Query 001060
Match_columns 1169
No_of_seqs 848 out of 4227
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 14:43:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1258 mRNA processing protei 100.0 9.9E-55 2.1E-59 494.3 51.4 543 83-638 29-572 (577)
2 KOG0116 RasGAP SH3 binding pro 100.0 1.4E-55 3E-60 497.3 33.4 388 716-1147 9-401 (419)
3 KOG1914 mRNA cleavage and poly 100.0 7.4E-53 1.6E-57 466.1 48.4 480 89-645 10-531 (656)
4 KOG1915 Cell cycle control pro 100.0 2.2E-42 4.9E-47 376.2 43.9 484 80-613 88-628 (677)
5 KOG1915 Cell cycle control pro 100.0 6.5E-38 1.4E-42 341.5 47.5 460 85-613 59-539 (677)
6 COG5107 RNA14 Pre-mRNA 3'-end 100.0 1.1E-34 2.4E-39 314.4 41.9 457 81-613 24-534 (660)
7 KOG0495 HAT repeat protein [RN 100.0 2.2E-30 4.8E-35 292.1 49.6 467 75-614 261-786 (913)
8 KOG2047 mRNA splicing factor [ 100.0 8E-30 1.7E-34 287.7 48.1 497 88-613 16-618 (835)
9 KOG0495 HAT repeat protein [RN 100.0 2.1E-28 4.5E-33 276.2 49.7 423 120-614 395-884 (913)
10 KOG4626 O-linked N-acetylgluco 100.0 1.8E-29 3.8E-34 282.9 38.1 423 81-565 98-524 (966)
11 KOG2047 mRNA splicing factor [ 100.0 7.7E-26 1.7E-30 255.7 44.0 440 81-550 42-601 (835)
12 KOG4626 O-linked N-acetylgluco 100.0 8.8E-27 1.9E-31 261.4 31.2 429 78-572 61-490 (966)
13 KOG2104 Nuclear transport fact 100.0 5.9E-29 1.3E-33 221.4 10.8 115 719-838 5-122 (126)
14 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-24 4.1E-29 282.8 57.8 469 81-608 413-898 (899)
15 TIGR02917 PEP_TPR_lipo putativ 100.0 5.1E-24 1.1E-28 278.7 58.5 476 79-613 377-869 (899)
16 PRK11447 cellulose synthase su 99.9 5.1E-23 1.1E-27 273.7 56.6 420 80-545 43-539 (1157)
17 PRK11447 cellulose synthase su 99.9 3.5E-23 7.6E-28 275.2 53.6 463 82-609 252-739 (1157)
18 TIGR00990 3a0801s09 mitochondr 99.9 6.6E-23 1.4E-27 256.4 50.6 413 99-568 127-572 (615)
19 TIGR00990 3a0801s09 mitochondr 99.9 2E-22 4.3E-27 252.2 54.2 427 136-613 128-574 (615)
20 cd00780 NTF2 Nuclear transport 99.9 8.5E-26 1.8E-30 219.2 13.3 116 720-839 2-119 (119)
21 PRK10049 pgaA outer membrane p 99.9 3.7E-21 8.1E-26 245.1 46.9 406 80-572 30-461 (765)
22 PRK15174 Vi polysaccharide exp 99.9 7.3E-21 1.6E-25 237.6 47.1 347 79-534 56-407 (656)
23 KOG0128 RNA-binding protein SA 99.9 7.8E-21 1.7E-25 222.3 42.1 447 79-610 93-563 (881)
24 PRK15174 Vi polysaccharide exp 99.9 4E-20 8.6E-25 231.0 44.3 328 114-535 55-386 (656)
25 PRK10049 pgaA outer membrane p 99.9 3.8E-20 8.2E-25 235.9 41.5 372 79-538 63-464 (765)
26 PRK09782 bacteriophage N4 rece 99.9 6.2E-18 1.3E-22 215.7 56.3 498 79-614 58-710 (987)
27 KOG2396 HAT (Half-A-TPR) repea 99.9 3.2E-19 6.9E-24 198.7 37.8 444 118-614 88-563 (568)
28 KOG0547 Translocase of outer m 99.9 2.6E-19 5.7E-24 198.1 35.6 432 114-567 128-566 (606)
29 PF02136 NTF2: Nuclear transpo 99.9 4.2E-22 9.2E-27 193.5 11.7 113 723-837 1-118 (118)
30 KOG1914 mRNA cleavage and poly 99.9 8.2E-19 1.8E-23 196.4 39.0 392 125-610 10-464 (656)
31 KOG1070 rRNA processing protei 99.9 3.6E-20 7.9E-25 224.8 28.3 254 336-614 1446-1704(1710)
32 PRK09782 bacteriophage N4 rece 99.8 1.1E-16 2.3E-21 204.5 52.5 261 321-614 484-744 (987)
33 KOG4353 RNA export factor NXT1 99.8 2.1E-20 4.5E-25 169.5 6.9 113 723-840 15-137 (139)
34 PRK14574 hmsH outer membrane p 99.8 7.4E-15 1.6E-19 184.2 51.6 432 78-572 47-518 (822)
35 KOG2002 TPR-containing nuclear 99.8 8.4E-16 1.8E-20 183.3 37.6 408 79-545 321-760 (1018)
36 PRK11788 tetratricopeptide rep 99.8 1.7E-15 3.6E-20 179.5 37.4 279 99-462 35-318 (389)
37 PRK11788 tetratricopeptide rep 99.7 3.9E-15 8.5E-20 176.3 38.4 309 138-572 38-356 (389)
38 KOG2076 RNA polymerase III tra 99.7 5.7E-14 1.2E-18 167.1 45.9 361 79-519 153-544 (895)
39 KOG2002 TPR-containing nuclear 99.7 6.5E-14 1.4E-18 167.4 44.8 445 81-593 110-576 (1018)
40 KOG1126 DNA-binding cell divis 99.7 1.1E-15 2.4E-20 176.8 29.1 302 104-492 322-623 (638)
41 KOG1155 Anaphase-promoting com 99.7 2.1E-14 4.6E-19 158.9 37.1 364 101-530 166-536 (559)
42 PLN03218 maturation of RBCL 1; 99.7 2.3E-13 4.9E-18 175.3 52.5 421 83-610 355-783 (1060)
43 KOG0547 Translocase of outer m 99.7 5.4E-14 1.2E-18 156.5 39.0 437 138-627 118-578 (606)
44 PRK14574 hmsH outer membrane p 99.7 9E-14 1.9E-18 174.5 46.1 408 79-537 82-520 (822)
45 PF13429 TPR_15: Tetratricopep 99.7 3.6E-17 7.9E-22 184.4 13.5 135 353-489 143-277 (280)
46 KOG1155 Anaphase-promoting com 99.7 3.2E-14 6.9E-19 157.5 35.3 324 78-489 177-536 (559)
47 KOG1070 rRNA processing protei 99.7 2.2E-15 4.8E-20 183.9 27.2 217 155-490 1444-1664(1710)
48 PLN03218 maturation of RBCL 1; 99.7 1E-12 2.2E-17 169.5 52.3 408 79-544 384-798 (1060)
49 PLN03134 glycine-rich RNA-bind 99.7 4.7E-16 1E-20 154.8 16.4 83 1032-1115 33-116 (144)
50 KOG2076 RNA polymerase III tra 99.7 3.2E-13 6.9E-18 160.8 41.2 340 100-528 140-510 (895)
51 PLN03081 pentatricopeptide (PP 99.7 2.4E-13 5.2E-18 173.0 43.6 433 99-613 87-526 (697)
52 PLN03081 pentatricopeptide (PP 99.7 3.1E-13 6.7E-18 172.0 44.0 446 79-609 101-556 (697)
53 PLN03077 Protein ECB2; Provisi 99.7 1.6E-13 3.6E-18 178.7 41.6 444 81-614 238-690 (857)
54 KOG0105 Alternative splicing f 99.7 7.8E-17 1.7E-21 155.9 6.8 130 1033-1166 6-146 (241)
55 PF13429 TPR_15: Tetratricopep 99.7 2.4E-16 5.2E-21 177.8 11.9 270 93-452 4-275 (280)
56 PF05843 Suf: Suppressor of fo 99.7 5.7E-16 1.2E-20 173.3 13.9 160 461-646 2-162 (280)
57 KOG2396 HAT (Half-A-TPR) repea 99.6 2.9E-12 6.3E-17 143.8 40.8 437 83-567 89-559 (568)
58 KOG1174 Anaphase-promoting com 99.6 1.2E-12 2.6E-17 142.9 34.8 368 83-550 148-520 (564)
59 TIGR00540 hemY_coli hemY prote 99.6 1.9E-12 4.1E-17 153.9 38.8 293 112-529 95-398 (409)
60 PLN03077 Protein ECB2; Provisi 99.6 3.2E-12 7E-17 166.6 44.5 392 98-561 322-717 (857)
61 PRK12370 invasion protein regu 99.6 1E-12 2.2E-17 162.1 32.5 264 310-603 256-529 (553)
62 COG5107 RNA14 Pre-mRNA 3'-end 99.6 2.5E-12 5.5E-17 141.5 31.5 413 79-569 56-533 (660)
63 COG3063 PilF Tfp pilus assembl 99.6 3.6E-13 7.8E-18 138.0 23.2 205 391-614 36-240 (250)
64 PRK12370 invasion protein regu 99.6 1.3E-12 2.9E-17 161.0 32.7 137 351-490 367-503 (553)
65 KOG0113 U1 small nuclear ribon 99.6 3.2E-14 7E-19 148.5 14.6 94 1019-1114 88-182 (335)
66 KOG1258 mRNA processing protei 99.6 2.7E-12 5.8E-17 148.4 31.7 440 84-595 17-489 (577)
67 KOG1126 DNA-binding cell divis 99.6 7.9E-13 1.7E-17 153.5 26.7 201 319-536 426-626 (638)
68 KOG2003 TPR repeat-containing 99.6 2.7E-12 5.9E-17 140.6 28.7 225 328-572 470-694 (840)
69 PRK10747 putative protoheme IX 99.5 3E-11 6.6E-16 142.9 38.9 119 114-236 97-216 (398)
70 TIGR00540 hemY_coli hemY prote 99.5 5.9E-12 1.3E-16 149.7 32.7 293 79-490 98-400 (409)
71 KOG2003 TPR repeat-containing 99.5 2.1E-11 4.6E-16 133.7 33.4 208 325-550 501-709 (840)
72 TIGR01659 sex-lethal sex-letha 99.5 1.6E-13 3.4E-18 156.3 16.2 81 1034-1115 194-277 (346)
73 KOG0107 Alternative splicing f 99.5 2E-13 4.4E-18 132.2 12.3 79 1033-1117 10-89 (195)
74 KOG1173 Anaphase-promoting com 99.5 3.2E-10 7E-15 129.4 39.0 268 316-595 246-541 (611)
75 KOG0548 Molecular co-chaperone 99.5 4.6E-10 9.9E-15 127.9 39.5 416 79-547 16-472 (539)
76 TIGR02521 type_IV_pilW type IV 99.5 1.9E-11 4.1E-16 132.5 27.3 199 355-565 30-230 (234)
77 TIGR02521 type_IV_pilW type IV 99.5 1.2E-11 2.6E-16 133.9 25.6 199 318-532 35-234 (234)
78 PF05843 Suf: Suppressor of fo 99.5 3.4E-13 7.4E-18 151.0 13.5 133 101-236 3-136 (280)
79 KOG0128 RNA-binding protein SA 99.4 2.7E-10 6E-15 134.9 36.6 392 121-609 99-525 (881)
80 PRK11189 lipoprotein NlpI; Pro 99.4 2.1E-11 4.6E-16 138.2 26.4 147 81-234 42-192 (296)
81 KOG1173 Anaphase-promoting com 99.4 9.6E-11 2.1E-15 133.6 30.9 199 321-535 319-523 (611)
82 COG3063 PilF Tfp pilus assembl 99.4 2E-11 4.4E-16 125.3 23.0 183 360-552 39-224 (250)
83 PRK10747 putative protoheme IX 99.4 1.2E-10 2.6E-15 137.8 32.8 282 90-490 105-391 (398)
84 KOG0624 dsRNA-activated protei 99.4 4.9E-10 1.1E-14 120.0 33.5 309 94-491 33-372 (504)
85 KOG4162 Predicted calmodulin-b 99.4 2.7E-09 5.9E-14 125.9 42.0 410 97-572 321-788 (799)
86 PRK11189 lipoprotein NlpI; Pro 99.4 5.9E-11 1.3E-15 134.6 27.4 219 329-569 41-267 (296)
87 KOG0624 dsRNA-activated protei 99.4 1.1E-09 2.5E-14 117.3 34.4 105 130-238 33-137 (504)
88 TIGR01659 sex-lethal sex-letha 99.4 4.6E-12 1E-16 144.4 15.7 82 1029-1111 103-185 (346)
89 KOG1127 TPR repeat-containing 99.4 1E-09 2.3E-14 131.5 34.9 398 81-530 474-913 (1238)
90 TIGR01648 hnRNP-R-Q heterogene 99.4 4.3E-12 9.3E-17 151.7 15.0 74 1033-1115 233-309 (578)
91 KOG0149 Predicted RNA-binding 99.4 1.6E-12 3.5E-17 132.4 9.5 80 1030-1110 9-88 (247)
92 KOG4162 Predicted calmodulin-b 99.4 4.3E-10 9.3E-15 132.5 30.9 318 119-492 462-786 (799)
93 KOG4207 Predicted splicing fac 99.4 3.3E-12 7.1E-17 126.6 11.3 78 1033-1111 13-91 (256)
94 KOG1125 TPR repeat-containing 99.3 1.1E-10 2.5E-15 133.7 23.9 231 114-420 298-528 (579)
95 KOG0121 Nuclear cap-binding pr 99.3 2.2E-12 4.8E-17 118.2 7.9 80 1032-1112 35-115 (153)
96 COG2956 Predicted N-acetylgluc 99.3 5.7E-09 1.2E-13 111.8 34.5 169 391-570 181-354 (389)
97 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 8.2E-12 1.8E-16 145.8 14.2 83 1031-1114 267-350 (352)
98 KOG1174 Anaphase-promoting com 99.3 7.3E-10 1.6E-14 121.5 27.6 313 91-493 187-504 (564)
99 KOG1156 N-terminal acetyltrans 99.3 2.4E-08 5.3E-13 115.9 40.1 392 81-529 23-467 (700)
100 KOG1127 TPR repeat-containing 99.3 4.3E-09 9.4E-14 126.3 33.0 361 80-490 577-997 (1238)
101 KOG0122 Translation initiation 99.3 3.1E-11 6.7E-16 123.3 12.9 81 1032-1113 188-269 (270)
102 KOG1129 TPR repeat-containing 99.3 1.4E-10 2.9E-15 123.5 17.7 256 115-491 193-460 (478)
103 KOG0548 Molecular co-chaperone 99.3 6.1E-09 1.3E-13 118.9 32.0 361 77-492 48-458 (539)
104 PLN02789 farnesyltranstransfer 99.3 1.9E-09 4.2E-14 122.2 28.0 220 311-546 34-266 (320)
105 KOG0125 Ataxin 2-binding prote 99.3 2.6E-11 5.7E-16 128.4 11.6 77 1033-1112 96-173 (376)
106 PF00076 RRM_1: RNA recognitio 99.3 2.5E-11 5.4E-16 105.7 9.2 69 1036-1106 1-70 (70)
107 PLN03120 nucleic acid binding 99.2 3.7E-11 8.1E-16 127.5 10.5 77 1033-1113 4-80 (260)
108 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 3.6E-11 7.8E-16 140.4 10.9 81 1033-1114 3-84 (352)
109 PLN03213 repressor of silencin 99.2 4.3E-11 9.3E-16 132.0 9.7 76 1032-1112 9-87 (759)
110 COG2956 Predicted N-acetylgluc 99.2 4.2E-08 9.1E-13 105.3 31.3 250 320-594 75-328 (389)
111 KOG2376 Signal recognition par 99.2 4.7E-07 1E-11 104.4 41.7 441 100-614 14-491 (652)
112 cd05804 StaR_like StaR_like; a 99.2 5E-08 1.1E-12 114.1 35.1 314 95-530 2-336 (355)
113 PLN02789 farnesyltranstransfer 99.2 9.8E-09 2.1E-13 116.5 27.3 199 364-571 45-254 (320)
114 PLN03121 nucleic acid binding 99.2 1.1E-10 2.4E-15 121.6 10.3 76 1032-1111 4-79 (243)
115 TIGR03302 OM_YfiO outer membra 99.2 3E-09 6.6E-14 116.6 22.2 177 350-532 27-234 (235)
116 PF14259 RRM_6: RNA recognitio 99.1 1.5E-10 3.3E-15 100.9 8.8 69 1036-1106 1-70 (70)
117 KOG0130 RNA-binding protein RB 99.1 1.2E-10 2.6E-15 107.7 8.0 84 1031-1115 70-154 (170)
118 TIGR01645 half-pint poly-U bin 99.1 1.6E-10 3.4E-15 138.5 11.4 81 1033-1114 204-285 (612)
119 KOG0126 Predicted RNA-binding 99.1 7.7E-12 1.7E-16 121.6 0.2 80 1030-1110 32-112 (219)
120 KOG1125 TPR repeat-containing 99.1 1.7E-09 3.8E-14 124.2 19.2 258 323-603 294-564 (579)
121 KOG1129 TPR repeat-containing 99.1 2.3E-09 4.9E-14 114.4 18.5 240 312-571 223-462 (478)
122 KOG1156 N-terminal acetyltrans 99.1 6.1E-07 1.3E-11 104.6 39.6 411 100-567 9-434 (700)
123 KOG0148 Apoptosis-promoting RN 99.1 4.4E-10 9.5E-15 116.3 12.1 77 1032-1115 163-240 (321)
124 KOG0146 RNA-binding protein ET 99.1 6.1E-11 1.3E-15 121.6 5.6 85 1030-1115 282-367 (371)
125 TIGR01645 half-pint poly-U bin 99.1 1.9E-10 4.1E-15 137.8 10.4 79 1032-1111 106-185 (612)
126 KOG3060 Uncharacterized conser 99.1 2.7E-08 5.8E-13 103.7 24.4 190 371-569 27-222 (289)
127 KOG1840 Kinesin light chain [C 99.1 1.9E-08 4.1E-13 119.0 26.7 260 130-490 194-480 (508)
128 KOG2376 Signal recognition par 99.1 5.2E-07 1.1E-11 104.1 37.0 437 79-572 26-492 (652)
129 PRK10370 formate-dependent nit 99.1 2.8E-09 6E-14 113.1 17.5 123 79-204 53-178 (198)
130 cd05804 StaR_like StaR_like; a 99.1 5.7E-07 1.2E-11 105.1 36.6 174 351-531 109-294 (355)
131 PF12569 NARP1: NMDA receptor- 99.0 1.5E-07 3.2E-12 112.9 31.3 99 100-200 5-107 (517)
132 KOG1840 Kinesin light chain [C 99.0 4.8E-08 1E-12 115.6 26.3 249 351-610 194-479 (508)
133 PRK10370 formate-dependent nit 99.0 4.8E-09 1E-13 111.2 16.3 123 369-493 52-177 (198)
134 PRK15359 type III secretion sy 99.0 5.2E-09 1.1E-13 105.2 15.3 122 337-471 16-137 (144)
135 PRK14720 transcript cleavage f 99.0 7.9E-08 1.7E-12 119.9 28.6 187 127-466 23-209 (906)
136 PRK15179 Vi polysaccharide bio 99.0 2.4E-08 5.1E-13 123.9 23.3 138 352-491 82-219 (694)
137 KOG4212 RNA-binding protein hn 99.0 2.3E-09 4.9E-14 117.3 12.4 79 1032-1112 43-123 (608)
138 KOG0550 Molecular chaperone (D 99.0 1.5E-08 3.3E-13 111.8 17.5 276 114-491 62-352 (486)
139 PRK15359 type III secretion sy 99.0 1.3E-08 2.8E-13 102.4 15.6 114 84-203 12-125 (144)
140 KOG0127 Nucleolar protein fibr 99.0 1.7E-09 3.6E-14 121.7 9.4 83 1030-1113 289-378 (678)
141 KOG1128 Uncharacterized conser 99.0 1.5E-08 3.2E-13 119.2 17.3 215 317-566 401-615 (777)
142 TIGR01628 PABP-1234 polyadenyl 99.0 2.2E-09 4.7E-14 133.3 11.3 77 1035-1112 2-79 (562)
143 TIGR01622 SF-CC1 splicing fact 99.0 2.4E-09 5.2E-14 129.7 11.3 81 1030-1111 86-166 (457)
144 TIGR01628 PABP-1234 polyadenyl 98.9 1.1E-08 2.4E-13 127.0 17.1 80 1032-1113 284-364 (562)
145 KOG0145 RNA-binding protein EL 98.9 3.6E-09 7.9E-14 108.4 10.4 81 1032-1113 277-358 (360)
146 KOG0111 Cyclophilin-type pepti 98.9 5.9E-10 1.3E-14 111.5 4.5 82 1032-1114 9-91 (298)
147 smart00362 RRM_2 RNA recogniti 98.9 3.6E-09 7.7E-14 91.8 9.0 71 1035-1108 1-72 (72)
148 KOG0145 RNA-binding protein EL 98.9 4.8E-09 1E-13 107.6 10.6 85 1030-1115 38-123 (360)
149 KOG0148 Apoptosis-promoting RN 98.9 1.9E-09 4.2E-14 111.6 7.7 82 1033-1115 62-144 (321)
150 KOG3060 Uncharacterized conser 98.9 2.1E-07 4.5E-12 97.2 22.5 174 357-538 50-228 (289)
151 PRK15179 Vi polysaccharide bio 98.9 8.4E-08 1.8E-12 119.1 22.8 141 386-535 82-222 (694)
152 TIGR01648 hnRNP-R-Q heterogene 98.9 4.7E-09 1E-13 125.9 10.5 74 1032-1107 57-132 (578)
153 TIGR01642 U2AF_lg U2 snRNP aux 98.9 5.1E-09 1.1E-13 128.7 11.2 79 1033-1112 295-374 (509)
154 PF12569 NARP1: NMDA receptor- 98.9 1.5E-06 3.2E-11 104.4 31.6 297 79-491 18-336 (517)
155 PRK14720 transcript cleavage f 98.9 2.2E-07 4.7E-12 116.0 25.1 207 351-588 26-268 (906)
156 smart00360 RRM RNA recognition 98.9 6.6E-09 1.4E-13 89.8 8.3 70 1038-1108 1-71 (71)
157 KOG0108 mRNA cleavage and poly 98.9 3.5E-09 7.7E-14 122.1 8.1 80 1034-1114 19-99 (435)
158 TIGR02552 LcrH_SycD type III s 98.9 6E-08 1.3E-12 96.3 15.8 114 86-202 4-117 (135)
159 TIGR01622 SF-CC1 splicing fact 98.9 7.3E-09 1.6E-13 125.5 10.7 79 1033-1112 186-265 (457)
160 TIGR03302 OM_YfiO outer membra 98.8 1.4E-07 3.1E-12 103.3 19.8 166 318-490 37-233 (235)
161 COG5010 TadD Flp pilus assembl 98.8 2.2E-07 4.8E-12 98.1 19.7 173 375-560 52-224 (257)
162 PF08424 NRDE-2: NRDE-2, neces 98.8 1.3E-07 2.7E-12 108.2 19.4 154 83-236 3-183 (321)
163 KOG0114 Predicted RNA-binding 98.8 1.5E-08 3.2E-13 89.9 8.2 76 1032-1111 17-93 (124)
164 KOG0124 Polypyrimidine tract-b 98.8 2.7E-09 5.8E-14 114.0 4.3 76 1034-1110 114-190 (544)
165 KOG0117 Heterogeneous nuclear 98.8 1.5E-08 3.3E-13 111.9 10.0 76 1032-1108 82-159 (506)
166 KOG0117 Heterogeneous nuclear 98.8 2.6E-08 5.5E-13 110.2 11.3 74 1032-1114 258-332 (506)
167 COG0724 RNA-binding proteins ( 98.8 1.6E-08 3.5E-13 113.5 10.1 78 1033-1111 115-193 (306)
168 KOG0127 Nucleolar protein fibr 98.8 1.7E-08 3.6E-13 113.9 8.9 81 1032-1114 116-197 (678)
169 KOG1128 Uncharacterized conser 98.8 8.3E-07 1.8E-11 104.8 23.0 123 368-492 497-619 (777)
170 COG3071 HemY Uncharacterized e 98.8 1.3E-05 2.9E-10 89.1 31.1 295 147-530 96-390 (400)
171 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 2.3E-08 5E-13 121.0 10.4 72 1033-1111 2-76 (481)
172 KOG3617 WD40 and TPR repeat-co 98.8 2.7E-05 5.8E-10 92.3 34.7 90 497-602 1077-1166(1416)
173 cd00590 RRM RRM (RNA recogniti 98.7 4.9E-08 1.1E-12 85.1 9.7 72 1035-1108 1-73 (74)
174 TIGR02552 LcrH_SycD type III s 98.7 2.3E-07 5E-12 92.1 15.7 109 351-461 12-120 (135)
175 KOG0144 RNA-binding protein CU 98.7 3.3E-08 7.2E-13 108.7 9.6 80 1030-1110 31-114 (510)
176 PRK15363 pathogenicity island 98.7 2.9E-07 6.3E-12 91.3 15.0 112 90-204 25-137 (157)
177 KOG0415 Predicted peptidyl pro 98.7 3.5E-08 7.5E-13 105.6 8.6 79 1033-1112 239-318 (479)
178 COG5010 TadD Flp pilus assembl 98.7 1.5E-06 3.3E-11 91.9 20.7 167 352-528 63-229 (257)
179 smart00361 RRM_1 RNA recogniti 98.7 5E-08 1.1E-12 84.8 8.1 62 1047-1108 2-70 (70)
180 KOG0131 Splicing factor 3b, su 98.7 2.3E-08 4.9E-13 98.2 5.4 79 1032-1111 8-87 (203)
181 KOG4209 Splicing factor RNPS1, 98.7 6.4E-08 1.4E-12 103.5 9.4 90 1030-1120 98-187 (231)
182 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.7 1.7E-07 3.8E-12 113.4 14.3 77 1031-1113 273-351 (481)
183 KOG0131 Splicing factor 3b, su 98.7 3.5E-08 7.5E-13 97.0 6.5 82 1033-1114 96-178 (203)
184 PRK04841 transcriptional regul 98.6 9.5E-05 2.1E-09 97.9 40.3 213 320-534 537-764 (903)
185 KOG0153 Predicted RNA-binding 98.6 1.3E-07 2.7E-12 101.9 9.1 78 1029-1113 224-303 (377)
186 KOG0147 Transcriptional coacti 98.6 4.6E-08 1E-12 111.5 5.4 79 1032-1111 277-356 (549)
187 COG3071 HemY Uncharacterized e 98.6 0.00043 9.2E-09 77.5 35.9 314 92-490 65-391 (400)
188 KOG0109 RNA-binding protein LA 98.6 7.3E-08 1.6E-12 101.1 6.2 72 1034-1114 3-75 (346)
189 PF13893 RRM_5: RNA recognitio 98.5 3.3E-07 7.3E-12 75.8 8.2 55 1050-1110 1-56 (56)
190 TIGR01642 U2AF_lg U2 snRNP aux 98.5 5.1E-07 1.1E-11 111.1 12.9 73 1031-1110 173-257 (509)
191 KOG4205 RNA-binding protein mu 98.5 3.4E-07 7.5E-12 101.4 10.1 82 1032-1114 96-177 (311)
192 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.3E-06 2.8E-11 98.6 14.4 84 1031-1115 403-487 (940)
193 COG4783 Putative Zn-dependent 98.5 3.8E-05 8.1E-10 87.9 25.8 138 387-533 303-440 (484)
194 COG4235 Cytochrome c biogenesi 98.5 3.4E-06 7.5E-11 91.6 16.6 122 79-203 136-260 (287)
195 KOG0550 Molecular chaperone (D 98.5 1.2E-05 2.7E-10 89.3 21.1 235 320-570 55-353 (486)
196 KOG4205 RNA-binding protein mu 98.5 8.7E-08 1.9E-12 106.1 4.4 82 1032-1114 5-86 (311)
197 COG4783 Putative Zn-dependent 98.5 8.5E-06 1.9E-10 93.0 20.3 160 353-538 303-462 (484)
198 PRK15363 pathogenicity island 98.5 3.7E-06 8E-11 83.5 15.0 100 351-451 29-129 (157)
199 PLN03088 SGT1, suppressor of 98.5 2.6E-06 5.7E-11 99.0 15.8 95 396-492 8-102 (356)
200 KOG0144 RNA-binding protein CU 98.4 2.8E-07 6.2E-12 101.6 6.6 84 1031-1115 422-506 (510)
201 KOG3617 WD40 and TPR repeat-co 98.4 0.00012 2.6E-09 87.1 28.0 87 388-489 910-996 (1416)
202 KOG3785 Uncharacterized conser 98.4 0.00056 1.2E-08 74.7 30.6 306 147-568 34-353 (557)
203 KOG0553 TPR repeat-containing 98.4 3.7E-06 8.1E-11 90.6 13.9 98 321-427 88-185 (304)
204 KOG0533 RRM motif-containing p 98.4 2.5E-06 5.4E-11 90.9 12.0 81 1030-1112 80-161 (243)
205 KOG0553 TPR repeat-containing 98.4 5.7E-06 1.2E-10 89.2 14.5 102 366-469 91-192 (304)
206 KOG0124 Polypyrimidine tract-b 98.4 5.7E-07 1.2E-11 96.5 6.8 80 1032-1112 209-289 (544)
207 PF09976 TPR_21: Tetratricopep 98.3 2.4E-05 5.3E-10 78.8 17.4 117 368-487 23-145 (145)
208 COG5191 Uncharacterized conser 98.3 6.4E-07 1.4E-11 95.4 6.0 94 124-220 96-189 (435)
209 KOG4208 Nucleolar RNA-binding 98.3 1.2E-06 2.5E-11 88.5 7.4 78 1033-1111 49-128 (214)
210 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.1E-05 2.3E-10 77.8 14.1 105 427-536 4-111 (119)
211 KOG0110 RNA-binding protein (R 98.3 3.8E-07 8.3E-12 106.9 4.5 81 1032-1113 612-693 (725)
212 KOG4206 Spliceosomal protein s 98.3 1.2E-06 2.7E-11 90.0 7.7 80 1032-1115 8-92 (221)
213 PLN03088 SGT1, suppressor of 98.3 8.9E-06 1.9E-10 94.6 15.8 104 359-464 5-108 (356)
214 KOG0123 Polyadenylate-binding 98.3 1.6E-06 3.4E-11 99.9 8.3 73 1035-1111 78-151 (369)
215 PF08424 NRDE-2: NRDE-2, neces 98.3 3.5E-05 7.6E-10 88.2 19.2 168 377-547 6-209 (321)
216 cd00189 TPR Tetratricopeptide 98.2 9.6E-06 2.1E-10 73.2 11.4 92 359-451 3-94 (100)
217 KOG3785 Uncharacterized conser 98.2 0.0037 8.1E-08 68.5 32.1 143 80-238 37-182 (557)
218 cd00189 TPR Tetratricopeptide 98.2 8.6E-06 1.9E-10 73.5 10.7 98 392-491 2-99 (100)
219 KOG1457 RNA binding protein (c 98.2 1.4E-05 3E-10 81.1 12.5 84 1032-1115 33-120 (284)
220 PRK04841 transcriptional regul 98.2 0.0056 1.2E-07 81.1 40.7 283 320-614 458-764 (903)
221 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.7E-05 5.8E-10 75.0 13.9 99 391-491 3-107 (119)
222 KOG0106 Alternative splicing f 98.2 1.7E-06 3.6E-11 90.1 5.5 73 1034-1115 2-75 (216)
223 PF14938 SNAP: Soluble NSF att 98.2 0.00019 4E-09 81.0 22.2 170 364-568 43-226 (282)
224 KOG0110 RNA-binding protein (R 98.2 3.8E-06 8.3E-11 98.7 8.5 77 1035-1111 517-596 (725)
225 PRK11906 transcriptional regul 98.2 4.9E-05 1.1E-09 87.5 16.9 166 357-530 252-436 (458)
226 KOG0146 RNA-binding protein ET 98.1 1.5E-06 3.3E-11 89.9 4.0 79 1033-1113 19-101 (371)
227 KOG0132 RNA polymerase II C-te 98.1 4.7E-06 1E-10 98.4 7.7 76 1032-1114 420-496 (894)
228 PF12895 Apc3: Anaphase-promot 98.1 7.6E-06 1.6E-10 74.0 7.6 81 114-196 2-84 (84)
229 PF09976 TPR_21: Tetratricopep 98.1 9.9E-05 2.1E-09 74.4 16.5 126 101-234 14-145 (145)
230 PF12895 Apc3: Anaphase-promot 98.1 1.2E-05 2.6E-10 72.6 8.7 81 369-451 2-84 (84)
231 KOG4212 RNA-binding protein hn 98.1 4.7E-06 1E-10 91.9 6.9 73 1031-1109 534-607 (608)
232 PF04733 Coatomer_E: Coatomer 98.1 4.5E-05 9.8E-10 85.7 15.0 204 353-572 63-270 (290)
233 PRK02603 photosystem I assembl 98.1 0.00012 2.6E-09 76.0 17.2 119 388-535 33-154 (172)
234 KOG0109 RNA-binding protein LA 98.1 7E-06 1.5E-10 86.6 7.3 75 1032-1115 77-152 (346)
235 PF13432 TPR_16: Tetratricopep 98.1 1.1E-05 2.5E-10 68.8 7.5 64 104-169 2-65 (65)
236 PF13414 TPR_11: TPR repeat; P 98.1 1.7E-05 3.7E-10 68.6 8.6 67 98-166 2-69 (69)
237 PF14559 TPR_19: Tetratricopep 98.1 1.3E-05 2.7E-10 69.2 7.7 64 114-177 4-67 (68)
238 PRK02603 photosystem I assembl 98.1 9.6E-05 2.1E-09 76.8 15.6 128 87-240 21-153 (172)
239 COG4235 Cytochrome c biogenesi 98.1 8.6E-05 1.9E-09 80.9 15.5 121 371-493 137-260 (287)
240 KOG0226 RNA-binding proteins [ 98.1 5.4E-06 1.2E-10 85.9 5.7 81 1027-1108 184-265 (290)
241 PF13414 TPR_11: TPR repeat; P 98.0 1.8E-05 3.9E-10 68.4 8.2 65 425-490 3-68 (69)
242 KOG1548 Transcription elongati 98.0 1E-05 2.2E-10 87.5 7.6 80 1032-1111 133-219 (382)
243 PRK10153 DNA-binding transcrip 98.0 0.00011 2.4E-09 89.0 17.5 139 352-492 333-485 (517)
244 CHL00033 ycf3 photosystem I as 98.0 5.7E-05 1.2E-09 78.1 12.6 100 390-491 35-151 (168)
245 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 7.8E-05 1.7E-09 86.5 14.8 120 361-485 174-293 (395)
246 COG3898 Uncharacterized membra 98.0 0.025 5.4E-07 63.2 32.8 294 113-491 96-394 (531)
247 PRK11906 transcriptional regul 97.9 0.00011 2.4E-09 84.8 14.4 126 77-203 270-405 (458)
248 KOG0543 FKBP-type peptidyl-pro 97.9 0.00014 2.9E-09 82.0 14.5 147 359-532 211-357 (397)
249 PF14559 TPR_19: Tetratricopep 97.9 2.9E-05 6.3E-10 66.9 7.4 65 368-433 3-67 (68)
250 PF13432 TPR_16: Tetratricopep 97.9 5.2E-05 1.1E-09 64.7 8.3 62 430-492 2-63 (65)
251 KOG4340 Uncharacterized conser 97.9 0.038 8.2E-07 59.6 31.0 80 114-194 23-102 (459)
252 KOG4211 Splicing factor hnRNP- 97.9 3.1E-05 6.8E-10 87.7 8.4 76 1034-1110 104-179 (510)
253 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00023 5E-09 82.6 15.7 123 317-451 172-294 (395)
254 CHL00033 ycf3 photosystem I as 97.9 0.00025 5.4E-09 73.4 14.5 103 354-458 33-152 (168)
255 PRK10153 DNA-binding transcrip 97.9 0.00037 8.1E-09 84.5 18.1 143 384-536 331-488 (517)
256 KOG4454 RNA binding protein (R 97.9 1.3E-05 2.7E-10 81.3 4.3 76 1033-1111 9-85 (267)
257 PRK10803 tol-pal system protei 97.8 0.00022 4.9E-09 78.8 14.2 101 390-492 142-249 (263)
258 KOG1995 Conserved Zn-finger pr 97.8 6.4E-05 1.4E-09 82.5 9.2 85 1031-1115 64-156 (351)
259 PRK10866 outer membrane biogen 97.8 0.0027 5.8E-08 69.7 22.1 165 356-526 32-237 (243)
260 PF14938 SNAP: Soluble NSF att 97.8 0.00048 1E-08 77.7 16.8 179 310-492 31-228 (282)
261 COG5191 Uncharacterized conser 97.8 5.9E-05 1.3E-09 80.8 8.5 96 374-471 91-187 (435)
262 PRK10803 tol-pal system protei 97.8 0.00048 1E-08 76.1 15.8 109 425-538 142-254 (263)
263 PRK15331 chaperone protein Sic 97.8 0.00016 3.5E-09 72.3 10.1 101 95-198 33-133 (165)
264 KOG0123 Polyadenylate-binding 97.7 6.2E-05 1.3E-09 86.9 8.0 73 1034-1113 2-75 (369)
265 PF13525 YfiO: Outer membrane 97.7 0.0031 6.8E-08 67.3 20.5 164 358-547 7-187 (203)
266 COG0457 NrfG FOG: TPR repeat [ 97.7 0.043 9.4E-07 57.7 29.5 224 327-569 36-267 (291)
267 PF12688 TPR_5: Tetratrico pep 97.7 0.00073 1.6E-08 65.1 13.7 94 358-452 3-102 (120)
268 KOG4210 Nuclear localization s 97.7 3.3E-05 7.1E-10 85.8 4.5 81 1033-1114 184-265 (285)
269 PF04733 Coatomer_E: Coatomer 97.7 0.0006 1.3E-08 76.7 14.2 159 366-538 112-273 (290)
270 PF08311 Mad3_BUB1_I: Mad3/BUB 97.7 0.00063 1.4E-08 66.4 12.4 108 118-234 2-126 (126)
271 PRK10866 outer membrane biogen 97.6 0.0035 7.6E-08 68.8 19.7 157 388-547 30-221 (243)
272 PF13371 TPR_9: Tetratricopept 97.6 0.00021 4.5E-09 62.5 8.1 61 114-174 8-68 (73)
273 PRK15331 chaperone protein Sic 97.6 0.001 2.3E-08 66.6 13.7 108 351-461 32-139 (165)
274 KOG4211 Splicing factor hnRNP- 97.6 0.00014 3E-09 82.7 8.4 75 1032-1110 9-83 (510)
275 COG0457 NrfG FOG: TPR repeat [ 97.6 0.012 2.6E-07 62.0 23.4 198 321-533 66-268 (291)
276 KOG4340 Uncharacterized conser 97.6 0.12 2.6E-06 55.9 29.5 409 81-534 26-447 (459)
277 COG4700 Uncharacterized protei 97.6 0.0079 1.7E-07 60.6 19.5 155 368-532 68-228 (251)
278 KOG4849 mRNA cleavage factor I 97.6 0.00014 3.1E-09 78.2 7.7 74 1033-1107 80-156 (498)
279 PF08311 Mad3_BUB1_I: Mad3/BUB 97.6 0.00062 1.3E-08 66.4 11.6 107 334-451 5-125 (126)
280 KOG0543 FKBP-type peptidyl-pro 97.6 0.00093 2E-08 75.4 13.9 145 318-491 212-357 (397)
281 COG4700 Uncharacterized protei 97.5 0.0076 1.6E-07 60.8 18.2 151 323-489 69-222 (251)
282 PF02259 FAT: FAT domain; Int 97.5 0.071 1.5E-06 62.0 30.2 121 352-473 142-305 (352)
283 KOG0151 Predicted splicing reg 97.5 0.00027 5.8E-09 83.1 9.4 83 1030-1112 171-256 (877)
284 PF13428 TPR_14: Tetratricopep 97.5 0.00017 3.7E-09 56.2 5.0 42 136-177 2-43 (44)
285 KOG0890 Protein kinase of the 97.5 0.25 5.4E-06 67.1 36.4 209 351-564 1665-1920(2382)
286 PF12688 TPR_5: Tetratrico pep 97.5 0.0014 3E-08 63.1 12.3 98 391-489 2-104 (120)
287 PF13371 TPR_9: Tetratricopept 97.5 0.0005 1.1E-08 60.0 8.3 65 366-431 5-69 (73)
288 KOG3616 Selective LIM binding 97.4 0.24 5.2E-06 59.2 31.4 32 580-611 994-1025(1636)
289 PF13525 YfiO: Outer membrane 97.4 0.012 2.7E-07 62.8 20.0 110 426-539 6-128 (203)
290 KOG2053 Mitochondrial inherita 97.4 0.72 1.6E-05 57.3 43.7 118 115-233 23-140 (932)
291 KOG2053 Mitochondrial inherita 97.4 0.35 7.6E-06 59.9 33.1 74 317-403 80-158 (932)
292 PF10429 Mtr2: Nuclear pore RN 97.4 0.00051 1.1E-08 67.5 7.3 100 720-824 3-109 (166)
293 COG3898 Uncharacterized membra 97.3 0.16 3.5E-06 57.1 27.0 248 326-607 132-389 (531)
294 KOG3081 Vesicle coat complex C 97.3 0.11 2.4E-06 55.8 24.6 162 428-612 111-273 (299)
295 PF13281 DUF4071: Domain of un 97.3 0.032 7E-07 64.0 22.5 178 355-535 140-339 (374)
296 KOG1855 Predicted RNA-binding 97.3 0.00066 1.4E-08 75.7 8.1 66 1031-1096 229-306 (484)
297 KOG4660 Protein Mei2, essentia 97.3 0.0003 6.4E-09 81.3 5.4 69 1032-1106 74-143 (549)
298 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0046 1E-07 71.6 14.9 69 94-164 70-141 (453)
299 KOG0147 Transcriptional coacti 97.3 0.00012 2.7E-09 84.1 2.2 81 1028-1109 174-254 (549)
300 KOG4234 TPR repeat-containing 97.2 0.0026 5.6E-08 64.7 11.1 96 367-464 106-206 (271)
301 COG4785 NlpI Lipoprotein NlpI, 97.2 0.027 5.8E-07 58.3 18.4 218 312-547 63-282 (297)
302 KOG1585 Protein required for f 97.2 0.03 6.4E-07 59.0 18.9 212 318-548 35-269 (308)
303 cd00531 NTF2_like Nuclear tran 97.2 0.0034 7.4E-08 60.2 11.4 113 725-837 2-123 (124)
304 KOG3616 Selective LIM binding 97.2 0.78 1.7E-05 55.1 31.7 44 114-158 457-500 (1636)
305 smart00777 Mad3_BUB1_I Mad3/BU 97.2 0.0032 6.9E-08 60.7 10.5 91 353-450 19-124 (125)
306 PF04184 ST7: ST7 protein; In 97.2 0.023 4.9E-07 66.0 18.9 166 368-541 180-386 (539)
307 PF06552 TOM20_plant: Plant sp 97.1 0.0042 9E-08 62.9 11.3 86 83-168 9-113 (186)
308 PF13428 TPR_14: Tetratricopep 97.1 0.0011 2.4E-08 51.6 5.5 42 357-398 2-43 (44)
309 KOG3081 Vesicle coat complex C 97.1 0.15 3.4E-06 54.7 22.6 183 353-552 69-258 (299)
310 KOG0890 Protein kinase of the 97.0 1 2.3E-05 61.5 34.7 216 390-613 1629-1888(2382)
311 PF08777 RRM_3: RNA binding mo 97.0 0.0013 2.8E-08 61.8 6.0 69 1033-1108 1-75 (105)
312 KOG4234 TPR repeat-containing 97.0 0.0061 1.3E-07 62.1 11.0 95 397-492 102-200 (271)
313 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0042 9.1E-08 71.9 10.8 70 351-420 70-142 (453)
314 KOG4642 Chaperone-dependent E3 96.9 0.0074 1.6E-07 63.3 11.2 100 115-215 24-125 (284)
315 KOG0120 Splicing factor U2AF, 96.9 0.0007 1.5E-08 79.3 3.9 80 1032-1112 288-368 (500)
316 KOG1585 Protein required for f 96.9 0.17 3.7E-06 53.5 20.7 206 357-604 32-250 (308)
317 KOG0106 Alternative splicing f 96.9 0.0015 3.3E-08 68.4 5.9 67 1032-1107 98-165 (216)
318 KOG4648 Uncharacterized conser 96.8 0.0038 8.2E-08 68.1 8.6 95 396-492 103-197 (536)
319 KOG1941 Acetylcholine receptor 96.8 0.13 2.8E-06 57.1 20.0 239 357-612 84-342 (518)
320 COG1729 Uncharacterized protei 96.8 0.016 3.6E-07 62.7 13.1 93 438-535 154-249 (262)
321 COG1729 Uncharacterized protei 96.8 0.014 3E-07 63.3 12.5 91 400-492 151-247 (262)
322 KOG2041 WD40 repeat protein [G 96.8 1 2.2E-05 54.2 28.1 52 125-179 683-734 (1189)
323 COG4785 NlpI Lipoprotein NlpI, 96.8 0.27 5.8E-06 51.2 20.5 203 370-610 60-266 (297)
324 PF13512 TPR_18: Tetratricopep 96.8 0.042 9E-07 54.1 14.3 65 427-492 12-79 (142)
325 PF13424 TPR_12: Tetratricopep 96.8 0.0041 8.8E-08 55.1 6.9 74 457-531 2-76 (78)
326 PF04059 RRM_2: RNA recognitio 96.7 0.0083 1.8E-07 55.1 8.6 78 1034-1112 2-86 (97)
327 KOG4555 TPR repeat-containing 96.7 0.019 4E-07 54.6 10.9 87 401-489 54-144 (175)
328 smart00386 HAT HAT (Half-A-TPR 96.7 0.0028 6E-08 45.5 4.3 32 149-180 1-32 (33)
329 KOG2796 Uncharacterized conser 96.7 0.19 4E-06 53.7 19.1 137 392-535 179-320 (366)
330 KOG4555 TPR repeat-containing 96.6 0.024 5.2E-07 53.9 11.1 91 366-457 53-146 (175)
331 smart00777 Mad3_BUB1_I Mad3/BU 96.6 0.019 4.2E-07 55.4 11.0 104 120-232 4-124 (125)
332 KOG1456 Heterogeneous nuclear 96.6 0.053 1.1E-06 59.8 15.2 83 1032-1114 30-200 (494)
333 KOG1586 Protein required for f 96.6 0.41 8.9E-06 50.5 20.7 134 393-534 77-228 (288)
334 PF13512 TPR_18: Tetratricopep 96.5 0.032 7E-07 54.9 11.9 67 359-426 13-82 (142)
335 PF02259 FAT: FAT domain; Int 96.5 1.8 3.8E-05 50.3 29.0 121 386-512 142-304 (352)
336 KOG4648 Uncharacterized conser 96.5 0.012 2.7E-07 64.3 9.7 106 432-545 104-209 (536)
337 PF13431 TPR_17: Tetratricopep 96.5 0.0027 5.8E-08 46.4 3.2 32 124-155 2-33 (34)
338 KOG2300 Uncharacterized conser 96.5 2.6 5.7E-05 49.0 38.8 160 367-531 334-515 (629)
339 KOG1586 Protein required for f 96.5 0.21 4.5E-06 52.6 17.7 148 370-535 28-188 (288)
340 KOG0921 Dosage compensation co 96.4 0.004 8.6E-08 75.7 6.0 24 576-599 651-674 (1282)
341 KOG2202 U2 snRNP splicing fact 96.4 0.0064 1.4E-07 64.2 6.2 59 1049-1109 84-144 (260)
342 COG4105 ComL DNA uptake lipopr 96.4 0.39 8.5E-06 51.8 19.7 167 355-547 33-213 (254)
343 PF13424 TPR_12: Tetratricopep 96.3 0.013 2.8E-07 51.8 7.2 64 357-420 6-76 (78)
344 PF02184 HAT: HAT (Half-A-TPR) 96.3 0.0053 1.2E-07 43.3 3.5 29 150-179 2-30 (32)
345 PF06552 TOM20_plant: Plant sp 96.3 0.029 6.3E-07 57.0 10.0 65 372-437 7-81 (186)
346 KOG1457 RNA binding protein (c 96.1 0.0081 1.8E-07 61.6 5.4 64 1032-1100 209-273 (284)
347 KOG1941 Acetylcholine receptor 96.1 1.7 3.7E-05 48.7 23.3 116 120-236 66-191 (518)
348 PRK11634 ATP-dependent RNA hel 96.1 0.035 7.5E-07 69.5 12.0 62 1042-1111 496-561 (629)
349 PF13431 TPR_17: Tetratricopep 96.1 0.0062 1.4E-07 44.5 3.2 32 379-410 2-33 (34)
350 KOG0129 Predicted RNA-binding 96.1 0.015 3.2E-07 67.1 7.7 69 1032-1101 369-438 (520)
351 smart00386 HAT HAT (Half-A-TPR 96.0 0.01 2.3E-07 42.4 4.1 31 116-146 2-32 (33)
352 KOG0530 Protein farnesyltransf 96.0 1.2 2.6E-05 47.9 20.5 212 312-538 41-306 (318)
353 COG5175 MOT2 Transcriptional r 95.9 0.014 3E-07 63.1 6.3 77 1033-1112 114-202 (480)
354 COG4105 ComL DNA uptake lipopr 95.9 1.5 3.3E-05 47.4 21.5 173 337-535 50-238 (254)
355 PF03704 BTAD: Bacterial trans 95.8 0.089 1.9E-06 52.8 11.3 61 137-198 64-124 (146)
356 KOG1190 Polypyrimidine tract-b 95.7 0.096 2.1E-06 58.7 11.9 74 1033-1112 297-372 (492)
357 PF11608 Limkain-b1: Limkain b 95.6 0.067 1.5E-06 46.9 8.0 68 1034-1112 3-76 (90)
358 PF02184 HAT: HAT (Half-A-TPR) 95.6 0.017 3.7E-07 40.9 3.5 30 116-146 2-31 (32)
359 KOG2610 Uncharacterized conser 95.6 0.26 5.7E-06 54.2 14.2 152 329-490 118-277 (491)
360 KOG3973 Uncharacterized conser 95.5 0.029 6.3E-07 61.1 6.8 12 723-734 206-217 (465)
361 PF10300 DUF3808: Protein of u 95.5 0.56 1.2E-05 56.8 18.7 168 351-529 186-375 (468)
362 KOG2796 Uncharacterized conser 95.5 2 4.4E-05 46.2 19.9 140 352-492 165-318 (366)
363 KOG1130 Predicted G-alpha GTPa 95.5 2 4.3E-05 48.8 20.7 25 143-167 25-49 (639)
364 KOG1920 IkappaB kinase complex 95.4 4.2 9.1E-05 52.4 25.8 57 358-417 910-966 (1265)
365 PF13281 DUF4071: Domain of un 95.4 0.63 1.4E-05 53.7 17.4 170 388-568 139-335 (374)
366 PF15008 DUF4518: Domain of un 95.4 0.08 1.7E-06 57.4 9.6 120 718-838 124-259 (262)
367 COG3118 Thioredoxin domain-con 95.4 0.44 9.6E-06 52.3 15.2 122 367-490 145-266 (304)
368 PF04184 ST7: ST7 protein; In 95.4 0.96 2.1E-05 53.0 18.7 163 402-572 180-380 (539)
369 PF05172 Nup35_RRM: Nup53/35/4 95.4 0.052 1.1E-06 50.2 7.1 77 1033-1110 6-89 (100)
370 KOG2066 Vacuolar assembly/sort 95.3 11 0.00023 46.9 28.4 67 115-185 370-438 (846)
371 PF04910 Tcf25: Transcriptiona 95.3 0.58 1.3E-05 54.5 17.3 161 370-537 24-229 (360)
372 KOG1365 RNA-binding protein Fu 95.3 0.011 2.3E-07 65.2 2.8 75 1034-1108 162-238 (508)
373 PF14605 Nup35_RRM_2: Nup53/35 95.3 0.041 8.9E-07 44.7 5.4 52 1034-1093 2-53 (53)
374 PF07719 TPR_2: Tetratricopept 95.3 0.038 8.2E-07 39.9 4.8 33 136-168 2-34 (34)
375 KOG0530 Protein farnesyltransf 95.3 2.6 5.6E-05 45.5 19.9 213 368-596 55-279 (318)
376 KOG2610 Uncharacterized conser 95.3 0.32 7E-06 53.6 13.6 158 368-529 115-275 (491)
377 KOG0985 Vesicle coat protein c 95.2 13 0.00029 47.1 45.3 89 116-215 1090-1178(1666)
378 KOG0129 Predicted RNA-binding 95.1 0.047 1E-06 63.2 7.3 63 1032-1095 258-325 (520)
379 KOG4206 Spliceosomal protein s 94.9 0.082 1.8E-06 55.2 7.8 72 1033-1110 146-219 (221)
380 KOG3763 mRNA export factor TAP 94.9 0.12 2.5E-06 61.1 9.7 114 721-836 338-494 (585)
381 KOG0921 Dosage compensation co 94.9 0.033 7.1E-07 68.2 5.4 11 814-824 890-900 (1282)
382 KOG0105 Alternative splicing f 94.9 0.27 5.9E-06 49.3 10.7 55 1033-1095 115-169 (241)
383 KOG4307 RNA binding protein RB 94.8 0.078 1.7E-06 62.9 7.8 76 1032-1108 865-942 (944)
384 PF07719 TPR_2: Tetratricopept 94.7 0.073 1.6E-06 38.4 5.0 34 500-534 1-34 (34)
385 KOG1190 Polypyrimidine tract-b 94.6 0.022 4.7E-07 63.6 2.8 72 1032-1110 27-101 (492)
386 PF03704 BTAD: Bacterial trans 94.6 0.2 4.3E-06 50.3 9.6 64 357-420 63-126 (146)
387 KOG4642 Chaperone-dependent E3 94.6 0.28 6.2E-06 51.8 10.6 80 371-451 25-104 (284)
388 COG1747 Uncharacterized N-term 94.4 14 0.0003 43.6 27.3 133 357-491 100-236 (711)
389 PF00515 TPR_1: Tetratricopept 94.4 0.072 1.6E-06 38.6 4.3 32 136-167 2-33 (34)
390 PF08952 DUF1866: Domain of un 94.3 0.093 2E-06 51.5 6.1 57 1049-1114 52-108 (146)
391 KOG1538 Uncharacterized conser 94.2 1.2 2.7E-05 53.0 15.6 84 425-527 747-830 (1081)
392 KOG1130 Predicted G-alpha GTPa 94.1 0.58 1.3E-05 53.0 12.5 67 462-529 237-303 (639)
393 KOG0545 Aryl-hydrocarbon recep 94.0 1.4 2.9E-05 47.0 14.1 65 426-491 231-295 (329)
394 KOG1924 RhoA GTPase effector D 93.9 0.29 6.3E-06 59.2 10.1 9 728-736 421-429 (1102)
395 PF08631 SPO22: Meiosis protei 93.8 12 0.00025 42.1 22.6 157 367-529 4-185 (278)
396 KOG2471 TPR repeat-containing 93.7 0.39 8.4E-06 55.5 10.2 152 391-544 207-378 (696)
397 PF10345 Cohesin_load: Cohesin 93.6 27 0.00059 44.0 42.8 446 83-538 39-575 (608)
398 PF10602 RPN7: 26S proteasome 93.5 2.1 4.5E-05 44.6 14.8 86 326-420 15-103 (177)
399 KOG1365 RNA-binding protein Fu 93.5 0.078 1.7E-06 58.7 4.3 78 1034-1111 281-360 (508)
400 COG3118 Thioredoxin domain-con 93.5 6.2 0.00013 43.7 18.6 146 374-531 121-266 (304)
401 KOG1464 COP9 signalosome, subu 93.5 2.3 5E-05 45.8 14.8 194 329-531 42-261 (440)
402 PF00515 TPR_1: Tetratricopept 93.4 0.14 3.1E-06 37.0 4.3 30 391-420 2-31 (34)
403 PF14561 TPR_20: Tetratricopep 93.3 0.74 1.6E-05 42.0 9.7 78 83-162 6-85 (90)
404 KOG1548 Transcription elongati 93.2 0.42 9.1E-06 52.8 9.2 75 1032-1111 264-350 (382)
405 KOG2314 Translation initiation 93.1 0.21 4.6E-06 58.2 7.1 72 1034-1107 59-138 (698)
406 PF05918 API5: Apoptosis inhib 93.0 0.028 6E-07 67.6 0.0 45 358-403 60-104 (556)
407 KOG1538 Uncharacterized conser 93.0 12 0.00025 45.2 20.8 45 403-451 786-830 (1081)
408 KOG0985 Vesicle coat protein c 93.0 35 0.00076 43.6 36.8 35 514-548 1292-1326(1666)
409 PF13181 TPR_8: Tetratricopept 93.0 0.18 3.9E-06 36.4 4.3 31 136-166 2-32 (34)
410 KOG3824 Huntingtin interacting 92.8 0.27 5.8E-06 53.5 7.0 65 367-432 127-191 (472)
411 KOG3152 TBP-binding protein, a 92.8 0.08 1.7E-06 55.9 2.9 70 1034-1104 75-157 (278)
412 PF05918 API5: Apoptosis inhib 92.5 0.036 7.8E-07 66.6 0.0 13 724-736 304-316 (556)
413 PF13174 TPR_6: Tetratricopept 92.5 0.2 4.4E-06 35.7 4.0 31 101-133 2-32 (33)
414 COG2976 Uncharacterized protei 92.4 7 0.00015 40.6 16.1 114 374-491 70-190 (207)
415 KOG2253 U1 snRNP complex, subu 92.2 0.15 3.2E-06 60.9 4.6 66 1033-1108 40-106 (668)
416 KOG0529 Protein geranylgeranyl 92.2 1.6 3.4E-05 50.2 12.3 140 80-220 90-241 (421)
417 KOG3824 Huntingtin interacting 92.0 0.37 8E-06 52.5 6.8 70 396-467 122-191 (472)
418 PF10300 DUF3808: Protein of u 92.0 4.5 9.7E-05 49.1 17.1 183 376-566 177-375 (468)
419 TIGR02246 conserved hypothetic 91.9 2 4.3E-05 41.6 11.7 111 725-835 7-123 (128)
420 KOG0120 Splicing factor U2AF, 91.9 0.36 7.9E-06 57.1 7.2 62 1048-1109 424-488 (500)
