BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001060
(1169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1JPZ7|PRP39_DANRE Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2
Length = 752
Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 207/637 (32%), Positives = 317/637 (49%), Gaps = 41/637 (6%)
Query: 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYW 138
P + E +RL +V+ N DF+ W LL+ E+ +++++ R+ +DAF +P CYGYW
Sbjct: 146 PELPTEYERLSKVVEDNPEDFNGWVYLLQYVEQ--ENHLLGSRKAFDAFFLHYPYCYGYW 203
Query: 139 KKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF----AINTYGDPET-IRRLF 193
KKYAD E + G + EVY R +Q + SVD+WLHY F + G+ E+ IR +
Sbjct: 204 KKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLRENQDTSDGEAESRIRASY 263
Query: 194 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAA 253
E + GTD+ S LW+ YI +E Q + + V IY R+L P Q ++F FK+
Sbjct: 264 EHAVLACGTDFRSDRLWEAYIAWETEQGKLANVTAIYDRLLCIPTQLYSQHFQKFKDHVQ 323
Query: 254 SRPLSELRTAEEVDAAAVAVAAAPSETG---AEVKANEEEVQPDATEQTSKPVSAGLTEA 310
S + EE + V +A A +G AE +A EE+ P TE P +TE
Sbjct: 324 SNNPKHFLSEEEFVSLRVELANANKPSGDEDAETEAPGEEL-PPGTEDLPDPAKR-VTEI 381
Query: 311 EEL-EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD 369
E + K I R+EM+ + SK FE I+RPYFHVK L T+L NW YLDF +
Sbjct: 382 ENMRHKVIETRQEMFNHNEHEVSKRWAFEEGIKRPYFHVKALEKTQLNNWREYLDFELEN 441
Query: 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429
G +VV L+ERCLIACA Y E+WI+Y +E S S + + +A V + + P +HL
Sbjct: 442 GTPERVVVLFERCLIACALYEEFWIKYAKYLE-SYSTEAVRHIYKKACTVHLPKKPNVHL 500
Query: 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489
A F+EQ G ID AR+ + V + PGL ++ ++ERR GN+E+A +L + AI
Sbjct: 501 LWAAFEEQQGSIDEARSILKAVEV-SVPGLAMVRLRRVSLERRHGNMEEAEALLQDAIT- 558
Query: 490 EKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS-KPLLEALIHFESIQ 548
G+ S++ + +R L V ++ +A+++L+++++ + + K L L S
Sbjct: 559 -NGRNSSES-SFYSVKLARQLVKVQKSIGRAKKVLLEAVEKDETNPKLYLNLLELEYSGD 616
Query: 549 SSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRH 607
+ + + D+ L S+ S ++R+ ++FL FG D + A ++H
Sbjct: 617 VQQNEAEII-ACFDRALSSSMALESRITFSQRK------VDFLEDFGSDINTLMAAYEQH 669
Query: 608 ARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSSQNPWAAGYGV 667
RL S KR AE+ SE + + S A M ++ +
Sbjct: 670 QRLLAEQESF----KRKAEN--GSEEPDAKRQRTDDQSVASGQMMDMQANHAGYNYNNWY 723
Query: 668 QPQTWPPATQAQAQQWNQQAAYGAYSAYGSSYPTPQT 704
Q +W W Q YG Y+ Y YP P T
Sbjct: 724 QYNSW-----GSQNSWGQYGQYGQYNQY---YPPPPT 752
>sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3
Length = 669
Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 192/613 (31%), Positives = 296/613 (48%), Gaps = 48/613 (7%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYGYWKKYAD
Sbjct: 80 EYEKFWKTVENNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDRFFIHYPYCYGYWKKYAD 137
Query: 144 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLA 198
E R ++ EVY R +Q + SVD+W+HY F T GDPET IR FE +
Sbjct: 138 LEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVL 197
Query: 199 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 258
GTD+ S LW+ YI +E Q V IY RIL P Q +F FKE +
Sbjct: 198 AAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPR 257
Query: 259 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYI 317
+L T E+ +A+ +G + ++ P E + P +TE E + + I
Sbjct: 258 DLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDITDPAKL-ITEIENMRHRII 314
Query: 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVK 377
+ +EM+ + SK FE I+RPYFHVKPL +L+NW YL+F +G +VV
Sbjct: 315 EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVV 374
Query: 378 LYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437
L+ERC+I+CA Y E+WI+Y ME + S++ + +RA + + + P +H+ A F+EQ
Sbjct: 375 LFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQ 433
Query: 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 497
G+I+ AR + E GL ++ ++ERR GNLE+A L + AI K S
Sbjct: 434 QGNINEARNILKTF-EECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESS 492
Query: 498 TLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 556
YA + +R L + +N K+R++L+++++ + + L L+ E + +
Sbjct: 493 ----FYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEEN 548
Query: 557 LEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHR 615
+ DK + + ++R+ +EFL FG D + A D H L
Sbjct: 549 ILNCFDKAVHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYDEHQTLLKEQD 602
Query: 616 STSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMGAYPSS--------------QNPW 661
S KR AE+ K A + S Q + G ++ QNPW
Sbjct: 603 SL----KRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAVYNYSAWYQYNYQNPW 658
Query: 662 AAGYGVQPQTWPP 674
G Q +PP
Sbjct: 659 NYG-----QYYPP 666
>sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1
Length = 641
Score = 272 bits (695), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 190/558 (34%), Positives = 286/558 (51%), Gaps = 33/558 (5%)
Query: 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE 145
++ W V+A DF+ WT LL+ E+ ++++ R+ +DAFLA +P CYGYWKKYAD E
Sbjct: 57 EKYWKSVQAYPEDFNTWTYLLQYVEQ--ENHLFAARKAFDAFLAHYPYCYGYWKKYADLE 114
Query: 146 ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLAYV 200
+ ++ + EVY R +Q +T SVD+W+HY F T DPET +R FE +
Sbjct: 115 KKNNNILEADEVYRRGIQAITLSVDLWMHYLNFLKETLDPADPETSLTLRGTFEHAVVSA 174
Query: 201 GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSEL 260
G D+ S LW+ YI +E Q S V IY+R+L P Q +F FKE E
Sbjct: 175 GLDFRSDKLWEMYINWETEQGNLSGVTSIYSRLLGIPTQFYSLHFQRFKEHIQGHLPREF 234
Query: 261 RTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYIAV 319
T+E+ +A+ G + P E+ P TE E + + I V
Sbjct: 235 LTSEKFIELRKELASMTLHGGTN------DDIPSGLEEIKDPAKRT-TEVENMRHRIIEV 287
Query: 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 379
+E++ + SKI FE I+RPYFHVKPL +L NW YL+F +G ++V L+
Sbjct: 288 HQEIFNLNEHEVSKIWNFEEEIKRPYFHVKPLEKAQLNNWKEYLEFELENGSNERIVILF 347
Query: 380 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 439
ERC+IACA Y E+WI+Y ME + S++ + RA HV + + P +HL A F+EQ G
Sbjct: 348 ERCVIACACYEEFWIKYAKYME-NHSVEGVRHVYNRACHVHLAKKPMVHLLWAAFEEQQG 406
Query: 440 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL 499
+++ AR + + T GL ++ N+ERR GN+++A L E+A+ K S
Sbjct: 407 NLEEARRILKNIETAIE-GLAMVRLRRVNLERRHGNVKEAEHLLEEAMNKTKTSSESS-- 463
Query: 500 PMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLE 558
YA + +R L V N KAR++L +++ + + L L+ E KQ + E
Sbjct: 464 --FYAIKLARHLFKVQANVVKARKVLSNAIQKDKENTKLYLNLLEME-YNCDIKQNE--E 518
Query: 559 QLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPHRST 617
++ F + S + A R + S +EFL FG D + + H +L L H+
Sbjct: 519 NILAAF---DKAIKSPMSIAMRVKFSQRKVEFLEDFGSDVNKLLDTYNEHQKL-LKHQ-- 572
Query: 618 SELRKRHAEDFLASERAK 635
++ KR AE+ L AK
Sbjct: 573 -DIVKRKAENGLEQPEAK 589
>sp|Q8K2Z2|PRP39_MOUSE Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3
Length = 665
Score = 263 bits (673), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 193/614 (31%), Positives = 300/614 (48%), Gaps = 52/614 (8%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
E ++ W V+ N DF+ W LL+ E+ +++++ R+ +D F +P CYGYWKKYAD
Sbjct: 78 EFEKFWKTVEMNPQDFTGWVYLLQYVEQ--ENHLMAARKAFDKFFVHYPYCYGYWKKYAD 135
Query: 144 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPE---TIRRLFERGLA 198
E R ++ + EVY R +Q + SVD+W+HY F T GD E TIR FE +
Sbjct: 136 LEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLEPGDQETNTTIRGTFEHAVL 195
Query: 199 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 258
GTD+ S LW+ YI +E Q V +Y RIL P Q +F FKE +
Sbjct: 196 AAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSHHFQRFKEHVQNNLPR 255
Query: 259 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYI 317
+L T E+ +A+ +G + ++ P E S + +TE E + + I
Sbjct: 256 DLLTGEQFIQLRRELASVNGHSGDDGPPGDD--LPSGIEDISP--AKLITEIENMRHRII 311
Query: 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFIERDGDFNKVV 376
+ +EM+ + SK FE I+RPYFHVKPL + +NW YL+F +G +VV
Sbjct: 312 EIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQPKKNWKEYLEFEIENGTHERVV 371
Query: 377 KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436
L+ERC+I+CA Y E+WI+Y ME + S++ + +RA V + + P H+ A F+E
Sbjct: 372 VLFERCVISCALYEEFWIKYAKYME-NHSIEGVRHVFSRACTVHLPKKPMAHMLWAAFEE 430
Query: 437 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 496
Q G+I+ AR + E GL ++ ++ERR GN+E+A L + AI K S
Sbjct: 431 QQGNINEARIILRTF-EECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAIKNAKSNNES 489
Query: 497 QTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQID 555
YA + +R L + +N K+R++L+++++ + + L L+ E + +
Sbjct: 490 S----FYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKENTKLYLNLLEMEYSCDLKQNEE 545
Query: 556 FLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPH 614
+ DK + + ++R+ +EFL FG D + A D H L
