BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001060
(1169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
pdb|3Q90|B Chain B, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
Length = 140
Score = 77.0 bits (188), Expect = 5e-14, Method: Composition-based stats.
Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVISLNF 778
VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S NF
Sbjct: 12 VGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNF 71
Query: 779 TA--IEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFVLND 833
T +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V ND
Sbjct: 72 TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYVHND 130
Query: 834 IFHFLDE 840
IF + DE
Sbjct: 131 IFRYQDE 137
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 20/175 (11%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N D AW+ L+ E + D K R+ Y+ +A+FP +WK Y + E + +
Sbjct: 6 LEENPYDLDAWSILIREAQNQPID---KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNY 62
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD----PETIRRLFERGLAYVGTDYLSF 207
DKV ++++R + V + +D+W Y + T G E + + ++ L +G + +S+
Sbjct: 63 DKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121
Query: 208 PLWDKYIEY--------EYMQ-QEWSRVAMIYTRILENP---IQQLDRYFSSFKE 250
+W YI + Y + Q + V +Y R NP I+QL R ++ ++E
Sbjct: 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 176
>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
pdb|3UJM|B Chain B, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
Length = 120
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI- 781
VG FV QYY +L + P+ +H+FY+ SS I G+S + +IH+ + LNF
Sbjct: 6 VGREFVRQYYTLLNKAPNHLHRFYNHNSSYIH--GES-KLVVGQREIHNRIQQLNFNDCH 62
Query: 782 -EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHF 837
+I +++ + GV+V V+G + + + R+F QTF LA Q K Y+V NDIF +
Sbjct: 63 AKISQVDAQATLGNGVVVQVTGEL-SNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRY 119
>pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
pdb|1ZO2|B Chain B, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
Length = 129
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI 781
Q+G FV YYQ Q + Y S + D A +I + SLNF +
Sbjct: 13 QIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWEDTQFQGQA----NIVNKFNSLNFQRV 68
Query: 782 --EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ-EKGYFVLNDIFHF 837
EI ++ S N G +V V+G V+ + + KF Q F L P G+ + ND+F
Sbjct: 69 QFEITRVDCQPSPNNGSIVFVTGDVRIDD-GQPLKFSQVFNLMPSGNGGFMIFNDLFRL 126
>pdb|1GY7|A Chain A, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|B Chain B, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|C Chain C, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|D Chain D, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GYB|A Chain A, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|B Chain B, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|C Chain C, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|D Chain D, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
Length = 125
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 768 DIHSLVISLNFTAIE--IKTINSL-GSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824
DI ++SL F ++ I T+++ S G VLVM++G + E ++F Q F L P
Sbjct: 49 DIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPD 108
Query: 825 EKGYFVLNDIF 835
Y+V NDIF
Sbjct: 109 GNSYYVFNDIF 119
>pdb|1X4A|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor Sf2
Length = 109
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+YV NLP + +IE+ F +G I+ + ++NR+ G +AFVEFED ++A+
Sbjct: 25 IYVGNLPPDIRTKDIEDVFYKYGAIR--DIDLKNRRG--GPPFAFVEFEDPRDAEDAV 78
>pdb|2DK2|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein R (Hnrnp R)
Length = 97
Score = 38.1 bits (87), Expect = 0.032, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
Query: 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFED 1085
+VK ++VRNL +TVT +E+ F FG+++ V+ KD YAFV FED
Sbjct: 13 AKVKVLFVRNLATTVTEEILEKSFSEFGKLER----VKKLKD-----YAFVHFED 58
>pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
+VK ++VRNL +TVT +E+ F FG+++ V+ KD YAF+ F++ G
Sbjct: 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLER----VKKLKD-----YAFIHFDERDGAVK 60
Query: 1092 AIQ 1094
A++
Sbjct: 61 AME 63
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif (Rrm)
Of Tia-1
Length = 115
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