421 KOG0545 Aryl-hydrocarbon recep 91.6 3.2 7E-05 44.3 12.9 123 318-466 182-304 (329)
422 PF13174 TPR_6: Tetratricopept 91.5 0.45 9.7E-06 33.8 4.9 32 137-168 2-33 (33)
423 KOG1924 RhoA GTPase effector D 91.4 0.74 1.6E-05 55.8 9.1 11 524-534 311-321 (1102)
424 PF04053 Coatomer_WDAD: Coatom 91.3 1.6 3.5E-05 52.1 12.1 131 369-532 274-404 (443)
425 KOG0115 RNA-binding protein p5 91.2 0.31 6.6E-06 51.8 5.0 76 1034-1111 32-112 (275)
426 KOG2066 Vacuolar assembly/sort 91.1 50 0.0011 41.3 26.8 76 140-222 361-438 (846)
427 KOG1308 Hsp70-interacting prot 91.0 0.19 4E-06 55.9 3.5 86 403-490 127-212 (377)
428 KOG0551 Hsp90 co-chaperone CNS 91.0 8.1 0.00017 43.3 15.8 96 320-420 87-183 (390)
429 KOG2041 WD40 repeat protein [G 91.0 46 0.001 40.8 33.3 128 86-233 680-822 (1189)
430 KOG4307 RNA binding protein RB 90.9 5.6 0.00012 48.0 15.4 79 1032-1112 310-388 (944)
431 PF13176 TPR_7: Tetratricopept 90.9 0.37 8E-06 35.6 3.9 28 137-164 1-28 (36)
432 PF13474 SnoaL_3: SnoaL-like d 90.8 1.4 3.1E-05 42.0 9.2 109 725-835 2-116 (121)
433 PF13181 TPR_8: Tetratricopept 90.7 0.58 1.3E-05 33.7 4.8 30 391-420 2-31 (34)
434 KOG1308 Hsp70-interacting prot 90.6 0.65 1.4E-05 51.8 7.1 117 111-235 124-243 (377)
435 KOG0376 Serine-threonine phosp 90.6 0.41 8.9E-06 55.8 5.8 88 403-492 17-104 (476)
436 KOG2422 Uncharacterized conser 90.5 12 0.00027 44.7 17.6 148 383-533 277-451 (665)
437 KOG4676 Splicing factor, argin 90.2 0.46 1E-05 53.1 5.5 75 1034-1108 8-84 (479)
438 COG2976 Uncharacterized protei 90.1 2.8 6.1E-05 43.5 10.6 98 428-533 92-191 (207)
439 KOG0376 Serine-threonine phosp 90.1 0.44 9.6E-06 55.5 5.6 100 368-469 16-115 (476)
440 COG1747 Uncharacterized N-term 89.9 42 0.0009 39.9 20.8 192 337-544 52-248 (711)
441 KOG1456 Heterogeneous nuclear 89.9 3 6.5E-05 46.6 11.3 75 1032-1112 286-362 (494)
442 COG3947 Response regulator con 89.8 1.4 3.1E-05 48.0 8.7 98 97-196 225-339 (361)
443 PF11207 DUF2989: Protein of u 89.6 15 0.00031 38.7 15.5 79 438-521 120-198 (203)
444 KOG2300 Uncharacterized conser 89.2 53 0.0012 38.8 22.6 134 394-530 11-156 (629)
445 KOG1996 mRNA splicing factor [ 89.2 0.98 2.1E-05 48.6 6.8 62 1048-1109 301-363 (378)
446 PF13176 TPR_7: Tetratricopept 88.8 0.8 1.7E-05 33.7 4.3 29 462-490 1-29 (36)
447 PF10309 DUF2414: Protein of u 87.7 2.5 5.5E-05 35.4 6.9 52 1034-1095 6-61 (62)
448 COG4976 Predicted methyltransf 87.5 0.74 1.6E-05 48.5 4.6 57 367-423 6-62 (287)
449 PF10602 RPN7: 26S proteasome 87.5 6.2 0.00013 41.0 11.6 104 427-532 38-144 (177)
450 PF04910 Tcf25: Transcriptiona 87.4 30 0.00065 40.4 18.3 140 352-491 36-224 (360)
451 KOG0112 Large RNA-binding prot 87.3 0.54 1.2E-05 58.1 4.0 73 1032-1111 454-529 (975)
452 KOG1464 COP9 signalosome, subu 87.3 30 0.00065 37.6 16.2 50 115-164 41-94 (440)
453 PF10345 Cohesin_load: Cohesin 87.2 94 0.002 39.2 49.2 121 116-238 36-170 (608)
454 PF04053 Coatomer_WDAD: Coatom 87.1 14 0.0003 44.3 15.7 131 359-527 298-428 (443)
455 PF09986 DUF2225: Uncharacteri 86.9 7.1 0.00015 41.9 11.9 75 460-535 118-199 (214)
456 smart00028 TPR Tetratricopepti 86.6 1.1 2.4E-05 30.5 3.9 32 136-167 2-33 (34)
457 PF14561 TPR_20: Tetratricopep 86.4 6.6 0.00014 35.8 9.7 48 121-168 8-55 (90)
458 KOG2193 IGF-II mRNA-binding pr 85.7 0.7 1.5E-05 52.0 3.5 71 1035-1112 3-75 (584)
459 KOG2422 Uncharacterized conser 85.3 29 0.00063 41.8 16.3 142 422-569 281-450 (665)
460 COG4976 Predicted methyltransf 84.9 1.1 2.4E-05 47.2 4.3 58 400-459 5-62 (287)
461 COG2909 MalT ATP-dependent tra 84.7 1.3E+02 0.0028 38.5 32.1 202 320-526 464-684 (894)
462 KOG0889 Histone acetyltransfer 84.1 2.6E+02 0.0056 41.5 37.4 198 394-613 2740-2957(3550)
463 KOG0551 Hsp90 co-chaperone CNS 83.7 4.4 9.6E-05 45.2 8.4 94 396-490 87-183 (390)
464 KOG2416 Acinus (induces apopto 83.5 3.1 6.7E-05 49.3 7.5 73 1032-1111 443-520 (718)
465 PRK10941 hypothetical protein; 83.4 8.1 0.00017 43.0 10.6 70 365-435 190-259 (269)
466 COG3629 DnrI DNA-binding trans 82.5 8.3 0.00018 42.9 10.1 62 137-199 155-216 (280)
467 KOG2471 TPR repeat-containing 82.2 8.7 0.00019 44.9 10.2 119 351-470 235-379 (696)
468 KOG0112 Large RNA-binding prot 82.1 0.33 7.3E-06 59.8 -0.8 69 1031-1101 370-439 (975)
469 KOG0116 RasGAP SH3 binding pro 81.9 2 4.4E-05 50.4 5.3 7 827-833 98-104 (419)
470 PF15023 DUF4523: Protein of u 81.6 5.2 0.00011 39.0 7.0 72 1030-1109 83-158 (166)
471 PRK10590 ATP-dependent RNA hel 81.4 10 0.00022 45.9 11.6 22 1034-1060 315-336 (456)
472 PF08631 SPO22: Meiosis protei 81.1 1E+02 0.0022 34.6 19.5 128 436-567 4-150 (278)
473 KOG0889 Histone acetyltransfer 81.0 3.3E+02 0.0071 40.6 26.0 139 353-491 2809-2956(3550)
474 KOG1166 Mitotic checkpoint ser 81.0 22 0.00047 46.4 14.4 141 92-248 8-158 (974)
475 PF14534 DUF4440: Domain of un 80.4 7 0.00015 36.0 7.8 100 726-830 3-107 (107)
476 KOG3783 Uncharacterized conser 80.4 1.4E+02 0.0031 36.0 21.8 71 463-533 452-523 (546)
477 KOG0529 Protein geranylgeranyl 80.2 26 0.00055 40.7 13.1 98 83-181 47-156 (421)
478 KOG1550 Extracellular protein 79.9 86 0.0019 39.0 19.1 146 373-531 229-394 (552)
479 PF09986 DUF2225: Uncharacteri 79.8 15 0.00032 39.6 10.7 109 370-511 91-211 (214)
480 PF08675 RNA_bind: RNA binding 79.4 7 0.00015 34.7 6.5 52 1034-1095 10-61 (87)
481 COG3629 DnrI DNA-binding trans 79.1 7.4 0.00016 43.3 8.3 50 115-164 167-216 (280)
482 KOG4507 Uncharacterized conser 78.9 10 0.00022 45.3 9.5 94 398-492 615-708 (886)
483 KOG1550 Extracellular protein 78.8 1.5E+02 0.0033 36.9 20.7 215 329-570 308-541 (552)
484 COG5187 RPN7 26S proteasome re 78.5 1E+02 0.0022 34.2 16.0 101 135-236 115-221 (412)
485 PRK10941 hypothetical protein; 78.3 19 0.0004 40.2 11.3 69 399-469 190-258 (269)
486 PF12893 Lumazine_bd_2: Putati 77.9 22 0.00048 33.9 10.5 101 726-836 8-116 (116)
487 PF09613 HrpB1_HrpK: Bacterial 77.3 73 0.0016 32.4 13.9 110 394-531 14-123 (160)
488 KOG4285 Mitotic phosphoprotein 77.2 8.4 0.00018 42.1 7.7 63 1034-1104 198-260 (350)
489 smart00028 TPR Tetratricopepti 76.4 4.1 9E-05 27.4 3.8 31 502-533 3-33 (34)
490 PF00244 14-3-3: 14-3-3 protei 76.1 66 0.0014 35.2 14.6 53 476-529 142-197 (236)
491 PF11767 SET_assoc: Histone ly 74.5 14 0.00031 31.4 6.9 56 1043-1108 10-66 (66)
492 PF09797 NatB_MDM20: N-acetylt 74.3 1.8E+02 0.0039 34.0 22.1 42 374-415 201-242 (365)
493 KOG2135 Proteins containing th 74.2 2 4.4E-05 49.6 2.3 74 1032-1112 371-445 (526)
494 PF12862 Apc5: Anaphase-promot 74.2 25 0.00053 32.3 9.2 33 461-493 42-74 (94)
495 KOG2068 MOT2 transcription fac 73.7 1.2 2.5E-05 49.6 0.3 79 1034-1113 78-163 (327)
496 KOG1920 IkappaB kinase complex 73.6 3.1E+02 0.0068 36.4 26.0 292 184-608 771-1066(1265)
497 KOG3262 H/ACA small nucleolar 73.2 14 0.0003 37.6 7.5 124 1043-1166 84-215 (215)
498 KOG0687 26S proteasome regulat 73.2 1E+02 0.0022 34.8 14.7 133 103-236 70-210 (393)
499 KOG4507 Uncharacterized conser 73.1 9.1 0.0002 45.7 7.2 109 397-512 614-722 (886)
500 KOG3293 Small nuclear ribonucl 72.6 6 0.00013 37.0 4.5 50 1110-1160 85-134 (134)
No 1
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=100.00 E-value=9.9e-55 Score=494.32 Aligned_cols=543 Identities=41% Similarity=0.695 Sum_probs=459.7
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAV 162 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL 162 (1169)
....++|..+..+..|+++|+.|+...... ..++.+|.+|+.+|..||.|++||.+||+++.+.|+.+++.++|+|||
T Consensus 29 p~~~~~we~~~~~~~~f~~wt~li~~~~~~--~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv 106 (577)
T KOG1258|consen 29 PDSLDYWEILSNDSLDFDAWTTLIQENDSI--EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGV 106 (577)
T ss_pred cchhhHhhccccchhcccchHHHHhccCch--hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445679999999999999999999988774 477999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH
Q 001060 163 QGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD 242 (1169)
Q Consensus 163 ~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~ 242 (1169)
+.+|.|+++|+.|+.|.....++++..|..|++|+.++|.+|.|+.||+.||+||..++.+.++..+|+|+|++|..++.
T Consensus 107 ~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~ 186 (577)
T KOG1258|consen 107 QAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN 186 (577)
T ss_pred HhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHH-HHHHHHHHHH
Q 001060 243 RYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE-ELEKYIAVRE 321 (1169)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~k~i~~~~ 321 (1169)
.+|..|+.+.+++++..+...+++..+...+-.. +.....+ ...+....+++.+..+... .++.. .+.+++..+.
T Consensus 187 ~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~--~~~~~~~-~~~e~~~~~v~~~~~~s~~-l~~~~~~l~~~~~~~~ 262 (577)
T KOG1258|consen 187 RHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER--SKITHSQ-EPLEELEIGVKDSTDPSKS-LTEEKTILKRIVSIHE 262 (577)
T ss_pred HHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh--hhccccc-ChhHHHHHHHhhccCccch-hhHHHHHHHHHHHHHH
Confidence 9999999999999999999999987766544421 0000000 0111122233333333322 23333 6678889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 001060 322 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 401 (1169)
Q Consensus 322 ~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~ 401 (1169)
.+|+...+..++++.||..|+||||||+|+++.++.+|+.|++|.++.|+++++..+|+||++.|.+|.++|++|+.+|+
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~ 342 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWME 342 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001060 402 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 481 (1169)
Q Consensus 402 ~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~ 481 (1169)
..|+.+-|..++.++++++.++.+.++++++.|++.+|+++.|+.+|+++..++ |+...+-+.++.+++|+|+.+.+..
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhH
Confidence 999999999999999999999999999999999999999999999999996666 9999999999999999999999985
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHH
Q 001060 482 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLV 561 (1169)
Q Consensus 482 iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~ 561 (1169)
..+......++++.......++++++++.+...++.+.|+.++..++.+.|++..+|..++.|+...+...+.+.+..++
T Consensus 422 ~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~ 501 (577)
T KOG1258|consen 422 KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPID 501 (577)
T ss_pred HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHH
Confidence 33333334445555566778899999999999999999999999999999999999999999999988666677777776
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhh
Q 001060 562 DKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAK 638 (1169)
Q Consensus 562 eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~ 638 (1169)
...+....+.....+..+ +|++|.+.+|+.....+...++.+.|..++.....+....+..-..|++|...
T Consensus 502 ~~~~~~~~~~~~~~~~~~------k~~ef~e~~g~~~~~~~~~~~~l~~~l~q~~~~~~~~~~~~s~~~~d~~~~~~ 572 (577)
T KOG1258|consen 502 WKELKMLIDFDDSRSSTD------KYIEFLEWFGIDHKGAQDERPHLKNFLIQRPDNFKKMDTLESRFTNDPSKEAL 572 (577)
T ss_pred HHHHhhhccccccccchH------HHHHHHHhccchhHhHhhchHHHHHHHhhccchhcccchHHHHhcCChhhhcc
Confidence 666554322221122222 29999999999999999999999999776544333333334444445555433
No 2
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-55 Score=497.30 Aligned_cols=388 Identities=36% Similarity=0.581 Sum_probs=233.6
Q ss_pred CCCCcchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCccc-chhhHHHHHHHHhcCCCcce--eEeeeeccccC
Q 001060 716 PPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTE-SASSMLDIHSLVISLNFTAI--EIKTINSLGSW 792 (1169)
Q Consensus 716 ~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~-~~~~~~~I~~~~~~l~~~~~--~i~~~d~q~~~ 792 (1169)
+...|+.||+.||+|||++|++.|+.||+||.++|+++|.+.+... .+++.++|+++|++|+|..| +|.++|+|.|+
T Consensus 9 ~~~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~S~ 88 (419)
T KOG0116|consen 9 PVPTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQASL 88 (419)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhhhc
Confidence 4467889999999999999999999999999999999998876654 78889999999999999987 79999999999
Q ss_pred CCceEEEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEeccCCCccCCCCCCCcCCccCCCCCCCCCCCCCCCc
Q 001060 793 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGL 872 (1169)
Q Consensus 793 ~~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1169)
++||+|+|||.|++++. +.|+|+|||||+||+++|||+||||||||+++..+.. .. ++. .+.++ .
T Consensus 89 ~~GvvI~VtG~lt~~~~-~rRkF~QtFfLapq~~~yfVlNDiFRfvde~~~~e~~-----~~--~vp----~~~~~---~ 153 (419)
T KOG0116|consen 89 EKGVVIMVTGYLTNKDG-PRRKFSQTFFLAPQEKGYFVLNDIFRFVDEEFEPEAN-----TD--EVP----EANPA---V 153 (419)
T ss_pred cCCeEEEEEEEEEeCCC-cceEEEEEEEEeecCCceEEEechhhhcccccccccc-----cc--cCC----CCCcc---e
Confidence 99999999999999997 7999999999999999999999999999988621111 00 000 00000 0
Q ss_pred CCCCcchhhhhhccccccccCCccCCCCCCCCCCC-CCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001060 873 AASDYVLEEEAREYVSSVHIEDDATDNYSLPEQQQ-DEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEP 951 (1169)
Q Consensus 873 ~~~~~~~ee~~~e~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~ 951 (1169)
.......+ ...+.+.+.+.+++.. +.... ...++...+..+ ..++.+++.... ..+... |.. +..+.
T Consensus 154 ~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~V~~~~~~~~~~~-~~~~~~ee~v~~-~~~~~~--p~~--~~~~~ 221 (419)
T KOG0116|consen 154 VVSVEKAS-QLVEAVVESEPEPEPE-----PKAEDEVEVPEEATVEDE-AKEKTKEELVIQ-QTVSEA--PAA--PQGDA 221 (419)
T ss_pred eecccccc-cccccccccCCCCccc-----ccccCceecccccccccc-ccccCchhhccc-ccccCC--Ccc--ccccc
Confidence 00000000 0000000000000000 00000 000000000000 011111100000 000000 111 13456
Q ss_pred CccchhhhhhhcccCCCCccc-cCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 001060 952 QRKTYASILRVSKSQSTSFVA-TQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDE 1030 (1169)
Q Consensus 952 ~p~s~As~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~p~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1169)
++++||+++..+....++... ..|.. . .+..+|...|.++... .++.| .... .......-...
T Consensus 222 ~~~s~asv~~~~~~~~~~~~~~~~p~~--~---~~~~~p~~~~~~~~~s--~~~~p---~~~~------~~~n~~~~~~~ 285 (419)
T KOG0116|consen 222 PKKSFASVVKVLKKSAAVQQSKGSPPQ--I---QPQQQPSTKPQAERQS--KPPSP---VRES------KSGNSNNQEPR 285 (419)
T ss_pred cchhhhhhhhhcccccccceeccCCCc--c---ccccCCccCcchhhcc--CCCCc---cccc------cccccCCccee
Confidence 799999998876654433111 11111 0 0000011111100000 00000 0000 00000111122
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
..+.+|||+|||++++.++|+++|++||.|+..+|.++.+. ++..|||||+|.+.++++.||.+++..|+|++|.|+++
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~-~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPG-GKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccC-CCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 34566999999999999999999999999999999988743 44459999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001060 1111 RPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRG 1147 (1169)
Q Consensus 1111 r~~~~~~~rg~~~g~grg~~~~~~~~g~~ggrg~grg 1147 (1169)
+++.++.+..+++.++++|++++++|+++++||++|+
T Consensus 365 ~~~~~g~~~~~~~~~~~~g~~~~~gr~~~~~~gg~~~ 401 (419)
T KOG0116|consen 365 RPGFRGNGNNRSGRGNRGGGRGPGGRGRGGGRGGGRG 401 (419)
T ss_pred cccccccccCcccccCCCCCCCCCCCCCCCCCCCCcC
Confidence 9865543221112233444555555555554444444
No 3
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=100.00 E-value=7.4e-53 Score=466.10 Aligned_cols=480 Identities=21% Similarity=0.349 Sum_probs=416.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001060 89 WNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 89 ~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 168 (1169)
++.|+.||+|.++|..|+++++. ..++++|..||+++..||....+|+.|+..|++.++|+.++++|.|||... .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt---~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-Ln 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQT---QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LN 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHcc---CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hh
Confidence 67799999999999999999986 399999999999999999999999999999999999999999999999987 89
Q ss_pred HHHHHHHHHHHHhhcCCHHH----HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHh
Q 001060 169 VDIWLHYCIFAINTYGDPET----IRRLFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRILE 235 (1169)
Q Consensus 169 ~~lw~~y~~~~~~~~~~~e~----Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~---------~~~~~~a~~iY~r~L~ 235 (1169)
+|||.+|+.+..++.++... ..+.|+.++..+|+|+.|..||+.|+.|++. +++++.+|++|+|+|.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999988776544 4556999999999999999999999999875 4689999999999999
Q ss_pred cchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001060 236 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315 (1169)
Q Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k 315 (1169)
+|+.+++.+|+.|..|++..+. -.-+|
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~-----------------------------------------------------~tarK 192 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINI-----------------------------------------------------ITARK 192 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHH-----------------------------------------------------HHHHH
Confidence 9999999999999999544320 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC----hhcHHHHHHHHHHHHHcCC--------hHHHHHHHHHHH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS----VTELENWHNYLDFIERDGD--------FNKVVKLYERCL 383 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~----~~~~~~W~~yl~~~~~~gd--------~~~a~~lyeraL 383 (1169)
++.-+...|.++....+-+...-++++|..+.|+|.. -.++++|+++|+|+++++- ..|+...|++||
T Consensus 193 ~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~l 272 (656)
T KOG1914|consen 193 FIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCL 272 (656)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHH
Confidence 5566666677777666777778888899888888865 4689999999999976542 248999999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC---HHHHHH
Q 001060 384 IACANYPEYWIRYVLCMEASGS--------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD---IDGARA 446 (1169)
Q Consensus 384 ~~~~~~~e~W~~~a~~l~~~g~--------------~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~---~~~A~~ 446 (1169)
.+.++++++|+.++.|+...++ .+++.++|+|++......+..+++.++.+++..-+ .+....
T Consensus 273 l~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~ 352 (656)
T KOG1914|consen 273 LYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHE 352 (656)
T ss_pred HHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHH
Confidence 9999999999999999988777 68999999999998878889999999999988666 778888
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 447 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 526 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~k 526 (1169)
+|++++....-+..-+|+.+.++.+|...++.||.+|.+|.+.... .-++|+.-|.+++.+.+|.+-|.+||+-
T Consensus 353 ~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~------~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 353 IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT------RHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC------cchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 8888743334444557999999999999999999999999886532 2368888888888999999999999999
Q ss_pred HhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001060 527 SLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDR 606 (1169)
Q Consensus 527 Al~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R 606 (1169)
+|+++++++.+.+.|++|...+++.. ++|.+|||++.+. +++++.++||++||+||..+||+.++.++++|
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~---N~R~LFEr~l~s~------l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDN---NARALFERVLTSV------LSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcch---hHHHHHHHHHhcc------CChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999999999999999998754 4899999999972 77899999999999999999999999999999
Q ss_pred HHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCCC
Q 001060 607 HARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPS 645 (1169)
Q Consensus 607 ~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~~ 645 (1169)
+.++|+.. .+.+. .+....+|||+++++|||+..
T Consensus 498 ~~~af~~~---qe~~~--~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 498 RFTAFPAD---QEYEG--NETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred HHHhcchh---hcCCC--ChHHHHHHHHhhcccccccHH
Confidence 99999853 12222 356788999999999999976
No 4
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.2e-42 Score=376.17 Aligned_cols=484 Identities=21% Similarity=0.300 Sum_probs=383.7
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------------------------------hhhHHHHHHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA--------------------------------QDNIVKIRRVYDAF 127 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~--------------------------------~~~i~~Ar~~ye~~ 127 (1169)
++.-+-.-+++||..+-.+...|..++.+-.+.. =||+.-||++|++.
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3445555666677777667777766666654421 04666677777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCH
Q 001060 128 LAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSF 207 (1169)
Q Consensus 128 l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~ 207 (1169)
+...|+ ...|..|++++++.++++.|+.+|+|.|..|| ++.-|+.|++|+. ..|+...+|.+|++|++.+|.|....
T Consensus 168 ~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~-k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 168 MEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEE-KHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 777775 36677777777777778888888888888885 7888999999988 78888999999999999999888888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhc
Q 001060 208 PLWDKYIEYEYMQQEWSRVAMIYTRILEN-PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKA 286 (1169)
Q Consensus 208 ~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~ 286 (1169)
.|...++.||..++++++|+.||+-+|.. |.+.-..+|..|..|+....... ..|+++.-
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~--gIEd~Iv~----------------- 305 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE--GIEDAIVG----------------- 305 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh--hhHHHHhh-----------------
Confidence 89999999999999999999999999986 66677888888888765432111 11333210
Q ss_pred cccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh-----cHHHHHH
Q 001060 287 NEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-----ELENWHN 361 (1169)
Q Consensus 287 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~-----~~~~W~~ 361 (1169)
..--++.+.+..++++.+.|.+|+... ...+..++.+..||++|. .|+|...+ -.-+|.+
T Consensus 306 -------KRk~qYE~~v~~np~nYDsWfdylrL~----e~~g~~~~Ire~yErAIa----nvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 306 -------KRKFQYEKEVSKNPYNYDSWFDYLRLE----ESVGDKDRIRETYERAIA----NVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred -------hhhhHHHHHHHhCCCCchHHHHHHHHH----HhcCCHHHHHHHHHHHHc----cCCchhHHHHHHHHHHHHHH
Confidence 111122233456778999999997554 334567778889999997 36775533 2356666
Q ss_pred HHHHHH-HcCChHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001060 362 YLDFIE-RDGDFNKVVKLYERCLIACANY----PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436 (1169)
Q Consensus 362 yl~~~~-~~gd~~~a~~lyeraL~~~~~~----~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e 436 (1169)
|+-|++ ...|.++++.+|+.||.+.|+. ..+|+.||.+..++.++..|+.++..||..+ |+ ..++-.|..++.
T Consensus 371 YalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c-PK-~KlFk~YIelEl 448 (677)
T KOG1915|consen 371 YALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC-PK-DKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC-Cc-hhHHHHHHHHHH
Confidence 666653 5689999999999999999965 4799999999999999999999999999988 43 467777889999
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH-HHHHHHHHHHHHhC
Q 001060 437 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM-LYAQYSRFLHLVSR 515 (1169)
Q Consensus 437 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~-l~~~~a~~~~~~~g 515 (1169)
+.+++|..|++|++- ++..|.++.+|.+++.++..+|+.++|+.+|+-|+... ..++|+ ||-.|++|+.. .|
T Consensus 449 qL~efDRcRkLYEkf-le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp-----~ldmpellwkaYIdFEi~-~~ 521 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKF-LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP-----ALDMPELLWKAYIDFEIE-EG 521 (677)
T ss_pred HHhhHHHHHHHHHHH-HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc-----ccccHHHHHHHhhhhhhh-cc
Confidence 999999999999996 89999999999999999999999999999999999876 245565 59999999987 99
Q ss_pred CHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC--Ch-----------hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHH
Q 001060 516 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQS--SP-----------KQIDFLEQLVDKFLMSNSDSPSTANAAEREE 582 (1169)
Q Consensus 516 ~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~--~~-----------~~~~~~r~l~eral~~~~~~~~~l~~~~~~~ 582 (1169)
.+++||.+|++.|+..++.+ +|..|+.||.+.. .. +.+..+|.+|++|.....+.. +++.|..
T Consensus 522 E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~---~KeeR~~ 597 (677)
T KOG1915|consen 522 EFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST---PKEERLM 597 (677)
T ss_pred hHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC---cHHHHHH
Confidence 99999999999999998877 9999999999652 11 147789999999988765543 4789999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 583 LSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 583 i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
|++.|++||..||+..+++.|..++.+.++.
T Consensus 598 LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKK 628 (677)
T KOG1915|consen 598 LLEAWKNMEETFGTEGDVERVQSKMPKKVKK 628 (677)
T ss_pred HHHHHHHHHHhcCchhhHHHHHHhccHHHHh
Confidence 9999999999999999999999998887764
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.5e-38 Score=341.48 Aligned_cols=460 Identities=19% Similarity=0.238 Sum_probs=384.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001060 85 EDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG 164 (1169)
Q Consensus 85 ~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~ 164 (1169)
-+.|+..|+.|-.+...|..+++.-+. ++++.+||++|+++|..+-.+..+|++||+++++.++...|+.+++|++..
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEes--q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEES--QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 345788999999999999999999887 579999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHH
Q 001060 165 VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRY 244 (1169)
Q Consensus 165 ~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~ 244 (1169)
.|.-..+|+.|+-++. .+|+..-||++|+|-+..-| ....|..||+||+..+++++|+.||.|.+-..++ -.-
T Consensus 137 lPRVdqlWyKY~ymEE-~LgNi~gaRqiferW~~w~P----~eqaW~sfI~fElRykeieraR~IYerfV~~HP~--v~~ 209 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEE-MLGNIAGARQIFERWMEWEP----DEQAWLSFIKFELRYKEIERARSIYERFVLVHPK--VSN 209 (677)
T ss_pred cchHHHHHHHHHHHHH-HhcccHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc--HHH
Confidence 9999999999988877 89999999999999998655 3589999999999999999999999999876433 345
Q ss_pred HHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH
Q 001060 245 FSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY 324 (1169)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y 324 (1169)
|..|..|+..+..-. ..+.+|...-+..++ .+.-..+...-...=
T Consensus 210 wikyarFE~k~g~~~---------~aR~VyerAie~~~~--------------------------d~~~e~lfvaFA~fE 254 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVA---------LARSVYERAIEFLGD--------------------------DEEAEILFVAFAEFE 254 (677)
T ss_pred HHHHHHHHHhcCcHH---------HHHHHHHHHHHHhhh--------------------------HHHHHHHHHHHHHHH
Confidence 677777766654221 123344332222221 111122222333333
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhccCCHHHHHHH
Q 001060 325 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN--------KVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 325 ~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~--------~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
...++++.++-.|.-+|.. -|.+ ...+++..|..|+.+-||.. +-..-|+..+..+|.+.+.|+.|
T Consensus 255 e~qkE~ERar~iykyAld~-----~pk~-raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 255 ERQKEYERARFIYKYALDH-----IPKG-RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHh-----cCcc-cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 4568899999999999873 1111 12578999999999999864 34567999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhcc--------ChHHHHHHHHHHH-HcCCHHHHHHHHHHHhhhcCCC----hHHHH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKR--------LPEIHLFAARFKE-QNGDIDGARAAYQLVHTETSPG----LLEAI 463 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~--------~~~l~~~~a~~~e-~~g~~~~A~~~~~~a~~~~~P~----~~~~~ 463 (1169)
..+.+..|+.+..+++|+||+...+|- .--+|+.|+.+++ ...+.+.++++|+.+ +++.|. ...+|
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~-l~lIPHkkFtFaKiW 407 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC-LDLIPHKKFTFAKIW 407 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HhhcCcccchHHHHH
Confidence 999999999999999999999877653 3458899998876 478999999999997 788887 67899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHH
Q 001060 464 IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 543 (1169)
Q Consensus 464 ~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~ 543 (1169)
+.++.++.|+.++..|+.++-.||...|. +.++-.|+.++.+ +++++..|++|++-|+..|.+...|..|+.
T Consensus 408 lmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElq-L~efDRcRkLYEkfle~~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 408 LMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQ-LREFDRCRKLYEKFLEFSPENCYAWSKYAE 479 (677)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHH-HhhHHHHHHHHHHHHhcChHhhHHHHHHHH
Confidence 99999999999999999999999998864 4588899999988 999999999999999999999999999999
Q ss_pred hHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 544 FESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 544 ~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
||.++|+ .+.+|.+|+-|+.... .+..+.+|..||+||-..|..+....+|+|..++-+.
T Consensus 480 lE~~Lgd---tdRaRaifelAi~qp~-------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 480 LETSLGD---TDRARAIFELAISQPA-------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHHhhh---HHHHHHHHHHHhcCcc-------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 9999998 6779999999988643 2455679999999999999999999999999988654
No 6
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=314.40 Aligned_cols=457 Identities=17% Similarity=0.241 Sum_probs=363.3
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
+...+-+|+..++.||.|.-+|+.|+++++. ++..++.|+.|++++.-||.-..+|..|+.-|+..++|..++.+|-|
T Consensus 24 i~~D~lrLRerIkdNPtnI~S~fqLiq~~~t--q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 24 IHGDELRLRERIKDNPTNILSYFQLIQYLET--QESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred CCchHHHHHHHhhcCchhHHHHHHHHHHHhh--hhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 4455569999999999999999999999998 56999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHHHH
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYG-----DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRV 226 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~-----~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~---------~~~~~~a 226 (1169)
||... .+++||..|+.+...... .--.+.+.|+..+..++.++.+..+|+.|..|+.. +++++.+
T Consensus 102 CL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 102 CLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred HHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 99986 899999999999984432 23456778999999999999999999999999864 5789999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccC
Q 001060 227 AMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG 306 (1169)
Q Consensus 227 ~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~ 306 (1169)
|.+|+|+|..|+.+++.+|+.|..|+.+.+. + +
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~--~-T-------------------------------------------- 213 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNK--I-T-------------------------------------------- 213 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHH--H-H--------------------------------------------
Confidence 9999999999999999999999998654210 0 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc----CCCChhcHHHHHHHHHHHHHcC-----C--hHHH
Q 001060 307 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHV----KPLSVTELENWHNYLDFIERDG-----D--FNKV 375 (1169)
Q Consensus 307 ~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v----~pl~~~~~~~W~~yl~~~~~~g-----d--~~~a 375 (1169)
-+|++.-...+|..+...-+.+..+-+++++.-|-. .-.....-..|.++|+|+.+.| + ..++
T Consensus 214 ------arKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi 287 (660)
T COG5107 214 ------ARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRI 287 (660)
T ss_pred ------HHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHH
Confidence 011222122223322222222333333333211000 0011123356999999997653 2 3488
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--
Q 001060 376 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-- 453 (1169)
Q Consensus 376 ~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-- 453 (1169)
-.+|++++...+..+++|+.|..|+...++-+.|+...+|++ +.+|.+++.++.+++...+-++.+.+|+++..
T Consensus 288 ~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~----~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 288 HYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGI----EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc----cCCCchheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999998888887 45677999999999999999888888886410
Q ss_pred ---------------hcCC------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001060 454 ---------------ETSP------------GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 506 (1169)
Q Consensus 454 ---------------~~~P------------~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~ 506 (1169)
.-+| ....+|+-+.+...|....+.|+.+|.++....- ..+++|+..
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~------~~h~vyi~~ 437 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI------VGHHVYIYC 437 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC------CCcceeeeH
Confidence 0112 1223577788888888889999999999887641 124688888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHH
Q 001060 507 SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCV 586 (1169)
Q Consensus 507 a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~ 586 (1169)
|.+++.+.|+..-|.+||+-+|.++|++..+...|..|....++.. .+|.+||.++..- ...+.++||+.
T Consensus 438 A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~---naraLFetsv~r~-------~~~q~k~iy~k 507 (660)
T COG5107 438 AFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEE---NARALFETSVERL-------EKTQLKRIYDK 507 (660)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHH---HHHHHHHHhHHHH-------HHhhhhHHHHH
Confidence 8888888999999999999999999999999999999999998854 4899999877643 22355789999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 587 FLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 587 ~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
||+||..+|++..+-.+++|..+++|.
T Consensus 508 mi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 508 MIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 999999999999999999999999985
No 7
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=2.2e-30 Score=292.09 Aligned_cols=467 Identities=17% Similarity=0.204 Sum_probs=339.4
Q ss_pred cCCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------
Q 001060 75 DGSVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR------- 147 (1169)
Q Consensus 75 ~~~~~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~------- 147 (1169)
+++..++.++-..|....+.||.+..+|..-+++.+.. |++..|+.+..+..+..|.+.+.|+.-+.+.--
T Consensus 261 ~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEva--gKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vv 338 (913)
T KOG0495|consen 261 GGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVA--GKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVV 338 (913)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHh--hHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHH
Confidence 34455677777888889999999999999999988874 578878777777777766666666655443200
Q ss_pred ----------------h----CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC----
Q 001060 148 ----------------V----GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD---- 203 (1169)
Q Consensus 148 ----------------~----~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d---- 203 (1169)
. .+...-..+++++|+.+|.|+.||..-..++ +.+.||.+++||++.+++.
T Consensus 339 A~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE-----~~~darilL~rAveccp~s~dLw 413 (913)
T KOG0495|consen 339 ANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELE-----EPEDARILLERAVECCPQSMDLW 413 (913)
T ss_pred HHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhcc-----ChHHHHHHHHHHHHhccchHHHH
Confidence 0 0111112233344444444444443333322 2344555555555554441
Q ss_pred -----------------------CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----chhhHHHHHHHHHHHHhcC
Q 001060 204 -----------------------YLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-----PIQQLDRYFSSFKEFAASR 255 (1169)
Q Consensus 204 -----------------------~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-----p~~~~~~~~~~~~~~~~~~ 255 (1169)
+.+..||..-..+|+.+|+.+.+.+|..|+|.. -..+.++++......+...
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 002344555555555555555555555555432 1123444444443332211
Q ss_pred CCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 256 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKII 335 (1169)
Q Consensus 256 ~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~ 335 (1169)
. ..+. +++ -..++.. +..+.+....++ .-.+.+.+.+-++-++.