Sbjct: 546 NILNCFDKAIHGSLPIKMRITFSQRK------VEFLEDFGSDVNKLLNAYDEHQTLL--- 596
Query: 615 RSTSELRKRHAEDFLASERAKMAKSYSGAPSPAQSLMG-------AYPSS-------QNP 660
+ KR AE+ SE + K+++ S AQ + G AY S QNP
Sbjct: 597 -KEQDTLKRKAEN--GSEEPEEKKAHTEDLSSAQIIDGDLQANQAAYNYSAWYQYNYQNP 653
Query: 661 WAAGYGVQPQTWPP 674
W G Q +PP
Sbjct: 654 WNYG-----QYYPP 662
>sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp39 PE=3 SV=1
Length = 612
Score = 253 bits (645), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 158/479 (32%), Positives = 244/479 (50%), Gaps = 51/479 (10%)
Query: 92 VKANSSDFSAWTALLEETEKL--------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
+ N DF AW L+ +E L ++ I +R VYD FL ++PL +GYWKKYAD
Sbjct: 21 INKNPDDFDAWEGLVRASEHLEGGVGRNSSKQAINTLRSVYDRFLGKYPLLFGYWKKYAD 80
Query: 144 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203
E V + +YER + G+ +SVD+W +YC F + T GD +R LF +G VG D
Sbjct: 81 FEFFVAGAEASEHIYERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQGANMVGLD 140
Query: 204 YLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 263
+LS P WDKY+E+E Q+ V + R++ P+ Q RYF F + + S+P+ +L
Sbjct: 141 FLSHPFWDKYLEFEERQERPDNVFQLLERLIHIPLHQYARYFERFVQVSQSQPIQQL--- 197
Query: 264 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG----LTEAEELE----- 314
P + A ++A D T + +K VSAG E ELE
Sbjct: 198 ------------LPPDVLASIRA-------DVTREPAKVVSAGSKQITVERGELEIEREM 238
Query: 315 --KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF 372
+ + ++++K + +K FE+ I+RPYFHVK L +L NW YLDF E +GDF
Sbjct: 239 RARIYNIHLQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDFEEVEGDF 298
Query: 373 NKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVF--VKRLPEIHL 429
++ LYERCLI CA Y E+W RY M A ++ RA+ +F + R P I +
Sbjct: 299 QRICHLYERCLITCALYDEFWFRYARWMSAQPDHLNDVSIIYERASCIFASISR-PGIRV 357
Query: 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQA 486
A F+E G+I A+A YQ + T+ PG LEA++ +ERR +L +A ++
Sbjct: 358 QYALFEESQGNIASAKAIYQSILTQL-PGNLEAVLGWVGLERRNAPNYDLTNAHAVLRS- 415
Query: 487 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545
I +GK ++ +L + + + + + E AR + + + + + + + FE
Sbjct: 416 -IINEGKCNTGITEVLITEDIKLVWKIEGDIELARNMFLQNAPALLDCRHFWISFLRFE 473
>sp|Q7KRW8|PRP39_DROME Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646
PE=1 SV=1
Length = 1066
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE 145
D+ W VK +S+DF+ WT LL+ + + + R YD FL+ +P CYGYW+KYAD+E
Sbjct: 366 DKYWRAVKEDSTDFTGWTYLLQYVDN--ESDAEAAREAYDTFLSHYPYCYGYWRKYADYE 423
Query: 146 ARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPET-IRRLFERGLAYVGTDY 204
R G +V+ER ++ + SVD+W+HY + + +GD ET +R +ER + G ++
Sbjct: 424 KRKGIKANCYKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKACGLEF 483
Query: 205 LSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 264
S LWD YI +E + + RV IY R+L P Q + +F +F++ ++ E
Sbjct: 484 RSDKLWDAYIRWENESKRYHRVVQIYDRLLAIPTQGYNGHFDNFQDLINQHDVTITLANE 543
Query: 265 EV 266
EV
Sbjct: 544 EV 545
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 134/258 (51%), Gaps = 13/258 (5%)
Query: 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN 373
++ I+ R +++K + FE I+RPYFHVKPL +L+NW +YLDF GD
Sbjct: 663 DRAISARRKVHKLTVSAVTARWSFEEGIKRPYFHVKPLERAQLKNWKDYLDFEIEKGDRE 722
Query: 374 KVVKLYERCLIACANYPEYWIRYVLCMEA----SGSMDLAHNALARATHVFVKRLPEIHL 429
+V+ L+ERCLIACA Y E+W++ + +E+ SG +DL + RA + P +HL
Sbjct: 723 RVLVLFERCLIACALYDEFWLKMLRYLESLEDQSGVVDLVRDVYRRACRIHHPDKPSLHL 782
Query: 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489
A F+E + D A Q + + P LL+ + N+ERR G L+ LY+ I
Sbjct: 783 MWAAFEECQMNFDDAAEILQRI-DQRCPNLLQLSYRRINVERRRGALDKCRELYKHYIES 841
Query: 490 EKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549
K K + +L + YA RFL+ + + + L +L+ + + AL +
Sbjct: 842 TKNKGIAGSLAIKYA---RFLNKICHDLDAGLAALQQALERDPANTRV--ALQMIDLCLQ 896
Query: 550 SPKQIDFLE--QLVDKFL 565
PK +D E +++DKF+
Sbjct: 897 RPK-VDEQEVVEIMDKFM 913
>sp|P39682|PRP39_YEAST Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1
Length = 629
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 124/286 (43%), Gaps = 65/286 (22%)
Query: 128 LAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC-IFAINTYGDP 186
L ++PL +G+WK++A E ++ + K + V +V+ S+++W Y + +N +
Sbjct: 81 LRKYPLLFGFWKRFATIEYQLFGLKKSIAVLATSVKWFPTSLELWCDYLNVLCVNNPNET 140
Query: 187 ETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFS 246
+ IR FE +G +LS P WDK+IE+E Q+ W V IY I+E P+ Q R+F+
Sbjct: 141 DFIRNNFEIAKDLIGKQFLSHPFWDKFIEFEVGQKNWHNVQRIYEYIIEVPLHQYARFFT 200
Query: 247 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG 306
S+K+F + L+T +D +E
Sbjct: 201 SYKKFLNEK---NLKTTRNIDIVLRKTQTTVNEIW------------------------- 232
Query: 307 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 366
+F+SK I++P+F++ + +LENW YL F+
Sbjct: 233 ----------------------QFESK-------IKQPFFNLGQVLNDDLENWSRYLKFV 263
Query: 367 -----ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407
D +F V+ +++RCLI C + W+ Y+ + D
Sbjct: 264 TDPSKSLDKEF--VMSVFDRCLIPCLYHENTWMMYIKWLTKKNISD 307
>sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nxt3 PE=1 SV=1
Length = 434
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 193/448 (43%), Gaps = 57/448 (12%)
Query: 722 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVD-GDSTESASSMLDIHSLVISLNF-- 778
++G FV +YY L ++P+ +H FY+ S++I D G+S +IH+ ++ L+F
Sbjct: 17 EIGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQN 76
Query: 779 TAIEIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFL 838
+ I ++SL S NGG+++ V G + K R KF QTFFLA Q GYFVLNDIF FL
Sbjct: 77 CKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSR-KFAQTFFLAEQPNGYFVLNDIFRFL 135
Query: 839 DEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGLAASDYVLEEEAREYVSSV----HIED 894
E+ + +P E E+ +A+ YV +++E++ S H +D
Sbjct: 136 REDVEEEEESPDAVE-------------KEKKDVASEPYVNGVQSQEHLPSAKEEGHYQD 182
Query: 895 DAT--DNYSLPEQQQDEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEPQ 952
A +N++ +E + +P E PV +V V + +
Sbjct: 183 PAATENNFATAALISNETDSLNQATLAVPEE-----------PVIQVTEASVPSFVSQQE 231
Query: 953 RKTYASILRVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVS- 1011
+ L + + + A+ + + +D P + SS +G +
Sbjct: 232 NQLQDEALTSNSKNADAIGASDANVATAPKSWADLIARNHPDVKSQASVSSTASTTGQTV 291
Query: 1012 -------SHMPESGFEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG 1064
+ P + + ++ L SV+V+N+P + ++ FG +K
Sbjct: 292 KGVNADQTQQPTAPYTQSNELLET------SVFVKNIPPETSDVSLKSAMSIFGPVK--A 343
Query: 1065 VFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPN-TGSTSRGGRR 1123
+ RK A+V+F + VQ A+ +Q+ + IEERR +G ++ G +
Sbjct: 344 IEFARRKGT-----AYVDFVNHECVQLALNKKTLQINNATLNIEERRRLFSGKFNKSGDK 398
Query: 1124 GRGRGSYQTDAPRGRFGGRGLGRGSAQD 1151
+ +Y R G RG G +++
Sbjct: 399 -KSNDNYNGMKRNFRKGNRGAFDGRSKE 425
>sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens
GN=G3BP1 PE=1 SV=1
Length = 466
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVIS 775
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 776 LNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 830
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 831 LNDIFHFLDE 840
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
>sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii
GN=G3BP1 PE=2 SV=1
Length = 466
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVIS 775
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 776 LNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 830
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 831 LNDIFHFLDE 840
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
>sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus
GN=G3BP PE=2 SV=1
Length = 465
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR----VDGDSTESASSMLDIHSLVIS 775
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 776 LNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 830
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 831 LNDIFHFLDE 840
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
>sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus
GN=G3bp1 PE=1 SV=1
Length = 465
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSM----IRVDGDSTESASSMLDIHSLVIS 775
P VG FV QYY +L Q PD++H+FY SS + +G ++ +IH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKVMS 67
Query: 776 LNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 830
NFT +I+ +++ + N GV+V V G + RR F+QTF LAP+ ++V
Sbjct: 68 QNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRR-FMQTFVLAPEGSVANKFYV 126
Query: 831 LNDIFHFLDE 840
NDIF + DE
Sbjct: 127 HNDIFRYQDE 136
>sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus
GN=G3bp2 PE=1 SV=2
Length = 482
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVIS 775
P VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLS 67
Query: 776 LNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 830
LNF+ +I+ +++ + + GV+V V G + + RKF+QTF LAP+ ++V
Sbjct: 68 LNFSECHTKIRHVDAHATLSDGVVVQVMGLL-SNSGQPERKFMQTFVLAPEGSVPNKFYV 126
Query: 831 LNDIFHFLDE 840
ND+F + DE
Sbjct: 127 HNDMFRYEDE 136
>sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii
GN=G3BP2 PE=2 SV=1
Length = 482
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVIS 775
P VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLS 67
Query: 776 LNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 830
LNF+ +I+ +++ + + GV+V V G + + RKF+QTF LAP+ ++V
Sbjct: 68 LNFSECHTKIRHVDAHATLSDGVVVQVMGLL-SNSGQPERKFMQTFVLAPEGSVPNKFYV 126
Query: 831 LNDIFHFLDE 840
ND+F + DE
Sbjct: 127 HNDMFRYEDE 136
>sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens
GN=G3BP2 PE=1 SV=2
Length = 482
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIR--VD--GDSTESASSMLDIHSLVIS 775
P VG FV QYY +L + P+ +H+FY SS + VD G E+ DIH V+S
Sbjct: 8 PLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLS 67
Query: 776 LNFTAI--EIKTINSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ---EKGYFV 830
LNF+ +I+ +++ + + GV+V V G + + RKF+QTF LAP+ ++V
Sbjct: 68 LNFSECHTKIRHVDAHATLSDGVVVQVMGLL-SNSGQPERKFMQTFVLAPEGSVPNKFYV 126
Query: 831 LNDIFHFLDE 840
ND+F + DE
Sbjct: 127 HNDMFRYEDE 136
>sp|Q5RDW9|CSTF3_PONAB Cleavage stimulation factor subunit 3 OS=Pongo abelii GN=CSTF3 PE=2
SV=1
Length = 717
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/552 (20%), Positives = 214/552 (38%), Gaps = 102/552 (18%)
Query: 95 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKV 154
N D AW+ L+ E + D K R+ Y+ +A+FP +WK Y + E + + DKV
Sbjct: 28 NPYDLDAWSTLIREAQNQPID---KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKV 84
Query: 155 VEVYERAVQGVTYSVDIWLHYCIFAINTYGD----PETIRRLFERGLAYVGTDYLSFPLW 210
++++R + V + +D+W Y + T G E + + ++ L +G + +S+ +W
Sbjct: 85 EKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIW 143
Query: 211 DKYIEY--------EYMQ-QEWSRVAMIYTRILENP---IQQLDRYFSSFKE---FAASR 255
YI + Y + Q + V +Y R NP I+QL R ++ ++E ++
Sbjct: 144 VDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAK 203
Query: 256 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315
+ E R+ + ++A VA G + N V P T Q ++ V
Sbjct: 204 KMIEDRSRDYMNARRVAKEYETVMKGLD--RNAPSVPPQNTPQEAQQV------------ 249
Query: 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 375
+M+KK +++ N L ++ +V
Sbjct: 250 ------DMWKKYIQWEK---------------------------SNPLRTEDQTLITKRV 276
Query: 376 VKLYERCLIACANYPEYWIRYVLCMEASGSM--------------DLAHNALARATHVFV 421
+ YE+CL+ ++P+ W +E S + D A N RA +
Sbjct: 277 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 336
Query: 422 KRLPEIHLFAARFKEQNGDIDGARAAYQ--LVHTETSPGLLEAIIKHANMERRLGNLEDA 479
K+ ++ A ++E + + Y L + P L+ I++ RR ++
Sbjct: 337 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV--YIQYMKFARRAEGIKSG 394
Query: 480 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 539
++++A +E ++T +Y + + S++ A +I L + E
Sbjct: 395 RMIFKKA------REDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPE 445
Query: 540 ALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQL 599
++ + S + + L ++ L S S P + E+ FL F GD
Sbjct: 446 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG-----EIWARFLAFESNIGDLAS 500
Query: 600 IKKAEDRHARLF 611
I K E R F
Sbjct: 501 ILKVEKRRFTAF 512
>sp|Q99LI7|CSTF3_MOUSE Cleavage stimulation factor subunit 3 OS=Mus musculus GN=Cstf3 PE=1
SV=1
Length = 717
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 120/584 (20%), Positives = 228/584 (39%), Gaps = 110/584 (18%)
Query: 65 SGAAAGQELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVY 124
SG AA ++ + + E +L + N D AW+ L+ E + D K R+ Y
Sbjct: 2 SGDAAAEQAAEYVPEKVKKAEKKL----EENPYDLDAWSILIREAQNQPID---KARKTY 54
Query: 125 DAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG 184
+ +A+FP +WK Y + E + + DKV ++++R + V + +D+W Y + T G
Sbjct: 55 ERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKG 113
Query: 185 D----PETIRRLFERGLAYVGTDYLSFPLWDKYIEY--------EYMQ-QEWSRVAMIYT 231
E + + ++ L +G + +S+ +W YI + Y + Q + V +Y
Sbjct: 114 KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 173
Query: 232 RILENP---IQQLDRYFSSFKE---FAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVK 285
R NP I+QL R ++ ++E ++ + E R+ + ++A VA G +
Sbjct: 174 RGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLD-- 231
Query: 286 ANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPY 345
N V P T Q ++ V +M+KK +++
Sbjct: 232 RNAPSVPPQNTPQEAQQV------------------DMWKKYIQWEK------------- 260
Query: 346 FHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGS 405
N L ++ +V+ YE+CL+ ++P+ W +E S
Sbjct: 261 --------------SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK 306
Query: 406 M--------------DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ-- 449
+ D A N RA +K+ ++ A ++E + + Y
Sbjct: 307 LLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 366
Query: 450 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509
L + P L+ I++ RR ++ ++++A +E ++T +Y +
Sbjct: 367 LAIEDIDPTLV--YIQYMKFARRAEGIKSGRMIFKKA------REDARTRHHVYVTAALM 418
Query: 510 LHLVSRNAEKARQILVDSLDHVQLSK--PLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567
+ S++ A +I + L K + E ++ + S + + L ++ L S
Sbjct: 419 EYYCSKDKSVAFKIF-----ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 473
Query: 568 NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLF 611
S P + E+ FL F GD I K E R F
Sbjct: 474 GSLPPEKSG-----EIWARFLAFESNIGDLASILKVEKRRFTAF 512
>sp|Q12996|CSTF3_HUMAN Cleavage stimulation factor subunit 3 OS=Homo sapiens GN=CSTF3 PE=1
SV=1
Length = 717
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 113/552 (20%), Positives = 214/552 (38%), Gaps = 102/552 (18%)
Query: 95 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKV 154
N D AW+ L+ E + D K R+ Y+ +A+FP +WK Y + E + + DKV
Sbjct: 28 NPYDLDAWSILIREAQNQPID---KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKV 84
Query: 155 VEVYERAVQGVTYSVDIWLHYCIFAINTYGD----PETIRRLFERGLAYVGTDYLSFPLW 210
++++R + V + +D+W Y + T G E + + ++ L +G + +S+ +W
Sbjct: 85 EKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIW 143
Query: 211 DKYIEY--------EYMQ-QEWSRVAMIYTRILENP---IQQLDRYFSSFKE---FAASR 255
YI + Y + Q + V +Y R NP I+QL R ++ ++E ++
Sbjct: 144 VDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAK 203
Query: 256 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315
+ E R+ + ++A VA G + N V P T Q ++ V
Sbjct: 204 KMIEDRSRDYMNARRVAKEYETVMKGLD--RNAPSVPPQNTPQEAQQV------------ 249
Query: 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 375
+M+KK +++ N L ++ +V
Sbjct: 250 ------DMWKKYIQWEK---------------------------SNPLRTEDQTLITKRV 276
Query: 376 VKLYERCLIACANYPEYWIRYVLCMEASGSM--------------DLAHNALARATHVFV 421
+ YE+CL+ ++P+ W +E S + D A N RA +
Sbjct: 277 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 336
Query: 422 KRLPEIHLFAARFKEQNGDIDGARAAYQ--LVHTETSPGLLEAIIKHANMERRLGNLEDA 479
K+ ++ A ++E + + Y L + P L+ I++ RR ++
Sbjct: 337 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV--YIQYMKFARRAEGIKSG 394
Query: 480 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 539
++++A +E ++T +Y + + S++ A +I L + E
Sbjct: 395 RMIFKKA------REDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPE 445
Query: 540 ALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQL 599
++ + S + + L ++ L S S P + E+ FL F GD
Sbjct: 446 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG-----EIWARFLAFESNIGDLAS 500
Query: 600 IKKAEDRHARLF 611
I K E R F
Sbjct: 501 ILKVEKRRFTAF 512
>sp|O14233|RNA14_SCHPO mRNA 3'-end-processing protein rna14 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rna14 PE=3 SV=1
Length = 733
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 21/230 (9%)
Query: 42 NGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSVPAMSGEED---RLWNIVKANSSD 98
+ N++ ++ EN +++ ES A V D +L + ++ N +D
Sbjct: 12 SSNIIKDSPKIKEQENTSTVN-ESDVLATSTTASSGVKRKRLPNDLVGQLRDKIQENPND 70
Query: 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158
S+W AL+EE + ++R Y+ L FP W Y E V ++
Sbjct: 71 ISSWYALVEEYGSKGKHE--ELRETYEQMLRPFPYVPRVWVDYISSELAFNDFHAVELLF 128
Query: 159 ERAVQGVTYSVDIWLHYC--IFAINTYGDPE---TIRRLFERGLAYVGTDYLSFPLWDKY 213
R + V SVD+W Y I IN G+ + TI + +E + +G D LS P+W ++
Sbjct: 129 SRCLVKVL-SVDLWTLYLSYIRRINPDGEGQSRSTITQAYEFVINTIGVDILSGPIWSEF 187
Query: 214 IEYEY---------MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAAS 254
+++ QQ+ V IY R + PI +++ + + F S
Sbjct: 188 VDFLRSGPANSTWEQQQKLDHVRRIYQRAITTPIHNIEKLWRDYDAFENS 237
>sp|P25991|SUF_DROME Protein suppressor of forked OS=Drosophila melanogaster GN=su(f)
PE=1 SV=2
Length = 765
