV----VELRINSGGKLPNFGFVVFDDSEPVQKVLSN 395
Query: 1096 SPIQLAGR-QVYIEERR 1111
PI G ++ +EE++
Sbjct: 396 RPIMFRGAVRLNVEEKK 412
>UNIPROTKB|F1RQB6 [details] [associations]
symbol:G3BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090090 "negative regulation of canonical Wnt receptor
signaling pathway" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0006810
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000011365 OMA:VVSNDME EMBL:CU570659
Ensembl:ENSSSCT00000018595 Uniprot:F1RQB6
Length = 464
Score = 189 (71.6 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 58/182 (31%), Positives = 89/182 (48%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD++H+FY SS + +D G ++ +IH V++ NF
Sbjct: 10 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMAQNF 69
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
T +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V ND
Sbjct: 70 TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYVHND 128
Query: 834 IFHFLDEE--PVYQHPAPVLSENKFDVQHDASSP--IPEQAGLAASDYV---LEEEAREY 886
IF + DE P E + + +P +P+ +G V LEE E
Sbjct: 129 IFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEP 188
Query: 887 VS 888
V+
Sbjct: 189 VA 190
Score = 85 (35.0 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ NLP V E+++ FQN+G + V +R + FV F+D VQ +
Sbjct: 340 LFIGNLPHEVDKLELKDFFQNYGNV----VELRINSGGKLPNFGFVVFDDSEPVQKVLSN 395
Query: 1096 SPIQLAGR-QVYIEERR 1111
PI G ++ +EE++
Sbjct: 396 RPIMFRGEVRLNVEEKK 412
>UNIPROTKB|Q13283 [details] [associations]
symbol:G3BP1 "Ras GTPase-activating protein-binding protein
1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007265 "Ras
protein signal transduction" evidence=TAS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102
SMART:SM00360 EMBL:U32519 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0007265 GO:GO:0003677
GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0004003
GO:GO:0090305 GO:GO:0004519 InterPro:IPR018222 PROSITE:PS50177
GO:GO:0004004 CTD:10146 eggNOG:NOG324333 HOGENOM:HOG000220838
HOVERGEN:HBG007211 OMA:VVSNDME OrthoDB:EOG4XWFZ0 EMBL:BC006997
IPI:IPI00012442 RefSeq:NP_005745.1 RefSeq:NP_938405.1
UniGene:Hs.587054 PDB:3Q90 PDBsum:3Q90 ProteinModelPortal:Q13283
SMR:Q13283 IntAct:Q13283 MINT:MINT-5002789 STRING:Q13283
PhosphoSite:Q13283 DMDM:14916572 PaxDb:Q13283 PeptideAtlas:Q13283
PRIDE:Q13283 DNASU:10146 Ensembl:ENST00000356245
Ensembl:ENST00000394123 GeneID:10146 KEGG:hsa:10146 UCSC:uc003lum.3
GeneCards:GC05P151151 HGNC:HGNC:30292 HPA:HPA004052 MIM:608431
neXtProt:NX_Q13283 PharmGKB:PA162389105 InParanoid:Q13283
PhylomeDB:Q13283 ChiTaRS:G3BP1 GenomeRNAi:10146 NextBio:38391
ArrayExpress:Q13283 Bgee:Q13283 CleanEx:HS_G3BP1
Genevestigator:Q13283 GermOnline:ENSG00000145907 Uniprot:Q13283
Length = 466
Score = 195 (73.7 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 55/178 (30%), Positives = 88/178 (49%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD++H+FY SS + +D G ++ +IH V+S NF
Sbjct: 11 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
T +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V ND
Sbjct: 71 TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYVHND 129
Query: 834 IFHFLDEE--PVYQHPAPVLSENKFDVQHDASSP--IPEQAGLAASDYVLEEEAREYV 887
IF + DE P E + + +P +P+ +G V+ + E++
Sbjct: 130 IFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQAVVSNDMEEHL 187
Score = 78 (32.5 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ NLP V E+++ FQ++G + V +R + FV F+D VQ +
Sbjct: 342 LFIGNLPHEVDKSELKDFFQSYGNV----VELRINSGGKLPNFGFVVFDDSEPVQKVLSN 397
Query: 1096 SPIQLAGR-QVYIEERR 1111
PI G ++ +EE++
Sbjct: 398 RPIMFRGEVRLNVEEKK 414
>UNIPROTKB|E2RN45 [details] [associations]
symbol:G3BP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006810 "transport" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000011365 OMA:VVSNDME EMBL:AAEX03003083
Ensembl:ENSCAFT00000028303 Uniprot:E2RN45
Length = 441
Score = 192 (72.6 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 59/182 (32%), Positives = 89/182 (48%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD++H+FY SS + +D G ++ +IH V+S NF
Sbjct: 11 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
T +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V ND
Sbjct: 71 TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYVHND 129
Query: 834 IFHFLDEE--PVYQHPAPVLSENKFDVQHDASSP--IPEQAGLAASDYV---LEEEAREY 886
IF + DE P E + + +P +P+ +G V LEE E
Sbjct: 130 IFRYQDEVFGGFVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQSVSNDLEEHLEEP 189
Query: 887 VS 888
V+
Sbjct: 190 VA 191
Score = 78 (32.5 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ NLP V E+++ FQ++G + V +R + FV F+D VQ +
Sbjct: 341 LFIGNLPHEVDKSELKDFFQSYGNV----VELRINSGGKLPNFGFVVFDDSEPVQKVLSN 396
Query: 1096 SPIQLAGR-QVYIEERR 1111
PI G ++ +EE++
Sbjct: 397 RPIMFRGEVRLNVEEKK 413
>ZFIN|ZDB-GENE-040426-2698 [details] [associations]
symbol:zgc:56304 "zgc:56304" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2698 GO:GO:0000166 GO:GO:0006810
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 InterPro:IPR018222
PROSITE:PS50177 eggNOG:NOG324333 HOGENOM:HOG000220838
HOVERGEN:HBG007211 OrthoDB:EOG4XWFZ0 EMBL:BC097071 IPI:IPI00772318
UniGene:Dr.31694 ProteinModelPortal:Q4V942 STRING:Q4V942
InParanoid:Q4V942 ArrayExpress:Q4V942 Uniprot:Q4V942
Length = 501
Score = 179 (68.1 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 55/169 (32%), Positives = 88/169 (52%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + PD +H+FY SS + +D G E+ +IH V+SL F
Sbjct: 11 VGREFVRQYYTLLNKAPDYLHRFYGRNSSYVHGGLDSNGKPEEAVYGQAEIHKKVMSLQF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKG---YFVLND 833
+ +I+ +++ + GV+V V G + RR F+QTF LAP+ ++V ND
Sbjct: 71 SECHTKIRHVDAHATLGDGVVVQVMGELSNSGRPMRR-FMQTFVLAPEGSAVNKFYVHND 129
Query: 834 IFHFLDEEPVYQHPAPVLSENKFD-VQHDA----SSPIPEQAGLAASDY 877
IF + EE V+ L E++ + V+ + +SP P Q +++ Y
Sbjct: 130 IFRY--EEEVFGDSEAELGESEEEEVEEEPVETHASPEPAQDRPSSTTY 176
Score = 89 (36.4 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVC--YAFVEFEDISGVQNA 1092
++V NLP + E+++ F FG + V +R N K V G + FV F+D VQ
Sbjct: 365 LFVGNLPHDIDEGELKDFFMTFGNV----VEMRINTKGVGGKLPNFGFVVFDDSDPVQRI 420
Query: 1093 IQASPIQLAGR-QVYIEERR 1111
+ A PI G ++ +EE++
Sbjct: 421 LGAKPIMFRGEVRLNVEEKK 440
Score = 44 (20.5 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 990 APQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDD 1024
+P+P + + T+ + P VS+ + E EAV +
Sbjct: 163 SPEPAQDRPSSTTYYEPPPPVSNGVEEQQEEAVPE 197
Score = 42 (19.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 999 NYTSSFVPESGVSSHMPESGFEAVDDS 1025
N + GV +P GF DDS
Sbjct: 388 NVVEMRINTKGVGGKLPNFGFVVFDDS 414
>ZFIN|ZDB-GENE-030131-7452 [details] [associations]
symbol:g3bp1 "GTPase activating protein (SH3
domain) binding protein 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR000504
InterPro:IPR002075 InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-7452
GO:GO:0000166 GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177 HSSP:P09651
CTD:10146 HOVERGEN:HBG007211 EMBL:BC045874 IPI:IPI00501560
RefSeq:NP_956250.1 UniGene:Dr.7036 ProteinModelPortal:Q7ZVG3
STRING:Q7ZVG3 GeneID:335512 KEGG:dre:335512 NextBio:20810882
ArrayExpress:Q7ZVG3 Uniprot:Q7ZVG3
Length = 477
Score = 184 (69.8 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 54/182 (29%), Positives = 91/182 (50%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD +H+FY SS + +D G E+ +IH V++L+F
Sbjct: 11 VGREFVRQYYTLLNQAPDYLHRFYGKNSSYVHGGLDNNGKPAEAVYGQSEIHKKVMALSF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+I+ +++ + N GV+V V G + + RKF+QTF LAP+ ++V ND
Sbjct: 71 RDCHTKIRHVDAHATLNEGVVVQVLGGL-SNNMQPMRKFMQTFVLAPEGTVANKFYVHND 129
Query: 834 IFHFLDEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSVHIE 893
IF + DE V ++ + ++ + E + + + V EE + Y + +E
Sbjct: 130 IFRYQDE---------VFGDSDSEPPEESEEDVEELERVHSPEVVQEESSGYYEQTPCVE 180
Query: 894 DD 895
+
Sbjct: 181 PE 182
Score = 82 (33.9 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 38/155 (24%), Positives = 68/155 (43%)
Query: 959 ILRVSKSQSTSFVATQPSFTKTASTTSDWNPAPQ-PTTQQSNYTSSFVPESGVSSHMPES 1017
++RV +Q V T+ T D P Q P ++ T P GV ES
Sbjct: 275 VVRVPSAQPRVEVKTETQ-TTAQRPQRDQRPRDQRPGPSPAHRT----PRPGVVRE-GES 328
Query: 1018 GFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC 1077
G V ++ + ++V N+P V E++E F+ +G + + + + +
Sbjct: 329 GESEVRRTVRYPDSH--QLFVGNVPHDVDKNELKEFFEQYGTVLE--LRINSGGKLPN-- 382
Query: 1078 YAFVEFEDISGVQNAIQASPIQLAGR-QVYIEERR 1111
+ FV F+D VQ + PI+L G ++ +EE++
Sbjct: 383 FGFVVFDDSEPVQKILNNRPIKLRGDVRLNVEEKK 417
>ZFIN|ZDB-GENE-040426-1997 [details] [associations]
symbol:cstf3 "cleavage stimulation factor, 3'
pre-RNA, subunit 3" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
ZFIN:ZDB-GENE-040426-1997 GO:GO:0005634 GO:GO:0006397
Gene3D:1.25.40.10 CTD:1479 HOGENOM:HOG000231786 HOVERGEN:HBG053813
KO:K14408 EMBL:BC045871 IPI:IPI00497601 RefSeq:NP_998218.2
UniGene:Dr.104620 ProteinModelPortal:Q7ZVG5 SMR:Q7ZVG5
STRING:Q7ZVG5 PRIDE:Q7ZVG5 GeneID:406326 KEGG:dre:406326
InParanoid:Q7ZVG5 NextBio:20817950 ArrayExpress:Q7ZVG5 Bgee:Q7ZVG5
Uniprot:Q7ZVG5
Length = 716
Score = 178 (67.7 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 48/175 (27%), Positives = 87/175 (49%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N D AW+ L+ E + D K R+ Y+ +A+FP +WK Y + E + +
Sbjct: 25 LEENPYDLDAWSILIREAQNQPID---KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY 81
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-P---ETIRRLFERGLAYVGTDYLSF 207
DKV ++++R + V + +D+W Y + T G P E + + ++ L +G + +S+
Sbjct: 82 DKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMPQAYDFALDKIGMEIMSY 140
Query: 208 PLWDKYIEY--------EYMQ-QEWSRVAMIYTRILENP---IQQLDRYFSSFKE 250
+W YI + Y + Q + V +Y R NP I+QL R +S ++E
Sbjct: 141 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYSKYEE 195
Score = 93 (37.8 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 73/348 (20%), Positives = 133/348 (38%)
Query: 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE----RDGDFNKVVK----L 378
AKE+++ + G + P ++E W Y+ + + R D + K
Sbjct: 220 AKEYETVMKGLDRNAPSVPPQNSPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFA 279
Query: 379 YERCLIACANYPEYWIRYVLCMEAS-------GSM-------DLAHNALARATHVFVKRL 424
YE+CL+ ++P+ W +E S G M D A N RA +K+
Sbjct: 280 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIGTLLKKN 339
Query: 425 PEIHLFAARFKEQNGDIDGARAAYQ--LVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 482
++ A ++E + + Y L + P L+ I++ RR ++ S+
Sbjct: 340 MLLYFSFADYEESRMKHEKVHSIYNRLLAIEDIDPTLV--YIQYMKFARRAEGIKSGRSI 397
Query: 483 YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALI 542
+++A +E +T +Y + + S++ A +I L + E ++
Sbjct: 398 FKKA------REDPRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---DIPEYIL 448
Query: 543 HFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKK 602
+ S + + L ++ L S S SP + E+ FL F GD I K
Sbjct: 449 AYIDYLSHLNEDNNTRVLFERVLTSGSLSPEKSG-----EIWARFLAFESNIGDLASILK 503
Query: 603 AEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSL 650
E R F+ + E + E L +R K Y +PS ++L
Sbjct: 504 VERRR---FMAFKDEYEGK----ETALLVDRYKFMDLYPCSPSELKAL 544
>UNIPROTKB|Q5ZMN1 [details] [associations]
symbol:G3BP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0090090
"negative regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002075
InterPro:IPR012677 Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0006810
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR018222 PROSITE:PS50177
CTD:10146 eggNOG:NOG324333 GeneTree:ENSGT00390000011365
HOGENOM:HOG000220838 HOVERGEN:HBG007211 OrthoDB:EOG4XWFZ0
EMBL:AADN02028650 EMBL:AADN02028651 EMBL:AADN02028652 EMBL:AJ719353
IPI:IPI00593144 RefSeq:NP_001006150.1 UniGene:Gga.4912
STRING:Q5ZMN1 Ensembl:ENSGALT00000006615 GeneID:416265
KEGG:gga:416265 InParanoid:Q5ZMN1 OMA:RNDGGEN NextBio:20819751
Uniprot:Q5ZMN1
Length = 472
Score = 190 (71.9 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 48/127 (37%), Positives = 71/127 (55%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD +H+FY SS + +D G ++ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNQAPDYLHRFYGKNSSYVHGGLDSNGKPADAVYGQSDIHKKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+I+ +++ + N GV+V V G + + R+F+QTF LAP+ ++V ND
Sbjct: 71 KDCHTKIRHVDAHATLNDGVVVQVMGEL-SNNMQPVRRFMQTFVLAPEGSVANKFYVHND 129
Query: 834 IFHFLDE 840
IF + DE
Sbjct: 130 IFRYQDE 136
Score = 75 (31.5 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNA 1092
++V NLP V E+++ FQ G + G V R + G + FV F+D VQ
Sbjct: 341 LFVGNLPHDVDKSELKDFFQKLGSSLAGYGNVVELRINSGGKLPNFGFVVFDDPDPVQKI 400
Query: 1093 IQASPIQLAGR-QVYIEERR 1111
+ PI G ++ +EE++
Sbjct: 401 LSNRPIMFRGEVRLNVEEKK 420
Score = 37 (18.1 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 983 TTSDWNPAPQPTTQQ 997
TT++ P P+P +Q
Sbjct: 189 TTAEAEPEPEPEPEQ 203
>CGD|CAL0001111 [details] [associations]
symbol:PRP42 species:5476 "Candida albicans" [GO:0003723 "RNA
binding" evidence=IEA;ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0005685 "U1 snRNP"
evidence=IEA;ISO] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] InterPro:IPR003107 SMART:SM00386 CGD:CAL0001111
GO:GO:0003723 eggNOG:COG0457 GO:GO:0000398 EMBL:AACQ01000091
EMBL:AACQ01000090 GO:GO:0005685 RefSeq:XP_715099.1
RefSeq:XP_715150.1 ProteinModelPortal:Q5A014 GeneID:3643177
GeneID:3643241 KEGG:cal:CaO19.11852 KEGG:cal:CaO19.4374
Uniprot:Q5A014
Length = 393
Score = 163 (62.4 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
Identities = 41/167 (24%), Positives = 80/167 (47%)
Query: 98 DFSAWTALLEETE---------KLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV 148
+F W +L+E E +++ + +R Y++FL +FP + YW +YA+ E ++
Sbjct: 21 NFELWQSLIEAAEWNEKRGINKSTSEEELNVLRTSYNSFLEKFPFQFKYWIRYAEWEFKL 80
Query: 149 GSMDKVVEVYERAVQG-VTYSVDIWLHYCIFAINTYGDP-ETIRRLFERGLAYVGTDYLS 206
G+ ++Y R + +++ +++W+ Y F INT D I + FE +G +
Sbjct: 81 GNTSTAEQIYLRGLNTQLSHCIELWISYLNFKINTINDNISEILQKFEAARDLIGFHFFG 140
Query: 207 FPLWDKYIE----YEYMQQEWSRVAMIYTRI-LENPIQQLDRYFSSF 248
F ++ Y+ Y+ E+ + I RI LE PI ++ +
Sbjct: 141 FEFYELYLSFLDNYKNDNNEFEKKYYILLRIILEIPIYHYGIFYKKW 187
Score = 82 (33.9 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN 373
+ YIA + ++ EF+ K+I + P S EL+ W +Y+D++E
Sbjct: 235 DAYIATQYHSFE-LYEFEKKLIPKNN--KNPQQDNDLRSRQELDAWMSYIDYLEIKQYPI 291
Query: 374 KVVKL-YERCLIACANYPEYWIRY 396
K ++L Y R L NYP+ W ++
Sbjct: 292 KFIELVYYRFLYNARNYPQTWSKF 315
Score = 49 (22.3 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
Identities = 17/79 (21%), Positives = 43/79 (54%)
Query: 495 HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES-IQSSPKQ 553
+++ P +++++ + ++ KAR+IL D + +V K L++ L+ E +++ +
Sbjct: 304 NARNYPQTWSKFADY-YIYHAKFNKARKILTDGVKYVDDYKLLIK-LVDLEIFLKNYQRA 361
Query: 554 IDFLEQLVDKFLMSNSDSP 572
I+ L+ ++ NS+ P
Sbjct: 362 IN----LLISYIQYNSNVP 376
Score = 40 (19.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 307 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 366
L +EL+ +++ + Y + K++ K I E R ++ + T W + D+
Sbjct: 268 LRSRQELDAWMSYID--YLEIKQYPIKFI--ELVYYRFLYNARNYPQT----WSKFADYY 319
Query: 367 ERDGDFNKVVKL 378
FNK K+
Sbjct: 320 IYHAKFNKARKI 331
>UNIPROTKB|Q5A014 [details] [associations]
symbol:PRP42 "Potential spliceosomal U1 snRNP protein"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005685 "U1 snRNP" evidence=ISO]
InterPro:IPR003107 SMART:SM00386 CGD:CAL0001111 GO:GO:0003723
eggNOG:COG0457 GO:GO:0000398 EMBL:AACQ01000091 EMBL:AACQ01000090
GO:GO:0005685 RefSeq:XP_715099.1 RefSeq:XP_715150.1
ProteinModelPortal:Q5A014 GeneID:3643177 GeneID:3643241
KEGG:cal:CaO19.11852 KEGG:cal:CaO19.4374 Uniprot:Q5A014
Length = 393
Score = 163 (62.4 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
Identities = 41/167 (24%), Positives = 80/167 (47%)
Query: 98 DFSAWTALLEETE---------KLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV 148
+F W +L+E E +++ + +R Y++FL +FP + YW +YA+ E ++
Sbjct: 21 NFELWQSLIEAAEWNEKRGINKSTSEEELNVLRTSYNSFLEKFPFQFKYWIRYAEWEFKL 80
Query: 149 GSMDKVVEVYERAVQG-VTYSVDIWLHYCIFAINTYGDP-ETIRRLFERGLAYVGTDYLS 206
G+ ++Y R + +++ +++W+ Y F INT D I + FE +G +
Sbjct: 81 GNTSTAEQIYLRGLNTQLSHCIELWISYLNFKINTINDNISEILQKFEAARDLIGFHFFG 140
Query: 207 FPLWDKYIE----YEYMQQEWSRVAMIYTRI-LENPIQQLDRYFSSF 248
F ++ Y+ Y+ E+ + I RI LE PI ++ +
Sbjct: 141 FEFYELYLSFLDNYKNDNNEFEKKYYILLRIILEIPIYHYGIFYKKW 187
Score = 82 (33.9 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN 373
+ YIA + ++ EF+ K+I + P S EL+ W +Y+D++E
Sbjct: 235 DAYIATQYHSFE-LYEFEKKLIPKNN--KNPQQDNDLRSRQELDAWMSYIDYLEIKQYPI 291
Query: 374 KVVKL-YERCLIACANYPEYWIRY 396
K ++L Y R L NYP+ W ++
Sbjct: 292 KFIELVYYRFLYNARNYPQTWSKF 315
Score = 49 (22.3 bits), Expect = 5.0e-13, Sum P(3) = 5.0e-13
Identities = 17/79 (21%), Positives = 43/79 (54%)
Query: 495 HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES-IQSSPKQ 553
+++ P +++++ + ++ KAR+IL D + +V K L++ L+ E +++ +
Sbjct: 304 NARNYPQTWSKFADY-YIYHAKFNKARKILTDGVKYVDDYKLLIK-LVDLEIFLKNYQRA 361
Query: 554 IDFLEQLVDKFLMSNSDSP 572
I+ L+ ++ NS+ P
Sbjct: 362 IN----LLISYIQYNSNVP 376
Score = 40 (19.1 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 307 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 366
L +EL+ +++ + Y + K++ K I E R ++ + T W + D+
Sbjct: 268 LRSRQELDAWMSYID--YLEIKQYPIKFI--ELVYYRFLYNARNYPQT----WSKFADYY 319
Query: 367 ERDGDFNKVVKL 378
FNK K+
Sbjct: 320 IYHAKFNKARKI 331
>DICTYBASE|DDB_G0286645 [details] [associations]
symbol:cstf3 "cleavage stimulation factor subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF05843 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0286645
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0006378 GO:GO:0003723
EMBL:AAFI02000089 Gene3D:1.25.40.10 GO:GO:0006379 eggNOG:COG5107
KO:K14408 RefSeq:XP_637594.1 ProteinModelPortal:Q54LG7 PRIDE:Q54LG7
EnsemblProtists:DDB0233707 GeneID:8625734 KEGG:ddi:DDB_G0286645
InParanoid:Q54LG7 OMA:MARDIFE ProtClustDB:CLSZ2430079
Uniprot:Q54LG7
Length = 1065
Score = 184 (69.8 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 50/183 (27%), Positives = 85/183 (46%)
Query: 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRR-VYDAFLAEFPLCYGYWKKYADH 144
+ L N + + D AWT LL E Q + I R +Y FL+ FP YWK Y +
Sbjct: 166 ETLENRINNDMYDTEAWTLLLNEV----QSQPISIARDIYKRFLSVFPTAGRYWKLYVEE 221
Query: 145 EARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDP----ETIRRLFERGLAYV 200
E + + D V +++ ++ V +V+ W Y + GD E I + FE L +
Sbjct: 222 EMKEKNYDIVEKIFFENLRSVK-NVEFWKSYIAYIKQIKGDKVENREEIIKAFEFALESI 280
Query: 201 GTDYLSFPLWDKYIEY--------EYMQ-QEWSRVAMIYTRILENPIQQLDRYFSSFKEF 251
G D S +W YI++ ++ + Q+ + + +Y R +ENP+ LD + ++ +
Sbjct: 281 GMDISSTSIWTDYIQFLKDEKASTQFEEGQKMTAIRKLYQRAIENPMHDLDNIYKEYEVY 340
Query: 252 AAS 254
S
Sbjct: 341 ENS 343
Score = 79 (32.9 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 373 NKVVKLYERCLIACANYPEYWIR---YVL-CMEASGSMDLAHNAL-ARATHVFVKRLPEI 427
N+V+ Y +CL+ +YP+ W Y+ C ++SG + + +L A ++F I
Sbjct: 420 NRVIATYNQCLLCLYHYPDIWYEAATYLADCGDSSGCIAMFDRSLIALPKNLF------I 473
Query: 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 486
H A + E A+ Y+ + + +P L I++ RR +E ++++A
Sbjct: 474 HFAYADYLESQKKQPQAKEIYEKI-LQANPEPL-VWIQYMKFSRRTERIEGPRKIFKRA 530
Score = 44 (20.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 45/234 (19%), Positives = 84/234 (35%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 418
W+ ++ GD + + +++R LIA Y +E+ A +
Sbjct: 440 WYEAATYLADCGDSSGCIAMFDRSLIALPKNLFIHFAYADYLESQKKQPQAKEIYEKILQ 499
Query: 419 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV--------HTETSPGLLEAIIKHANME 470
+ P + + +F + I+G R ++ H + GL+E I N +
Sbjct: 500 ANPE--PLVWIQYMKFSRRTERIEGPRKIFKRAKSTPDCTYHVYIALGLIEYYI---NQD 554
Query: 471 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL-- 528
R+ D F I ++K + Y FL + N E ++L + L
Sbjct: 555 TRMAR--DIFE-----IGLKKFPSEIAFVNF----YIEFL--TNLNEENNTRVLFEKLLT 601
Query: 529 -DHVQLSKPLLEALIHFESIQSSP-KQIDFLEQLVDKFLMSNSDSPSTANAAER 580
++ S+ + + FE Q+ I LE+ + SN+D A R
Sbjct: 602 WPSLEKSESIWRKFLDFEYRQNQDVSSILKLEKRYQVTVNSNTDKSGVLQALNR 655
>UNIPROTKB|F1LVS8 [details] [associations]
symbol:F1LVS8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006810 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000011365 IPI:IPI00561182
Ensembl:ENSRNOT00000002166 Uniprot:F1LVS8
Length = 439
Score = 185 (70.2 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 55/164 (33%), Positives = 85/164 (51%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+F+ SS + VD G E+ DIH ++SLNF
Sbjct: 15 VGREFVRQYYTLLNRAPEYLHRFFGRNSSYVHGGVDASGKPQEAVYGQNDIHYKMLSLNF 74
Query: 779 TAIEIKT--INSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ K +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 75 SECHTKICHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAPEGSVPNKFYVHND 133
Query: 834 IFHFLDEEPVYQHPAPVLSENKFDVQHDASSP-IPEQAGLAASD 876
+F + DE V+ P L E + + ++ SP + E A A D
Sbjct: 134 MFRYEDE--VFGDSEPELDEVEEEQENRQPSPEVQENANSAYYD 175
Score = 64 (27.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 19/78 (24%), Positives = 38/78 (48%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNAI 1093
++V NLP + E++E F +FG + + N K V G + FV F+D +Q +
Sbjct: 292 LFVGNLPHDIDENELKEFFMHFGNVVELHI---NTKGVGGKLPNFGFVVFDDSEPLQRIL 348
Query: 1094 QASPIQLAGRQVYIEERR 1111
+ + + +E+++
Sbjct: 349 IENQLCFGEVHLNVEKKK 366
Score = 43 (20.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 999 NYTSSFVPESGVSSHMPESGFEAVDDS 1025
N + GV +P GF DDS
Sbjct: 315 NVVELHINTKGVGGKLPNFGFVVFDDS 341
>FB|FBgn0015778 [details] [associations]
symbol:rin "rasputin" species:7227 "Drosophila melanogaster"
[GO:0017124 "SH3 domain binding" evidence=ISS] [GO:0001752
"compound eye photoreceptor fate commitment" evidence=IMP]
[GO:0007265 "Ras protein signal transduction" evidence=IGI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0016318 "ommatidial
rotation" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0005811 "lipid particle" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002075 InterPro:IPR012677 Pfam:PF02136 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0007265 GO:GO:0000166
GO:GO:0005811 GO:GO:0006810 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0001752
InterPro:IPR018222 PROSITE:PS50177 GO:GO:0016318 eggNOG:NOG324333
HSSP:P33331 EMBL:AF231031 ProteinModelPortal:Q9NH72 SMR:Q9NH72
IntAct:Q9NH72 STRING:Q9NH72 PaxDb:Q9NH72 PRIDE:Q9NH72
FlyBase:FBgn0015778 InParanoid:Q9NH72 OrthoDB:EOG42RBPK