T Consensus 494 s---v~Tc-QAI--i~avigi-----------------------------gvEeed~~~tw~-~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 494 S---VITC-QAI--IRAVIGI-----------------------------GVEEEDRKSTWL-DDAQSCEKRPAIECARA 537 (913)
T ss_pred C---hhhH-HHH--HHHHHhh-----------------------------ccccchhHhHHh-hhHHHHHhcchHHHHHH
Confidence 0 0000 010 0011111 001111111122 22345666677888888
Q ss_pred HHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001060 336 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 415 (1169)
Q Consensus 336 ~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~r 415 (1169)
+|-.+|+ ..|....+|...+.|++..|..+....++++++..||..+.+|++|+.-....|+.-.|+.++.+
T Consensus 538 Vya~alq--------vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 538 VYAHALQ--------VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHh--------hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 8999998 78888899999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001060 416 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 495 (1169)
Q Consensus 416 Al~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~ 495 (1169)
|++.+ |++.+||++...++.++..++.||.+|.++ .. ......+|++.+.+++-+++.++|+.++++||+.+|
T Consensus 610 af~~~-pnseeiwlaavKle~en~e~eraR~llaka-r~-~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp---- 682 (913)
T KOG0495|consen 610 AFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKA-RS-ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFP---- 682 (913)
T ss_pred HHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHH-hc-cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC----
Confidence 99988 889999999999999999999999999998 33 344678999999999999999999999999999985
Q ss_pred cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCC
Q 001060 496 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTA 575 (1169)
Q Consensus 496 ~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l 575 (1169)
+.+.+|..++.++.. .++++.||..|..+++++|++..||..++.+|...+. +-.+|.+++|+.-.+|++.
T Consensus 683 --~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~---~~rAR~ildrarlkNPk~~--- 753 (913)
T KOG0495|consen 683 --DFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ---LVRARSILDRARLKNPKNA--- 753 (913)
T ss_pred --chHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc---hhhHHHHHHHHHhcCCCcc---
Confidence 557899999999877 8999999999999999999999999999999999876 5679999999999999887
Q ss_pred CHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 576 NAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 576 ~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
.+|..-+.+|...|+.+.+..+-.|+.+-+|..
T Consensus 754 ------~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 754 ------LLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred ------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 599999999999999999999999999888764
No 8
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=8e-30 Score=287.66 Aligned_cols=497 Identities=16% Similarity=0.224 Sum_probs=357.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CCHHHHHHHHH
Q 001060 88 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV--------GSMDKVVEVYE 159 (1169)
Q Consensus 88 l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~--------~~~e~A~~l~e 159 (1169)
|+.-|-.||+++..|..+|..-.. ....+..-+|+++|+.+|.++.+|..|...-..+ ..|+.+-.+|+
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~---sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~e 92 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAG---SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFE 92 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHcc---CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Confidence 445588999999999999998554 4778899999999999999999999999544333 23889999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001060 160 RAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 239 (1169)
Q Consensus 160 raL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~ 239 (1169)
|||...-..+.+|+.||+|++ ..++....|.+|++||...+..-+ ..||..|+.|..+.+-.+-+.++|+|.|+..+.
T Consensus 93 r~lv~mHkmpRIwl~Ylq~l~-~Q~~iT~tR~tfdrALraLpvtqH-~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~ 170 (835)
T KOG2047|consen 93 RCLVFMHKMPRIWLDYLQFLI-KQGLITRTRRTFDRALRALPVTQH-DRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE 170 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHH-hcchHHHHHHHHHHHHHhCchHhh-ccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH
Confidence 999976678899999999999 789999999999999998875433 489999999999999999999999999999666
Q ss_pred hHHHHHHHHHHHHhc----CCCccccCHHHHHHHH-HHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 240 QLDRYFSSFKEFAAS----RPLSELRTAEEVDAAA-VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~----~~~~~~~~~eea~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
..+.+..-+...... .-+..++..++..-.+ ..-++...+...-+......++...++.+..-.+..++ +.+-
T Consensus 171 ~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft--Dq~g 248 (835)
T KOG2047|consen 171 AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT--DQLG 248 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc--HHHH
Confidence 444433222111000 0000000001100000 00000000000000001111122223333333333333 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc-------------------------
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD------------------------- 369 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~------------------------- 369 (1169)
+++..+.+.|...+.+++|+..|+++|.... . -.+...++..|+.|+++.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~-t----vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVM-T----VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe-e----hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 6778889999999999999999999987421 1 112234555566665321
Q ss_pred -------------------------------------CChHHHHHHHHHHHHh-cc-----CCHHHHHHHHHHHHHcCCh
Q 001060 370 -------------------------------------GDFNKVVKLYERCLIA-CA-----NYPEYWIRYVLCMEASGSM 406 (1169)
Q Consensus 370 -------------------------------------gd~~~a~~lyeraL~~-~~-----~~~e~W~~~a~~l~~~g~~ 406 (1169)
|+..+.+..|..|+.. +| .-..+|..++.+|+..|++
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 2233344445444443 22 2236999999999999999
Q ss_pred HHHHHHHHHHHHHhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-------------------hHHHHH
Q 001060 407 DLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-------------------LLEAII 464 (1169)
Q Consensus 407 e~A~~vl~rAl~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-------------------~~~~~~ 464 (1169)
+.|+.+|++|++..-+ +...+|+.||.++.++.+++.|+++.+++. . .|. .+.+|.
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-H-VPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-c-CCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 9999999999975423 347899999999999999999999999872 1 222 356899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc--CCCHHHHHHHH
Q 001060 465 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV--QLSKPLLEALI 542 (1169)
Q Consensus 465 ~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~--p~s~~l~~~~a 542 (1169)
.|++++...|-++..+.+|++.|++-- ..|.+-++||.||.. ..-++++.++|++++.++ |.-.++|..|+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLri------aTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRI------ATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 999999999999999999999999863 348899999999876 777999999999999987 56678998776
Q ss_pred Hh-HhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 543 HF-ESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 543 ~~-E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
.- -...|. ...+.+|.|||+||.. ||++..+.|+..|..||+.+|-.....++++|+....+.
T Consensus 555 tkfi~rygg-~klEraRdLFEqaL~~-------Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 555 TKFIKRYGG-TKLERARDLFEQALDG-------CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE 618 (835)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence 43 334443 3378899999999994 678899999999999999999999999999998766553
No 9
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=2.1e-28 Score=276.24 Aligned_cols=423 Identities=17% Similarity=0.225 Sum_probs=306.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 001060 120 IRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAY 199 (1169)
Q Consensus 120 Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~ 199 (1169)
||.++.++++..|.+.++|+.|+.++ .|+.|.+++.++-+..|.+..+|+.-+.++. .+|+.+...++..++|..
T Consensus 395 arilL~rAveccp~s~dLwlAlarLe----tYenAkkvLNkaRe~iptd~~IWitaa~LEE-~ngn~~mv~kii~rgl~~ 469 (913)
T KOG0495|consen 395 ARILLERAVECCPQSMDLWLALARLE----TYENAKKVLNKAREIIPTDREIWITAAKLEE-ANGNVDMVEKIIDRGLSE 469 (913)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHH----HHHHHHHHHHHHHhhCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence 55555555555555555555555444 4555555555555555555555555555554 556666666666665522
Q ss_pred c--------------------------------------CCCCC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-chh
Q 001060 200 V--------------------------------------GTDYL-SFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-PIQ 239 (1169)
Q Consensus 200 ~--------------------------------------g~d~~-s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-p~~ 239 (1169)
. |.+-. ....|..-.+.....+.++-++.||..+|+. |..
T Consensus 470 L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k 549 (913)
T KOG0495|consen 470 LQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCK 549 (913)
T ss_pred HhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccch
Confidence 1 11100 1233444444444556678889999999987 443
Q ss_pred hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH
Q 001060 240 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV 319 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~ 319 (1169)
..+|.....|+.++.- .|+...+.+++. +..+ ..+.+|-+
T Consensus 550 --~slWlra~~~ek~hgt-----~Esl~Allqkav----------------------~~~p--------kae~lwlM--- 589 (913)
T KOG0495|consen 550 --KSLWLRAAMFEKSHGT-----RESLEALLQKAV----------------------EQCP--------KAEILWLM--- 589 (913)
T ss_pred --hHHHHHHHHHHHhcCc-----HHHHHHHHHHHH----------------------HhCC--------cchhHHHH---
Confidence 4567777666655432 222211111111 1111 11222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 399 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~ 399 (1169)
....+-..++.-.++..+..++. .+|.+.++|+.-+.++-++..+++++.+|.++....+ ...+|++++.+
T Consensus 590 ~ake~w~agdv~~ar~il~~af~--------~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~ 660 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFE--------ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANL 660 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHH--------hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHH
Confidence 22334455777888888888877 5777889999999998888999999999999987544 57899999999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001060 400 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 479 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 479 (1169)
+.-++..++|+.+++++++.+ |++..+|+++++++++.++++.||..|..- ++..|....+|+.++.++.+.|++-+|
T Consensus 661 er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G-~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQG-TKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhc-cccCCCCchHHHHHHHHHHHhcchhhH
Confidence 888999999999999999998 899999999999999999999999999986 788999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCCh--------
Q 001060 480 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP-------- 551 (1169)
Q Consensus 480 ~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~-------- 551 (1169)
+.+++++.-.+|.+ ..+|+...+++.+ .|+.+.|..++.+||+.+|.+..||-.-+.|+-..+..
T Consensus 739 R~ildrarlkNPk~------~~lwle~Ir~ElR-~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 739 RSILDRARLKNPKN------ALLWLESIRMELR-AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred HHHHHHHHhcCCCc------chhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 99999999888643 5689999999988 99999999999999999999999998888877553221
Q ss_pred -------------------hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhC
Q 001060 552 -------------------KQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 612 (1169)
Q Consensus 552 -------------------~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~ 612 (1169)
..++.+|+.|+|++...+++. .+|.-|..|+..||+.+..+.|+++....-|
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G---------D~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG---------DAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc---------hHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 125566777999999998876 5899999999999999999999999998887
Q ss_pred CC
Q 001060 613 PH 614 (1169)
Q Consensus 613 ~~ 614 (1169)
.+
T Consensus 883 ~h 884 (913)
T KOG0495|consen 883 TH 884 (913)
T ss_pred CC
Confidence 65
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.98 E-value=1.8e-29 Score=282.87 Aligned_cols=423 Identities=16% Similarity=0.153 Sum_probs=358.8
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
++.-...-..+++.+|.-.+++..|+..+... |+++.|..+|+.++++.|+..+.|+.++..+...|+.+.|..+|..
T Consensus 98 ~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker--g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 98 LDKSSAGSLLAIRKNPQGAEAYSNLANILKER--GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred hhhhhhhhhhhhhccchHHHHHHHHHHHHHHh--chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 44555566678999999999999999999884 6999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 240 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~ 240 (1169)
+|+++|+......+...++. ..|++++|...|.+|+... +--...|..+.-....+|++-.++.-|.+++++.+..
T Consensus 176 alqlnP~l~ca~s~lgnLlk-a~Grl~ea~~cYlkAi~~q---p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f 251 (966)
T KOG4626|consen 176 ALQLNPDLYCARSDLGNLLK-AEGRLEEAKACYLKAIETQ---PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF 251 (966)
T ss_pred HHhcCcchhhhhcchhHHHH-hhcccchhHHHHHHHHhhC---CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc
Confidence 99999999988888888887 8999999999999999944 4456789999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHH
Q 001060 241 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 320 (1169)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~ 320 (1169)
++.+++....+.. +...++|..+....+..-..... ...-+
T Consensus 252 ~dAYiNLGnV~ke------~~~~d~Avs~Y~rAl~lrpn~A~---------------------------------a~gNl 292 (966)
T KOG4626|consen 252 LDAYINLGNVYKE------ARIFDRAVSCYLRALNLRPNHAV---------------------------------AHGNL 292 (966)
T ss_pred hHHHhhHHHHHHH------HhcchHHHHHHHHHHhcCCcchh---------------------------------hccce
Confidence 8888888766532 22334444433222221111100 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
.-+|.+.+..+-||..|+++|. +.|...+++.+++..+...|+..+++..|.+||..||++++....++.++
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~--------~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALE--------LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHh--------cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3368888999999999999999 78888999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 480 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~ 480 (1169)
..+|.+++|..+|.+|++.+ |.+...+..+|.++.++|++++|..+|+.+ +.+.|...+.+.++++.+..+|+.+.|.
T Consensus 365 ~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea-lrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEA-LRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHH-HhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 99999999999999999998 899999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCC----hhHHHH
Q 001060 481 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS----PKQIDF 556 (1169)
Q Consensus 481 ~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~----~~~~~~ 556 (1169)
++|.+||.++| ++.+.+.+++.+... .|++.+|+..|+.||++.|+.+.-+-++++-.....+ .++++.
T Consensus 443 q~y~rAI~~nP------t~AeAhsNLasi~kD-sGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 443 QCYTRAIQINP------TFAEAHSNLASIYKD-SGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHhcCc------HHHHHHhhHHHHhhc-cCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 99999999984 667888999988655 9999999999999999999998776665554433322 223445
Q ss_pred HHHHHHHHh
Q 001060 557 LEQLVDKFL 565 (1169)
Q Consensus 557 ~r~l~eral 565 (1169)
+.++..+-+
T Consensus 516 l~sivrdql 524 (966)
T KOG4626|consen 516 LVSIVRDQL 524 (966)
T ss_pred HHHHHHHHH
Confidence 555555544
No 11
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.96 E-value=7.7e-26 Score=255.68 Aligned_cols=440 Identities=17% Similarity=0.271 Sum_probs=306.3
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKL------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKV 154 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~------~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A 154 (1169)
..+-.-.|+++++.-|.+...|..+++.-... ...-+.....+|+++|-.--.++..|+.|..+.++++.+.+.
T Consensus 42 ~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~t 121 (835)
T KOG2047|consen 42 DKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRT 121 (835)
T ss_pred hHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHH
Confidence 34667789999999999999999998543321 013456788899999988888999999999999999999999
Q ss_pred HHHHHHHHhccCC--CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcC-------------------------------
Q 001060 155 VEVYERAVQGVTY--SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVG------------------------------- 201 (1169)
Q Consensus 155 ~~l~eraL~~~P~--s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g------------------------------- 201 (1169)
+.+|.|+|...|- ..++|-.|++|+. ..+-++.+.++|+|-|+..|
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~-~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~ 200 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVE-SHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDE 200 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHH-hCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchh
Confidence 9999999998873 6789999999998 67777777777777552110
Q ss_pred ---------------------CC-------------------C--CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--c
Q 001060 202 ---------------------TD-------------------Y--LSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN--P 237 (1169)
Q Consensus 202 ---------------------~d-------------------~--~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~--p 237 (1169)
.+ + .-..||..+++|..+.|.+++|+.+|..++.. -
T Consensus 201 f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t 280 (835)
T KOG2047|consen 201 FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMT 280 (835)
T ss_pred hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhee
Confidence 00 0 01356777777777778999999999999987 4
Q ss_pred hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchh-hhccccccCCc-------cccccCC--ccccCc
Q 001060 238 IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAE-VKANEEEVQPD-------ATEQTSK--PVSAGL 307 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~-~~~~~~~~~~~-------~~e~~~~--~~~~~~ 307 (1169)
..+..++|+.|..|+..-.-..+ - ...+..+. ....+-+.+.. .-..+.+ .+..++
T Consensus 281 vrDFt~ifd~Ya~FEE~~~~~~m-------------e-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 281 VRDFTQIFDAYAQFEESCVAAKM-------------E-LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-------------h-hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 45889999999888543210000 0 00000000 00000000000 0000000 011233
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC--hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001060 308 TEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS--VTELENWHNYLDFIERDGDFNKVVKLYERCLIA 385 (1169)
Q Consensus 308 ~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~--~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~ 385 (1169)
.+.+.|.+-+. +| .+...+.+..|.++|++ |.|.- ..--.+|..+++|++..|+.+.++.+|+++++.
T Consensus 347 ~nV~eW~kRV~----l~--e~~~~~~i~tyteAv~~----vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 347 HNVEEWHKRVK----LY--EGNAAEQINTYTEAVKT----VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred ccHHHHHhhhh----hh--cCChHHHHHHHHHHHHc----cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 44444444322 22 13455667788888875 22211 112367999999999999999999999999988
Q ss_pred ccCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-----------------ccChHHHHHHHHHHHHcCCHHHH
Q 001060 386 CANY----PEYWIRYVLCMEASGSMDLAHNALARATHVFV-----------------KRLPEIHLFAARFKEQNGDIDGA 444 (1169)
Q Consensus 386 ~~~~----~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~-----------------p~~~~l~~~~a~~~e~~g~~~~A 444 (1169)
.-.. ..+|..+|....++.+++.|+.++++|+..-- .++..+|.+|+++++..|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 6544 36899999888888889999999999885310 12567999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC--CHHHHHH
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR--NAEKARQ 522 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g--~~e~Ar~ 522 (1169)
+.+|+++ +++.--.+.+.++|+.|+....-++++.++|++.|.+++ .+...++|..|..-..+..| +++.||.
T Consensus 497 k~vYdri-idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk----~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 497 KAVYDRI-IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK----WPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC----CccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 9999997 666666788889999998888888999999999999886 35556788776533333344 6889999
Q ss_pred HHHHHhhhcCC--CHHHHHHHHHhHhhCCC
Q 001060 523 ILVDSLDHVQL--SKPLLEALIHFESIQSS 550 (1169)
Q Consensus 523 i~~kAl~~~p~--s~~l~~~~a~~E~~~~~ 550 (1169)
+|++||+.+|. .+.+++.|+.||...|-
T Consensus 572 LFEqaL~~Cpp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 572 LFEQALDGCPPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhH
Confidence 99999998873 23677888888877653
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=8.8e-27 Score=261.36 Aligned_cols=429 Identities=16% Similarity=0.128 Sum_probs=253.5
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 001060 78 VPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV 157 (1169)
Q Consensus 78 ~~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l 157 (1169)
.+.+..+++.....-..||.+.+....|...+-+. .++++...--..++...|...+.+-+|+..+...|+++.|..+
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~--~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG--SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcc--cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 35577888888889999999988877777666553 4777777777888999999999999999999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001060 158 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP 237 (1169)
Q Consensus 158 ~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p 237 (1169)
|+.++++.|..+|.|+.++..+. +.|+.+.|...|-.||+..+. -.-.-.....+.+..|++.+|..+|.+++++-
T Consensus 139 y~~aiel~p~fida~inla~al~-~~~~~~~a~~~~~~alqlnP~---l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 139 YRAAIELKPKFIDAYINLAAALV-TQGDLELAVQCFFEALQLNPD---LYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHhcCchhhHHHhhHHHHHH-hcCCCcccHHHHHHHHhcCcc---hhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 99999999999999999999998 899999999999999995553 33445566777888999999999999999984
Q ss_pred hhhHHHHHHHHHHHHhcCC-CccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHH
Q 001060 238 IQQLDRYFSSFKEFAASRP-LSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKY 316 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~-~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~ 316 (1169)
+...-.|-+....|...-. ...+...++|.. .++ .....|
T Consensus 215 p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk------------------------------------ldP---~f~dAY 255 (966)
T KOG4626|consen 215 PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK------------------------------------LDP---NFLDAY 255 (966)
T ss_pred CceeeeehhcchHHhhcchHHHHHHHHHHhhc------------------------------------CCC---cchHHH
Confidence 4211111111111100000 000000011100 000 000012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
++ ++.+|++...+++|+.+|++++. +.|....++-+++-.+.+.|+.+-|+..|+|||...|+.++.+..+
T Consensus 256 iN-LGnV~ke~~~~d~Avs~Y~rAl~--------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 256 IN-LGNVYKEARIFDRAVSCYLRALN--------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNL 326 (966)
T ss_pred hh-HHHHHHHHhcchHHHHHHHHHHh--------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 22 23445555555555555555544 3444444444444444444555555555555555555555555555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
+..|...|+..+|..+|.+|+..+ |+.+.....++.++.++|.+++|..+|+++ .+..|+......+++.++..+|++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~a-l~v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKA-LEVFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHH-HhhChhhhhhhhhHHHHHHhcccH
Confidence 555555555555555555555544 455555555555555555555555555554 444555555555555555555555
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001060 477 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 556 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~ 556 (1169)
++|+.+|+.||.+.| +....+.+.+..+- ..|+...|...|.+|+..+|.-++-+.+++.+...-|+ +..
T Consensus 405 ~~Ai~~YkealrI~P------~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn---i~~ 474 (966)
T KOG4626|consen 405 DDAIMCYKEALRIKP------TFADALSNMGNTYK-EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN---IPE 474 (966)
T ss_pred HHHHHHHHHHHhcCc------hHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC---cHH
Confidence 555555555555542 23334444444432 25555555555555555555444444444444433333 444
Q ss_pred HHHHHHHHhhcCCCCC
Q 001060 557 LEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 557 ~r~l~eral~~~~~~~ 572 (1169)
+..-|+.+|...||.+
T Consensus 475 AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 475 AIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHHccCCCCc
Confidence 4445555555555444
No 13
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.9e-29 Score=221.41 Aligned_cols=115 Identities=33% Similarity=0.558 Sum_probs=106.5
Q ss_pred CcchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcce--eEeeeeccccCCCce
Q 001060 719 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNGGV 796 (1169)
Q Consensus 719 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~--~i~~~d~q~~~~~~i 796 (1169)
.+..||..||++||.+|+.+|..|..||.+. ||++|+|..++|+.+ |.+|+.||||++| .|+++||||+.+|||
T Consensus 5 ~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~-S~LTfEGqq~qG~~~---IveKl~sLpFqkiqh~IttvD~QPt~~g~i 80 (126)
T KOG2104|consen 5 VYEAVAKAFVQHYYSLFDNDRSQLGALYIDT-SMLTFEGQQIQGKDA---IVEKLTSLPFQKIQHSITTVDSQPTPDGGI 80 (126)
T ss_pred cHHHHHHHHHHHHHHHhcCchhHhhhhhccc-ceeeEcchhhcchHH---HHHHHhcCChhhhhceeeecccccCCCCcE
Confidence 3478999999999999999999999999997 799999999888866 5789999999988 599999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEEeeC-CeEEEEcceEEec
Q 001060 797 LVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 838 (1169)
Q Consensus 797 lv~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nDifr~~ 838 (1169)
||+|+|+|+.+++ ++.+|+|+|+|.+.. ++|||.|||||+-
T Consensus 81 lv~V~G~Lk~dEd-~~~~FsQvF~L~~n~~~~~~v~ndiFRLn 122 (126)
T KOG2104|consen 81 LVMVVGQLKLDED-PILRFSQVFLLKPNIQGSYYVFNDIFRLN 122 (126)
T ss_pred EEEEeeeeeeccC-CccceeeEEEEeEcCCCCEEEEeeeEEEe
Confidence 9999999999965 899999999999984 8999999999984
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.9e-24 Score=282.76 Aligned_cols=469 Identities=11% Similarity=0.008 Sum_probs=293.2
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
...+++.|+++++.+|.+...+..++..+... +++++|+.++++++..+|.+...|..++.++...|++++|+++|++
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLRS--GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44555555555555555555555555444442 3555555555555555555555555555555555555555555555
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 240 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~ 240 (1169)
++...|.+...|..++..+. ..|++++|+..|++++...+ ....+|..++.+....++++.|+.+|.+++...+.+
T Consensus 491 a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 566 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDI-QEGNPDDAIQRFEKVLTIDP---KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQE 566 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCc---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 55555555555555555444 44555555555555554222 233444444444444455555555555554443222
Q ss_pred HHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhC-----------------CCccchhhhccccccCCccccccCCcc
Q 001060 241 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA-----------------PSETGAEVKANEEEVQPDATEQTSKPV 303 (1169)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~-----------------~~e~~~~~~~~~~~~~~~~~e~~~~~~ 303 (1169)
...++.....+..... .+++......+... ..+........+. .++.
T Consensus 567 ~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~~----- 630 (899)
T TIGR02917 567 IEPALALAQYYLGKGQ------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK-----LLAL----- 630 (899)
T ss_pred hhHHHHHHHHHHHCCC------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHh-----
Confidence 2222221111111100 01111100000000 0000000000000 0000
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001060 304 SAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL 383 (1169)
Q Consensus 304 ~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL 383 (1169)
.+.+.. .+.....+|...+++++++..|+++++ .+|.+...|..++..+...|+++.++.+++++.
T Consensus 631 --~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 631 --QPDSAL----ALLLLADAYAVMKNYAKAITSLKRALE--------LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred --CCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000111 223345567777788888888888877 566677788888888888888888888888888
Q ss_pred HhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001060 384 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 384 ~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
...+.++..|..++.++...|++++|...|++++... |++ ..++.++.++...|++++|...++++ ++..|++..++
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~ 773 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-PSS-QNAIKLHRALLASGNTAEAVKTLEAW-LKTHPNDAVLR 773 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCc-hHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHH
Confidence 8888888888888888888888888888888888876 444 66777888888888888888888887 67788888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHH
Q 001060 464 IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 543 (1169)
Q Consensus 464 ~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~ 543 (1169)
..++.++...|++++|+.+|+++++..|. .+.++..++..+.. .|+ .+|+.+++++++..|++..++..++.
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLE-LKD-PRALEYAEKALKLAPNIPAILDTLGW 845 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHh-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 88898888889999999999999888753 25677777777665 777 77999999999998988888888888
Q ss_pred hHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001060 544 FESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHA 608 (1169)
Q Consensus 544 ~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~ 608 (1169)
+....+. .+.+..+|++++...+.++ .++..+.......|+.+.+.++.++..
T Consensus 846 ~~~~~g~---~~~A~~~~~~a~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 846 LLVEKGE---ADRALPLLRKAVNIAPEAA---------AIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHcCC---HHHHHHHHHHHHhhCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8777776 5667888999988776654 578888888888899888888888764
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=5.1e-24 Score=278.73 Aligned_cols=476 Identities=12% Similarity=0.039 Sum_probs=367.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+..+.+++.|+++++.+|.+...|..++..+... ++.++|++.|++++...|.....+..++..+.+.|++++|++++
T Consensus 377 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 377 GDFEKAAEYLAKATELDPENAAARTQLGISKLSQ--GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 5578999999999999999999999999998874 59999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~ 238 (1169)
++++...|.+..+|..++..+. ..+++++|+..|+++++.. +.....|..++......++++.|..+|++++...+
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 530 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYL-GKGDLAKAREAFEKALSIE---PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP 530 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHH-hCCCHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999988 8899999999999999844 34567788888888889999999999999998755
Q ss_pred hhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhC-----------------CCccchhhhccccccCCccccccCC
Q 001060 239 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA-----------------PSETGAEVKANEEEVQPDATEQTSK 301 (1169)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~-----------------~~e~~~~~~~~~~~~~~~~~e~~~~ 301 (1169)
.+...+......+..... .+++......+... ..+.......... .++
T Consensus 531 ~~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~---- 595 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGN------EEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE-----AAD---- 595 (899)
T ss_pred CcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH-----HHH----
Confidence 544443333332222111 12222111111111 1111110000000 000
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001060 302 PVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYER 381 (1169)
Q Consensus 302 ~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyer 381 (1169)
..+.+. ..+..+..+|...+++++++..|+++++ .++.+...|..++..+...|++++|+..|++
T Consensus 596 ---~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 596 ---AAPDSP----EAWLMLGRAQLAAGDLNKAVSSFKKLLA--------LQPDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred ---cCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 001111 1233445667778888888888888887 4566677888888888888888888888888
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001060 382 CLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE 461 (1169)
Q Consensus 382 aL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 461 (1169)
++..+|.+.+.|..++.++...|++++|..+++++.... +..+.++..++.++...|++++|...|+++ +...|++ .
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~ 737 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA-LKRAPSS-Q 737 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH-HhhCCCc-h
Confidence 888888888888888888888888888888888888766 677888888888888888888888888887 6667776 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHH
Q 001060 462 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541 (1169)
Q Consensus 462 ~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~ 541 (1169)
.+..++.++.+.|++++|...+++++...|. .+.++..++.++.. .|++++|..+|+++++..|++...+..+
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPN------DAVLRTALAELYLA-QKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7778888888888888888888888887653 25677777877666 8899999999999999999888888877
Q ss_pred HHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 542 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 542 a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
+.+....++ ..+...+++++...++++ .++..+...+...|+.+.+.+++++..+..+.
T Consensus 811 ~~~~~~~~~----~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 811 AWLYLELKD----PRALEYAEKALKLAPNIP---------AILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhcCc----HHHHHHHHHHHhhCCCCc---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 777777665 226778888888776665 46777777888889999999999999888765
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=5.1e-23 Score=273.72 Aligned_cols=420 Identities=13% Similarity=0.100 Sum_probs=316.4
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHH----------------HHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYW----------------KKYAD 143 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W----------------~~~a~ 143 (1169)
..+.+.+.|.+++..+|+|.+++..+++++.. .|+.++|.+.+++++...|.+..+| +.++.
T Consensus 43 ~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~--~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ 120 (1157)
T PRK11447 43 REDLVRQSLYRLELIDPNNPDVIAARFRLLLR--QGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQAR 120 (1157)
T ss_pred ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHH
Confidence 45688999999999999999999999999887 4699999999999999999998886 56677
Q ss_pred HHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhH
Q 001060 144 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW 223 (1169)
Q Consensus 144 ~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~ 223 (1169)
++.+.|++++|+++|++++...|.+.++-..|........++.++|+..|+++++.. +....++..+..++...++.
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~---P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY---PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHccCCH
Confidence 888999999999999999999999887766665555445689999999999999954 44678899999999999999
Q ss_pred HHHHHHHHHHHhcchhhH--HHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccch---hhhccccccCCccccc
Q 001060 224 SRVAMIYTRILENPIQQL--DRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGA---EVKANEEEVQPDATEQ 298 (1169)
Q Consensus 224 ~~a~~iY~r~L~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~---~~~~~~~~~~~~~~e~ 298 (1169)
++|+.+|++++..+.... ...|.. .+... .. ..++..+.........+... ....+... ...
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~--~l~~~-~~-----~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~-----~~~ 264 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYG--QIKDM-PV-----SDASVAALQKYLQVFSDGDSVAAARSQLAEQ-----QKQ 264 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHH--HHhcc-CC-----ChhhHHHHHHHHHHCCCchHHHHHHHHHHHH-----HHh
Confidence 999999999988754322 112211 11000 00 00000000000111100000 00000000 000
Q ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHH
Q 001060 299 TSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKL 378 (1169)
Q Consensus 299 ~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~l 378 (1169)
. .+... ....+...+...+++++|+..|+++|+ ++|.+.++|..++..+.+.|++++|+..
T Consensus 265 ~--------~dp~~---~~~~~G~~~~~~g~~~~A~~~l~~aL~--------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 265 L--------ADPAF---RARAQGLAAVDSGQGGKAIPELQQAVR--------ANPKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred c--------cCcch---HHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0 00000 011235567788899999999999998 6788889999999999999999999999
Q ss_pred HHHHHHhccCCHH--HH----------H--HHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHH
Q 001060 379 YERCLIACANYPE--YW----------I--RYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGA 444 (1169)
Q Consensus 379 yeraL~~~~~~~e--~W----------~--~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A 444 (1169)
|++++..+|.+.. .| . ..+..+...|++++|+..|++++++. |++..+++.++.++...|++++|
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA 404 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAA 404 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999887653 23 2 33556678899999999999999987 78899999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHH------------------------------------------HHHcCCHHHHHHH
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANM------------------------------------------ERRLGNLEDAFSL 482 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~------------------------------------------e~r~g~~e~A~~i 482 (1169)
+..|+++ ++++|++..++..++.+ +...|++++|+.+
T Consensus 405 ~~~y~~a-L~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~ 483 (1157)
T PRK11447 405 ERYYQQA-LRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAEL 483 (1157)
T ss_pred HHHHHHH-HHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999998 78899987766544433 3457999999999
Q ss_pred HHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhH
Q 001060 483 YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 483 y~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E 545 (1169)
|++++...|+ .+.++..++.++.. .|++++|+.+|+++++..|++...+..++.+.
T Consensus 484 ~~~Al~~~P~------~~~~~~~LA~~~~~-~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l 539 (1157)
T PRK11447 484 QRQRLALDPG------SVWLTYRLAQDLRQ-AGQRSQADALMRRLAQQKPNDPEQVYAYGLYL 539 (1157)
T ss_pred HHHHHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999864 36678888888777 99999999999999999999987766554443
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=3.5e-23 Score=275.24 Aligned_cols=463 Identities=12% Similarity=0.033 Sum_probs=339.7
Q ss_pred chHHHHHHHHHHh--CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001060 82 SGEEDRLWNIVKA--NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE 159 (1169)
Q Consensus 82 ~~~~~~l~~al~~--nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~e 159 (1169)
..+...|.+.... +|... -..++..+.. .+++++|+..|+++|+.+|.+..+|..++.++.+.|++++|+.+|+
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~--~~~~G~~~~~--~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFR--ARAQGLAAVD--SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHhccCcchH--HHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555554333 33321 1233444444 3688899999999999999999999999999999999999999999
Q ss_pred HHHhccCCCHH------------HHHH--HHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHH
Q 001060 160 RAVQGVTYSVD------------IWLH--YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSR 225 (1169)
Q Consensus 160 raL~~~P~s~~------------lw~~--y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~ 225 (1169)
++++..|.+.. .|.. .+.... ..+++++|+..|+++++..+ .....+..+...+...|++++
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~-~~g~~~eA~~~~~~Al~~~P---~~~~a~~~Lg~~~~~~g~~~e 403 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL-KANNLAQAERLYQQARQVDN---TDSYAVLGLGDVAMARKDYAA 403 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHH
Confidence 99988886542 2222 233444 57888999999999998544 345667777788888889999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCcccc
Q 001060 226 VAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 305 (1169)
Q Consensus 226 a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~ 305 (1169)
|+..|+++|+..+.+...+......+.... .+++.. ++..+..... .. ....
T Consensus 404 A~~~y~~aL~~~p~~~~a~~~L~~l~~~~~-------~~~A~~----~l~~l~~~~~--~~---------~~~~------ 455 (1157)
T PRK11447 404 AERYYQQALRMDPGNTNAVRGLANLYRQQS-------PEKALA----FIASLSASQR--RS---------IDDI------ 455 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-------HHHHHH----HHHhCCHHHH--HH---------HHHH------
Confidence 999999999875554444433333332111 122221 1111100000 00 0000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001060 306 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 385 (1169)
Q Consensus 306 ~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~ 385 (1169)
........+..+..+|...+++++|+..|+++++ ++|.+..++..++..+.+.|++++|+.+|++++..
T Consensus 456 ---~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 456 ---ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred ---HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 0000011233456678889999999999999998 78888889999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc---------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS 456 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p---------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~ 456 (1169)
.|.+++.++.++.++...++.++|+..|+++...... -.....+..+..+...|++++|+.+++ ..
T Consensus 525 ~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~ 599 (1157)
T PRK11447 525 KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQ 599 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hC
Confidence 9999999999999999999999999999875432100 012234567788889999999999876 37
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHH
Q 001060 457 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 536 (1169)
Q Consensus 457 P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~ 536 (1169)
|.+..+++.++.++.+.|++++|+.+|+++++..|. .+.++..++.++.. .|++++|+++|+++++..|++..
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~------~~~a~~~la~~~~~-~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG------NADARLGLIEVDIA-QGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-CCCHHHHHHHHHHHhccCCCChH
Confidence 888999999999999999999999999999999864 36788999999877 89999999999999999999999
Q ss_pred HHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 001060 537 LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHAR 609 (1169)
Q Consensus 537 l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~ 609 (1169)
++..++......++ .+.+..+|++++...++.+.. .....++.....+....|+.+.+...+++...
T Consensus 673 ~~~~la~~~~~~g~---~~eA~~~~~~al~~~~~~~~~---~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 673 TQRRVALAWAALGD---TAAAQRTFNRLIPQAKSQPPS---MESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHhCCC---HHHHHHHHHHHhhhCccCCcc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888877777776 566889999998876554311 12345677778889999999999999988854
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=6.6e-23 Score=256.41 Aligned_cols=413 Identities=12% Similarity=0.031 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF 178 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~ 178 (1169)
...+..++..+.+ .+++++|+++|+++|...|+ ..+|..++..+.+.|++++|++.|+++|...|.+.+.|+..+..
T Consensus 127 a~~~k~~G~~~~~--~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 127 AAKLKEKGNKAYR--NKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456788888777 46999999999999999996 68999999999999999999999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh------hHHHHH-------
Q 001060 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ------QLDRYF------- 245 (1169)
Q Consensus 179 ~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~------~~~~~~------- 245 (1169)
+. ..|++++|+..|..++...+.+ ...+...+...+.. .+...+..+++..+. .+..++
T Consensus 204 ~~-~lg~~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~~-----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 204 YD-GLGKYADALLDLTASCIIDGFR--NEQSAQAVERLLKK-----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HH-HcCCHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHH-----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 88 8999999999998777643322 22222222211111 111112222221100 001111
Q ss_pred --------------------HHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCcccc
Q 001060 246 --------------------SSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 305 (1169)
Q Consensus 246 --------------------~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~ 305 (1169)
..+..+... ......+++..+...++..-
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~---~~~~~y~~A~~~~~~al~~~---------------------------- 324 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPES---KADESYEEAARAFEKALDLG---------------------------- 324 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHh---hhhhhHHHHHHHHHHHHhcC----------------------------
Confidence 111000000 00001122221111111000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001060 306 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 385 (1169)
Q Consensus 306 ~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~ 385 (1169)
... .........++.+|...+++++|+..|+++|. ++|.....|..++..+...|++++|+..|+++|..
T Consensus 325 -~~~-~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 325 -KLG-EKEAIALNLRGTFKCLKGKHLEALADLSKSIE--------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred -CCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000 01111334556778889999999999999998 78888899999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 465 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 465 (1169)
+|.++++|+.++.++...|++++|+..|++++.+. |++..+|+.++.++.+.|++++|+..|+++ ++..|.+..+|..
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~a-l~~~P~~~~~~~~ 472 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRC-KKNFPEAPDVYNY 472 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCChHHHHH
Confidence 99999999999999999999999999999999988 889999999999999999999999999998 7889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhH
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E 545 (1169)
++.++..+|++++|+..|++|+.+.+...........++..+..++...|++++|+.+|+++++++|++...+..++.+.
T Consensus 473 lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999986432111111123333444444468999999999999999999998888888888
Q ss_pred hhCCChhHHHHHHHHHHHHhhcC
Q 001060 546 SIQSSPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 546 ~~~~~~~~~~~~r~l~eral~~~ 568 (1169)
...|. .+.+..+|++++...
T Consensus 553 ~~~g~---~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 553 LQQGD---VDEALKLFERAAELA 572 (615)
T ss_pred HHccC---HHHHHHHHHHHHHHh
Confidence 88887 677888999998764
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=2e-22 Score=252.15 Aligned_cols=427 Identities=14% Similarity=0.124 Sum_probs=317.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 215 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~ 215 (1169)
..++..+..+.+.|++++|++.|+++|...|. ..+|...+..+. ..+++++|+..|+++|+. ++.....|.....
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~-~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~ 202 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHN-ALGDWEKVVEDTTAALEL---DPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH-HhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH
Confidence 34677788999999999999999999999985 778888888888 789999999999999994 4446778888888
Q ss_pred HHHHhhhHHHHHHHHHHHHhcchhh---HHHHHHHH---------HHHHhcCCCccccCHHHHHHHHHHHhhCCCccchh
Q 001060 216 YEYMQQEWSRVAMIYTRILENPIQQ---LDRYFSSF---------KEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAE 283 (1169)
Q Consensus 216 ~e~~~~~~~~a~~iY~r~L~~p~~~---~~~~~~~~---------~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~ 283 (1169)
....+++++.|+..|..++.++..+ ...++... .......+.. +....... ..+..+....
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~-~~~~~~~~----~~~~~~~~~~-- 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPEN-LPSVTFVG----NYLQSFRPKP-- 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCHHHHH----HHHHHccCCc--
Confidence 8889999999999998887764321 12222111 1111111110 00000000 0000000000
Q ss_pred hhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHH
Q 001060 284 VKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYL 363 (1169)
Q Consensus 284 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl 363 (1169)
...+ .....+..+... ..+. .+..........+.+++++..|++++.. ..+.+.....|..++
T Consensus 276 --~~~~--~~~~~~~~~~~~-------~~~~-~l~~~~~e~~~~~~y~~A~~~~~~al~~-----~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 276 --RPAG--LEDSNELDEETG-------NGQL-QLGLKSPESKADESYEEAARAFEKALDL-----GKLGEKEAIALNLRG 338 (615)
T ss_pred --chhh--hhcccccccccc-------cchH-HHHHHHHHhhhhhhHHHHHHHHHHHHhc-----CCCChhhHHHHHHHH
Confidence 0000 000000000000 0000 0000001113446799999999999972 124567778899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHH
Q 001060 364 DFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 443 (1169)
Q Consensus 364 ~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~ 443 (1169)
.++...|++++|+..|+++|...|.+...|+.++.++...|++++|+..|++++++. |+++.+|+.++.++...|++++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999987 8999999999999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH
Q 001060 444 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 523 (1169)
Q Consensus 444 A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i 523 (1169)
|+..|+++ ++++|++...|+.++.++.++|++++|+..|++++...|. .+.+|..++.++.. .|++++|++.
T Consensus 418 A~~~~~ka-l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~-~g~~~~A~~~ 489 (615)
T TIGR00990 418 AGKDYQKS-IDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE------APDVYNYYGELLLD-QNKFDEAIEK 489 (615)
T ss_pred HHHHHHHH-HHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-ccCHHHHHHH
Confidence 99999998 8899999999999999999999999999999999998753 37788889998877 9999999999
Q ss_pred HHHHhhhcCCCHHHHHH--------HHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001060 524 LVDSLDHVQLSKPLLEA--------LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 595 (1169)
Q Consensus 524 ~~kAl~~~p~s~~l~~~--------~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 595 (1169)
|++|+++.|.+...+.. .+.++ ..+ +.+.+..+|++++...+++. .++..........|
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~-~~~---~~~eA~~~~~kAl~l~p~~~---------~a~~~la~~~~~~g 556 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQ-WKQ---DFIEAENLCEKALIIDPECD---------IAVATMAQLLLQQG 556 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHH-Hhh---hHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHHHcc
Confidence 99999999875433221 11222 123 36778899999998876553 36778888889999
Q ss_pred CHHHHHHHHHHHHhhhCC
Q 001060 596 DAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 596 d~~~i~~v~~R~~~~~~~ 613 (1169)
+.+.+.+.+++..++...
T Consensus 557 ~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 557 DVDEALKLFERAAELART 574 (615)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999988654
No 20
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=99.93 E-value=8.5e-26 Score=219.19 Aligned_cols=116 Identities=42% Similarity=0.653 Sum_probs=104.1
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCC--CcceeEeeeeccccCCCceE
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN--FTAIEIKTINSLGSWNGGVL 797 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~--~~~~~i~~~d~q~~~~~~il 797 (1169)
|.+||+.||++||++|+++|+.|++||+++|.|+ |+| .....|.++|.++|++|| ...++|.++|||++.+++|+
T Consensus 2 ~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~-~~~--~~~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~~il 78 (119)
T cd00780 2 AEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLS-REG--MKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSGGVI 78 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEE-ECC--ceEecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCCCEE
Confidence 5789999999999999999999999999987665 577 223446677899999999 45678999999999999999
Q ss_pred EEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEecc
Q 001060 798 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 839 (1169)
Q Consensus 798 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~ 839 (1169)
|+|+|.|+.++. ++++|+|+|+|.+++++|||+||||||+|
T Consensus 79 i~V~G~~~~~~~-~~~~F~q~F~L~~~~~~~~I~nD~fr~~~ 119 (119)
T cd00780 79 VMVTGSLKLDEQ-PPRKFSQTFVLAPQNGGYFVLNDIFRFVD 119 (119)
T ss_pred EEEEEEEEECCC-CceeEeEEEEEEecCCeEEEEeeEEEecC
Confidence 999999999985 79999999999999999999999999986
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=3.7e-21 Score=245.08 Aligned_cols=406 Identities=12% Similarity=0.030 Sum_probs=299.9
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE 159 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~e 159 (1169)
....+++.+.+++..+|.+..+|..++..+... +++.+|..+|+++|+.+|.+..+|..++.++...|++++|+.+++
T Consensus 30 ~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 30 QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345667777777777888888888888888774 588888888888888888888888888888888888888888888
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001060 160 RAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 239 (1169)
Q Consensus 160 raL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~ 239 (1169)
+++...|.+.. |+.++..+. ..|++++|...|+++++.. +....++..++..+...+..+.|...+++++..|..
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~-~~g~~~~Al~~l~~al~~~---P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~ 182 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYK-RAGRHWDELRAMTQALPRA---PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE 182 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHH-HCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH
Confidence 88888888888 888877777 7788888888888888844 336677777777777777788888888777764431
Q ss_pred hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH
Q 001060 240 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV 319 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~ 319 (1169)
....-+..... . +.. .
T Consensus 183 ~~~l~~~~~~~-----------------~----~r~----------------------------------------~--- 198 (765)
T PRK10049 183 KRDLEADAAAE-----------------L----VRL----------------------------------------S--- 198 (765)
T ss_pred HHHHHHHHHHH-----------------H----HHh----------------------------------------h---
Confidence 00000000000 0 000 0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhhccCCcccCCCC-hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---cCCHHH
Q 001060 320 REEMYKKAKEF---DSKIIGFETAIRRPYFHVKPLS-VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC---ANYPEY 392 (1169)
Q Consensus 320 ~~~~y~~~~~~---~~ai~~~e~al~r~~~~v~pl~-~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~---~~~~e~ 392 (1169)
........+++ ++|+..|+.+++. +...|.. +.....+...+..+...|++++|+..|++++... |.+...
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~--~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~ 276 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEAL--WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR 276 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhh--cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH
Confidence 00000111222 5677778877752 0111111 1122233332333356689999999999999875 555566
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-----------
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKRL----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSP----------- 457 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P----------- 457 (1169)
|+ +.++...|++++|+.+|+++++.. |.. ...+..++..+.+.|++++|+.+++++ .+..|
T Consensus 277 ~l--a~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~-~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 277 WV--ASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHT-INNSPPFLRLYGSPTS 352 (765)
T ss_pred HH--HHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH-hhcCCceEeecCCCCC
Confidence 74 777888999999999999998765 443 345666666778999999999999997 55555
Q ss_pred --C--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 458 --G--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 458 --~--~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
+ ...+++.++.++...|++++|+.+|++++...|.+ +.++..++.++.. .|++++|+++|+++++..|+
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~-~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN------QGLRIDYASVLQA-RGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCC
Confidence 2 34577889999999999999999999999998643 6799999998776 99999999999999999999
Q ss_pred CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 534 SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 534 s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
+..++...++.....++ .+.+..++++++...|+++
T Consensus 426 ~~~l~~~~a~~al~~~~---~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 426 NINLEVEQAWTALDLQE---WRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred ChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCH
Confidence 99999999998888876 7779999999999988876
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=7.3e-21 Score=237.57 Aligned_cols=347 Identities=12% Similarity=0.012 Sum_probs=291.8
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
++...++..++.++..+|.+.+++..|+..... .|++++|...|++++..+|++..+|..++.++...|++++|+..|
T Consensus 56 g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~--~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 56 DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA--SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 346789999999999999999999999987766 469999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-c
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-P 237 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-p 237 (1169)
++++...|.+..+|...+..+. ..|+.++|...|++++...+. +...+..... ....|++++|..+|++++.. |
T Consensus 134 ~~Al~l~P~~~~a~~~la~~l~-~~g~~~eA~~~~~~~~~~~P~---~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 134 EQAWLAFSGNSQIFALHLRTLV-LMDKELQAISLARTQAQEVPP---RGDMIATCLS-FLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHhCCCcHHHHHHHHHHHH-HCCChHHHHHHHHHHHHhCCC---CHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988 899999999999998885543 4444444333 45679999999999988765 2
Q ss_pred hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHH
Q 001060 238 IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYI 317 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i 317 (1169)
.... .. .