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 114/573 (19%), Positives = 216/573 (37%), Gaps = 104/573 (18%)
Query: 91 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS 150
+V+ D +W+ ++ E + I ++R +Y++ + FP YWK Y + E R
Sbjct: 25 VVELRPYDIESWSVMIREAQTRP---IHEVRSLYESLVNVFPTTARYWKLYIEMEMRSRY 81
Query: 151 MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG----DPETIRRLFERGLAYVGTDYLS 206
++V ++++R + + ++D+W Y + T E + + ++ L +G D S
Sbjct: 82 YERVEKLFQRCLVKIL-NIDLWKLYLTYVKETKSGLSTHKEKMAQAYDFALEKIGMDLHS 140
Query: 207 FPLWDKYIEY--------EYMQ-QEWSRVAMIYTRILENPIQQLDRYFSSFKEF------ 251
F +W YI + Y + Q+ + V +Y + + PI +++ + + F
Sbjct: 141 FSIWQDYIYFLRGVEAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINP 200
Query: 252 AASRPLSELRTAEEVDAAAVAV--------------AAAPSETGAEVKANE--------E 289
S +S R+ + ++A VA A P+ T EVK E E
Sbjct: 201 IISEKMSLERSKDYMNARRVAKELEYHTKGLNRNLPAVPPTLTKEEVKQVELWKRFITYE 260
Query: 290 EVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEF--DSKIIGFETAIRRPYFH 347
+ P TE T+ + E+ + ++ +A +F S + E +R +
Sbjct: 261 KSNPLRTEDTALVTRRVMFATEQCLLVLTHHPAVWHQASQFLDTSARVLTEKGVRTSVEN 320
Query: 348 VKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407
+ P+ + N ++ + +W + V A D
Sbjct: 321 ISPILCVPVVNQIEWV-----------------------MAFAWWWAKDV--QAAKIFAD 355
Query: 408 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT---------ETSPG 458
N L R+ + + R ++ A F+E R Y+ VHT + P
Sbjct: 356 ECANILERSINGVLNRNALLYFAYADFEE-------GRLKYEKVHTMYNKLLQLPDIDPT 408
Query: 459 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 518
L+ +++ RR ++ A S++++A + + H L Y S++ E
Sbjct: 409 LV--YVQYMKFARRAEGIKSARSIFKKAREDVRSRYHIFVAAALMEYYC------SKDKE 460
Query: 519 KARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAA 578
A +I L S + I + S + L ++ L S SP +
Sbjct: 461 IAFRIFELGLKRFGGSPEYVMCYIDYLSHLNEDNNTRVL---FERVLSSGGLSPHKS--- 514
Query: 579 EREELSCVFLEFLGLFGDAQLIKKAEDRHARLF 611
E+ FLEF GD I K E R + +F
Sbjct: 515 --VEVWNRFLEFESNIGDLSSIVKVERRRSAVF 545
>sp|Q7S1Y0|RNA14_NEUCR mRNA 3'-end-processing protein rna-14 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rna-14 PE=3 SV=1
Length = 1167
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 22/172 (12%)
Query: 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158
+AW L++E K A+++I R+VY+ FLA FP W +Y D E + + + ++
Sbjct: 263 MNAWLELMKE--KRARNDIDGARQVYERFLAIFPQAADIWVEYLDLELSLNNFPQAEGIF 320
Query: 159 ERAVQGVTYSVDIWLHYC--IFAINTYGDP-----ETIRRLFERGLAYVGTDYLSFPLWD 211
+ + T +V++W Y I N D +T+ + +E + +G D S +W
Sbjct: 321 AKCLM-TTPNVNLWTRYLDYIRRRNDLNDSTGQARQTVSQAYEFVIDNIGLDKDSGKIWA 379
Query: 212 KYIEYEYM------------QQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 251
+YI++ QQ+ ++ Y R + PI ++ + + +F
Sbjct: 380 EYIQFIKFGPGTVGGSQWQDQQKMDQLRKAYQRAICVPISNVNTLWKEYDQF 431
>sp|Q5B3I8|RNA14_EMENI mRNA 3'-end-processing protein rna14 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rna14 PE=3 SV=2
Length = 1075
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV 157
D AW L+ E +++ I R VY+ FL FPL W YA E+ + + ++ ++
Sbjct: 255 DIPAWLELINEHR--SRNRIDSARDVYERFLKVFPLSAEMWVAYATMESELNELFRLEQI 312
Query: 158 YERAVQGVTYSVDIWLHYCIF-------AINTYGDP-ETIRRLFERGLAYVGTDYLSFPL 209
+ R + + +V +W Y + + +T G + I +E L ++G D S +
Sbjct: 313 FNRTLLTIP-AVQLWTVYLDYVRRRNPLSTDTTGQARKVISSAYELALQHIGMDKESGSI 371
Query: 210 WDKYIEYEYM------------QQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 251
W YI++ QQ+ + Y R + P+Q ++ + + +F
Sbjct: 372 WADYIQFIRSGPGNVGGSGWQDQQKMDLLRKAYQRAICVPMQAVNTLWKEYDQF 425
>sp|Q03776|PRP42_YEAST U1 small nuclear ribonucleoprotein component PRP42 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PRP42 PE=1
SV=1
Length = 544
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 122/287 (42%), Gaps = 36/287 (12%)
Query: 120 IRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVT-YSVDIWLHYCIF 178
IR Y + L EFP Y+ +A E ++G++ ++++R +Q S+ +W Y F
Sbjct: 56 IRCTYSSMLNEFPYLENYYIDFALLEYKLGNVSMSHKIFQRGLQAFNQRSLLLWTSYLKF 115
Query: 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAM------IYTR 232
N + + + +E YVG + S WD Y+E Q SR + +
Sbjct: 116 CNNVISHQKQLFKKYETAEEYVGLHFFSGEFWDLYLE-----QISSRCTSSKKYWNVLRK 170
Query: 233 ILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQ 292
ILE P+ ++++ + + R + +D ++ + E ++K ++
Sbjct: 171 ILEIPLHSFSKFYALWLQ----------RIDDIMDLKQLSQLTSKDELLKKLKI---DIN 217
Query: 293 PDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI-IGFETAIRRPYFHVKPL 351
+ + + E Y+ V+ ++ + F+SKI I + T+ +
Sbjct: 218 YSGRKGPYLQDAKKKLKKITKEMYMVVQYQVLEIYSIFESKIYINYYTSPETL------V 271
Query: 352 SVTELENWHNYLDF-IERDGDFNKVVKL-YERCLIACANYPEYWIRY 396
S E+E W YLD+ I D + L ++R L+ A+Y WI+Y
Sbjct: 272 SSDEIETWIKYLDYTITLQTD--SLTHLNFQRALLPLAHYDLVWIKY 316
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 139/340 (40%), Gaps = 62/340 (18%)
Query: 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 143
E +RL + N D++ L+ + + ++R FPL W ++
Sbjct: 98 EIERLEEQLSINGYDYNCHVELIRLLR--LEGELSRVRAARQKMSELFPLTEELWLEWLH 155
Query: 144 HEARVG--SMDK--VVEVYERAVQGVTYSVDIWL---HYCIFAINTYGDPETIRRLFERG 196
E + +D+ V E++ERAV+ +IWL Y + I G E +R +FER
Sbjct: 156 DEISMAMDGLDREHVYELFERAVKDYICP-NIWLEYGQYSVGGIGQKGGLEKVRSVFERA 214
Query: 197 LAYVGTDYLS-FPLWDKYIEYEYMQQEWSRVAMIYT---RILENPIQQLDRYFSSFKEFA 252
L+ VG +W+ Y E+E E +R+ +++ R L P+ +++ F+ ++E++
Sbjct: 215 LSSVGLHMTKGLAIWEAYREFESAIVEAARLEKVHSLFRRQLAIPLYEMEATFAEYEEWS 274
Query: 253 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 312
P+ E +V + + ++ + KP L +AE
Sbjct: 275 -EEPMPE------------SVLQSYQKALGQL-------------EKYKPYEEALLQAE- 307
Query: 313 LEKYIAVREEMYKKAKEFDSKI-------IGFETAIRRPYFHVKPLSVTELENWHNYLDF 365
A R Y+ +F+ KI + FE A+ V+ V +L W Y +
Sbjct: 308 -----APRLAEYQAYIDFEMKIGDPARIQLIFERAL------VENCLVPDL--WIRYSQY 354
Query: 366 IERDGDFNKVV-KLYERCLIACANYPEYWIRYVLCMEASG 404
++R +V ++ R + C W RY+L ME G
Sbjct: 355 LDRQLKVKDLVLSVHSRAVRNCPWTVALWSRYLLAMERHG 394
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 16/141 (11%)
Query: 119 KIRRVYDAFLAEFPLCYGYWKKYADHEAR-VGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177
+I+ +++ L E L W +Y+ + R + D V+ V+ RAV+ ++V +W Y +
Sbjct: 329 RIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHSRAVRNCPWTVALWSRY-L 387
Query: 178 FAINTYG-DPETIRRLFERGLA---YVGTDYLSFPLWDKYIEY-----EYMQ---QEWSR 225
A+ +G D +TI FE L+ TDY+ +W Y++Y ++ Q +E
Sbjct: 388 LAMERHGLDHQTISATFENALSAGFIQATDYVE--IWQVYLDYLRRRVDFRQDSSKELEE 445
Query: 226 VAMIYTRILENPIQQLDRYFS 246
+ ++TR LE Q+++ FS
Sbjct: 446 LRSMFTRALEYLQQEVEERFS 466
>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1
PE=3 SV=1
Length = 705
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/486 (20%), Positives = 200/486 (41%), Gaps = 69/486 (14%)
Query: 113 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172
+Q ++ + R V++ FL W KYA+ E + +++ +++RAV + +W
Sbjct: 87 SQKDLTRARSVFERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLW 146
Query: 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 232
Y F + G+ R +FER + + W+ Y+++E + + +I+ +
Sbjct: 147 FKYT-FMEDMLGNYPAARAIFERWMQWKPEP----QAWNSYLKFEQRLKLFENTRLIFEK 201
Query: 233 -ILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEE- 290
IL +P + ++ F+E L + A + A+ E G N+E+
Sbjct: 202 YILVHPYIKTWIKYTKFEE-----RLGNIENARTIFQRAIEFLG---EDG-----NDEQL 248
Query: 291 -VQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE----------- 338
+ E+ K + A + KY A+ +AK+ FE
Sbjct: 249 FIAFAKFEEKYKEIE----RARVIYKY-AIDHVPKSRAKDLFDTFTNFEKQHGDRIGIED 303
Query: 339 TAIRRPYFHVKPLSVTELENWHNYLDFI---ERDGDFNKVVKLYERCL--IACANYPEYW 393
+ + F + +N+ + D++ E +G+ K ++YER + + N ++W
Sbjct: 304 VVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHW 363
Query: 394 IRYV-LCMEASGSMDLAHNALARATHVF---VKRLP-------EIHLFAARFKEQNGDID 442
RY+ L + + +L + RA V+ +K +P +I + A F+ + ++D
Sbjct: 364 KRYIYLWINYALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLD 423
Query: 443 GARAAY-QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 501
AR Y Q + + + I ++E LGN + +LYE+ + I +P
Sbjct: 424 KARLIYGQAIGRNPKSKIFDQYI---HLEIELGNFDRVRTLYEKYLEI---------MPD 471
Query: 502 LYAQYSRFLHLVSRNAE--KARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQ 559
+ +F L + E +AR I ++ L +P + F + KQ DF++Q
Sbjct: 472 NCDAWCKFAQLETELGETVRARAIFELAIQQPNLDRPEV-VWKDFIDSEIQLKQFDFVKQ 530
Query: 560 LVDKFL 565
L K L
Sbjct: 531 LYRKLL 536
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 38/213 (17%)
Query: 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426
E D + ++ER L P WI+Y + +++LA N RA + R+ +
Sbjct: 86 ESQKDLTRARSVFERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIWDRAV-CLLPRVSQ 144
Query: 427 IHLFAARFKEQNGDIDGARAAYQ--------------LVHTETSPGLLE----------- 461
+ ++ G+ ARA ++ + E L E