ArrayExpress:Q9NH72 Bgee:Q9NH72 Uniprot:Q9NH72
Length = 690
Score = 183 (69.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 55/168 (32%), Positives = 86/168 (51%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI- 781
VG FV QYY +L + P+ +H+FY+ SS I G+S + +IH+ + LNF
Sbjct: 16 VGREFVRQYYTLLNKAPNHLHRFYNHNSSYIH--GES-KLVVGQREIHNRIQQLNFNDCH 72
Query: 782 -EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFLD 839
+I +++ + GV+V V+G + + + R+F QTF LA Q K Y+V NDIF + D
Sbjct: 73 AKISQVDAQATLGNGVVVQVTGEL-SNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQD 131
Query: 840 EEPVYQHPAPVLSENKFDVQHDAS--SPIPEQAGLAASDYVLEEEARE 885
+ SEN D +HD +QA A D V ++ ++
Sbjct: 132 LYIEDEQDGESRSEN--DEEHDVQVVGGTVDQAVQVAGDVVAQQPQQQ 177
Score = 73 (30.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 31/150 (20%), Positives = 66/150 (44%)
Query: 973 TQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEGE 1032
+Q S++ TAS+ ++ N ++ N +P+ S + FE S G+
Sbjct: 438 SQVSYSTTASSYNNSNG----NSRLDN--GGPLPQRNNSIRNNKGDFEQRRSSNTQQFGD 491
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVC----YAFVEFEDIS 1087
+ +++ N+P + ++ E F FG + + + K G+ Y F+ ++D
Sbjct: 492 NQQLFLGNIPHHASEDDLREIFSRFGNVLELRILSKAGNKVPPGMRSPLNYGFITYDDPE 551
Query: 1088 GVQNAIQASPIQLA-----GRQVYIEERRP 1112
VQ + P+ G+++ +EE++P
Sbjct: 552 AVQKCLANCPLYFPENSPDGQKLNVEEKKP 581
Score = 42 (19.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 19/79 (24%), Positives = 29/79 (36%)
Query: 954 KTYASILRVSKSQSTSFV-ATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSS 1012
KTYA++ + + S + FV A + T S+ TS S VS
Sbjct: 383 KTYANLFKSTSSSPSGFVNAALQQQQQLQQQQQQQQSISSNTYNSSSATSGGGNGSQVSY 442
Query: 1013 HMPESGFEAVDDSLGLDEG 1031
S + + + LD G
Sbjct: 443 STTASSYNNSNGNSRLDNG 461
>UNIPROTKB|D6RAC7 [details] [associations]
symbol:G3BP2 "Ras GTPase-activating protein-binding protein
2" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30291 EMBL:AC104828
IPI:IPI00966108 ProteinModelPortal:D6RAC7 SMR:D6RAC7
Ensembl:ENST00000507745 HOGENOM:HOG000138029 ArrayExpress:D6RAC7
Bgee:D6RAC7 Uniprot:D6RAC7
Length = 141
Score = 179 (68.1 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 47/127 (37%), Positives = 71/127 (55%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+ ++V ND
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAPEGSVPNKFYVHND 129
Query: 834 IFHFLDE 840
+F + DE
Sbjct: 130 MFRYEDE 136
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 143 (55.4 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 37/135 (27%), Positives = 67/135 (49%)
Query: 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH 174
+N+ R+V++ ++ P W+ Y + E R +D+ E+YER V V V W+
Sbjct: 158 ENVAGARQVFERWMEWQPEEQA-WQTYVNFELRYKEIDRAREIYERFVY-VHPDVKNWIK 215
Query: 175 YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234
+ F ++G RR+FER + + G DY+ L+ + +E Q+E R +IY L
Sbjct: 216 FARFE-ESHGFIHGSRRVFERAVEFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYAL 274
Query: 235 EN-PIQQLDRYFSSF 248
++ P + F ++
Sbjct: 275 DHLPKDRTQELFKAY 289
Score = 109 (43.4 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 59/248 (23%), Positives = 114/248 (45%)
Query: 321 EEMYKKAKEFDSKI---IGFETAI--RRPYFHVKPLSV--TELENWHNYLDFIERDGDFN 373
+E++K + + K G E I +R Y + + ++ T + W +YL IE +GD +
Sbjct: 283 QELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRD 342
Query: 374 KVVKLYERCL--IACANYPEYWIRYV-LCMEASGSMDLAHNALARATHVF---VKRLP-- 425
++ + YER + + AN +W RY+ L + + +L R ++ ++ +P
Sbjct: 343 QIRETYERAISNVPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELIPHK 402
Query: 426 -----EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK-HANMERRLGNLEDA 479
++ L A+F+ + ++ AR A L P + + + + ++E +L E
Sbjct: 403 QFTFSKLWLLYAQFEIRCKELQRARKALGLA-IGMCPR--DKLFRGYIDLEIQLREFERC 459
Query: 480 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP--L 537
LYE+ + E G E+ T M +A+ L + ++AR I ++ +L P L
Sbjct: 460 RMLYEKFL--EFGPENCVTW-MKFAELENLLG----DTDRARAIFELAVQQPRLDMPELL 512
Query: 538 LEALIHFE 545
+A I FE
Sbjct: 513 WKAYIDFE 520
Score = 99 (39.9 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 42/174 (24%), Positives = 76/174 (43%)
Query: 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALA 414
E + W Y++F R + ++ ++YER + + WI++ E+ G + +
Sbjct: 176 EEQAWQTYVNFELRYKEIDRAREIYERFVYVHPDVKN-WIKFARFEESHGFIHGSRRVFE 234
Query: 415 RATHVFVKRLPEIHLFAA--RFKEQNGDIDGARAAYQ--LVHT--ETSPGLLEAIIKHAN 468
RA F E LF A RF+E + D AR Y+ L H + + L +A KH
Sbjct: 235 RAVEFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKH-- 292
Query: 469 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTL---PMLYAQYSRFLHLVSRNAEK 519
E++ G D + E I ++ ++ Q + P Y + +L L+ ++
Sbjct: 293 -EKKYG---DRAGI-EDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDR 341
Score = 89 (36.4 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 32/144 (22%), Positives = 62/144 (43%)
Query: 121 RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 180
R+ ++ L + + +W KYA E + + + ++ERA+ +V +WL Y +
Sbjct: 62 RKTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEM 121
Query: 181 NTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE-NPIQ 239
R L++R + + F W KY E M + + ++ R +E P +
Sbjct: 122 KNK-QVNHARNLWDRAVTIMPR-VNQF--WYKYTYMEEMLENVAGARQVFERWMEWQPEE 177
Query: 240 QLDRYFSSF----KEFAASRPLSE 259
Q + + +F KE +R + E
Sbjct: 178 QAWQTYVNFELRYKEIDRAREIYE 201
Score = 84 (34.6 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 30/143 (20%), Positives = 57/143 (39%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N S W + E+ Q I + R +++ L W KYA+ E + +
Sbjct: 69 LRKNRMVVSHWIKYAQWEEQ--QQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQV 126
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWD 211
+ +++RAV + W Y + + R++FER + + + W
Sbjct: 127 NHARNLWDRAVTIMPRVNQFWYKYT-YMEEMLENVAGARQVFERWMEWQPEEQA----WQ 181
Query: 212 KYIEYEYMQQEWSRVAMIYTRIL 234
Y+ +E +E R IY R +
Sbjct: 182 TYVNFELRYKEIDRAREIYERFV 204
Score = 62 (26.9 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 28/104 (26%), Positives = 44/104 (42%)
Query: 337 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396
FE A+++P L + EL W Y+DF G+ +LYER L+ + + W+ +
Sbjct: 497 FELAVQQPR-----LDMPELL-WKAYIDFEVALGETELARQLYER-LLERTQHVKVWMSF 549
Query: 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 440
A M L+H + V+ I+ A Q GD
Sbjct: 550 -----AKFEMGLSHGDSGPDAELNVQLARRIYERANEMLRQLGD 588
>MGI|MGI:1351825 [details] [associations]
symbol:Cstf3 "cleavage stimulation factor, 3' pre-RNA,
subunit 3" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843
SMART:SM00386 MGI:MGI:1351825 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF EMBL:BC003241 IPI:IPI00116929
RefSeq:NP_663504.1 UniGene:Mm.259876 UniGene:Mm.479443 PDB:2OND
PDB:2OOE PDBsum:2OND PDBsum:2OOE ProteinModelPortal:Q99LI7
SMR:Q99LI7 STRING:Q99LI7 PhosphoSite:Q99LI7 PaxDb:Q99LI7
PRIDE:Q99LI7 Ensembl:ENSMUST00000028599 GeneID:228410
KEGG:mmu:228410 GeneTree:ENSGT00390000006758 InParanoid:Q99LI7
ChiTaRS:CSTF3 EvolutionaryTrace:Q99LI7 NextBio:378988 Bgee:Q99LI7
Genevestigator:Q99LI7 GermOnline:ENSMUSG00000027176 Uniprot:Q99LI7
Length = 717
Score = 180 (68.4 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 53/202 (26%), Positives = 97/202 (48%)
Query: 65 SGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVY 124
SG AA ++ + + E +L + N D AW+ L+ E + D K R+ Y
Sbjct: 2 SGDAAAEQAAEYVPEKVKKAEKKL----EENPYDLDAWSILIREAQNQPID---KARKTY 54
Query: 125 DAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG 184
+ +A+FP +WK Y + E + + DKV ++++R + V + +D+W Y + T G
Sbjct: 55 ERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKG 113
Query: 185 D-P---ETIRRLFERGLAYVGTDYLSFPLWDKYIEY--------EYMQ-QEWSRVAMIYT 231
P E + + ++ L +G + +S+ +W YI + Y + Q + V +Y
Sbjct: 114 KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 173
Query: 232 RILENP---IQQLDRYFSSFKE 250
R NP I+QL R ++ ++E
Sbjct: 174 RGCVNPMINIEQLWRDYNKYEE 195
Score = 79 (32.9 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 63/310 (20%), Positives = 119/310 (38%)
Query: 327 AKEFDSKIIGFE-TAIRRPYFHVKPLSVTELENWHNYLDFIE----RDGDFNKVVK---- 377
AKE+++ + G + A P + P +++ W Y+ + + R D + K
Sbjct: 220 AKEYETVMKGLDRNAPSVPPQNT-PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 278
Query: 378 LYERCLIACANYPEYWIRYVLCMEAS-------GSM-------DLAHNALARATHVFVKR 423
YE+CL+ ++P+ W +E S G M D A N RA +K+
Sbjct: 279 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 338
Query: 424 LPEIHLFAARFKEQNGDIDGARAAYQ--LVHTETSPGLLEAIIKHANMERRLGNLEDAFS 481
++ A ++E + + Y L + P L+ I++ RR ++
Sbjct: 339 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV--YIQYMKFARRAEGIKSGRM 396
Query: 482 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541
++++A +E ++T +Y + + S++ A +I L + E +
Sbjct: 397 IFKKA------REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---DIPEYV 447
Query: 542 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIK 601
+ + S + + L ++ L S S P + E+ FL F GD I
Sbjct: 448 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG-----EIWARFLAFESNIGDLASIL 502
Query: 602 KAEDRHARLF 611
K E R F
Sbjct: 503 KVEKRRFTAF 512
Score = 37 (18.1 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 957 ASILRVSKSQSTSF 970
ASIL+V K + T+F
Sbjct: 499 ASILKVEKRRFTAF 512
>UNIPROTKB|E2R479 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 CTD:1479 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:AAEX03011399 RefSeq:XP_533159.2
ProteinModelPortal:E2R479 Ensembl:ENSCAFT00000011665 GeneID:475948
KEGG:cfa:475948 NextBio:20851693 Uniprot:E2R479
Length = 717
Score = 176 (67.0 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 47/175 (26%), Positives = 87/175 (49%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N D AW+ L+ E + D K R+ Y+ +A+FP +WK Y + E + +
Sbjct: 25 LEENPYDLDAWSILIREAQNQPID---KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY 81
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-P---ETIRRLFERGLAYVGTDYLSF 207
DKV ++++R + V + +D+W Y + T G P E + + ++ L +G + +S+
Sbjct: 82 DKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 140
Query: 208 PLWDKYIEY--------EYMQ-QEWSRVAMIYTRILENP---IQQLDRYFSSFKE 250
+W YI + Y + Q + V +Y R NP I+QL R ++ ++E
Sbjct: 141 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 195
Score = 79 (32.9 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 63/310 (20%), Positives = 119/310 (38%)
Query: 327 AKEFDSKIIGFE-TAIRRPYFHVKPLSVTELENWHNYLDFIE----RDGDFNKVVK---- 377
AKE+++ + G + A P + P +++ W Y+ + + R D + K
Sbjct: 220 AKEYETVMKGLDRNAPSVPPQNT-PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 278
Query: 378 LYERCLIACANYPEYWIRYVLCMEAS-------GSM-------DLAHNALARATHVFVKR 423
YE+CL+ ++P+ W +E S G M D A N RA +K+
Sbjct: 279 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 338
Query: 424 LPEIHLFAARFKEQNGDIDGARAAYQ--LVHTETSPGLLEAIIKHANMERRLGNLEDAFS 481
++ A ++E + + Y L + P L+ I++ RR ++
Sbjct: 339 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV--YIQYMKFARRAEGIKSGRM 396
Query: 482 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541
++++A +E ++T +Y + + S++ A +I L + E +
Sbjct: 397 IFKKA------REDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---DIPEYV 447
Query: 542 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIK 601
+ + S + + L ++ L S S P + E+ FL F GD I
Sbjct: 448 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG-----EIWARFLAFESNIGDLASIL 502
Query: 602 KAEDRHARLF 611
K E R F
Sbjct: 503 KVEKRRFTAF 512
Score = 37 (18.1 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 957 ASILRVSKSQSTSF 970
ASIL+V K + T+F
Sbjct: 499 ASILKVEKRRFTAF 512
>UNIPROTKB|Q12996 [details] [associations]
symbol:CSTF3 "Cleavage stimulation factor subunit 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0006379 "mRNA
cleavage" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843 SMART:SM00386
GO:GO:0005654 EMBL:CH471064 Reactome:REACT_1675 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006379
GO:GO:0006369 Reactome:REACT_78 EMBL:U15782 EMBL:AK290836
EMBL:AC131263 EMBL:AL121926 EMBL:BC009792 EMBL:BC010533
EMBL:BC059948 EMBL:BC108319 EMBL:BM014288 IPI:IPI00015195
IPI:IPI00382661 IPI:IPI00651748 PIR:S50852 RefSeq:NP_001028677.1
RefSeq:NP_001028678.1 RefSeq:NP_001317.1 UniGene:Hs.44402
ProteinModelPortal:Q12996 SMR:Q12996 DIP:DIP-48674N IntAct:Q12996
STRING:Q12996 PhosphoSite:Q12996 DMDM:71153231 PaxDb:Q12996
PeptideAtlas:Q12996 PRIDE:Q12996 DNASU:1479 Ensembl:ENST00000323959
Ensembl:ENST00000431742 Ensembl:ENST00000438862 GeneID:1479
KEGG:hsa:1479 UCSC:uc001muh.3 CTD:1479 GeneCards:GC11M033106
H-InvDB:HIX0021822 HGNC:HGNC:2485 HPA:HPA039743 HPA:HPA040168
MIM:600367 neXtProt:NX_Q12996 PharmGKB:PA26987 eggNOG:COG5107
HOGENOM:HOG000231786 HOVERGEN:HBG053813 InParanoid:Q12996 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF PhylomeDB:Q12996 GenomeRNAi:1479
NextBio:6077 PMAP-CutDB:Q12996 ArrayExpress:Q12996 Bgee:Q12996
CleanEx:HS_CSTF3 Genevestigator:Q12996 GermOnline:ENSG00000176102
Uniprot:Q12996
Length = 717
Score = 176 (67.0 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 47/175 (26%), Positives = 87/175 (49%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N D AW+ L+ E + D K R+ Y+ +A+FP +WK Y + E + +
Sbjct: 25 LEENPYDLDAWSILIREAQNQPID---KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY 81
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-P---ETIRRLFERGLAYVGTDYLSF 207
DKV ++++R + V + +D+W Y + T G P E + + ++ L +G + +S+
Sbjct: 82 DKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 140
Query: 208 PLWDKYIEY--------EYMQ-QEWSRVAMIYTRILENP---IQQLDRYFSSFKE 250
+W YI + Y + Q + V +Y R NP I+QL R ++ ++E
Sbjct: 141 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 195
Score = 79 (32.9 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 63/310 (20%), Positives = 119/310 (38%)
Query: 327 AKEFDSKIIGFE-TAIRRPYFHVKPLSVTELENWHNYLDFIE----RDGDFNKVVK---- 377
AKE+++ + G + A P + P +++ W Y+ + + R D + K
Sbjct: 220 AKEYETVMKGLDRNAPSVPPQNT-PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 278
Query: 378 LYERCLIACANYPEYWIRYVLCMEAS-------GSM-------DLAHNALARATHVFVKR 423
YE+CL+ ++P+ W +E S G M D A N RA +K+
Sbjct: 279 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 338
Query: 424 LPEIHLFAARFKEQNGDIDGARAAYQ--LVHTETSPGLLEAIIKHANMERRLGNLEDAFS 481
++ A ++E + + Y L + P L+ I++ RR ++
Sbjct: 339 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV--YIQYMKFARRAEGIKSGRM 396
Query: 482 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541
++++A +E ++T +Y + + S++ A +I L + E +
Sbjct: 397 IFKKA------REDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---DIPEYV 447
Query: 542 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIK 601
+ + S + + L ++ L S S P + E+ FL F GD I
Sbjct: 448 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG-----EIWARFLAFESNIGDLASIL 502
Query: 602 KAEDRHARLF 611
K E R F
Sbjct: 503 KVEKRRFTAF 512
Score = 37 (18.1 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 957 ASILRVSKSQSTSF 970
ASIL+V K + T+F
Sbjct: 499 ASILKVEKRRFTAF 512
>UNIPROTKB|Q5F4A0 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
Pfam:PF05843 SMART:SM00386 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF GeneTree:ENSGT00390000006758
EMBL:AADN02065603 EMBL:AJ851400 IPI:IPI00592390
RefSeq:NP_001012586.1 UniGene:Gga.22714 SMR:Q5F4A0 STRING:Q5F4A0
Ensembl:ENSGALT00000019104 GeneID:421595 KEGG:gga:421595
InParanoid:Q5F4A0 NextBio:20824338 Uniprot:Q5F4A0
Length = 718
Score = 176 (67.0 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 47/175 (26%), Positives = 87/175 (49%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N D AW+ L+ E + D K R+ Y+ +A+FP +WK Y + E + +
Sbjct: 26 LEENPYDLDAWSILIREAQNQPID---KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY 82
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-P---ETIRRLFERGLAYVGTDYLSF 207
DKV ++++R + V + +D+W Y + T G P E + + ++ L +G + +S+
Sbjct: 83 DKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 141
Query: 208 PLWDKYIEY--------EYMQ-QEWSRVAMIYTRILENP---IQQLDRYFSSFKE 250
+W YI + Y + Q + V +Y R NP I+QL R ++ ++E
Sbjct: 142 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 196
Score = 79 (32.9 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 63/310 (20%), Positives = 119/310 (38%)
Query: 327 AKEFDSKIIGFE-TAIRRPYFHVKPLSVTELENWHNYLDFIE----RDGDFNKVVK---- 377
AKE+++ + G + A P + P +++ W Y+ + + R D + K
Sbjct: 221 AKEYETVMKGLDRNAPSVPPQNT-PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 279
Query: 378 LYERCLIACANYPEYWIRYVLCMEAS-------GSM-------DLAHNALARATHVFVKR 423
YE+CL+ ++P+ W +E S G M D A N RA +K+
Sbjct: 280 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 339
Query: 424 LPEIHLFAARFKEQNGDIDGARAAYQ--LVHTETSPGLLEAIIKHANMERRLGNLEDAFS 481
++ A ++E + + Y L + P L+ I++ RR ++
Sbjct: 340 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV--YIQYMKFARRAEGIKSGRM 397
Query: 482 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541
++++A +E ++T +Y + + S++ A +I L + E +
Sbjct: 398 IFKKA------REDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG---DIPEYV 448
Query: 542 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIK 601
+ + S + + L ++ L S S P + E+ FL F GD I
Sbjct: 449 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG-----EIWARFLAFESNIGDLASIL 503
Query: 602 KAEDRHARLF 611
K E R F
Sbjct: 504 KVEKRRFTAF 513
Score = 37 (18.1 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 957 ASILRVSKSQSTSF 970
ASIL+V K + T+F
Sbjct: 500 ASILKVEKRRFTAF 513
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 195 (73.7 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 121/512 (23%), Positives = 217/512 (42%)
Query: 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV 157
+ W + E +Q + + R V++ + + W KYA+ E + ++ V
Sbjct: 91 NIQVWVKYAQWEE--SQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNV 148
Query: 158 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 217
++RAV + +W Y I G+ R++FER + + D W +I++E
Sbjct: 149 WDRAVTLLPRVDQLWYKY-IHMEEILGNIAGARQIFERWMDW-SPDQQG---WLSFIKFE 203
Query: 218 YMQQEWSRVAMIYTR-ILENP-IQQLDRYFSSFK----EFAASRPLSELRTXXXXXXXXX 271
E R IY R +L +P + RY + F+ E A R + E R
Sbjct: 204 LRYNEIERARTIYERFVLCHPKVSAYIRY-AKFEMKGGEVARCRSVYE-RATEKLADDEE 261
Query: 272 XXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYIAVREEMYKKAKEF 330
+ E + E E + + G AE+L K++A E+ Y +
Sbjct: 262 AEILFVAFAEFEERCKEVERARFIYKFALDHIPKG--RAEDLYRKFVAF-EKQYGDKEGI 318
Query: 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL--IACAN 388
+ I+G R Y S + ++W +Y+ E G+ +++ ++YER + + A
Sbjct: 319 EDAIVGKR---RFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAE 375
Query: 389 YPEYWIRYV-LCMEASGSMDLAHNALARATHVF---VKRLP-------EIHLFAARFKEQ 437
YW RY+ L + + ++ + R V+ +K +P +I L AA+F+ +
Sbjct: 376 EKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIR 435
Query: 438 NGDIDGARAAYQLVHTETSPGLLEAIIK-HANMERRLGNLEDAFSLYEQAIAIEKGKEHS 496
++ GAR Q++ + I K + +E +LGN++ LYE+ + E E+
Sbjct: 436 QLNLTGAR---QILGNAIGKAPKDKIFKKYIEIELQLGNMDRCRKLYERYL--EWSPENC 490
Query: 497 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP--LLEALIHFESIQSSPKQI 554
YA+ R LV E+AR I ++ L P L +A I FE + ++
Sbjct: 491 YAWSK-YAELER--SLVE--TERARAIFELAISQPALDMPELLWKAYIDFEISEGELERT 545
Query: 555 DFL-EQLVDK---FLMSNSDSPSTANAAEREE 582
L E+L+D+ + + S + A+AAE EE
Sbjct: 546 RALYERLLDRTKHYKVWVSFAKFEASAAELEE 577
Score = 128 (50.1 bits), Expect = 0.00028, P = 0.00028
Identities = 42/159 (26%), Positives = 74/159 (46%)
Query: 97 SDFS-AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 155
S FS A LL ++ Q N+ R++ + + P +KKY + E ++G+MD+
Sbjct: 418 SKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDK-IFKKYIEIELQLGNMDRCR 476
Query: 156 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 215
++YER ++ + W Y + + E R +FE ++ D LW YI+
Sbjct: 477 KLYERYLEWSPENCYAWSKYAELE-RSLVETERARAIFELAISQPALDMPEL-LWKAYID 534
Query: 216 YEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAAS 254
+E + E R +Y R+L+ + + SF +F AS
Sbjct: 535 FEISEGELERTRALYERLLDRTKHY--KVWVSFAKFEAS 571
>UNIPROTKB|E5RJU8 [details] [associations]
symbol:G3BP1 "Ras GTPase-activating protein-binding protein
1" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30292 ChiTaRS:G3BP1
EMBL:AC091982 IPI:IPI00973731 ProteinModelPortal:E5RJU8 SMR:E5RJU8
Ensembl:ENST00000522761 UCSC:uc010jhy.1 ArrayExpress:E5RJU8
Bgee:E5RJU8 Uniprot:E5RJU8
Length = 153
Score = 167 (63.8 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 43/120 (35%), Positives = 65/120 (54%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD++H+FY SS + +D G ++ +IH V+S NF
Sbjct: 11 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ-EKGYFVLNDIF 835
T +I+ +++ + N GV+V V G + RR F+QTF LAP+ F+ +F
Sbjct: 71 TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEVHLALFLAQSLF 129
>UNIPROTKB|E5RH42 [details] [associations]
symbol:G3BP1 "Ras GTPase-activating protein-binding protein
1" species:9606 "Homo sapiens" [GO:0006810 "transport"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30292
ChiTaRS:G3BP1 EMBL:AC091982 IPI:IPI00979451
ProteinModelPortal:E5RH42 SMR:E5RH42 Ensembl:ENST00000520578
ArrayExpress:E5RH42 Bgee:E5RH42 Uniprot:E5RH42
Length = 117
Score = 165 (63.1 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 41/108 (37%), Positives = 61/108 (56%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD++H+FY SS + +D G ++ +IH V+S NF
Sbjct: 11 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824
T +I+ +++ + N GV+V V G + RR F+QTF LAP+
Sbjct: 71 TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPE 117
>UNIPROTKB|Q5HYE9 [details] [associations]
symbol:DKFZp313K0921 "Putative uncharacterized protein
DKFZp313K0921" species:9606 "Homo sapiens" [GO:0005622
"intracellular" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 CTD:10146 RefSeq:NP_005745.1
RefSeq:NP_938405.1 UniGene:Hs.587054 DNASU:10146 GeneID:10146
KEGG:hsa:10146 HGNC:HGNC:30292 PharmGKB:PA162389105
GenomeRNAi:10146 NextBio:38391 HOGENOM:HOG000138029 EMBL:AC091982
EMBL:AK300098 EMBL:BX647869 IPI:IPI00982147 SMR:Q5HYE9
STRING:Q5HYE9 Ensembl:ENST00000520177 Ensembl:ENST00000522367
HOVERGEN:HBG055943 Uniprot:Q5HYE9
Length = 122
Score = 165 (63.1 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 41/108 (37%), Positives = 61/108 (56%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD++H+FY SS + +D G ++ +IH V+S NF
Sbjct: 11 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824
T +I+ +++ + N GV+V V G + RR F+QTF LAP+
Sbjct: 71 TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPE 117