T Consensus 209 ~~~~-~~------------------------------------------------------------------------~ 215 (656)
T PRK15174 209 LERQ-ES------------------------------------------------------------------------A 215 (656)
T ss_pred Ccch-hH------------------------------------------------------------------------H
Confidence 1110 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHH----HHHHHHHHHHhccCCHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNK----VVKLYERCLIACANYPEYW 393 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~----a~~lyeraL~~~~~~~e~W 393 (1169)
......+...+++++++..|++++. ++|.....|..++..+...|++++ |+..|++++..+|.+..+|
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~--------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~ 287 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALA--------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIV 287 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 1112344567788889999999988 677788899999999889999885 8999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
..++.++...|++++|+..|++++++. |+++.++..++.++.+.|++++|+..|+++ .+..|++...+...+.++...
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~a-l~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQL-AREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHC
Confidence 999999999999999999999999987 889999999999999999999999999998 777998887777778888999
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 474 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
|++++|+..|++++...|.. + ...+++|+..|.++++..+..
T Consensus 366 G~~deA~~~l~~al~~~P~~--------~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASH--------L-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred CCHHHHHHHHHHHHHhChhh--------c-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 99999999999999998632 0 233567888888888866544
No 23
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.8e-21 Score=222.27 Aligned_cols=447 Identities=17% Similarity=0.190 Sum_probs=324.1
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV---GSMDKVV 155 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~---~~~e~A~ 155 (1169)
+....++..++.-+.+|++++.....|+.++.+. +++++.+..-..+...+|.|+.+|+.|+.-+... .+...+.
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~--~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKL--GDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHh--cchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 3466899999999999999999999999999995 5999999999999999999999999999877644 5678899
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhc------CCHHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHh---hhHHH
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINTY------GDPETIRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQ---QEWSR 225 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~~------~~~e~Ar~~~erAl~~~g~d~~s-~~lw~~y~~~e~~~---~~~~~ 225 (1169)
.+|+++|... .++-+|..|+.|..... ++++..|.+|++||...|.++.. ..||..|++|+... -+.+.
T Consensus 171 ~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~q 249 (881)
T KOG0128|consen 171 ELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQ 249 (881)
T ss_pred HHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999964 89999999999998532 46789999999999999988864 69999999999864 23456
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCcccc
Q 001060 226 VAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 305 (1169)
Q Consensus 226 a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~ 305 (1169)
+..++.+.|..|.+. +.....|...-..+-+.
T Consensus 250 v~a~~~~el~~~~D~-~~~~~~~~~~sk~h~~~----------------------------------------------- 281 (881)
T KOG0128|consen 250 VIALFVRELKQPLDE-DTRGWDLSEQSKAHVYD----------------------------------------------- 281 (881)
T ss_pred HHHHHHHHHhccchh-hhhHHHHHHHHhcchHH-----------------------------------------------
Confidence 888899999988442 22222222210000000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001060 306 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 385 (1169)
Q Consensus 306 ~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~ 385 (1169)
......+...++...-+-.|++.+. .++.....|+.|++|+...|++.++...++|++.-
T Consensus 282 ------------~~~~~~~~a~~~l~~~~~~~e~~~q--------~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 282 ------------VETKKLDDALKNLAKILFKFERLVQ--------KEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred ------------HHhccHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 0000111112222222233555555 56777889999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHH-HHHHHHHhhhcCCChHHHH
Q 001060 386 CANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGA-RAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~-~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A-~~~~~~a~~~~~P~~~~~~ 463 (1169)
.+...++|+.|+.++.. .+-.+.+..++-|++..+ |-...+|-.+...+++.+..... ...+.+.+. - -..++
T Consensus 342 ~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c-p~tgdL~~rallAleR~re~~~vI~~~l~~~ls---~-~~~l~ 416 (881)
T KOG0128|consen 342 MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC-PWTGDLWKRALLALERNREEITVIVQNLEKDLS---M-TVELH 416 (881)
T ss_pred ccccHHHHhhhhhhcccccccccccccccchhhcCC-chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH---H-HHHHH
Confidence 99999999999998864 333455667888888765 66667777766555665543332 223333311 1 11122
Q ss_pred HHHHHHHHHc------CCHHHHHHHHHHHHHhhhCCCc--cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 464 IKHANMERRL------GNLEDAFSLYEQAIAIEKGKEH--SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 464 ~~~a~~e~r~------g~~e~A~~iy~~Al~~~~~~~~--~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
+.+..+.++. .+++..++.|+.|......... ..+.-.+...|+.+++...++.+.||.|+...+.....+.
T Consensus 417 ~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i 496 (881)
T KOG0128|consen 417 NDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI 496 (881)
T ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH
Confidence 2222222222 2456777788888775542111 1223456788999999989999999999999998877777
Q ss_pred H-HHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001060 536 P-LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 536 ~-l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
. .|..|+.+|..+++ ...+|.++.+|+.... .+++..+|++.|..||..+|+++.+..+-.+....
T Consensus 497 ag~Wle~~~lE~~~g~---~~~~R~~~R~ay~~~~------~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr 563 (881)
T KOG0128|consen 497 AGKWLEAINLEREYGD---GPSARKVLRKAYSQVV------DPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPR 563 (881)
T ss_pred HHHHHHHHhHHHHhCC---chhHHHHHHHHHhcCc------CchhHHHHHHHHHHHHhccccHHHHhhhHHhhcch
Confidence 6 99999999999887 4457887777777543 34567799999999999999998887766555444
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=4e-20 Score=230.98 Aligned_cols=328 Identities=11% Similarity=-0.021 Sum_probs=279.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 193 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~ 193 (1169)
+|+..+|+.+++..+..+|.+.+++..++...+..|+++.|+..|++++...|.+.+.|...+..+. ..|++++|+..|
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~-~~g~~~~Ai~~l 133 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL-KSKQYATVADLA 133 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999988 889999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHH
Q 001060 194 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV 273 (1169)
Q Consensus 194 erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~ 273 (1169)
++++...+ ....+|...+..+...|+++.|..+|++++...+.....++..
T Consensus 134 ~~Al~l~P---~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-------------------------- 184 (656)
T PRK15174 134 EQAWLAFS---GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-------------------------- 184 (656)
T ss_pred HHHHHhCC---CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH--------------------------
Confidence 99999544 4677888889989999999999999998876633322211110
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh
Q 001060 274 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 353 (1169)
Q Consensus 274 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~ 353 (1169)
..+...+++++|+..|+.+++. .|.
T Consensus 185 ------------------------------------------------~~l~~~g~~~eA~~~~~~~l~~-----~~~-- 209 (656)
T PRK15174 185 ------------------------------------------------LSFLNKSRLPEDHDLARALLPF-----FAL-- 209 (656)
T ss_pred ------------------------------------------------HHHHHcCCHHHHHHHHHHHHhc-----CCC--
Confidence 0133456777788888887762 111
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHhhccChHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL----AHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~----A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
.....+...+..+...|++++|+..|++++...|.++.+|+.++..+...|++++ |+..|++++++. |++..++.
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~ 288 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVT 288 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 1122334445666789999999999999999999999999999999999999986 899999999987 88999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~ 509 (1169)
.++.++...|++++|+..|+++ +++.|++..++..++.++.+.|++++|+..|++++...|. .+.++...+..
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~a-l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~------~~~~~~~~a~a 361 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQS-LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV------TSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------chHHHHHHHHH
Confidence 9999999999999999999998 7899999999999999999999999999999999998763 23344455666
Q ss_pred HHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 510 LHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 510 ~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
+.. .|++++|+..|+++++..|++.
T Consensus 362 l~~-~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 362 LLQ-AGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHH-CCCHHHHHHHHHHHHHhChhhc
Confidence 655 9999999999999999998864
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=3.8e-20 Score=235.92 Aligned_cols=372 Identities=8% Similarity=-0.030 Sum_probs=284.3
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+.++.+++.++++|+.+|.+.++|..|+.++... +++++|+.+++++++.+|.+.. |..++.++...|++++|+.+|
T Consensus 63 g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~--g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 63 KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA--GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 4577999999999999999999999999988774 6999999999999999999999 999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH---HHH-----HhhhH---HHHH
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE---YEY-----MQQEW---SRVA 227 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~---~e~-----~~~~~---~~a~ 227 (1169)
++++...|.+.++++.++..+. ..+..+.|+..+++++. .+.. ....-|..... +.. ..+++ ++|+
T Consensus 140 ~~al~~~P~~~~~~~~la~~l~-~~~~~e~Al~~l~~~~~-~p~~-~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 140 TQALPRAPQTQQYPTEYVQALR-NNRLSAPALGAIDDANL-TPAE-KRDLEADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHH-HCCChHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 9999999999999999999887 78889999999987775 2210 00000000000 000 00111 2233
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCc
Q 001060 228 MIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGL 307 (1169)
Q Consensus 228 ~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 307 (1169)
..|++++..-.. . +
T Consensus 217 ~~~~~ll~~~~~---------------~---------------------------------------------------p 230 (765)
T PRK10049 217 AQYDALEALWHD---------------N---------------------------------------------------P 230 (765)
T ss_pred HHHHHHHhhccc---------------C---------------------------------------------------C
Confidence 333333221000 0 0
Q ss_pred chHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001060 308 TEAEELEK-YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC 386 (1169)
Q Consensus 308 ~~~~~~~k-~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~ 386 (1169)
........ .+..+..+ ...+++++|+..|+++++. .+..|.....| +++.+...|++++|+.+|++++...
T Consensus 231 ~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~-----~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 231 DATADYQRARIDRLGAL-LARDRYKDVISEYQRLKAE-----GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred ccchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhhcc-----CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 00000000 11112223 3557899999999998873 22235555566 4778889999999999999999877
Q ss_pred cCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc------------c--ChHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 387 ANY----PEYWIRYVLCMEASGSMDLAHNALARATHVFVK------------R--LPEIHLFAARFKEQNGDIDGARAAY 448 (1169)
Q Consensus 387 ~~~----~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p------------~--~~~l~~~~a~~~e~~g~~~~A~~~~ 448 (1169)
|.. .+.+..++..+...|++++|+.+|++++...++ + ...+++.++.++...|++++|+++|
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 665 467777777788899999999999999987631 1 2356788999999999999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001060 449 QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 528 (1169)
Q Consensus 449 ~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl 528 (1169)
+++ +...|++..+|+.++.++...|++++|+.+|++++.+.|++ +.++...+..... .|++++|..++++++
T Consensus 383 ~~a-l~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~------~~l~~~~a~~al~-~~~~~~A~~~~~~ll 454 (765)
T PRK10049 383 REL-AYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN------INLEVEQAWTALD-LQEWRQMDVLTDDVV 454 (765)
T ss_pred HHH-HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 998 78899999999999999999999999999999999998643 5688888887666 999999999999999
Q ss_pred hhcCCCHHHH
Q 001060 529 DHVQLSKPLL 538 (1169)
Q Consensus 529 ~~~p~s~~l~ 538 (1169)
+..|+++.+.
T Consensus 455 ~~~Pd~~~~~ 464 (765)
T PRK10049 455 AREPQDPGVQ 464 (765)
T ss_pred HhCCCCHHHH
Confidence 9999998544
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=6.2e-18 Score=215.69 Aligned_cols=498 Identities=11% Similarity=-0.024 Sum_probs=341.0
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+.++.+++.|+++|+.+|.+..+++.|++++... |+.++|+.+.+++++.+|.+..++..++.+ +++++|+.+|
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~--g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHF--GHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHH
Confidence 4566899999999999999999999999999985 599999999999999999999998888666 8999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHH-----HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001060 159 ERAVQGVTYSVDIWLHYCIFA-----INTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 233 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~-----~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~ 233 (1169)
++++...|.+.++.+..+..+ + ...+.+.+++.++ +.....+++...+...-.+++..+++|+.|+.+|.++
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l-~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNAL-RLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchh-hhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999999988888761 1 1234566666666 5545454445556666577788899999999999999
Q ss_pred Hhcchhh------HHHHHHHH-H--HHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccc--c-----------
Q 001060 234 LENPIQQ------LDRYFSSF-K--EFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEE--V----------- 291 (1169)
Q Consensus 234 L~~p~~~------~~~~~~~~-~--~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~--~----------- 291 (1169)
++..+.+ +..+|... . ....... ..+.....+..+....+....+.......+... .
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~-~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLDDRLLALQS-QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhc-hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 9983322 22222220 0 0000000 011100000000000111111110000000000 0
Q ss_pred --------C--------------------------------CccccccCCccccCcchHHHHHHHHH------------H
Q 001060 292 --------Q--------------------------------PDATEQTSKPVSAGLTEAEELEKYIA------------V 319 (1169)
Q Consensus 292 --------~--------------------------------~~~~e~~~~~~~~~~~~~~~~~k~i~------------~ 319 (1169)
. .+..+++......+.. ...++.. .
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM---LEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH---HHHHHhhccccCchhHHHHH
Confidence 0 0000111000000000 0000000 0
Q ss_pred HHHHHHH-----------------HHHHHHHHHHHHHhhccCC-c-----------------------------------
Q 001060 320 REEMYKK-----------------AKEFDSKIIGFETAIRRPY-F----------------------------------- 346 (1169)
Q Consensus 320 ~~~~y~~-----------------~~~~~~ai~~~e~al~r~~-~----------------------------------- 346 (1169)
...+|+. .+++.+|...|+.+...+- -
T Consensus 365 ~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (987)
T PRK09782 365 ARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPL 444 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccccc
Confidence 0111221 2334444444443332100 0
Q ss_pred ---------------------ccCCCChh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 001060 347 ---------------------HVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 403 (1169)
Q Consensus 347 ---------------------~v~pl~~~--~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~ 403 (1169)
..-+..|. +...|+.++.++.. ++..+|+..|.+++...|.+. ..+.++..+...
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~ 522 (987)
T PRK09782 445 AEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQV 522 (987)
T ss_pred chhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHC
Confidence 01112344 67788888888766 788889999999999988653 355556666789
Q ss_pred CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 404 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLY 483 (1169)
Q Consensus 404 g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy 483 (1169)
|++++|+..|++++... + ....|+.++.++.+.|++++|..+|+++ +++.|.+..++..++....+.|++++|...|
T Consensus 523 Gr~eeAi~~~rka~~~~-p-~~~a~~~la~all~~Gd~~eA~~~l~qA-L~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 523 EDYATALAAWQKISLHD-M-SNEDLLAAANTAQAAGNGAARDRWLQQA-EQRGLGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred CCHHHHHHHHHHHhccC-C-CcHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999987653 3 3456788899999999999999999998 7788988877776666666779999999999
Q ss_pred HHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHH
Q 001060 484 EQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDK 563 (1169)
Q Consensus 484 ~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~er 563 (1169)
+++++..| . +.+|..++.++.+ .|++++|...|++++++.|++..++..++.+....+. .+.+..+|++
T Consensus 600 ~~AL~l~P------~-~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~---~eeAi~~l~~ 668 (987)
T PRK09782 600 TRSLNIAP------S-ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD---IAQSREMLER 668 (987)
T ss_pred HHHHHhCC------C-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHH
Confidence 99999885 2 5688899988877 9999999999999999999999999999888887776 5668889999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 564 FLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 564 al~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
++...|+++ .++..........|+.+.+...+++..++-|+.
T Consensus 669 AL~l~P~~~---------~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 669 AHKGLPDDP---------ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999988776 578888888899999999999999999998764
No 27
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.87 E-value=3.2e-19 Score=198.72 Aligned_cols=444 Identities=14% Similarity=0.179 Sum_probs=279.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001060 118 VKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGL 197 (1169)
Q Consensus 118 ~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl 197 (1169)
.++..+|.+++.+|+.+..+|..|+.++.+.+.+.++.++|.+||..||++++||+.-|.++.+..-+.+.||.+|.++|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999999999999999977777999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCCccc---cCHHHHHHHH
Q 001060 198 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI----QQLDRYFSSFKEFAASRPLSEL---RTAEEVDAAA 270 (1169)
Q Consensus 198 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~----~~~~~~~~~~~~~~~~~~~~~~---~~~eea~~~~ 270 (1169)
. .++.+..||..|.++|++.-..-. .-++.+.... ..++..-..+..+......... ...++-.+
T Consensus 168 R---~npdsp~Lw~eyfrmEL~~~~Kl~---~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~-- 239 (568)
T KOG2396|consen 168 R---FNPDSPKLWKEYFRMELMYAEKLR---NRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAE-- 239 (568)
T ss_pred h---cCCCChHHHHHHHHHHHHHHHHHH---HHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHH--
Confidence 9 566699999999999987422211 1223333211 1222222222222111100000 00000000
Q ss_pred HHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHH-HHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 001060 271 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYIAVREE-----------MYKKAKEFDSKIIGFE 338 (1169)
Q Consensus 271 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~k~i~~~~~-----------~y~~~~~~~~ai~~~e 338 (1169)
....+.+... .+....+.++..+ +. ..+.+ .+.+..+.. .+...-+.+.+..+|+
T Consensus 240 --~~d~~kel~k---~i~d~~~~~~~~n---p~-----~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~e 306 (568)
T KOG2396|consen 240 --KFDFLKELQK---NIIDDLQSKAPDN---PL-----LWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYE 306 (568)
T ss_pred --HHHHHHHHHH---HHHHHHhccCCCC---Cc-----cHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHH
Confidence 0001111111 0000001111111 11 11111 111111100 0111113445556788
Q ss_pred HhhccCCcccCCCChhcHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHH
Q 001060 339 TAIRRPYFHVKPLSVTELENWHNYLDFIERD------GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA 412 (1169)
Q Consensus 339 ~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~------gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~v 412 (1169)
.+++ .-.+..+|..||++..+. ..+...+.+|+.+......++...-.|+..+.......+++.+
T Consensus 307 e~v~---------~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 307 EAVK---------TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHH---------HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 8876 223457899999987533 2456788899998888777777777776655544445556655
Q ss_pred HHHHH-HHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc----CCChHHHHHHHHHHHHHcCCHH-HHH-HHHHH
Q 001060 413 LARAT-HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET----SPGLLEAIIKHANMERRLGNLE-DAF-SLYEQ 485 (1169)
Q Consensus 413 l~rAl-~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~----~P~~~~~~~~~a~~e~r~g~~e-~A~-~iy~~ 485 (1169)
-.+.+ +.+ .++..+|+.....+.+... .+.-+|+.+...+ .......|.... +..... ... .++..
T Consensus 378 a~~l~~e~f-~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 378 AVKLTTELF-RDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS----EGDSLQEDTLDLIISA 450 (568)
T ss_pred HHHhhHHHh-cchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh----hccchhHHHHHHHHHH
Confidence 55555 444 6888999998887764322 2222333221111 122233344433 111121 222 23333
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001060 486 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 565 (1169)
Q Consensus 486 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral 565 (1169)
++.... +..-++-..|.++++. .|.+++||++|.+...+.|-+..++..++.||..+-.-+ +.++|.||++++
T Consensus 451 ~~s~~~-----~~~~tl~s~~l~~~~e-~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 451 LLSVIG-----ADSVTLKSKYLDWAYE-SGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRAL 523 (568)
T ss_pred HHHhcC-----CceeehhHHHHHHHHH-hcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHH
Confidence 333321 2223466788888888 777999999999999999999999999999998763222 688999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 566 MSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 566 ~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
...+.++ ++|..|+.||..+|..+.+..++.|+.+.+.+.
T Consensus 524 ~~fg~d~---------~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 524 REFGADS---------DLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHhCCCh---------HHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 9987655 699999999999999999999999999998764
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.6e-19 Score=198.09 Aligned_cols=432 Identities=13% Similarity=0.066 Sum_probs=306.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 193 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~ 193 (1169)
++++++|+++|..+|+..|+-+-++-+.+..+...|+++++++-+.++|.+.|.-+...+.-+.-.. .+|+.+++ +|
T Consensus 128 ~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E-~lg~~~ea--l~ 204 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE-QLGKFDEA--LF 204 (606)
T ss_pred cccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH-hhccHHHH--HH
Confidence 5799999999999999999988999999999999999999999999999999988888888777666 77888777 44
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH--HHHhcch-hhHHHHHHHHHHHHhcCCCccccCH-HHHHHH
Q 001060 194 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT--RILENPI-QQLDRYFSSFKEFAASRPLSELRTA-EEVDAA 269 (1169)
Q Consensus 194 erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~--r~L~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~-eea~~~ 269 (1169)
+--+..+-.+|....+-...-+.+..++ .+.+.+.|. |--..|. ..+..+|..|..-....+.+..-.. ......
T Consensus 205 D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 205 DVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred hhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 4444334344544444333333333332 233444443 1111222 2455555555432211111111101 111111
Q ss_pred HHHHhhCCCccch-hhhccccccCCccccccCCccccCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 001060 270 AVAVAAAPSETGA-EVKANEEEVQPDATEQTSKPVSAGLTE--AEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYF 346 (1169)
Q Consensus 270 ~~~~~~~~~e~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~ 346 (1169)
.+.++....+... ..+....+ ...+......+..+ .+.+...+..++-.+.-.+....+...|+.+|+
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~-----~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~---- 354 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEE-----CLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK---- 354 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHH-----hhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh----
Confidence 1111222111110 00000000 00000000001011 123333444555556666778888888999998
Q ss_pred ccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 347 HVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 347 ~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
+++.....+..++..+....+.++....|.++..++|.++++++..+++..-.+++++|..-|++++.+. |.+.-
T Consensus 355 ----l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~ 429 (606)
T KOG0547|consen 355 ----LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAY 429 (606)
T ss_pred ----cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhH
Confidence 7777777788888888888999999999999999999999999999999988999999999999999987 89999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 506 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~ 506 (1169)
.++.++-.+.+++.++++...|+.+ ++..|..++++..++.++..+++|++|.+.|++||++.+...-....+..+++-
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~-kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEA-KKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 9999999999999999999999998 788999999999999999999999999999999999987522111123345555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 507 SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 507 a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
+-++.+-.+++..|.+++++|++.+|.+..-+..++.|+..++. ++.+..+||+++..
T Consensus 509 a~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~l 566 (606)
T KOG0547|consen 509 ALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQL 566 (606)
T ss_pred hHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHH
Confidence 55544546899999999999999999999999999999999876 78889999998664
No 29
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.87 E-value=4.2e-22 Score=193.54 Aligned_cols=113 Identities=35% Similarity=0.618 Sum_probs=102.0
Q ss_pred hHhHHHHHHHHhhhh-CcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCc--ceeEeeeecc--ccCCCceE
Q 001060 723 VGSYFVGQYYQVLQQ-QPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSL--GSWNGGVL 797 (1169)
Q Consensus 723 vg~~Fv~~YY~~l~~-~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~--~~~i~~~d~q--~~~~~~il 797 (1169)
||+.||++||++|++ +|+.|++||++++++++|+|+ ....|.++|.+++.+|+.+ .+.|+++||| ++.+++|+
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~--~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~i~ 78 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGN--RPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGSIL 78 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTE--CEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSEEE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCc--hhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCcEE
Confidence 799999999999999 999999999666789999998 3445667789999999998 5689999999 57889999
Q ss_pred EEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEe
Q 001060 798 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 837 (1169)
Q Consensus 798 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~ 837 (1169)
|+|+|.++.++....++|+|+|+|.+.+++|+|.||||||
T Consensus 79 i~v~G~~~~~~~~~~~~F~q~FvL~~~~~~~~I~nd~~r~ 118 (118)
T PF02136_consen 79 ITVTGQFKEDDNPNPRRFSQTFVLVPQNNGYFIANDIFRF 118 (118)
T ss_dssp EEEEEEEEETTSEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEeEEEecCCCcccEEEEEEEEEEcCCEEEEEeeEEEC
Confidence 9999999999874369999999999999999999999997
No 30
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.87 E-value=8.2e-19 Score=196.36 Aligned_cols=392 Identities=19% Similarity=0.261 Sum_probs=295.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001060 125 DAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 125 e~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~ 204 (1169)
++-++.+|.+...|..+++-...+ .++++++.|++.+..+|.+...|..|+.-++ ...+++....+|.|+|..+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El-~skdfe~VEkLF~RCLvkv---- 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIEREL-ASKDFESVEKLFSRCLVKV---- 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH----
Confidence 677889999999999999876555 9999999999999999999999999999999 7889999999999999743
Q ss_pred CCHHHHHHHHHHHHHhh-hH----HHHHHHHHHHHhc-chh-hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCC
Q 001060 205 LSFPLWDKYIEYEYMQQ-EW----SRVAMIYTRILEN-PIQ-QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 277 (1169)
Q Consensus 205 ~s~~lw~~y~~~e~~~~-~~----~~a~~iY~r~L~~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~ 277 (1169)
.+.+||..|+.|-.+.+ .. +...+.|+-++.. -++ .--.+|..|..|....+
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~ve--------------------- 142 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVE--------------------- 142 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccc---------------------
Confidence 35789999999877642 22 2334445555543 111 12345666665522210
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHH
Q 001060 278 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELE 357 (1169)
Q Consensus 278 ~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~ 357 (1169)
. ..-|.+..+.+..++.|.++|..|+-. =-.
T Consensus 143 -a-----------------------------------------~gk~ee~QRI~~vRriYqral~tPm~n-------lEk 173 (656)
T KOG1914|consen 143 -A-----------------------------------------VGKYEENQRITAVRRIYQRALVTPMHN-------LEK 173 (656)
T ss_pred -c-----------------------------------------cccHHHHHHHHHHHHHHHHHhcCcccc-------HHH
Confidence 0 012344556777788899999744322 126
Q ss_pred HHHHHHHHHHHc-------------CChHHHHHHHHHHHHhc-------c-----------CCHHHHHHHHHHHHHcCC-
Q 001060 358 NWHNYLDFIERD-------------GDFNKVVKLYERCLIAC-------A-----------NYPEYWIRYVLCMEASGS- 405 (1169)
Q Consensus 358 ~W~~yl~~~~~~-------------gd~~~a~~lyeraL~~~-------~-----------~~~e~W~~~a~~l~~~g~- 405 (1169)
+|..|..|+..- .++..|+.+|+...-.. | ...++|.+++.+....+-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 899999998533 34556777777654332 1 123689999997654331
Q ss_pred -----h--HHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhhhcCCChHHHHH
Q 001060 406 -----M--DLAHNALARATHVFVKRLPEIHLFAARFKEQNGD--------------IDGARAAYQLVHTETSPGLLEAII 464 (1169)
Q Consensus 406 -----~--e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~--------------~~~A~~~~~~a~~~~~P~~~~~~~ 464 (1169)
+ ....-+|+.++... .-++++|+.++.++...++ .+++.++|+++...+.-.+..+++
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l-~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYL-GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12335778888655 8899999999999988888 788999999985555566788899
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHH
Q 001060 465 KHANMERRLGN---LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541 (1169)
Q Consensus 465 ~~a~~e~r~g~---~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~ 541 (1169)
.+++++...-+ .+....+|++++.....+ ++ .+|++|+.+..+..| ++.||.||.+|.+..-..-.++..-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~---~t--Lv~~~~mn~irR~eG-lkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDID---LT--LVYCQYMNFIRRAEG-LKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccC---Cc--eehhHHHHHHHHhhh-HHHHHHHHHHHhhccCCcchhhHHH
Confidence 99999987766 899999999999987432 32 379999999998666 9999999999998766556777777
Q ss_pred HHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001060 542 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 542 a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
+.+|.-+... -..+.++|+--|...++.+ +.-..|++|+...+|...++.+.+|..+.
T Consensus 407 A~mEy~cskD--~~~AfrIFeLGLkkf~d~p---------~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 407 ALMEYYCSKD--KETAFRIFELGLKKFGDSP---------EYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhcCC--hhHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7777766432 3457899999999999887 58999999999999999999999999887
No 31
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.86 E-value=3.6e-20 Score=224.76 Aligned_cols=254 Identities=19% Similarity=0.228 Sum_probs=229.6
Q ss_pred HHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCChHHHH
Q 001060 336 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-----PEYWIRYVLCMEASGSMDLAH 410 (1169)
Q Consensus 336 ~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~-----~e~W~~~a~~l~~~g~~e~A~ 410 (1169)
.|++.++ -+|+..-+|..|..|..+.++.++|+.+.+|||...... ..+|+.|..++..-|.-+...
T Consensus 1446 Dferlvr--------ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1446 DFERLVR--------SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred HHHHHHh--------cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 4777777 688899999999999999999999999999999886332 249999999988889888899
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 411 NALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 411 ~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
++|+||++.+ +...+|..+..++++.+.+++|-++|+..+.+ .-....+|++|++++.++++-++|+.++.+||...
T Consensus 1518 kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1518 KVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 9999999977 45679999999999999999999999997444 44789999999999999999999999999999999
Q ss_pred hCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001060 491 KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 491 ~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~ 570 (1169)
|.++| -.+...+|.++++ .|+.+++|.+|+..|...|...++|..|+++|..+++ .+.+|.+|||++...
T Consensus 1595 Pk~eH----v~~IskfAqLEFk-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR~lfeRvi~l~-- 1664 (1710)
T KOG1070|consen 1595 PKQEH----VEFISKFAQLEFK-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVRDLFERVIELK-- 1664 (1710)
T ss_pred chhhh----HHHHHHHHHHHhh-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHHHHHHHHHhcC--
Confidence 86544 5678899999998 9999999999999999999999999999999999988 667999999999975
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 571 SPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 571 ~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
++..++..++..||+||+.+||.+.+..|..|+.+++...
T Consensus 1665 ----l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1665 ----LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred ----CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999998654
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=1.1e-16 Score=204.49 Aligned_cols=261 Identities=11% Similarity=0.041 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
+.++.. ++..+|+..|.+++.+ .|... ....++..+...|++++|+..|++++...+. ...|+.++..+
T Consensus 484 G~~l~~-~~~~eAi~a~~~Al~~--------~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~al 552 (987)
T PRK09782 484 AKCYRD-TLPGVALYAWLQAEQR--------QPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTA 552 (987)
T ss_pred HHHHHh-CCcHHHHHHHHHHHHh--------CCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHH
Confidence 344444 6778899999999873 33322 2333445556899999999999998766444 56789999999
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 480 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~ 480 (1169)
...|++++|..+|+++++.. |....++..++......|++++|+..|+++ ++++|+ ..+|..++.++.++|++++|+
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A-L~l~P~-~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRS-LNIAPS-ANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999877 666666666666566779999999999998 789997 899999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHH
Q 001060 481 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQL 560 (1169)
Q Consensus 481 ~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l 560 (1169)
..|++++...|+ .+.++..++.++.. .|++++|+.+|+++++..|++..++..++......|+ .+.+..+
T Consensus 630 ~~l~~AL~l~Pd------~~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd---~~eA~~~ 699 (987)
T PRK09782 630 SDLRAALELEPN------NSNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD---MAATQHY 699 (987)
T ss_pred HHHHHHHHhCCC------CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 999999999864 36789999988887 9999999999999999999999999999999999888 6778999
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 561 VDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 561 ~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
|++++...|++. .|...+.+.+....+...+.+.+.|+..+-+..
T Consensus 700 l~~Al~l~P~~a---------~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 700 ARLVIDDIDNQA---------LITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHhcCCCCc---------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 999999888765 366777777777778888888888887776653
No 33
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=99.81 E-value=2.1e-20 Score=169.47 Aligned_cols=113 Identities=26% Similarity=0.449 Sum_probs=100.4
Q ss_pred hHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccCCC------ce
Q 001060 723 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNG------GV 796 (1169)
Q Consensus 723 vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~~~------~i 796 (1169)
-+.+||+.||..|+++|..|.+||.++|.++ |+|+.+.|.+. |.+++.-||.++++|.++||||.+++ +|
T Consensus 15 ~A~eFv~~YY~smD~rR~~i~rlY~~~atlv-WNGn~v~g~es---ls~ff~~LPsS~~qi~~lD~Qpv~dqat~~q~~v 90 (139)
T KOG4353|consen 15 AAEEFVNVYYSSMDKRRRGIGRLYLDNATLV-WNGNPVSGTES---LSEFFNMLPSSEFQINDLDCQPVHDQATGSQTTV 90 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhccceEE-EcCCcchhHHH---HHHHHHhCCCccccccccccccchhhcccccceE
Confidence 4789999999999999999999999997665 89997776654 57788889999999999999987653 69
Q ss_pred EEEEEEEEEecCccccceeEEEEEEEeeCCeEE----EEcceEEeccC
Q 001060 797 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYF----VLNDIFHFLDE 840 (1169)
Q Consensus 797 lv~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~----v~nDifr~~~~ 840 (1169)
||+|+|.++++|+ ..|.|.|||.|..+...|- |..|||||.|.
T Consensus 91 LvvvsGtVkFdG~-k~r~F~qt~ll~~e~~~~k~~~~v~Sd~fr~~d~ 137 (139)
T KOG4353|consen 91 LVVVSGTVKFDGN-KQRVFNQTFLLTAEDPPFKTVWKVASDCFRFQDW 137 (139)
T ss_pred EEEEeeeEEEcCC-ccccccceeEEeecCCccchhhhhhhhhhhhhhc
Confidence 9999999999997 7999999999999987666 99999999874
No 34
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=7.4e-15 Score=184.15 Aligned_cols=432 Identities=10% Similarity=-0.045 Sum_probs=301.0
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhCCHHHHH
Q 001060 78 VPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKY--ADHEARVGSMDKVV 155 (1169)
Q Consensus 78 ~~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~--a~~e~~~~~~e~A~ 155 (1169)
.+....+++.|.++++.+|.+..+...|+.++-.. |+.++|+.++++++ .|.+..+...+ +.++...|++++|+
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc--CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45577999999999999999954444777777664 59999999999999 55555555555 77999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 235 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~ 235 (1169)
++|+++++..|.+.+++...+..+. ..++.++|++.+++++...|... .+...+.+....++..+|...|+++++
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~----~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQ----NYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchH----HHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999999999999998877777 77999999999999998666521 122223333335566569999999999
Q ss_pred cchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001060 236 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315 (1169)
Q Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k 315 (1169)
..+.+.+.++..+..+...... ..+.. +...-.+.+. ..+..+-
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~------~~a~~----l~~~~p~~f~--------------------------~~~~~~l 241 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIV------EPALR----LAKENPNLVS--------------------------AEHYRQL 241 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCc------HHHHH----HHHhCccccC--------------------------HHHHHHH
Confidence 9777666666666554332211 11111 1111111111 1111100
Q ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHhhccCCcccCCCChhc----HHHHHHHHHHHHHcCChHHHHHHHH
Q 001060 316 YIAVREEMY-----------KKAKEFDSKIIGFETAIRRPYFHVKPLSVTE----LENWHNYLDFIERDGDFNKVVKLYE 380 (1169)
Q Consensus 316 ~i~~~~~~y-----------~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~----~~~W~~yl~~~~~~gd~~~a~~lye 380 (1169)
-.......- ..-...+.++..++..+.+ .+ ..|.. ...-..++-.+...+++.+|+..|+
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~----~~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR----WG-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh----cc-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 000000000 0001345566667776653 11 22222 2222233444467799999999999
Q ss_pred HHHHhc---cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 381 RCLIAC---ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 381 raL~~~---~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
...... |.| +-..+|..+...++.++|..+|..++.-.++ ........+...+...+++++|..+++++
T Consensus 317 ~l~~~~~~~P~y--~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~- 393 (822)
T PRK14574 317 AMEAEGYKMPDY--ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNY- 393 (822)
T ss_pred HhhhcCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHH-
Confidence 987554 444 4445677788899999999999998874321 12221233344455789999999999987
Q ss_pred hh---------------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001060 453 TE---------------TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 517 (1169)
Q Consensus 453 ~~---------------~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 517 (1169)
.+ -+|+..+.....+..+.-.|++.+|++++++.+...|.+ +.|++.+++++.. .|.+
T Consensus 394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n------~~l~~~~A~v~~~-Rg~p 466 (822)
T PRK14574 394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN------QNLRIALASIYLA-RDLP 466 (822)
T ss_pred HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCCH
Confidence 33 244566677788888889999999999999999988654 7799999999887 9999
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 518 EKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 518 e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.+|+.+++.++.+.|++..+....+.-.+.+++ .+.++.+.+..+...|+++
T Consensus 467 ~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e---~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 467 RKAEQELKAVESLAPRSLILERAQAETAMALQE---WHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhhCCCch
Confidence 999999999999999999888877777777665 6678888888888888776
No 35
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=8.4e-16 Score=183.25 Aligned_cols=408 Identities=11% Similarity=0.104 Sum_probs=278.3
Q ss_pred CCCchHHHHHHHHHHhCCCC-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----CHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSD-FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG----SMDK 153 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d-~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~----~~e~ 153 (1169)
+.+++++..|.++++.++++ .=..+.|++++.. .|+++.+..+|+++++..|+|...-+.++.++...+ ..++
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~--~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK--RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHH--hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 34778888888888888877 5666778887776 458888888888888888888888888887777664 5677
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001060 154 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY--LSFPLWDKYIEYEYMQQEWSRVAMIYT 231 (1169)
Q Consensus 154 A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~--~s~~lw~~y~~~e~~~~~~~~a~~iY~ 231 (1169)
|..+..++++..|.+.+.|+..+.++. .+++-....+|.+|+...-... ....+-...+.+....|.+..|...|.
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e--~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLE--QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 888888888888888888888877765 4566666777777774321111 123344444455555677777777777
Q ss_pred HHHhc--chhh--------HHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhh-CCCccchhhhccccccCCccccccC
Q 001060 232 RILEN--PIQQ--------LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAA-APSETGAEVKANEEEVQPDATEQTS 300 (1169)
Q Consensus 232 r~L~~--p~~~--------~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~e~~~ 300 (1169)
+++.. +..+ +..-|+.....+. +...+.|.. +|. .+.+ +|..++.
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~------l~~~~~A~e----~Yk~Ilke------------hp~YId~-- 532 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEE------LHDTEVAEE----MYKSILKE------------HPGYIDA-- 532 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHh------hhhhhHHHH----HHHHHHHH------------CchhHHH--
Confidence 77765 1111 1123333322211 111111111 110 0000 1111110
Q ss_pred CccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001060 301 KPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYE 380 (1169)
Q Consensus 301 ~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lye 380 (1169)
|+ .++.+-+......+++..+..++. .+..++.+|..++.|+....++..+.+-|+
T Consensus 533 ---------------yl-Rl~~ma~~k~~~~ea~~~lk~~l~--------~d~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 533 ---------------YL-RLGCMARDKNNLYEASLLLKDALN--------IDSSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred ---------------HH-HhhHHHHhccCcHHHHHHHHHHHh--------cccCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 11 011223344567778888888887 788888999999999888877777777777
Q ss_pred HHHHhccCC--HHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001060 381 RCLIACANY--PEYWIRYVLCMEAS------------GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 381 raL~~~~~~--~e~W~~~a~~l~~~------------g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
+.+..--.. .-.-+.++.++... +..+.|+.+|.++++.+ |.+..+-.-.|.++-..|++.+|+.
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHH
Confidence 777653333 33344445444331 23567788888888766 6666666667889999999999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 447 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 526 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~k 526 (1169)
+|.++ .+..-++..+|++++.++..+|+|-.|+..|+.++..+-.+ +.+.+...+++.++. .|.+.+|...+.+
T Consensus 668 IFsqV-rEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~----~~~~vl~~Lara~y~-~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 668 IFSQV-REATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK----NRSEVLHYLARAWYE-AGKLQEAKEALLK 741 (1018)
T ss_pred HHHHH-HHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCHHHHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 99997 55555678899999999999999999999999999987533 337788899999888 8889999999999
Q ss_pred HhhhcCCCHHHHHHHHHhH
Q 001060 527 SLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 527 Al~~~p~s~~l~~~~a~~E 545 (1169)
|+...|.+..+..+++...
T Consensus 742 a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 742 ARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHhCCccchHHhHHHHHH
Confidence 9999999998877655443
No 36
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=1.7e-15 Score=179.48 Aligned_cols=279 Identities=13% Similarity=0.088 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC----HHHHHH
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS----VDIWLH 174 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s----~~lw~~ 174 (1169)
+..++.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+.+|++++...+.. ...|..
T Consensus 35 ~~~~y~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 112 (389)
T PRK11788 35 LSRDYFKGLNFLL--NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE 112 (389)
T ss_pred ccHHHHHHHHHHh--cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3444444444443 4688889999999999999888888999999889999999999998888753222 245666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhc
Q 001060 175 YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAAS 254 (1169)
Q Consensus 175 y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~ 254 (1169)
++..+. ..|++++|+.+|+++++. ++.....+..++......|++++|..+|+++++..+.+....
T Consensus 113 La~~~~-~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------- 178 (389)
T PRK11788 113 LGQDYL-KAGLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------- 178 (389)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------
Confidence 677666 678888888888888874 333556677777777777888888888877765422110000
Q ss_pred CCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 255 RPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI 334 (1169)
Q Consensus 255 ~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai 334 (1169)
...+...+...|...+++++++
T Consensus 179 ----------------------------------------------------------~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 179 ----------------------------------------------------------IAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHhCCCHHHHH
Confidence 0001111223344455555555
Q ss_pred HHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCChHHHHHHH
Q 001060 335 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-PEYWIRYVLCMEASGSMDLAHNAL 413 (1169)
Q Consensus 335 ~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~-~e~W~~~a~~l~~~g~~e~A~~vl 413 (1169)
..|+++++ .++.....|..++..+...|++++|+.+|++++...|.+ ..+|..++..+...|++++|...+
T Consensus 201 ~~~~~al~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 201 ALLKKALA--------ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred HHHHHHHh--------HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55666555 334444555555555555666666666666666555443 344555555555566666666666
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 414 ARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 414 ~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
+++++.. |+. .++..++.++.+.|++++|+.+|+++ ++..|++..+
T Consensus 273 ~~~~~~~-p~~-~~~~~la~~~~~~g~~~~A~~~l~~~-l~~~P~~~~~ 318 (389)
T PRK11788 273 RRALEEY-PGA-DLLLALAQLLEEQEGPEAAQALLREQ-LRRHPSLRGF 318 (389)
T ss_pred HHHHHhC-CCc-hHHHHHHHHHHHhCCHHHHHHHHHHH-HHhCcCHHHH
Confidence 6665554 333 23355555566666666666666655 4445555433
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.75 E-value=3.9e-15 Score=176.29 Aligned_cols=309 Identities=15% Similarity=0.128 Sum_probs=210.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHH
Q 001060 138 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY-LSFPLWDKYIEY 216 (1169)
Q Consensus 138 W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~-~s~~lw~~y~~~ 216 (1169)
++..+......|++++|+..|++++...|.+..+|...+.++. ..|++++|..++++++....... .....|..++.
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~- 115 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFR-RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ- 115 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-
Confidence 4444666778888999999999999988888888888888887 78888888888888876211100 00112222222
Q ss_pred HHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccc
Q 001060 217 EYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 296 (1169)
Q Consensus 217 e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 296 (1169)
T Consensus 116 -------------------------------------------------------------------------------- 115 (389)
T PRK11788 116 -------------------------------------------------------------------------------- 115 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHH
Q 001060 297 EQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVV 376 (1169)
Q Consensus 297 e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~ 376 (1169)
+|...++++.|+..|+++++ .++.....+..++..+...|++++|+
T Consensus 116 --------------------------~~~~~g~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 116 --------------------------DYLKAGLLDRAEELFLQLVD--------EGDFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred --------------------------HHHHCCCHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHHHhchHHHHH
Confidence 33344455555555555554 23444555666666666777777777
Q ss_pred HHHHHHHHhccCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 377 KLYERCLIACANYP-----EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 377 ~lyeraL~~~~~~~-----e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
.+|++++...+... .+|..++..+...|++++|..+|+++++.. |+....++.++.++.+.|++++|..+|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777776655432 256667777777888888888888888876 677778888888888888888888888887
Q ss_pred hhhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 452 HTETSPGL-LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 452 ~~~~~P~~-~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
.+..|.+ ..++..++.++...|++++|...+++++...|+ ..++..++.++.+ .|++++|+.+|+++++.
T Consensus 241 -~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-------~~~~~~la~~~~~-~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 241 -EEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG-------ADLLLALAQLLEE-QEGPEAAQALLREQLRR 311 (389)
T ss_pred -HHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHH-hCCHHHHHHHHHHHHHh
Confidence 5556665 356777788888888888888888888887653 1234667777666 88888888888888888
Q ss_pred cCCCHHHHHHHHHhHhh--CCC-hhHHHHHHHHHHHHhhcCCCCC
Q 001060 531 VQLSKPLLEALIHFESI--QSS-PKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 531 ~p~s~~l~~~~a~~E~~--~~~-~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.|++..+..-+..+... .+. .+.++.++..+++.+...|++.
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 88877555333222211 112 1234556667777777666643
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=5.7e-14 Score=167.13 Aligned_cols=361 Identities=17% Similarity=0.150 Sum_probs=244.6
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+.++.+++.+..+|+++|.++.+|..|+.+++.. |+++++....-.+-.+.|.+.++|+.++++-..+|+++.|+-+|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4577888999999999999999999999999985 59999998888888999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC-CC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD-YL-SFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d-~~-s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
.|+++..|.+..+...++.++. ..|+...|...|.+++...|.. +. ...+-..++.+....++-++|.+++..++..
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~-~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQ-KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHH-HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999888 7899999999999999987721 11 1122223333344444446666666665542
Q ss_pred --chhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 237 --PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 237 --p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
.....+.+
T Consensus 310 ~~~~~~~ed~---------------------------------------------------------------------- 319 (895)
T KOG2076|consen 310 EKDEASLEDL---------------------------------------------------------------------- 319 (895)
T ss_pred ccccccccHH----------------------------------------------------------------------
Confidence 00000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------cCCcccCCCChhcHHHHHHHHH-HHHHcCChH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIR--------------------RPYFHVKPLSVTELENWHNYLD-FIERDGDFN 373 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~--------------------r~~~~v~pl~~~~~~~W~~yl~-~~~~~gd~~ 373 (1169)
....++|.+.+.++.++....+... .+.+-+...-...+.+.+..+. +.++.....
T Consensus 320 ---ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~ 396 (895)
T KOG2076|consen 320 ---NILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELL 396 (895)
T ss_pred ---HHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchH
Confidence 1111222222222222222111111 0011111111223333122221 222223333
Q ss_pred HHHHHHHHHHHh---ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 374 KVVKLYERCLIA---CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450 (1169)
Q Consensus 374 ~a~~lyeraL~~---~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 450 (1169)
.++.. ...+. .....++++.++..|...|++.+|+..|..++....-++.-+|...|.++...|.+++|...|++
T Consensus 397 e~ll~--~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 397 EALLH--FLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred HHHHH--HHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 33222 22222 23567899999999999999999999999998766456677999999999999999999999999
Q ss_pred HhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC---CCccCchHHHHHHHHHHHHHHhCCHHH
Q 001060 451 VHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG---KEHSQTLPMLYAQYSRFLHLVSRNAEK 519 (1169)
Q Consensus 451 a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~---~~~~~~~~~l~~~~a~~~~~~~g~~e~ 519 (1169)
+ +.+.|++.++.+.++.++.++|+.++|...++..+.-++. .+...-.--+..++..++.. .|+.++
T Consensus 475 v-l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~-~gk~E~ 544 (895)
T KOG2076|consen 475 V-LILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ-VGKREE 544 (895)
T ss_pred H-HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH-hhhHHH
Confidence 8 7889999999999999999999999999998876632211 01111112245667777666 777665
No 39
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=6.5e-14 Score=167.38 Aligned_cols=445 Identities=14% Similarity=0.053 Sum_probs=289.0
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
...+.-.|..+-+++-.+--.|+.-..++...+....+.|...|...+...|.|.-+.+--|.+....++|-.|..+|.+
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~ 189 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKK 189 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34555666666666666666666555554443333356777777777777777777777777777777777777777777
Q ss_pred HHhccCCC-----HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh---hhHHHHHHHHHH
Q 001060 161 AVQGVTYS-----VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ---QEWSRVAMIYTR 232 (1169)
Q Consensus 161 aL~~~P~s-----~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~---~~~~~a~~iY~r 232 (1169)
+|..+|.. +.+|+|+++ +++.+.|+..|+||++. |+.+......+..+.+.. ..++.+..++.+
T Consensus 190 al~inp~~~aD~rIgig~Cf~k-----l~~~~~a~~a~~ralqL---dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ 261 (1018)
T KOG2002|consen 190 ALRINPACKADVRIGIGHCFWK-----LGMSEKALLAFERALQL---DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQR 261 (1018)
T ss_pred HHhcCcccCCCccchhhhHHHh-----ccchhhHHHHHHHHHhc---ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 77777643 334544443 34577777777777773 334544555555544443 335666777777
Q ss_pred HHhcchhhHHHHHHHHHHHHhcCCCccccCH-HHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001060 233 ILENPIQQLDRYFSSFKEFAASRPLSELRTA-EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 311 (1169)
Q Consensus 233 ~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 311 (1169)
+..+.+.+-..+-.....|--.......... +-+. .. + ......++
T Consensus 262 ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai-------~~--------t------------------~~~~~~ae 308 (1018)
T KOG2002|consen 262 AYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI-------KN--------T------------------ENKSIKAE 308 (1018)
T ss_pred HHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH-------Hh--------h------------------hhhHHHHH
Confidence 7666333222221111111111000000000 0000 00 0 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFIERDGDFNKVVKLYERCLIACANYP 390 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~-~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~ 390 (1169)
.. |. ++..|...++|++|...|-.+++ .++.+ +-....+++.+...|+++.++..|++.+...|++.