Sbjct: 145 LWFKYTFMEDMLGNYPAARAIFERWMQWKPEPQAWNSYLKFEQRLKLFENTRLIFEKYIL 204
Query: 462 ------AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 515
IK+ E RLGN+E+A +++++AI + + L + +A++ +
Sbjct: 205 VHPYIKTWIKYTKFEERLGNIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEE----KYK 260
Query: 516 NAEKARQILVDSLDHVQLS--KPLLEALIHFES 546
E+AR I ++DHV S K L + +FE
Sbjct: 261 EIERARVIYKYAIDHVPKSRAKDLFDTFTNFEK 293
>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4
Length = 848
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 162/385 (42%), Gaps = 53/385 (13%)
Query: 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 175
N+ R+V++ ++ P W Y + E R +D+ +YER V V V W+ Y
Sbjct: 325 NVAGARQVFERWMEWQPEEQA-WHSYINFELRYKEVDRARTIYERFV-LVHPDVKNWIKY 382
Query: 176 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT---- 231
F + R+++ER + + G +++ L+ + ++E Q+E+ RV +IY
Sbjct: 383 ARFE-EKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALD 441
Query: 232 RILENPIQQLDRYFSSF-KEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEE 290
RI + Q+L + ++ F K+F R + + + V+ + EVKAN
Sbjct: 442 RISKQDAQELFKNYTIFEKKFGDRRGIED-----------IIVSKRRFQYEEEVKANPHN 490
Query: 291 VQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP 350
DA + V + EAE AVR E+Y++A I R Y
Sbjct: 491 Y--DAWFDYLRLVESD-AEAE------AVR-EVYERAIANVPPIQEKRHWKRYIYL---- 536
Query: 351 LSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACAN----YPEYWIRYVLCMEASGS 405
W NY + E + D + ++Y+ L + + + WI Y +
Sbjct: 537 --------WINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKN 588
Query: 406 MDLAHNALARATHVFVKRLPEIHLFAA--RFKEQNGDIDGARAAYQLVHTETSPGLLEAI 463
+ LA AL + + + P+ LF + Q + D R Y+ E P +
Sbjct: 589 LSLARRALGTS----IGKCPKNKLFKVYIELELQLREFDRCRKLYEKF-LEFGPENCTSW 643
Query: 464 IKHANMERRLGNLEDAFSLYEQAIA 488
IK A +E LG+++ A ++YE AI+
Sbjct: 644 IKFAELETILGDIDRARAIYELAIS 668
Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 136/337 (40%), Gaps = 53/337 (15%)
Query: 273 VAAAPSETGAEVKANEEEVQPDATEQTSK----PVSAGLTEAEELEKYIAVREEMYKKAK 328
VA ++ AEV+ E++ +A E+ + P +T+ EEL Y +K K
Sbjct: 176 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY------KLRKRK 229
Query: 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN 388
F+ I T I NW Y + E + + +YER L
Sbjct: 230 TFEDNIRKNRTVI---------------SNWIKYAQWEESLKEIQRARSIYERALDVDYR 274
Query: 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF---KEQNGDIDGAR 445
W++Y + ++ A N RA + LP ++ F ++ +E G++ GAR
Sbjct: 275 NITLWLKYAEMEMKNRQVNHARNIWDRA----ITTLPRVNQFWYKYTYMEEMLGNVAGAR 330
Query: 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 505
++ E P +A + N E R ++ A ++YE+ + + ++ + +
Sbjct: 331 QVFER-WMEWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKN-------WIK 381
Query: 506 YSRF--LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDK 563
Y+RF H +A K + V+ + + L A FE Q +++ +++ K
Sbjct: 382 YARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV----RVIYK 437
Query: 564 FLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLI 600
+ + D S +A +EL + F FGD + I
Sbjct: 438 YAL---DRISKQDA---QELFKNYTIFEKKFGDRRGI 468
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 112 LAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDI 171
+ Q N+ RR + + P + K Y + E ++ D+ ++YE+ ++ +
Sbjct: 584 IRQKNLSLARRALGTSIGKCPKNKLF-KVYIELELQLREFDRCRKLYEKFLEFGPENCTS 642
Query: 172 WLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 231
W+ + GD + R ++E ++ D + LW YI++E Q+E R +Y
Sbjct: 643 WIKFAELE-TILGDIDRARAIYELAISQPRLD-MPEVLWKSYIDFEIEQEETERTRNLYR 700
Query: 232 RILENPIQQLDRYFSSFKEFAAS 254
R+L+ Q + + SF +F S
Sbjct: 701 RLLQRT--QHVKVWISFAQFELS 721
Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 114 QDNIVKIRRV-YDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV------- 165
+D IV RR Y+ + P Y W Y + V EVYERA+ V
Sbjct: 469 EDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKR 528
Query: 166 --TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSF-PLWDKYIEYEYMQQ 221
+ +W++Y ++ DPE R++++ L + +F +W Y ++E Q+
Sbjct: 529 HWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQK 587
>sp|Q2UKV8|RNA14_ASPOR mRNA 3'-end-processing protein rna14 OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=rna14 PE=3 SV=1
Length = 1078
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV 157
D AW L+ E ++ I R VY+ FL FP W YA E+ + + ++ ++
Sbjct: 265 DIPAWLELINEHRN--RNRIDSAREVYERFLTAFPFSAEQWVAYATMESELNELYRLEQI 322
Query: 158 YERAVQGVTYSVDIWLHYCIF-------AINTYGDP-ETIRRLFERGLAYVGTDYLSFPL 209
+ R + + V +W Y + +T G I ++ L YVG D S +
Sbjct: 323 FNRTLLTIP-DVQLWTVYLDYVRRRNPLTTDTTGQSRRIISSAYDLALQYVGVDKDSGSI 381
Query: 210 WDKYIEY 216
W Y+++
Sbjct: 382 WTDYVQF 388
>sp|P17886|CRN_DROME Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2
Length = 702
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH 174
+N+ R+V++ ++ P W+ Y + E R +D+ E+YER V V V W+
Sbjct: 158 ENVAGARQVFERWMEWQPEEQA-WQTYVNFELRYKEIDRAREIYERFVY-VHPDVKNWIK 215
Query: 175 YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234
+ F ++G RR+FER + + G DY+ L+ + +E Q+E R +IY L
Sbjct: 216 FARFE-ESHGFIHGSRRVFERAVEFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYAL 274
Query: 235 EN 236
++
Sbjct: 275 DH 276
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 99/442 (22%), Positives = 180/442 (40%), Gaps = 68/442 (15%)
Query: 138 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGL 197
W KYA+ E + ++ +++RAV + W Y + + R++FER +
Sbjct: 113 WLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKYT-YMEEMLENVAGARQVFERWM 171
Query: 198 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL------ENPIQQLDRYFSSFKE- 250
+ + W Y+ +E +E R IY R + +N I+ F+ F+E
Sbjct: 172 EWQPEE----QAWQTYVNFELRYKEIDRAREIYERFVYVHPDVKNWIK-----FARFEES 222
Query: 251 ---FAASRPLSELRTAE----EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPV 303
SR + E R E + + +A A E G + + A + K
Sbjct: 223 HGFIHGSRRVFE-RAVEFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYALDHLPKDR 281
Query: 304 SAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAI--RRPYFHVKPLSV--TELENW 359
+ L +A Y K ++ G E I +R Y + + ++ T + W
Sbjct: 282 TQELFKA-------------YTKHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAW 328
Query: 360 HNYLDFIERDGDFNKVVKLYERCL--IACANYPEYWIRYV-LCMEASGSMDLAHNALARA 416
+YL IE +GD +++ + YER + + AN +W RY+ L + + +L R
Sbjct: 329 FDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYIYLWINYALYEELEAEDAERT 388
Query: 417 THVF---VKRLP-------EIHLFAARFKEQNGDIDGARAAYQL-VHTETSPGLLEAIIK 465
++ ++ +P ++ L A+F+ + ++ AR A L + L I
Sbjct: 389 RQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGMCPRDKLFRGYI- 447
Query: 466 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILV 525
++E +L E LYE+ +E G E+ T M +A+ L + ++AR I
Sbjct: 448 --DLEIQLREFERCRMLYEK--FLEFGPENCVTW-MKFAELENLLG----DTDRARAIFE 498
Query: 526 DSLDHVQLSKP--LLEALIHFE 545
++ +L P L +A I FE
Sbjct: 499 LAVQQPRLDMPELLWKAYIDFE 520
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 119 KIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD--IWLHYC 176
+ R +Y+ FL P W K+A+ E +G D+ ++E AVQ + +W Y
Sbjct: 458 RCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYI 517
Query: 177 IFAINTYGDPETIRRLFERGL 197
F + G+ E R+L+ER L
Sbjct: 518 DFEV-ALGETELARQLYERLL 537
>sp|Q5AM44|RNA14_CANAL mRNA 3'-end-processing protein RNA14 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=RNA14 PE=3 SV=1
Length = 791
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 26/191 (13%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N D++ W L+++ + +DN ++R +D +L F W KY +E
Sbjct: 23 LELNPLDYNKWQKLIDQL--IIKDNQEQVRNTFDKYLKIFKFDGASWCKYIKYELNRDEK 80
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFA-----INTYGDPE--TIRRLFERGLAYVGTDY 204
+KV ++++ + G+T +V++ Y + T G+ + + FE + VG D
Sbjct: 81 EKVENLFQQCL-GITDNVELCRLYVDYVRGVTDFVTGGEKARGVVVQAFEFAINKVGIDI 139
Query: 205 LSFPLWDKYIEYEY---------MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF---- 251
S LW YI++ QQ+ + +Y + L P + ++ +S + ++
Sbjct: 140 TSESLWQDYIQFLQSWNPNANWEQQQKIDLIRKVYKKFLTIPTENIEVSWSQYTKWENEL 199
Query: 252 ---AASRPLSE 259
AS+ +SE
Sbjct: 200 NPATASKFISE 210
>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2
SV=1
Length = 690
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 102/457 (22%), Positives = 178/457 (38%), Gaps = 83/457 (18%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N + S W + E L + I + R +Y+ L W KYA+ E + +
Sbjct: 74 IRKNRTVISNWIKYAQWEESLKE--IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQV 131
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWD 211
+ +++RA+ + W Y + G+ R++FER + + + W
Sbjct: 132 NHARNIWDRAITTLPRVNQFWYKYT-YMEEMLGNVAGARQVFERWMEWQPEE----QAWH 186
Query: 212 KYIEYEYMQQEWSRVAMIYTR-ILENPIQQLDRYFSSFKE----FAASRPLSELRTAE-- 264