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 151 (58.2 bits), Expect = 6.8e-11, Sum P(4) = 6.8e-11
Identities = 45/154 (29%), Positives = 75/154 (48%)
Query: 117 IVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS----MDKVVEVYERAVQGVTYSVDIW 172
+VK+RR FPL W + E ++ S +KV E++ERAV+ +IW
Sbjct: 2 LVKLRRARQKMSELFPLTEEIWLDWLKDEIKMASEVSEREKVYELFERAVKDYICP-EIW 60
Query: 173 LHYCIFAINTYGDP---ETIRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQQEWSRVAM 228
L Y ++I G E +R +FER L VG LW+ Y E+E E +++
Sbjct: 61 LEYAQYSIGGIGQEGGIEKVRSIFERALTAVGLHVTKGTALWEAYREFENAILETAQLER 120
Query: 229 IYT---RILENPIQQLDRYFSSFKEFAASRPLSE 259
I+T R L P+ ++ ++ ++E++ P+ E
Sbjct: 121 IHTLFRRQLGIPLLDMEASYAEYEEWSED-PIPE 153
Score = 73 (30.8 bits), Expect = 6.8e-11, Sum P(4) = 6.8e-11
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 324 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERC 382
YKKA + K +E A+ P +K + T +L + Y+DF + GD ++ +YER
Sbjct: 159 YKKALQQLEKCKPYEEALV-P---LKLGAETPKLAEYQAYIDFEMKAGDPARIQLIYERA 214
Query: 383 LIACANYPEYWIRY 396
L P+ W RY
Sbjct: 215 LAENCLVPDLWARY 228
Score = 64 (27.6 bits), Expect = 6.8e-11, Sum P(4) = 6.8e-11
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 1035 SVYVRNLPSTVTAFEIE--EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+V+V NL +T E++ E F++ G + N+ G CY VEF+D A
Sbjct: 589 TVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCY--VEFKDEKSALQA 646
Query: 1093 IQASPIQLAGRQVYI 1107
+ + GR +++
Sbjct: 647 LGMDRKVVEGRPMFV 661
Score = 53 (23.7 bits), Expect = 6.4e-09, Sum P(4) = 6.4e-09
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 359 WHNYLDFIER-DGDFNKVVKLYERCLIACANYPEYWIRYVLCME 401
W YL +ER GD K R + ++YPE+ +L +E
Sbjct: 402 WIQYLLAMERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTLE 445
Score = 52 (23.4 bits), Expect = 1.0e-09, Sum P(4) = 1.0e-09
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQ 1090
E +++ LP + T E+E+ + G +K D V NR G+ Y VE+E+ +
Sbjct: 683 EKHKLFISGLPFSCTKEELEDICKAHGNVK-DIRLVTNRAGKPKGLAY--VEYENEAQAS 739
Query: 1091 NAI 1093
A+
Sbjct: 740 QAV 742
Score = 49 (22.3 bits), Expect = 1.6e-08, Sum P(4) = 1.6e-08
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 356 LENWHNYLDFIERDGDFNK-VVKLYERCLIACANYPEY 392
+E W YLD++ R DF + K E A A EY
Sbjct: 307 VEIWQAYLDYLRRRVDFTQDSSKELEELRSAFARAVEY 344
Score = 42 (19.8 bits), Expect = 6.8e-11, Sum P(4) = 6.8e-11
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 602 KAEDRHARLFLPHRSTSELRKRHAEDFLASERAK 635
KA ++ A L +E RK+ + AS++AK
Sbjct: 488 KAAEKEAALARQEEEKAEQRKQSRAEKKASKKAK 521
>RGD|1311646 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T-cells 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
RGD:1311646 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 EMBL:CH473973
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
CTD:9733 OMA:SQAVMKM OrthoDB:EOG4RXXZG IPI:IPI00371231
RefSeq:NP_001100626.1 UniGene:Rn.101480 Ensembl:ENSRNOT00000000891
GeneID:304582 KEGG:rno:304582 UCSC:RGD:1311646 NextBio:653335
Uniprot:D3ZAS8
Length = 960
Score = 154 (59.3 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 90/421 (21%), Positives = 161/421 (38%)
Query: 2 DPNAVMQQAPGVGAPGSGDNV--ATSENEAMGSSQAAGYNSMNGNVVNEA-GNATSTENG 58
+P Q P A G D A + + S++ A V E + E
Sbjct: 11 EPEVEPQARPE--AEGEEDEAKPAGVGRKVLSSAETAKAKGPEREVHQEGVSESDGDEED 68
Query: 59 TSLGIESGAAAGQEL--VDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDN 116
++ + ++AG++ D E +RL + N D++ L+ + N
Sbjct: 69 AAMASSAESSAGEDEWEYDEEEEKNQLEIERLEEQLSINGYDYNCHVGLIRLLRLEGELN 128
Query: 117 IVKIRRVYDAFLAEFPLCYGYWKKYADHEAR--VGSMDK--VVEVYERAVQGVTYSVDIW 172
K+R FPL W ++ E V +D+ V E++ERAV+ +IW
Sbjct: 129 --KVRMARQKMSEIFPLTEELWLEWLHDEISMAVDGLDRERVYELFERAVKDYICP-NIW 185
Query: 173 LHYCIFAINTYGDP---ETIRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQQEWSRVAM 228
L Y +++ G E +R +FER L+ VG +W+ Y E+E E +R+
Sbjct: 186 LEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLAIWEAYREFESAIVEAARLER 245
Query: 229 IYT---RILENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXXXXXXXXXXPSETG---A 282
+++ R L P+ +++ F+ ++E++ P+ E P E A
Sbjct: 246 VHSLFRRQLAIPLYEMEATFAEYEEWS-EEPIPESVLQSYQKALGQLEKYKPYEEALLQA 304
Query: 283 EV-KANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAI 341
E + E + D + P L L + V + + ++ D ++ + +
Sbjct: 305 EAPRLAEYQAYIDFEMKVGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLVL 364
Query: 342 RRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCL----IACANYPEYWIRY 396
V+ T + W YL +ER G D + +E L I +Y E W Y
Sbjct: 365 SVHSRAVRNCPWT-VALWSRYLLAMERHGLDHQMISATFENALSAGFIQATDYVEIWQVY 423
Query: 397 V 397
+
Sbjct: 424 L 424
Score = 127 (49.8 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 40/169 (23%), Positives = 86/169 (50%)
Query: 91 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVG 149
+++A + + + A ++ K+ +I+ +++ L E L W +Y+ + + ++
Sbjct: 301 LLQAEAPRLAEYQAYIDFEMKVGDP--ARIQLIFERALVENCLVPDLWIRYSQYLDRQLK 358
Query: 150 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG-DPETIRRLFERGLA--YV-GTDYL 205
D V+ V+ RAV+ ++V +W Y + A+ +G D + I FE L+ ++ TDY+
Sbjct: 359 VKDLVLSVHSRAVRNCPWTVALWSRY-LLAMERHGLDHQMISATFENALSAGFIQATDYV 417
Query: 206 SFPLWDKYIEY-----EYMQ---QEWSRVAMIYTRILENPIQQLDRYFS 246
+W Y++Y ++ Q +E + ++TR LE Q+++ FS
Sbjct: 418 E--IWQVYLDYLRRRVDFRQDSSKELEELRSMFTRALEYLQQEVEERFS 464
Score = 79 (32.9 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 34/149 (22%), Positives = 63/149 (42%)
Query: 961 RVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFE 1020
R+ S ++ + + TK + + AP P+ Q+ S + MP+ +
Sbjct: 645 RMENSLASGVASAKEEETKLSGKCLTIDVAP-PSKQKEKAAS-------LKRDMPKVAHD 696
Query: 1021 AVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEE--FQNFGRIKPDGVFVRNRKDVVGVCY 1078
+ DS+ +V+V NLP ++ E++ F+ G + NR D G CY
Sbjct: 697 SSKDSV--------TVFVSNLPYSIEEPEVKLRPLFEACGEVVQIRPIFSNRGDFRGYCY 748
Query: 1079 AFVEFEDISGVQNAIQASPIQLAGRQVYI 1107
VEF++ Q A+ + GR +++
Sbjct: 749 --VEFKEEKSAQQALDLDRKNVEGRPMFV 775
Score = 57 (25.1 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARAT 417
W Y + GD K R + ++YPE+ +L ME + G+++ A+ + T
Sbjct: 510 WLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGTLEDWDLAIQK-T 568
Query: 418 HVFVKRLPEIHLFAARFKE 436
+ R+ E + AA KE
Sbjct: 569 ETRLARVNEQRMKAAE-KE 586
Score = 50 (22.7 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQ 1090
E +++ LP + T E+E + G +K D V NR G+ Y VE+E+ S
Sbjct: 797 EKHKLFISGLPFSCTKEELEGICKAHGTVK-DLRLVTNRAGKPKGLAY--VEYENESQAS 853
Query: 1091 NAI 1093
A+
Sbjct: 854 QAV 856
Score = 47 (21.6 bits), Expect = 9.2e-10, Sum P(3) = 9.2e-10
Identities = 25/107 (23%), Positives = 37/107 (34%)
Query: 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA--RFKEQNGDIDGA 444
A Y W+ Y A G AL RA PE H+ + G ++
Sbjct: 504 AKYANMWLEYYNLERAHGDTQHCRKALHRAVQC-TSDYPE-HVCEVLLTMERTEGTLEDW 561
Query: 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491
A Q T + + E +K A E L E+ + + + EK
Sbjct: 562 DLAIQKTETRLAR-VNEQRMKAAEKEAALVQQEEEKAEQRKKVRAEK 607
>UNIPROTKB|E9PLP8 [details] [associations]
symbol:CSTF3 "Cleavage stimulation factor subunit 3"
species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 EMBL:AC131263 HGNC:HGNC:2485
IPI:IPI00982702 ProteinModelPortal:E9PLP8 SMR:E9PLP8
Ensembl:ENST00000524827 ArrayExpress:E9PLP8 Bgee:E9PLP8
Uniprot:E9PLP8
Length = 185
Score = 163 (62.4 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 35/129 (27%), Positives = 67/129 (51%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N D AW+ L+ E + D K R+ Y+ +A+FP +WK Y + E + +
Sbjct: 57 LEENPYDLDAWSILIREAQNQPID---KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY 113
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-P---ETIRRLFERGLAYVGTDYLSF 207
DKV ++++R + V + +D+W Y + T G P E + + ++ L +G + +S+
Sbjct: 114 DKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 172
Query: 208 PLWDKYIEY 216
+W YI +
Sbjct: 173 QIWVDYINF 181
>UNIPROTKB|E1BGY7 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 Gene3D:1.25.40.10 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:DAAA02041256 EMBL:DAAA02041257
IPI:IPI00709818 Ensembl:ENSBTAT00000011369 Uniprot:E1BGY7
Length = 718
Score = 176 (67.0 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 47/175 (26%), Positives = 87/175 (49%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N D AW+ L+ E + D K R+ Y+ +A+FP +WK Y + E + +
Sbjct: 25 LEENPYDLDAWSILIREAQNQPID---KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY 81
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-P---ETIRRLFERGLAYVGTDYLSF 207
DKV ++++R + V + +D+W Y + T G P E + + ++ L +G + +S+
Sbjct: 82 DKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 140
Query: 208 PLWDKYIEY--------EYMQ-QEWSRVAMIYTRILENP---IQQLDRYFSSFKE 250
+W YI + Y + Q + V +Y R NP I+QL R ++ ++E
Sbjct: 141 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 195
Score = 67 (28.6 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 24/103 (23%), Positives = 46/103 (44%)
Query: 327 AKEFDSKIIGFE-TAIRRPYFHVKPLSVTELENWHNYLDFIE----RDGDFNKVVK---- 377
AKE+++ + G + A P + P +++ W Y+ + + R D + K
Sbjct: 220 AKEYETVMKGLDRNAPSVPPQNT-PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 278
Query: 378 LYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 420
YE+CL+ ++P+ W +E S + LA ++ H F
Sbjct: 279 AYEQCLLVLGHHPDIWYEAAQYLEQSSKL-LAEKGVS--VHFF 318
Score = 46 (21.3 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 362 YLDFIERDGDFNKVVKLYERCLIACANYPE----YWIRYVLCMEASGSMDLA 409
Y+D++ + N L+ER L + + PE W R+ L E S DLA
Sbjct: 451 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF-LAFE-SNIGDLA 500
Score = 37 (18.1 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 957 ASILRVSKSQSTSF 970
ASIL+V K + T+F
Sbjct: 500 ASILKVEKRRFTAF 513
>UNIPROTKB|D6RGJ4 [details] [associations]
symbol:G3BP2 "Ras GTPase-activating protein-binding protein
2" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30291 EMBL:AC104828
HOGENOM:HOG000138029 IPI:IPI00965049 ProteinModelPortal:D6RGJ4
SMR:D6RGJ4 Ensembl:ENST00000509100 ArrayExpress:D6RGJ4 Bgee:D6RGJ4
Uniprot:D6RGJ4
Length = 125
Score = 158 (60.7 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 41/108 (37%), Positives = 61/108 (56%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824
+ +I+ +++ + + GV+V V G + RKF+QTF LAP+
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAPE 117
>WB|WBGene00006307 [details] [associations]
symbol:suf-1 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0009792 GO:GO:0006397 GO:GO:0000003 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:Z68315 PIR:T21484
RefSeq:NP_495825.1 ProteinModelPortal:Q19866 SMR:Q19866
STRING:Q19866 EnsemblMetazoa:F28C6.6.1 EnsemblMetazoa:F28C6.6.2
GeneID:174380 KEGG:cel:CELE_F28C6.6 UCSC:F28C6.6.1 CTD:174380
WormBase:F28C6.6 InParanoid:Q19866 NextBio:883790
ArrayExpress:Q19866 Uniprot:Q19866
Length = 735
Score = 161 (61.7 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 42/170 (24%), Positives = 80/170 (47%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N D AW LL E + D + R Y++ + +FP YWK Y +HE R +
Sbjct: 13 IETNPFDVDAWNLLLREHQSRPID---QERDFYESLVKQFPNSGRYWKAYIEHELRSKNF 69
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIR----RLFERGLAYVGTDYLSF 207
+ V +++ R + V ++D+W Y + T G + R + ++ L VG D ++
Sbjct: 70 ENVEKLFSRCLVSVL-NIDLWKCYIHYVFETKGQRDQYREEMAKAYDFALEKVGMDVQAY 128
Query: 208 PLWDKYIEY--------EYMQ-QEWSRVAMIYTRILENPIQQLDRYFSSF 248
++ +YI + +Y + Q + V IY + L P+ L+ ++ +
Sbjct: 129 SIFTEYIAFLKKVPAVGQYAENQRITAVRKIYQKALATPMHNLELIWNDY 178
Score = 78 (32.5 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 29/107 (27%), Positives = 47/107 (43%)
Query: 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL-SVTE---LENWHNYLDF---- 365
EK IA R + Y+ A+ + + + R V P + TE +E W N + +
Sbjct: 191 EKLIAERGKEYQNARRVEKDLQQMTRGLNRQAVSVPPKGTATEFKQVELWKNLIAWEKTN 250
Query: 366 ---IERDGDF-NKVVKLYERCLIACANYPEYWIRYVLCM-EASGSMD 407
E G +VV YE+ L+ YP+ W + + EAS ++D
Sbjct: 251 PLQTEEYGQHARRVVYTYEQSLLCLGYYPDIWYEAAMFLQEASHTLD 297
Score = 44 (20.5 bits), Expect = 9.9e-07, Sum P(3) = 9.9e-07
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 359 WHNYLDFIERDGDFNKVVKLYER 381
W +LDF GD ++K+ +R
Sbjct: 473 WDRFLDFESCVGDLASILKVEKR 495
Score = 43 (20.2 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 362 YLDFIERDGDFNKVVKLYERCL 383
Y DF E F V +Y+R L
Sbjct: 334 YADFQEEHKQFEAVKNIYDRLL 355
Score = 40 (19.1 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 957 ASILRVSKSQSTSFVATQPSFTKTAS 982
ASIL+V K + T++ Q T S
Sbjct: 487 ASILKVEKRRKTAYEEAQKDQTMNHS 512
Score = 40 (19.1 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 442 DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478
D + YQL+ T + P + ++++R+ G+ +D
Sbjct: 670 DVKKDMYQLLATTSDPSAVVRSSALSDLKRKRGDSDD 706
>UNIPROTKB|D6RBW8 [details] [associations]
symbol:G3BP2 "Ras GTPase-activating protein-binding protein
2" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30291 EMBL:AC104828
HOGENOM:HOG000138029 IPI:IPI00966981 ProteinModelPortal:D6RBW8
SMR:D6RBW8 Ensembl:ENST00000511146 ArrayExpress:D6RBW8 Bgee:D6RBW8
Uniprot:D6RBW8
Length = 116
Score = 156 (60.0 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 41/107 (38%), Positives = 60/107 (56%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAP 823
+ +I+ +++ + + GV+V V G + RKF+QTF LAP
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQTFVLAP 116
>UNIPROTKB|Q15020 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 EMBL:AB020880 GO:GO:0043231
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 EMBL:AF387506 EMBL:D63879 EMBL:AK290209
EMBL:BC032601 EMBL:BC041638 EMBL:BC093784 EMBL:BC103706
EMBL:BC111983 IPI:IPI00006025 IPI:IPI00383381 IPI:IPI01022779
RefSeq:NP_055521.1 UniGene:Hs.584842 PDB:2DO4 PDBsum:2DO4
ProteinModelPortal:Q15020 SMR:Q15020 IntAct:Q15020
MINT:MINT-2867335 STRING:Q15020 PhosphoSite:Q15020 DMDM:74762140
PaxDb:Q15020 PeptideAtlas:Q15020 PRIDE:Q15020
Ensembl:ENST00000228284 Ensembl:ENST00000546611
Ensembl:ENST00000546728 GeneID:9733 KEGG:hsa:9733 UCSC:uc001tmy.1
UCSC:uc001tnb.3 CTD:9733 GeneCards:GC12M108915 HGNC:HGNC:16860
HPA:HPA044322 MIM:175900 MIM:611684 neXtProt:NX_Q15020
Orphanet:79152 PharmGKB:PA34948 HOGENOM:HOG000063708
HOVERGEN:HBG053888 InParanoid:Q15020 OMA:SQAVMKM OrthoDB:EOG4RXXZG
PhylomeDB:Q15020 ChiTaRS:SART3 EvolutionaryTrace:Q15020
GenomeRNAi:9733 NextBio:36616 ArrayExpress:Q15020 Bgee:Q15020
CleanEx:HS_SART3 Genevestigator:Q15020 GermOnline:ENSG00000075856
Uniprot:Q15020
Length = 963
Score = 156 (60.0 bits), Expect = 7.2e-10, Sum P(3) = 7.2e-10
Identities = 93/425 (21%), Positives = 168/425 (39%)
Query: 2 DPNAVMQQAPGVGAPGSGDNV--ATSENEAMGSSQAAG-YNSMNGNVVNEAGNATSTENG 58
+P A + P A G D V A + + + + AA Y +M G ++ S +G
Sbjct: 11 EPEAESKAGPK--ADGEEDEVKAARTRRKVLSRAVAAATYKTM-GPAWDQQEEGVSESDG 67
Query: 59 TSLGIESGAAA--GQ-EL-VDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQ 114
+ S A + G+ E D E +RL + N D++ L+ +
Sbjct: 68 DEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIRLLR--LE 125
Query: 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS--MDK--VVEVYERAVQGVTYSVD 170
+ K+R FPL W ++ E + +D+ V +++E+AV+ +
Sbjct: 126 GELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDYICP-N 184
Query: 171 IWLHYCIFAINTYGDP---ETIRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQQEWSRV 226
IWL Y +++ G E +R +FER L+ VG LW+ Y E+E E +R+
Sbjct: 185 IWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVEAARL 244
Query: 227 AMIYT---RILENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXXXXXXXXXXPSETG-- 281
+++ R L P+ ++ F+ ++E++ P+ E P E
Sbjct: 245 EKVHSLFRRQLAIPLYDMEATFAEYEEWSED-PIPESVIQNYNKALQQLEKYKPYEEALL 303
Query: 282 -AEV-KANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDS--KIIGF 337
AE + E + D + P L L + V + + ++ D K+
Sbjct: 304 QAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDL 363
Query: 338 ETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKL-YERCL----IACANYPEY 392
++ P +V W YL +ER G ++V+ + +E+ L I +Y E
Sbjct: 364 VLSVHNRAIRNCPWTVAL---WSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEI 420
Query: 393 WIRYV 397
W Y+
Sbjct: 421 WQAYL 425
Score = 123 (48.4 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 38/169 (22%), Positives = 85/169 (50%)
Query: 91 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVG 149
+++A + + + A ++ K+ +I+ +++ L E L W +Y+ + + ++
Sbjct: 302 LLQAEAPRLAEYQAYIDFEMKIGDP--ARIQLIFERALVENCLVPDLWIRYSQYLDRQLK 359
Query: 150 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG-DPETIRRLFERGL--AYV-GTDYL 205
D V+ V+ RA++ ++V +W Y + A+ +G D + I FE+ L ++ TDY+
Sbjct: 360 VKDLVLSVHNRAIRNCPWTVALWSRY-LLAMERHGVDHQVISVTFEKALNAGFIQATDYV 418
Query: 206 SFPLWDKYIEY-----EYMQ---QEWSRVAMIYTRILENPIQQLDRYFS 246
+W Y++Y ++ Q +E + +TR LE Q+++ F+
Sbjct: 419 E--IWQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFN 465
Score = 66 (28.3 bits), Expect = 7.2e-10, Sum P(3) = 7.2e-10
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 1035 SVYVRNLPSTVTA--FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+V+V NLP ++ ++ F+ G + NR D G CY VEF++ A
Sbjct: 705 TVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCY--VEFKEEKSALQA 762
Query: 1093 IQASPIQLAGRQVYI 1107
++ + GR +++
Sbjct: 763 LEMDRKSVEGRPMFV 777
Score = 59 (25.8 bits), Expect = 7.2e-10, Sum P(3) = 7.2e-10
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARAT 417
W Y + GD K R + ++YPE+ +L ME + GS++ A+ + T
Sbjct: 511 WLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGSLEDWDIAVQK-T 569
Query: 418 HVFVKRLPEIHLFAARFKE 436
+ R+ E + AA KE
Sbjct: 570 ETRLARVNEQRMKAAE-KE 587
Score = 57 (25.1 bits), Expect = 5.8e-09, Sum P(3) = 5.8e-09
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQ 1090
E +++ LP + T E+EE + G +K D V NR G+ Y VE+E+ S
Sbjct: 799 EKHKLFISGLPFSCTKEELEEICKAHGTVK-DLRLVTNRAGKPKGLAY--VEYENESQAS 855
Query: 1091 NAI 1093
A+
Sbjct: 856 QAV 858
Score = 44 (20.5 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 23/94 (24%), Positives = 32/94 (34%)
Query: 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA--RFKEQNGDIDGA 444
A Y W+ Y A G AL RA PE H+ + G ++
Sbjct: 505 AKYANMWLEYYNLERAHGDTQHCRKALHRAVQC-TSDYPE-HVCEVLLTMERTEGSLEDW 562
Query: 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478
A Q T + + E +K A E L E+
Sbjct: 563 DIAVQKTETRLAR-VNEQRMKAAEKEAALVQQEE 595
>UNIPROTKB|E1BWJ0 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 OMA:SQAVMKM
EMBL:AADN02034959 EMBL:AADN02034960 EMBL:AADN02034961
EMBL:AADN02034962 EMBL:AADN02034963 IPI:IPI00823214
ProteinModelPortal:E1BWJ0 Ensembl:ENSGALT00000038892
ArrayExpress:E1BWJ0 Uniprot:E1BWJ0
Length = 731
Score = 160 (61.4 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 125/582 (21%), Positives = 233/582 (40%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
E RL + N+ D++ L++ + + +VK+RR FPL W +
Sbjct: 50 EIQRLEEQLSINAFDYNCHLDLIKLLRQ--EGELVKLRRARQKMSELFPLTEEIWLDWLK 107
Query: 144 HEARVGS----MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDP---ETIRRLFERG 196
E ++ S +KV E++ERAV+ +IWL Y ++I G E +R +FER
Sbjct: 108 DEIKMASEVSEREKVYELFERAVKDYICP-EIWLEYAQYSIGGIGQEGGIEKVRSIFERA 166
Query: 197 LAYVGTDYLS-FPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR 255
L VG LW+ Y E+E E ++V P+ QL+R + F+
Sbjct: 167 LTAVGLHVTKGTALWEAYREFENAILETAQV---------RPVCQLERIHTLFRR-QLGI 216
Query: 256 PLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315
PL ++ P T +K ++ +Q + KP L +L
Sbjct: 217 PLLDMEASYAEYEEWSEDPI-PETT---IKNYKKALQQ---LEKCKPYEEALDLLSQLGA 269
Query: 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 375
E Y+ +F+ K G I+ Y + + W Y +++R ++
Sbjct: 270 ETPKLAE-YQAYIDFEMKA-GDPARIQLIYERALAENCLVPDLWARYNQYLDRQLKVKEL 327
Query: 376 V-KLYERCLIACANYPEYWIRYVLCMEASGSMD--LAHNALARATHV-FVKRLPEIHLFA 431
V ++R + C WI+Y+L ME G +D + + +A + F++ + ++
Sbjct: 328 VLSAHDRAVRNCPWTVGLWIQYLLAMERHG-VDHCIISDMFEKALNAGFIQATDYVEIWQ 386
Query: 432 ARF----------KEQNGDIDGARAAYQLVHTETSPGLLEA-IIKHANMERRLGNLEDAF 480
A ++ + +++ R+A+ + E ++ + G+LE
Sbjct: 387 AYLDYLRRRVDFTQDSSKELEELRSAFARAVEYLKQEVEELQTCRYLGQQASHGDLEIGG 446
Query: 481 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKAR-QILVDSLDH--VQLSK-- 535
+ E A ++T P L A+Y ++ + + AR Q++ + H VQ +
Sbjct: 447 AA-EVVGACSFYLLGAET-PKL-AEYQAYIDFEMKAGDPARIQLIYEKALHRAVQCTSDY 503
Query: 536 P--LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGL 593
P + E L+ E I+ + + D Q + L ++ + + +LS E G
Sbjct: 504 PEHVCEVLLTLERIEGTLEDWDAAVQKTENRLARVNEQRAKLRR-KPSKLS----EGGGK 558
Query: 594 FGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAK 635
+ + AE + A L +E RK+ + AS++AK
Sbjct: 559 KKQTEKNRAAE-KEAALARQEEEKAEQRKQSRAEKKASKKAK 599
Score = 71 (30.1 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 27/97 (27%), Positives = 44/97 (45%)
Query: 1016 ESGFEAVDDSLGLDEGEVK---SVYVRNLPSTVTAFEIE--EEFQNFGRIKPDGVFVRNR 1070
E G E +D L E + K +V+V NL +T E++ E F++ G + N+
Sbjct: 616 EWGQEEEEDPLRQREHDSKDNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNK 675
Query: 1071 KDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107
G CY VEF+D A+ + GR +++
Sbjct: 676 GTFRGYCY--VEFKDEKSALQALGMDRKVVEGRPMFV 710
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 151 (58.2 bits), Expect = 7.6e-10, Sum P(3) = 7.6e-10
Identities = 78/369 (21%), Positives = 144/369 (39%)
Query: 49 AGNATSTENGTSLGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEE 108
+G+ E+ + ES A + D E +RL + N D++ L+
Sbjct: 63 SGSDGDEEDAMASSAESSAGEDEWEYDEEEEKNQLEIERLEEQLSINGYDYNCHVELIRL 122
Query: 109 TEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG--SMDK--VVEVYERAVQG 164
+ + ++R FPL W ++ E + +D+ V E++ERAV+
Sbjct: 123 LR--LEGELSRVRAARQKMSELFPLTEELWLEWLHDEISMAMDGLDREHVYELFERAVKD 180
Query: 165 VTYSVDIWLHYCIFAINTYGDP---ETIRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQ 220
+IWL Y +++ G E +R +FER L+ VG +W+ Y E+E
Sbjct: 181 YICP-NIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLAIWEAYREFESAI 239
Query: 221 QEWSRVAMIYT---RILENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXXXXXXXXXXP 277
E +R+ +++ R L P+ +++ F+ ++E++ P+ E P
Sbjct: 240 VEAARLEKVHSLFRRQLAIPLYEMEATFAEYEEWS-EEPMPESVLQSYQKALGQLEKYKP 298
Query: 278 SETG---AEV-KANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSK 333
E AE + E + D + P L L + V + + ++ D +
Sbjct: 299 YEEALLQAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQ 358
Query: 334 IIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCL----IACAN 388
+ + + V+ T + W YL +ER G D + +E L I +
Sbjct: 359 LKVKDLVLSVHSRAVRNCPWT-VALWSRYLLAMERHGLDHQTISATFENALSAGFIQATD 417