T Consensus 309 s~--Y~--~gRs~Ha~Gd~ekA~~yY~~s~k--------~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 309 SF--YQ--LGRSYHAQGDFEKAFKYYMESLK--------ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred HH--HH--HHHHHHhhccHHHHHHHHHHHHc--------cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence 00 22 34578889999999999999988 45544 55566778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC----ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh----cCCChHHH
Q 001060 391 EYWIRYVLCMEASG----SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE----TSPGLLEA 462 (1169)
Q Consensus 391 e~W~~~a~~l~~~g----~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~----~~P~~~~~ 462 (1169)
+.-.-++.++...+ ..+.|.+++.++++.. |.+.+.|+.++.+++...- -.++.+|.+|... -.+=-+++
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999887654 5688999999999987 8899999999999987554 4447777776211 12223567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh---CCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEK---GKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~---~~~~-~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
..+.+.+..++|++++|+..|++|+.... +.+. ..+.-++-.++++++.. .++++.|-++|+..++.+|.-.+-+
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~-l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE-LHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHCchhHHHH
Confidence 88899999999999999999999998722 1111 01222346778888776 8899999999999999998766555
Q ss_pred HHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 001060 539 EALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGL 593 (1169)
Q Consensus 539 ~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~ 593 (1169)
..+.-|....+. ...+..++..++..+..++ .+|..+.++...
T Consensus 534 lRl~~ma~~k~~---~~ea~~~lk~~l~~d~~np---------~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 534 LRLGCMARDKNN---LYEASLLLKDALNIDSSNP---------NARSLLGNLHLK 576 (1018)
T ss_pred HHhhHHHHhccC---cHHHHHHHHHHHhcccCCc---------HHHHHHHHHHHh
Confidence 555444443333 3456777888888877776 366666655443
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.1e-15 Score=176.77 Aligned_cols=302 Identities=13% Similarity=0.087 Sum_probs=252.4
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 001060 104 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY 183 (1169)
Q Consensus 104 ~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~ 183 (1169)
.++..++.+.+=+-.+|..+|++.-...++.......++..+..+.+|++|+++|+.+-+..|.-++---.|-..+. +.
T Consensus 322 ~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW-HL 400 (638)
T KOG1126|consen 322 GLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW-HL 400 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH-HH
Confidence 33444443333366789999999778888888777889999999999999999999999999977665555555544 32
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCH
Q 001060 184 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 263 (1169)
Q Consensus 184 ~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1169)
.+ +-+..++-+-| +.+++.+..-|...+.+..-+++.+.|+++|+|++++.+...- .|..
T Consensus 401 q~-~v~Ls~Laq~L--i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY-ayTL---------------- 460 (638)
T KOG1126|consen 401 QD-EVALSYLAQDL--IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY-AYTL---------------- 460 (638)
T ss_pred Hh-hHHHHHHHHHH--HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch-hhhh----------------
Confidence 22 22333443333 3477789999999999999999999999999999998553110 0110
Q ss_pred HHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001060 264 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRR 343 (1169)
Q Consensus 264 eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r 343 (1169)
++.-+..+++++.|...|+.+|+
T Consensus 461 --------------------------------------------------------lGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 461 --------------------------------------------------------LGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred --------------------------------------------------------cCChhhhhHHHHhHHHHHHhhhc-
Confidence 11123456778889999999999
Q ss_pred CCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc
Q 001060 344 PYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 423 (1169)
Q Consensus 344 ~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~ 423 (1169)
.++....+|.-++..+.++++++.|...|++|+..+|.+.-+-..++.++.+.|+.|+|+.+|++|+.+. |+
T Consensus 484 -------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~k 555 (638)
T KOG1126|consen 484 -------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PK 555 (638)
T ss_pred -------CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999987 89
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
++...+..+.++...+++++|+..++++ .++.|+...++..++.++.++|+.+.|...|.-|+.++|.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeL-k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEEL-KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHH-HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999999999999999999999997 8999999999999999999999999999999999999874
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.1e-14 Score=158.88 Aligned_cols=364 Identities=13% Similarity=0.146 Sum_probs=253.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH--HH
Q 001060 101 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC--IF 178 (1169)
Q Consensus 101 aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~--~~ 178 (1169)
..+..+.++.+ .+.+.+|+..|...+...|-+=..|..+.++... .+. ....+..-| +...|+.-. ..
T Consensus 166 llYL~Gvv~k~--~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~----~~~l~~~l~-~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 166 LLYLYGVVLKE--LGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEI----LSILVVGLP-SDMHWMKKFFLKK 235 (559)
T ss_pred HHHHHHHHHHh--hchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHH----HHHHHhcCc-ccchHHHHHHHHH
Confidence 33344555555 3689999999999999999998888888776532 222 222222222 224454321 11
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhH---HHHHHHHHHHHhcC
Q 001060 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQL---DRYFSSFKEFAASR 255 (1169)
Q Consensus 179 ~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~---~~~~~~~~~~~~~~ 255 (1169)
........++++.-+++.+. +|.- .+.-|-..-+.....+.+++.|..+|+.+++..+..+ +.+=+.+ |+.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~-~gf~-~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSS-VGFP-NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccCC-ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 11233478888888888877 4432 1223333333344456789999999999999855433 3222221 11110
Q ss_pred CCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 256 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKII 335 (1169)
Q Consensus 256 ~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~ 335 (1169)
. ...+-++..++ .+.++..+ ..-.-++.|.-.++-+.|+.
T Consensus 312 ~-------skLs~LA~~v~-~idKyR~E--------------------------------TCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 312 K-------SKLSYLAQNVS-NIDKYRPE--------------------------------TCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred h-------HHHHHHHHHHH-HhccCCcc--------------------------------ceeeehhHHHHHHhHHHHHH
Confidence 0 00001111111 01111110 11112456777788899999
Q ss_pred HHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001060 336 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 415 (1169)
Q Consensus 336 ~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~r 415 (1169)
.|+++|+ ++|.-+.+|..++.=+.+.++...|+..|++|+..||.+...|+-+++.++-.+-..=|+-.|+|
T Consensus 352 YFkRALk--------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 352 YFKRALK--------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHh--------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 9999999 99999999999998778899999999999999999999999999999999999988899999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--hCC
Q 001060 416 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE--KGK 493 (1169)
Q Consensus 416 Al~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~--~~~ 493 (1169)
|++.- |+++.+|..+|.++++.+++++|.++|.++ +...-.+..++.+++.++.++++.++|-..|++.++.. -+.
T Consensus 424 A~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykra-i~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~ 501 (559)
T KOG1155|consen 424 ALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRA-ILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE 501 (559)
T ss_pred HHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 99976 999999999999999999999999999998 66666677899999999999999999999999999843 111
Q ss_pred CccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 494 EHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 494 ~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
..+..-..-+.++.++.+ .+++++|-....+++..
T Consensus 502 -~~~~t~ka~~fLA~~f~k-~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 502 -IDDETIKARLFLAEYFKK-MKDFDEASYYATLVLKG 536 (559)
T ss_pred -cchHHHHHHHHHHHHHHh-hcchHHHHHHHHHHhcC
Confidence 112122234457777776 88899988776666543
No 42
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.73 E-value=2.3e-13 Score=175.34 Aligned_cols=421 Identities=10% Similarity=0.057 Sum_probs=284.5
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFP--LCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P--~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
.+.......+...+. ...+..+...+.+ .|++.+|+++|+.+..... .+.-++..++..+.+.+..+.|..+|+.
T Consensus 355 ~~~~~~~~~~~~~~~-~~~~~~~y~~l~r--~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 355 NSLAAYNGGVSGKRK-SPEYIDAYNRLLR--DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred hhHHHhccccCCCCC-chHHHHHHHHHHH--CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334444444444444 3334444443444 3689999999999988653 3445556677888889999999999987
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh-
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ- 239 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~- 239 (1169)
+.. .+...|...+..+. ..++.+.|+++|+++++ .|..+ +...|...+....+.|+++.|..+|+++.+....
T Consensus 432 M~~---pd~~Tyn~LL~a~~-k~g~~e~A~~lf~~M~~-~Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P 505 (1060)
T PLN03218 432 IRN---PTLSTFNMLMSVCA-SSQDIDGALRVLRLVQE-AGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505 (1060)
T ss_pred cCC---CCHHHHHHHHHHHH-hCcCHHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 765 46777877777776 78899999999999887 44332 4577888888888899999999999887653111
Q ss_pred hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH
Q 001060 240 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV 319 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~ 319 (1169)
+. ..| ..
T Consensus 506 dv-vTy------------------------------------------------------------------------na 512 (1060)
T PLN03218 506 NV-HTF------------------------------------------------------------------------GA 512 (1060)
T ss_pred CH-HHH------------------------------------------------------------------------HH
Confidence 11 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---ccCCHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA---CANYPEYWIRY 396 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~---~~~~~e~W~~~ 396 (1169)
+...|.+.+++++|+..|++.... . + ..+...|..++..+.+.|++++|..+|++.... ...+...|..+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~---G---v-~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSK---N---V-KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHc---C---C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 123455666677777777776542 1 1 123567888888778888888888888887653 22345577777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cCCChHHHHHHHHHHHHHcCC
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE-TSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
+..+.+.|++++|..+|++..+...+.+...|..+...+.+.|++++|+.+|++.... +.|+ ...|..++..+.+.|+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC
Confidence 7777788888888888888777654556677888888888888888888888876221 2443 5567777778888888
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh-cCCCHHHHHHHHHhHhhCCChhHH
Q 001060 476 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH-VQLSKPLLEALIHFESIQSSPKQI 554 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~-~p~s~~l~~~~a~~E~~~~~~~~~ 554 (1169)
+++|..+|+.+++... ......|..++..+.+ .|++++|+++|++..+. ...+...|..++......+. +
T Consensus 665 ~eeA~~l~~eM~k~G~-----~pd~~tynsLI~ay~k-~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~---~ 735 (1060)
T PLN03218 665 LDKAFEILQDARKQGI-----KLGTVSYSSLMGACSN-AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ---L 735 (1060)
T ss_pred HHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC---H
Confidence 8888888888776532 1123467777777666 88888888888877653 12245566666666666665 5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001060 555 DFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 555 ~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
+.+..+|+++...+-... ...|...+.-..+.|+++.+.++..++.+.
T Consensus 736 eeAlelf~eM~~~Gi~Pd--------~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPN--------TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 667777777655432111 136677777777788888888888777665
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=5.4e-14 Score=156.45 Aligned_cols=437 Identities=12% Similarity=0.035 Sum_probs=285.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 001060 138 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 217 (1169)
Q Consensus 138 W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e 217 (1169)
.+..+..+.+.++|++|++.|..++..+|+.+-++.+.+-.+. ..|+.+++.+---+||+..+. -......-..-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~-~lgd~~~Vied~TkALEl~P~---Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYE-SLGDWEKVIEDCTKALELNPD---YVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHH-HHhhHHHHHHHHHHHhhcCcH---HHHHHHHHHHHH
Confidence 4556778889999999999999999999987667777766666 789999988888888884432 222222222333
Q ss_pred HHhhhHHHHHHHHHHHHhc---chh----hHHHHHHHHHHHHhcC----CCccccCHHHHHHHHHHHhhCCCccchhhhc
Q 001060 218 YMQQEWSRVAMIYTRILEN---PIQ----QLDRYFSSFKEFAASR----PLSELRTAEEVDAAAVAVAAAPSETGAEVKA 286 (1169)
Q Consensus 218 ~~~~~~~~a~~iY~r~L~~---p~~----~~~~~~~~~~~~~~~~----~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~ 286 (1169)
+..|+++.|..=..-..-+ ... -.++..+......... +-...+..-..+. ..+..+..+
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~------syf~sF~~~--- 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA------SYFGSFHAD--- 264 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH------HHHhhcccc---
Confidence 3445555543211111111 000 1122222211110000 0001111111110 001111000
Q ss_pred cccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCc---ccCCCChhc---HHHH
Q 001060 287 NEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK-AKEFDSKIIGFETAIRRPYF---HVKPLSVTE---LENW 359 (1169)
Q Consensus 287 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~-~~~~~~ai~~~e~al~r~~~---~v~pl~~~~---~~~W 359 (1169)
... ............+.+ .++.+|.. ...|+.+...+.+.+.- ++ +++.+|..- ....
T Consensus 265 ---------~~~--~~~~~~~ksDa~l~~---~l~~l~~~~~e~Y~~a~~~~te~~~~-~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 265 ---------PKP--LFDNKSDKSDAALAE---ALEALEKGLEEGYLKAYDKATEECLG-SESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred ---------ccc--cccCCCccchhhHHH---HHHHHHhhCchhHHHHHHHHHHHhhh-hhhhccccccchhHHHHHHHH
Confidence 000 000000001111111 11222222 12344444444443321 11 112122110 1222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC
Q 001060 360 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 439 (1169)
Q Consensus 360 ~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g 439 (1169)
..-+.|..-.|+...+...|..++.+.+....++++++..|...++.++-.+.|.+|..+. |.++.+|+..+++..-.+
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 2234455567899999999999999999999999999999999999999999999999988 899999999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHH
Q 001060 440 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 519 (1169)
Q Consensus 440 ~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~ 519 (1169)
++++|..-|+++ +.++|++.-.+++++.+++|++.+++++..|+.++..+|. .|++|..++.+|.. .++++.
T Consensus 409 q~e~A~aDF~Ka-i~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~------~~Evy~~fAeiLtD-qqqFd~ 480 (606)
T KOG0547|consen 409 QYEEAIADFQKA-ISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN------CPEVYNLFAEILTD-QQQFDK 480 (606)
T ss_pred HHHHHHHHHHHH-hhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CchHHHHHHHHHhh-HHhHHH
Confidence 999999999998 8999999999999999999999999999999999999964 37899999999988 889999
Q ss_pred HHHHHHHHhhhcCC------CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 001060 520 ARQILVDSLDHVQL------SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGL 593 (1169)
Q Consensus 520 Ar~i~~kAl~~~p~------s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~ 593 (1169)
|.+.|.+|+++.|. +...+..-+.+... . .++++.+..|+.++++..|.+. ........|+..
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-w-k~d~~~a~~Ll~KA~e~Dpkce---------~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-W-KEDINQAENLLRKAIELDPKCE---------QAYETLAQFELQ 549 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhc-h-hhhHHHHHHHHHHHHccCchHH---------HHHHHHHHHHHH
Confidence 99999999999998 55444333333222 1 1348889999999999876543 578888999999
Q ss_pred hCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhh
Q 001060 594 FGDAQLIKKAEDRHARLFLPHRSTSELRKRHAED 627 (1169)
Q Consensus 594 ~Gd~~~i~~v~~R~~~~~~~~~~~~~~~kr~~~~ 627 (1169)
.|+++.+..+.++...+-.. +.++.++..
T Consensus 550 ~~~i~eAielFEksa~lArt-----~~E~~~a~s 578 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSAQLART-----ESEMVHAYS 578 (606)
T ss_pred HhhHHHHHHHHHHHHHHHHh-----HHHHHHHHH
Confidence 99999999999998877643 445554433
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=9e-14 Score=174.48 Aligned_cols=408 Identities=8% Similarity=-0.080 Sum_probs=284.1
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHH--HHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTAL--LEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE 156 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L--~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~ 156 (1169)
+..+.++..+++++ +|.+......+ +..+.. +|++++|+.+|+++++.+|++..++..++..+...++.++|++
T Consensus 82 G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~--~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 82 GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRN--EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 56789999999999 55554555444 668777 4699999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 157 VYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 157 l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
.+++++...|..... +..+.+.. ..++..+|++.|+++++.. +....++..|..-+...|-...|.++.++--..
T Consensus 158 ~l~~l~~~dp~~~~~-l~layL~~-~~~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~ 232 (822)
T PRK14574 158 QATELAERDPTVQNY-MTLSYLNR-ATDRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL 232 (822)
T ss_pred HHHHhcccCcchHHH-HHHHHHHH-hcchHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc
Confidence 999999999874433 44444443 3566666999999999954 446778888888888777777776655543222
Q ss_pred chhhHHHHHHHHHHHHhcC------CCccc---cCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCc
Q 001060 237 PIQQLDRYFSSFKEFAASR------PLSEL---RTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGL 307 (1169)
Q Consensus 237 p~~~~~~~~~~~~~~~~~~------~~~~~---~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 307 (1169)
....+..+.....+.... +..+. ...+.+.+....++.. ....+
T Consensus 233 -f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~--------------------------~~~~p 285 (822)
T PRK14574 233 -VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR--------------------------WGKDP 285 (822)
T ss_pred -cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh--------------------------ccCCC
Confidence 111122222222221110 00000 0001111000000000 00011
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001060 308 TEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA 387 (1169)
Q Consensus 308 ~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~ 387 (1169)
.....+.....-+.-.....+++.++|..|+.+-.- ..+--.-+-..+++.+...+.+++|..+|++++...+
T Consensus 286 ~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-------~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 286 EAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-------GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-------CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 111222223333334556778899999999876531 1111122445578888999999999999999988652
Q ss_pred ----CCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHhh--------------ccChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 388 ----NYPEY--WIRYVLCMEASGSMDLAHNALARATHVFV--------------KRLPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 388 ----~~~e~--W~~~a~~l~~~g~~e~A~~vl~rAl~~~~--------------p~~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
...++ ...+.-.+...+++++|..++++..+..+ |+...+..+.+..+.-.|++.+|.++
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22232 34444445678999999999999887432 12346777788888899999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001060 448 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 527 (1169)
Q Consensus 448 ~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kA 527 (1169)
++++ ....|++..+++.+++++...|...+|+.+++.++.+.|.+ ..+....+..... ++++.+|..+..+.
T Consensus 439 le~l-~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~------~~~~~~~~~~al~-l~e~~~A~~~~~~l 510 (822)
T PRK14574 439 LEDL-SSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS------LILERAQAETAMA-LQEWHQMELLTDDV 510 (822)
T ss_pred HHHH-HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 9998 78899999999999999999999999999999999887642 4567777777666 89999999999999
Q ss_pred hhhcCCCHHH
Q 001060 528 LDHVQLSKPL 537 (1169)
Q Consensus 528 l~~~p~s~~l 537 (1169)
++.+|++...
T Consensus 511 ~~~~Pe~~~~ 520 (822)
T PRK14574 511 ISRSPEDIPS 520 (822)
T ss_pred HhhCCCchhH
Confidence 9999999843
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=3.6e-17 Score=184.43 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=104.0
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a 432 (1169)
+.+...|..++.++.+.|+.++|+..|+++|...|.+++++..++.++...|+.++++.++.+..... +.++.+|..+|
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la 221 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALA 221 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 35577899999999999999999999999999999999999999999999999999999998888876 78899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~ 489 (1169)
..+...|+.++|+..|+++ .+.+|+++.++..+++++...|+.++|..++++++..
T Consensus 222 ~~~~~lg~~~~Al~~~~~~-~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKA-LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHH-HHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHhcccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999998 7889999999999999999999999999999998865
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.2e-14 Score=157.49 Aligned_cols=324 Identities=15% Similarity=0.148 Sum_probs=236.0
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHh
Q 001060 78 VPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA---------------------------QDNIVKIRRVYDAFLAE 130 (1169)
Q Consensus 78 ~~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~---------------------------~~~i~~Ar~~ye~~l~~ 130 (1169)
.+..+.+++-|..+|..-|.+..+|..|.+++.... -...++++.-++..+..
T Consensus 177 ~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~ 256 (559)
T KOG1155|consen 177 LGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSV 256 (559)
T ss_pred hchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346778999999999999999999999988775421 01334455555666666
Q ss_pred -CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCC-HH
Q 001060 131 -FPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLS-FP 208 (1169)
Q Consensus 131 -~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s-~~ 208 (1169)
||.+.-+-...|.....+.++++|+.+|+..++..|+..+-.-.|.+.+. ..++..+.--+-+.........+.. ..
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY-v~~~~skLs~LA~~v~~idKyR~ETCCi 335 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY-VKNDKSKLSYLAQNVSNIDKYRPETCCI 335 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH-HHhhhHHHHHHHHHHHHhccCCccceee
Confidence 67665555555556666677777777777777777776665555655554 2222222212222222211122221 22
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccc
Q 001060 209 LWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANE 288 (1169)
Q Consensus 209 lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~ 288 (1169)
|..-|. ..++.++|...|+|+|++.+.-+..+
T Consensus 336 IaNYYS----lr~eHEKAv~YFkRALkLNp~~~~aW-------------------------------------------- 367 (559)
T KOG1155|consen 336 IANYYS----LRSEHEKAVMYFKRALKLNPKYLSAW-------------------------------------------- 367 (559)
T ss_pred ehhHHH----HHHhHHHHHHHHHHHHhcCcchhHHH--------------------------------------------
Confidence 322222 25677888888888887754422111
Q ss_pred cccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHH
Q 001060 289 EEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER 368 (1169)
Q Consensus 289 ~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~ 368 (1169)
...+.-|.+.+.-..||..|++||+ ++|.+..+|..+++.++-
T Consensus 368 -----------------------------TLmGHEyvEmKNt~AAi~sYRrAvd--------i~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 368 -----------------------------TLMGHEYVEMKNTHAAIESYRRAVD--------INPRDYRAWYGLGQAYEI 410 (559)
T ss_pred -----------------------------HHhhHHHHHhcccHHHHHHHHHHHh--------cCchhHHHHhhhhHHHHH
Confidence 1123346666777889999999999 899999999999999999
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 369 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 448 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 448 (1169)
.+-+.=++..|++++.+-|++..+|..++.++++.++.++|+++|.||+... .....++..+|+++++.++.++|...|
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999865 556789999999999999999999999
Q ss_pred HHHhhh-------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001060 449 QLVHTE-------TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 489 (1169)
Q Consensus 449 ~~a~~~-------~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~ 489 (1169)
++- ++ ..|+...+...++..+.+.+++++|.....+++..
T Consensus 490 ek~-v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 490 EKY-VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHH-HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 986 33 56667777777999999999999988776666554
No 47
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.70 E-value=2.2e-15 Score=183.85 Aligned_cols=217 Identities=18% Similarity=0.286 Sum_probs=168.0
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001060 155 VEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL--SFPLWDKYIEYEYMQQEWSRVAMIYTR 232 (1169)
Q Consensus 155 ~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~--s~~lw~~y~~~e~~~~~~~~a~~iY~r 232 (1169)
.+=|+|.|..+|++.-+|+.|..|.+ ..++.++||++++|||..+...-. -..||..|+++|...|.-+.+.++|.|
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34588899999999999999999999 789999999999999987743322 357899999988888766667777777
Q ss_pred HHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHH
Q 001060 233 ILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 312 (1169)
Q Consensus 233 ~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 312 (1169)
+.+.- +.
T Consensus 1523 Acqyc--------d~----------------------------------------------------------------- 1529 (1710)
T KOG1070|consen 1523 ACQYC--------DA----------------------------------------------------------------- 1529 (1710)
T ss_pred HHHhc--------ch-----------------------------------------------------------------
Confidence 64320 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH
Q 001060 313 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY 392 (1169)
Q Consensus 313 ~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~ 392 (1169)
+..+..++.+|++.+.++.|..+|++.++.+.....+
T Consensus 1530 -------------------------------------------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~v 1566 (1710)
T KOG1070|consen 1530 -------------------------------------------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKV 1566 (1710)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhH
Confidence 1123344455566666677777777777777777888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhcc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~--~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
|++|+.+|.++++-+.|+.++.||++.. |+ +..+.-..|+++.++|+-+.+|.+|+-. +..+|.-.++|+-|++++
T Consensus 1567 W~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl-l~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1567 WIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYGDAERGRTLFEGL-LSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcCCchhhHHHHHHH-HhhCccchhHHHHHHHHH
Confidence 8888888888888888888888888866 54 5666667888888888888888888886 556888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhh
Q 001060 471 RRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~ 490 (1169)
.++|+.+.+|.+|+|+|.+.
T Consensus 1645 ik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1645 IKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HccCCHHHHHHHHHHHHhcC
Confidence 88888888888888888865
No 48
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.70 E-value=1e-12 Score=169.47 Aligned_cols=408 Identities=10% Similarity=0.066 Sum_probs=288.9
Q ss_pred CCCchHHHHHHHHHHhCCC--CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSS--DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE 156 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~--d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~ 156 (1169)
+.+..+++.|+...+.+.. +.-.+..++..+.+ .+.+..|..+|+.+.. | +...|..++..+.+.++++.|.+
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~--~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK--QRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--CCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHH
Confidence 3456677777777776643 33344456676666 3589999999988865 6 46789999999999999999999
Q ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001060 157 VYERAVQGV-TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 235 (1169)
Q Consensus 157 l~eraL~~~-P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~ 235 (1169)
+|+++++.- ..+...|..++..+. ..|+.+.|+++|+++.. .|..+ +...|...|..+.+.|++++|..+|.++..
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~-k~G~vd~A~~vf~eM~~-~Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCA-KSGKVDAMFEVFHEMVN-AGVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH-hCcCHHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999998753 347788888888888 78999999999999987 34332 457899999999999999999999999987
Q ss_pred cchh-hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 236 NPIQ-QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 236 ~p~~-~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
.... +...+......+.... ..+++..+...+... ..+ .. .+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G------~~deA~~lf~eM~~~---~~g--------i~---------------PD~v--- 580 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSG------AVDRAFDVLAEMKAE---THP--------ID---------------PDHI--- 580 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHh---cCC--------CC---------------CcHH---
Confidence 5211 1122222222222221 113332211111000 000 00 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cCCHHHH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-ANYPEYW 393 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-~~~~e~W 393 (1169)
....+...|-+.+++++|++.|+++.++ . -+.+...|..++..+.+.|++++|+.+|++..... .-+...|
T Consensus 581 -TynaLI~ay~k~G~ldeA~elf~~M~e~---g----i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 581 -TVGALMKACANAGQVDRAKEVYQMIHEY---N----IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHc---C----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 2233445688889999999999998873 1 13456789999999899999999999999988662 3346688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHHHHHHHH
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~a~~e~r 472 (1169)
..++..+.+.|++++|..+|++..+...+-+..+|..+...+.+.|++++|+.+|++... .+.| +...|..++..+.+
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k 731 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Confidence 888888888999999999999988765555778888889999999999999999998621 2345 45679999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc-CCCHHHHHHHHHh
Q 001060 473 LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV-QLSKPLLEALIHF 544 (1169)
Q Consensus 473 ~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~-p~s~~l~~~~a~~ 544 (1169)
.|++++|..+|++.....- .++ ...|..++..+.+ .|++++|+++|..+++.. ..+...+..++.+
T Consensus 732 ~G~~eeAlelf~eM~~~Gi----~Pd-~~Ty~sLL~a~~k-~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGL----CPN-TITYSILLVASER-KDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCC----CCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999998876431 122 3456666666555 889999999999998853 2234445444433
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.69 E-value=4.7e-16 Score=154.78 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=76.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+++|||+|||+++|+++|+++|++||.|+++.| +.++.+++++|||||+|++.++|++||+. +++.|+|+.|+|+++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKV-IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4579999999999999999999999999999875 56778999999999999999999999975 899999999999998
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87543
No 50
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=3.2e-13 Score=160.84 Aligned_cols=340 Identities=13% Similarity=0.124 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 100 ~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
......+..+-. .|++++|.+++..++.++|.++..|.-++.++..+|+.+++...+--+--+.|.+.++|+.++.+.
T Consensus 140 ~~ll~eAN~lfa--rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFA--RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 334444444444 479999999999999999999999999999999999999999999888888899999999999998
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhcCCCc
Q 001060 180 INTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-PIQQLDRYFSSFKEFAASRPLS 258 (1169)
Q Consensus 180 ~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-p~~~~~~~~~~~~~~~~~~~~~ 258 (1169)
. ..|+++.|+-+|.|||+..|.+ ..+...+..+..+.|...+|...|.+++.. |+.+++.+-..
T Consensus 218 ~-~~~~i~qA~~cy~rAI~~~p~n---~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~----------- 282 (895)
T KOG2076|consen 218 E-QLGNINQARYCYSRAIQANPSN---WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL----------- 282 (895)
T ss_pred H-hcccHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH-----------
Confidence 8 8999999999999999976664 566667777888889999999999999987 53322222111
Q ss_pred cccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 259 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 338 (1169)
Q Consensus 259 ~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e 338 (1169)
+-.....|...++-+.|+..++
T Consensus 283 ----------------------------------------------------------i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 283 ----------------------------------------------------------IRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred ----------------------------------------------------------HHHHHHHHHHhhHHHHHHHHHH
Confidence 0011123444444466666677
Q ss_pred HhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------------hcc----CCHHH
Q 001060 339 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI----------------------ACA----NYPEY 392 (1169)
Q Consensus 339 ~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~----------------------~~~----~~~e~ 392 (1169)
.++.. -.+....+...-|+..+.+...++++......--. .|+ ...++
T Consensus 305 ~~~s~------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 305 GALSK------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHhh------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 66651 11222233344455555555555554333222111 111 11122
Q ss_pred H-HHHHHHHHHcCChHHHHHHHHHHHHHh--hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-ChHHHHHHHHH
Q 001060 393 W-IRYVLCMEASGSMDLAHNALARATHVF--VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP-GLLEAIIKHAN 468 (1169)
Q Consensus 393 W-~~~a~~l~~~g~~e~A~~vl~rAl~~~--~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P-~~~~~~~~~a~ 468 (1169)
- ++...++...+..+....++...+... +.+.+.+++..++.+...|++.+|+.+|..+ ....+ .+..+|++++.
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i-~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI-TNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH-hcCccccchhhhHHHHH
Confidence 2 255555555444443333333333322 3467889999999999999999999999997 33222 34669999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001060 469 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 528 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl 528 (1169)
++..+|.+++|...|+++|...|.+ -.+.+.++.++.+ .|+.++|.++++...
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~------~D~Ri~Lasl~~~-~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDN------LDARITLASLYQQ-LGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCc------hhhhhhHHHHHHh-cCCHHHHHHHHhccc
Confidence 9999999999999999999998754 3467788888776 999999999988765
No 51
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.68 E-value=2.4e-13 Score=172.97 Aligned_cols=433 Identities=11% Similarity=0.071 Sum_probs=320.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc-CCCHHHHHHH
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEF--PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV-TYSVDIWLHY 175 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~--P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~-P~s~~lw~~y 175 (1169)
...|..++..+.. .++..+|..+|+.+.... ..+...|..++..+.+.++++.+..++..+++.- ..++.++..+
T Consensus 87 ~~~~~~~i~~l~~--~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 87 GVSLCSQIEKLVA--CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred ceeHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3478888887776 469999999999998754 3456778999999999999999999999887642 3467888888
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhc
Q 001060 176 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ-QLDRYFSSFKEFAAS 254 (1169)
Q Consensus 176 ~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~-~~~~~~~~~~~~~~~ 254 (1169)
+..+. ..|+.+.|+++|++..+ . +...|...+.-+...|++++|..+|+++++.... +...+-.....+...
T Consensus 165 i~~y~-k~g~~~~A~~lf~~m~~---~---~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 165 LLMHV-KCGMLIDARRLFDEMPE---R---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHh-cCCCHHHHHHHHhcCCC---C---CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 88887 78999999999998754 2 3456888888888899999999999999875221 111111111111111
Q ss_pred CCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 255 RPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI 334 (1169)
Q Consensus 255 ~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai 334 (1169)
.. .+.+.++...+. +.. . .+ +. .+...+...|.+.+++++|+
T Consensus 238 ~~------~~~~~~l~~~~~----~~g-----~----~~-------d~------------~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 238 GS------ARAGQQLHCCVL----KTG-----V----VG-------DT------------FVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred Cc------HHHHHHHHHHHH----HhC-----C----Cc-------cc------------eeHHHHHHHHHHCCCHHHHH
Confidence 10 011111000000 000 0 00 00 02344567889999999999
Q ss_pred HHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001060 335 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASGSMDLAHNAL 413 (1169)
Q Consensus 335 ~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~-~~~~~e~W~~~a~~l~~~g~~e~A~~vl 413 (1169)
..|++... .+...|..++..+.+.|+.++|+.+|++.... ..-+...+..++..+.+.|++++|..++
T Consensus 280 ~vf~~m~~-----------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 280 CVFDGMPE-----------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred HHHHhCCC-----------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 99987643 34678999999999999999999999998765 3445678888888889999999999999
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 414 ARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 414 ~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
..+++...+.+..++..+...+.+.|++++|+.+|++. . .| +...|..++..+.+.|+.++|..+|++.+....
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m-~--~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~-- 422 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-P--RK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGV-- 422 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-C--CC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Confidence 99998766667788999999999999999999999986 3 23 567899999999999999999999999887542
Q ss_pred CccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC--CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001060 494 EHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL--SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 571 (1169)
Q Consensus 494 ~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~--s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~ 571 (1169)
.|+ ...|..++..+.+ .|.+++|+++|+...+..+. +...|..++.+....|. ++.+.++|+++.. .|+
T Consensus 423 --~Pd-~~T~~~ll~a~~~-~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~---~~eA~~~~~~~~~-~p~- 493 (697)
T PLN03081 423 --APN-HVTFLAVLSACRY-SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL---LDEAYAMIRRAPF-KPT- 493 (697)
T ss_pred --CCC-HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC---HHHHHHHHHHCCC-CCC-
Confidence 122 3456666666666 99999999999999874322 33456667777777776 6667777776421 111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 572 PSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 572 ~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
..+|...+.-...+|+.+..+++.++..++.+.
T Consensus 494 ---------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 494 ---------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred ---------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 247999999999999999999999988777664
No 52
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.68 E-value=3.1e-13 Score=171.97 Aligned_cols=446 Identities=11% Similarity=0.030 Sum_probs=327.8
Q ss_pred CCCchHHHHHHHHHHhCC--CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHH
Q 001060 79 PAMSGEEDRLWNIVKANS--SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAE--FPLCYGYWKKYADHEARVGSMDKV 154 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP--~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~--~P~~~~~W~~~a~~e~~~~~~e~A 154 (1169)
+.+..+++.|+.+....+ -|...|..|+..+... +++..++.++..++.. .| +...|..++..+.+.|++++|
T Consensus 101 g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHH
Confidence 345677888887776543 4778899999988875 5899999999998863 45 578899999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001060 155 VEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234 (1169)
Q Consensus 155 ~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L 234 (1169)
+++|+++.. .++..|...+..+. ..|++++|.++|++++. .|..+. ...+...+......+....+..++..++
T Consensus 178 ~~lf~~m~~---~~~~t~n~li~~~~-~~g~~~~A~~lf~~M~~-~g~~p~-~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 178 RRLFDEMPE---RNLASWGTIIGGLV-DAGNYREAFALFREMWE-DGSDAE-PRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHHHhcCCC---CCeeeHHHHHHHHH-HCcCHHHHHHHHHHHHH-hCCCCC-hhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999865 36778888888877 78999999999999987 444432 2345555555555678888888888877
Q ss_pred hcchhh----HHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchH
Q 001060 235 ENPIQQ----LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEA 310 (1169)
Q Consensus 235 ~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 310 (1169)
+..... +..+...|.+ .. ..++|.. ++..+.+. +.
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k---~g------~~~~A~~----vf~~m~~~----------------------------~~ 290 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSK---CG------DIEDARC----VFDGMPEK----------------------------TT 290 (697)
T ss_pred HhCCCccceeHHHHHHHHHH---CC------CHHHHHH----HHHhCCCC----------------------------Ch
Confidence 752211 1122222221 11 1133321 12111100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cCC
Q 001060 311 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-ANY 389 (1169)
Q Consensus 311 ~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-~~~ 389 (1169)
. ....+...|.+.++.++|+..|++..+. .+ ..+...+..++..+.+.|+++++..+++.++... +.+
T Consensus 291 v----t~n~li~~y~~~g~~~eA~~lf~~M~~~---g~----~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 291 V----AWNSMLAGYALHGYSEEALCLYYEMRDS---GV----SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred h----HHHHHHHHHHhCCCHHHHHHHHHHHHHc---CC----CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 1 2233456788899999999999988652 11 1234578888888889999999999999999874 667
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKHAN 468 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~a~ 468 (1169)
..++..++..|.+.|++++|..+|++..+ .+...|..+...+.++|+.++|.++|++... .+.|+ ...+..++.
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~ 434 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLS 434 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHH
Confidence 78999999999999999999999988653 4667899999999999999999999999632 24564 456778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhC
Q 001060 469 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 548 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~ 548 (1169)
.+.+.|..++|..+|+...+...-. ++ ...|..+++.+.+ .|++++|.+++++.- ..| +...|..++.--..+
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~---p~-~~~y~~li~~l~r-~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIK---PR-AMHYACMIELLGR-EGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIH 507 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCC---CC-ccchHhHHHHHHh-cCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHc
Confidence 8889999999999999998643211 11 2357778888777 999999999998753 333 456788777777666
Q ss_pred CChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 001060 549 SSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHAR 609 (1169)
Q Consensus 549 ~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~ 609 (1169)
++ ++.++.++++.+...|++.. .+...++.....|..+.+.++.+++.+
T Consensus 508 g~---~~~a~~~~~~l~~~~p~~~~---------~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 508 KN---LELGRLAAEKLYGMGPEKLN---------NYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CC---cHHHHHHHHHHhCCCCCCCc---------chHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66 67788889998887776542 466777788888999999888877643
No 53
>PLN03077 Protein ECB2; Provisional
Probab=99.67 E-value=1.6e-13 Score=178.67 Aligned_cols=444 Identities=9% Similarity=0.024 Sum_probs=312.1
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAE--FPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~--~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
++.+...|+.... .|.-.|..|+..+-+. |+.++|..+|++++.. .|+. -.+..++..+.+.++.+.+++++
T Consensus 238 ~~~A~~lf~~m~~---~d~~s~n~li~~~~~~--g~~~eAl~lf~~M~~~g~~Pd~-~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 238 VVSARLVFDRMPR---RDCISWNAMISGYFEN--GECLEGLELFFTMRELSVDPDL-MTITSVISACELLGDERLGREMH 311 (857)
T ss_pred HHHHHHHHhcCCC---CCcchhHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChHHHHHHH
Confidence 3344444444322 2445666666666653 4666677777666553 4443 33455556666666777777766
Q ss_pred HHHHhcc-CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-
Q 001060 159 ERAVQGV-TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN- 236 (1169)
Q Consensus 159 eraL~~~-P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~- 236 (1169)
..+++.- ..+..+|..++..+. ..|+.++|+++|++... . +...|...+.-+.+.|++++|..+|+++...
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~vf~~m~~---~---d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYL-SLGSWGEAEKVFSRMET---K---DAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHH-hcCCHHHHHHHHhhCCC---C---CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 6665532 346788888888888 78999999999998653 2 3356888998888899999999999998765
Q ss_pred --chh-hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHH
Q 001060 237 --PIQ-QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL 313 (1169)
Q Consensus 237 --p~~-~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 313 (1169)
|.. .+..+...+. ... ..+++.++ +....+... . .+
T Consensus 385 ~~Pd~~t~~~ll~a~~---~~g------~~~~a~~l----~~~~~~~g~-----~-------------------~~---- 423 (857)
T PLN03077 385 VSPDEITIASVLSACA---CLG------DLDVGVKL----HELAERKGL-----I-------------------SY---- 423 (857)
T ss_pred CCCCceeHHHHHHHHh---ccc------hHHHHHHH----HHHHHHhCC-----C-------------------cc----
Confidence 222 1222222221 111 11222111 110000000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHH
Q 001060 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYW 393 (1169)
Q Consensus 314 ~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W 393 (1169)
......+...|.+.+++++|+..|++..+ .+...|..++..+.+.|+.++|+.+|++.+....-+...+
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~ 492 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE-----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTL 492 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHH
Confidence 01334456788999999999999998644 2356799999999999999999999999987766677778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
..+...+.+.|+++.+..++..+++.-...+..++..+...+.+.|++++|+.+|+.. +.+...|..++..+.+.
T Consensus 493 ~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~ 567 (857)
T PLN03077 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAH 567 (857)
T ss_pred HHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHc
Confidence 8888888889999999999999888665556677778888999999999999999874 44678899999999999
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC--CHHHHHHHHHhHhhCCCh
Q 001060 474 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL--SKPLLEALIHFESIQSSP 551 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~--s~~l~~~~a~~E~~~~~~ 551 (1169)
|+.++|..+|++.++.... |+ ...|..+...+.+ .|.+++|+++|+...+..+. +...|..++.+....|.
T Consensus 568 G~~~~A~~lf~~M~~~g~~----Pd-~~T~~~ll~a~~~-~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~- 640 (857)
T PLN03077 568 GKGSMAVELFNRMVESGVN----PD-EVTFISLLCACSR-SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK- 640 (857)
T ss_pred CCHHHHHHHHHHHHHcCCC----CC-cccHHHHHHHHhh-cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC-
Confidence 9999999999998875321 22 1235555555455 89999999999999854332 34566677777777776
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 552 KQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 552 ~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
++.+..++++.- ..|+ ..+|..++.-...+|+++..+.+.++..++.|..
T Consensus 641 --~~eA~~~~~~m~-~~pd----------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 641 --LTEAYNFINKMP-ITPD----------PAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred --HHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 666788888752 1222 2589999999999999999999999999887763
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=7.8e-17 Score=155.93 Aligned_cols=130 Identities=34% Similarity=0.477 Sum_probs=96.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++.+.+|+++|.+||.|..|++ +++. ...+||||+|+++.+|+.||.. +|..++|.+|+||+.+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieL--K~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIEL--KNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEe--ccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 489999999999999999999999999999664 3332 2568999999999999999988 8999999999999998
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC--------C-CCCCCCCCCCCCCCCCCCCCCCC
Q 001060 1112 PNTGSTSRGG-RRGRGRGSYQTDAPRGRFGGR--------G-LGRGSAQDGGDYNRSRGNGFYQR 1166 (1169)
Q Consensus 1112 ~~~~~~~rg~-~~g~grg~~~~~~~~g~~ggr--------g-~grg~~~~~g~~~r~~g~g~~~~ 1166 (1169)
.-+.++.++| .+|+||||.++++.+|.-.-| | ...++|++.+++||..|..+|..
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfad 146 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFAD 146 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeee
Confidence 7654443333 333444432222111111011 2 24678999999999999998853
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=2.4e-16 Score=177.77 Aligned_cols=270 Identities=18% Similarity=0.221 Sum_probs=114.4
Q ss_pred HhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH
Q 001060 93 KANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEF--PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD 170 (1169)
Q Consensus 93 ~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~--P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~ 170 (1169)
+..|. +....++.++-. .|++++|.+++++.+... |++..||..++++....++++.|+..|++++...+.++.
T Consensus 4 ~~~~~--~~~l~~A~~~~~--~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~ 79 (280)
T PF13429_consen 4 EFGPS--EEALRLARLLYQ--RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc--cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34455 445577777776 469999999997776554 899999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 001060 171 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKE 250 (1169)
Q Consensus 171 lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~ 250 (1169)
....++.+ . ..+++++|..+++++.+..+ +..+|..++......++++++..++.++...+...
T Consensus 80 ~~~~l~~l-~-~~~~~~~A~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---------- 143 (280)
T PF13429_consen 80 DYERLIQL-L-QDGDPEEALKLAEKAYERDG----DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP---------- 143 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------------
T ss_pred cccccccc-c-cccccccccccccccccccc----ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC----------
Confidence 88888888 4 67899999999998887432 45678888888888899999988887765322100
Q ss_pred HHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 001060 251 FAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEF 330 (1169)
Q Consensus 251 ~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~ 330 (1169)
.-..++..+..+|.+.++.
T Consensus 144 -------------------------------------------------------------~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 144 -------------------------------------------------------------DSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -------------------------------------------------------------T-HHHHHHHHHHHHHCCHH
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHcCCH
Confidence 0001444556778889999
Q ss_pred HHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHH
Q 001060 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAH 410 (1169)
Q Consensus 331 ~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~ 410 (1169)
++|+..|+++|+ ++|.+..++..++.++...|+.++++.++++.....+.++.+|..++..+...|+.++|+
T Consensus 163 ~~A~~~~~~al~--------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 163 DKALRDYRKALE--------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HHHHHHHHHHHH--------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred HHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc
Confidence 999999999999 788889999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 411 NALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 411 ~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
..|++++... |+++.++..+|.++...|+.++|..++.+++
T Consensus 235 ~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 235 EYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cccccccccc-ccccccccccccccccccccccccccccccc
Confidence 9999999977 8999999999999999999999999999874
No 56
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.66 E-value=5.7e-16 Score=173.31 Aligned_cols=160 Identities=19% Similarity=0.250 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHH
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 540 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~ 540 (1169)
-+|+.|+.+.+|.+.++.||.+|++|+... .....+|+.+|.+++...++.+.|++||+++++.+|.+..+|..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 379999999999999999999999998543 23367999999999996778888999999999999999999999
Q ss_pred HHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHH-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchh
Q 001060 541 LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAE-REELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSE 619 (1169)
Q Consensus 541 ~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~-~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~~~~~~ 619 (1169)
|+.|+..+++ ++.+|.+|||++... +.+. ...||.+|++||..|||++++.+|++|+.+++++..
T Consensus 76 Y~~~l~~~~d---~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~---- 141 (280)
T PF05843_consen 76 YLDFLIKLND---INNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN---- 141 (280)
T ss_dssp HHHHHHHTT----HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-----
T ss_pred HHHHHHHhCc---HHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh----
Confidence 9999999887 678999999999863 3344 788999999999999999999999999999998631
Q ss_pred hhhcchhhhhcchHHHhhhcCCCCCCC
Q 001060 620 LRKRHAEDFLASERAKMAKSYSGAPSP 646 (1169)
Q Consensus 620 ~~kr~~~~~~~~~~~k~~~~~~~~~~~ 646 (1169)
.....++||++.+++||+...