YI +E +E R IY R +L +P + ++ F+E FA +R + E R E
Sbjct: 187 SYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYE-RAVEFF 245
Query: 265 --EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE 322
E + VA A E + + A ++ SK EA+EL K + E+
Sbjct: 246 GDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISK------QEAQELFKNYTIFEK 299
Query: 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYE 380
+ + + I+ +R + + + + + W +YL +E D + + V ++YE
Sbjct: 300 KFGDRRGIEDIIVS-----KRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYE 354
Query: 381 RCLIACANYP-----EYWIRYVLC---------MEAS----------GSMDLA-HNALA- 414
R A AN P +W RY+ +EA S++L H
Sbjct: 355 R---AIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTF 411
Query: 415 ---------------------RATHVFVKRLPEIHLFAA--RFKEQNGDIDGARAAYQLV 451
RA + + P+ LF + Q + D R Y+
Sbjct: 412 AKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKF 471
Query: 452 HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 488
E P + IK A +E LG++E A ++YE AI+
Sbjct: 472 -LEFGPENCTSWIKFAELETILGDIERARAIYELAIS 507
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 116/291 (39%), Gaps = 43/291 (14%)
Query: 273 VAAAPSETGAEVKANEEEVQPDATEQTSK----PVSAGLTEAEELEKYIAVREEMYKKAK 328
VA ++ AEV+ E++ +A E+ + P +T+ EEL Y +K K
Sbjct: 15 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY------KLRKRK 68
Query: 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN 388
F+ I T I NW Y + E + + +YER L
Sbjct: 69 TFEDNIRKNRTVI---------------SNWIKYAQWEESLKEIQRARSIYERALDVDYR 113
Query: 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF---KEQNGDIDGAR 445
W++Y + ++ A N RA + LP ++ F ++ +E G++ GAR
Sbjct: 114 NITLWLKYAEMEMKNRQVNHARNIWDRA----ITTLPRVNQFWYKYTYMEEMLGNVAGAR 169
Query: 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 505
++ E P +A + N E R +E A ++YE+ + + ++ + +
Sbjct: 170 QVFER-WMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN-------WIK 220
Query: 506 YSRF--LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQI 554
Y+RF H +A K + V+ + + L A FE Q +++
Sbjct: 221 YARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV 271
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 139 KKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 198
K Y + E ++ D+ ++YE+ ++ + W+ + GD E R ++E ++
Sbjct: 449 KGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELE-TILGDIERARAIYELAIS 507
Query: 199 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAAS 254
D + LW YI++E Q+E R +Y ++L+ Q + + SF +F S
Sbjct: 508 QPRLD-MPEVLWKSYIDFEIEQEETERTRNLYRQLLQRT--QHVKVWISFAQFELS 560
>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1
Length = 690
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 102/457 (22%), Positives = 178/457 (38%), Gaps = 83/457 (18%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ N + S W + E L + I + R +Y+ L W KYA+ E + +
Sbjct: 74 IRKNRTVISNWIKYAQWEESLKE--IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQV 131
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWD 211
+ +++RA+ + W Y + G+ R++FER + + + W
Sbjct: 132 NHARNIWDRAITTLPRVNQFWYKYT-YMEEMLGNVAGARQVFERWMEWQPEE----QAWH 186
Query: 212 KYIEYEYMQQEWSRVAMIYTR-ILENPIQQLDRYFSSFKE----FAASRPLSELRTAE-- 264
YI +E +E R IY R +L +P + ++ F+E FA +R + E R E
Sbjct: 187 SYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYE-RAVEFF 245
Query: 265 --EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE 322
E + VA A E + + A ++ SK EA+EL K + E+
Sbjct: 246 GDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISK------QEAQELFKNYTIFEK 299
Query: 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYE 380
+ + + I+ +R + + + + + W +YL +E D + + V ++YE
Sbjct: 300 KFGDRRGIEDIIVS-----KRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYE 354
Query: 381 RCLIACANYP-----EYWIRYVLC---------MEAS----------GSMDLA-HNALA- 414
R A AN P +W RY+ +EA S++L H
Sbjct: 355 R---AIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTF 411
Query: 415 ---------------------RATHVFVKRLPEIHLFAA--RFKEQNGDIDGARAAYQLV 451
RA + + P+ LF + Q + D R Y+
Sbjct: 412 AKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKF 471
Query: 452 HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 488
E P + IK A +E LG++E A ++YE AI+
Sbjct: 472 -LEFGPENCTSWIKFAELETILGDIERARAIYELAIS 507
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 116/291 (39%), Gaps = 43/291 (14%)
Query: 273 VAAAPSETGAEVKANEEEVQPDATEQTSK----PVSAGLTEAEELEKYIAVREEMYKKAK 328
VA ++ AEV+ E++ +A E+ + P +T+ EEL Y +K K
Sbjct: 15 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY------KLRKRK 68
Query: 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN 388
F+ I T I NW Y + E + + +YER L
Sbjct: 69 TFEDNIRKNRTVI---------------SNWIKYAQWEESLKEIQRARSIYERALDVDYR 113
Query: 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF---KEQNGDIDGAR 445
W++Y + ++ A N RA + LP ++ F ++ +E G++ GAR
Sbjct: 114 NITLWLKYAEMEMKNRQVNHARNIWDRA----ITTLPRVNQFWYKYTYMEEMLGNVAGAR 169
Query: 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 505
++ E P +A + N E R +E A ++YE+ + + ++ + +
Sbjct: 170 QVFER-WMEWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKN-------WIK 220
Query: 506 YSRF--LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQI 554
Y+RF H +A K + V+ + + L A FE Q +++
Sbjct: 221 YARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV 271
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 139 KKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 198
K Y + E ++ D+ ++YE+ ++ + W+ + GD E R ++E ++
Sbjct: 449 KGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELE-TILGDIERARAIYELAIS 507
Query: 199 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAAS 254
D + LW YI++E Q+E R +Y ++L+ Q + + SF +F S
Sbjct: 508 QPRLD-MPEVLWKSYIDFEIEQEETERTRNLYRQLLQRT--QHVKVWISFAQFELS 560
>sp|Q4PCV8|RNA14_USTMA mRNA 3'-end-processing protein RNA14 OS=Ustilago maydis (strain 521
/ FGSC 9021) GN=RNA14 PE=3 SV=1
Length = 945
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 92 VKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 151
++ + D AW L+EE + +++++ R +YD F FP W Y D E +
Sbjct: 185 IRIDPRDGEAWLNLIEEAQ--SREDMAATRALYDRFFKVFPNQARQWLAYLDLELAHSNF 242
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFA--INTYG-------DP--ETIRRL----FERG 196
+V ++ + ++ T SVD+W Y + +N DP E RR+ +E
Sbjct: 243 AQVEAIFNQCLR-TTPSVDLWKFYLSYTRRVNPLAPSTGAEEDPAREQTRRVLEGAYEFA 301
Query: 197 LAYVGTDYLSFPLWDKYI 214
L ++G D S +W YI
Sbjct: 302 LRFIGNDKDSGSIWTDYI 319
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDIS 1087
+ KSV++ N+ T EIEE F+ G+I P F + +K+ +A++EF+D S
Sbjct: 53 DAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKN-----FAYIEFDDSS 107
Query: 1088 GVQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSY 1130
++NA+ + R + + +R N G RG RG++
Sbjct: 108 SIENALVMNGSLFRSRPIVVTAKRTNIPGMGH-GVRGSSRGTF 149
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQN 1091
E + VYV NLP V E+E+ F +GRIK +V + K G +AFVEFED ++
Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIK----YV-DIKSGRGPAFAFVEFEDHRDAED 61
Query: 1092 AIQASP-IQLAGRQVYIE 1108
A++A + GR++ +E
Sbjct: 62 AVRARDGYEFDGRRIRVE 79
>sp|P87312|CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf4 PE=1 SV=1
Length = 674
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 107/255 (41%), Gaps = 43/255 (16%)
Query: 302 PVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN 361
P +T+ EEL+++ +K KEF E AIRR + + +W
Sbjct: 37 PPKINITDLEELQEFQG------RKRKEF-------EDAIRR--------NRLAMGHWMR 75
Query: 362 YLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV 421
Y + +F + ++ER L + Y W++Y+ C + +++ A N RA V
Sbjct: 76 YGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRA----V 131
Query: 422 KRLPEIHLFAARF---KEQNGDIDGARAAYQ-LVHTETSPGLLEAIIKHANMERRLGNLE 477
+LP + ++ +E G+I G R ++ + E + I+ MERR E
Sbjct: 132 TQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEPDENCWMSYIR---MERRYHENE 188
Query: 478 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL---VDSLDHVQLS 534
A +YE+ + + H + L +++RF NA RQ+ +D+L L+
Sbjct: 189 RARGIYERFVVV-----HPEVTNWL--RWARFEEECG-NAANVRQVYLAAIDALGQEFLN 240
Query: 535 KPLLEALIHFESIQS 549
+ A FE Q
Sbjct: 241 ERFFIAFAKFEIRQK 255
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 15/177 (8%)
Query: 119 KIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD-------- 170
K R Y+ L + P Y W E G ++ + E YE+A+ V V+
Sbjct: 303 KRRLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYV 362
Query: 171 -IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSF-PLWDKYIEYEYMQQEWSRVAM 228
IWL+YC+F D + R++++ L + +F LW Y +E Q++
Sbjct: 363 YIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVARK 422
Query: 229 IYTRIL-ENPIQQLDRYFSSF----KEFAASRPLSELRTAEEVDAAAVAVAAAPSET 280
R L P +L R + F K+F R L E + +A A + A ET