Query: 389 YPEYWIRYV 397
Y E W Y+
Sbjct: 418 YVEIWQVYL 426
Score = 134 (52.2 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 41/169 (24%), Positives = 87/169 (51%)
Query: 91 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVG 149
+++A + + + A ++ K+ +I+ +++ L E L W +Y+ + + ++
Sbjct: 303 LLQAEAPRLAEYQAYIDFEMKIGDP--ARIQLIFERALVENCLVPDLWIRYSQYLDRQLK 360
Query: 150 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG-DPETIRRLFERGLA--YV-GTDYL 205
D V+ V+ RAV+ ++V +W Y + A+ +G D +TI FE L+ ++ TDY+
Sbjct: 361 VKDLVLSVHSRAVRNCPWTVALWSRY-LLAMERHGLDHQTISATFENALSAGFIQATDYV 419
Query: 206 SFPLWDKYIEY-----EYMQ---QEWSRVAMIYTRILENPIQQLDRYFS 246
+W Y++Y ++ Q +E + ++TR LE Q+++ FS
Sbjct: 420 E--IWQVYLDYLRRRVDFRQDSSKELEELRSMFTRALEYLQQEVEERFS 466
Score = 73 (30.8 bits), Expect = 7.6e-10, Sum P(3) = 7.6e-10
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 1035 SVYVRNLPSTVTAFEIEEE--FQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+V+V NLP ++ E++ F+ G + NR D G CY VEF + Q A
Sbjct: 705 TVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCY--VEFGEEKSAQQA 762
Query: 1093 IQASPIQLAGRQVYI 1107
++ + GR +++
Sbjct: 763 LELDRKIVEGRPMFV 777
Score = 57 (25.1 bits), Expect = 7.6e-10, Sum P(3) = 7.6e-10
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARAT 417
W Y + GD K R + ++YPE+ +L ME + G+++ A+ + T
Sbjct: 512 WLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGTLEDWDLAIQK-T 570
Query: 418 HVFVKRLPEIHLFAARFKE 436
+ R+ E + AA KE
Sbjct: 571 ETRLARVNEQRMKAAE-KE 588
Score = 54 (24.1 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQ 1090
E +++ LP + T E+E+ + G +K D V NR G+ Y VE+E+ S
Sbjct: 799 EKHKLFISGLPFSCTKEELEDICKAHGTVK-DLRLVTNRAGKPKGLAY--VEYENESQAS 855
Query: 1091 NAI 1093
A+
Sbjct: 856 QAV 858
Score = 47 (21.6 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 25/107 (23%), Positives = 37/107 (34%)
Query: 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA--RFKEQNGDIDGA 444
A Y W+ Y A G AL RA PE H+ + G ++
Sbjct: 506 AKYANMWLEYYNLERAHGDTQHCRKALHRAVQC-TSDYPE-HVCEVLLTMERTEGTLEDW 563
Query: 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491
A Q T + + E +K A E L E+ + + + EK
Sbjct: 564 DLAIQKTETRLAR-VNEQRMKAAEKEAALVQQEEEKAEQRKKVRAEK 609
Score = 39 (18.8 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 285 KANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK 328
+ NE+ ++ A E+ + V +AE+ +K A ++ + KK K
Sbjct: 576 RVNEQRMK--AAEKEAALVQQEEEKAEQRKKVRAEKKALKKKKK 617
>TAIR|locus:2135892 [details] [associations]
symbol:EMB140 "EMBRYO DEFECTIVE 140" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SMART:SM00386 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR008669 Pfam:PF05391
OMA:SQAVMKM IPI:IPI00526863 RefSeq:NP_194158.3 UniGene:At.32361
ProteinModelPortal:F4JQ75 SMR:F4JQ75 PRIDE:F4JQ75
EnsemblPlants:AT4G24270.2 GeneID:828529 KEGG:ath:AT4G24270
PhylomeDB:F4JQ75 Uniprot:F4JQ75
Length = 817
Score = 160 (61.4 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 80/370 (21%), Positives = 141/370 (38%)
Query: 54 STENGTSLGIESGAAAGQELVDGSVPAMSGEED-RLWNIVKANSSDFSAWTALLEETEKL 112
S EN S +G D A S ++ L + + AN ++ A+ ++ K
Sbjct: 20 SAENPARADPPSSDDSGDSDSDSEDEAESNQQIVTLESELSANPYNYDAYVQYIKLLRKT 79
Query: 113 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV---YERAVQGVTYSV 169
A N+ K+R+ +A A FPL W ++A EA + + + V E+ YER + SV
Sbjct: 80 A--NLEKLRQAREAMSAIFPLSPSLWLEWARDEASLAASENVPEIVMLYERGLSDYQ-SV 136
Query: 170 DIWLHYCIFAI----NTYGDPET----IRRLFERGLAYVGTDYLSFP-LWDKYIEYEYMQ 220
+W Y F + + G P +R LFER + G +W+ Y E+E
Sbjct: 137 SLWCDYLSFMLEFDPSVRGYPSEGISKMRSLFERAIPAAGFHVTEGNRIWEGYREFEQ-- 194
Query: 221 QEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXXXXXXXXXXPSET 280
+A I +E +Q+ R S F S PL L + +
Sbjct: 195 ---GVLATIDEADIEERNKQIQRIRSIFHRHL-SVPLENLSSTLIAYKTWELEQGIDLDI 250
Query: 281 GAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDS--KIIGFE 338
G++ + A ++ + S E + K E +++ + K G
Sbjct: 251 GSDDLSKVSHQVAVANKKAQQMYSERAHLEENISKQDLSDTEKFQEFMNYIKFEKTSGDP 310
Query: 339 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVK-LYERCLIACANYPEYWIRYV 397
T ++ Y + W +Y ++++ K + Y R +C + W RY+
Sbjct: 311 TRVQAIYERAVAEYPVSSDLWIDYTVYLDKTLKVGKAITHAYSRATRSCPWTGDLWARYL 370
Query: 398 LCMEASGSMD 407
L +E + +
Sbjct: 371 LALERGSASE 380
Score = 111 (44.1 bits), Expect = 0.00075, Sum P(3) = 0.00075
Identities = 35/151 (23%), Positives = 68/151 (45%)
Query: 90 NIVKANSSDFSAWTALLE--ETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYA---DH 144
NI K + SD + + + EK + D +++ +Y+ +AE+P+ W Y D
Sbjct: 282 NISKQDLSDTEKFQEFMNYIKFEKTSGDP-TRVQAIYERAVAEYPVSSDLWIDYTVYLDK 340
Query: 145 EARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204
+VG + Y RA + ++ D+W Y + + I +FE+ L
Sbjct: 341 TLKVGKA--ITHAYSRATRSCPWTGDLWARYLLALERGSASEKEIYDVFEKSLQ------ 392
Query: 205 LSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 235
+F +++Y++ + + R M+ TR+LE
Sbjct: 393 CTFSSFEEYLDLYLTRVDGLRRRMLSTRMLE 423
Score = 69 (29.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 27/113 (23%), Positives = 55/113 (48%)
Query: 424 LPEIHLFAARFKEQNG-DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 482
L +H + A + G D+ GAR + + S G+L A + +ME LG++++A S+
Sbjct: 451 LLHLHTYWANLELNIGKDLAGARGVWDSF-LKKSGGMLAAWHAYIDMEVHLGHIKEARSI 509
Query: 483 YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535
Y + + S+ + + ++ R H + + A Q ++ L+ +QL +
Sbjct: 510 YRRCYTRKFDGTGSEDICKGWLRFERE-HGDLEHFDLAVQKVMPRLEELQLMR 561
Score = 40 (19.1 bits), Expect = 0.00075, Sum P(3) = 0.00075
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 18 SGDNVATSENEAMGSSQAAGYNS-MNGNVVN 47
SGD+ + SE+EA + Q S ++ N N
Sbjct: 35 SGDSDSDSEDEAESNQQIVTLESELSANPYN 65
Score = 37 (18.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV 1065
E E+ V+ ++L T ++FE E+ + + DG+
Sbjct: 380 EKEIYDVFEKSLQCTFSSFE---EYLDLYLTRVDGL 412
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 153 (58.9 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 40/137 (29%), Positives = 67/137 (48%)
Query: 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 175
NI R+V++ ++ P W Y + E R +DK +YE+A+ V V W+ Y
Sbjct: 163 NIAGCRQVFERWMEWEPEEQA-WHSYINFELRYKEVDKARSIYEKALVMVHPEVKNWIKY 221
Query: 176 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 235
F +G R++FER + + G + +S L+ + +E Q+E+ RV +IY L+
Sbjct: 222 AHFE-EKHGYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYALD 280
Query: 236 N-PIQQLDRYFSSFKEF 251
P QQ F ++ F
Sbjct: 281 RIPKQQAQELFKNYTVF 297
Score = 116 (45.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 39/170 (22%), Positives = 74/170 (43%)
Query: 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALA 414
E + WH+Y++F R + +K +YE+ L+ + WI+Y E G +
Sbjct: 180 EEQAWHSYINFELRYKEVDKARSIYEKALVMVHPEVKNWIKYAHFEEKHGYVARGRKVFE 239
Query: 415 RATHVFVKRLPEIHLFAA--RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM-ER 471
RA F + +L+ A RF+E+ + + R Y+ + + K+ + E+
Sbjct: 240 RAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKNYTVFEK 299
Query: 472 RLGN---LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 518
R G+ +ED + ++ E E + P Y + +L LV +A+
Sbjct: 300 RFGDRRGIEDVI-VSKRRFQYE---EEVKANPHNYDAWFDYLRLVESDAD 345
Score = 75 (31.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/145 (20%), Positives = 61/145 (42%)
Query: 106 LEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 165
+ + E+L D +K R+ ++ + + W KYA E + + + +YERA+
Sbjct: 52 ITDKEEL-NDYKLKKRKGFEDNIRKNRTVISNWIKYAQWEESLQEVQRSRSIYERALDVD 110
Query: 166 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSR 225
++ +WL Y + R +++R + + F W KY E M +
Sbjct: 111 HRNITLWLKYAEMEMKNR-QVNHARNIWDRAITILPR-VNQF--WYKYTYMEEMLGNIAG 166
Query: 226 VAMIYTRILE-NPIQQLDRYFSSFK 249
++ R +E P +Q + +F+
Sbjct: 167 CRQVFERWMEWEPEEQAWHSYINFE 191
Score = 69 (29.3 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 58/276 (21%), Positives = 106/276 (38%)
Query: 359 WHNYLDFIERD-GDFNKVVKLYERCLIACAN----YPEYWIRYVLCMEASGSMDLAHNAL 413
W NY + E + D + ++Y+ CL + + + W+ Y ++ A L
Sbjct: 376 WINYALYEELEVKDPERTRQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNARRGL 435
Query: 414 ARATHVFVKRLPEIHLFAA--RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471
A + + P+ LF + Q + D R Y+ + E SP IK A +E
Sbjct: 436 GTA----IGKCPKNKLFKGYIELELQLREFDRCRKLYEK-YLEFSPENCTTWIKFAELET 490
Query: 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531
LG+ + + +++E AI G+ +L+ Y F + + R + L
Sbjct: 491 ILGDTDRSRAIFELAI----GQPRLDMPEVLWKSYIDF-EIEQEEYDNTRGLYKRLLQRT 545
Query: 532 QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL 591
Q K + + FE + ++ Q+ ++ +N N E+EE + LE
Sbjct: 546 QHVKVWI-SYAQFELSIDTEDRVQRCRQVYEE---ANK---GMQNCEEKEE-RLMLLESW 597
Query: 592 GLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAED 627
+ + + R LP + + RK AED
Sbjct: 598 RDY-EEEFGSFTHKERVRKLLPEK-VKKRRKITAED 631
Score = 41 (19.5 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 20/85 (23%), Positives = 34/85 (40%)
Query: 288 EEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRR--PY 345
E+ VQ Q + + G+ EE E+ + + E +EF S + +R+ P
Sbjct: 564 EDRVQ--RCRQVYEEANKGMQNCEEKEERLMLLESWRDYEEEFGS--FTHKERVRKLLPE 619
Query: 346 FHVKPLSVTELEN----WHNYLDFI 366
K +T + W Y D+I
Sbjct: 620 KVKKRRKITAEDGSDAGWEEYYDYI 644
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 137 (53.3 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 40/150 (26%), Positives = 75/150 (50%)
Query: 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 175
NI R+V++ ++ P W Y + E R +D+ +YER V V V W+ Y
Sbjct: 205 NIAGARQVFERWMEWQPEEQA-WHSYINFELRYKEVDRARTIYERFVL-VHPDVKNWIKY 262
Query: 176 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT---- 231
F +G R+++ER + + G +++ L+ + ++E Q+E+ RV +IY
Sbjct: 263 ARFE-EKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALD 321
Query: 232 RILENPIQQLDRYFSSF-KEFAASRPLSEL 260
RI + Q+L + ++ F K+F R + ++
Sbjct: 322 RISKQEAQELFKNYTIFEKKFGDRRGIEDI 351
Score = 84 (34.6 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 62/277 (22%), Positives = 111/277 (40%)
Query: 359 WHNYLDFIERDG-DFNKVVKLYERCLIACAN----YPEYWIRYVLCMEASGSMDLAHNAL 413
W NY + E + D + ++Y+ L + + + W+ Y ++ A AL
Sbjct: 417 WVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRAL 476
Query: 414 ARATHVFVKRLPEIHLFAA--RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471
+ + + P+ LF + Q + D R Y+ E P + IK A +E
Sbjct: 477 GTS----IGKCPKNKLFKGYIELELQLREFDRCRKLYEKF-LEFGPENCTSWIKFAELET 531
Query: 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLP-MLYAQYSRFLHLVSRNAEKARQILVDSLDH 530
LG++E A ++YE AI+ + +P +L+ Y F + E+ R + L
Sbjct: 532 ILGDIERARAIYELAIS-----QPRLDMPEVLWKSYIDF-EIEQEETERTRNLYRRLLQR 585
Query: 531 VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF 590
Q K I F + S ++ L + + +N + N E+EE + LE
Sbjct: 586 TQHVK----VWISFAQFELSSRKEGSLAKCRQIYEEANK---TMRNCEEKEE-RLMLLES 637
Query: 591 LGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAED 627
F D ++R +L +P + + RK A+D
Sbjct: 638 WRSFEDEFGTVSDKERVDKL-MPEK-VKKRRKVQADD 672
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 121 (47.7 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 56/223 (25%), Positives = 100/223 (44%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCL--IACANYPEYWIRYV-LCMEASGSMDLAHNALAR 415
W +YL E +G+ K ++YER + + N ++W RY+ L + + +L + R
Sbjct: 327 WFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHWKRYIYLWINYALFEELISKDMER 386
Query: 416 ATHVF---VKRLP-------EIHLFAARFKEQNGDIDGARAAY-QLVHTETSPGLLEAII 464
A V+ +K +P +I + A F+ + ++D AR Y Q + + + I
Sbjct: 387 ARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDKARLIYGQAIGRNPKSKIFDQYI 446
Query: 465 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE--KARQ 522
H +E LGN + +LYE+ + I +P + +F L + E +AR
Sbjct: 447 -HLEIE--LGNFDRVRTLYEKYLEI---------MPDNCDAWCKFAQLETELGETVRARA 494
Query: 523 ILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 565
I ++ L +P + +S + KQ DF++QL K L
Sbjct: 495 IFELAIQQPNLDRPEVVWKDFIDS-EIQLKQFDFVKQLYRKLL 536
Score = 100 (40.3 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 26/115 (22%), Positives = 51/115 (44%)
Query: 138 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGL 197
W Y E R+ + ++E+ + Y + W+ Y F G+ E R +F+R +
Sbjct: 179 WNSYLKFEQRLKLFENTRLIFEKYILVHPY-IKTWIKYTKFE-ERLGNIENARTIFQRAI 236
Query: 198 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-PIQQLDRYFSSFKEF 251
++G D L+ + ++E +E R +IY +++ P + F +F F
Sbjct: 237 EFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNF 291
Score = 98 (39.6 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 34/153 (22%), Positives = 72/153 (47%)
Query: 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158
++AW EE++K ++ + R V++ FL W KYA+ E + +++ ++
Sbjct: 81 YAAW----EESQK----DLTRARSVFERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIW 132
Query: 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEY 218
+RAV + +W Y F + G+ R +FER + + W+ Y+++E
Sbjct: 133 DRAVCLLPRVSQLWFKYT-FMEDMLGNYPAARAIFERWMQWKPEPQA----WNSYLKFEQ 187
Query: 219 MQQEWSRVAMIYTR-ILENPIQQLDRYFSSFKE 250
+ + +I+ + IL +P + ++ F+E
Sbjct: 188 RLKLFENTRLIFEKYILVHPYIKTWIKYTKFEE 220
Score = 62 (26.9 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 29/148 (19%), Positives = 64/148 (43%)
Query: 105 LLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG 164
++ + E+L +D ++ R+ Y++ L + KYA E + + V+ER +
Sbjct: 46 VITDQEEL-EDYRLRKRQQYESLLGRNRKTAAIYIKYAAWEESQKDLTRARSVFERFLD- 103
Query: 165 VTYSVD-IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW 223
+ + + +W+ Y + + R +++R + + +S LW KY E M +
Sbjct: 104 IDHRIPTVWIKYAEMEMKNK-NINLARNIWDRAVCLLPR--VS-QLWFKYTFMEDMLGNY 159
Query: 224 SRVAMIYTRILE-NPIQQLDRYFSSFKE 250
I+ R ++ P Q + F++
Sbjct: 160 PAARAIFERWMQWKPEPQAWNSYLKFEQ 187
>UNIPROTKB|B7ZKM0 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AC008119
InterPro:IPR008669 Pfam:PF05391 UniGene:Hs.584842 HGNC:HGNC:16860
HOVERGEN:HBG053888 ChiTaRS:SART3 EMBL:AC010206 EMBL:BC143253
IPI:IPI00719256 SMR:B7ZKM0 STRING:B7ZKM0 Ensembl:ENST00000431469
UCSC:uc010swx.1 Uniprot:B7ZKM0
Length = 927
Score = 144 (55.7 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 65/276 (23%), Positives = 119/276 (43%)
Query: 2 DPNAVMQQAPGVGAPGSGDNV--ATSENEAMGSSQAAG-YNSMNGNVVNEAGNATSTENG 58
+P A + P A G D V A + + + + AA Y +M G ++ S +G
Sbjct: 11 EPEAESKAGPK--ADGEEDEVKAARTRRKVLSRAVAAATYKTM-GPAWDQQEEGVSESDG 67
Query: 59 TSLGIESGAAA--GQ-EL-VDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQ 114
+ S A + G+ E D E +RL + N D++ L+ +
Sbjct: 68 DEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIRLLR--LE 125
Query: 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS--MDK--VVEVYERAVQGVTYSVD 170
+ K+R FPL W ++ E + +D+ V +++E+AV+ +
Sbjct: 126 GELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDYICP-N 184
Query: 171 IWLHYCIFAINTYGDP---ETIRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQQEWSRV 226
IWL Y +++ G E +R +FER L+ VG LW+ Y E+E E +R+
Sbjct: 185 IWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVEAARL 244
Query: 227 AMIYT---RILENPIQQLDRYFSSFKEFAASRPLSE 259
+++ R L P+ ++ F+ ++E++ P+ E
Sbjct: 245 EKVHSLFRRQLAIPLYDMEATFAEYEEWSED-PIPE 279
Score = 66 (28.3 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 1035 SVYVRNLPSTVTA--FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+V+V NLP ++ ++ F+ G + NR D G CY VEF++ A
Sbjct: 669 TVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCY--VEFKEEKSALQA 726
Query: 1093 IQASPIQLAGRQVYI 1107
++ + GR +++
Sbjct: 727 LEMDRKSVEGRPMFV 741
Score = 59 (25.8 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARAT 417
W Y + GD K R + ++YPE+ +L ME + GS++ A+ + T
Sbjct: 475 WLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGSLEDWDIAVQK-T 533
Query: 418 HVFVKRLPEIHLFAARFKE 436
+ R+ E + AA KE
Sbjct: 534 ETRLARVNEQRMKAAE-KE 551
Score = 57 (25.1 bits), Expect = 9.1e-08, Sum P(3) = 9.1e-08
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQ 1090
E +++ LP + T E+EE + G +K D V NR G+ Y VE+E+ S
Sbjct: 763 EKHKLFISGLPFSCTKEELEEICKAHGTVK-DLRLVTNRAGKPKGLAY--VEYENESQAS 819
Query: 1091 NAI 1093
A+
Sbjct: 820 QAV 822
Score = 44 (20.5 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 23/94 (24%), Positives = 32/94 (34%)
Query: 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA--RFKEQNGDIDGA 444
A Y W+ Y A G AL RA PE H+ + G ++
Sbjct: 469 AKYANMWLEYYNLERAHGDTQHCRKALHRAVQC-TSDYPE-HVCEVLLTMERTEGSLEDW 526
Query: 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478
A Q T + + E +K A E L E+
Sbjct: 527 DIAVQKTETRLAR-VNEQRMKAAEKEAALVQQEE 559
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 136 (52.9 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 39/153 (25%), Positives = 76/153 (49%)
Query: 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG-VTYSVDI--W 172
NI R+V++ ++ P W Y + E R +D+ +YER + V D+ W
Sbjct: 248 NIAGARQVFERWMEWRPEEQA-WHSYINFELRYKEVDRARTIYERYIHSLVLVHPDVKNW 306
Query: 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT- 231
+ Y F +G R+++ER + + G +++ L+ + ++E Q+E+ RV +IY
Sbjct: 307 IKYARFE-EKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 365
Query: 232 ---RILENPIQQLDRYFSSF-KEFAASRPLSEL 260
RI + Q+L + ++ F K+F R + ++
Sbjct: 366 ALDRISKQEAQELFKNYTIFEKKFGDRRGIEDI 398
Score = 97 (39.2 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 45/206 (21%), Positives = 90/206 (43%)
Query: 345 YFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL--IACANYPEY-WIRYVLCME 401
Y H L +++NW Y F E+ G F K+YER + + E+ ++ + E
Sbjct: 292 YIHSLVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEE 351
Query: 402 ASGSMD----LAHNALARATHVFVKRLPEIH-LFAARFKEQNG--DIDGARAAYQLVH-T 453
+ + AL R + + L + + +F +F ++ G DI ++ +Q
Sbjct: 352 NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEV 411
Query: 454 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA----IEKGKEHSQTLPMLYAQYSRF 509
+ +P +A + + E +YE+AIA +++ K H + L+ Y+ +
Sbjct: 412 KANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQE-KRHWKRYIYLWINYALY 470
Query: 510 LHLVSRNAEKARQILVDSLDHVQLSK 535
L +++ E+ RQ+ SL+ + K
Sbjct: 471 EELEAKDPERTRQVYQASLELIPHKK 496
Score = 83 (34.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 61/277 (22%), Positives = 111/277 (40%)
Query: 359 WHNYLDFIERDG-DFNKVVKLYERCLIACAN----YPEYWIRYVLCMEASGSMDLAHNAL 413
W NY + E + D + ++Y+ L + + + W+ Y ++ A AL
Sbjct: 464 WINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRAL 523
Query: 414 ARATHVFVKRLPEIHLFAA--RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471
+ + + P+ LF + Q + D R Y+ E P + IK A +E
Sbjct: 524 GTS----IGKCPKNKLFKGYIELELQLREFDRCRKLYEKF-LEFGPENCTSWIKFAELET 578
Query: 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLP-MLYAQYSRFLHLVSRNAEKARQILVDSLDH 530
LG++E A ++YE AI+ + +P +L+ Y F + E+ R + L
Sbjct: 579 ILGDIERARAIYELAIS-----QPRLDMPEVLWKSYIDF-EIEQEETERTRNLYRRLLQR 632
Query: 531 VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF 590
Q K + + FE + Q+ ++ +N + N E+EE + LE
Sbjct: 633 TQHVKVWI-SFAQFELSSGKEGSLAKCRQIYEE---ANK---TMRNCEEKEE-RLMLLES 684
Query: 591 LGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAED 627
F D ++R +L +P + + RK A+D
Sbjct: 685 WRNFEDEFGTASDKERVDKL-MPEK-VKKRRKVQADD 719
Score = 79 (32.9 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 31/146 (21%), Positives = 63/146 (43%)
Query: 106 LEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 165
+ + E+L D ++ R+ ++ + + W KYA E + + + +YERA+ V
Sbjct: 137 ITDEEEL-NDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALD-V 194
Query: 166 TY-SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWS 224
Y ++ +WL Y + R +++R + + F W KY E M +
Sbjct: 195 DYRNITLWLKYAEMEMKNR-QVNHARNIWDRAITTLPR-VNQF--WYKYTYMEEMLGNIA 250
Query: 225 RVAMIYTRILE-NPIQQLDRYFSSFK 249
++ R +E P +Q + +F+
Sbjct: 251 GARQVFERWMEWRPEEQAWHSYINFE 276
>POMBASE|SPAC6F12.17 [details] [associations]
symbol:rna14 "mRNA cleavage and polyadenylation
specificity factor complex subunit Rna14 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 PomBase:SPAC6F12.17
GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006378
Gene3D:1.25.40.10 GO:GO:0005847 GO:GO:0006379 eggNOG:COG5107
KO:K14408 OrthoDB:EOG49S9G9 PIR:T11668 RefSeq:NP_593303.1
ProteinModelPortal:O14233 STRING:O14233 EnsemblFungi:SPAC6F12.17.1
GeneID:2541600 KEGG:spo:SPAC6F12.17 OMA:YTKWENE NextBio:20802694
Uniprot:O14233
Length = 733
Score = 174 (66.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 57/230 (24%), Positives = 97/230 (42%)
Query: 42 NGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSVPAMSGEED---RLWNIVKANSSD 98
+ N++ ++ EN TS ES A V D +L + ++ N +D
Sbjct: 12 SSNIIKDSPKIKEQEN-TSTVNESDVLATSTTASSGVKRKRLPNDLVGQLRDKIQENPND 70
Query: 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158
S+W AL+EE + ++R Y+ L FP W Y E V ++
Sbjct: 71 ISSWYALVEEYGSKGKHE--ELRETYEQMLRPFPYVPRVWVDYISSELAFNDFHAVELLF 128
Query: 159 ERAVQGVTYSVDIWLHYCIFA--INTYGDPE---TIRRLFERGLAYVGTDYLSFPLWDKY 213
R + V SVD+W Y + IN G+ + TI + +E + +G D LS P+W ++
Sbjct: 129 SRCLVKVL-SVDLWTLYLSYIRRINPDGEGQSRSTITQAYEFVINTIGVDILSGPIWSEF 187
Query: 214 IEYEY---------MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAAS 254
+++ QQ+ V IY R + PI +++ + + F S
Sbjct: 188 VDFLRSGPANSTWEQQQKLDHVRRIYQRAITTPIHNIEKLWRDYDAFENS 237
Score = 43 (20.2 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPE 391
+ +LD+ GD N + L +R + YP+
Sbjct: 548 YQKWLDYESNYGDLNAAIALSQRMAVV---YPQ 577
>SGD|S000002643 [details] [associations]
symbol:PRP42 "U1 snRNP protein involved in splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] SGD:S000002643 EMBL:BK006938 GO:GO:0003723
eggNOG:COG0457 EMBL:Z49701 GO:GO:0000398 GO:GO:0071004
GO:GO:0005685 GeneTree:ENSGT00390000005033 OrthoDB:EOG4DNJD8
EMBL:AF020682 PIR:S54531 RefSeq:NP_010521.1
ProteinModelPortal:Q03776 SMR:Q03776 DIP:DIP-2836N IntAct:Q03776
MINT:MINT-619717 STRING:Q03776 PaxDb:Q03776 EnsemblFungi:YDR235W
GeneID:851821 KEGG:sce:YDR235W CYGD:YDR235w HOGENOM:HOG000115713
OMA:FWEMYLE NextBio:969692 Genevestigator:Q03776 GermOnline:YDR235W
Uniprot:Q03776
Length = 544
Score = 135 (52.6 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 34/139 (24%), Positives = 66/139 (47%)
Query: 111 KLAQDNIVK-IRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY-S 168
K + ++K IR Y + L EFP Y+ +A E ++G++ ++++R +Q S
Sbjct: 46 KSTEPQLLKLIRCTYSSMLNEFPYLENYYIDFALLEYKLGNVSMSHKIFQRGLQAFNQRS 105
Query: 169 VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAM 228
+ +W Y F N + + + +E YVG + S WD Y+E + S+
Sbjct: 106 LLLWTSYLKFCNNVISHQKQLFKKYETAEEYVGLHFFSGEFWDLYLEQISSRCTSSKKYW 165