V+V +L +T +I+ F FGRI D V++ Y FV F + +NAIQ
Sbjct: 18 VFVGDLSPEITTEDIKAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76
Query: 1096 SPIQ-LAGRQVYIE--ERRP 1112
Q L GRQ+ R+P
Sbjct: 77 MGGQWLGGRQIRTNWATRKP 96
>pdb|2FHO|B Chain B, Nmr Solution Structure Of The Human Spliceosomal Protein
Complex P14-Sf3b155
Length = 87
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+Y+RNLP +TA E+ + F +G I+ + V N + G A+V +EDI +NA
Sbjct: 15 LYIRNLPYKITAEEMYDIFGKYGPIRQ--IRVGNTPETRGT--AYVVYEDIFDAKNA 67
>pdb|3LQV|A Chain A, Branch Recognition By Sf3b14
pdb|3LQV|B Chain B, Branch Recognition By Sf3b14
Length = 115
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093
+Y+RNLP +TA E+ + F +G I+ + V N + G A+V +EDI +NA+
Sbjct: 11 LYIRNLPYKITAEEMYDIFGKYGPIRQ--IRVGNTPETRGT--AYVVYEDIFDAKNAV 64
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 19/93 (20%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC---------YAF 1080
E + +S+YV N+ TA E+E F G + NR V +C +A+
Sbjct: 3 EADARSIYVGNVDYGATAEELEAHFHGCGSV--------NR--VTILCDKFSGHPKGFAY 52
Query: 1081 VEFEDISGVQNAIQASPIQLAGRQVYIEERRPN 1113
+EF D V+ ++ GRQ+ + +R N
Sbjct: 53 IEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 19/93 (20%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC---------YAF 1080
E + +S+YV N+ TA E+E F G + NR V +C +A+
Sbjct: 2 EADARSIYVGNVDYGATAEELEAHFHGCGSV--------NR--VTILCDKFSGHPKGFAY 51
Query: 1081 VEFEDISGVQNAIQASPIQLAGRQVYIEERRPN 1113
+EF D V+ ++ GRQ+ + +R N
Sbjct: 52 IEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 84
>pdb|3R27|A Chain A, Crystal Structure Of The First Rrm Domain Of Heterogeneous
Nuclear Ribonucleoprotein L (Hnrnp L)
pdb|3R27|B Chain B, Crystal Structure Of The First Rrm Domain Of Heterogeneous
Nuclear Ribonucleoprotein L (Hnrnp L)
Length = 100
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095
V++R L V ++ E Q FG I V + R+ A VEFED+ G NA+
Sbjct: 24 VHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQ-------ALVEFEDVLGACNAVNY 76
Query: 1096 SPIQLAGRQVYI 1107
+ A Q+YI
Sbjct: 77 A----ADNQIYI 84
>pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
Length = 125
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+Y+RNLP +TA E+ + F +G I+ + V N + G A+V +EDI +NA
Sbjct: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQ--IRVGNTPETRGT--AYVVYEDIFDAKNA 73
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
++Y+ LP T+T ++E+ F FGRI V V ++ + AF+ F+ S + AI
Sbjct: 90 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV-DQTTGLSRGVAFIRFDKRSEAEEAIT 148
Query: 1095 A 1095
+
Sbjct: 149 S 149
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
++Y+ LP T+T ++E+ F FGRI V V ++ + AF+ F+ S + AI
Sbjct: 90 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV-DQTTGLSRGVAFIRFDKRSEAEEAIT 148
Query: 1095 A 1095
+
Sbjct: 149 S 149
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQ 1094
++++ +LP T ++ F FG + VF+ +++ + C+ FV F++ Q AI+
Sbjct: 42 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFI-DKQTSLSKCFGFVSFDNPDSAQVAIK 100
Query: 1095 A 1095
A
Sbjct: 101 A 101
>pdb|2CPD|A Chain A, Solution Structure Of The Rna Recognition Motif Of Human
Apobec-1 Complementation Factor, Acf
Length = 99
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 17/77 (22%)
Query: 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV-FVRNRKDVVGVCYAFVEFEDISGVQN 1091
VK +YVRNL + + IE+EF N IKP V V+ +D YAFV F +
Sbjct: 15 VKILYVRNLMLSTSEEMIEKEFNN---IKPGAVERVKKIRD-----YAFVHFSNREDAVE 66
Query: 1092 AIQA--------SPIQL 1100
A++A SPI++
Sbjct: 67 AMKALNGKVLDGSPIEV 83
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 2/134 (1%)
Query: 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 416
E W+N + + GD+++ ++ Y++ L E W G D A +A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476
+ + + + +Q GD D A YQ E P EA N + G+
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKA-LELDPRSAEAWYNLGNAYYKQGDY 119
Query: 477 EDAFSLYEQAIAIE 490
++A Y++A+ ++
Sbjct: 120 DEAIEYYQKALELD 133
>pdb|2F9J|A Chain A, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
pdb|2F9J|B Chain B, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of The
Spliceosomal Protein P14 Bound To A Region Of Sf3b155
Length = 125
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 1038 VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNA 1092
+RNLP +TA E+ + F +G I+ + V N + G A+V +EDI +NA
Sbjct: 23 IRNLPYKITAEEMYDIFGKYGPIRQ--IRVGNTPETRGT--AYVVYEDIFDAKNA 73