Sbjct: 423 TLGRALGMCPKPKLFRGYIEFEDAIKQFDRCRILYEKWILYDPEACAPWLGYAALET 479
>sp|Q6C8L8|RNA14_YARLI mRNA 3'-end-processing protein RNA14 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RNA14 PE=3 SV=1
Length = 806
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 26/189 (13%)
Query: 85 EDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH 144
EDR + AN D AW L+ + ++ + + R +Y+ FLA +PL W +Y
Sbjct: 197 EDR----IAANPRDMPAWLDLISTI--VRKEKLDESRDIYERFLALYPLSAEIWIEYITL 250
Query: 145 EARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF-----AINTYGDPET-----IRRLFE 194
E G ++ +++ R + + ++ +W Y + +++ D T I + FE
Sbjct: 251 EMDNGEFKRLEQLFGRCLTRLP-NLKLWNIYLTYVRRVNVLSSESDKITEARTNIIKAFE 309
Query: 195 RGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRILENPIQQLDRYF 245
L +VG D S +W +Y+++ QQ+ IY + + P+ L +
Sbjct: 310 FYLDHVGIDRESGNVWFEYLDFIKSKPATTTWEEQQKNDLTRKIYRKAIGIPLNNLSILW 369
Query: 246 SSFKEFAAS 254
+++ F S
Sbjct: 370 TAYTNFEYS 378
>sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans
GN=EEED8.12 PE=4 SV=1
Length = 197
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK----PDGVFVRNRKDVVGVCYAFVEFEDIS 1087
+ KSV++ N+ T E+EE F+ G I P F + +K+ +A++EF+D S
Sbjct: 59 DAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKN-----FAYIEFDDSS 113
Query: 1088 GVQNAIQASPIQLAGRQVYIEERRPNTGSTSRGGRRGRGRGSY 1130
++NA+ + R + + +R N G RG RG++
Sbjct: 114 SIENALVMNGSLFRSRPIVVTAKRTNIPGMGH-GVRGSSRGTF 155
>sp|Q5REG1|SART3_PONAB Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo
abelii GN=SART3 PE=2 SV=1
Length = 981
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 123/317 (38%), Gaps = 62/317 (19%)
Query: 117 IVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS--MDK--VVEVYERAVQGVTYSVDIW 172
+ K+R FPL W ++ E + +D+ V +++E+AV+ +IW
Sbjct: 128 LTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDYI-CPNIW 186
Query: 173 L---HYCIFAINTYGDPETIRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQQEWSRVAM 228
L Y + I G E +R +FER L+ VG LW+ Y E+E E +R
Sbjct: 187 LEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYREFESAIVEAARPVA 246
Query: 229 IYTRILENPI---QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVK 285
+ + QL++ S F+ A PL ++ T AE +
Sbjct: 247 GFLSPFDREQTFDSQLEKVHSLFRRQLAI-PLYDMEA-----------------TFAEYE 288
Query: 286 ANEEEVQPDATEQTS----------KPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI- 334
E+ P++ Q KP L +AE A R Y+ +F+ KI
Sbjct: 289 EWSEDPIPESVIQNYNKALQQLEKYKPYEEALLQAE------APRLAEYQAYIDFEMKIG 342
Query: 335 ------IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVV-KLYERCLIACA 387
+ FE A+ V+ V +L W Y +++R +V ++ R + C
Sbjct: 343 DPARIQLIFERAL------VENCLVPDL--WIRYSQYLDRQLKVKDLVLSVHNRAIRNCP 394
Query: 388 NYPEYWIRYVLCMEASG 404
W RY+L ME G
Sbjct: 395 WTVALWSRYLLAMERHG 411
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 16/141 (11%)
Query: 119 KIRRVYDAFLAEFPLCYGYWKKYADHEAR-VGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177
+I+ +++ L E L W +Y+ + R + D V+ V+ RA++ ++V +W Y +
Sbjct: 346 RIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWTVALWSRY-L 404
Query: 178 FAINTYG-DPETIRRLFERGL--AYV-GTDYLSFPLWDKYIEY-----EYMQ---QEWSR 225
A+ +G D + I FE+ L ++ TDY+ +W Y++Y ++ Q +E
Sbjct: 405 LAMERHGVDHQVISVTFEKALNAGFIQATDYVE--IWQAYLDYLRRRVDFKQDSSKELEE 462
Query: 226 VAMIYTRILENPIQQLDRYFS 246
+ +TR LE Q+++ F+
Sbjct: 463 LRAAFTRALEYLKQEVEERFN 483
>sp|Q6BWC0|NTF2_DEBHA Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NTF2 PE=3 SV=1
Length = 124
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI- 781
V S F YYQ + Y + SM+ + + A DI ++SL F +
Sbjct: 8 VASEFCNFYYQQFDSDRTQLGNLYRE-QSMLTFETSQLQGAK---DIVEKLVSLPFQKVA 63
Query: 782 -EIKTINSL-GSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIF 835
I T+++ GS NG +LVMV+G + + +++ Q F L P Y+V NDIF
Sbjct: 64 HRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIPDGNSYYVFNDIF 119
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 72/141 (51%), Gaps = 16/141 (11%)
Query: 119 KIRRVYDAFLAEFPLCYGYWKKYADHEAR-VGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177
+I+ +++ L E L W +Y+ + R + D V+ V+ RA++ ++V +W Y +
Sbjct: 328 RIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWTVALWSRY-L 386
Query: 178 FAINTYG-DPETIRRLFERGL--AYV-GTDYLSFPLWDKYIEY-----EYMQ---QEWSR 225
A+ +G D + I FE+ L ++ TDY+ +W Y++Y ++ Q +E
Sbjct: 387 LAMERHGVDHQVISVTFEKALNAGFIQATDYVE--IWQAYLDYLRRRVDFKQDSSKELEE 444
Query: 226 VAMIYTRILENPIQQLDRYFS 246
+ +TR LE Q+++ F+
Sbjct: 445 LRAAFTRALEYLKQEVEERFN 465
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 32/161 (19%)
Query: 102 WTALLEETEKLAQDNIVKIRRVYDAFLAEFP--LCYGYWKKYADHE----ARVGSMDKVV 155
W L + +AQD + + VYD F +C W +Y + + G ++KV
Sbjct: 149 WLEWLHDEISMAQDGLDR-EHVYDLFEKAVKDYICPNIWLEYGQYSVGGIGQKGGLEKVR 207
Query: 156 EVYERAVQGV----TYSVDIWLHYCIF--AINTYGDPETIRRLFERGLAYVGTDYLSFPL 209
V+ERA+ V T + +W Y F AI E + LF R LA PL
Sbjct: 208 SVFERALSSVGLHMTKGLALWEAYREFESAIVEAARLEKVHSLFRRQLA--------IPL 259
Query: 210 WD---KYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRY 244
+D + EYE EWS I +++N +QQL++Y
Sbjct: 260 YDMEATFAEYE----EWSEDP-IPESVIQNYNKALQQLEKY 295
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396
L + Y+DF + GD ++ ++ER L+ P+ WIRY
Sbjct: 310 LAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRY 350
>sp|Q4PB37|CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CLF1 PE=3 SV=1
Length = 781
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 141 YADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV 200
Y + E + D+ ++YE+A++ + W+ + N + D + R LFE G+
Sbjct: 464 YIELEVSLKEFDRARKIYEKALEWDPTNSQTWVRFAELEKNLF-DTDRARALFELGVGQA 522
Query: 201 ----GTDYLSFP--LWDKYIEYEYMQQEWSRVAMIYTRIL 234
+ L P +W YI++E+ ++EW +V +Y R+L
Sbjct: 523 EGGEASGGLDMPEIVWKAYIDFEFEEREWEKVDALYERLL 562
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 105/254 (41%), Gaps = 37/254 (14%)
Query: 282 AEVKANEEEVQPDATEQTSKPVSA---GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 338
A ++ + E++ +A E+ P SA + + EELE+Y R FE
Sbjct: 14 APIQISAEQLLREAQERQEAPASAPVQKIEDYEELEEYRGRRRS-------------EFE 60
Query: 339 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398
+RR + + W Y + G+ ++ +YER L ++ W+RY
Sbjct: 61 DRLRRNGLN--------MSTWIKYASWEASQGEMDRCRSIYERALDVEPHHLPLWLRYTE 112
Query: 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ-LVHTETSP 457
++ A N RA + + R+ ++ +E G+I G R ++ + E
Sbjct: 113 QELKMRNVQHARNLYDRAVSI-LPRIDQLWYKYVHLEELLGNIPGTRQVFERWMKWEPEE 171
Query: 458 GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 517
A I N+E R L+ A +++E+ + +P + ++++F N
Sbjct: 172 KAWHAYI---NLEVRYDELDRASAIWERCVT-------CHPVPKQWIRWAKFEEDRG-NL 220
Query: 518 EKARQILVDSLDHV 531
EKAR + +LD++
Sbjct: 221 EKARIVFQMALDYI 234
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 133 LCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRL 192
L W KYA EA G MD+ +YERA+ + + +WL Y + + + R L
Sbjct: 68 LNMSTWIKYASWEASQGEMDRCRSIYERALDVEPHHLPLWLRYTEQELKM-RNVQHARNL 126
Query: 193 FERGLAYV-GTDYLSFPLWDKYIEYE 217
++R ++ + D LW KY+ E
Sbjct: 127 YDRAVSILPRID----QLWYKYVHLE 148
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 1034 KSVYVRNLPSTVTAFEIEEE----FQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
+++YVR S++ EI++E F G + V V ++ G F + SG
Sbjct: 479 RTIYVRGFSSSLGEDEIKKELRSHFSKCGEV--TRVHVPTDRET-GASRGFAYIDLTSGF 535
Query: 1090 QNAIQASPIQLAGRQVYIEERRPNTG----STSRGGRRG--RGR--------GSYQTDAP 1135
A+Q S ++ G +++EE RP S++R RG RGR G + AP
Sbjct: 536 DEALQLSGSEIGGGNIHVEESRPRDSDEGRSSNRAPARGAPRGRHSDRAPRGGRFSDRAP 595
Query: 1136 RGRFGGRGLGRG 1147
RGR RG RG
Sbjct: 596 RGRHSDRGAPRG 607
>sp|Q75AA5|NTF2_ASHGO Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1
Length = 125
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 768 DIHSLVISLNFTAIE--IKTINSL-GSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824
DI ++SL F ++ I T+++ S NG VLVM++G + + ++F Q F L P+
Sbjct: 49 DIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMPE 108
Query: 825 EKGYFVLNDIF 835
Y+V NDIF
Sbjct: 109 GNSYYVFNDIF 119
>sp|Q4WXX4|RNA14_ASPFU mRNA 3'-end-processing protein rna14 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=rna14 PE=3 SV=1
Length = 1029
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV 157
D AW L+ E +++ R V++ FL FP W YA E+ + + ++ ++
Sbjct: 266 DIPAWLELINEHR--SRNRFDSARDVFERFLKVFPFAAEQWVAYAKMESELNDLYRLEQI 323
Query: 158 YERAVQGVTYSVDIWLHYCIF-------AINTYGDPE-TIRRLFERGLAYVGTDYLSFPL 209
+ R + + V +W Y + +T G I +E ++G D S +
Sbjct: 324 FNRTLLTIP-DVQLWSVYLDYVRRRNPLTTDTTGQARRIISSAYELAFQHIGVDKDSGSI 382
Query: 210 WDKYIEY 216
W Y+++
Sbjct: 383 WSDYVQF 389
>sp|P33331|NTF2_YEAST Nuclear transport factor 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NTF2 PE=1 SV=2
Length = 125