Query: 229 -IYTRILENPIQQLDRYFS 246
+ +ILE P+ ++++
Sbjct: 166 NVLRKILEIPLHSFSKFYA 184
Score = 77 (32.2 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 28/86 (32%), Positives = 44/86 (51%)
Query: 314 EKYIAVREEMYKKAKEFDSKI-IGFETAIRRPYFHVKPLSVTELENWHNYLDF-IERDGD 371
E Y+ V+ ++ + F+SKI I + T+ P V S E+E W YLD+ I D
Sbjct: 239 EMYMVVQYQVLEIYSIFESKIYINYYTS---PETLV---SSDEIETWIKYLDYTITLQTD 292
Query: 372 FNKVVKL-YERCLIACANYPEYWIRY 396
+ L ++R L+ A+Y WI+Y
Sbjct: 293 --SLTHLNFQRALLPLAHYDLVWIKY 316
>UNIPROTKB|E2QXZ2 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GeneTree:ENSGT00550000074656
InterPro:IPR008669 Pfam:PF05391 OMA:SQAVMKM EMBL:AAEX03014754
Ensembl:ENSCAFT00000018071 Uniprot:E2QXZ2
Length = 1082
Score = 146 (56.5 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 73/336 (21%), Positives = 134/336 (39%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
E +RL + N D++ L+ + + K+R FPL W ++
Sbjct: 216 EIERLEEQLSINVYDYNCHVDLIRLLR--LEGELTKVRMARQKMSEIFPLTEELWLEWLH 273
Query: 144 HEARVG--SMDK--VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDP---ETIRRLFERG 196
E + +D+ V E++E+AV+ +IWL Y +++ G E +R +FER
Sbjct: 274 DEISMALDGLDREHVYELFEKAVKDYICP-NIWLEYGQYSVGGIGQKGGLEKVRSVFERA 332
Query: 197 LAYVGTDYLS-FPLWDKYIEYEYMQQEWSRVAMIYT---RILENPIQQLDRYFSSFKEFA 252
L+ VG +W+ Y E+E E +R+ ++ R L P+ ++ F+ ++E++
Sbjct: 333 LSSVGLHMTKGLAIWEAYREFESAIVEAARLEKVHNLFRRQLAIPLYDMEATFAEYEEWS 392
Query: 253 ASRPLSELRTXXXXXXXXXXXXXXPSETG---AEV-KANEEEVQPDATEQTSKPVSAGLT 308
P+ E P E AE + E + D + P L
Sbjct: 393 ED-PIPESVIQNYNKALQQLERYKPYEEALLQAEAPRLAEYQAYIDFEMKIGDPARVQLI 451
Query: 309 EAEELEKYIAVREEMYKKAKEFDS--KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 366
L + V + + ++ D K+ ++ P +V W YL +
Sbjct: 452 FERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAVRNCPWTVAL---WTRYLLAM 508
Query: 367 ERDGDFNKVVKL-YERCL----IACANYPEYWIRYV 397
ER G ++V+ + +E+ L I +Y E W Y+
Sbjct: 509 ERHGVDHRVISVTFEKALSAGFIQATDYVEIWQAYL 544
Score = 123 (48.4 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 38/169 (22%), Positives = 85/169 (50%)
Query: 91 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVG 149
+++A + + + A ++ K+ +++ +++ L E L W +Y+ + + ++
Sbjct: 421 LLQAEAPRLAEYQAYIDFEMKIGDP--ARVQLIFERALVENCLVPDLWIRYSQYLDRQLK 478
Query: 150 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG-DPETIRRLFERGLA--YV-GTDYL 205
D V+ V+ RAV+ ++V +W Y + A+ +G D I FE+ L+ ++ TDY+
Sbjct: 479 VKDLVLSVHNRAVRNCPWTVALWTRY-LLAMERHGVDHRVISVTFEKALSAGFIQATDYV 537
Query: 206 SFPLWDKYIEY-----EYMQ---QEWSRVAMIYTRILENPIQQLDRYFS 246
+W Y++Y ++ Q +E + +TR LE Q+++ F+
Sbjct: 538 E--IWQAYLDYLRRRVDFKQDSSKELEELRSAFTRALEYLKQEVEERFN 584
Score = 71 (30.1 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 1035 SVYVRNLPSTVTAFEIEEE--FQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+V+V NLP ++ E++ F+ G + NR D G CY VEF++ A
Sbjct: 824 TVFVSNLPYSMDEPEVKLRPLFEACGEVTEIRPIFSNRGDFRGYCY--VEFKEEKSALQA 881
Query: 1093 IQASPIQLAGRQVYI 1107
++ + GR +++
Sbjct: 882 LELDRKTVEGRPMFV 896
Score = 58 (25.5 bits), Expect = 7.7e-07, Sum P(3) = 7.7e-07
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQ 1090
E ++V LP + T E+EE + G +K D V NR G+ Y VE+E+ S
Sbjct: 918 EKHKLFVSGLPFSCTKEELEEICKAHGTVK-DIRLVTNRAGKPKGLAY--VEYENESQAS 974
Query: 1091 NAI 1093
A+
Sbjct: 975 QAV 977
Score = 56 (24.8 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARAT 417
W Y + GD K R + ++YPE+ +L ME + G+++ A+ + T
Sbjct: 630 WLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGTLEDWDIAVQK-T 688
Query: 418 HVFVKRLPEIHLFAARFKE 436
+ R+ E + AA KE
Sbjct: 689 ETRLARVNEQRIKAAE-KE 706
Score = 49 (22.3 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 24/94 (25%), Positives = 32/94 (34%)
Query: 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA--RFKEQNGDIDGA 444
A Y W+ Y A G AL RA PE H+ + G ++
Sbjct: 624 AKYANMWLEYYNLERAHGDTQHCRKALHRAVQC-TSDYPE-HVCEVLLTMERTEGTLEDW 681
Query: 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478
A Q T + + E IK A E L E+
Sbjct: 682 DIAVQKTETRLAR-VNEQRIKAAEKEAALAQQEE 714
Score = 39 (18.8 bits), Expect = 9.1e-05, Sum P(3) = 9.1e-05
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 284 VKANEEEVQ-PDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSK 333
+KA E+E E+ ++ E + L+K R +KA+E D K
Sbjct: 700 IKAAEKEAALAQQEEEKAEQRKRARAEKKALKKKKKTRGADKRKAEEDDEK 750
Score = 38 (18.4 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 980 TASTTSDWNPAPQPTTQQSNYTSS 1003
T + ++ PAPQP S T +
Sbjct: 1044 TTAAQAENGPAPQPAVTTSAATEA 1067
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 113 (44.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 34/150 (22%), Positives = 69/150 (46%)
Query: 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 175
N+ R+V++ ++ P W Y + E R +D+ +Y + V V W+ Y
Sbjct: 180 NVAGSRQVFERWMEWQPEEQA-WHSYINFELRYKEVDRARTIYIALLVIVHPDVKNWIKY 238
Query: 176 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 235
F + R+++ER + + G +++ L+ + ++E Q+E+ RV +IY L+
Sbjct: 239 ARFE-EKHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQKEFERVRVIYKYALD 297
Query: 236 N-PIQQLDRYFSSF----KEFAASRPLSEL 260
P Q F ++ K+F R + ++
Sbjct: 298 RIPKQDAQNLFKNYTIFEKKFGDRRGIEDI 327
Score = 102 (41.0 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 62/277 (22%), Positives = 115/277 (41%)
Query: 359 WHNYLDFIERDG-DFNKVVKLYERCLIACAN----YPEYWIRYVLCMEASGSMDLAHNAL 413
W NY + E + D + ++Y+ C+ + + + W+ Y ++ LA AL
Sbjct: 393 WINYALYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQKNLPLARRAL 452
Query: 414 ARATHVFVKRLPEIHLFAA--RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471
+ + + P+ LF + Q + D R Y+ E +P + IK A +E
Sbjct: 453 GTS----IGKCPKNKLFKGYIELELQLREFDRCRKLYEKF-LEFAPENCTSWIKFAELET 507
Query: 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLP-MLYAQYSRFLHLVSRNAEKARQILVDSLDH 530
LG+++ A ++YE AI+ + +P +L+ Y F + EK R + L
Sbjct: 508 ILGDIDRARAIYELAIS-----QPRLDMPEVLWKSYIDF-EIEQEEYEKTRNLYRRLLQR 561
Query: 531 VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF 590
Q K + + FE + + Q+ ++ +N + N E+EE + LE
Sbjct: 562 TQHVKVWI-SFAQFELSAGKEESLSKCRQIYEE---ANK---AMRNCEEKEE-RVMLLES 613
Query: 591 LGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAED 627
F + ++R +L +P + + RK AED
Sbjct: 614 WKTFEEEFGTDSTKERIEKL-MPEK-IKKRRKLQAED 648
Score = 79 (32.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 32/146 (21%), Positives = 63/146 (43%)
Query: 106 LEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 165
+ + E+L D ++ R+ ++ + + W KYA E + + + +YERA+ V
Sbjct: 69 ITDVEEL-NDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALD-V 126
Query: 166 TY-SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWS 224
Y +V +WL Y + R +++R + + F W KY E M +
Sbjct: 127 DYRNVTLWLKYAEMEMKNR-QVNHARNIWDRAITTLPR-VNQF--WYKYTYMEEMLGNVA 182
Query: 225 RVAMIYTRILE-NPIQQLDRYFSSFK 249
++ R +E P +Q + +F+
Sbjct: 183 GSRQVFERWMEWQPEEQAWHSYINFE 208
>UNIPROTKB|E5RIZ6 [details] [associations]
symbol:G3BP1 "Ras GTPase-activating protein-binding protein
1" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30292 ChiTaRS:G3BP1
EMBL:AC091982 IPI:IPI00974560 ProteinModelPortal:E5RIZ6 SMR:E5RIZ6
Ensembl:ENST00000507878 ArrayExpress:E5RIZ6 Bgee:E5RIZ6
Uniprot:E5RIZ6
Length = 148
Score = 138 (53.6 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 41/118 (34%), Positives = 61/118 (51%)
Query: 723 VGSYFVGQYYQVLQQQPDLVH----------QFYSDASSMIR--VD--GDSTESASSMLD 768
VG FV QYY +L Q PD++H +FY SS + +D G ++ +
Sbjct: 11 VGREFVRQYYTLLNQAPDMLHSLHIGYHMIIRFYGKNSSYVHGGLDSNGKPADAVYGQKE 70
Query: 769 IHSLVISLNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824
IH V+S NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+
Sbjct: 71 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPE 127
Score = 126 (49.4 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 36/109 (33%), Positives = 58/109 (53%)
Query: 741 LVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNG 794
++ +FY SS + +D G ++ +IH V+S NFT +I+ +++ + N
Sbjct: 39 MIIRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLND 98
Query: 795 GVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLNDIFHFLDE 840
GV+V V G + RR F+QTF LAP+ ++V NDIF + DE
Sbjct: 99 GVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYVHNDIFRYQDE 146
>UNIPROTKB|F1RGA7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 OMA:SQAVMKM EMBL:CU424486
RefSeq:XP_001926720.3 UniGene:Ssc.37664 Ensembl:ENSSSCT00000010898
GeneID:100152586 KEGG:ssc:100152586 Uniprot:F1RGA7
Length = 959
Score = 139 (54.0 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 71/334 (21%), Positives = 133/334 (39%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
E +RL + N D++ L+ + + K+R FPL W ++
Sbjct: 98 EIERLEEQLSINVYDYNCHVDLIRLLR--LEGELTKVRMARQKMSEIFPLTEELWLEWLH 155
Query: 144 HEARVG--SMDK--VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDP---ETIRRLFERG 196
E + +D+ V +++E+AV+ +IWL Y +++ G E +R +FER
Sbjct: 156 DEISMALDGLDREHVYDLFEKAVKDYICP-NIWLEYGQYSVGGIGQKGGLEKVRSVFERA 214
Query: 197 LAYVGTDYLS-FPLWDKYIEYEYMQQEWSRVAMIYT---RILENPIQQLDRYFSSFKEFA 252
L+ VG +W+ Y E+E E +R+ +++ R L P+ ++ F+ ++E++
Sbjct: 215 LSSVGLHMTKGLAIWEAYREFESAIVEAARLEKVHSLFRRQLAIPLYDMEATFAEYEEWS 274
Query: 253 ASRPLSELRTXXXXXXXXXXXXXXPSETG---AEV-KANEEEVQPDATEQTSKPVSAGLT 308
P+ E P E AE + E + D + P L
Sbjct: 275 ED-PIPESVIQNYNKALQQLEKYKPYEEALLQAEAPRLAEYQAYIDFEMKIGDPARIQLI 333
Query: 309 EAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER 368
L + V + + ++ D ++ + + V+ T + W YL +ER
Sbjct: 334 FERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHSRAVRNCPWT-VALWSRYLLAMER 392
Query: 369 DG-DFNKVVKLYERCL----IACANYPEYWIRYV 397
G D + +E+ L I +Y E W Y+
Sbjct: 393 HGVDHRGISVTFEKALSAGFIQATDYVEIWQAYL 426
Score = 116 (45.9 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 38/169 (22%), Positives = 84/169 (49%)
Query: 91 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVG 149
+++A + + + A ++ K+ +I+ +++ L E L W +Y+ + + ++
Sbjct: 303 LLQAEAPRLAEYQAYIDFEMKIGDP--ARIQLIFERALVENCLVPDLWIRYSQYLDRQLK 360
Query: 150 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG-DPETIRRLFERGLA--YV-GTDYL 205
D V+ V+ RAV+ ++V +W Y + A+ +G D I FE+ L+ ++ TDY+
Sbjct: 361 VKDLVLSVHSRAVRNCPWTVALWSRY-LLAMERHGVDHRGISVTFEKALSAGFIQATDYV 419
Query: 206 SFPLWDKYIEY-----EYMQ---QEWSRVAMIYTRILENPIQQLDRYFS 246
+W Y++Y ++ Q +E + + R LE Q+++ F+
Sbjct: 420 E--IWQAYLDYLRRRVDFKQDSSKELEELRSAFARALEYLKQEVEERFN 466
Score = 74 (31.1 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 1035 SVYVRNLPSTVT--AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+V+V NLP ++ A + F+ G + NR D G CY VEF++ + Q A
Sbjct: 701 TVFVSNLPYSLEEPATVLRPLFEACGDVVEIRPIFSNRGDFRGYCY--VEFKEEAAAQRA 758
Query: 1093 IQASPIQLAGRQVYI 1107
++ + GR +++
Sbjct: 759 LELDRKSVEGRPMFV 773
Score = 57 (25.1 bits), Expect = 3.4e-06, Sum P(3) = 3.4e-06
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQ 1090
E +++ LP + T E+EE + G +K D V NR G+ Y VE+E+ S
Sbjct: 795 EKHKLFISGLPFSCTREELEEICKAHGTVK-DIRLVTNRAGKPKGLAY--VEYENESQAS 851
Query: 1091 NAI 1093
A+
Sbjct: 852 QAV 854
Score = 56 (24.8 bits), Expect = 3.3e-06, Sum P(3) = 3.3e-06
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARAT 417
W Y + GD K R + ++YPE+ +L ME + G+++ A+ + T
Sbjct: 512 WLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGTLEDWDIAVQK-T 570
Query: 418 HVFVKRLPEIHLFAARFKE 436
+ R+ E + AA KE
Sbjct: 571 ETRLARVNEQRIKAAE-KE 588
Score = 49 (22.3 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 24/94 (25%), Positives = 32/94 (34%)
Query: 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA--RFKEQNGDIDGA 444
A Y W+ Y A G AL RA PE H+ + G ++
Sbjct: 506 AKYANMWLEYYNLERAHGDTQHCRKALHRAVQC-TSDYPE-HVCEVLLTMERTEGTLEDW 563
Query: 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478
A Q T + + E IK A E L E+
Sbjct: 564 DIAVQKTETRLAR-VNEQRIKAAEKEAALAQQEE 596
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 161 (61.7 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 103/474 (21%), Positives = 196/474 (41%)
Query: 113 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172
+Q + + R V++ L + W KYA+ E + ++ V++R+V + +W
Sbjct: 90 SQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLPRVDQLW 149
Query: 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 232
Y I+ G+ R++FER + + D + W +I++E E R IY R
Sbjct: 150 EKY-IYMEEKLGNVTGARQIFERWMNW-SPDQKA---WLCFIKFELRYNEIERARSIYER 204
Query: 233 -ILENP-IQQLDRYFSSFK-----EFAASRPLSELRTXXXXXXXXXXXXXXPSETGAEVK 285
+L +P + RY + F+ + +R + E R S E +
Sbjct: 205 FVLCHPKVSAFIRY-AKFEMKRGGQVKLAREVYE-RAVDKLANDEEAEILFVSFAEFEER 262
Query: 286 ANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPY 345
E E + + G AEEL K E+ Y + + I+G +
Sbjct: 263 CKEVERARFIYKFALDHIRKG--RAEELYKKFVAFEKQYGDKEGIEDAIVGKKRFEYEDE 320
Query: 346 FHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL--IACANYPEYWIRYV-LCMEA 402
PL+ ++W +Y+ E G+ +++ ++YER + + A +W RY+ L +
Sbjct: 321 VSKNPLNY---DSWFDYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINY 377
Query: 403 SGSMDLAHNALARATHVF---VKRLP-------EIHLFAARFKEQNGDIDGARAAYQLVH 452
+ ++ + R V+ +K +P +I L AA ++ + ++ GAR L +
Sbjct: 378 ALYEEIETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQI--LGN 435
Query: 453 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512
++ K+ ME +L N++ LYE+ + E E+ + Y+ F +
Sbjct: 436 AIGKAPKVKIFKKYIEMELKLVNIDRCRKLYERFL--EWSPENCYA----WRNYAEF-EI 488
Query: 513 VSRNAEKARQILVDSLDHVQLSKP--LLEALIHFESIQSSPKQIDFL-EQLVDK 563
E+AR I ++ L P L + I FE + ++ L E+L+D+
Sbjct: 489 SLAETERARAIFELAISQPALDMPELLWKTYIDFEISEGEFEKTRALYERLLDR 542
>UNIPROTKB|D6RE13 [details] [associations]
symbol:G3BP2 "Ras GTPase-activating protein-binding protein
2" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30291 EMBL:AC104828
HOGENOM:HOG000138029 IPI:IPI00966712 ProteinModelPortal:D6RE13
SMR:D6RE13 Ensembl:ENST00000515457 ArrayExpress:D6RE13 Bgee:D6RE13
Uniprot:D6RE13
Length = 111
Score = 136 (52.9 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 37/102 (36%), Positives = 56/102 (54%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQT 818
+ +I+ +++ + + GV+V V G + RKF+QT
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQ-PERKFMQT 111
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 158 (60.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 106/498 (21%), Positives = 203/498 (40%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N + S W + E L + I + R +Y+ L W KYA+ E + +
Sbjct: 74 IRKNRTVISNWIKYAQWEESLKE--IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQV 131
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWD 211
+ +++RA+ + W Y + G+ R++FER + + + W
Sbjct: 132 NHARNIWDRAITTLPRVNQFWYKYT-YMEEMLGNVAGARQVFERWMEWQPEEQA----WH 186
Query: 212 KYIEYEYMQQEWSRVAMIYTR-ILENP-IQQLDRYFSSFKE----FAASRPLSELRTXXX 265
YI +E +E R IY R +L +P ++ +Y + F+E FA +R + E
Sbjct: 187 SYINFELRYKEVERARTIYERFVLVHPAVKNWIKY-ARFEEKHAYFAHARKVYERAVEFF 245
Query: 266 XXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYK 325
A+ + N++E + EA+EL K + E+ +
Sbjct: 246 GDEHMDEHLYVAF---AKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFG 302
Query: 326 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 385
+ + I+ R Y + + W +YL +E D + + V ++YER A
Sbjct: 303 DRRGIEDIIVSKR---RFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYER---A 356
Query: 386 CANYP-----EYWIRYV-LCMEASGSMDLAHNALARATHVF---VKRLP-------EIHL 429
AN P +W RY+ L + + +L R V+ ++ +P ++ L
Sbjct: 357 IANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWL 416
Query: 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK-HANMERRLGNLEDAFSLYEQAIA 488
+ A+F+ + ++ AR A + T + K + +E +L + LYE+ +
Sbjct: 417 YYAQFEIRQKNLPFARRA---LGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFL- 472
Query: 489 IEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP--LLEALIHFES 546
E G E+ T + +A+ L + + E+AR I ++ +L P L ++ I FE
Sbjct: 473 -EFGPENC-TSWIKFAE----LETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEI 526
Query: 547 IQSSPKQI-DFLEQLVDK 563
Q ++ + QL+ +
Sbjct: 527 EQEETERTRNLYRQLLQR 544
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 158 (60.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 106/498 (21%), Positives = 203/498 (40%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N + S W + E L + I + R +Y+ L W KYA+ E + +
Sbjct: 74 IRKNRTVISNWIKYAQWEESLKE--IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQV 131
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWD 211
+ +++RA+ + W Y + G+ R++FER + + + W
Sbjct: 132 NHARNIWDRAITTLPRVNQFWYKYT-YMEEMLGNVAGARQVFERWMEWQPEEQA----WH 186
Query: 212 KYIEYEYMQQEWSRVAMIYTR-ILENP-IQQLDRYFSSFKE----FAASRPLSELRTXXX 265
YI +E +E R IY R +L +P ++ +Y + F+E FA +R + E
Sbjct: 187 SYINFELRYKEVERARTIYERFVLVHPAVKNWIKY-ARFEEKHAYFAHARKVYERAVEFF 245
Query: 266 XXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYK 325
A+ + N++E + EA+EL K + E+ +
Sbjct: 246 GDEHMDEHLYVAF---AKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFG 302
Query: 326 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 385
+ + I+ R Y + + W +YL +E D + + V ++YER A
Sbjct: 303 DRRGIEDIIVSKR---RFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYER---A 356
Query: 386 CANYP-----EYWIRYV-LCMEASGSMDLAHNALARATHVF---VKRLP-------EIHL 429
AN P +W RY+ L + + +L R V+ ++ +P ++ L
Sbjct: 357 IANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWL 416
Query: 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK-HANMERRLGNLEDAFSLYEQAIA 488
+ A+F+ + ++ AR A + T + K + +E +L + LYE+ +
Sbjct: 417 YYAQFEIRQKNLPFARRA---LGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFL- 472
Query: 489 IEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP--LLEALIHFES 546
E G E+ T + +A+ L + + E+AR I ++ +L P L ++ I FE
Sbjct: 473 -EFGPENC-TSWIKFAE----LETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEI 526
Query: 547 IQSSPKQI-DFLEQLVDK 563
Q ++ + QL+ +
Sbjct: 527 EQEETERTRNLYRQLLQR 544
>UNIPROTKB|F1M2M6 [details] [associations]
symbol:F1M2M6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] InterPro:IPR002075
Pfam:PF02136 GO:GO:0005737 GO:GO:0006810 InterPro:IPR018222
PROSITE:PS50177 GeneTree:ENSGT00390000011365 IPI:IPI00563721
Ensembl:ENSRNOT00000048672 OMA:QSHTISS Uniprot:F1M2M6
Length = 403
Score = 150 (57.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 51/183 (27%), Positives = 85/183 (46%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + PD++H+FY SS +D G ++ +IH V+ NF
Sbjct: 13 VGREFVRQYYTLLNRVPDMLHRFYVKKSSYAHGGLDSNGKPADAVYGQKEIHRKVMLQNF 72
Query: 779 TAIEIKT--INSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
T K +++ + N V+V V G + R F+QTF LAP+ ++V D
Sbjct: 73 TNCHTKIHHVDAYATQNDRVVVQVMGLLSNNNQALWR-FMQTFVLAPEGSTANKFYVHKD 131
Query: 834 IFHFLDEEPVYQHPAPVLSENKFDVQHDASSPIPEQAG--LAASDY-VLEEEAREYVSSV 890
IF DE V+ ++E + + + + P Q + + DY + + E++
Sbjct: 132 IFRHQDE--VF---GGFVTEPQEESEEEVEEPEERQQSPEVVSDDYQTVSNDLEEHLEEP 186
Query: 891 HIE 893
+E
Sbjct: 187 VVE 189
Score = 50 (22.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
+++ NLP V + E + F +IK G++ VVG V F+D VQ +
Sbjct: 323 LFIGNLPHEVD----KSELRIFSKIK--GMWWSCALTVVGSYPISVLFDDSEPVQKVLHN 376
Query: 1096 SPIQLAGRQVY-IEERR 1111
PI + +EE++
Sbjct: 377 RPITFGCAVLLNVEEKK 393
>ZFIN|ZDB-GENE-040724-10 [details] [associations]
symbol:sart3 "squamous cell carcinoma antigen
recognised by T cells 3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IMP] [GO:0031017 "exocrine pancreas
development" evidence=IMP] [GO:0030098 "lymphocyte differentiation"
evidence=IMP] [GO:0048538 "thymus development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
ZFIN:ZDB-GENE-040724-10 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0048538 GO:GO:0000245
GO:GO:0031017 GO:GO:0030098 HOGENOM:HOG000063708 HOVERGEN:HBG053888
EMBL:BC159116 IPI:IPI00483754 UniGene:Dr.78990
ProteinModelPortal:B0JZB9 SMR:B0JZB9 STRING:B0JZB9
ArrayExpress:B0JZB9 Uniprot:B0JZB9
Length = 952
Score = 136 (52.9 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 38/149 (25%), Positives = 79/149 (53%)
Query: 111 KLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVGSMDKVVEVYERAVQGVTYSV 169
++ + + +++ ++ LAE L W KY + + ++ D V+ +ERAV+ +++
Sbjct: 301 EIKEGDPARVQIIFGRALAENCLVPDLWIKYTTYLDRQLKIKDLVLSAHERAVRNCPWTM 360
Query: 170 DIWLHYCIFAINTYG-DPETIRRLFERGL--AYV-GTDYLSFPLWDKYIEYEYMQ----Q 221
+W Y + A+ +G D +T++ +FE+ L ++ TDY+ +W Y++Y + +
Sbjct: 361 GLWKSY-LLALERHGADHQTVKDVFEKALNAGFIQATDYVE--IWQSYLDYLRRRVDFSK 417
Query: 222 EWSR----VAMIYTRILENPIQQLDRYFS 246
EWSR + ++R LE Q ++ FS
Sbjct: 418 EWSRELDELRAAFSRSLEYLKQDVEERFS 446
Score = 128 (50.1 bits), Expect = 2.1e-07, Sum P(5) = 2.1e-07
Identities = 40/170 (23%), Positives = 71/170 (41%)
Query: 56 ENGTSLGIESGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQD 115
E +G+E +E E RL + N+ D++ L++ + +
Sbjct: 32 EEEEGMGVEHSEEEDEEDTSEDERENEAEIQRLEEQLSINAFDYNCHVDLIKLLRQ--EG 89
Query: 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV----GSMDKVVEVYERAVQGVTYSVDI 171
+ ++R+ FPL W + E R+ ++V E++ERA++ +I
Sbjct: 90 KLHRLRKARQKMSELFPLTEEIWLDWLKDEIRITEDESDRERVYELFERAIKDYVCP-EI 148
Query: 172 WLHYCIFAIN---TYGDPETIRRLFERGLAYVGTDYLS-FPLWDKYIEYE 217
WL Y ++I G E +R +FER L VG +W+ Y E+E
Sbjct: 149 WLEYVQYSIGGMGAQGGIERVRSIFERALTAVGLHMTKGASIWEAYREFE 198
Score = 74 (31.1 bits), Expect = 2.1e-07, Sum P(5) = 2.1e-07
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 343 RPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 401
+PY +S +L + +Y+DF ++GD +V ++ R L P+ WI+Y ++
Sbjct: 277 KPYEEALLVSEPPKLAEYQSYIDFEIKEGDPARVQIIFGRALAENCLVPDLWIKYTTYLD 336
Query: 402 ASGSM-DLAHNALARA 416
+ DL +A RA
Sbjct: 337 RQLKIKDLVLSAHERA 352
Score = 58 (25.5 bits), Expect = 2.1e-07, Sum P(5) = 2.1e-07
Identities = 21/74 (28%), Positives = 33/74 (44%)
Query: 1036 VYVRNLPSTVTAFE--IEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
V+V NL + E + FQ G I+ + G CY V+FED V A+
Sbjct: 691 VFVSNLTFNMEDPEGKLRTLFQGCGTIQQVRPVFTAKGTFRGYCY--VQFEDRLAVPEAL 748
Query: 1094 QASPIQLAGRQVYI 1107
+ ++ GR +Y+
Sbjct: 749 KMDRQEVDGRPMYV 762
Score = 55 (24.4 bits), Expect = 4.0e-07, Sum P(5) = 4.0e-07
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
E +++ LP + T +E+ + G I+ + G+ Y VEFED +
Sbjct: 784 EKHKIFISGLPYSATKETLEDLCKEHGTIRAIRIVTNRSGKSKGLAY--VEFEDEAQASQ 841
Query: 1092 AI 1093
A+
Sbjct: 842 AV 843
Score = 55 (24.4 bits), Expect = 3.2e-06, Sum P(4) = 3.2e-06
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 356 LENWHNYLDFIERDGDFNK 374
+E W +YLD++ R DF+K
Sbjct: 399 VEIWQSYLDYLRRRVDFSK 417
Score = 50 (22.7 bits), Expect = 3.9e-05, Sum P(5) = 3.9e-05