T Consensus 142 ------~~~~f~~ry~~~~~~~~~~~~ 162 (280)
T PF05843_consen 142 ------SLELFSDRYSFLDLNPISPRE 162 (280)
T ss_dssp ------HHHHHHCCT-BTTB-CCHHCC
T ss_pred ------HHHHHHHHhhccccCcccHHh
Confidence 233467899999999998653
No 57
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.64 E-value=2.9e-12 Score=143.79 Aligned_cols=437 Identities=15% Similarity=0.123 Sum_probs=239.7
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-MDKVVEVYERA 161 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-~e~A~~l~era 161 (1169)
.-...++.++...+.|...|..++.++.+. +.+.+..++|.++|..+|+++++|+.-|.++...+. ++.|+.+|.|+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~--~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKK--KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 446778899999999999999999999985 369999999999999999999999999999997764 99999999999
Q ss_pred HhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH-----------HHHHHhcCCCCCCHHHHHHHHHHHHH--h-hhHHHHH
Q 001060 162 VQGVTYSVDIWLHYCIFAINTYGDPETIRRLF-----------ERGLAYVGTDYLSFPLWDKYIEYEYM--Q-QEWSRVA 227 (1169)
Q Consensus 162 L~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~-----------erAl~~~g~d~~s~~lw~~y~~~e~~--~-~~~~~a~ 227 (1169)
|+.+|++++||++|.++++........-++.+ +++....-.-..+... ..+...+.. . ...+.+-
T Consensus 167 LR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~-~~~~~k~~e~~~~~~~d~~k 245 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDI-IKGAVKSVELSVAEKFDFLK 245 (568)
T ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhh-hhcchhhcchHHHHHHHHHH
Confidence 99999999999999999884322221111111 1111100000000000 000000000 0 0011111
Q ss_pred HHHHHHH----h----cchhh--H-HHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccc
Q 001060 228 MIYTRIL----E----NPIQQ--L-DRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 296 (1169)
Q Consensus 228 ~iY~r~L----~----~p~~~--~-~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 296 (1169)
++=++++ . .|..- + .+.++.+......+..+.- ...+. ...+..- ....+
T Consensus 246 el~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~-~~~~~---------~~k~s~~-~~v~e-------- 306 (568)
T KOG2396|consen 246 ELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQA-KAVEV---------GSKESRC-CAVYE-------- 306 (568)
T ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhh-hchhc---------chhHHHH-HHHHH--------
Confidence 1111111 1 12211 1 1111111111111110000 00000 0000000 00000
Q ss_pred cccCCccccCcchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHH
Q 001060 297 EQTSKPVSAGLTEAEELEKYIAVREEMYKK--AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNK 374 (1169)
Q Consensus 297 e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~--~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~ 374 (1169)
.....+.....|.-||..+.+.+.. .......+..|+.+.. .+.+.+.....+.....+..... .
T Consensus 307 -----e~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~-----~~~l~~~~~~~ys~~~l~~~t~~---~ 373 (568)
T KOG2396|consen 307 -----EAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHE-----LKLLSECLYKQYSVLLLCLNTLN---E 373 (568)
T ss_pred -----HHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----hcccccchHHHHHHHHHHHhccc---h
Confidence 0001112333444566666554432 2233344445565554 12233333333333333333222 2
Q ss_pred HHHHHHHH-HHhccCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC-HHHHH--HHHH
Q 001060 375 VVKLYERC-LIACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD-IDGAR--AAYQ 449 (1169)
Q Consensus 375 a~~lyera-L~~~~~~~e~W~~~a~~l~~~-g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~-~~~A~--~~~~ 449 (1169)
++.+-++. ......+..+|+.+...+... .+++--..-+--.++..+ ....+..|+..- .++ +...+ .++.
T Consensus 374 ~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~--~s~~~~~w~s~~--~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 374 AREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQV--CSELLISWASAS--EGDSLQEDTLDLIIS 449 (568)
T ss_pred HhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh--cchhHHHHHHHh--hccchhHHHHHHHHH
Confidence 22222222 244578889999999887643 232221111111122121 233444444332 222 22222 2333
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHh
Q 001060 450 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV-SRNAEKARQILVDSL 528 (1169)
Q Consensus 450 ~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~-~g~~e~Ar~i~~kAl 528 (1169)
.++.-..++...+-..+..+..+.+.+.+|+.+|.+...+.|- .-.++-+...|+-.. .-++..+|++|+.|+
T Consensus 450 a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~------sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 450 ALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPF------SLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCc------cHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 3334457777778888888999999999999999998888652 234666777666542 225899999999999
Q ss_pred hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 529 DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 529 ~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
..+..+..+|..|..+|..+|.++. +-.+|-||+..
T Consensus 524 ~~fg~d~~lw~~y~~~e~~~g~~en---~~~~~~ra~kt 559 (568)
T KOG2396|consen 524 REFGADSDLWMDYMKEELPLGRPEN---CGQIYWRAMKT 559 (568)
T ss_pred HHhCCChHHHHHHHHhhccCCCccc---ccHHHHHHHHh
Confidence 9999999999999999999998654 56678887664
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.2e-12 Score=142.87 Aligned_cols=368 Identities=12% Similarity=0.013 Sum_probs=284.9
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHhCCHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKK---YADHEARVGSMDKVVEVYE 159 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~---~a~~e~~~~~~e~A~~l~e 159 (1169)
.+.-++...|..-|--.+.-..|+....+. .+....--..+...|.....|+. ++.++.-...+.-+..++-
T Consensus 148 ~~vl~ykevvrecp~aL~~i~~ll~l~v~g-----~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~l 222 (564)
T KOG1174|consen 148 EAVLAYKEVIRECPMALQVIEALLELGVNG-----NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLML 222 (564)
T ss_pred HHHHhhhHHHHhcchHHHHHHHHHHHhhcc-----hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHH
Confidence 556667777777777666666666554431 12233334556667777666642 3333333344566677788
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001060 160 RAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 239 (1169)
Q Consensus 160 raL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~ 239 (1169)
.-+...|.|++|....++++. ..|+.+++.-.|+++.. .|+....-.+.|..++-..|+.++.-.+-.+++.+...
T Consensus 223 e~~~~lr~NvhLl~~lak~~~-~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ 298 (564)
T KOG1174|consen 223 HDNTTLRCNEHLMMALGKCLY-YNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY 298 (564)
T ss_pred HhhccCCccHHHHHHHhhhhh-hhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc
Confidence 888889999999999999998 89999999999999988 45555566778888777778888776666665544322
Q ss_pred hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH
Q 001060 240 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV 319 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~ 319 (1169)
.-..+|-..
T Consensus 299 ta~~wfV~~----------------------------------------------------------------------- 307 (564)
T KOG1174|consen 299 TASHWFVHA----------------------------------------------------------------------- 307 (564)
T ss_pred chhhhhhhh-----------------------------------------------------------------------
Confidence 222222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 399 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~ 399 (1169)
...-..+++..|+..-+++|. +++.+.+.+...+..+...++.+.|+-.|+.+...-|...+++.-++..
T Consensus 308 --~~l~~~K~~~rAL~~~eK~I~--------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 308 --QLLYDEKKFERALNFVEKCID--------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred --hhhhhhhhHHHHHHHHHHHhc--------cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 112234677778888889998 7888999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccChHHHHHHH-HHH-HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH
Q 001060 400 MEASGSMDLAHNALARATHVFVKRLPEIHLFAA-RFK-EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 477 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a-~~~-e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e 477 (1169)
|...|++.+|.-.-..++..+ +.+....-..+ .+. ..-..-++|.++|++. +.++|++..+....+.+..+.|..+
T Consensus 378 YLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~-L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKS-LKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhh-hccCCccHHHHHHHHHHHHhhCccc
Confidence 999999999998888888877 77776666654 222 2233457899999998 8899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCC
Q 001060 478 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS 550 (1169)
Q Consensus 478 ~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~ 550 (1169)
.+++++++++...++ -.|...+++++.. .+.+.+|...|..||.++|.+..-...+-.+|....+
T Consensus 456 D~i~LLe~~L~~~~D-------~~LH~~Lgd~~~A-~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPD-------VNLHNHLGDIMRA-QNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred hHHHHHHHHHhhccc-------cHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCC
Confidence 999999999998864 2488999999776 8899999999999999999999999999999987654
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=1.9e-12 Score=153.87 Aligned_cols=293 Identities=11% Similarity=-0.007 Sum_probs=194.0
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhcCCHHHHH
Q 001060 112 LAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV-DIWLHYCIFAINTYGDPETIR 190 (1169)
Q Consensus 112 ~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~-~lw~~y~~~~~~~~~~~e~Ar 190 (1169)
..+|+++.|++.+.++....|...-+++..+....+.|++++|.+.|+++++..|.+. .+...++.+.+ ..++++.|+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHH
Confidence 3468999999999999999999888999999999999999999999999999888774 67777888888 789999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHH
Q 001060 191 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAA 270 (1169)
Q Consensus 191 ~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~ 270 (1169)
..+++.++..|. +..++..+.......|+++.+..++.+.++....+- ++..
T Consensus 174 ~~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~----------------------~~~~--- 225 (409)
T TIGR00540 174 HGVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD----------------------EEFA--- 225 (409)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH----------------------HHHH---
Confidence 999999995444 567888888888889999999998888875511100 0000
Q ss_pred HHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCC
Q 001060 271 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP 350 (1169)
Q Consensus 271 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~p 350 (1169)
..+
T Consensus 226 -----------------------------------------------~l~------------------------------ 228 (409)
T TIGR00540 226 -----------------------------------------------DLE------------------------------ 228 (409)
T ss_pred -----------------------------------------------HHH------------------------------
Confidence 000
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA----NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~----~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
...|..+++- +..++....++++....| .++.+++.++..+...|++++|.++++++++.. |++..
T Consensus 229 -----~~a~~~~l~~----~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~ 298 (409)
T TIGR00540 229 -----QKAEIGLLDE----AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRA 298 (409)
T ss_pred -----HHHHHHHHHH----HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCccc
Confidence 0011111100 000111122223333333 466677777776666677777777777777665 44432
Q ss_pred HH--HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhhhCCCccCchH
Q 001060 427 IH--LFAARFKEQNGDIDGARAAYQLVHTETSPGLL--EAIIKHANMERRLGNLEDAFSLYEQ--AIAIEKGKEHSQTLP 500 (1169)
Q Consensus 427 l~--~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~--~~~~~~a~~e~r~g~~e~A~~iy~~--Al~~~~~~~~~~~~~ 500 (1169)
.. ..........++.+.+++.++++ .+..|+++ .+...++.++.+.|++++|+..|++ +++..|+ +
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~-lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-------~ 370 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQ-AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-------A 370 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-------H
Confidence 21 11111122245666677777776 56677777 6677777777777777777777773 4444432 3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001060 501 MLYAQYSRFLHLVSRNAEKARQILVDSLD 529 (1169)
Q Consensus 501 ~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~ 529 (1169)
..+..++.++++ .|+.++|+++|++++.
T Consensus 371 ~~~~~La~ll~~-~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 371 NDLAMAADAFDQ-AGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence 345567777666 7777777777777765
No 60
>PLN03077 Protein ECB2; Provisional
Probab=99.62 E-value=3.2e-12 Score=166.60 Aligned_cols=392 Identities=12% Similarity=0.065 Sum_probs=242.3
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc--CCCHHHHHHH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV--TYSVDIWLHY 175 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~--P~s~~lw~~y 175 (1169)
|...|..|+..+-+. |++++|+++|+++.. | +...|..++..+.+.|++++|.++|+++.... |+. ..+...
T Consensus 322 d~~~~n~Li~~y~k~--g~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~l 395 (857)
T PLN03077 322 DVSVCNSLIQMYLSL--GSWGEAEKVFSRMET--K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASV 395 (857)
T ss_pred chHHHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHH
Confidence 455555555555553 366666666665532 2 23446666666666666666666666554322 322 222222
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC
Q 001060 176 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR 255 (1169)
Q Consensus 176 ~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~ 255 (1169)
+.... ..|+.+.++++++.+++ .|... ...+|...+..+.+.|+++.|+++|+++.+........+...| ....
T Consensus 396 l~a~~-~~g~~~~a~~l~~~~~~-~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~---~~~g 469 (857)
T PLN03077 396 LSACA-CLGDLDVGVKLHELAER-KGLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL---RLNN 469 (857)
T ss_pred HHHHh-ccchHHHHHHHHHHHHH-hCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH---HHCC
Confidence 23222 45556666666666655 22211 2345566666666666677777776665432211111111111 1111
Q ss_pred CCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 256 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKII 335 (1169)
Q Consensus 256 ~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~ 335 (1169)
..+++..+...+.. ...| +.. .+......+...+..+.+.+
T Consensus 470 ------~~~eA~~lf~~m~~--------------~~~p---------------d~~----t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 470 ------RCFEALIFFRQMLL--------------TLKP---------------NSV----TLIAALSACARIGALMCGKE 510 (857)
T ss_pred ------CHHHHHHHHHHHHh--------------CCCC---------------CHh----HHHHHHHHHhhhchHHHhHH
Confidence 11222221111100 0000 001 11111233455566677777
Q ss_pred HHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001060 336 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 415 (1169)
Q Consensus 336 ~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~r 415 (1169)
.+..+++.- -..+......+++.+.+.|++++|..+|+++ ..+...|..++..+.+.|+.++|..+|++
T Consensus 511 i~~~~~~~g-------~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 511 IHAHVLRTG-------IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred HHHHHHHhC-------CCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777776631 1122345667889999999999999999986 56788999999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 416 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH--TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 416 Al~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~--~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
..+.-..-+...+..+...+.+.|.+++|+.+|+... ..+.| +...|..+++++.|.|++++|..++++. ...|
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-- 655 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-- 655 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC--
Confidence 8764323344455555666788999999999999873 12345 4578999999999999999999999875 2222
Q ss_pred CccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHH
Q 001060 494 EHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLV 561 (1169)
Q Consensus 494 ~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~ 561 (1169)
+ +.+|..+..... ..|+.+.|..+.++++++.|++...+..+..+....|..+++..+|+..
T Consensus 656 ----d-~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 656 ----D-PAVWGALLNACR-IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred ----C-HHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1 557877777654 4899999999999999999999988888887777778766665666554
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=1e-12 Score=162.08 Aligned_cols=264 Identities=13% Similarity=0.068 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHH---------HcCChHHHHHHH
Q 001060 310 AEELEKYIAVREEMYKK-AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE---------RDGDFNKVVKLY 379 (1169)
Q Consensus 310 ~~~~~k~i~~~~~~y~~-~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~---------~~gd~~~a~~ly 379 (1169)
.+.+..|+..+..++.. ...+++|+..|+++|. ++|.....|..++.++. ..+++++|+..+
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 34444455444444432 3467899999999999 88988888888776543 224578999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh
Q 001060 380 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL 459 (1169)
Q Consensus 380 eraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~ 459 (1169)
++++..+|.++++|..++.++...|++++|..+|++|+++. |+++.+|+.++.++...|++++|+..|+++ ++++|.+
T Consensus 328 ~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A-l~l~P~~ 405 (553)
T PRK12370 328 IKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC-LKLDPTR 405 (553)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCC
Confidence 99999999999999999999999999999999999999988 899999999999999999999999999998 8999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHH
Q 001060 460 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 539 (1169)
Q Consensus 460 ~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~ 539 (1169)
...++.++.+....|++++|+.++++++...+ +..+..+..++.++.. .|++++|+..+++.+...|.+...+.
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-----p~~~~~~~~la~~l~~-~G~~~eA~~~~~~~~~~~~~~~~~~~ 479 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHL-----QDNPILLSMQVMFLSL-KGKHELARKLTKEISTQEITGLIAVN 479 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-----ccCHHHHHHHHHHHHh-CCCHHHHHHHHHHhhhccchhHHHHH
Confidence 87766666667778999999999999998753 2336677778878766 99999999999999988888877776
Q ss_pred HHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001060 540 ALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 603 (1169)
Q Consensus 540 ~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v 603 (1169)
.++......++ .....++.+++..... +.+. -| .-.|+-.+||.+....+
T Consensus 480 ~l~~~~~~~g~-~a~~~l~~ll~~~~~~-~~~~----------~~--~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 480 LLYAEYCQNSE-RALPTIREFLESEQRI-DNNP----------GL--LPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHHHhccHH-HHHHHHHHHHHHhhHh-hcCc----------hH--HHHHHHHHhhhHHHHHH
Confidence 66655555542 2223344444433221 2111 11 44566667776665555
No 62
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.58 E-value=2.5e-12 Score=141.48 Aligned_cols=413 Identities=16% Similarity=0.213 Sum_probs=269.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-------- 150 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-------- 150 (1169)
+.+++..+.+++...-.|.-..+|...+.-... -+++.....+|-++|..- .+.++|..|.+.-.+.++
T Consensus 56 ~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA--~~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~ 132 (660)
T COG5107 56 ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA--RKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRF 132 (660)
T ss_pred hhHHHHHHHHHHhcCCCccccHHHHHHhcchhh--hhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhh
Confidence 568899999999999999999999977663222 258889999999999865 458999999998887763
Q ss_pred -HHHHHHHHHHHHhccCCCHHHHHHHHHHHHh--------hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 001060 151 -MDKVVEVYERAVQGVTYSVDIWLHYCIFAIN--------TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ 221 (1169)
Q Consensus 151 -~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~--------~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~ 221 (1169)
+-+|-+.--.|.-..|.+..+|-.|+.|+.. ...++|..|+.|.|||. .|.+- -..+|..|-.||.+.+
T Consensus 133 ~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~-tP~~n-leklW~dy~~fE~e~N 210 (660)
T COG5107 133 KIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ-TPMGN-LEKLWKDYENFELELN 210 (660)
T ss_pred hhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc-Ccccc-HHHHHHHHHHHHHHHH
Confidence 2233333334555678999999999999872 12357899999999998 44432 2589999999999876
Q ss_pred hH-------------HHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccc
Q 001060 222 EW-------------SRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANE 288 (1169)
Q Consensus 222 ~~-------------~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~ 288 (1169)
+. ..|+..|+.+... ..............+ ..
T Consensus 211 ~~TarKfvge~sp~ym~ar~~yqe~~nl---------------t~Gl~v~~~~~~Rt~--------nK------------ 255 (660)
T COG5107 211 KITARKFVGETSPIYMSARQRYQEIQNL---------------TRGLSVKNPINLRTA--------NK------------ 255 (660)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHH---------------hccccccCchhhhhh--------cc------------
Confidence 53 3345555444322 000000000000000 00
Q ss_pred cccCCccccccCCccccCcchHHHHHHHHHHHHHHH-H-HHHHHHHHH-HHHHHhhccCCcccCCCChhcHHHHHHHHHH
Q 001060 289 EEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY-K-KAKEFDSKI-IGFETAIRRPYFHVKPLSVTELENWHNYLDF 365 (1169)
Q Consensus 289 ~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y-~-~~~~~~~ai-~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~ 365 (1169)
+ ..+....|..+|.-..+-= . ..+-.++.| -.|+.+|. |+ +-..++|+.|-.+
T Consensus 256 -------~---------~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~--y~------~~~~evw~dys~Y 311 (660)
T COG5107 256 -------A---------ARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILD--YF------YYAEEVWFDYSEY 311 (660)
T ss_pred -------c---------cccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHH--Hh------hhhHHHHHHHHHH
Confidence 0 0000111111111100000 0 000001111 13555554 11 2235899999999
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc--------------c----ChH-
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK--------------R----LPE- 426 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p--------------~----~~~- 426 (1169)
....+|-++|++.-++++..||. +.++|+.+++..++.++...+|+++++.... + .++
T Consensus 312 ~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~El 388 (660)
T COG5107 312 LIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKEL 388 (660)
T ss_pred HhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHH
Confidence 99999999999999999876665 8899999999888888888888887764421 0 111
Q ss_pred ----------HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhCCCc
Q 001060 427 ----------IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEH 495 (1169)
Q Consensus 427 ----------l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~-r~g~~e~A~~iy~~Al~~~~~~~~ 495 (1169)
+|+-+...-.+..-++.||.+|-++ .+..--...+++.-|.+|. ..|+...|-.+|+..+..+++
T Consensus 389 l~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~-rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d--- 464 (660)
T COG5107 389 LLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL-RKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPD--- 464 (660)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH-hccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCC---
Confidence 2333334445666789999999997 3322122334443344432 357889999999999999864
Q ss_pred cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC--HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001060 496 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS--KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 569 (1169)
Q Consensus 496 ~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s--~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~ 569 (1169)
.+.+-..|..|+.. .++-+.||.+|+++++...+. ..+|..|+.+|...|+ +..+-++=+|+....|
T Consensus 465 ---~~~y~~kyl~fLi~-inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~---lN~v~sLe~rf~e~~p 533 (660)
T COG5107 465 ---STLYKEKYLLFLIR-INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGS---LNNVYSLEERFRELVP 533 (660)
T ss_pred ---chHHHHHHHHHHHH-hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcc---hHHHHhHHHHHHHHcC
Confidence 24456788888887 999999999999999977666 7999999999999998 4455556566555443
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.58 E-value=3.6e-13 Score=137.99 Aligned_cols=205 Identities=15% Similarity=0.131 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
.+.+.++.-+...|++..|+.-+++|+++. |++...|..+|.++.+.|+.+.|.+.|+++ +.+.|++.++..+|+.|+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA-lsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKA-LSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHH-HhcCCCccchhhhhhHHH
Confidence 466677777777888888888888888876 888888888888888888888888888888 788888888889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCC
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS 550 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~ 550 (1169)
+.+|.+++|...|++|+.... -+..+..|.+.+.+..+ .|+.+.|+.+|+++|+++|+.+.-...++.++..-++
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~----Y~~~s~t~eN~G~Cal~-~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPA----YGEPSDTLENLGLCALK-AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCC----CCCcchhhhhhHHHHhh-cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 888999999999998887542 12224567777777666 8899999999999999999998888888888887766
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 551 PKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 551 ~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
.--++..+++.....+-+ .+-+..-|+++...||.+.+.+...+...+||..
T Consensus 189 ---y~~Ar~~~~~~~~~~~~~---------A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 189 ---YAPARLYLERYQQRGGAQ---------AESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred ---chHHHHHHHHHHhccccc---------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 344677888887765422 2356677889999999999999999999999974
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=1.3e-12 Score=160.99 Aligned_cols=137 Identities=14% Similarity=0.013 Sum_probs=107.4
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
++|.....|..++..+...|++++|+..|++++..+|.++..++.++..+...|++++|+..+++++...+|+.+..+..
T Consensus 367 l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~ 446 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSM 446 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHH
Confidence 44555556666677677788888999999999999998877665555555567889999999999887766778888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
++.++...|++++|+..+.++ ....|.....+..++..+.+.| +++...+++.++..
T Consensus 447 la~~l~~~G~~~eA~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEI-STQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHh-hhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 999998999999999999886 6668887777877777777776 47888777766654
No 65
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=3.2e-14 Score=148.50 Aligned_cols=94 Identities=23% Similarity=0.433 Sum_probs=82.1
Q ss_pred ccccCCCCCCCCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CC
Q 001060 1019 FEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP 1097 (1169)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~ 1097 (1169)
|.+..++.. .+.+-++|||+-|++++++..|+..|++||+|+.|. +|++..||+++|||||+|++..++..|.+. .|
T Consensus 88 wdP~~dp~a-~gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikrir-lV~d~vTgkskGYAFIeye~erdm~~AYK~adG 165 (335)
T KOG0113|consen 88 WDPNNDPNA-IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIR-LVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG 165 (335)
T ss_pred cCCCCCCcc-cCCccceeeeeeccccccHHHHHHHHHhcCcceeEE-EeeecccCCccceEEEEeccHHHHHHHHHhccC
Confidence 444444333 346789999999999999999999999999999997 488999999999999999999999999987 79
Q ss_pred CeeeceEEEEEeccCCC
Q 001060 1098 IQLAGRQVYIEERRPNT 1114 (1169)
Q Consensus 1098 ~~i~g~~l~V~~~r~~~ 1114 (1169)
+.|+|+.|.|+.-+.+.
T Consensus 166 ~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 166 IKIDGRRILVDVERGRT 182 (335)
T ss_pred ceecCcEEEEEeccccc
Confidence 99999999998877654
No 66
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.56 E-value=2.7e-12 Score=148.36 Aligned_cols=440 Identities=14% Similarity=0.149 Sum_probs=275.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 001060 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQ 163 (1169)
Q Consensus 84 ~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~ 163 (1169)
........+...|.+.+.|..+.... .....|..++.--......+.++.+|...|.
T Consensus 17 ~~~~~n~~~~~~p~~~~~we~~~~~~-----------------------~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ 73 (577)
T KOG1258|consen 17 QFSTDNTSLTKYPDSLDYWEILSNDS-----------------------LDFDAWTTLIQENDSIEDVDALREVYDIFLS 73 (577)
T ss_pred ccCccchhhhhCcchhhHhhccccch-----------------------hcccchHHHHhccCchhHHHHHHHHHHHHHh
Confidence 34445556777788777777655432 2234555444433333456889999999999
Q ss_pred ccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcchhh--
Q 001060 164 GVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ-QEWSRVAMIYTRILENPIQQ-- 240 (1169)
Q Consensus 164 ~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~-~~~~~a~~iY~r~L~~p~~~-- 240 (1169)
.+|.+..+|..|+.++. ..|..+++.++|||+|..++. |..||..|+.|.... ++-+.+++.|.+++..-..+
T Consensus 74 kyPl~~gyW~kfA~~E~-klg~~~~s~~Vfergv~aip~---SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~ 149 (577)
T KOG1258|consen 74 KYPLCYGYWKKFADYEY-KLGNAENSVKVFERGVQAIPL---SVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFL 149 (577)
T ss_pred hCccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchh
Confidence 99999999999999999 899999999999999998875 999999999998875 55666999999999973332
Q ss_pred HHHHHHHHHHHHhcC-CCccccCHHHHHHHHHHHhh----CCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001060 241 LDRYFSSFKEFAASR-PLSELRTAEEVDAAAVAVAA----APSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315 (1169)
Q Consensus 241 ~~~~~~~~~~~~~~~-~~~~~~~~eea~~~~~~~~~----~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k 315 (1169)
-..+|..|.+|++.. ....+ ..+.+.++. .+...+....... ...+. ...... ..
T Consensus 150 S~~lWdkyie~en~qks~k~v------~~iyeRileiP~~~~~~~f~~f~~~l--------~~~~~---~~l~~~---d~ 209 (577)
T KOG1258|consen 150 SDPLWDKYIEFENGQKSWKRV------ANIYERILEIPLHQLNRHFDRFKQLL--------NQNEE---KILLSI---DE 209 (577)
T ss_pred ccHHHHHHHHHHhccccHHHH------HHHHHHHHhhhhhHhHHHHHHHHHHH--------hcCCh---hhhcCH---HH
Confidence 267888888886432 11111 111111100 0011110000000 00000 000000 00
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHhhccCCcccCCCC--hhcHHHHHHHHHHHHHc----CChHHHHHHHHHHHH
Q 001060 316 YIAVREEMYKK-----AKEFDSKIIGFETAIRRPYFHVKPLS--VTELENWHNYLDFIERD----GDFNKVVKLYERCLI 384 (1169)
Q Consensus 316 ~i~~~~~~y~~-----~~~~~~ai~~~e~al~r~~~~v~pl~--~~~~~~W~~yl~~~~~~----gd~~~a~~lyeraL~ 384 (1169)
++..+..+-.. .++..+....+-+-+. .|.. .....+.+.++...++. -.....+..||..+.
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~------~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ik 283 (577)
T KOG1258|consen 210 LIQLRSDVAERSKITHSQEPLEELEIGVKDST------DPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIK 283 (577)
T ss_pred HHHHhhhHHhhhhcccccChhHHHHHHHhhcc------CccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcc
Confidence 11111111000 0001111111111111 1110 00001112221111110 111122333333332
Q ss_pred h--------ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 001060 385 A--------CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS 456 (1169)
Q Consensus 385 ~--------~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~ 456 (1169)
. .....+-|..|..+.+..|+++.....|+|++-.+ -...++|+.|+++.+..|+.+-|..++.+++.-..
T Consensus 284 rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 284 RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 2 22344799999999999999999999999998766 78899999999999999999999999998866678
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHH---HHHHHHhhhc--
Q 001060 457 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKAR---QILVDSLDHV-- 531 (1169)
Q Consensus 457 P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar---~i~~kAl~~~-- 531 (1169)
|..+.+.+.++.|+...|+++.|+.+|++.....|+ +-.+-..++.++++ .|+.+.+. .++.......
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg------~v~~~l~~~~~e~r-~~~~~~~~~~~~l~s~~~~~~~~ 435 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPG------LVEVVLRKINWERR-KGNLEDANYKNELYSSIYEGKEN 435 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCc------hhhhHHHHHhHHHH-hcchhhhhHHHHHHHHhcccccC
Confidence 889999999999999999999999999999987653 23455677888887 88888888 4433333321
Q ss_pred -CCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001060 532 -QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 595 (1169)
Q Consensus 532 -p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 595 (1169)
.....++..++.|-...-. ..+.++.++..++...+++. .+|..++.|+...+
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~--d~~~a~~~l~~~~~~~~~~k---------~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIRE--DADLARIILLEANDILPDCK---------VLYLELIRFELIQP 489 (577)
T ss_pred cchhHHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhcCCccH---------HHHHHHHHHHHhCC
Confidence 1123555677777766532 25667888888888776654 58999999998877
No 67
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=7.9e-13 Score=153.48 Aligned_cols=201 Identities=15% Similarity=0.118 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
..+..|.-.++.+.||+.|+++|. +||...-.+..++-=.....++++|+..|+.+|.++|.+..+|+-++.
T Consensus 426 a~GNcfSLQkdh~~Aik~f~RAiQ--------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 426 ALGNCFSLQKDHDTAIKCFKRAIQ--------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGT 497 (638)
T ss_pred HhcchhhhhhHHHHHHHHHHHhhc--------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhh
Confidence 346778888888888888888888 777655444444433345567888888888888888888888988888
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
.+.++++++.|.-.|++|++++ |.+..+...++.++.+.|+.|+|+.+|++| ..++|.++--.+..+.++..++++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A-~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKA-IHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHH-HhcCCCCchhHHHHHHHHHhhcchHH
Confidence 8888888888888888888888 778888888888888888888899888888 67888888888888888888888888
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHH
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 536 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~ 536 (1169)
|...+++.-++.|.+ ..++..++++..+ .|+.+.|..-|-=|+.++|.-..
T Consensus 576 al~~LEeLk~~vP~e------s~v~~llgki~k~-~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 576 ALQELEELKELVPQE------SSVFALLGKIYKR-LGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHhCcch------HHHHHHHHHHHHH-HccchHHHHhhHHHhcCCCccch
Confidence 888888887777532 4567677777554 88888888888888888876554
No 68
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=2.7e-12 Score=140.61 Aligned_cols=225 Identities=14% Similarity=0.060 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChH
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e 407 (1169)
+++..+...-+.++. ++.-+.....+.+...--+||++++...|+.+|..+..+.+..+..+...+.+|+++
T Consensus 470 k~~~~aqqyad~aln--------~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ld 541 (840)
T KOG2003|consen 470 KDFADAQQYADIALN--------IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLD 541 (840)
T ss_pred cchhHHHHHHHHHhc--------ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHH
Confidence 355555555566655 444444444444433345799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 487 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al 487 (1169)
+|+++|-+...+. .++.+++...+.+++...+...|+++|.++ ..+.|+++.++.++++++.+.|+-..|..++-...
T Consensus 542 eald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~-~slip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 542 EALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA-NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh-cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 9999999988877 789999999999999999999999999998 88999999999999999999999999999988888
Q ss_pred HhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 488 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
..+|.+ .+....++.++.. ..-.++|+..|++|--+-|+-..+-+..+.--.+.|+ ...+..+|......
T Consensus 620 ryfp~n------ie~iewl~ayyid-tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn---yqka~d~yk~~hrk 689 (840)
T KOG2003|consen 620 RYFPCN------IETIEWLAAYYID-TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN---YQKAFDLYKDIHRK 689 (840)
T ss_pred cccCcc------hHHHHHHHHHHHh-hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHh
Confidence 888632 2233333333222 4447899999999998888766555444544445555 55567777777777
Q ss_pred CCCCC
Q 001060 568 NSDSP 572 (1169)
Q Consensus 568 ~~~~~ 572 (1169)
+|.+-
T Consensus 690 fpedl 694 (840)
T KOG2003|consen 690 FPEDL 694 (840)
T ss_pred Cccch
Confidence 76553
No 69
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=3e-11 Score=142.87 Aligned_cols=119 Identities=8% Similarity=0.031 Sum_probs=84.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhcCCHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV-DIWLHYCIFAINTYGDPETIRRL 192 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~-~lw~~y~~~~~~~~~~~e~Ar~~ 192 (1169)
+|++++|+++..+.-...+...-++...+....+.|+++.|...|+++.+..|++. ......+.+.. ..|+++.|+..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHH
Confidence 47888888777766554433344555556666888888888888888888777653 33334466666 67888888888
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 193 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 193 ~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
++++++..| .+..............|+|+.|..++.++.+.
T Consensus 176 l~~~~~~~P---~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 176 VDKLLEVAP---RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHhcCC---CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Confidence 888888444 35555666666667778888888888777654
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=5.9e-12 Score=149.65 Aligned_cols=293 Identities=7% Similarity=-0.030 Sum_probs=223.9
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY-GYWKKYADHEARVGSMDKVVEV 157 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~-~~W~~~a~~e~~~~~~e~A~~l 157 (1169)
+.+..+.+.+.++.+..|...-.+...++.+... |+.+++...|+++++.+|++. .....++.+.+..|+++.|...
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~--g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQR--GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 3477899999999999999888888889988874 699999999999999999985 6777789999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHhc
Q 001060 158 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVA-MIYTRILEN 236 (1169)
Q Consensus 158 ~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~-~iY~r~L~~ 236 (1169)
+++.++..|.+..++..++..+. ..|+.+.+++.+++.++....+ ..- +..+. ..+...+
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~-~~~d~~~a~~~l~~l~k~~~~~---~~~-------------~~~l~~~a~~~~l-- 236 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYI-RSGAWQALDDIIDNMAKAGLFD---DEE-------------FADLEQKAEIGLL-- 236 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHcCCCC---HHH-------------HHHHHHHHHHHHH--
Confidence 99999999999999999999998 8899999999999999842221 110 00000 0000000
Q ss_pred chhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHH
Q 001060 237 PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKY 316 (1169)
Q Consensus 237 p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~ 316 (1169)
.. +
T Consensus 237 ------------~~---------------~-------------------------------------------------- 239 (409)
T TIGR00540 237 ------------DE---------------A-------------------------------------------------- 239 (409)
T ss_pred ------------HH---------------H--------------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH----
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY---- 392 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~---- 392 (1169)
..++.+..++.+... .+...+++..++..++..+...|++++|+.++++++...|.+...
T Consensus 240 ------------~~~~~~~~L~~~~~~----~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~ 303 (409)
T TIGR00540 240 ------------MADEGIDGLLNWWKN----QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPL 303 (409)
T ss_pred ------------HHhcCHHHHHHHHHH----CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHH
Confidence 000000011111110 000122457889999999999999999999999999999988764
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh--HHHHHHHHHHHHcCCHHHHHHHHHH--HhhhcCCChHHHHHHHHH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKRLP--EIHLFAARFKEQNGDIDGARAAYQL--VHTETSPGLLEAIIKHAN 468 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~--~l~~~~a~~~e~~g~~~~A~~~~~~--a~~~~~P~~~~~~~~~a~ 468 (1169)
...++. ...++.+.++..++++++.+ |+++ .+...+|.++.+.|++++|++.|++ + .+..|+... +..++.
T Consensus 304 l~~~~~--l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~-~~~La~ 378 (409)
T TIGR00540 304 CLPIPR--LKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDAND-LAMAAD 378 (409)
T ss_pred HHHhhh--cCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHH-HHHHHH
Confidence 222222 22467888999999999987 8999 8899999999999999999999994 4 567887765 558999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhh
Q 001060 469 MERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
++.++|+.++|..+|++++...
T Consensus 379 ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 71
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=2.1e-11 Score=133.73 Aligned_cols=208 Identities=17% Similarity=0.071 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 001060 325 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 404 (1169)
Q Consensus 325 ~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g 404 (1169)
..+++++.+...|.++|. -+....+..++.+-.++..|+.++++..|-+.....-++.++.+.++.+++...
T Consensus 501 f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred eecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 345789999999999998 577788899999888899999999999999999888999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 405 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 405 ~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
+...|+++|..+..+. |++|.++-.++.++.+.|+...|..++-.. -...|.+.+..--++.++....-.++++..|+
T Consensus 573 d~aqaie~~~q~~sli-p~dp~ilskl~dlydqegdksqafq~~yds-yryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLI-PNDPAILSKLADLYDQEGDKSQAFQCHYDS-YRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred CHHHHHHHHHHhcccC-CCCHHHHHHHHHHhhcccchhhhhhhhhhc-ccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999877 999999999999999999999999987776 56799999886556666666666799999999
Q ss_pred HHHHhhhCCCccCchHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCC
Q 001060 485 QAIAIEKGKEHSQTLPMLYAQ-YSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS 550 (1169)
Q Consensus 485 ~Al~~~~~~~~~~~~~~l~~~-~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~ 550 (1169)
+|.-+.|+. .-|.. .+.++ +..|++.+|..+|+.....+|.+...+..++.+...+|-
T Consensus 651 kaaliqp~~-------~kwqlmiasc~-rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 651 KAALIQPNQ-------SKWQLMIASCF-RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcCccH-------HHHHHHHHHHH-HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 998887642 23433 34444 449999999999999999999999888777777666554
No 72
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.52 E-value=1.6e-13 Score=156.32 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=72.0
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec--eEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~~~ 1110 (1169)
++|||+|||..+|+++|+++|++||.|+.+.| ++++.+|+++|||||+|.+.++|++||+. +++.|.| +.|+|..+
T Consensus 194 ~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i-~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 194 TNLYVTNLPRTITDDQLDTIFGKYGQIVQKNI-LRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred ceeEEeCCCCcccHHHHHHHHHhcCCEEEEEE-eecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 68999999999999999999999999999876 56777999999999999999999999987 8888866 67889887
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+.+..
T Consensus 273 ~~~~~ 277 (346)
T TIGR01659 273 EEHGK 277 (346)
T ss_pred Ccccc
Confidence 76543
No 73
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=2e-13 Score=132.18 Aligned_cols=79 Identities=29% Similarity=0.476 Sum_probs=69.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++||||||+..+++.+|+.+|..||+|.. |+|-. .+.|||||||++..+|..|+.. +|..|.|..|+||..+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs--vWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRS--VWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCccee--EEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 589999999999999999999999999999 55533 3568999999999999999987 8999999999999988
Q ss_pred CCCCCC
Q 001060 1112 PNTGST 1117 (1169)
Q Consensus 1112 ~~~~~~ 1117 (1169)
.+...+
T Consensus 84 G~~r~~ 89 (195)
T KOG0107|consen 84 GRPRGS 89 (195)
T ss_pred CCcccc
Confidence 765543
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.2e-10 Score=129.36 Aligned_cols=268 Identities=12% Similarity=0.085 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCC--------------------------CChhcHHHHHHHHHHHHHc
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP--------------------------LSVTELENWHNYLDFIERD 369 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~p--------------------------l~~~~~~~W~~yl~~~~~~ 369 (1169)
++..+.+.+....++.++.+.++..++..=||.+. +.|...--|+..+-++.--
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 44445555555666777777766666644444322 2366667788888888778
Q ss_pred CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ 449 (1169)
Q Consensus 370 gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~ 449 (1169)
|.+.+|++.|-+|...++.+...|+.+|..+.-.+..|.|..+|.+|.++. +.+-.-.+.++.=+-+.++++-|.+.|.
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 889999999999999999999999999998888888999999999998877 6666666666666667888999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001060 450 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 528 (1169)
Q Consensus 450 ~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl 528 (1169)
.+ ..+.|.++-+..-.+.+....+.+.+|..+|+.++...+.... ......++.+++....+ .+.+++|+..|+++|
T Consensus 405 ~A-~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 405 QA-LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNKYEEAIDYYQKAL 482 (611)
T ss_pred HH-HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-HhhHHHHHHHHHHHH
Confidence 98 7889999999888888888888999999999999954332110 11123467888888776 999999999999999
Q ss_pred hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH-HHhhC
Q 001060 529 DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF-LGLFG 595 (1169)
Q Consensus 529 ~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~f-e~~~G 595 (1169)
...|.+...+-..+.+-.-+|+ ++.+...|.++|...|++. -..+++...|+- +...|
T Consensus 483 ~l~~k~~~~~asig~iy~llgn---ld~Aid~fhKaL~l~p~n~------~~~~lL~~aie~~~~~~~ 541 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGN---LDKAIDHFHKALALKPDNI------FISELLKLAIEDSECKSG 541 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCccH------HHHHHHHHHHHhhhhhcc
Confidence 9999999999877777777776 6778889999999988874 234566666666 44455
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.6e-10 Score=127.87 Aligned_cols=416 Identities=12% Similarity=0.088 Sum_probs=255.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+....++..|-++|.++|.|--.+..-+..+.++ +++.+|.+=-.+.+.+.|+=...|...+....-+|+|++|+..|
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 3467888888999999988766666555555554 48888888888888888988888888888888889999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-- 236 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-- 236 (1169)
.++|+..|.|..|.-.+.+... . .+.+ +.-+....+|.....-.... ..-....|..+|+.
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~~-----~-----~~~~-----~~~~~~p~~~~~l~~~p~t~--~~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 94 SEGLEKDPSNKQLKTGLAQAYL-----E-----DYAA-----DQLFTKPYFHEKLANLPLTN--YSLSDPAYVKILEIIQ 156 (539)
T ss_pred HHHhhcCCchHHHHHhHHHhhh-----H-----HHHh-----hhhccCcHHHHHhhcChhhh--hhhccHHHHHHHHHhh
Confidence 9999988888777655554432 1 1111 12223455666666533332 12222334333332
Q ss_pred -chhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccc---cCCccccccCCccccCcchHHH
Q 001060 237 -PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEE---VQPDATEQTSKPVSAGLTEAEE 312 (1169)
Q Consensus 237 -p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~e~~~~~~~~~~~~~~~ 312 (1169)
.+.++..+.+ ...+.... -++.-..........+... ..|..-+..+.+...+.+....
T Consensus 157 ~~p~~l~~~l~-d~r~m~a~----------------~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~ 219 (539)
T KOG0548|consen 157 KNPTSLKLYLN-DPRLMKAD----------------GQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR 219 (539)
T ss_pred cCcHhhhcccc-cHHHHHHH----------------HHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH
Confidence 2222222221 11110000 0000000000000000000 0010000001111111111111
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC
Q 001060 313 L---EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY 389 (1169)
Q Consensus 313 ~---~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~ 389 (1169)
. ..-...++....+.+.+..++..|..+|. ++ .......+....+.+.|.+.+.+...+.+++.....
T Consensus 220 ~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e--------l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ 290 (539)
T KOG0548|consen 220 VKEKAHKEKELGNAAYKKKDFETAIQHYAKALE--------LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL 290 (539)
T ss_pred HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh--------Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH
Confidence 1 01112224455567889999999999998 67 666666666666667777776666666655443322
Q ss_pred HHHHH-------HHHHHHHHcCChHHHHHHHHHHHHHhhc-------------------------cChHHHHHHHHHHHH
Q 001060 390 PEYWI-------RYVLCMEASGSMDLAHNALARATHVFVK-------------------------RLPEIHLFAARFKEQ 437 (1169)
Q Consensus 390 ~e~W~-------~~a~~l~~~g~~e~A~~vl~rAl~~~~p-------------------------~~~~l~~~~a~~~e~ 437 (1169)
-.-.. +.+..+.+.++++.++..|.+++.-+.. ....--...+.-..+
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh
Confidence 11111 1223444456788888888888865521 001111112444567
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001060 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 517 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 517 (1169)
.|++.+|...|.++ ++.+|++..+|.+++.++.++|++..|.+..+.+|+++| .....|+.-+..++. ..++
T Consensus 371 ~gdy~~Av~~YteA-Ikr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p------~~~kgy~RKg~al~~-mk~y 442 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEA-IKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP------NFIKAYLRKGAALRA-MKEY 442 (539)
T ss_pred ccCHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc------hHHHHHHHHHHHHHH-HHHH
Confidence 89999999999998 888999999999999999999999999999999999975 345677777777766 7889
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 518 EKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 518 e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
++|.+.|+++++++|.+..+...|...-..
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 999999999999999999988877665553
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=1.9e-11 Score=132.46 Aligned_cols=199 Identities=13% Similarity=0.101 Sum_probs=171.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
....|..++..+...|++++++..|++++...|.+...|..++.++...|++++|...|+++++.. |++..++..++.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 357788888888899999999999999999999999999999999999999999999999999987 7888999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 435 KEQNGDIDGARAAYQLVHTET--SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~--~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
+...|++++|+..|+++ +.. .+.....|..++.++...|++++|...|++++...+. .+..+..++.+++.
T Consensus 109 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~ 181 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQA-IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ------RPESLLELAELYYL 181 (234)
T ss_pred HHHcccHHHHHHHHHHH-HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------ChHHHHHHHHHHHH
Confidence 99999999999999998 443 3556778999999999999999999999999998753 25678888888877
Q ss_pred HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001060 513 VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 565 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral 565 (1169)
.|++++|..+++++++..|.+...+...+.+....++ .+.++.+.+.+.
T Consensus 182 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 -RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQ 230 (234)
T ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHH
Confidence 9999999999999999988888777777777776665 344555555543
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=1.2e-11 Score=133.93 Aligned_cols=199 Identities=13% Similarity=0.075 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
..+...|...+++++++..|+++++ .+|.....|..++..+...|++++++..|++++...|.+..+|..++
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~--------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALE--------HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3446678889999999999999998 56777889999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 398 LCMEASGSMDLAHNALARATHVFV-KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~-p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
.++...|++++|...|++++.... +....++..++.++...|++++|...|.++ ++.+|++...|..++.++...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA-LQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999997431 345678888999999999999999999998 788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 477 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
++|..++++++...+. .+..+...+.+... .|+.++|+.+++.+....|
T Consensus 186 ~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 186 KDARAYLERYQQTYNQ------TAESLWLGIRIARA-LGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhhCc
Confidence 9999999999998532 24555566777665 8999999999888776543
No 78
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.46 E-value=3.4e-13 Score=150.99 Aligned_cols=133 Identities=23% Similarity=0.397 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 101 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV-GSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 101 aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~-~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
.|..+.++.... +.++.||++|++++...+.+..+|..+|.+|... ++.+.|.+||+++|+.+|.+.++|..|+.|+
T Consensus 3 v~i~~m~~~~r~--~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRT--EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 699999998885 4799999999999976677899999999999995 5566699999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 180 INTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 180 ~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
+ ..++.+.||.+|||++..++.+..+..||..|++||...|+++.+++|++|+.+.
T Consensus 81 ~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 I-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp H-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred H-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9 7899999999999999988776657789999999999999999999999999987
No 79
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.7e-10 Score=134.86 Aligned_cols=392 Identities=13% Similarity=0.154 Sum_probs=265.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh--hcCCHHHHHHHHHHHHH
Q 001060 121 RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAIN--TYGDPETIRRLFERGLA 198 (1169)
Q Consensus 121 r~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~--~~~~~e~Ar~~~erAl~ 198 (1169)
+..++.-+...+.++.....|+.+..+.|++++.+..=+.+..+.|.+..+|+.|+.=... ..++...+...|++||.
T Consensus 99 i~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 99 IRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 3445666677788888888889999999999999999999999999999999999875552 23566788889999994
Q ss_pred hcCCCCCCHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHhcCCCccccCHHHHHH
Q 001060 199 YVGTDYLSFPLWDKYIEYEYMQ-------QEWSRVAMIYTRILENPI---QQLDRYFSSFKEFAASRPLSELRTAEEVDA 268 (1169)
Q Consensus 199 ~~g~d~~s~~lw~~y~~~e~~~-------~~~~~a~~iY~r~L~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~eea~~ 268 (1169)
|+.+..||..|+.|.... +.++..|.+|.|+|..-. ..-..+|..|.+|+..