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 372 FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431
F++ V Y R L N+ G +DLA + RA + P+ +
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPHFPDAYCNL 277
Query: 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI-- 489
A ++ G + A Y P +++ AN++R GN+E+A LY +A+ +
Sbjct: 278 ANALKEKGSVAEAEDCYNTA-LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
Query: 490 EKGKEHSQTLPMLYAQ 505
E HS +L Q
Sbjct: 337 EFAAAHSNLASVLQQQ 352
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC--YAFVEFEDISGVQNA 1092
++YV LP T+T E+E+ F +GRI + V V GV F+ F+ + A
Sbjct: 90 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILV---DQVTGVSRGVGFIRFDKRIEAEEA 146
Query: 1093 IQA 1095
I+
Sbjct: 147 IKG 149
>pdb|2GHP|A Chain A, Crystal Structure Of The N-Terminal 3 Rna Binding Domains Of
The Yeast Splicing Factor Prp24
pdb|2GHP|B Chain B, Crystal Structure Of The N-Terminal 3 Rna Binding Domains Of
The Yeast Splicing Factor Prp24
pdb|2GHP|C Chain C, Crystal Structure Of The N-Terminal 3 Rna Binding Domains Of
The Yeast Splicing Factor Prp24
pdb|2GHP|D Chain D, Crystal Structure Of The N-Terminal 3 Rna Binding Domains Of
The Yeast Splicing Factor Prp24
pdb|2GHP|E Chain E, Crystal Structure Of The N-Terminal 3 Rna Binding Domains Of
The Yeast Splicing Factor Prp24
pdb|2GHP|F Chain F, Crystal Structure Of The N-Terminal 3 Rna Binding Domains Of
The Yeast Splicing Factor Prp24
pdb|2GHP|G Chain G, Crystal Structure Of The N-Terminal 3 Rna Binding Domains Of
The Yeast Splicing Factor Prp24
pdb|2GHP|H Chain H, Crystal Structure Of The N-Terminal 3 Rna Binding Domains Of
The Yeast Splicing Factor Prp24
Length = 292
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 1032 EVKSVYVRNLPSTVTAFEI-EEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQ 1090
E + + +RNL + + + E F+ FG I+ + ++ C AF FE+ +
Sbjct: 209 EGREIXIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFXVFENKDSAE 268
Query: 1091 NAIQASPIQLAGRQVYI 1107
A+Q + L R++ +
Sbjct: 269 RALQXNRSLLGNREISV 285
>pdb|3H4C|A Chain A, Structure Of The C-Terminal Domain Of Transcription Factor
Iib From Trypanosoma Brucei
Length = 260
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 483 YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 532
+EQ I KGKE + +YA +S HL K + VD L +Q
Sbjct: 175 WEQGTHISKGKECDLGMEAIYANFSSKAHLEVTKVNKIMHLAVDVLPLIQ 224
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 19/89 (21%)
Query: 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVC---------YAFVEFE 1084
+SVYV N+ TA ++E F + G I NR + +C YA++EF
Sbjct: 37 RSVYVGNVDYGSTAQDLEAHFSSCGSI--------NR--ITILCDKFSGHPKGYAYIEFA 86
Query: 1085 DISGVQNAIQASPIQLAGRQVYIEERRPN 1113
+ + V A+ GR + + +R N
Sbjct: 87 ERNSVDAAVAMDETVFRGRTIKVLPKRTN 115
>pdb|2CQ4|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 23
Length = 114
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 1024 DSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEF 1083
D+L +E + ++V+ L + + ++E+ F G+++ D + +R A+VEF
Sbjct: 16 DNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVR-DVRIISDRNSRRSKGIAYVEF 74
Query: 1084 EDISGVQNAIQASPIQLAGRQVYIE 1108
+I V AI + +L G + ++
Sbjct: 75 CEIQSVPLAIGLTGQRLLGVPIIVQ 99
>pdb|2ARH|A Chain A, Crystal Structure Of A Protein Of Unknown Function Aq1966
From Aquifex Aeolicus Vf5
pdb|2ARH|B Chain B, Crystal Structure Of A Protein Of Unknown Function Aq1966
From Aquifex Aeolicus Vf5
pdb|2ARH|C Chain C, Crystal Structure Of A Protein Of Unknown Function Aq1966
From Aquifex Aeolicus Vf5
Length = 203
Score = 30.0 bits (66), Expect = 8.1, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 569 SDSPSTANAAER--EELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTS 618
++ P T A +R E L F EF+G D LIKK ++R+ FL H +S
Sbjct: 154 AEKPKTEEAKKRHLENLKKEFEEFIGKCEDEGLIKKVKERYN--FLEHEGSS 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,363,425
Number of Sequences: 62578
Number of extensions: 1202233
Number of successful extensions: 3087
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3048
Number of HSP's gapped (non-prelim): 54
length of query: 1169
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1059
effective length of database: 8,089,757
effective search space: 8567052663
effective search space used: 8567052663
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)