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 359 WHNYLDFIERDGDFNKVV-KLYERCLIACANYPEYWIRYVLCMEASGS 405
W Y +++R +V +ER + C W Y+L +E G+
Sbjct: 328 WIKYTTYLDRQLKIKDLVLSAHERAVRNCPWTMGLWKSYLLALERHGA 375
Score = 47 (21.6 bits), Expect = 3.2e-06, Sum P(4) = 3.2e-06
Identities = 21/72 (29%), Positives = 28/72 (38%)
Query: 387 ANYPEYWIRYVLCMEASGSMDLAH--NALARATHVFVKRLPEIHL--FAARFKEQNGDID 442
A Y W+ Y + G D AH AL RA PE H+ F+ G ++
Sbjct: 486 AKYANMWLEYYNLERSYG--DAAHCRKALHRAVQC-TSDYPE-HVCDVLLNFERVEGSLE 541
Query: 443 GARAAYQLVHTE 454
AA Q T+
Sbjct: 542 DWDAAVQKTETK 553
Score = 47 (21.6 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 359 WHNYLDFIERD-GDFNKVVKLYERCLIACANYPEYWIRYVLCME-ASGSMDLAHNALARA 416
W Y + +ER GD K R + ++YPE+ +L E GS++ +A +
Sbjct: 492 WLEYYN-LERSYGDAAHCRKALHRAVQCTSDYPEHVCDVLLNFERVEGSLE-DWDAAVQK 549
Query: 417 THVFVKRLPE 426
T + R+ E
Sbjct: 550 TETKLNRVCE 559
Score = 42 (19.8 bits), Expect = 2.1e-07, Sum P(5) = 2.1e-07
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 489 IEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 519
++ KE S+ L L A +SR L + ++ E+
Sbjct: 413 VDFSKEWSRELDELRAAFSRSLEYLKQDVEE 443
Score = 39 (18.8 bits), Expect = 1.3e-05, Sum P(5) = 1.3e-05
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 1029 DEGEVKSVYVR---NLPSTVTAFEIEEEFQNFGRIKP 1062
+E E+ S +R + STVT +E E FGR P
Sbjct: 617 EEAELPSKRLRGEDDFDSTVTEELMETESGLFGRRAP 653
Score = 38 (18.4 bits), Expect = 2.1e-07, Sum P(5) = 2.1e-07
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 976 SFTKTASTTSDWNPAPQPTTQQSN 999
+F + + DW+ A Q T + N
Sbjct: 532 NFERVEGSLEDWDAAVQKTETKLN 555
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 146 (56.5 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 77/332 (23%), Positives = 135/332 (40%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
E RL + N+ D++ L++ + + +VK+RR FPL W +
Sbjct: 22 EIQRLEEQLSINAFDYNCHLDLIKLLRQ--EGELVKLRRARQKMSELFPLTEEIWLDWLK 79
Query: 144 HEARVGS----MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDP---ETIRRLFERG 196
E ++ S +KV E++ERAV+ +IWL Y ++I G E +R +FER
Sbjct: 80 DEIKMASEVSEREKVYELFERAVKDYICP-EIWLEYAQYSIGGIGQEGGIEKVRSIFERA 138
Query: 197 LAYVGTDYLS-FPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR 255
L VG LW+ Y ++ + + + + QL+R + F+
Sbjct: 139 LTAVGLHVTKGTALWEAY--RSFIIKHYYSFHVPSPEQQQMLCSQLERIHTLFRR-QLGI 195
Query: 256 PLSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE--EL 313
PL ++ P T +K ++ +Q + KP L AE +L
Sbjct: 196 PLLDMEASYAEYEEWSEDPI-PETT---IKNYKKALQQ---LEKCKPYEEALLGAETPKL 248
Query: 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN 373
+Y A + K ++I +E A+ + V +L W Y +++R
Sbjct: 249 AEYQAYIDFEMKAGDPARIQLI-YERAL------AENCLVPDL--WARYNQYLDRQLKVK 299
Query: 374 KVV-KLYERCLIACANYPEYWIRYVLCMEASG 404
++V ++R + C WI+Y+L ME G
Sbjct: 300 ELVLSAHDRAVRNCPWTVGLWIQYLLAMERHG 331
Score = 119 (46.9 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 35/141 (24%), Positives = 73/141 (51%)
Query: 119 KIRRVYDAFLAEFPLCYGYWKKYADH-EARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177
+I+ +Y+ LAE L W +Y + + ++ + V+ ++RAV+ ++V +W+ Y +
Sbjct: 266 RIQLIYERALAENCLVPDLWARYNQYLDRQLKVKELVLSAHDRAVRNCPWTVGLWIQY-L 324
Query: 178 FAINTYG-DPETIRRLFERGL--AYV-GTDYLSFPLWDKYIEY-----EYMQ---QEWSR 225
A+ +G D I +FE+ L ++ TDY+ +W Y++Y ++ Q +E
Sbjct: 325 LAMERHGVDHCIISDMFEKALNAGFIQATDYVE--IWQAYLDYLRRRVDFTQDSSKELEE 382
Query: 226 VAMIYTRILENPIQQLDRYFS 246
+ + R +E Q+++ FS
Sbjct: 383 LRSAFARAVEYLKQEVEERFS 403
Score = 64 (27.6 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 1035 SVYVRNLPSTVTAFEIE--EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+V+V NL +T E++ E F++ G + N+ G CY VEF+D A
Sbjct: 599 TVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCY--VEFKDEKSALQA 656
Query: 1093 IQASPIQLAGRQVYI 1107
+ + GR +++
Sbjct: 657 LGMDRKVVEGRPMFV 671
Score = 52 (23.4 bits), Expect = 3.1e-06, Sum P(4) = 3.1e-06
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQ 1090
E +++ LP + T E+E+ + G +K D V NR G+ Y VE+E+ +
Sbjct: 693 EKHKLFISGLPFSCTKEELEDICKAHGNVK-DIRLVTNRAGKPKGLAY--VEYENEAQAS 749
Query: 1091 NAI 1093
A+
Sbjct: 750 QAV 752
Score = 46 (21.3 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 19/94 (20%), Positives = 41/94 (43%)
Query: 366 IER-DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKR 423
+ER GD K R + ++YPE+ +L +E G+++ +A + T R
Sbjct: 456 LERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTLERIEGTLE-DWDAAVQKTE---NR 511
Query: 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP 457
L ++ A+ + + ++ ++Q + P
Sbjct: 512 LARVNEQRAKLRRKPSKLNKENMSFQFHSSAEQP 545
Score = 41 (19.5 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 539 EALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL 591
+ L+ E ++S P++ D +K S D P + + ++ ++ VF+ L
Sbjct: 554 DGLLLEEEMESGPEKPDHPTNQKEKPSTSRKDVPKVLHDSSKDNIT-VFVSNL 605
Score = 37 (18.1 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 459 LLEAIIKHANMERRLGNLEDA 479
L + + K ANM R NLE A
Sbjct: 439 LSQGMPKDANMGREYYNLERA 459
>UNIPROTKB|E5RI46 [details] [associations]
symbol:G3BP1 "Ras GTPase-activating protein-binding protein
1" species:9606 "Homo sapiens" [GO:0006810 "transport"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30292
ChiTaRS:G3BP1 EMBL:AC091982 IPI:IPI00982785
ProteinModelPortal:E5RI46 SMR:E5RI46 Ensembl:ENST00000520006
ArrayExpress:E5RI46 Bgee:E5RI46 Uniprot:E5RI46
Length = 105
Score = 131 (51.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD++H+FY SS + +D G ++ +IH V+S NF
Sbjct: 11 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSG 802
T +I+ +++ + N GV+V V G
Sbjct: 71 TNCHTKIRHVDAHATLNDGVVVQVMG 96
>UNIPROTKB|E5RIF8 [details] [associations]
symbol:G3BP1 "Ras GTPase-activating protein-binding protein
1" species:9606 "Homo sapiens" [GO:0006810 "transport"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0090090 "negative
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30292
ChiTaRS:G3BP1 EMBL:AC091982 IPI:IPI00982712
ProteinModelPortal:E5RIF8 SMR:E5RIF8 Ensembl:ENST00000523519
ArrayExpress:E5RIF8 Bgee:E5RIF8 Uniprot:E5RIF8
Length = 106
Score = 131 (51.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD++H+FY SS + +D G ++ +IH V+S NF
Sbjct: 11 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSG 802
T +I+ +++ + N GV+V V G
Sbjct: 71 TNCHTKIRHVDAHATLNDGVVVQVMG 96
>FB|FBgn0003559 [details] [associations]
symbol:su(f) "suppressor of forked" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005848
"mRNA cleavage stimulating factor complex" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0016070 "RNA metabolic process" evidence=NAS]
InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843 SMART:SM00386
EMBL:CM000460 GO:GO:0006379 eggNOG:COG5107 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:X62679 EMBL:BT012671
EMBL:BT021384 EMBL:AY102664 PIR:A46389 PIR:B46389
RefSeq:NP_001015240.1 RefSeq:NP_001015241.3 RefSeq:NP_001104479.1
RefSeq:NP_001104480.2 UniGene:Dm.8029 ProteinModelPortal:P25991
SMR:P25991 DIP:DIP-22591N IntAct:P25991 MINT:MINT-312459
STRING:P25991 PaxDb:P25991 EnsemblMetazoa:FBtr0113732
EnsemblMetazoa:FBtr0306544 GeneID:3354994 KEGG:dme:Dmel_CG17170
CTD:252748 FlyBase:FBgn0003559 InParanoid:P25991 OrthoDB:EOG4V15FR
PhylomeDB:P25991 GenomeRNAi:3354994 NextBio:850013 Bgee:P25991
GO:GO:0005848 Uniprot:P25991
Length = 765
Score = 146 (56.5 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 38/178 (21%), Positives = 82/178 (46%)
Query: 87 RLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 146
R +V+ D +W+ ++ E + I ++R +Y++ + FP YWK Y + E
Sbjct: 21 RAQQVVELRPYDIESWSVMIREAQTRP---IHEVRSLYESLVNVFPTTARYWKLYIEMEM 77
Query: 147 RVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD----PETIRRLFERGLAYVGT 202
R ++V ++++R + + ++D+W Y + T E + + ++ L +G
Sbjct: 78 RSRYYERVEKLFQRCLVKIL-NIDLWKLYLTYVKETKSGLSTHKEKMAQAYDFALEKIGM 136
Query: 203 DYLSFPLWDKYIEY--------EYMQ-QEWSRVAMIYTRILENPIQQLDRYFSSFKEF 251
D SF +W YI + Y + Q+ + V +Y + + PI +++ + + F
Sbjct: 137 DLHSFSIWQDYIYFLRGVEAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAF 194
Score = 60 (26.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY 392
+E W+ +L+F GD + +VK+ R N EY
Sbjct: 515 VEVWNRFLEFESNIGDLSSIVKVERRRSAVFENLKEY 551
Score = 51 (23.0 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 45/207 (21%), Positives = 77/207 (37%)
Query: 407 DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ--LVHTETSPGLLEAII 464
D N L R+ + + R ++ A F+E + Y L + P L+ +
Sbjct: 355 DECANILERSINGVLNRNALLYFAYADFEEGRLKYEKVHTMYNKLLQLPDIDPTLV--YV 412
Query: 465 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL 524
++ RR ++ A S++++A + + H L Y S++ E A +I
Sbjct: 413 QYMKFARRAEGIKSARSIFKKAREDVRSRYHIFVAAALMEYYC------SKDKEIAFRIF 466
Query: 525 VDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELS 584
L S + I + S + L ++ L S SP + E+
Sbjct: 467 ELGLKRFGGSPEYVMCYIDYLSHLNEDNNT---RVLFERVLSSGGLSPHKS-----VEVW 518
Query: 585 CVFLEFLGLFGDAQLIKKAEDRHARLF 611
FLEF GD I K E R + +F
Sbjct: 519 NRFLEFESNIGDLSSIVKVERRRSAVF 545
Score = 40 (19.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 362 YLDFIERDGDFNKVVKLYERCLIACANYP----EYWIRYV 397
Y+D++ + N L+ER L + P E W R++
Sbjct: 483 YIDYLSHLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFL 522
>UNIPROTKB|F8VV04 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00386 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396 EMBL:AC008119
HGNC:HGNC:16860 ChiTaRS:SART3 EMBL:AC010206 IPI:IPI01022491
ProteinModelPortal:F8VV04 SMR:F8VV04 Ensembl:ENST00000546815
UCSC:uc010swy.1 ArrayExpress:F8VV04 Bgee:F8VV04 Uniprot:F8VV04
Length = 771
Score = 147 (56.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 103/428 (24%), Positives = 169/428 (39%)
Query: 2 DPNAVMQQAPGVGAPGSGDNV--ATSENEAMGSSQAAG-YNSMNGNVVNEAGNATSTENG 58
+P A + P A G D V A + + + + AA Y +M G ++ S +G
Sbjct: 11 EPEAESKAGPK--ADGEEDEVKAARTRRKVLSRAVAAATYKTM-GPAWDQQEEGVSESDG 67
Query: 59 TSLGIESGAAA--GQ-EL-VDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQ 114
+ S A + G+ E D E +RL + N D++ L+ +
Sbjct: 68 DEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIRLLR--LE 125
Query: 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS--MDK--VVEVYERAVQGVTYSVD 170
+ K+R FPL W ++ E + +D+ V +++E+AV+ +
Sbjct: 126 GELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDYICP-N 184
Query: 171 IWLHYCIFAINTYGDP---ETIRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQQEWSR- 225
IWL Y +++ G E +R +FER L+ VG LW+ Y E+E E +R
Sbjct: 185 IWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVEAARP 244
Query: 226 VAMIYTRI-LENPIQ-QLDRYFSSFKEFAASRPLSELRTXXXXXXXXXXXXXXPSETGAE 283
VA + E QL++ S F+ A PL ++ E +E
Sbjct: 245 VAGFLSPFDREQTFDSQLEKVHSLFRRQLAI-PLYDMEATFAEY-----------EEWSE 292
Query: 284 VKANEEEVQP--DATEQTSK--PVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFET 339
E +Q A +Q K P L +AE A R Y+ +F+ KI G
Sbjct: 293 DPIPESVIQNYNKALQQLEKYKPYEEALLQAE------APRLAEYQAYIDFEMKI-GDPA 345
Query: 340 AIRRPYFH--VKPLSVTELENWHNYLDFIERDGDFNKVV-KLYERCLIACANYPEYWIRY 396
I+ + V+ V +L W Y +++R +V ++ R + C W RY
Sbjct: 346 RIQLIFERALVENCLVPDL--WIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWTVALWSRY 403
Query: 397 VLCMEASG 404
+L ME G
Sbjct: 404 LLAMERHG 411
Score = 123 (48.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 38/169 (22%), Positives = 85/169 (50%)
Query: 91 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVG 149
+++A + + + A ++ K+ +I+ +++ L E L W +Y+ + + ++
Sbjct: 320 LLQAEAPRLAEYQAYIDFEMKIGDP--ARIQLIFERALVENCLVPDLWIRYSQYLDRQLK 377
Query: 150 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG-DPETIRRLFERGL--AYV-GTDYL 205
D V+ V+ RA++ ++V +W Y + A+ +G D + I FE+ L ++ TDY+
Sbjct: 378 VKDLVLSVHNRAIRNCPWTVALWSRY-LLAMERHGVDHQVISVTFEKALNAGFIQATDYV 436
Query: 206 SFPLWDKYIEY-----EYMQ---QEWSRVAMIYTRILENPIQQLDRYFS 246
+W Y++Y ++ Q +E + +TR LE Q+++ F+
Sbjct: 437 E--IWQAYLDYLRRRVDFKQDSSKELEELRAAFTRALEYLKQEVEERFN 483
Score = 59 (25.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARAT 417
W Y + GD K R + ++YPE+ +L ME + GS++ A+ + T
Sbjct: 529 WLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGSLEDWDIAVQK-T 587
Query: 418 HVFVKRLPEIHLFAARFKE 436
+ R+ E + AA KE
Sbjct: 588 ETRLARVNEQRMKAAE-KE 605
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 23/94 (24%), Positives = 32/94 (34%)
Query: 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA--RFKEQNGDIDGA 444
A Y W+ Y A G AL RA PE H+ + G ++
Sbjct: 523 AKYANMWLEYYNLERAHGDTQHCRKALHRAVQC-TSDYPE-HVCEVLLTMERTEGSLEDW 580
Query: 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478
A Q T + + E +K A E L E+
Sbjct: 581 DIAVQKTETRLAR-VNEQRMKAAEKEAALVQQEE 613
>UNIPROTKB|D6RBR0 [details] [associations]
symbol:G3BP2 "Ras GTPase-activating protein-binding protein
2" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30291 EMBL:AC104828
HOGENOM:HOG000138029 IPI:IPI00965308 ProteinModelPortal:D6RBR0
SMR:D6RBR0 Ensembl:ENST00000507252 ArrayExpress:D6RBR0 Bgee:D6RBR0
Uniprot:D6RBR0
Length = 102
Score = 126 (49.4 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSG 802
+ +I+ +++ + + GV+V V G
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMG 96
>UNIPROTKB|D6REX8 [details] [associations]
symbol:G3BP2 "Ras GTPase-activating protein-binding protein
2" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30291 EMBL:AC104828
IPI:IPI00964602 ProteinModelPortal:D6REX8 SMR:D6REX8
Ensembl:ENST00000511868 ArrayExpress:D6REX8 Bgee:D6REX8
Uniprot:D6REX8
Length = 99
Score = 126 (49.4 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAI--EIKTINSLGSWNGGVLVMVSG 802
+ +I+ +++ + + GV+V V G
Sbjct: 71 SECHTKIRHVDAHATLSDGVVVQVMG 96
>FB|FBgn0032680 [details] [associations]
symbol:Ntf-2r "Nuclear transport factor-2-related"
species:7227 "Drosophila melanogaster" [GO:0006606 "protein import
into nucleus" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177 eggNOG:NOG286483
HSSP:P33331 OrthoDB:EOG43BK59 EMBL:AY150767 EMBL:AY150768
FlyBase:FBgn0032680 InParanoid:Q8I078 Uniprot:Q8I078
Length = 130
Score = 125 (49.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 38/117 (32%), Positives = 58/117 (49%)
Query: 723 VGSYFVGQYYQVLQQQPDL--VHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA 780
+G FV QYY + + V FY+ S + +G+ + A +L+ V SL+F
Sbjct: 10 IGKEFVQQYYAIFDDPANRKNVINFYNATDSFMTFEGNQIQGAPKILE---KVQSLSFQK 66
Query: 781 IE--IKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 835
I I T++S + +GGVL++V G +K + F Q F L P FV +DIF
Sbjct: 67 IARVITTVDSQPTSDGGVLIIVLGRLKCDDD-PPHAFSQIFLLKPNGGSLFVAHDIF 122
>UNIPROTKB|F8W667 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3 EMBL:AC010206
IPI:IPI01022014 ProteinModelPortal:F8W667 SMR:F8W667
Ensembl:ENST00000547528 ArrayExpress:F8W667 Bgee:F8W667
Uniprot:F8W667
Length = 305
Score = 144 (55.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 65/276 (23%), Positives = 119/276 (43%)
Query: 2 DPNAVMQQAPGVGAPGSGDNV--ATSENEAMGSSQAAG-YNSMNGNVVNEAGNATSTENG 58
+P A + P A G D V A + + + + AA Y +M G ++ S +G
Sbjct: 11 EPEAESKAGPK--ADGEEDEVKAARTRRKVLSRAVAAATYKTM-GPAWDQQEEGVSESDG 67
Query: 59 TSLGIESGAAA--GQ-EL-VDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQ 114
+ S A + G+ E D E +RL + N D++ L+ +
Sbjct: 68 DEYAMASSAESSPGEYEWEYDEEEEKNQLEIERLEEQLSINVYDYNCHVDLIRLLR--LE 125
Query: 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS--MDK--VVEVYERAVQGVTYSVD 170
+ K+R FPL W ++ E + +D+ V +++E+AV+ +
Sbjct: 126 GELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDYICP-N 184
Query: 171 IWLHYCIFAINTYGDP---ETIRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQQEWSRV 226
IWL Y +++ G E +R +FER L+ VG LW+ Y E+E E +R+
Sbjct: 185 IWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVEAARL 244
Query: 227 AMIYT---RILENPIQQLDRYFSSFKEFAASRPLSE 259
+++ R L P+ ++ F+ ++E++ P+ E
Sbjct: 245 EKVHSLFRRQLAIPLYDMEATFAEYEEWSED-PIPE 279
>DICTYBASE|DDB_G0291836 [details] [associations]
symbol:DDB_G0291836 "Squamous cell carcinoma antigen
recognized by T-cells 3" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
dictyBase:DDB_G0291836 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AAFI02000185
eggNOG:COG5107 OMA:SQAVMKM RefSeq:XP_629950.1
ProteinModelPortal:Q54E37 EnsemblProtists:DDB0191602 GeneID:8628356
KEGG:ddi:DDB_G0291836 InParanoid:Q54E37 Uniprot:Q54E37
Length = 949
Score = 159 (61.0 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 70/312 (22%), Positives = 131/312 (41%)
Query: 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDK----VVEVYERAVQGVTYSV 169
Q N +R + F + PL W + E + D ++ +YE+A+ SV
Sbjct: 107 QSNYQTLREAREKFQSIHPLSQDIWLAWFSDEQKYMKTDNDKQYILSLYEKALNDFI-SV 165
Query: 170 DIWLHYC--IFAINT-----YGDPETIRRLFERGLAYVGTDYLSFPL-WDKYIEYEYM-- 219
I + YC I INT + + IR+ FER L G D + PL W +Y +E M
Sbjct: 166 KINVSYCKFIIKINTNSGGLINNVKEIRKQFERSLEQCGDDIIESPLLWSEYRMFEQMLL 225
Query: 220 ------QQEWSRVAMI---YTRILENPIQQLDRYFSSFKEFAASRPLSELRTXXXXXXXX 270
+++ +++ +I Y R L NP+ L ++ ++++ S+ +
Sbjct: 226 SQIKDDKEKQTQIKIIRDLYHRQLSNPMIGLHSIYNDYQQWEHSQSIDNNNNNNNNQEKE 285
Query: 271 XXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEF 330
+ E+K E+ E+ +P L E + L++ ++K ++
Sbjct: 286 KEEKEKEEK---EIKLKFEKSLKQFKER--EPFEIALKEKKYLDQRKWKEYIEFEKQQQH 340
Query: 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV-VKLYERCLIACANY 389
+ K + T R +K S W YL ++E+ +F + +K++ R L +
Sbjct: 341 NDKPMRVATLFER---QLKSFS-NHFSIWSFYLTYLEKFTNFKDLHLKVFSRSLRSIYYS 396
Query: 390 PEYWIRYVLCME 401
E+W +Y+L +E
Sbjct: 397 GEHWSKYLLLLE 408
Score = 45 (20.9 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 15/76 (19%), Positives = 33/76 (43%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKP-DGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
K + + NL ++ + F +G+IK V +N K G+C F+ ++ A
Sbjct: 713 KKLIILNLSFDTAEPDLHKIFDKYGQIKSLKLVLDKNGKSK-GIC--FILYKSHESANKA 769
Query: 1093 IQASPIQLAGRQVYIE 1108
++ + R + ++
Sbjct: 770 LEMDQQIIKNRTICVQ 785
Score = 44 (20.5 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 730 QY--YQVLQQQPDLVHQFYSDASSMIRVDGDST 760
QY +++ Q+Q V + + ASS IR D S+
Sbjct: 572 QYISFEMEQKQFQSVRELFKKASSHIRFDDPSS 604
Score = 37 (18.1 bits), Expect = 8.4e-06, Sum P(3) = 8.4e-06
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 960 LRVSKSQSTS-FVATQPSFTKTASTTSDWN 988
++ SK Q + V + + T TA+TT+ N
Sbjct: 784 VQYSKDQQINDHVESNQTLTTTATTTTTTN 813
>FB|FBgn0031145 [details] [associations]
symbol:Ntf-2 "Nuclear transport factor-2" species:7227
"Drosophila melanogaster" [GO:0006606 "protein import into nucleus"
evidence=ISS;NAS] [GO:0008320 "protein transmembrane transporter
activity" evidence=ISS] [GO:0002807 "positive regulation of
antimicrobial peptide biosynthetic process" evidence=IMP]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR002075
Pfam:PF02136 GO:GO:0006810 EMBL:AE014298 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 GeneTree:ENSGT00510000047030
HSSP:P33331 UniGene:Dm.7205 GeneID:33078 KEGG:dme:Dmel_CG1740
CTD:33078 FlyBase:FBgn0031145 GenomeRNAi:33078 NextBio:781834
GO:GO:0002807 EMBL:AY094761 EMBL:AY531117 EMBL:AY673973
RefSeq:NP_608422.1 SMR:Q9VRD6 IntAct:Q9VRD6 MINT:MINT-949859
STRING:Q9VRD6 EnsemblMetazoa:FBtr0077241 EnsemblMetazoa:FBtr0333762
UCSC:CG1740-RA InParanoid:Q9VRD6 OMA:DAIMARF Uniprot:Q9VRD6
Length = 130
Score = 124 (48.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 37/117 (31%), Positives = 58/117 (49%)
Query: 723 VGSYFVGQYYQVLQQQPDLVH--QFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA 780
+G FV QYY + + + FYS S + +G + A +L+ V SL+F
Sbjct: 10 IGKGFVQQYYAIFDDPANRANVVNFYSATDSFMTFEGHQIQGAPKILE---KVQSLSFQK 66
Query: 781 IE--IKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 835
I I T++S +++GGVL+ V G ++ + F Q FFL +FV +DIF
Sbjct: 67 ITRVITTVDSQPTFDGGVLINVLGRLQCDDD-PPHAFSQVFFLKANAGTFFVAHDIF 122
>DICTYBASE|DDB_G0277957 [details] [associations]
symbol:DDB_G0277957 "nuclear transport factor 2
(NTF2) domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0006810 "transport" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002075 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02136 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0277957 GO:GO:0000166 GO:GO:0006810
EMBL:AAFI02000023 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 eggNOG:NOG324333
RefSeq:XP_642031.1 ProteinModelPortal:Q54Z21
EnsemblProtists:DDB0304427 GeneID:8621242 KEGG:ddi:DDB_G0277957
InParanoid:Q54Z21 OMA:STSANVV Uniprot:Q54Z21
Length = 516
Score = 111 (44.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 42/165 (25%), Positives = 81/165 (49%)
Query: 953 RKTYASILRVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTS-SFVPESGVS 1011
++T+A ++ ++ + T+ + +P T+++S++S P+ P++ S+ + S + +
Sbjct: 272 KQTWAQLVLINSTAQTASASEEP--TQSSSSSSS-QPSSSPSSSSSSVNNNSNTTTTTNN 328
Query: 1012 SHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK 1071
+ + + DD +G +V++ S V I+E F FG V N +
Sbjct: 329 TTTTTTANKQKDDHHFSKDGN--TVFISFKSSKVDQAPIKEAFNQFG-------VVSNVR 379
Query: 1072 DVVGVCYAFVEFEDISGVQNAIQ-----ASPIQLAGRQVYIEERR 1111
+ G Y FVEFE VQNA+ ++ I +AG + +EERR
Sbjct: 380 ILTG--YGFVEFEKPESVQNALNYASTHSNKINVAGNIIKVEERR 422
Score = 86 (35.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 29/122 (23%), Positives = 59/122 (48%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR-VDGDSTESASSMLDIHSLVISLNFTAI 781
V + F+ +Y+ +L + P+ + FY S + R + +S +I+ +++ +
Sbjct: 7 VAASFLLKYFTLLIKTPENLKDFYHQNSKITRRFENGKANILTSYDNINEFLVNNSAKFG 66
Query: 782 EIKTINSLGSWNGGVLVMVS--GSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 839
I+S+ G + ++ GS+ RR F+Q+F+L + +F+ NDIF F
Sbjct: 67 GNANISSIDCQPLGESIFMTCIGSIGFDGNVRR--FLQSFYLEKIQGSFFISNDIFAFTS 124
Query: 840 EE 841
+E
Sbjct: 125 DE 126
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 145 (56.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 77/323 (23%), Positives = 131/323 (40%)
Query: 85 EDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLA-EFPLCYGYWKKYAD 143
ED++ K NS W + E +Q + + R V++ L E + W KYA+
Sbjct: 61 EDQIRG-AKTNSQ---VWVRYADWEE--SQKDHDRARSVWERALEDESYRNHTLWLKYAE 114
Query: 144 HEARVGSMDKVVEVYERAVQGVTYSVD-IWLHYCIFAINTYGDPETIRRLFERGLAYVGT 202
E R S++ V++RAV+ + VD W Y I G+ + R++FER + +
Sbjct: 115 FEMRNKSVNHARNVWDRAVK-ILPRVDQFWYKY-IHMEEILGNIDGARKIFERWMDW-SP 171
Query: 203 DYLSFPLWDKYIEYEYMQQEWSRVAMIYTR-ILENP-IQQLDRYFSSFK----EFAASRP 256
D + W +I++E E R IY R +L +P RY + F+ + + +R
Sbjct: 172 DQQA---WLCFIKFELRYNEIERSRSIYERFVLCHPKASSFIRY-AKFEMKNSQVSLARI 227
Query: 257 LSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKY 316