T Consensus 179 ----dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~-------------- 240 (881)
T KOG0128|consen 179 ----DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVT-------------- 240 (881)
T ss_pred ----ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHH--------------
Confidence 788999999999999875 357889999999998622 2335566666665322
Q ss_pred HHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 001060 269 AAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHV 348 (1169)
Q Consensus 269 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v 348 (1169)
|..+.+.++.+..|...+..++++-
T Consensus 241 -------------------------------------------------------~l~n~~~~qv~a~~~~el~~~~D~~ 265 (881)
T KOG0128|consen 241 -------------------------------------------------------YLCNVEQRQVIALFVRELKQPLDED 265 (881)
T ss_pred -------------------------------------------------------HHHhHHHHHHHHHHHHHHhccchhh
Confidence 1111222333334444444332211
Q ss_pred CCCChhcHHHHH--HHHHHHH-----HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001060 349 KPLSVTELENWH--NYLDFIE-----RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV 421 (1169)
Q Consensus 349 ~pl~~~~~~~W~--~yl~~~~-----~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~ 421 (1169)
.-..++.-|+ .+.+.+. ...+..+.+..|++.+...+.....|+.|+.+....|+.-.-..+++|++.-.
T Consensus 266 --~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~- 342 (881)
T KOG0128|consen 266 --TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM- 342 (881)
T ss_pred --hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc-
Confidence 0011222222 1222111 11223456677888888888888899999999999999888888999998766
Q ss_pred ccChHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhCCCccCch
Q 001060 422 KRLPEIHLFAARFKEQ-NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN-LEDAFSLYEQAIAIEKGKEHSQTL 499 (1169)
Q Consensus 422 p~~~~l~~~~a~~~e~-~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~-~e~A~~iy~~Al~~~~~~~~~~~~ 499 (1169)
..+..+|+.|+.++.. ++--+.+..++-++ +..+|-...+|-++-..+.|.+. .......+++++...
T Consensus 343 ~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra-~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~--------- 412 (881)
T KOG0128|consen 343 VLDRALWIGYGVYLDTELKVPQRGVSVHPRA-VRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT--------- 412 (881)
T ss_pred cccHHHHhhhhhhcccccccccccccccchh-hcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH---------
Confidence 6679999999977643 34444566677777 67788888888877755545443 344555667766653
Q ss_pred HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHhhhc----C----CCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001060 500 PMLYAQYSRFLHLV-----SRNAEKARQILVDSLDHV----Q----LSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 566 (1169)
Q Consensus 500 ~~l~~~~a~~~~~~-----~g~~e~Ar~i~~kAl~~~----p----~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~ 566 (1169)
-.++..|..+..+. ..+++.-|+.|..|.... . ....++..|+.+|.++.. +.+..|.++.-++.
T Consensus 413 ~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~--nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 413 VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLK--NMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh--chhhhhHhhhcccc
Confidence 12444444333331 124566677777776632 1 123677789999988742 26778888887777
Q ss_pred cCCCCCCCCCHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 001060 567 SNSDSPSTANAAEREE-LSCVFLEFLGLFGDAQLIKKAEDRHAR 609 (1169)
Q Consensus 567 ~~~~~~~~l~~~~~~~-i~~~~l~fe~~~Gd~~~i~~v~~R~~~ 609 (1169)
.... +.. .|-.|+..|..||+..++++++++...
T Consensus 491 y~~~---------~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~ 525 (881)
T KOG0128|consen 491 YGGG---------SIAGKWLEAINLEREYGDGPSARKVLRKAYS 525 (881)
T ss_pred CCcc---------hHHHHHHHHHhHHHHhCCchhHHHHHHHHHh
Confidence 6432 233 899999999999999999996665543
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=2.1e-11 Score=138.18 Aligned_cols=147 Identities=12% Similarity=-0.044 Sum_probs=121.2
Q ss_pred CchHHHHHHHHHHhCCC----CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSS----DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE 156 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~----d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~ 156 (1169)
.+..+.++.++|..+|. ....|+.++.++... |+.++|+..|+++++.+|++..+|..++..+...|++++|+.
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSL--GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45788999999975553 356799999998885 599999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001060 157 VYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234 (1169)
Q Consensus 157 l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L 234 (1169)
.|+++|++.|.+...|...+..+. ..|++++|.+.|+++++..+.++. ..+|... ....++.++|...|.+.+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l---~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDPY-RALWLYL---AESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH---HHccCCHHHHHHHHHHHH
Confidence 999999999999999999998887 789999999999999996665431 2344322 223456677777665544
No 81
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=9.6e-11 Score=133.56 Aligned_cols=199 Identities=14% Similarity=0.086 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
+-.|...+++.+|++.|-++.. +|+.--..|..|+.-+--.+..++++..|-+|-...+....=.+-++.-+
T Consensus 319 g~YYl~i~k~seARry~SKat~--------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATT--------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEY 390 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhh--------cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHH
Confidence 5567778999999999999987 89999999999999888888999999999999999887655455555556
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh---cCCC---hHHHHHHHHHHHHHcC
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE---TSPG---LLEAIIKHANMERRLG 474 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~---~~P~---~~~~~~~~a~~e~r~g 474 (1169)
.+.++++.|...|..|+.++ |.+|.+....+-+....+.+.+|...|+.++.. ..+. -..+|.+++.++++++
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 66889999999999999999 899999999999999999999999999987421 1222 2245899999999999
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 475 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 475 ~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
.+++|+..|+++|...|.+ +..+...+.+... .|+++.|...|.+||-+.|++.
T Consensus 470 ~~~eAI~~~q~aL~l~~k~------~~~~asig~iy~l-lgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKD------ASTHASIGYIYHL-LGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCccH
Confidence 9999999999999998643 5567666666444 9999999999999999999985
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.44 E-value=2e-11 Score=125.31 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=161.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC
Q 001060 360 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 439 (1169)
Q Consensus 360 ~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g 439 (1169)
..++--+.+.||+..|...++++|..+|.+...|..++.++.+.|..+.|.+.|++|+.+. |++.+++..|+.|++.+|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 3344445788999999999999999999999999999999999999999999999999988 899999999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 440 DIDGARAAYQLVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 440 ~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
.+++|...|+++ +. .|. ....|.+.+.+-.+.|+++.|+.+|+++|+++|+. |.....+++.++. .|+
T Consensus 118 ~~~eA~q~F~~A-l~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~------~~~~l~~a~~~~~-~~~ 188 (250)
T COG3063 118 RPEEAMQQFERA-LA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF------PPALLELARLHYK-AGD 188 (250)
T ss_pred ChHHHHHHHHHH-Hh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC------ChHHHHHHHHHHh-ccc
Confidence 999999999998 33 454 45679999999999999999999999999998753 5567788899888 999
Q ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChh
Q 001060 517 AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK 552 (1169)
Q Consensus 517 ~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~ 552 (1169)
+-.||..+++-....+-+...+.--+.|+..+|+..
T Consensus 189 y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 189 YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH
Confidence 999999999999887777765556778888888743
No 83
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=1.2e-10 Score=137.79 Aligned_cols=282 Identities=9% Similarity=0.015 Sum_probs=209.0
Q ss_pred HHHHhCCCC---HHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001060 90 NIVKANSSD---FSAWTAL-LEETEKLAQDNIVKIRRVYDAFLAEFPLCYG-YWKKYADHEARVGSMDKVVEVYERAVQG 164 (1169)
Q Consensus 90 ~al~~nP~d---~~aw~~L-~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~-~W~~~a~~e~~~~~~e~A~~l~eraL~~ 164 (1169)
+++..+|.+ ......+ +..... .|+++++...|+++.+..|++.- .....+++.+..|++++|...+++.+..
T Consensus 105 k~l~~~~~~~~~p~l~~llaA~aA~~--~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~ 182 (398)
T PRK10747 105 KLMTRNADHAEQPVVNYLLAAEAAQQ--RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV 182 (398)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 444444443 2333333 444355 46999999999999999999853 3345589999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHH
Q 001060 165 VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRY 244 (1169)
Q Consensus 165 ~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~ 244 (1169)
.|.+..+....+..+. ..|+.+++.+++++..+....+ ... ..++..++.
T Consensus 183 ~P~~~~al~ll~~~~~-~~gdw~~a~~~l~~l~k~~~~~---~~~----------------~~~l~~~a~---------- 232 (398)
T PRK10747 183 APRHPEVLRLAEQAYI-RTGAWSSLLDILPSMAKAHVGD---EEH----------------RAMLEQQAW---------- 232 (398)
T ss_pred CCCCHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHcCCCC---HHH----------------HHHHHHHHH----------
Confidence 9999999999999998 7899999999999998843321 110 110110000
Q ss_pred HHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH
Q 001060 245 FSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY 324 (1169)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y 324 (1169)
.......... .+.+.+.++
T Consensus 233 ~~l~~~~~~~-----------------------------------------------------~~~~~l~~~-------- 251 (398)
T PRK10747 233 IGLMDQAMAD-----------------------------------------------------QGSEGLKRW-------- 251 (398)
T ss_pred HHHHHHHHHh-----------------------------------------------------cCHHHHHHH--------
Confidence 0000000000 000000000
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 001060 325 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 404 (1169)
Q Consensus 325 ~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g 404 (1169)
++..-+ ..+++..++..|+..+...|+.++|..+.++++. .+.++++...|+.+. .+
T Consensus 252 ------------w~~lp~--------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l~--~~ 308 (398)
T PRK10747 252 ------------WKNQSR--------KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRLK--TN 308 (398)
T ss_pred ------------HHhCCH--------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhcc--CC
Confidence 111101 2245578899999999999999999999999998 577888888888753 48
Q ss_pred ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 405 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 405 ~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
+.++++..+++.++.+ |+++.+++.+|+++.+.+++++|+..|+++ .+..|++. .+..++.++.++|+.++|..+|+
T Consensus 309 ~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~a-l~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 309 NPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAA-LKQRPDAY-DYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred ChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999999999988 899999999999999999999999999998 78899864 46678999999999999999999
Q ss_pred HHHHhh
Q 001060 485 QAIAIE 490 (1169)
Q Consensus 485 ~Al~~~ 490 (1169)
+++...
T Consensus 386 ~~l~~~ 391 (398)
T PRK10747 386 DGLMLT 391 (398)
T ss_pred HHHhhh
Confidence 999865
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.43 E-value=4.9e-10 Score=120.02 Aligned_cols=309 Identities=14% Similarity=0.104 Sum_probs=179.9
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 173 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 173 (1169)
.+|.|++-...|+..+.. .+.+..|...|-++++.+|+++...+.-+-.++..|.-.-|+.=+.|.|.+-|+-...-+
T Consensus 33 ~~~advekhlElGk~lla--~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLA--RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 456677777777776665 357777888888888888888877777788888888777777777888877776666666
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHhcch
Q 001060 174 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ---------------QEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 174 ~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~---------------~~~~~a~~iY~r~L~~p~ 238 (1169)
.-+..++ ..|.++.|..-|...|+..+.+ ...-..+-+..... |+...|+.....+|++-+
T Consensus 111 QRg~vll-K~Gele~A~~DF~~vl~~~~s~---~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 111 QRGVVLL-KQGELEQAEADFDQVLQHEPSN---GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred Hhchhhh-hcccHHHHHHHHHHHHhcCCCc---chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 6666666 6777788877788777743322 11112222211111 111222222222221100
Q ss_pred hhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHH
Q 001060 239 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 318 (1169)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~ 318 (1169)
= + ..+..
T Consensus 187 W---------------------------------------------------------------------d----a~l~~ 193 (504)
T KOG0624|consen 187 W---------------------------------------------------------------------D----ASLRQ 193 (504)
T ss_pred c---------------------------------------------------------------------h----hHHHH
Confidence 0 0 00333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
.|.+.|...++...||..+..+-+ +...+.+..+....++-..||.+..+...+.||+.+|.+-..+-.|-.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~ask--------Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASK--------LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHh--------ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 455667777777777777776655 666777788888888778888888888888899888877654433322
Q ss_pred H------H------HHcCChHHHHHHHHHHHHHhhccChHH----HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 399 C------M------EASGSMDLAHNALARATHVFVKRLPEI----HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 399 ~------l------~~~g~~e~A~~vl~rAl~~~~p~~~~l----~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
+ + ...+++.+++...++.++.. |..+.+ +-.+..+...-+++-+|+..+.++ +++.|++.++
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev-L~~d~~dv~~ 343 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV-LDIDPDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CcccceeeeeeheeeecccccCCHHHHHHHHHHH-HhcCchHHHH
Confidence 1 1 11123334444444444332 221211 112233334445555555555555 4555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
+..++..+.-...|+.|+.-|++|++.++
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 55555555555555556666665555543
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=2.7e-09 Score=125.85 Aligned_cols=410 Identities=13% Similarity=0.047 Sum_probs=279.3
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc--CCCHHHHHH
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV--TYSVDIWLH 174 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~--P~s~~lw~~ 174 (1169)
+|...|..|.-.+... |++..+.++||+++..-=...+.|..++.-+...|.-.+|+.+.+.++... |.+....+.
T Consensus 321 nd~ai~d~Lt~al~~~--g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRC--GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 5777777777666664 599999999999998777788999999999999999999999999999999 777777777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCC---CCC---HHHHHHHHHHHHHh-------hhHHHHHHHHHHHHhcchhhH
Q 001060 175 YCIFAINTYGDPETIRRLFERGLAYVGTD---YLS---FPLWDKYIEYEYMQ-------QEWSRVAMIYTRILENPIQQL 241 (1169)
Q Consensus 175 y~~~~~~~~~~~e~Ar~~~erAl~~~g~d---~~s---~~lw~~y~~~e~~~-------~~~~~a~~iY~r~L~~p~~~~ 241 (1169)
-.+...+..+..+++..+-.+++...+.. ... ..+...|......- -...++.+.|++++++.+.+.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 77777778888899988888888854311 111 11222222211111 124668888999998866666
Q ss_pred HHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHH
Q 001060 242 DRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVRE 321 (1169)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~ 321 (1169)
..+|...-.+...+.+.. |.......+.. . ...+.. .+..+.
T Consensus 479 ~~if~lalq~A~~R~l~s------Al~~~~eaL~l----------~------------------~~~~~~----~whLLA 520 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTS------ALDYAREALAL----------N------------------RGDSAK----AWHLLA 520 (799)
T ss_pred hHHHHHHHHHHHHHhHHH------HHHHHHHHHHh----------c------------------CCccHH----HHHHHH
Confidence 666665555544433221 11100000000 0 001111 222334
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH-----
Q 001060 322 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY----- 396 (1169)
Q Consensus 322 ~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~----- 396 (1169)
.++...+++..|+.+.+.++. .-+.+..+-+--+..+...+|.+.++......| .+|...
T Consensus 521 LvlSa~kr~~~Al~vvd~al~--------E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L-------~~we~~~~~q~ 585 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAALE--------EFGDNHVLMDGKIHIELTFNDREEALDTCIHKL-------ALWEAEYGVQQ 585 (799)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--------HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH-------HHHHhhhhHhh
Confidence 466677788888887777776 334444444444555555566666655555554 556511
Q ss_pred ----HHHHHH-------cCChHHHHHHHHHHHHHh------------hc------c-------ChHHHHHHHHHHHHcCC
Q 001060 397 ----VLCMEA-------SGSMDLAHNALARATHVF------------VK------R-------LPEIHLFAARFKEQNGD 440 (1169)
Q Consensus 397 ----a~~l~~-------~g~~e~A~~vl~rAl~~~------------~p------~-------~~~l~~~~a~~~e~~g~ 440 (1169)
+..+.. .++...|...+.++.... .| . ...+|+..+.+..+.++
T Consensus 586 ~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~ 665 (799)
T KOG4162|consen 586 TLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGN 665 (799)
T ss_pred hhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCC
Confidence 111111 112223333333332211 01 1 23688899999999999
Q ss_pred HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH--H
Q 001060 441 IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA--E 518 (1169)
Q Consensus 441 ~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~--e 518 (1169)
-++|+.++.++ ..+.|....+|+..+.+....|..++|.+.|..|+.++|++ +.....++.++.+ .|+. .
T Consensus 666 ~~~a~~CL~Ea-~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------v~s~~Ala~~lle-~G~~~la 737 (799)
T KOG4162|consen 666 DDEARSCLLEA-SKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------VPSMTALAELLLE-LGSPRLA 737 (799)
T ss_pred chHHHHHHHHH-HhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHH-hCCcchH
Confidence 99999999998 78899999999999999999999999999999999999753 4466678888776 7764 4
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 519 KARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 519 ~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
++|.++..|++.+|.+...|..+...-...|+ .+.+-.||.-+++....+|
T Consensus 738 ~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd---~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 738 EKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD---SKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc---hHHHHHHHHHHHhhccCCC
Confidence 55559999999999999999999999999998 5668889999988776665
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.41 E-value=5.9e-11 Score=134.56 Aligned_cols=219 Identities=8% Similarity=-0.026 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChh-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChH
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~-~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e 407 (1169)
+.+.+|..|.++|.+ .++++. ....|...+..+...|+.+.|+..|++++...|.++++|..++.++...|+++
T Consensus 41 ~~e~~i~~~~~~l~~-----~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 41 QQEVILARLNQILAS-----RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred HHHHHHHHHHHHHcc-----ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 455667777777763 234444 36789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 487 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al 487 (1169)
+|...|++++++. |++..+|+.++.++...|++++|...|+++ ++++|++... ..+..+....+++++|...|++++
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a-l~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAF-YQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999999987 899999999999999999999999999998 7889998732 222233455788999999998877
Q ss_pred HhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh-------hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHH
Q 001060 488 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL-------DHVQLSKPLLEALIHFESIQSSPKQIDFLEQL 560 (1169)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl-------~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l 560 (1169)
...+. ..|. ++..... .|++.++ ..++.++ ++.|.....|..++......|+ .+.+..+
T Consensus 193 ~~~~~--------~~~~-~~~~~~~-lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~---~~~A~~~ 258 (296)
T PRK11189 193 EKLDK--------EQWG-WNIVEFY-LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD---LDEAAAL 258 (296)
T ss_pred hhCCc--------cccH-HHHHHHH-ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 55421 1222 2222222 5555433 2333333 4445555667777777777777 6779999
Q ss_pred HHHHhhcCC
Q 001060 561 VDKFLMSNS 569 (1169)
Q Consensus 561 ~eral~~~~ 569 (1169)
|++++..++
T Consensus 259 ~~~Al~~~~ 267 (296)
T PRK11189 259 FKLALANNV 267 (296)
T ss_pred HHHHHHhCC
Confidence 999998765
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.41 E-value=1.1e-09 Score=117.29 Aligned_cols=105 Identities=12% Similarity=0.141 Sum_probs=85.5
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHH
Q 001060 130 EFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPL 209 (1169)
Q Consensus 130 ~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~l 209 (1169)
-.|....-.+.++.-.+..+++..|..-|..++...|++....+.-+..++ ..|+-..|..-+++.|+.- +||....|
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelK-pDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELK-PDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcC-ccHHHHHH
Confidence 345556667788888999999999999999999999999999888888888 7898888999999999843 55554443
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001060 210 WDKYIEYEYMQQEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 210 w~~y~~~e~~~~~~~~a~~iY~r~L~~p~ 238 (1169)
.-...++++|++++|..=|+.+|...+
T Consensus 111 --QRg~vllK~Gele~A~~DF~~vl~~~~ 137 (504)
T KOG0624|consen 111 --QRGVVLLKQGELEQAEADFDQVLQHEP 137 (504)
T ss_pred --HhchhhhhcccHHHHHHHHHHHHhcCC
Confidence 334456779999999999999988743
No 88
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.38 E-value=4.6e-12 Score=144.39 Aligned_cols=82 Identities=24% Similarity=0.371 Sum_probs=74.5
Q ss_pred CCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1029 ~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
.....++|||+|||+++|+++|+++|+.||+|++|+| +++..+++++|||||+|.+.++|.+||+. +++.|.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i-~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRI-MRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3446799999999999999999999999999999876 66778999999999999999999999975 899999999999
Q ss_pred Eecc
Q 001060 1108 EERR 1111 (1169)
Q Consensus 1108 ~~~r 1111 (1169)
.+++
T Consensus 182 ~~a~ 185 (346)
T TIGR01659 182 SYAR 185 (346)
T ss_pred eccc
Confidence 8665
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.37 E-value=1e-09 Score=131.49 Aligned_cols=398 Identities=14% Similarity=0.081 Sum_probs=253.5
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
...++..|-+++++++.-.-+|..|+.++.... +..+|+++|++++++++.+...|...++.+.+..+++.|..+.-+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~--Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD--DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 567888999999999999999999999999864 889999999999999999999999999999999999999999766
Q ss_pred HHhccCC--CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-c
Q 001060 161 AVQGVTY--SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN-P 237 (1169)
Q Consensus 161 aL~~~P~--s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~-p 237 (1169)
.-+..|- ...-|.+..-++. ..++.-.+..-|+.|+. .++.+..+|....+.+.+.|++..|.++|.++... |
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyL-ea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYL-EAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhcccccc-CccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 6665542 3455777666666 66788889999999998 67778899999999999999999999999999987 5
Q ss_pred hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHH-HHHHH
Q 001060 238 IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE-ELEKY 316 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~k~ 316 (1169)
..-+.+++..-.+-... ..+++......+....... .....+ ..+.- +..+.
T Consensus 628 ~s~y~~fk~A~~ecd~G-------kYkeald~l~~ii~~~s~e---~~~q~g-----------------LaE~~ir~akd 680 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNG-------KYKEALDALGLIIYAFSLE---RTGQNG-----------------LAESVIRDAKD 680 (1238)
T ss_pred HhHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHH---HHhhhh-----------------HHHHHHHHHHH
Confidence 55555555443322111 1122211111111000000 000000 00000 00000
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHH-----------------------HHcCCh
Q 001060 317 IAVREEMYKKAKE-FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI-----------------------ERDGDF 372 (1169)
Q Consensus 317 i~~~~~~y~~~~~-~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~-----------------------~~~gd~ 372 (1169)
... .-++.+..+ ++..|+.|.-.|. |.. -.+.-.|.-..+.. +..+..
T Consensus 681 ~~~-~gf~~kavd~~eksie~f~~~l~----h~~---~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l 752 (1238)
T KOG1127|consen 681 SAI-TGFQKKAVDFFEKSIESFIVSLI----HSL---QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGAL 752 (1238)
T ss_pred HHH-HHHhhhhhHHHHHHHHHHHHHHH----Hhh---hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccC
Confidence 000 011112211 2222233322222 000 11222333332211 111111
Q ss_pred --HH----HHHHHHHHHHhccCCHHHHHHHHHHHHH----c----CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 373 --NK----VVKLYERCLIACANYPEYWIRYVLCMEA----S----GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 373 --~~----a~~lyeraL~~~~~~~e~W~~~a~~l~~----~----g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
++ +...|-+.|.. ..++--|+.++.-+.+ . .+...|+.++.++++.. -++..+|.+++.+ -.-
T Consensus 753 ~~~d~l~Lg~~c~~~hlsl-~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~ 829 (1238)
T KOG1127|consen 753 KKNDLLFLGYECGIAHLSL-AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGI 829 (1238)
T ss_pred cchhHHHHHHHHhhHHHHH-hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hcc
Confidence 11 11122222222 1224567777654333 1 23346888888888877 6788888888876 445
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 518 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e 518 (1169)
|++.-|..+|-+. +...|...-.|.+++.+.....+++-|...|.++..+.|.+ ..-|+.-+.+... .|++-
T Consensus 830 gnva~aQHCfIks-~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n------l~~WlG~Ali~ea-vG~ii 901 (1238)
T KOG1127|consen 830 GNVACAQHCFIKS-RFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN------LVQWLGEALIPEA-VGRII 901 (1238)
T ss_pred chhhhhhhhhhhh-hhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchh------hHHHHHHHHhHHH-HHHHH
Confidence 7888888888887 67788888889998888888888889999998888887532 4457777777665 78888
Q ss_pred HHHHHHHHHhhh
Q 001060 519 KARQILVDSLDH 530 (1169)
Q Consensus 519 ~Ar~i~~kAl~~ 530 (1169)
++..+|.-..+.
T Consensus 902 ~~~~lfaHs~el 913 (1238)
T KOG1127|consen 902 ERLILFAHSDEL 913 (1238)
T ss_pred HHHHHHHhhHHh
Confidence 888888774443
No 90
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.37 E-value=4.3e-12 Score=151.69 Aligned_cols=74 Identities=34% Similarity=0.481 Sum_probs=66.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcC--CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNF--GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~--G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.++|||+||+.++|+++|+++|++| |.|++|++ .++||||+|++.++|.+||+. |+..|+|+.|+|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---------IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---------ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4789999999999999999999999 99998653 246999999999999999976 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
No 91
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.6e-12 Score=132.35 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=73.2
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
|..-++||||||++.++.+.|+++|++||+|.+..| |.|+.+|++||||||+|.|.++|.+|++...-.|+||+..|..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavv-itd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVV-ITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEE-EeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 445689999999999999999999999999999854 7799999999999999999999999999878899999988875
Q ss_pred c
Q 001060 1110 R 1110 (1169)
Q Consensus 1110 ~ 1110 (1169)
+
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 4
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=4.3e-10 Score=132.51 Aligned_cols=318 Identities=14% Similarity=0.043 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001060 119 KIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV-TYSVDIWLHYCIFAINTYGDPETIRRLFERGL 197 (1169)
Q Consensus 119 ~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~-P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl 197 (1169)
++...++++++.+|+|+..-+.++-.+..+++.+.|.....++|... -++...|..++-.+. ..+++..|..+.+.++
T Consensus 462 kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS-a~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS-AQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh-hhhhhHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777773 345666766665555 6667777777777777
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCC
Q 001060 198 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 277 (1169)
Q Consensus 198 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~ 277 (1169)
.-.|. .+.+-+.-+..+...++.+.+.......| .+|+.-..+.... ++... ....
T Consensus 541 ~E~~~---N~~l~~~~~~i~~~~~~~e~~l~t~~~~L--------~~we~~~~~q~~~--------~~g~~-----~~lk 596 (799)
T KOG4162|consen 541 EEFGD---NHVLMDGKIHIELTFNDREEALDTCIHKL--------ALWEAEYGVQQTL--------DEGKL-----LRLK 596 (799)
T ss_pred HHhhh---hhhhchhhhhhhhhcccHHHHHHHHHHHH--------HHHHhhhhHhhhh--------hhhhh-----hhhh
Confidence 65554 23344445555555566666655554443 2232111110000 00000 0000
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh----
Q 001060 278 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV---- 353 (1169)
Q Consensus 278 ~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~---- 353 (1169)
..... + + ..+++....-+++..... -......++..+ |.+++.|-..
T Consensus 597 ~~l~l---a-----~------------~q~~~a~s~sr~ls~l~a-------~~~~~~~se~~L--p~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 597 AGLHL---A-----L------------SQPTDAISTSRYLSSLVA-------SQLKSAGSELKL--PSSTVLPGPDSLWY 647 (799)
T ss_pred ccccc---C-----c------------ccccccchhhHHHHHHHH-------hhhhhccccccc--CcccccCCCCchHH
Confidence 00000 0 0 001111111112111100 011112244443 3566665432
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
....+|...++...+.+..+.+......+-+.++..+..|+..+..++.+|..++|...|.-|+.+. |+++.+...+|.
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~ 726 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3456788888887888999999999999999999999999999999999999999999999999988 899999999999
Q ss_pred HHHHcCCHHHHHH--HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 434 FKEQNGDIDGARA--AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 434 ~~e~~g~~~~A~~--~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
++.+.|+-.-|.+ ++..+ ++++|.+.++|+.++.+...+|+.++|-.+|..|+++...
T Consensus 727 ~lle~G~~~la~~~~~L~da-lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDA-LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHhCCcchHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 9999886655554 88888 8999999999999999999999999999999999999854
No 93
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.37 E-value=3.3e-12 Score=126.57 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=72.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
-.+|-|-||.+.++.++|+.+|++||.|-+|-| -+++.|+.++|||||-|.+..+|+.|+++ .|.+|+|+.|+|..++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyI-Prdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYI-PRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceec-ccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 478999999999999999999999999999854 57888999999999999999999999988 7999999999999876
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1.1e-10 Score=133.73 Aligned_cols=231 Identities=13% Similarity=0.161 Sum_probs=156.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 193 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~ 193 (1169)
+|.|.+|.-+||.++..+|.+.++|.+++......++=..|+..++|||++.|.|.++.+.++--+. ..+.-..|...+
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt-Neg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT-NEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh-hhhhHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999998887776 556667788888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHH
Q 001060 194 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV 273 (1169)
Q Consensus 194 erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~ 273 (1169)
++.|...+.. .|..-.. ..+....- ...+ ....+..+-..|.+....++.
T Consensus 377 ~~Wi~~~p~y-----~~l~~a~---~~~~~~~~----~s~~--~~~~l~~i~~~fLeaa~~~~~---------------- 426 (579)
T KOG1125|consen 377 DKWIRNKPKY-----VHLVSAG---ENEDFENT----KSFL--DSSHLAHIQELFLEAARQLPT---------------- 426 (579)
T ss_pred HHHHHhCccc-----hhccccC---ccccccCC----cCCC--CHHHHHHHHHHHHHHHHhCCC----------------
Confidence 8888743221 1111100 00000000 0000 000111111111111000000
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh
Q 001060 274 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 353 (1169)
Q Consensus 274 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~ 353 (1169)
+ ++ -++...++.+|.-.++|++++.+|+.+|. .+|
T Consensus 427 -----~-------~D-------------------------pdvQ~~LGVLy~ls~efdraiDcf~~AL~--------v~P 461 (579)
T KOG1125|consen 427 -----K-------ID-------------------------PDVQSGLGVLYNLSGEFDRAVDCFEAALQ--------VKP 461 (579)
T ss_pred -----C-------CC-------------------------hhHHhhhHHHHhcchHHHHHHHHHHHHHh--------cCC
Confidence 0 00 01344456677778888888888888887 566
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
.+..+|.+|+..+-...+.++|+..|.|||.+-|.+..+|+.++..+...|.+++|...|-+||.+.
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 7778888888776666677788888888888888888888888887777888888888888887766
No 95
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2.2e-12 Score=118.23 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=71.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+++||||||++-++|++|.++|++||+|+.| |+--++-+..+.||+||+|-+.++|..|+.- +++.++.+.|+|++.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irri-iMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRI-IMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchhee-EeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 56899999999999999999999999999997 3334666667889999999999999999988 899999999999986
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
-.
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 43
No 96
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=5.7e-09 Score=111.81 Aligned_cols=169 Identities=18% Similarity=0.254 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH-HHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-EAIIKHANM 469 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-~~~~~~a~~ 469 (1169)
.++..+++-+....+++.|+..+.||++.. |++..+-+.+++++...|++..|.+.++++ .+.+|+.. ++.-.+...
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v-~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERV-LEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHH-HHhChHHHHHHHHHHHHH
Confidence 456677777777788999999999999977 889999999999999999999999999998 77788865 456777788
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC
Q 001060 470 ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549 (1169)
Q Consensus 470 e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~ 549 (1169)
+..+|+.++.+..+.++++..++. .+-..++++.....| .+.|...+.+-|...|+-..++ .++.+...-.
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~~g~-------~~~l~l~~lie~~~G-~~~Aq~~l~~Ql~r~Pt~~gf~-rl~~~~l~da 329 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETNTGA-------DAELMLADLIELQEG-IDAAQAYLTRQLRRKPTMRGFH-RLMDYHLADA 329 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHccCCc-------cHHHHHHHHHHHhhC-hHHHHHHHHHHHhhCCcHHHHH-HHHHhhhccc
Confidence 889999999999999999987642 233344444444355 8899999999998888654444 6666666543
Q ss_pred Ch----hHHHHHHHHHHHHhhcCCC
Q 001060 550 SP----KQIDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 550 ~~----~~~~~~r~l~eral~~~~~ 570 (1169)
++ ++...++++..+-+...+.
T Consensus 330 eeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 330 EEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred cccchhhhHHHHHHHHHHHHhhcCC
Confidence 33 2356677777666665543
No 97
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.33 E-value=8.2e-12 Score=145.81 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..+++|||+|||+++++++|+++|++||.|.+++| ++++.+|++||||||+|.+.++|.+||.. +|..|+||.|+|++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i-~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKI-IRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-eEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35689999999999999999999999999999986 56777999999999999999999999986 89999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
+..+.
T Consensus 346 ~~~~~ 350 (352)
T TIGR01661 346 KTNKA 350 (352)
T ss_pred ccCCC
Confidence 87653
No 98
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.3e-10 Score=121.48 Aligned_cols=313 Identities=10% Similarity=0.036 Sum_probs=225.0
Q ss_pred HHHhCCCCHHHHH---HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 91 IVKANSSDFSAWT---ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 91 al~~nP~d~~aw~---~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
++...|.+.+.|. .+++++.. ..-..-+..++-..+.++|+|..+...+++++...|++++|+..|++.+.++|+
T Consensus 187 ~~~~~~~~dwls~wika~Aq~~~~--~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy 264 (564)
T KOG1174|consen 187 AATVPDHFDWLSKWIKALAQMFNF--KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD 264 (564)
T ss_pred heecCCCccHHHHHHHHHHHHHhc--ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh
Confidence 4455666666665 33333332 233445667788888999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHH
Q 001060 168 SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSS 247 (1169)
Q Consensus 168 s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~ 247 (1169)
.+.-.-.|+-++- ..|+++..-.+..+.+..... ...-|..-+..+...+++.+|.-.=.+++.....++..+.-+
T Consensus 265 ~i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~~~---ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilK 340 (564)
T KOG1174|consen 265 NVEAMDLYAVLLG-QEGGCEQDSALMDYLFAKVKY---TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILK 340 (564)
T ss_pred hhhhHHHHHHHHH-hccCHhhHHHHHHHHHhhhhc---chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhc
Confidence 9999999988877 889998888887777763311 223354444444444566666665555555544433332221
Q ss_pred HHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHH
Q 001060 248 FKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKA 327 (1169)
Q Consensus 248 ~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~ 327 (1169)
+......
T Consensus 341 -------------------------------------------------------------------------G~lL~~~ 347 (564)
T KOG1174|consen 341 -------------------------------------------------------------------------GRLLIAL 347 (564)
T ss_pred -------------------------------------------------------------------------cHHHHhc
Confidence 2344566
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH-HHHH-HcCC
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV-LCME-ASGS 405 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a-~~l~-~~g~ 405 (1169)
++.++|+..|+.++. +-|..++.+.-++..|...|.+.+|+.+-..++...+.+.....-++ ..+. ..--
T Consensus 348 ~R~~~A~IaFR~Aq~--------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM--------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred cchHHHHHHHHHHHh--------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchh
Confidence 777778888888887 77777888888888888888888888888888888887776665554 2222 2223
Q ss_pred hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 406 MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 485 (1169)
Q Consensus 406 ~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~ 485 (1169)
-++|.+.+++++++. |....+-...|.+...-|.+..+.+++++. +...|+ ..++..++++..-.+.+.++.+.|..
T Consensus 420 rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~-L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 420 REKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKH-LIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHH-Hhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 477888888888876 777777777888888888888888888887 444553 45777788888888888888888888
Q ss_pred HHHhhhCC
Q 001060 486 AIAIEKGK 493 (1169)
Q Consensus 486 Al~~~~~~ 493 (1169)
|+.++|.+
T Consensus 497 ALr~dP~~ 504 (564)
T KOG1174|consen 497 ALRQDPKS 504 (564)
T ss_pred HHhcCccc
Confidence 88888753
No 99
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.31 E-value=2.4e-08 Score=115.90 Aligned_cols=392 Identities=11% Similarity=0.092 Sum_probs=236.4
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
+.+-++.++.+|+..|...++.-..+-.+..+| +.++|...-..++.-++.+.-=|.-++.+....++|++|+++|+.
T Consensus 23 YkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg--~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~n 100 (700)
T KOG1156|consen 23 YKKGLKLIKQILKKFPEHGESLAMKGLTLNCLG--KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRN 100 (700)
T ss_pred HHhHHHHHHHHHHhCCccchhHHhccchhhccc--chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 556677788888888888888887777777764 778888888888888888888888888888888888888888888
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc---
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP--- 237 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p--- 237 (1169)
||+..|+|..+|..++-+-. +.++++-....-.+.++..+ ....-|..|+.-....+++..|..+.....+.-
T Consensus 101 Al~~~~dN~qilrDlslLQ~-QmRd~~~~~~tr~~LLql~~---~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 101 ALKIEKDNLQILRDLSLLQI-QMRDYEGYLETRNQLLQLRP---SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHhcCCCcHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 88888888888888776666 77777777777666666333 244567777766666677777777766665542
Q ss_pred hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHH
Q 001060 238 IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYI 317 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i 317 (1169)
+.....-+.....+.+..- .+....+++. ..+.+.. .....--.+.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~-~E~g~~q~al-------e~L~~~e--------------------------~~i~Dkla~~ 222 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQIL-IEAGSLQKAL-------EHLLDNE--------------------------KQIVDKLAFE 222 (700)
T ss_pred CCHHHHHHHHHHHHHHHHH-HHcccHHHHH-------HHHHhhh--------------------------hHHHHHHHHh
Confidence 2211111111111100000 0000001110 0000000 0000112255
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhccCC-------
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI-ERDGDFNKVVKLYERCLIACANY------- 389 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~-~~~gd~~~a~~lyeraL~~~~~~------- 389 (1169)
..+..++.+.+++++|...|...|.| +|+++.-+..|...+ .-.+..+....+|.+.-...|.+
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp 294 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP 294 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc
Confidence 66678899999999999999999984 555554444443332 12223333335666533332211
Q ss_pred ------HHHHHHHHHHH---HHcC-------------ChHHHHHHHHHHHHHhh------------------ccChHHHH
Q 001060 390 ------PEYWIRYVLCM---EASG-------------SMDLAHNALARATHVFV------------------KRLPEIHL 429 (1169)
Q Consensus 390 ------~e~W~~~a~~l---~~~g-------------~~e~A~~vl~rAl~~~~------------------p~~~~l~~ 429 (1169)
.++-..+..|+ .+.| +... ..++++.+.-+. |-...+|.
T Consensus 295 lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 295 LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 12222222222 2222 1111 124444333221 01123443
Q ss_pred H--HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHH
Q 001060 430 F--AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 507 (1169)
Q Consensus 430 ~--~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a 507 (1169)
. +++-....|+++.|...++.+ +.-.|...+.++..+.+..-.|++++|-.+++.+.+.+..+ -.+-..++
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~A-IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD------R~INsKcA 446 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLA-IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD------RAINSKCA 446 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh------HHHHHHHH
Confidence 3 345556788888888888888 77788888888888888888888888888888888876321 11223577
Q ss_pred HHHHHHhCCHHHHHHHHHHHhh
Q 001060 508 RFLHLVSRNAEKARQILVDSLD 529 (1169)
Q Consensus 508 ~~~~~~~g~~e~Ar~i~~kAl~ 529 (1169)
.+..+ .+.+++|.++..+--.
T Consensus 447 KYmLr-An~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 447 KYMLR-ANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHH-ccccHHHHHHHHHhhh
Confidence 77776 7778888888765544
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.28 E-value=4.3e-09 Score=126.34 Aligned_cols=361 Identities=12% Similarity=0.051 Sum_probs=199.6
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE 159 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~e 159 (1169)
....++..|+.+++.+|.|++.|..|++.|... |++..|.++|.++..+.|++.-.-++-+-++...|++.++...++
T Consensus 577 n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~s--Gry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPES--GRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhc--CceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 466889999999999999999999999999996 599999999999999999998888888999999999999999998
Q ss_pred HHHhccCCC----HHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHhcC----CC-CCCHHHHHHHHHHHHHhhhHHHHHH
Q 001060 160 RAVQGVTYS----VDIWLHYCIFAIN--TYGDPETIRRLFERGLAYVG----TD-YLSFPLWDKYIEYEYMQQEWSRVAM 228 (1169)
Q Consensus 160 raL~~~P~s----~~lw~~y~~~~~~--~~~~~e~Ar~~~erAl~~~g----~d-~~s~~lw~~y~~~e~~~~~~~~a~~ 228 (1169)
..+...... .++--.+++.... ..|-..++...+++.++.+- .+ ..+...|..... ..+-
T Consensus 655 ~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd---------ac~~ 725 (1238)
T KOG1127|consen 655 LIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD---------ACYI 725 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH---------HHHH
Confidence 887765322 2333333333221 11222334444444443221 10 112223333222 1111
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcc
Q 001060 229 IYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLT 308 (1169)
Q Consensus 229 iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 308 (1169)
.++....+|..++..++. ++++....+. +.+ ...+..+.+..-..... .+ .+
T Consensus 726 f~q~e~~~vn~h~l~il~--~q~e~~~~l~---~~d-~l~Lg~~c~~~hlsl~~------------------~~----~~ 777 (1238)
T KOG1127|consen 726 FSQEEPSIVNMHYLIILS--KQLEKTGALK---KND-LLFLGYECGIAHLSLAI------------------HM----YP 777 (1238)
T ss_pred HHHhcccchHHHHHHHHH--HHHHhcccCc---chh-HHHHHHHHhhHHHHHhh------------------cc----ch
Confidence 111111122222211111 1121111100 000 00000000000000000 00 00
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Q 001060 309 EAEELEKYIAVREEMYKKA-KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA 387 (1169)
Q Consensus 309 ~~~~~~k~i~~~~~~y~~~-~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~ 387 (1169)
=......|+..-. ...++ .+-..+|.++.++|+ ++.++...|..++-. -..|++.-+...|-+.+...|
T Consensus 778 WyNLGinylr~f~-~l~et~~~~~~Ai~c~KkaV~--------L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep 847 (1238)
T KOG1127|consen 778 WYNLGINYLRYFL-LLGETMKDACTAIRCCKKAVS--------LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP 847 (1238)
T ss_pred HHHHhHHHHHHHH-HcCCcchhHHHHHHHHHHHHH--------HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc
Confidence 0000011110000 00011 123567778888887 677777777777655 222555555666666666666
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHH-----------------
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL----------------- 450 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~----------------- 450 (1169)
.+.-.|..++.+...+.+++-|..+|.++..+. |.+..-|+-.+.+.+..|++-++..+|..
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 666666666665555666666666666666655 55666666666666666655555444431
Q ss_pred ----------------------H---------hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 451 ----------------------V---------HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 451 ----------------------a---------~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
+ +..-+|++..++...+....+++.+..|..++.++|.+.
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglL 997 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLL 997 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 234477778888888888888888988888888887654
No 101
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.1e-11 Score=123.29 Aligned_cols=81 Identities=25% Similarity=0.359 Sum_probs=76.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+..+|-|.||+.++++++|+++|.+||.|.++- +.+++.||.+||||||.|.+.++|.+||.. ||+-++.-.|+||++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvy-lardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVY-LARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeE-EEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 568899999999999999999999999999985 588999999999999999999999999987 899999999999999
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 985
No 102
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.4e-10 Score=123.55 Aligned_cols=256 Identities=18% Similarity=0.231 Sum_probs=182.1
Q ss_pred hhHHHHHHHHHHHHHhC---CC----C--HHHHH-HHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC
Q 001060 115 DNIVKIRRVYDAFLAEF---PL----C--YGYWK-KYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG 184 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~---P~----~--~~~W~-~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~ 184 (1169)
+++.+|.......++.. |. | ..+|+ .++..++++|-+.+|++-|+..|...| .+|.+..+.+.+. ...
T Consensus 193 nDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~-rid 270 (478)
T KOG1129|consen 193 NDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQ-RID 270 (478)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHH-Hhc
Confidence 58888886666555432 21 2 23443 468899999999999999999999985 7888888888887 788
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHH
Q 001060 185 DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 264 (1169)
Q Consensus 185 ~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e 264 (1169)
.++.|..+|..+|+..+.+ ..+...-.+..+.+++.+.+.++|+++|+..+.+++.+-
T Consensus 271 QP~~AL~~~~~gld~fP~~---VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA------------------- 328 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFD---VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA------------------- 328 (478)
T ss_pred cHHHHHHHHhhhhhcCCch---hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee-------------------
Confidence 9999999999999976653 445555566667778889999999998876444322210
Q ss_pred HHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001060 265 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 344 (1169)
Q Consensus 265 ea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~ 344 (1169)
. |-..
T Consensus 329 ---------------------------------------------------c------------------------ia~~ 333 (478)
T KOG1129|consen 329 ---------------------------------------------------C------------------------IAVG 333 (478)
T ss_pred ---------------------------------------------------e------------------------eeec
Confidence 0 0000
Q ss_pred CcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh--c
Q 001060 345 YFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV--K 422 (1169)
Q Consensus 345 ~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~--p 422 (1169)
|| + .++++-|+..|+|.|..-..+++++..++.+..--+++|-++..|+||+.... .
T Consensus 334 yf-------------------Y--~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~ 392 (478)
T KOG1129|consen 334 YF-------------------Y--DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG 392 (478)
T ss_pred cc-------------------c--CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc
Confidence 01 0 23455567777777777777777777777776666777777777777776542 1
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 423 RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 423 ~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
...++|+.++.+....||+.-|..+|.-+ +..++++.+.+.+++.+..|.|+++.|+++|..|-...|
T Consensus 393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrla-L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 393 QAADVWYNLGFVAVTIGDFNLAKRCFRLA-LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhhhhhhccceeEEeccchHHHHHHHHHH-hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 24567777777777777777777777776 555777777777777777777777777777777776654
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.1e-09 Score=118.86 Aligned_cols=361 Identities=12% Similarity=0.066 Sum_probs=228.6
Q ss_pred CCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-------
Q 001060 77 SVPAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG------- 149 (1169)
Q Consensus 77 ~~~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~------- 149 (1169)
+.+.+..+++...+++++||....+|..++..+..+ |++++|+..|++.|+.+|+|..+...+++.+....
T Consensus 48 ~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l--g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~ 125 (539)
T KOG0548|consen 48 SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL--GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFT 125 (539)
T ss_pred HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc--ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhcc
Confidence 345577889999999999999999999999998886 59999999999999999999999888888772220
Q ss_pred ----------C-------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHH--HHHHHHHHHh--cCCCC----
Q 001060 150 ----------S-------MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETI--RRLFERGLAY--VGTDY---- 204 (1169)
Q Consensus 150 ----------~-------~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~A--r~~~erAl~~--~g~d~---- 204 (1169)
+ .+.+.......++..|.++.+.+. -..++...+..-.+ ...+...... .+..+
T Consensus 126 ~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~ 204 (539)
T KOG0548|consen 126 KPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQE 204 (539)
T ss_pred CcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc-cHHHHHHHHHHhcCccccccccccccCCCCCCccccc
Confidence 0 111222222333334444433333 11111111100000 0000000000 00000
Q ss_pred ------CCHHH-----------HHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhc-CCCccccCHHHH
Q 001060 205 ------LSFPL-----------WDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAAS-RPLSELRTAEEV 266 (1169)
Q Consensus 205 ------~s~~l-----------w~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~eea 266 (1169)
..... ....+.-..+...+..+.+.|..++++. ..+..+.+....+... .-...+...+.+
T Consensus 205 ~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a 283 (539)
T KOG0548|consen 205 HNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKA 283 (539)
T ss_pred CCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHH
Confidence 00000 0011111111245677778888887775 4443333322211110 000000011111
Q ss_pred HHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 001060 267 DAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYF 346 (1169)
Q Consensus 267 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~ 346 (1169)
.. .- -....+...+.+.+...+..|.+.+.++.++..|+++|..
T Consensus 284 ~E-----------------------------~g----re~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte--- 327 (539)
T KOG0548|consen 284 VE-----------------------------VG----RELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE--- 327 (539)
T ss_pred HH-----------------------------Hh----HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh---
Confidence 00 00 0001122233445555677888889999999999998762
Q ss_pred ccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 347 HVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 347 ~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
|.. -+.+.+....++++...++..-..|.-.+--..-+.-+.+.|++..|+..|.+||... |++..