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 768 DIHSLVISLNFTAIE--IKTINSL-GSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824
DI ++SL F ++ I T+++ S NG VLVM++G + E ++F Q F L P
Sbjct: 49 DIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPD 108
Query: 825 EKGYFVLNDIF 835
Y+V NDIF
Sbjct: 109 GNSYYVFNDIF 119
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 768 DIHSLVISLNFTAI--EIKTINSL-GSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824
DI ++SL F + I T+++ S NG VLVM++G + E ++F Q F L P+
Sbjct: 49 DIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPE 108
Query: 825 EKGYFVLNDIF 835
Y+V NDIF
Sbjct: 109 GSSYYVYNDIF 119
>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1
Length = 691
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 89/214 (41%), Gaps = 35/214 (16%)
Query: 274 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSK 333
AAAP + AE E D E+ + + + EEL +Y +K KEF
Sbjct: 14 AAAPVQISAEQLLRE---ATDRQEEALQKPTQRFEDLEELHEYQG------RKRKEF--- 61
Query: 334 IIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYW 393
E+ +R F++K NW Y + ++ + ++ER L AN W
Sbjct: 62 ----ESYCQRSGFNLK--------NWLQYAQWELEQKEYARSRSVFERALNLHANKVTLW 109
Query: 394 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF---KEQNGDIDGARAAYQ- 449
IRYV S +++ A N L RA V LP + ++ +E G+I G R ++
Sbjct: 110 IRYVEAELKSRNINFARNLLDRA----VTHLPRVDKLWYKYVWVEEMLGNIPGVRQVFER 165
Query: 450 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLY 483
+ + A IK +E+R G + A ++
Sbjct: 166 WMEWQPDEAAWSAFIK---LEQRYGEYDRAREIF 196
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 108/297 (36%), Gaps = 71/297 (23%)
Query: 117 IVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV---------TY 167
+ K RR Y+ + E P Y W YA E G +D+ EVYE+A+ V
Sbjct: 306 LSKRRRHYEDLVRENPKNYDVWFDYARLEEASGDIDRTREVYEKAIAQVPPTQAKRHWRR 365
Query: 168 SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSF-PLWDKYIEYEYMQQEWSRV 226
+ +W+ + ++ +PE R++++ L + +F +W +E Q + +
Sbjct: 366 YIYLWIFFALWEETEAKNPERARQVYDTCLKLIPHRTFTFAKVWMHKAHFEIRQGDLAAA 425
Query: 227 AMIYTRILENPIQQLDRYFSSF-------KEFAASRPLSELRTAEEVDAAAVAVAAAPSE 279
R + + DR F + EF R L E +A P+
Sbjct: 426 RKTLGRAI--GMCPKDRLFKGYIEMEQKLYEFGRCRILYE-----------KHIAYNPAN 472
Query: 280 TGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFET 339
VK E E D ++ + G+ + ++
Sbjct: 473 CSTWVKWAELERGLDDLDRARAILDMGIAQP-----------------------VLDMPE 509
Query: 340 AIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396
+ + Y +DF E +G+++K LYER L+ A++P+ WI Y
Sbjct: 510 VVWKSY-----------------IDFEEEEGEYDKTRSLYER-LLDKADHPKVWISY 548
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 85/184 (46%), Gaps = 19/184 (10%)
Query: 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA-LARA 416
NW + F E G ++V +++ER + + Y + ++ L + + H+ ARA
Sbjct: 208 NWIKWSKFEEEYGTSDRVREVFERAIEELSKYGDEFVEERLFIAYARYEAKLHDLDRARA 267
Query: 417 THVF-VKRLPE-----IHLFAARFKEQNGDIDGA--------RAAYQLVHTETSPGLLEA 462
+ F ++ LP +H F++Q GD +G R Y+ + E +P +
Sbjct: 268 IYKFGLENLPRSKAMLLHKEYTTFEKQYGDREGVEDVVLSKRRRHYEDLVRE-NPKNYDV 326
Query: 463 IIKHANMERRLGNLEDAFSLYEQAIAI---EKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 519
+A +E G+++ +YE+AIA + K H + L+ ++ + ++N E+
Sbjct: 327 WFDYARLEEASGDIDRTREVYEKAIAQVPPTQAKRHWRRYIYLWIFFALWEETEAKNPER 386
Query: 520 ARQI 523
ARQ+
Sbjct: 387 ARQV 390
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAE--FPLCYGYWKKYADHEARVGSM 151
AN S + W L + D++ + R + D +A+ + WK Y D E G
Sbjct: 471 ANCSTWVKWAEL-----ERGLDDLDRARAILDMGIAQPVLDMPEVVWKSYIDFEEEEGEY 525
Query: 152 DKVVEVYERAVQGVTYSVDIWLHYCIFAIN 181
DK +YER + + +W+ Y F IN
Sbjct: 526 DKTRSLYERLLDKADHP-KVWISYAQFEIN 554
>sp|Q6C186|CLF1_YARLI Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CLF1 PE=3 SV=1
Length = 676
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Query: 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 418
W Y + +F + ++ER L + + WIRY+ C +++ A N L RA
Sbjct: 69 WMRYAQWELEQREFARARSVFERALEVNSTHVPTWIRYIQCELKEKNINHARNLLDRAV- 127
Query: 419 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478
+ R+ ++ +E G+I G RA ++ P + A + NME+R +
Sbjct: 128 TLLPRVDKLWFTYVATEETLGNIAGCRAVFERWMHWRPP--VTAWAAYVNMEKRYREFDR 185
Query: 479 AFSLYEQAIAIEKG 492
A + + + + G
Sbjct: 186 ARGILRRYVTVHPG 199
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 91/239 (38%), Gaps = 54/239 (22%)
Query: 60 SLGIESGAAAGQ--ELVDGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNI 117
+LG ESG A Q E+ + +V + RLW ++ W E+L +
Sbjct: 329 TLGQESGLEADQIREIFERAVSNVPPHSKRLWRRYIFLWIKYAIW-------EELENKEV 381
Query: 118 VKIRRVYDAFL-----------------AEFPLCYG---------------------YWK 139
K R +Y + A+F + +G +K
Sbjct: 382 EKAREIYKTCISIIPHKKFTFAKVWLLWAKFEIRHGNLPEARKILGRGLGMSGGKPALYK 441
Query: 140 KYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAY 199
Y EA++ D+ ++Y++ V+ W+ Y GD E R +FE
Sbjct: 442 GYIALEAKLREFDRCRKLYDKYVEKFAEFAAPWMEYAELE-QMLGDEERARAIFELA--- 497
Query: 200 VGTDYLSFP--LWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRP 256
V + P +W ++IE+E ++ + R IY ++L+ + + + SF +F + P
Sbjct: 498 VSQPEMEMPELVWKRFIEFEAEEENYDRARAIYRQLLDRTHGHI-KVWISFAQFEVTVP 555
>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus
GN=Pabpn1l PE=2 SV=1
Length = 269
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGV 1089
E + +SVYV N+ +A E+E F G I + ++ YA++EF S V
Sbjct: 135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILC-DKFSGHPKGYAYIEFASKSSV 193
Query: 1090 QNAIQASPIQLAGRQVYIEERR---PNTGSTSRGGRRGRG-------RGSYQTDAPRGRF 1139
Q A++ GR + + +R P ST RGG R +GS Q PR R
Sbjct: 194 QAAVRLDESTFRGRVIKVLPKRTNFPGISSTDRGGLRTHSSSRAAFLQGSLQRK-PRLRP 252
Query: 1140 GGRGLGRGSA 1149
G+ GRG A
Sbjct: 253 HGQSRGRGRA 262
>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=clf-1 PE=3 SV=1
Length = 695
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 89/220 (40%), Gaps = 35/220 (15%)
Query: 274 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSK 333
A AP + AE E + + QT A L EEL++Y +K KEF
Sbjct: 14 APAPVQISAEQLLREAVDRQEVNLQTPTQRFADL---EELKEYQG------RKRKEF--- 61
Query: 334 IIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYW 393
E +RR + L NW Y + +F + ++ER L N + W
Sbjct: 62 ----EDYVRR--------NRVRLSNWLQYAQWELEQKEFARARSVFERALDVHPNNTQLW 109
Query: 394 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF---KEQNGDIDGARAAY-Q 449
IRYV + +++ A N L RA V RLP + ++ E GDI G R + +
Sbjct: 110 IRYVQAEIKNRNINHARNLLDRA----VTRLPRVTSLWYQYLYVMEMLGDIPGTRQVFDR 165
Query: 450 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489
+ + A I+ +E+R G + A ++ A+
Sbjct: 166 WMKWQPDEQAWSAYIR---LEKRYGEFDRAREIFRAFTAV 202
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 89/460 (19%), Positives = 163/460 (35%), Gaps = 81/460 (17%)
Query: 90 NIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG 149
+ V+ N S W L +L Q + R V++ L P W +Y E +
Sbjct: 63 DYVRRNRVRLSNW--LQYAQWELEQKEFARARSVFERALDVHPNNTQLWIRYVQAEIKNR 120
Query: 150 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPL 209
+++ + +RAV + +W Y ++ + GD R++F+R + + +
Sbjct: 121 NINHARNLLDRAVTRLPRVTSLWYQY-LYVMEMLGDIPGTRQVFDRWMKWQPDE----QA 175
Query: 210 WDKYIEYEYMQQEWSRVAMIY---TRILENPIQQLDRYFSSFKE-FAASRPLSE-----L 260
W YI E E+ R I+ T + P L ++ F+E + S + E +
Sbjct: 176 WSAYIRLEKRYGEFDRAREIFRAFTAVHPEPRTWLK--WAKFEEEYGTSDTVREVFQTAI 233
Query: 261 RTAEEV---DAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYI 317
+T E DA + A + A ++ E + P S +T L +
Sbjct: 234 QTIAETLGDDAVDERIFIAFARYEARLREYERARAIYKFGLDNLPRSKSMT----LHAHY 289
Query: 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVK 377
E+ + + + I+ T RR Y + + W ++ E GD ++ +
Sbjct: 290 TTFEKQFGDKEGVEDVIL---TKRRRLYEEQVKENAKNYDVWFDFARLEESGGDVDRTRE 346
Query: 378 LYERCL--IACANYPEYWIRYVLCM---------------EASGSMDLAHNALARATHVF 420
+YER + + +W RY+ A D N + F
Sbjct: 347 VYERAIAQVPPTQEKRHWRRYIFLFLFYAIWEERETKDIGRARQIYDTCLNLIPHKKFTF 406
Query: 421 VKRLPEIHLFAARFKEQNGDIDGARAA----------------YQLV------------- 451
K + + A F+ + G + AR Y L+
Sbjct: 407 AK----VWVAKAHFEIRQGQLTTARKTLGRAIGMCPKDKIFKEYILLEQKLYEFERCRTL 462
Query: 452 ---HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 488
H +P + IK A +ER L +LE +++E A++
Sbjct: 463 YEKHVMYNPANCQTWIKWAELERGLDDLERTRAIFELAVS 502
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,518,678
Number of Sequences: 539616
Number of extensions: 20267782
Number of successful extensions: 74673
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 736
Number of HSP's that attempted gapping in prelim test: 70401
Number of HSP's gapped (non-prelim): 3857
length of query: 1169
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1040
effective length of database: 121,958,995
effective search space: 126837354800
effective search space used: 126837354800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)