+ E + E E E + + G AE+L K
Sbjct: 228 VYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALDHIPKG--RAEDLYKK 285
Query: 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVV 376
E+ Y + D I+G PL+ ++W +Y+ E GD +++
Sbjct: 286 FVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNPLNY---DSWFDYISLEETLGDKDRIR 342
Query: 377 KLYERCL--IACANYPEYWIRYV 397
++YER + + A YW RY+
Sbjct: 343 EVYERAIANVPLAEEKRYWQRYI 365
Score = 132 (51.5 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 65/298 (21%), Positives = 127/298 (42%)
Query: 277 PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR----EEMYKKAKEFDS 332
P + AE E + D+ + +P +T+++EL +Y R E+ + AK
Sbjct: 15 PVQITAEQVLKEAREREDS--RILRPPKQKITDSDELAEYRLRRRKEFEDQIRGAKTNSQ 72
Query: 333 KIIGFETAIRRPYFHVKPLSVTE--LEN--------WHNYLDFIERDGDFNKVVKLYERC 382
+ + H + SV E LE+ W Y +F R+ N +++R
Sbjct: 73 VWVRYADWEESQKDHDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRA 132
Query: 383 LIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 442
+ ++W +Y+ E G++D A R + + L +F+ + +I+
Sbjct: 133 VKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPDQ--QAWLCFIKFELRYNEIE 190
Query: 443 GARAAYQ---LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL 499
+R+ Y+ L H + S + I++A E + + A +YE+AI + K E +
Sbjct: 191 RSRSIYERFVLCHPKAS-----SFIRYAKFEMKNSQVSLARIVYERAIEMLKDVE--EEA 243
Query: 500 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP--LLEALIHFESIQSSPKQID 555
M++ ++ F L + E+AR + +LDH+ + L + + FE + + ID
Sbjct: 244 EMIFVAFAEFEELC-KEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNKEGID 300
>UNIPROTKB|F8VZM2 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3 EMBL:AC010206
IPI:IPI01021874 ProteinModelPortal:F8VZM2 SMR:F8VZM2
Ensembl:ENST00000550322 ArrayExpress:F8VZM2 Bgee:F8VZM2
Uniprot:F8VZM2
Length = 156
Score = 123 (48.4 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 37/140 (26%), Positives = 70/140 (50%)
Query: 131 FPLCYGYWKKYADHEARVGS--MDK--VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDP 186
FPL W ++ E + +D+ V +++E+AV+ +IWL Y +++ G
Sbjct: 10 FPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDYICP-NIWLEYGQYSVGGIGQK 68
Query: 187 ---ETIRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQQEWSRVAMIYT---RILENPIQ 239
E +R +FER L+ VG LW+ Y E+E E +R+ +++ R L P+
Sbjct: 69 GGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVEAARLEKVHSLFRRQLAIPLY 128
Query: 240 QLDRYFSSFKEFAASRPLSE 259
++ F+ ++E++ P+ E
Sbjct: 129 DMEATFAEYEEWSED-PIPE 147
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 148 (57.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 108/503 (21%), Positives = 197/503 (39%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N + W + E + + I + R V++ L W +YA+ E R +
Sbjct: 79 IRKNRMQLANWIKYGKWEESIGE--IQRARSVFERALDVDHRSISIWLQYAEMEMRCKQI 136
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWD 211
+ V++RA+ + ++ WL Y P R++FER + + + W
Sbjct: 137 NHARNVFDRAITIMPRAMQFWLKYSYMEEVIENIPGA-RQIFERWIEWEPPEQA----WQ 191
Query: 212 KYIEYEYMQQEWSRVAMIYTRILENP---IQQLDRYFSSFKEFAASRPLSELRTXXXXXX 268
YI +E +E R +Y R L +Q +Y + F+E + + R
Sbjct: 192 TYINFELRYKEIDRARSVYQRFLHVHGINVQNWIKY-AKFEE--RNGYIGNARAAYEKAM 248
Query: 269 XXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK 328
+ET A EE Q + E+ GL EE++K
Sbjct: 249 EYFGEEDI-NETVLVAFALFEERQKEH-ERARGIFKYGLDNLPSNRT-----EEIFKHYT 301
Query: 329 EFDSKI---IGFETAI--RRPYFHVKPLSVT--ELENWHNYLDFIERDG-DFNKVVKLYE 380
+ + K +G E I +R + K + + W +YL +E + D +V +YE
Sbjct: 302 QHEKKFGERVGIEDVIISKRKTQYEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVYE 361
Query: 381 RCL--IACANY---PEYWIRYV-LCMEASGSMDLAHNALARATHVF---VKRLP------ 425
R + I +Y YW RY+ L + + +L RA V+ + +P
Sbjct: 362 RAIANIPPHSYFQEKRYWRRYIYLWINYALYEELVAKDFDRARQVYKACIDIIPHKTFTF 421
Query: 426 -EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANMERRLGNLEDAFSLY 483
++ + A F+ + D++ AR + + L A I ++E +L + LY
Sbjct: 422 AKVWIMFAHFEIRQLDLNAARKIMGVAIGKCPKDKLFRAYI---DLELQLREFDRCRKLY 478
Query: 484 EQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP--LLEAL 541
E+ + E E SQT + +A+ L + +++R + ++ L P L +A
Sbjct: 479 EKFL--ESSPESSQTW-IKFAELETLLG----DTDRSRAVFTIAVQQPALDMPELLWKAY 531
Query: 542 IHFE-SIQSSPKQIDFLEQLVDK 563
I FE + + K D E L+ +
Sbjct: 532 IDFEIACEEHEKARDLYETLLQR 554
>ASPGD|ASPL0000071333 [details] [associations]
symbol:ntfA species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0005635 "nuclear envelope"
evidence=IEA] [GO:0008536 "Ran GTPase binding" evidence=IEA]
[GO:0006606 "protein import into nucleus" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0005737 GO:GO:0015031
EMBL:BN001303 EMBL:AACD01000084 InterPro:IPR018222 PROSITE:PS50177
eggNOG:NOG286483 HOGENOM:HOG000197024 OMA:MTFEGVQ EMBL:AY038983
RefSeq:XP_662546.1 ProteinModelPortal:Q96VN3 SMR:Q96VN3
STRING:Q96VN3 EnsemblFungi:CADANIAT00005455 GeneID:2872742
KEGG:ani:AN4942.2 OrthoDB:EOG4HHSBX Uniprot:Q96VN3
Length = 125
Score = 119 (46.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 34/120 (28%), Positives = 60/120 (50%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIE 782
+ FV YYQ + Y D SM+ + + + + +++ + SL F ++
Sbjct: 7 IAQQFVTFYYQTFDGNRAGLAPLYRD-HSMLTFETSAIQGVAGIIE---KLTSLPFQKVQ 62
Query: 783 --IKTINSLGSW-NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKG-YFVLNDIFHFL 838
+ T+++ S +GG+LV+V+G++ E + QTF L P G YFVLND+F +
Sbjct: 63 HQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLI 122
>TAIR|locus:2007973 [details] [associations]
symbol:CSTF77 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031123 "RNA 3'-end processing"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF05843 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00386 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0045892 GO:GO:0003729 GO:GO:0006397 Gene3D:1.25.40.10
eggNOG:COG5107 KO:K14408 GO:GO:0031123 UniGene:At.27878
UniGene:At.28561 EMBL:BT002320 IPI:IPI00548656 RefSeq:NP_173218.2
SMR:Q8GUP1 IntAct:Q8GUP1 STRING:Q8GUP1 EnsemblPlants:AT1G17760.1
GeneID:838354 KEGG:ath:AT1G17760 TAIR:At1g17760
HOGENOM:HOG000030800 InParanoid:Q8GUP1 OMA:FEQTYGD
ProtClustDB:CLSN2690404 Genevestigator:Q8GUP1 Uniprot:Q8GUP1
Length = 734
Score = 137 (53.3 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 41/166 (24%), Positives = 76/166 (45%)
Query: 105 LLEETEKLAQ----DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160
++EE E LA+ I + +Y+ L+ +P +WK+Y + + V + D +++ R
Sbjct: 6 IVEEAEALAKRALHSPIAQATPIYEQLLSLYPTSARFWKQYVEAQMAVNNDDATKQIFSR 65
Query: 161 AVQGVTYSVDIWLHYCIFAINTY------GDPETIRRLFERGLAYVGTDYLSFPLWDKYI 214
+ V +W Y F Y G ET + FE L Y+GTD S P+W +YI
Sbjct: 66 CLL-TCLQVPLWQCYIRFIRKVYDKKGAEGQEETTKA-FEFMLNYIGTDIASGPIWTEYI 123
Query: 215 EYEY------MQQEWSR-VAM--IYTRILENPIQQLDRYFSSFKEF 251
+ + ++ R A+ +Y R + P +++ + ++ F
Sbjct: 124 AFLKSLPALNLNEDLHRKTALRKVYHRAILTPTHHVEQLWKDYENF 169
Score = 55 (24.4 bits), Expect = 9.2e-06, Sum P(2) = 9.2e-06
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 362 YLDFIERDGDFNKVVKLYERCL--IACANYPEYWIRYVLCMEASGSMDLA 409
Y DF+ R D + L+ER L + + E W R++ + G DLA
Sbjct: 408 YADFLTRLNDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYG--DLA 455
Score = 45 (20.9 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 29/132 (21%), Positives = 56/132 (42%)
Query: 362 YLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV 421
+ + E G KLYE L A N + I+Y+ + + ++ A A
Sbjct: 306 FAEMEESRGAIQSAKKLYENILGASTNSLAH-IQYLRFLRRAEGVEAARKYFLDA----- 359
Query: 422 KRLPEI--HLFAARFKEQNGDIDGA-RAAYQLVHTETSPGLLEA--IIKHANMERRLGNL 476
++ P H++ A F ID + A+ + + E I+K+A+ RL +
Sbjct: 360 RKSPSCTYHVYIA-FATMAFCIDKEPKVAHNIFEEGLKLYMSEPVYILKYADFLTRLNDD 418
Query: 477 EDAFSLYEQAIA 488
+ +L+E+A++
Sbjct: 419 RNIRALFERALS 430
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 552 KQIDFLEQLVD-KFLMSNSDSP-STANAAEREELSCVFLEFLGLFGDAQLIKKAEDR 606
K DFL +L D + + + + ST + E+ F++F +GD I K E R
Sbjct: 407 KYADFLTRLNDDRNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDLASILKVEQR 463
Score = 43 (20.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 357 ENWHNYLDFIERDGDFNKVVKLYER 381
E W ++ F + GD ++K+ +R
Sbjct: 439 EVWKRFIQFEQTYGDLASILKVEQR 463
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 141 (54.7 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 97/447 (21%), Positives = 183/447 (40%)
Query: 138 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGL 197
W KYAD E + S+++ V++RAV + +W + I G+ R++ ER +
Sbjct: 94 WVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKF-IHMEEKLGNIAGARQILERWI 152
Query: 198 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR-ILENPIQQLDRYFSSFKEFAASRP 256
+ D + W +I++E E IY R +L +P ++ Y + +F
Sbjct: 153 -HCSPDQQA---WLCFIKFELKYNEIECARSIYERFVLCHP--KVSAYIR-YAKFEMKHG 205
Query: 257 LSELRTXXXXXXXXXXXXXXPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EK 315
EL +E A EE A +Q K G AE L K
Sbjct: 206 QVELAMKVFERAKKELADDEEAEILFVAFAEFEEQYKFALDQIPK----G--RAENLYSK 259
Query: 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 375
++A ++ K + + IIG PL+ ++W +++ E G+ +++
Sbjct: 260 FVAFEKQNGDK-EGIEDAIIGKRRCQYEDEVRKNPLNY---DSWFDFVRLEETVGNKDRI 315
Query: 376 VKLYERCLIAC----ANYPEYWIRYV-LCMEASGSMDLAHNALARATHVF---VKRLP-- 425
++YER + A YW RY+ L + + ++ + V+ +K +P
Sbjct: 316 REIYERAVANVPPPEAQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHS 375
Query: 426 -----EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK-HANMERRLGNLEDA 479
+I L AA+ + + ++ GAR Q++ + I K + +E +L N++
Sbjct: 376 KFSFAKIWLLAAQHEIRQLNLTGAR---QILGNAIGKAPKDKIFKKYIEIELQLRNIDRC 432
Query: 480 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP--L 537
LYE+ + G ++ + +Y+ F + E+ R I ++ L P L
Sbjct: 433 RKLYERYLEWSPGNCYA------WRKYAEF-EMSLAETERTRAIFELAISQPALDMPELL 485
Query: 538 LEALIHFESIQSSPKQIDFL-EQLVDK 563
+ I FE + ++ L E+L+D+
Sbjct: 486 WKTYIDFEISEGELERTRALYERLLDR 512
Score = 123 (48.4 bits), Expect = 0.00087, P = 0.00087
Identities = 40/159 (25%), Positives = 75/159 (47%)
Query: 97 SDFS-AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 155
S FS A LL ++ Q N+ R++ + + P +KKY + E ++ ++D+
Sbjct: 375 SKFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGKAPKDK-IFKKYIEIELQLRNIDRCR 433
Query: 156 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 215
++YER ++ + W Y F ++ + E R +FE ++ D LW YI+
Sbjct: 434 KLYERYLEWSPGNCYAWRKYAEFEMSL-AETERTRAIFELAISQPALDMPEL-LWKTYID 491
Query: 216 YEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAAS 254
+E + E R +Y R+L+ + + + F +F AS
Sbjct: 492 FEISEGELERTRALYERLLDRT--KHCKVWVDFAKFEAS 528
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 118 (46.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 37/154 (24%), Positives = 75/154 (48%)
Query: 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE--RAVQGVTYSVDI-- 171
NI R+V++ ++ P W Y + E R +D+ +Y + + V D+
Sbjct: 269 NIAGARQVFERWMEWQPEEQA-WHSYINFELRYKEVDRARTIYYFLNSPELVLVHPDVKN 327
Query: 172 WLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 231
W+ Y F +G R+++ER + + G +++ L+ + ++E Q+E+ RV +IY
Sbjct: 328 WIKYARFE-EKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYK 386
Query: 232 ----RILENPIQQLDRYFSSF-KEFAASRPLSEL 260
RI + Q+L + ++ F K+F R + ++
Sbjct: 387 YALDRISKQEAQELFKNYTIFEKKFGDRRGIEDI 420
Score = 75 (31.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 60/277 (21%), Positives = 112/277 (40%)
Query: 359 WHNYLDFIERDG-DFNKVVKLYERCLIACAN----YPEYWIRYVLCMEASGSMDLAHNAL 413
W NY + E + D + ++Y+ L + + + W+ Y ++ ++ + L
Sbjct: 486 WVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQKNLPVSVSLL 545
Query: 414 ARATHVFVKRLPEIHLFAA--RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471
+ + + P+ LF + Q + D R Y+ E P + IK A +E
Sbjct: 546 GTS----IGKCPKNKLFKGYIELELQLREFDRCRKLYEKF-LEFGPENCTSWIKFAELET 600
Query: 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLP-MLYAQYSRFLHLVSRNAEKARQILVDSLDH 530
LG++E A ++YE AI+ + +P +L+ Y F + E+ R + L
Sbjct: 601 ILGDIERARAIYELAIS-----QPRLDMPEVLWKSYIDF-EIEQEETERTRNLYRRLLQR 654
Query: 531 VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF 590
Q K I F + S ++ L + + +N + N E+EE + LE
Sbjct: 655 TQHVK----VWISFAQFELSSRKEGSLAKCRQIYEEANK---TMRNCEEKEE-RLMLLES 706
Query: 591 LGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAED 627
F D ++R +L +P + + RK A+D
Sbjct: 707 WRSFEDEFGTVSDKERVDKL-MPEK-VKKRRKVQADD 741
>UNIPROTKB|F1N0I9 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 EMBL:DAAA02045494 IPI:IPI00842907
Ensembl:ENSBTAT00000045157 OMA:PYSMSEP Uniprot:F1N0I9
Length = 655
Score = 112 (44.5 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 37/168 (22%), Positives = 82/168 (48%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVGS 150
++A + + + A ++ K+ +I+ +++ L E L W +Y+ + + ++
Sbjct: 1 LQAEAPRLAEYQAYIDFEMKIGDP--ARIQLIFERALVENCLVPDLWIRYSQYLDRQLKV 58
Query: 151 MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG-DPETIRRLFERGLA--YV-GTDYLS 206
D V+ + RAV+ ++V +W Y + A+ +G + I FE+ L+ ++ TDY+
Sbjct: 59 KDLVLSAHSRAVRNCPWTVALWSRY-LLALERHGVEHRVISVTFEKALSAGFIQATDYVE 117
Query: 207 FPLWDKYIEY-----EYMQ---QEWSRVAMIYTRILENPIQQLDRYFS 246
+W Y++Y ++ Q +E + + R LE Q+++ FS
Sbjct: 118 --IWQAYLDYLRRRVDFKQDSSKELEELRSAFARALEYLKQEVEERFS 163
Score = 67 (28.6 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 21/75 (28%), Positives = 34/75 (45%)
Query: 1035 SVYVRNLPSTV--TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+V+V NLP + A + F+ G + NR D G CY VEF + + A
Sbjct: 403 TVFVSNLPYGLGEPAATLRPLFEACGDVVEVRPIFSNRGDFRGYCY--VEFREEAAALQA 460
Query: 1093 IQASPIQLAGRQVYI 1107
+Q + GR +++
Sbjct: 461 LQLDRQSVEGRPMFV 475
Score = 58 (25.5 bits), Expect = 8.8e-05, Sum P(3) = 8.8e-05
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQ 1090
E ++V LP + T E+EE + G +K D V NR G+ Y VE+E+ S
Sbjct: 497 EKHKLFVSGLPFSCTKEELEEICKAHGTVK-DIRLVTNRAGKPKGLAY--VEYENESQAS 553
Query: 1091 NAI 1093
A+
Sbjct: 554 QAV 556
Score = 56 (24.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARAT 417
W Y + GD K R + ++YPE+ +L ME + G+++ A+ + T
Sbjct: 209 WLEYYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGTLEDWDIAVQK-T 267
Query: 418 HVFVKRLPEIHLFAARFKE 436
+ R+ E + AA KE
Sbjct: 268 ETRLARVNEQRIKAAE-KE 285
Score = 45 (20.9 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 23/94 (24%), Positives = 32/94 (34%)
Query: 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA--RFKEQNGDIDGA 444
A + W+ Y A G AL RA PE H+ + G ++
Sbjct: 203 AKFANMWLEYYNLERAHGDTQHCRKALHRAVQC-TSDYPE-HVCEVLLTMERTEGTLEDW 260
Query: 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478
A Q T + + E IK A E L E+
Sbjct: 261 DIAVQKTETRLAR-VNEQRIKAAEKEAALAQQEE 293
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 97 (39.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 32/141 (22%), Positives = 64/141 (45%)
Query: 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 175
NI R+V++ +++ P G W Y E R ++ +++R V W+ +
Sbjct: 155 NIPGTRQVFERWMSWEP-DEGAWSAYIKLEKRYNEFERARAIFQRFTI-VHPEPRNWIKW 212
Query: 176 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 235
F YG + +R ++ + +G D++ L+ Y +E +E+ R IY L+
Sbjct: 213 ARFE-EEYGTSDLVREVYGLAVETLGEDFMDEKLFIAYARFETKLKEYERARAIYKYALD 271
Query: 236 N-PIQQ---LDRYFSSF-KEF 251
P + L + +++F K+F
Sbjct: 272 RLPRSKSITLHKAYTTFEKQF 292
Score = 94 (38.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 55/222 (24%), Positives = 98/222 (44%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCL--IACANYPEYWIRYV-LCMEASGSMDLAHNALAR 415
W ++ E+ GD +V +YER + I + +W RY+ L + + ++ + R
Sbjct: 324 WFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWEEMEAKDIDR 383
Query: 416 ATHVF---VKRLP-------EIHLFAARFKEQNGDIDGARAAY-QLVHTETSPGLLEAII 464
A V+ +K +P ++ L A+F+ + ++ AR Q + L I
Sbjct: 384 ARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQAIGMCPKDKLFRGYI 443
Query: 465 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL 524
++ER+L +LYE+ I E +SQ+ + YA+ R L + E+AR I
Sbjct: 444 ---DLERQLFEFVRCRTLYEKQI--EWNPSNSQSW-IQYAELERGLD----DTERARAIY 493
Query: 525 VDSLDHVQLSKPLL--EALIHFESIQSS-PKQIDFLEQLVDK 563
+D L P L +A I FE + ++ E+L+ K
Sbjct: 494 ELGIDQPTLDMPELVWKAYIDFEDDEGEYERERQLYERLLQK 535
Score = 83 (34.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 36/132 (27%), Positives = 60/132 (45%)
Query: 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM---------E 401
L + EL W Y+DF + +G++ + +LYER L+ ++ + WI Y E
Sbjct: 502 LDMPELV-WKAYIDFEDDEGEYERERQLYER-LLQKTDHVKVWINYARFEINVPDEEEEE 559
Query: 402 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE 461
++ A RA VF +R + KE+ ++ A A++ HT SP ++
Sbjct: 560 EEEERPISDEAKRRARAVF-ERAHRVFK-EKELKEERVELLNAWRAFE--HTHGSPEDID 615
Query: 462 AIIKHANMERRL 473
I K M RR+
Sbjct: 616 KIEKQ--MPRRV 625
>ZFIN|ZDB-GENE-040426-685 [details] [associations]
symbol:xab2 "XPA binding protein 2" species:7955
"Danio rerio" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-685 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
HOVERGEN:HBG024066 EMBL:BC056771 IPI:IPI00614939 UniGene:Dr.12501
ProteinModelPortal:Q6PGZ8 STRING:Q6PGZ8 InParanoid:Q6PGZ8
ArrayExpress:Q6PGZ8 Uniprot:Q6PGZ8
Length = 851
Score = 105 (42.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 59/292 (20%), Positives = 117/292 (40%)
Query: 282 AEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFD--SKIIGFET 339
A+ + E++ DA K + ++L EM + + +D S+I+ T
Sbjct: 397 AKFYEDNEQID-DARTIFEKATKVNYKQVDDLAAVWCEYGEMELRHENYDQASRILRKAT 455
Query: 340 AI---RRPYFHV-KPLS---VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY 392
AI + YF +P+ L+ W D E G F +Y+R + P+
Sbjct: 456 AIPARKAEYFDSSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQI 515
Query: 393 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH----LFAARFKEQNGD--IDGARA 446
I Y + +E + + A R +F + P +H + +F ++ G ++ AR
Sbjct: 516 IINYAMFLEEHNYFEESFKAYERGIALF--KWPNVHDIWNTYLTKFIDRYGGKKLERARD 573
Query: 447 AYQLVHTETSPGLLEAI-IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 505
++ + I + +A +E G A ++YE+A A + +E Q + +
Sbjct: 574 LFEQALDGCPAKYAKTIYLLYAKLEEEYGLARHAMAVYERATAAVEAEERHQMFNIYIKR 633
Query: 506 YSRFLHLVSRNA--EKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQID 555
+ + A +KA ++L D +H + + + F ++S +ID
Sbjct: 634 AAEIYGVTHTRAIYQKAIEVLPD--EHAR------DMCLRFADMESKLGEID 677
Score = 88 (36.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 41/185 (22%), Positives = 76/185 (41%)
Query: 78 VPAMSGEEDRLWN---------IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFL 128
+P++SG+ D L+ I++ N W +E + AQ +++ + +Y+ L
Sbjct: 1 MPSLSGKADVLFEDDDLPYEEEIIR-NPYSVKCWMRYIEHKQS-AQKSVLNM--IYERAL 56
Query: 129 AEFPLCYGYWKKYA-DHEARV-GSM------DKVVEVYERAVQGVTYSVDIWLHYCIFAI 180
E P Y W Y + +V G ++V +ERA+ + IW+ YC F +
Sbjct: 57 KELPGSYKLWYNYLRERRKQVKGKCITDPGYEEVNNCHERALVFMHKMPRIWIDYCQFMV 116
Query: 181 NTYGDPETIRRLFERGLAYVGTDYLSFP-LWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 239
+ + RR F+R L + P +W Y+ + +Y R L+ +
Sbjct: 117 SQCKITRS-RRTFDRALRAL--PITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPE 173
Query: 240 QLDRY 244
+ Y
Sbjct: 174 NAEEY 178
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 141 (54.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 99/472 (20%), Positives = 195/472 (41%)
Query: 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 175
N+ R+V++ ++ P W Y + E R +D+ +YER V V V W+ Y
Sbjct: 313 NVAGARQVFERWMEWQPEEQA-WHSYINFELRYKEVDRARTIYERFVL-VHPDVKNWIKY 370
Query: 176 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT---- 231
F + R+++ER + + G +++ L+ + ++E Q+E+ RV +IY
Sbjct: 371 ARFE-EKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALD 429
Query: 232 RILENPIQQLDRYFSSF-KEFAASRPLSELRTXXXXXXXXXXXXXXPSETGA---EVKAN 287
RI + Q+L + ++ F K+F R + ++ P A ++
Sbjct: 430 RISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLV 489
Query: 288 EEEVQPDATEQTSKPVSAGLTEAEEL---EKYIAVREEMYKKAKEFDSKIIGFETAIRRP 344
E + + +A + + A + +E ++YI + Y +E ++K + +
Sbjct: 490 ESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWIN-YALYEELEAKDPERTRQVYQA 548
Query: 345 YFHVKP-LSVTELENWHNYLDFIERDGDFNKVVKLYERCL-IACANYPEYWIRYVLCMEA 402
+ P T + W Y F R K + L R L + P+ + + + +E
Sbjct: 549 SLELIPHKKFTFAKMWILYAQFEIRQ----KNLSLARRALGTSIGKCPKNKL-FKVYIE- 602
Query: 403 SGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQN---GDIDGARAAYQLVHTETS 456
++L R ++ K L PE +F E GDID ARA Y+L ++
Sbjct: 603 ---LELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPR 659
Query: 457 PGLLEAIIK-HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 515
+ E + K + + E E +LY + + + +H + + +AQ+
Sbjct: 660 LDMPEVLWKSYIDFEIEQEETERTRNLYRRLL---QRTQHVKVW-ISFAQFE-LSSGKEG 714
Query: 516 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFL--EQLVDKFL 565
+ K RQI ++ ++ + E L+ ES +S ++ ++ VDK +
Sbjct: 715 SLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVDKLM 766
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 141 (54.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 99/472 (20%), Positives = 195/472 (41%)
Query: 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 175
N+ R+V++ ++ P W Y + E R +D+ +YER V V V W+ Y
Sbjct: 325 NVAGARQVFERWMEWQPEEQA-WHSYINFELRYKEVDRARTIYERFVL-VHPDVKNWIKY 382
Query: 176 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT---- 231
F + R+++ER + + G +++ L+ + ++E Q+E+ RV +IY
Sbjct: 383 ARFE-EKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALD 441
Query: 232 RILENPIQQLDRYFSSF-KEFAASRPLSELRTXXXXXXXXXXXXXXPSETGA---EVKAN 287
RI + Q+L + ++ F K+F R + ++ P A ++
Sbjct: 442 RISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLV 501
Query: 288 EEEVQPDATEQTSKPVSAGLTEAEEL---EKYIAVREEMYKKAKEFDSKIIGFETAIRRP 344
E + + +A + + A + +E ++YI + Y +E ++K + +
Sbjct: 502 ESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWIN-YALYEELEAKDPERTRQVYQA 560
Query: 345 YFHVKP-LSVTELENWHNYLDFIERDGDFNKVVKLYERCL-IACANYPEYWIRYVLCMEA 402
+ P T + W Y F R K + L R L + P+ + + + +E
Sbjct: 561 SLELIPHKKFTFAKMWILYAQFEIRQ----KNLSLARRALGTSIGKCPKNKL-FKVYIE- 614
Query: 403 SGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQN---GDIDGARAAYQLVHTETS 456
++L R ++ K L PE +F E GDID ARA Y+L ++
Sbjct: 615 ---LELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPR 671
Query: 457 PGLLEAIIK-HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 515
+ E + K + + E E +LY + + + +H + + +AQ+
Sbjct: 672 LDMPEVLWKSYIDFEIEQEETERTRNLYRRLL---QRTQHVKVW-ISFAQFE-LSSGKEG 726
Query: 516 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFL--EQLVDKFL 565
+ K RQI ++ ++ + E L+ ES +S ++ ++ VDK +
Sbjct: 727 SLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVDKLM 778
>GENEDB_PFALCIPARUM|PF14_0122 [details] [associations]
symbol:PF14_0122 "nuclear transport factor 2,
putative" species:5833 "Plasmodium falciparum" [GO:0006606 "protein
import into nucleus" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR002075 Pfam:PF02136 GO:GO:0005622
GO:GO:0006606 EMBL:AE014187 InterPro:IPR018222 PROSITE:PS50177
HOGENOM:HOG000197024 RefSeq:XP_001348295.2
ProteinModelPortal:Q8ILX1 PRIDE:Q8ILX1
EnsemblProtists:PF14_0122:mRNA GeneID:811703 KEGG:pfa:PF14_0122
EuPathDB:PlasmoDB:PF3D7_1412300 ProtClustDB:CLSZ2431947
Uniprot:Q8ILX1
Length = 125
Score = 114 (45.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/118 (25%), Positives = 60/118 (50%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLD-IHSLVISLNFTA 780
++G FV Y+Q+ + + Y D S M+ + D S +++ ++ L ++
Sbjct: 10 EIGKEFVNHYFQLFNSGRNELAALYKDIS-MMSFENDQCRGTSQIIERLNKLPPTVVHKC 68
Query: 781 IEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKG-YFVLNDIFHF 837
+ +++ + N G+L++V G + +E + KF ++F L P G YF+ ND+F F
Sbjct: 69 L---SLDIQPTPNNGILILVCGDIIIEEN-KPLKFCRSFHLFPLPSGGYFIFNDLFRF 122
>UNIPROTKB|Q8ILX1 [details] [associations]
symbol:PF14_0122 "Nuclear transport factor 2, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0006606 "protein import into
nucleus" evidence=ISS] InterPro:IPR002075 Pfam:PF02136
GO:GO:0005622 GO:GO:0006606 EMBL:AE014187 InterPro:IPR018222
PROSITE:PS50177 HOGENOM:HOG000197024 RefSeq:XP_001348295.2
ProteinModelPortal:Q8ILX1 PRIDE:Q8ILX1
EnsemblProtists:PF14_0122:mRNA GeneID:811703 KEGG:pfa:PF14_0122
EuPathDB:PlasmoDB:PF3D7_1412300 ProtClustDB:CLSZ2431947
Uniprot:Q8ILX1
Length = 125
Score = 114 (45.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 30/118 (25%), Positives = 60/118 (50%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLD-IHSLVISLNFTA 780
++G FV Y+Q+ + + Y D S M+ + D S +++ ++ L ++
Sbjct: 10 EIGKEFVNHYFQLFNSGRNELAALYKDIS-MMSFENDQCRGTSQIIERLNKLPPTVVHKC 68
Query: 781 IEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKG-YFVLNDIFHF 837
+ +++ + N G+L++V G + +E + KF ++F L P G YF+ ND+F F
Sbjct: 69 L---SLDIQPTPNNGILILVCGDIIIEEN-KPLKFCRSFHLFPLPSGGYFIFNDLFRF 122
>SGD|S000000811 [details] [associations]
symbol:NTF2 "Nuclear envelope protein" species:4932
"Saccharomyces cerevisiae" [GO:0006913 "nucleocytoplasmic
transport" evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=IMP] [GO:0008536 "Ran GTPase binding" evidence=IPI]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0016021 "integral
to membrane" evidence=ISM] [GO:0006810 "transport" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 SGD:S000000811 GO:GO:0016021
GO:GO:0005737 GO:GO:0005635 EMBL:BK006939 GO:GO:0006606 EMBL:U18778
InterPro:IPR018222 PROSITE:PS50177 eggNOG:NOG286483
GeneTree:ENSGT00510000047030 HOGENOM:HOG000197024 OMA:MTFEGVQ
OrthoDB:EOG4HHSBX EMBL:AY558448 EMBL:L22204 PIR:S50467
RefSeq:NP_010925.1 PDB:1GY7 PDB:1GYB PDBsum:1GY7 PDBsum:1GYB
ProteinModelPortal:P33331 SMR:P33331 DIP:DIP-2245N IntAct:P33331
MINT:MINT-525215 STRING:P33331 PaxDb:P33331 PeptideAtlas:P33331
EnsemblFungi:YER009W GeneID:856727 KEGG:sce:YER009W CYGD:YER009w
EvolutionaryTrace:P33331 NextBio:982832 Genevestigator:P33331
GermOnline:YER009W Uniprot:P33331
Length = 125
Score = 113 (44.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 34/112 (30%), Positives = 52/112 (46%)
Query: 727 FVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIE--IK 784
F YY + Y + SM+ + + A DI ++SL F ++ I
Sbjct: 12 FTQFYYNQFDTDRSQLGNLYRN-ESMLTFETSQLQGAK---DIVEKLVSLPFQKVQHRIT 67
Query: 785 TINSL-GSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 835
T+++ S NG VLVM++G + E ++F Q F L P Y+V NDIF
Sbjct: 68 TLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIF 119
>CGD|CAL0004777 [details] [associations]
symbol:PRP39 species:5476 "Candida albicans" [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=ISO]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA;ISO]
[GO:0000243 "commitment complex" evidence=IEA;ISO] [GO:0005685 "U1
snRNP" evidence=IEA;ISO] [GO:0030627 "pre-mRNA 5'-splice site
binding" evidence=IEA;ISO] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] InterPro:IPR003107 SMART:SM00386 CGD:CAL0004777
eggNOG:COG0457 EMBL:AACQ01000008 EMBL:AACQ01000007 GO:GO:0000243
GO:GO:0005685 GO:GO:0000395 KO:K13217 RefSeq:XP_722403.1
RefSeq:XP_722540.1 GeneID:3635832 GeneID:3635925
KEGG:cal:CaO19.1492 KEGG:cal:CaO19.9069 Uniprot:Q5ALT2
Length = 655
Score = 130 (50.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 29/106 (27%), Positives = 53/106 (50%)
Query: 161 AVQGVTYSVDIWLHYCIFAI---NTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 217
AV+ S+ +W Y + D E R +++ L + G D+ S P+WD IE+E
Sbjct: 2 AVENYPNSISLWTQYLSSILIHDKDKTDTELFRNAYKQALIHNGYDFNSHPIWDMAIEFE 61
Query: 218 YMQQEWSRVAM-IYTRILENPIQQLDRYFSSFKEFAASRPLSELRT 262
Q + S+ + +Y RI++ P+ Q +Y++ F E + ++ T
Sbjct: 62 TNQSKQSKELLELYLRIIKIPLYQYAQYYNQFSEINKQFEIQQIIT 107
Score = 56 (24.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 349 KPLSVTELENWHNYLDFIER--DGD-FNKVVKLYERCLIACANYPEYWIRYV 397
KP+ + L H +D + + D F V L++RCLI E W++Y+
Sbjct: 186 KPIWINYL---HQEIDTYAKKPNNDQFELVCTLFQRCLIPNCYDSEIWLKYL 234
>UNIPROTKB|Q5ALT2 [details] [associations]
symbol:PRP39 "Potential spliceosomal U1 snRNP protein
Prp39" species:237561 "Candida albicans SC5314" [GO:0000243
"commitment complex" evidence=ISO] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000395 "mRNA
5'-splice site recognition" evidence=ISO] [GO:0005685 "U1 snRNP"
evidence=ISO] [GO:0030627 "pre-mRNA 5'-splice site binding"
evidence=ISO] InterPro:IPR003107 SMART:SM00386 CGD:CAL0004777
eggNOG:COG0457 EMBL:AACQ01000008 EMBL:AACQ01000007 GO:GO:0000243
GO:GO:0005685 GO:GO:0000395 KO:K13217 RefSeq:XP_722403.1
RefSeq:XP_722540.1 GeneID:3635832 GeneID:3635925
KEGG:cal:CaO19.1492 KEGG:cal:CaO19.9069 Uniprot:Q5ALT2
Length = 655
Score = 130 (50.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 29/106 (27%), Positives = 53/106 (50%)
Query: 161 AVQGVTYSVDIWLHYCIFAI---NTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 217
AV+ S+ +W Y + D E R +++ L + G D+ S P+WD IE+E
Sbjct: 2 AVENYPNSISLWTQYLSSILIHDKDKTDTELFRNAYKQALIHNGYDFNSHPIWDMAIEFE 61
Query: 218 YMQQEWSRVAM-IYTRILENPIQQLDRYFSSFKEFAASRPLSELRT 262
Q + S+ + +Y RI++ P+ Q +Y++ F E + ++ T
Sbjct: 62 TNQSKQSKELLELYLRIIKIPLYQYAQYYNQFSEINKQFEIQQIIT 107
Score = 56 (24.8 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 349 KPLSVTELENWHNYLDFIER--DGD-FNKVVKLYERCLIACANYPEYWIRYV 397
KP+ + L H +D + + D F V L++RCLI E W++Y+
Sbjct: 186 KPIWINYL---HQEIDTYAKKPNNDQFELVCTLFQRCLIPNCYDSEIWLKYL 234
>UNIPROTKB|D6RBM9 [details] [associations]
symbol:G3BP2 "Ras GTPase-activating protein-binding protein
2" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR002075 Pfam:PF02136 GO:GO:0006810 GO:GO:0005622
InterPro:IPR018222 PROSITE:PS50177 HGNC:HGNC:30291 EMBL:AC104828
IPI:IPI01019015 ProteinModelPortal:D6RBM9 SMR:D6RBM9
Ensembl:ENST00000509561 ArrayExpress:D6RBM9 Bgee:D6RBM9
Uniprot:D6RBM9
Length = 78
Score = 111 (44.1 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+SLNF
Sbjct: 11 VGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF 70
Query: 779 TAIEIK 784
+ K
Sbjct: 71 SECHTK 76
>POMBASE|SPAC15F9.03c [details] [associations]
symbol:nxt2 "nuclear transport factor Nxt2"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IDA] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006606 "protein import
into nucleus" evidence=ISO] [GO:0008536 "Ran GTPase binding"
evidence=ISO] [GO:0031965 "nuclear membrane" evidence=ISO]
InterPro:IPR002075 Pfam:PF02136 PomBase:SPAC15F9.03c GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0031965 GO:GO:0006606
GO:GO:0008536 InterPro:IPR018222 PROSITE:PS50177 eggNOG:NOG286483
HOGENOM:HOG000197024 OMA:MTFEGVQ OrthoDB:EOG4HHSBX PIR:T38039
RefSeq:XP_001713065.1 ProteinModelPortal:Q10100 SMR:Q10100
STRING:Q10100 EnsemblFungi:SPAC15F9.03c.1 GeneID:2542783
KEGG:spo:SPAC15F9.03c NextBio:20803827 Uniprot:Q10100
Length = 123
Score = 107 (42.7 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 29/116 (25%), Positives = 56/116 (48%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIE 782
+ + F YYQ + Y + SM+ +G + ++++ ++SL F ++
Sbjct: 7 LATQFTQFYYQTFDSDRSQLSSLYRE-ESMLSFEGAQLQGTKAIVE---KLVSLPFQRVQ 62
Query: 783 --IKTINSLGSWN-GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 835
I T+++ + G V+VMV+G + E +++ Q F L Y+VLND+F
Sbjct: 63 HRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLF 118
>TAIR|locus:2099926 [details] [associations]
symbol:AT3G55540 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0006606 "protein import into nucleus"
evidence=ISS] [GO:0006810 "transport" evidence=IEA] [GO:0008565
"protein transporter activity" evidence=ISS] InterPro:IPR002075
Pfam:PF02136 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006810
GO:GO:0005622 InterPro:IPR018222 PROSITE:PS50177 EMBL:AL132975
IPI:IPI00537140 PIR:T47693 RefSeq:NP_191113.1 UniGene:At.53937
ProteinModelPortal:Q9M2S5 SMR:Q9M2S5 PaxDb:Q9M2S5 PRIDE:Q9M2S5
EnsemblPlants:AT3G55540.1 GeneID:824719 KEGG:ath:AT3G55540
TAIR:At3g55540 eggNOG:NOG258130 HOGENOM:HOG000153240
InParanoid:Q9M2S5 OMA:EALANCF PhylomeDB:Q9M2S5
ProtClustDB:CLSN2915780 Genevestigator:Q9M2S5 Uniprot:Q9M2S5
Length = 334
Score = 126 (49.4 bits), Expect = 0.00014, P = 0.00014
Identities = 43/154 (27%), Positives = 75/154 (48%)
Query: 727 FVGQYYQVLQQQPDLVHQ-FYSDASSMIRVDGDSTE-SASSMLDIHSLVISLNFTAIEIK 784
F+ Y+ L P++V +Y+D S M R D T S +S I ++S ++
Sbjct: 36 FLQSYFLNLGVYPEVVQMMWYADDSVMTRPGPDGTMMSFTSPEAIQEQIVSCDYEGASFD 95
Query: 785 TIN-SLGSWN----GGVLVMVSGSVKTKEFCRRRKFVQTFFLAP-QEKGYFVLNDIFHFL 838
++ + S N G +MV+G + K+ RR+FVQ+ +LA Q++ Y ++ND ++
Sbjct: 96 VMSFAAQSCNTSSEDGAFIMVTGFLTCKDKQVRRRFVQSLYLARRQDRSYAIVNDFLRYI 155
Query: 839 DEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGL 872
D P P + E+ V+ P+ E+ GL
Sbjct: 156 DSIPAL----PSVPESAGFVKVYYELPMREELGL 185
>TAIR|locus:2015914 [details] [associations]
symbol:NTF2A "AT1G27310" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISM;IDA] [GO:0006606 "protein import into nucleus"
evidence=IGI;ISS;IMP] [GO:0006810 "transport" evidence=IEA]
[GO:0008565 "protein transporter activity" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006913
"nucleocytoplasmic transport" evidence=IGI] [GO:0008536 "Ran GTPase
binding" evidence=IGI;IPI] [GO:0006605 "protein targeting"
evidence=RCA] [GO:0006869 "lipid transport" evidence=RCA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
[GO:0010351 "lithium ion transport" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR002075 Pfam:PF02136 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0005635 GO:GO:0006606
EMBL:AC004557 GO:GO:0008536 InterPro:IPR018222 PROSITE:PS50177
eggNOG:NOG286483 HOGENOM:HOG000197024 HSSP:P33331 OMA:CKHNITT
ProtClustDB:CLSN2679350 EMBL:AY042889 EMBL:AY072473 IPI:IPI00540337
PIR:H86398 RefSeq:NP_174051.1 UniGene:At.48239 UniGene:At.66864
ProteinModelPortal:Q9FZK4 SMR:Q9FZK4 STRING:Q9FZK4 PaxDb:Q9FZK4
PRIDE:Q9FZK4 EnsemblPlants:AT1G27310.1 GeneID:839620
KEGG:ath:AT1G27310 TAIR:At1g27310 InParanoid:Q9FZK4
PhylomeDB:Q9FZK4 Genevestigator:Q9FZK4 Uniprot:Q9FZK4
Length = 122
Score = 103 (41.3 bits), Expect = 0.00024, P = 0.00024
Identities = 35/117 (29%), Positives = 55/117 (47%)
Query: 723 VGSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 781
V FV YY +P LV Y + S M+ +G + + +++ + + L F
Sbjct: 6 VAKAFVEHYYSTFDANRPGLV-SLYQEGS-MLTFEGQKIQGSQNIV---AKLTGLPFQQC 60
Query: 782 E--IKTINSLGSWN-GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 835
+ I T++ S GG+LV VSG+++ KF Q F L + Y+V NDIF
Sbjct: 61 KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISNQGNYYVFNDIF 117
>CGD|CAL0005466 [details] [associations]
symbol:orf19.1531 species:5476 "Candida albicans" [GO:0003723
"RNA binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
CGD:CAL0005466 GO:GO:0005634 GO:GO:0005737 GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AACQ01000008 EMBL:AACQ01000007
eggNOG:COG5107 KO:K14408 RefSeq:XP_722436.1 RefSeq:XP_722575.1
ProteinModelPortal:Q5AM44 STRING:Q5AM44 GeneID:3635749
GeneID:3635890 KEGG:cal:CaO19.1531 KEGG:cal:CaO19.9106
Uniprot:Q5AM44
Length = 791
Score = 124 (48.7 bits), Expect = 0.00029, Sum P(4) = 0.00029
Identities = 38/176 (21%), Positives = 82/176 (46%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N D++ W L+++ + +DN ++R +D +L F W KY +E
Sbjct: 23 LELNPLDYNKWQKLIDQL--IIKDNQEQVRNTFDKYLKIFKFDGASWCKYIKYELNRDEK 80
Query: 152 DKVVEVYERAVQGVTYSVDI---WLHYC--IFAINTYGDPE--TIRRLFERGLAYVGTDY 204
+KV ++++ + G+T +V++ ++ Y + T G+ + + FE + VG D
Sbjct: 81 EKVENLFQQCL-GITDNVELCRLYVDYVRGVTDFVTGGEKARGVVVQAFEFAINKVGIDI 139
Query: 205 LSFPLWDKYIEYEY---------MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 251
S LW YI++ QQ+ + +Y + L P + ++ +S + ++
Sbjct: 140 TSESLWQDYIQFLQSWNPNANWEQQQKIDLIRKVYKKFLTIPTENIEVSWSQYTKW 195
Score = 52 (23.4 bits), Expect = 0.00029, Sum P(4) = 0.00029
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 1025 SLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV 1067
S +E E KS ++N+ T + E++ +N G KP+ FV
Sbjct: 707 SYSFNEEESKSA-IKNIEEQKTRVQQEQDQENQGINKPEESFV 748
Score = 49 (22.3 bits), Expect = 0.00029, Sum P(4) = 0.00029
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397
ELE N L+ + + ++ +Y++ A PE W +YV
Sbjct: 259 ELEK-ENKLELKDETVNDKRIQYVYKQATYALPFVPEIWFQYV 300
Score = 39 (18.8 bits), Expect = 0.00029, Sum P(4) = 0.00029
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT-----LPMLYAQYSRF 509
AN + +GNL++ L K E T L LY +Y F
Sbjct: 578 ANFTKEIGNLQEELKLTNLDPITRKKLEKQITNLKKFLKQLYKKYISF 625
>TAIR|locus:2200066 [details] [associations]
symbol:NTL "NTF2-like" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0006606 "protein import into nucleus" evidence=ISS] [GO:0006810
"transport" evidence=IEA] [GO:0008565 "protein transporter
activity" evidence=ISS] InterPro:IPR002075 Pfam:PF02136
EMBL:CP002684 GO:GO:0006810 GO:GO:0005622 InterPro:IPR018222
PROSITE:PS50177 IPI:IPI00938605 RefSeq:NP_001154326.1
UniGene:At.51573 ProteinModelPortal:F4I8X9 SMR:F4I8X9
EnsemblPlants:AT1G11570.2 GeneID:837700 KEGG:ath:AT1G11570
OMA:TEMERCH ArrayExpress:F4I8X9 Uniprot:F4I8X9
Length = 132
Score = 102 (41.0 bits), Expect = 0.00031, P = 0.00031
Identities = 34/121 (28%), Positives = 57/121 (47%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 781
+V S FV YY + + Y+ +S++ +G + + I + + L F
Sbjct: 11 EVASAFVNHYYHLFDNDRSSLSSLYNP-TSLLTFEGQTIYGVDN---ISNKLKQLPFDQC 66
Query: 782 E--IKTINS----LGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKG-YFVLNDI 834
I T++S + GG+LV VSGS++ +F QTF L P +G +FV N++
Sbjct: 67 HHLISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQNEM 126
Query: 835 F 835
F
Sbjct: 127 F 127
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 116 (45.9 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 1027 GLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI 1086
G +E + +SVYV N+ T E++ FQ G + + + G +A+VEF ++
Sbjct: 82 GKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKG--FAYVEFVEV 139
Query: 1087 SGVQNAIQASPIQLAGRQVYIEERRPN 1113
VQ A+Q + +L GRQ+ + +R N
Sbjct: 140 EAVQEALQLNESELHGRQLKVSPKRTN 166
Score = 42 (19.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 281 GAEV-KANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI 334
G E+ + + +V PD S +TE E+++ + EE +E +K+
Sbjct: 10 GGEIPEVGDTDV-PDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKV 63
>DICTYBASE|DDB_G0276425 [details] [associations]
symbol:nutf2 "nuclear transport factor 2"
species:44689 "Dictyostelium discoideum" [GO:0006810 "transport"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008536
"Ran GTPase binding" evidence=ISS] [GO:0006606 "protein import into
nucleus" evidence=ISS] [GO:0005635 "nuclear envelope" evidence=ISS]
[GO:0015031 "protein transport" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR002075 Pfam:PF02136
dictyBase:DDB_G0276425 GO:GO:0005737 GO:GO:0005635
GenomeReviews:CM000151_GR GO:GO:0006606 GO:GO:0008536
EMBL:AAFI02000015 InterPro:IPR018222 PROSITE:PS50177
eggNOG:NOG286483 OMA:MTFEGVQ RefSeq:XP_643125.1 HSSP:Q5CQI4
ProteinModelPortal:Q86HW7 IntAct:Q86HW7 STRING:Q86HW7
EnsemblProtists:DDB0233957 GeneID:8620530 KEGG:ddi:DDB_G0276425
Uniprot:Q86HW7
Length = 127
Score = 101 (40.6 bits), Expect = 0.00039, P = 0.00039
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIE 782
VG FV YY + + Q Y +++ +G A +++ H + + T +
Sbjct: 11 VGKQFVEHYYGIFDSNRAGLTQIYQQQTTLTW-EGKFLSGADAIVK-HIVELPFQQTNRK 68
Query: 783 IKTINSLGSWNGGVLVMVSGS-VKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 838
I +I+ ++ G+++ V+G+ + E + KFVQ F LA + ++ND F +
Sbjct: 69 INSIDCQQTYQPGIMITVTGTLIIDGEAKNQLKFVQVFNLASNNGSFLLINDFFRLV 125
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 116 (45.9 bits), Expect = 0.00046, P = 0.00046
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR-NRKDVVGVCYAFVEFEDISG 1088
E + KSVYV N+ TA EIE+ F G + V ++ +R +A+VEF + G
Sbjct: 74 EADAKSVYVGNVDYGATAEEIEQHFHGCGSVSR--VTIQCDRFSGHPKGFAYVEFTEKEG 131
Query: 1089 VQNAIQASPIQLAGRQVYIEERRPN 1113
+QNA+ + L GRQ+ ++ +R N
Sbjct: 132 MQNALAMTDSLLRGRQIKVDPKRTN 156
>FB|FBgn0033859 [details] [associations]
symbol:CG6197 species:7227 "Drosophila melanogaster"
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 EMBL:AE013599 GO:GO:0006911 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW GeneTree:ENSGT00550000075140
EMBL:BT133178 RefSeq:NP_610891.1 UniGene:Dm.606 SMR:A1Z9G2
IntAct:A1Z9G2 STRING:A1Z9G2 EnsemblMetazoa:FBtr0087623 GeneID:36514
KEGG:dme:Dmel_CG6197 UCSC:CG6197-RA FlyBase:FBgn0033859
InParanoid:A1Z9G2 OrthoDB:EOG42FQZD GenomeRNAi:36514 NextBio:798953
Uniprot:A1Z9G2
Length = 883
Score = 91 (37.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 35/124 (28%), Positives = 57/124 (45%)
Query: 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC-IFAINTYG----DP--ETI 189
+W +Y DH+A+ + + V VYERA++ + S IW +Y G DP E +
Sbjct: 35 HWLRYIDHKAKAPN-NGVNMVYERALKELPGSYKIWHNYLRTRRKQVRGKIPTDPMYEEV 93
Query: 190 RRLFERGLAYVGTDYLSFP-LWDKYIEYEYMQQEWSRVAMIYTRILEN-PIQQLDRYFSS 247
FER L ++ P +W Y + Q + +R ++ R L PI Q R +
Sbjct: 94 NSAFERALVFMH----KMPRIWMDYGAFMTSQCKITRTRHVFDRALRALPITQHGRIWPL 149
Query: 248 FKEF 251
+ +F
Sbjct: 150 YLQF 153
Score = 87 (35.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 33/146 (22%), Positives = 62/146 (42%)
Query: 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 415
L+ W Y D E G F +YER + P+ I Y + +E + A+ A +
Sbjct: 483 LKVWSMYADLEESFGTFKTCKAVYERIIDLKICTPQIIINYGMFLEEHNYFEEAYRAYEK 542
Query: 416 ATHVFVKRLPEIH----LFAARFKEQNGD--IDGARAAYQLVHTETSPGLLEAI-IKHAN 468
+F + P ++ + +F E+ G ++ AR ++ + P + + +A
Sbjct: 543 GISLF--KWPNVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAK 600
Query: 469 MERRLGNLEDAFSLYEQAIAIEKGKE 494
+E G A S+Y++A + K E
Sbjct: 601 LEEEHGLARHAMSVYDRATSAVKEDE 626
Score = 87 (35.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 42/162 (25%), Positives = 75/162 (46%)
Query: 337 FETAIRRPYFHVKPLSVTELEN----WHNYLD-FIERDGD--FNKVVKLYERCLIACA-N 388
FE A R + K +S+ + N W++YL F+ER G + L+E+CL C
Sbjct: 533 FEEAYRA---YEKGISLFKWPNVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPE 589
Query: 389 YPEYWIRYVLCMEASGSMDLAHNALA---RATHVFVKR---LPEIHLFAARFKEQNGDID 442
+ +Y+ Y+L + LA +A++ RAT VK ++F + E G +
Sbjct: 590 HAKYF--YLLYAKLEEEHGLARHAMSVYDRATSA-VKEDEMFDMYNIFIKKAAEIYG-LP 645
Query: 443 GARAAYQ-LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLY 483
R Y+ + + + +K A +E +LG ++ A ++Y
Sbjct: 646 RTREIYEKAIESLPEQNMRHMCVKFAELETKLGEVDRARAIY 687
>UNIPROTKB|F8VVK9 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3 EMBL:AC010206
IPI:IPI01022948 ProteinModelPortal:F8VVK9 SMR:F8VVK9
Ensembl:ENST00000550619 ArrayExpress:F8VVK9 Bgee:F8VVK9
Uniprot:F8VVK9
Length = 111
Score = 99 (39.9 bits), Expect = 0.00064, P = 0.00064
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 131 FPLCYGYWKKYADHEARVGS--MDK--VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDP 186
FPL W ++ E + +D+ V +++E+AV+ +IWL Y +++ G
Sbjct: 10 FPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDYICP-NIWLEYGQYSVGGIGQK 68
Query: 187 ---ETIRRLFERGLAYVGTDYLS-FPLWDKYIEYE 217
E +R +FER L+ VG LW+ Y E+E
Sbjct: 69 GGLEKVRSVFERALSSVGLHMTKGLALWEAYREFE 103
>WB|WBGene00004305 [details] [associations]
symbol:ran-4 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0060465 "pharynx development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] InterPro:IPR002075
Pfam:PF02136 GO:GO:0009792 GO:GO:0005737 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0015031 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0060465 InterPro:IPR018222
PROSITE:PS50177 EMBL:Z75546 eggNOG:NOG286483
GeneTree:ENSGT00510000047030 HOGENOM:HOG000197024 OMA:MTFEGVQ
PIR:T23921 RefSeq:NP_492322.1 ProteinModelPortal:Q21735 SMR:Q21735
IntAct:Q21735 STRING:Q21735 PaxDb:Q21735 EnsemblMetazoa:R05D11.3.1
EnsemblMetazoa:R05D11.3.2 GeneID:172648 KEGG:cel:CELE_R05D11.3
UCSC:R05D11.3.1 CTD:172648 WormBase:R05D11.3 InParanoid:Q21735
NextBio:876417 Uniprot:Q21735
Length = 133
Score = 99 (39.9 bits), Expect = 0.00064, P = 0.00064
Identities = 32/97 (32%), Positives = 48/97 (49%)
Query: 746 YSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIE--IKTINSLGSWNGGVLVMVSGS 803
Y +S + +G + +L + +L FT I+ I I+S ++G + VMV G
Sbjct: 38 YDPENSYMTFEGQQAKGRDGILQKFT---TLGFTKIQRAITVIDSQPLYDGSIQVMVLGQ 94
Query: 804 VKTKEFCRRRKFVQTFFLAPQEKG-YFVLNDIFHFLD 839
+KT E F Q F L P +G YF+ N+IF LD
Sbjct: 95 LKTDED-PINPFSQVFILRPNNQGSYFIGNEIFR-LD 129
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 115 (45.5 bits), Expect = 0.00081, P = 0.00081
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 1027 GLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI 1086
G +E + +SV+V N+ T E+++ FQ G + + G +A+VEF ++
Sbjct: 85 GKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKG--FAYVEFVEV 142
Query: 1087 SGVQNAIQASPIQLAGRQVYIEERRPN 1113
VQ A+Q + +L GRQ+ + ++R N
Sbjct: 143 EAVQEALQLNESELHGRQLKVLQKRTN 169
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1169 1033 0.00081 123 3 11 22 0.42 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 130
No. of states in DFA: 631 (67 KB)
Total size of DFA: 472 KB (2221 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 87.60u 1.44s 89.04t Elapsed: 00:00:07
Total cpu time: 87.63u 1.44s 89.07t Elapsed: 00:00:07
Start: Tue May 21 05:29:28 2013 End: Tue May 21 05:29:35 2013
WARNINGS ISSUED: 1