T Consensus 328 ~Rt-------------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 328 HRT-------------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred hcC-------------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 222 2334455667778888888777777665555555777778899999999999999988 99999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
+|...|.++.+.|++..|++-.+++ ++++|.....|++-+.++.-+.++++|...|.++++.+|.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~-ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKC-IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 9999999999999999999999997 8999999999999999999999999999999999999864
No 104
>PLN02789 farnesyltranstransferase
Probab=99.27 E-value=1.9e-09 Score=122.17 Aligned_cols=220 Identities=11% Similarity=0.040 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhccCC
Q 001060 311 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACANY 389 (1169)
Q Consensus 311 ~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~g-d~~~a~~lyeraL~~~~~~ 389 (1169)
+...+.+.....++...+..++|+..++++|. ++|.+..+|......+...+ ++++++..+++++..+|.+
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~--------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn 105 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIR--------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN 105 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc
Confidence 34445666667788888899999999999999 89999999999988888887 6799999999999999999
Q ss_pred HHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSM--DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 467 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~--e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 467 (1169)
..+|...+.++.+.+.. +++..++++++++. |++..+|...+.++...|+++++++.+.++ ++++|.+..+|..++
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~-I~~d~~N~sAW~~R~ 183 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQL-LEEDVRNNSAWNQRY 183 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHCCCchhHHHHHH
Confidence 99999999888887763 67889999999988 899999999999999999999999999998 889999999999999
Q ss_pred HHHHHc---CCH----HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHHHHHHHhhhcCCCHHH
Q 001060 468 NMERRL---GNL----EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLDHVQLSKPL 537 (1169)
Q Consensus 468 ~~e~r~---g~~----e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~e~Ar~i~~kAl~~~p~s~~l 537 (1169)
.+..+. |.+ ++...+..++|...|.+ ...|..+..++... .++..+|...+.+++...|.+...
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~a 257 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANPRN------ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFA 257 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCCCC------cCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHH
Confidence 887665 333 56788888999998754 34776665554431 234567999999999988988877
Q ss_pred HHHHHHhHh
Q 001060 538 LEALIHFES 546 (1169)
Q Consensus 538 ~~~~a~~E~ 546 (1169)
+..++++-.
T Consensus 258 l~~l~d~~~ 266 (320)
T PLN02789 258 LSDLLDLLC 266 (320)
T ss_pred HHHHHHHHH
Confidence 776666554
No 105
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=2.6e-11 Score=128.44 Aligned_cols=77 Identities=18% Similarity=0.345 Sum_probs=69.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|+|.|||+...+.||+.+|.+||+|.+|.|+.-++ | +||||||+|++.++|++|-+. +|..|.||+|.|..+.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--G-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--G-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--C-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 48999999999999999999999999999998755444 2 799999999999999999987 8999999999998765
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 173 a 173 (376)
T KOG0125|consen 173 A 173 (376)
T ss_pred h
Confidence 4
No 106
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.25 E-value=2.5e-11 Score=105.66 Aligned_cols=69 Identities=35% Similarity=0.566 Sum_probs=62.6
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1036 i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
|||+|||.++|+++|+++|++||.|..+.+.. + .+++.+|||||+|++.++|.+|++. ++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~-~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMR-N-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEE-E-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccc-c-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999876533 3 5678899999999999999999985 99999999885
No 107
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.22 E-value=3.7e-11 Score=127.49 Aligned_cols=77 Identities=25% Similarity=0.287 Sum_probs=69.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEeccC
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r~ 1112 (1169)
.++|||+|||+.+|+++|+++|+.||.|.+|.| ++++. .+|||||+|++.+++..||.++|..|+|+.|+|..++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I-~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEM-QSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 489999999999999999999999999999876 44432 46899999999999999998899999999999999875
Q ss_pred C
Q 001060 1113 N 1113 (1169)
Q Consensus 1113 ~ 1113 (1169)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 108
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.21 E-value=3.6e-11 Score=140.41 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=74.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
..+|||+|||.++++++|+++|++||+|.+|+| ++++.+|+++|||||+|.+.++|.+||+. ++..|.|+.|+|++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i-~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKL-VRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEE-EEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 479999999999999999999999999999986 66788899999999999999999999976 8999999999999887
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 109
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=4.3e-11 Score=132.04 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=68.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCH--HHHHHHHHh-CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI--SGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~--~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
.+.+||||||++.+++++|+.+|+.||.|++|.|. +.+| ||||||+|.+. .++.+||.. +|..+.||.|+|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp---RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV---RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe---cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 56899999999999999999999999999998763 5566 89999999987 789999987 8999999999999
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
.+++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8874
No 110
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=4.2e-08 Score=105.34 Aligned_cols=250 Identities=11% Similarity=0.056 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 399 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~ 399 (1169)
++.+|+..++.+.||+.-...+++|-+ ...+..-+...++.-++..|-+++|..+|.......-.-......+..+
T Consensus 75 LGnLfRsRGEvDRAIRiHQ~L~~spdl----T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~I 150 (389)
T COG2956 75 LGNLFRSRGEVDRAIRIHQTLLESPDL----TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNI 150 (389)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 356677777888888887777775432 2234445556667666788889999999988776555666788888888
Q ss_pred HHHcCChHHHHHHHHHHHHHhhcc----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 400 MEASGSMDLAHNALARATHVFVKR----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
|....++++|+++-++..++...+ ....+..+|..+....+.+.|+..+.++ .+.+|.+..+=+.+++++...|+
T Consensus 151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA-lqa~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA-LQADKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HhhCccceehhhhhhHHHHhccc
Confidence 888889999999998887765221 1234445566666678999999999999 77899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHH
Q 001060 476 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQID 555 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~ 555 (1169)
+..|.+.++++++.++. -++++...+...+.. .|+.++.+..+.++.+.++.......-+-..|...| ++
T Consensus 230 y~~AV~~~e~v~eQn~~-----yl~evl~~L~~~Y~~-lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G----~~ 299 (389)
T COG2956 230 YQKAVEALERVLEQNPE-----YLSEVLEMLYECYAQ-LGKPAEGLNFLRRAMETNTGADAELMLADLIELQEG----ID 299 (389)
T ss_pred hHHHHHHHHHHHHhChH-----HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhC----hH
Confidence 99999999999999863 346666666665444 999999999999999999876655543433443333 45
Q ss_pred HHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 001060 556 FLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLF 594 (1169)
Q Consensus 556 ~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~ 594 (1169)
.++..+-+-|...|+. ..+-+++++.-.-
T Consensus 300 ~Aq~~l~~Ql~r~Pt~----------~gf~rl~~~~l~d 328 (389)
T COG2956 300 AAQAYLTRQLRRKPTM----------RGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHhhCCcH----------HHHHHHHHhhhcc
Confidence 5666666666665542 3677788776543
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=4.7e-07 Score=104.40 Aligned_cols=441 Identities=15% Similarity=0.091 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH-HHHHHHHH
Q 001060 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD-IWLHYCIF 178 (1169)
Q Consensus 100 ~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~-lw~~y~~~ 178 (1169)
+.|+.|-.... ++++++|.+...++|...|++......-.-..++.+.|++|.++.+.-....-.++- +-..||.|
T Consensus 14 ~l~t~ln~~~~---~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGK---NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhcc---chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence 56666666443 579999999999999999999999888888899999999999776655432222222 45566666
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHH-HHHHHhcCCC
Q 001060 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSS-FKEFAASRPL 257 (1169)
Q Consensus 179 ~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~-~~~~~~~~~~ 257 (1169)
..+.+|+|...++ |.+.....+-..+.....+++++++|.+||+.++++....++.-... +..-...
T Consensus 91 ---rlnk~Dealk~~~------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--- 158 (652)
T KOG2376|consen 91 ---RLNKLDEALKTLK------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--- 158 (652)
T ss_pred ---HcccHHHHHHHHh------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---
Confidence 5688999999888 34555667888999999999999999999999998744433221111 1000000
Q ss_pred ccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 258 SELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 337 (1169)
Q Consensus 258 ~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~ 337 (1169)
-.+. ......+ .+ ..+.+ .+--..-++...++|.+|++.+
T Consensus 159 ------l~~~-----~~q~v~~-------------------v~------e~sye----l~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 159 ------LQVQ-----LLQSVPE-------------------VP------EDSYE----LLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred ------hhHH-----HHHhccC-------------------CC------cchHH----HHHHHHHHHHhcccHHHHHHHH
Confidence 0000 0000000 00 00111 1111223455667788888888
Q ss_pred HHhhccCCcccCCCCh---------hcHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CC-
Q 001060 338 ETAIRRPYFHVKPLSV---------TELENWHNYLD-FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GS- 405 (1169)
Q Consensus 338 e~al~r~~~~v~pl~~---------~~~~~W~~yl~-~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~-g~- 405 (1169)
+.+++- -...+.. .++...+--+. .+...|+.+++..+|..++..++.+..+-.-...-+... ++
T Consensus 199 ~kA~~~---~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 199 EKALRI---CREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred HHHHHH---HHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhcccc
Confidence 877650 0011110 01111111111 123457777788888888877765553322222111110 00
Q ss_pred --hH-------------HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH-HHHHHHHHH
Q 001060 406 --MD-------------LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-EAIIKHANM 469 (1169)
Q Consensus 406 --~e-------------~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-~~~~~~a~~ 469 (1169)
++ -+..++.+... .....++...+.+..-.+..+.++++..+. -...|... .+.+..+..
T Consensus 276 ~~~d~~~l~~k~~~~~~l~~~~l~~Ls~---~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l-p~~~p~~~~~~ll~~~t~ 351 (652)
T KOG2376|consen 276 NYFDGDLLKSKKSQVFKLAEFLLSKLSK---KQKQAIYRNNALLALFTNKMDQVRELSASL-PGMSPESLFPILLQEATK 351 (652)
T ss_pred ccCchHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHhC-CccCchHHHHHHHHHHHH
Confidence 01 01111111111 112234444444444445555666655543 22233322 233333333
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh-------cCCCHHHHHHHH
Q 001060 470 ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH-------VQLSKPLLEALI 542 (1169)
Q Consensus 470 e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~-------~p~s~~l~~~~a 542 (1169)
. +.....++..++...-+.+|.+ ...+.+..+.+... .|+++.|.+++...++. ....+.+.-...
T Consensus 352 ~-~~~~~~ka~e~L~~~~~~~p~~-----s~~v~L~~aQl~is-~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv 424 (652)
T KOG2376|consen 352 V-REKKHKKAIELLLQFADGHPEK-----SKVVLLLRAQLKIS-QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIV 424 (652)
T ss_pred H-HHHHHhhhHHHHHHHhccCCch-----hHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHH
Confidence 2 2235677777777777766532 12344445555555 89999999999944421 122222222222
Q ss_pred HhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 543 HFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 543 ~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
.+....++ .+.+..++..++..-.... ..+ ..-..+|....+|+..+|+.+...++++...+.+++.
T Consensus 425 ~l~~~~~~---~~~a~~vl~~Ai~~~~~~~-t~s-~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 425 ALYYKIKD---NDSASAVLDSAIKWWRKQQ-TGS-IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred HHHHhccC---CccHHHHHHHHHHHHHHhc-ccc-hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 22222222 1234455555544321111 011 3445688889999999999999999999998877653
No 112
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=5e-08 Score=114.08 Aligned_cols=314 Identities=12% Similarity=0.013 Sum_probs=173.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHH
Q 001060 95 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDI 171 (1169)
Q Consensus 95 nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~l 171 (1169)
||+..-+|..++.++... ++.+.+.+.|.+++...|.+ .+.+...+......|++++|.+++++++..+|.+...
T Consensus 2 dp~~~~a~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLG--GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 677777888888777664 36666677777777776644 4455556667777788888888888888888877766
Q ss_pred HHH-HHHHHHh-hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 001060 172 WLH-YCIFAIN-TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFK 249 (1169)
Q Consensus 172 w~~-y~~~~~~-~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~ 249 (1169)
|.. +..+... ..+..+.+.+.++. ..+.++.....+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~---------------------------------- 122 (355)
T cd05804 80 LKLHLGAFGLGDFSGMRDHVARVLPL---WAPENPDYWYLLGMLAF---------------------------------- 122 (355)
T ss_pred HHHhHHHHHhcccccCchhHHHHHhc---cCcCCCCcHHHHHHHHH----------------------------------
Confidence 652 1111110 11222233332222 11222222112222222
Q ss_pred HHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHH
Q 001060 250 EFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKE 329 (1169)
Q Consensus 250 ~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~ 329 (1169)
++...++
T Consensus 123 -------------------------------------------------------------------------~~~~~G~ 129 (355)
T cd05804 123 -------------------------------------------------------------------------GLEEAGQ 129 (355)
T ss_pred -------------------------------------------------------------------------HHHHcCC
Confidence 3334444
Q ss_pred HHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHcCC
Q 001060 330 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP----EYWIRYVLCMEASGS 405 (1169)
Q Consensus 330 ~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~----e~W~~~a~~l~~~g~ 405 (1169)
+++++..|++++. +.|.+...++.++..+...|++++++.+|++++...+..+ ..|..++.++...|+
T Consensus 130 ~~~A~~~~~~al~--------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 130 YDRAEEAARRALE--------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHHHHHHHHh--------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 5555555555555 4455555666666666777777777777777777655332 356677777777888
Q ss_pred hHHHHHHHHHHHHHhhccChHHHH----HHHHHHHHcCCHHHHHHH---HHHHhhhcCCC--hHHHHHHHHHHHHHcCCH
Q 001060 406 MDLAHNALARATHVFVKRLPEIHL----FAARFKEQNGDIDGARAA---YQLVHTETSPG--LLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 406 ~e~A~~vl~rAl~~~~p~~~~l~~----~~a~~~e~~g~~~~A~~~---~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~ 476 (1169)
+++|+.+|++++...+........ .........|....+... .... ....+. .......++......|+.
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYA-AWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHH-HhhcCcccchHHHHHHHHHHhcCCCH
Confidence 888888887776433101111111 111112223322222222 1111 111111 222334566677778889
Q ss_pred HHHHHHHHHHHHhhhC---CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 477 EDAFSLYEQAIAIEKG---KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~~---~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
++|..+++........ .........+.+..+..++. .|+.++|+..+..++..
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~-~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA-EGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 9999999887765432 11001112233444555555 99999999999999854
No 113
>PLN02789 farnesyltranstransferase
Probab=99.17 E-value=9.8e-09 Score=116.45 Aligned_cols=199 Identities=12% Similarity=0.054 Sum_probs=158.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCH-
Q 001060 364 DFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDI- 441 (1169)
Q Consensus 364 ~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g-~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~- 441 (1169)
..+...+..++|+.++.++|..+|.+..+|...+.++...+ ++++++..++++++.+ |++..+|...+.+..+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 34456678899999999999999999999999999999888 6799999999999988 89999999999888888863
Q ss_pred -HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---CC-
Q 001060 442 -DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS---RN- 516 (1169)
Q Consensus 442 -~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~---g~- 516 (1169)
++++.+++++ ++++|.+..+|..++.+....|++++++..++++|+.++.+ ...|.+.+..+.. . |+
T Consensus 124 ~~~el~~~~ka-l~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~-~~~l~~~ 195 (320)
T PLN02789 124 ANKELEFTRKI-LSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITR-SPLLGGL 195 (320)
T ss_pred hHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHh-ccccccc
Confidence 6789999998 78999999999999999999999999999999999998643 4577776655443 3 22
Q ss_pred ---HHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCCh-hHHHHHHHHHHHHhhcCCCC
Q 001060 517 ---AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP-KQIDFLEQLVDKFLMSNSDS 571 (1169)
Q Consensus 517 ---~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~-~~~~~~r~l~eral~~~~~~ 571 (1169)
.+++.....++|+.+|++...|..+..+....+.. .....+...+++++...+.+
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc
Confidence 35788888999999999999997665555443221 01122455566666654443
No 114
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.16 E-value=1.1e-10 Score=121.64 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=68.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
.+++|||+||++.+|+++|+++|+.||.|.+|+| +++. ..+|||||+|++.+++..|+.++|..|.|+.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I-~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEI-IRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEE-ecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4699999999999999999999999999999875 4443 45689999999999999999999999999999998754
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.16 E-value=3e-09 Score=116.64 Aligned_cols=177 Identities=14% Similarity=0.049 Sum_probs=139.2
Q ss_pred CCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 350 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 350 pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~---e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
|.++...+.+...+..+...|+++.|+..|++++...|.++ +.|+.++.++...|++++|+..|+++++.+ |+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~ 105 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPD 105 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCc
Confidence 46677788899999988999999999999999999998765 688999999999999999999999999988 66665
Q ss_pred ---HHHHHHHHHHHc--------CCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcCCHHH
Q 001060 427 ---IHLFAARFKEQN--------GDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLGNLED 478 (1169)
Q Consensus 427 ---l~~~~a~~~e~~--------g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g~~e~ 478 (1169)
.++..+.++... |++++|+..|+++ ++.+|++...+ +..+.++.+.|++.+
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQEL-IRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH-HHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 677778777665 7899999999998 77899876554 244566667777777
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
|+..|++++...|+. +..+.+|..++..+.. .|++++|..+++.....+|
T Consensus 185 A~~~~~~al~~~p~~---~~~~~a~~~l~~~~~~-lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 185 AINRFETVVENYPDT---PATEEALARLVEAYLK-LGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHCCCC---cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 777777777776532 3345566667766665 7777777777776665554
No 116
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.14 E-value=1.5e-10 Score=100.86 Aligned_cols=69 Identities=26% Similarity=0.521 Sum_probs=60.3
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1036 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1036 i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
|||+|||+++++++|+++|+.||.|..+.+ ..++. |+++|+|||+|.+.++|.+|+.. ++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~-~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRL-IKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEE-EESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEE-Eeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999764 44554 88999999999999999999998 67999999875
No 117
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.2e-10 Score=107.73 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=77.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..++.|||.++...+++++|.+.|..||+|+.+.+.+ ++.||-.||||.|+|++.+.|++||.. ||..|.|+.|.|++
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNL-DRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNL-DRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeecc-ccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3689999999999999999999999999999988655 777999999999999999999999988 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
+..+.+
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 876543
No 118
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.14 E-value=1.6e-10 Score=138.48 Aligned_cols=81 Identities=19% Similarity=0.369 Sum_probs=74.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++++++|+++|+.||.|++++| ++++.+|++||||||+|++.++|.+||+. |++.|+|+.|+|.++.
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl-~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEE-EecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 479999999999999999999999999999875 56777889999999999999999999987 8999999999999887
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
+.+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 119
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=7.7e-12 Score=121.64 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=73.9
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
-.++.-|||||||++.|+.||-.+|++||+|..|. ++|++.||+++||||+.|+|..+..-|+.. ||+.|.||.|+|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin-LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN-LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEE-EEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 44678999999999999999999999999999986 589999999999999999999999999976 8999999999997
Q ss_pred ec
Q 001060 1109 ER 1110 (1169)
Q Consensus 1109 ~~ 1110 (1169)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 54
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.7e-09 Score=124.20 Aligned_cols=258 Identities=14% Similarity=0.099 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 402 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~ 402 (1169)
.+.+.+...+|.-.||.+|+ .+|...++|..++...-++++-..++..++|||+++|.+.++.+.+|..+..
T Consensus 294 ~lm~nG~L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHhcCCchHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 45567778999999999999 7999999999999887778888899999999999999999999999999988
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC---------CHHHHHHHHHHHhhhcCC--ChHHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG---------DIDGARAAYQLVHTETSP--GLLEAIIKHANMER 471 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g---------~~~~A~~~~~~a~~~~~P--~~~~~~~~~a~~e~ 471 (1169)
.|.-..|...|.+=|...+ +..|+..+.-....+ .+....++|-.+ ....| .++++...++.++.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p---~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLea-a~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKP---KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEA-ARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhhHHHHHHHHHHHHHhCc---cchhccccCccccccCCcCCCCHHHHHHHHHHHHHH-HHhCCCCCChhHHhhhHHHHh
Confidence 8877888888888776552 233333322122211 123344556665 34466 68899999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCCh
Q 001060 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 551 (1169)
Q Consensus 472 r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~ 551 (1169)
-.++|++|+.||+.||...|++ ..+|..|+-.+.- ..+.++|...|.+||++.|.-...+..++.=-+.+|.
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~- 513 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA- 513 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-
Confidence 9999999999999999998753 5699999988765 6679999999999999999877777666554444444
Q ss_pred hHHHHHHHHHHHHhhc--CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001060 552 KQIDFLEQLVDKFLMS--NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 603 (1169)
Q Consensus 552 ~~~~~~r~l~eral~~--~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v 603 (1169)
.+.+-..|-.||.- .+.++-.. +.....||+..--++...+..+.+..+
T Consensus 514 --ykEA~~hlL~AL~mq~ks~~~~~~-~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 514 --YKEAVKHLLEALSMQRKSRNHNKA-PMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred --HHHHHHHHHHHHHhhhcccccccC-CcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 22233333334332 21111000 112567999999888888877744443
No 121
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=2.3e-09 Score=114.41 Aligned_cols=240 Identities=9% Similarity=-0.045 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE 391 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e 391 (1169)
-||| ...++.|...+-+.+|.+.|...|+. ..-++.+..+...+.+..++.+|+.+|...|...|.+..
T Consensus 223 wwWk--~Q~gkCylrLgm~r~AekqlqssL~q---------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT 291 (478)
T KOG1129|consen 223 WWWK--QQMGKCYLRLGMPRRAEKQLQSSLTQ---------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT 291 (478)
T ss_pred HHHH--HHHHHHHHHhcChhhhHHHHHHHhhc---------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence 3444 34567888888888888889888873 223466777778888899999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 471 (1169)
+....+.+++..+++++|.++|+++++.+ +.+.+..--.+.-+.-.++.+.|+..|.++ +.+.-.+++++.+.+.+..
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRi-LqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRI-LQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHH-HHhcCCChHHHhhHHHHHH
Confidence 99999999999999999999999999988 665554333333334467889999999998 7788888999999999888
Q ss_pred HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCCh
Q 001060 472 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 551 (1169)
Q Consensus 472 r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~ 551 (1169)
-.+.+|-+...|++|+...... ....++|.+++.+... .||+.-|...|+-||..++++..-+.+++.++..-|+
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~---~~aaDvWYNlg~vaV~-iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~- 444 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQP---GQAADVWYNLGFVAVT-IGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD- 444 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCc---chhhhhhhccceeEEe-ccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-
Confidence 8899999999999999876422 2346799999888666 9999999999999999999999999999999999887
Q ss_pred hHHHHHHHHHHHHhhcCCCC
Q 001060 552 KQIDFLEQLVDKFLMSNSDS 571 (1169)
Q Consensus 552 ~~~~~~r~l~eral~~~~~~ 571 (1169)
|+.+|+++..+-...|+-
T Consensus 445 --i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 445 --ILGARSLLNAAKSVMPDM 462 (478)
T ss_pred --hHHHHHHHHHhhhhCccc
Confidence 888999999887766543
No 122
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=6.1e-07 Score=104.56 Aligned_cols=411 Identities=11% Similarity=0.096 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 100 ~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
..+-..+..++. +.+.+..++.+..|+.||...+-.-..+......|+.++|-+...++|...+.|.--|.-|+-+.
T Consensus 9 ~lF~~~lk~yE~---kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCYET---KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHH---HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 344456666775 68999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHH-HHhcCCCc
Q 001060 180 INTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKE-FAASRPLS 258 (1169)
Q Consensus 180 ~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~-~~~~~~~~ 258 (1169)
. ...++++|++.|..||.. +.....||....-+-..+++++.....-.+.|+..+.+...|+..... +....-
T Consensus 86 R-~dK~Y~eaiKcy~nAl~~---~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y-- 159 (700)
T KOG1156|consen 86 R-SDKKYDEAIKCYRNALKI---EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY-- 159 (700)
T ss_pred h-hhhhHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence 8 678899999999999993 444788999999888888999999888888998755544333222111 111000
Q ss_pred cccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 259 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 338 (1169)
Q Consensus 259 ~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e 338 (1169)
..+ ...+.++.+ +.. +.. +..+.+..+ .+..+..+..+.+.++.+.+.+.
T Consensus 160 -----~~A-------~~il~ef~~--t~~-------------~~~--s~~~~e~se-~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 160 -----KMA-------LEILEEFEK--TQN-------------TSP--SKEDYEHSE-LLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred -----HHH-------HHHHHHHHH--hhc-------------cCC--CHHHHHHHH-HHHHHHHHHHHcccHHHHHHHHH
Confidence 001 001111111 000 000 001111111 12222223344444444444332
Q ss_pred HhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHH-HcCChHHHHHHHHHHH
Q 001060 339 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME-ASGSMDLAHNALARAT 417 (1169)
Q Consensus 339 ~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~-~~g~~e~A~~vl~rAl 417 (1169)
+.=+ ..-..+..-..-++++++.+++++|..+|.+.|+.+|++.+.+..+-.++. -.+..+.-..+|.+.-
T Consensus 210 ~~e~--------~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 210 DNEK--------QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred hhhh--------HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 2111 111223333445778889999999999999999999999988888877774 2333333335666555
Q ss_pred HHhhccChHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhh--
Q 001060 418 HVFVKRLPEIHLFAARFKEQNGDIDG-ARAAYQLVHTETSPGLLEAIIKHANMERRLGN---LEDAFSLYEQAIAIEK-- 491 (1169)
Q Consensus 418 ~~~~p~~~~l~~~~a~~~e~~g~~~~-A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~---~e~A~~iy~~Al~~~~-- 491 (1169)
+.+ |...-+...-..++.- .++.. ..+++...+.+-.| .+...+..++..-.. +++-..-|...+.-..
T Consensus 282 ~~y-~r~e~p~Rlplsvl~~-eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 282 EKY-PRHECPRRLPLSVLNG-EELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred hcC-cccccchhccHHHhCc-chhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCC
Confidence 544 3222111111111111 12212 12222222111112 122222222211100 1122222222222110
Q ss_pred -----CCCccCchHHHHHHH--HHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHH
Q 001060 492 -----GKEHSQTLPMLYAQY--SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKF 564 (1169)
Q Consensus 492 -----~~~~~~~~~~l~~~~--a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~era 564 (1169)
++.. +-...+|..| +.-.. ..|+++.|...+..|+.+.|+-..++..=+.+-.-.|+ ++.+-..++++
T Consensus 357 ~~~D~~~~E-~PttllWt~y~laqh~D-~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~---l~eAa~~l~ea 431 (700)
T KOG1156|consen 357 NFLDDGKQE-PPTTLLWTLYFLAQHYD-KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGL---LDEAAAWLDEA 431 (700)
T ss_pred CcccccccC-CchHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Confidence 0000 1123455433 22223 38899999999999999999888887666666665565 55566666666
Q ss_pred hhc
Q 001060 565 LMS 567 (1169)
Q Consensus 565 l~~ 567 (1169)
-..
T Consensus 432 ~el 434 (700)
T KOG1156|consen 432 QEL 434 (700)
T ss_pred Hhc
Confidence 543
No 123
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=4.4e-10 Score=116.28 Aligned_cols=77 Identities=30% Similarity=0.418 Sum_probs=69.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||||++..+|+++|++.|+.||.|.+|+|+- -+||+||.|++.|+|..||.. |+.+|+|+.|++.+-
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-------~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-------DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-------ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 579999999999999999999999999999988632 358999999999999999976 999999999999998
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+....
T Consensus 236 Ke~~~ 240 (321)
T KOG0148|consen 236 KEGDD 240 (321)
T ss_pred ccCCC
Confidence 87544
No 124
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=6.1e-11 Score=121.63 Aligned_cols=85 Identities=28% Similarity=0.509 Sum_probs=79.6
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..+|+.|||-.||.+..+.+|-++|-.||.|.+.+|++ |+.|+++||||||.|++..++++||.+ ||+.|+-++|+|.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv-DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV-DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee-hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 44789999999999999999999999999999999866 788999999999999999999999988 9999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
.+|++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 9999753
No 125
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.11 E-value=1.9e-10 Score=137.81 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=72.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++++++|+++|++||.|++|+| ++++.+|+++|||||+|.+.++|.+||+. +|..|+||.|+|...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I-~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINM-SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEE-eecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3479999999999999999999999999999876 56888999999999999999999999976 899999999999854
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=2.7e-08 Score=103.72 Aligned_cols=190 Identities=16% Similarity=0.161 Sum_probs=165.9
Q ss_pred ChHHHHHHHHHHHHhccC---CHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHH
Q 001060 371 DFNKVVKLYERCLIACAN---YPEYWIRYVLCM---EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGA 444 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~---~~e~W~~~a~~l---~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A 444 (1169)
+.++++.++...+...+. -.+.|.-|=+.+ ...|..+.|..++.+....+ |++..+-.+.|.+++..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 566777777777766443 356776665443 34688999999999999989 99999999999999999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL 524 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~ 524 (1169)
.++|+.+ ++-+|.+.-++.+...+...+|+--+|++.+...++.+..+ +++|..++.++.. .|++++|.-+|
T Consensus 106 ~e~y~~l-L~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D------~EAW~eLaeiY~~-~~~f~kA~fCl 177 (289)
T KOG3060|consen 106 IEYYESL-LEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND------QEAWHELAEIYLS-EGDFEKAAFCL 177 (289)
T ss_pred HHHHHHH-hccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHh-HhHHHHHHHHH
Confidence 9999998 67799999999999999999999999999999999999643 7899999999776 99999999999
Q ss_pred HHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001060 525 VDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 569 (1169)
Q Consensus 525 ~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~ 569 (1169)
+..+-+.|.+..++..|+.+...+|..+++..+|+.|++++..++
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999999988888888999999999999765
No 127
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=1.9e-08 Score=118.99 Aligned_cols=260 Identities=14% Similarity=0.123 Sum_probs=165.1
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhc-
Q 001060 130 EFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG--------VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV- 200 (1169)
Q Consensus 130 ~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~--------~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~- 200 (1169)
.+|.-...-..++..+...|++++|+.+|++||.. +|.=..+...++.+++ ..+++++|..+|++||+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Confidence 35666666777899999999999999999999998 5433344444777777 7889999999999999752
Q ss_pred ---C-CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhC
Q 001060 201 ---G-TDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA 276 (1169)
Q Consensus 201 ---g-~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~ 276 (1169)
| +|+....+...+...+...|++++|...+++++++-.. .+.
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~----------~~~------------------------ 318 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK----------LLG------------------------ 318 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH----------hhc------------------------
Confidence 2 44444555666555666789999999999988765322 000
Q ss_pred CCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcH
Q 001060 277 PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTEL 356 (1169)
Q Consensus 277 ~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~ 356 (1169)
...+.+...+.-...++...+++++++..|.++++.
T Consensus 319 -------------------------------~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i------------- 354 (508)
T KOG1840|consen 319 -------------------------------ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI------------- 354 (508)
T ss_pred -------------------------------cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-------------
Confidence 001111223333334555556666666555554441
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc----cC---hHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACA-NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK----RL---PEIH 428 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~-~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p----~~---~~l~ 428 (1169)
|.+++...- .-..+...++.++...|++++|.+.|++|+++... .. ....
T Consensus 355 ----------------------~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 355 ----------------------YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred ----------------------HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 222221111 23456667777777777777777777777766511 11 1222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH------hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 429 LFAARFKEQNGDIDGARAAYQLV------HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 429 ~~~a~~~e~~g~~~~A~~~~~~a------~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
..+|..+.+.+.+.+|..+|.++ +-.-.|+....+.+++.++.++|++++|+.+-++++...
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 23344446666666666666654 222356667779999999999999999999999888543
No 128
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=5.2e-07 Score=104.08 Aligned_cols=437 Identities=11% Similarity=0.071 Sum_probs=248.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
++.+.++....+.+...|+|.++..--.-.+-+ .+.+++|.++.++-....-.+ .+.+.-+-++.+++..|+|.+.+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq--~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ--LDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh--hhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHH
Confidence 557889999999999999999998844444444 357888875544433322222 23367777889999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~ 238 (1169)
+ .+ .+.+..+...+++.+. .++++++|..+|+..++..-.+. ...+-..++. .+.-..+. +.++.-..|.
T Consensus 103 ~-~~--~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~-d~~~r~nl~a----~~a~l~~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 103 K-GL--DRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQ-DEERRANLLA----VAAALQVQ-LLQSVPEVPE 172 (652)
T ss_pred h-cc--cccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchH-HHHHHHHHHH----HHHhhhHH-HHHhccCCCc
Confidence 8 44 3456778888999988 89999999999999988433221 1122111111 11111122 3444445577
Q ss_pred hhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHH----hhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 239 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV----AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~----~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
..++.+|+..+.++....+.. |.++.... ...+.+.... .|++ .+.+.
T Consensus 173 ~syel~yN~Ac~~i~~gky~q------A~elL~kA~~~~~e~l~~~d~~------------eEei----------e~el~ 224 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQ------AIELLEKALRICREKLEDEDTN------------EEEI----------EEELN 224 (652)
T ss_pred chHHHHHHHHHHHHhcccHHH------HHHHHHHHHHHHHHhhcccccc------------hhhH----------HHHHH
Confidence 789999999888876544332 22111111 1111111000 0000 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHH-HHHHHHHcCChH--HHHHHHHH--------HH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN-YLDFIERDGDFN--KVVKLYER--------CL 383 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~-yl~~~~~~gd~~--~a~~lyer--------aL 383 (1169)
-+...+.-++...++-+++...|...|++ .|.|.....+..+ ++.+ ....++- .++..++. ++
T Consensus 225 ~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~-----~~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l 298 (652)
T KOG2376|consen 225 PIRVQLAYVLQLQGQTAEASSIYVDIIKR-----NPADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLL 298 (652)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHh-----cCCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHH
Confidence 12222344677888999999999999985 3444332322222 2222 1111111 12222222 11
Q ss_pred Hhcc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHH----HHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001060 384 IACA--NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL----FAARFKEQNGDIDGARAAYQLVHTETSP 457 (1169)
Q Consensus 384 ~~~~--~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~----~~a~~~e~~g~~~~A~~~~~~a~~~~~P 457 (1169)
...- .-..|....+.+....+..+.+++...+ .++..|...+ ..+....+. ...+|..++... .+..|
T Consensus 299 ~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~----lp~~~p~~~~~~ll~~~t~~~~~-~~~ka~e~L~~~-~~~~p 372 (652)
T KOG2376|consen 299 SKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS----LPGMSPESLFPILLQEATKVREK-KHKKAIELLLQF-ADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh----CCccCchHHHHHHHHHHHHHHHH-HHhhhHHHHHHH-hccCC
Confidence 1111 1112344444444445555555544433 3334433222 222222222 567778888775 56678
Q ss_pred Ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCC-ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc----
Q 001060 458 GL-LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE-HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV---- 531 (1169)
Q Consensus 458 ~~-~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~-~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~---- 531 (1169)
.. ..+.+..+.+....|+++.|+.++...+..-...- .....|.+ +.++.+++...++.+.|..++..|+...
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~-V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT-VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH-HHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 76 66788889999999999999999994432111000 00112333 3444555554777888888888888853
Q ss_pred C---CCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 532 Q---LSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 532 p---~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
+ .-..+|...+.|++..|. .+.+.++++..+..++.+.
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~---~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGN---EEEASSLLEELVKFNPNDT 492 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCc---hHHHHHHHHHHHHhCCchH
Confidence 2 223566788999999887 4557778888888666543
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.09 E-value=2.8e-09 Score=113.08 Aligned_cols=123 Identities=14% Similarity=0.065 Sum_probs=113.3
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhCC--HHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVGS--MDKVV 155 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~-e~~~~~--~e~A~ 155 (1169)
.++...+..|+++|+.+|.|.++|..|+..+... +++++|..+|++++...|++..+|..++.. +...|+ +++|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~--g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR--NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4467889999999999999999999999999885 599999999999999999999999999996 467777 59999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~ 204 (1169)
++|+++|+.+|.+++.|..++..+. ..|++++|+..|+++++..+.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~-~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAF-MQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999888 89999999999999999887754
No 130
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=5.7e-07 Score=105.14 Aligned_cols=174 Identities=11% Similarity=-0.004 Sum_probs=117.7
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh----H
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP----E 426 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~----~ 426 (1169)
.++.....+..++..+...|++++++..+++++...|.+..++..++.++...|++++|+..|++++... +..+ .
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~-~~~~~~~~~ 187 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW-DCSSMLRGH 187 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc-CCCcchhHH
Confidence 4455555555666777899999999999999999999999999999999999999999999999999876 3222 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC--ChHHHHHHH---HHHHHHcCCHHHHHH---HHHHHHHhhhCCCccCc
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSP--GLLEAIIKH---ANMERRLGNLEDAFS---LYEQAIAIEKGKEHSQT 498 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P--~~~~~~~~~---a~~e~r~g~~e~A~~---iy~~Al~~~~~~~~~~~ 498 (1169)
.|..++.++...|++++|+.+|+++ ....| ......... .......|....+.. +........+. ..
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~----~~ 262 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTH-IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD----HG 262 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH-hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc----cc
Confidence 5667899999999999999999997 44444 222111011 111122233222222 22222111111 11
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 499 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 499 ~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
........++.+.. .|+.+.|..+++......
T Consensus 263 ~~~~~~~~a~~~~~-~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 263 LAFNDLHAALALAG-AGDKDALDKLLAALKGRA 294 (355)
T ss_pred chHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 22333456666555 889999999998887643
No 131
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=1.5e-07 Score=112.94 Aligned_cols=99 Identities=9% Similarity=-0.018 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 100 ~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
+.....+.++... |++++|...+++.-..-.+...+....|++++++|++++|..+|..+|..+|+|.+.+..|....
T Consensus 5 E~lLY~~~il~e~--g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 5 ELLLYKNSILEEA--GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 4445556666664 69999999999999999999999999999999999999999999999999999998888887776
Q ss_pred Hh----hcCCHHHHHHHHHHHHHhc
Q 001060 180 IN----TYGDPETIRRLFERGLAYV 200 (1169)
Q Consensus 180 ~~----~~~~~e~Ar~~~erAl~~~ 200 (1169)
.- ...+.+....+|+......
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y 107 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY 107 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC
Confidence 31 1124566666777655533
No 132
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.04 E-value=4.8e-08 Score=115.60 Aligned_cols=249 Identities=15% Similarity=0.163 Sum_probs=181.3
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA--------CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV- 421 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~--------~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~- 421 (1169)
.+|......+.++..+...|++++|+.++++||.. ++.-...-..+|.+|..++++++|..+|++|+.+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666777777888889999999999999999998 444445556689999999999999999999999874
Q ss_pred ---cc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-------hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001060 422 ---KR---LPEIHLFAARFKEQNGDIDGARAAYQLVH-------TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 488 (1169)
Q Consensus 422 ---p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~-------~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~ 488 (1169)
++ ...++..++.++...|++++|+.++++++ ....|.....+...+.++...+++++|+.+|.++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 22 34678888999999999999999888872 122344555678888888899999999999999998
Q ss_pred hhhC--CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc----C-----CCHHHHHHHHHhHhhCCChhHHHHH
Q 001060 489 IEKG--KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV----Q-----LSKPLLEALIHFESIQSSPKQIDFL 557 (1169)
Q Consensus 489 ~~~~--~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~----p-----~s~~l~~~~a~~E~~~~~~~~~~~~ 557 (1169)
+... ..+....+.++.+++.+++. .|++++|+++|++|+++. . ....+|.--..++.. .. +..+
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~-k~---~~~a 428 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL-KK---YEEA 428 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh-cc---cchH
Confidence 7541 11123456789999999887 999999999999999964 1 123455432223222 22 3335
Q ss_pred HHHHHHHhhc----CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001060 558 EQLVDKFLMS----NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 558 r~l~eral~~----~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
..+|++++.. +++.+ +-...+.....-.+..|+.+.+.++..+....
T Consensus 429 ~~l~~~~~~i~~~~g~~~~------~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 429 EQLFEEAKDIMKLCGPDHP------DVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHHHHhCCCCC------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5566555332 23333 12345666666778889988888888777644
No 133
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.03 E-value=4.8e-09 Score=111.22 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=114.7
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH-HHcCC--HHHHH
Q 001060 369 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK-EQNGD--IDGAR 445 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~-e~~g~--~~~A~ 445 (1169)
.++.++++..++++|..+|.+.+.|+.++.++...|++++|..+|++++.+. |+++.++..+|.++ ...|+ .++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4567889999999999999999999999999999999999999999999988 89999999999965 67777 59999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
.+|+++ ++++|++..+++.++..+.++|++++|+..|+++++..+..
T Consensus 131 ~~l~~a-l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 131 EMIDKA-LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHH-HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999998 88999999999999999999999999999999999998753
No 134
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.02 E-value=5.2e-09 Score=105.16 Aligned_cols=122 Identities=14% Similarity=-0.027 Sum_probs=99.6
Q ss_pred HHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 337 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 337 ~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
|+++|+ ++|.. |..++......|++++++..|++++...|.+.++|+.++.++...|++++|...|+++
T Consensus 16 ~~~al~--------~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 16 LKQLLS--------VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHH--------cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 667766 56553 5566666678888888888888888888888888888888888888888888888888
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 471 (1169)
+.+. |+++..|+.++.++...|++++|+..|.++ +++.|++...|...+....
T Consensus 85 l~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A-l~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 85 LMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTA-IKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHH
Confidence 8876 788888888888888888888888888887 7788888888877666553
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.02 E-value=7.9e-08 Score=119.86 Aligned_cols=187 Identities=12% Similarity=0.108 Sum_probs=125.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCC
Q 001060 127 FLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLS 206 (1169)
Q Consensus 127 ~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s 206 (1169)
+....|.+..+|..++..+...+++++|+.+++.++..+|.+..+|+..+.++. ..++...+.-+ +++...+.+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~--- 96 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQN--- 96 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccc---
Confidence 345789999999999999999999999999999999999999999998888666 55665555444 555433321
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhc
Q 001060 207 FPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKA 286 (1169)
Q Consensus 207 ~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~ 286 (1169)
.++..+.-+|.+++..+
T Consensus 97 --------------~~~~~ve~~~~~i~~~~------------------------------------------------- 113 (906)
T PRK14720 97 --------------LKWAIVEHICDKILLYG------------------------------------------------- 113 (906)
T ss_pred --------------cchhHHHHHHHHHHhhh-------------------------------------------------
Confidence 12222222222221111
Q ss_pred cccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHH
Q 001060 287 NEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 366 (1169)
Q Consensus 287 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~ 366 (1169)
.+..+.+.++.++
T Consensus 114 -------------------------------------------------------------------~~k~Al~~LA~~Y 126 (906)
T PRK14720 114 -------------------------------------------------------------------ENKLALRTLAEAY 126 (906)
T ss_pred -------------------------------------------------------------------hhhHHHHHHHHHH
Confidence 1122455666777
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
.+.|+.+++..+|++||..+|+++.+...||.+|... ++++|+..+.+|+.++- ..+++.+++.
T Consensus 127 dk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i---------------~~kq~~~~~e 190 (906)
T PRK14720 127 AKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI---------------KKKQYVGIEE 190 (906)
T ss_pred HHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH---------------hhhcchHHHH
Confidence 7778888888888888888888888888888777777 78888888877776531 2235555666
Q ss_pred HHHHHhhhcCCChHHHHHHH
Q 001060 447 AYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~ 466 (1169)
+.++. .+.+|++.+..+..
T Consensus 191 ~W~k~-~~~~~~d~d~f~~i 209 (906)
T PRK14720 191 IWSKL-VHYNSDDFDFFLRI 209 (906)
T ss_pred HHHHH-HhcCcccchHHHHH
Confidence 66665 45566655544433
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.01 E-value=2.4e-08 Score=123.92 Aligned_cols=138 Identities=10% Similarity=0.032 Sum_probs=131.0
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
.+...+..+.+++...+.|.++++..++++|+..+|.+..+++.++..|.+.+++++|+..+++++... |++...++.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 344578899999999999999999999999999999999999999999999999999999999999987 9999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
|.++.+.|++++|..+|+++ +..+|++..+|+.++..+...|+.++|...|++|++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~-~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERL-SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHhcchHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999998 557999999999999999999999999999999999874
No 137
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.01 E-value=2.3e-09 Score=117.26 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=70.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHh-cCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~-~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..+++||.|||+++.+.+|+++|. +.|+|..|.++. ...|+.||||.|||++++.+++|++. +.+.++||.|+|.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~--D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLF--DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeec--ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 347799999999999999999995 899999987544 44689999999999999999999988 89999999999987
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
.+.
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 764
No 138
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.5e-08 Score=111.83 Aligned_cols=276 Identities=13% Similarity=0.061 Sum_probs=194.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 193 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~ 193 (1169)
+.++..|.+.|..++..+|++..||-.-+..++..++|+.+.--.++.+.+.|....-...-.+... ..++..+|.+.|
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~-a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL-ALSDLIEAEEKL 140 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh-hhHHHHHHHHHh
Confidence 3589999999999999999999999999999999999999999999999987654432222222222 222233333332
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHH
Q 001060 194 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV 273 (1169)
Q Consensus 194 erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~ 273 (1169)
+ +.. . .....+...+++++...
T Consensus 141 ~-----------~~~---~--------~~~anal~~~~~~~~s~------------------------------------ 162 (486)
T KOG0550|consen 141 K-----------SKQ---A--------YKAANALPTLEKLAPSH------------------------------------ 162 (486)
T ss_pred h-----------hhh---h--------hHHhhhhhhhhcccccc------------------------------------
Confidence 2 000 0 01111111121111110
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh
Q 001060 274 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 353 (1169)
Q Consensus 274 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~ 353 (1169)
+......++......++...+.+.+++..--+.++ +++
T Consensus 163 ----------------------------------s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk--------ld~ 200 (486)
T KOG0550|consen 163 ----------------------------------SREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK--------LDA 200 (486)
T ss_pred ----------------------------------cCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh--------ccc
Confidence 00011111222223445555666666666555655 677
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP------------EYWIRYVLCMEASGSMDLAHNALARATHVFV 421 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~------------e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~ 421 (1169)
.+.+...--..++.-.++.+.++..|+++|...|.+. +.|..-+.-+.++|.+..|.++|..||.+.|
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 7776655555555566788889999999998888665 4777777777788999999999999999884
Q ss_pred c---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 422 K---RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 422 p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
. .+..+|...+....+.|+..+|+.-++.+ +++++..+..++..+.+..-++++++|.+-|++|++...
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~A-l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEA-LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 24567777888889999999999999998 899999999999999999999999999999999999874
No 139
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.97 E-value=1.3e-08 Score=102.35 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 001060 84 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQ 163 (1169)
Q Consensus 84 ~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~ 163 (1169)
-+..|+++++.+|.+ |..++..+... |++++|...|++++...|.+..+|..++.++.+.|++++|+..|++++.
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQE--GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 457899999999995 66677777664 6999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 164 GVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 164 ~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
..|.+.+.|+..+..+. ..|++++|+..|++++...+.+
T Consensus 87 l~p~~~~a~~~lg~~l~-~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 87 LDASHPEPVYQTGVCLK-MMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred cCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999888 8999999999999999966654
No 140
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.7e-09 Score=121.75 Aligned_cols=83 Identities=33% Similarity=0.440 Sum_probs=74.0
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhC------C-Ceeec
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS------P-IQLAG 1102 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~------~-~~i~g 1102 (1169)
+..+.+|||+|||+++|+++|.++|++||+|+++. ++.++.||+++|+|||.|.+..++..||.+- | +.|.|
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~-iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI-IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEE-EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 44679999999999999999999999999999985 5789999999999999999999999999762 3 78999
Q ss_pred eEEEEEeccCC
Q 001060 1103 RQVYIEERRPN 1113 (1169)
Q Consensus 1103 ~~l~V~~~r~~ 1113 (1169)
|.|+|..+-++
T Consensus 368 R~Lkv~~Av~R 378 (678)
T KOG0127|consen 368 RLLKVTLAVTR 378 (678)
T ss_pred cEEeeeeccch
Confidence 99999866543
No 141
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=1.5e-08 Score=119.20 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
...+.+++...+=..+|+..||+ +++|-..+.+|...|+..+|..+..+-++ .+.++-+|..+
T Consensus 401 q~~laell~slGitksAl~I~Er----------------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFER----------------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHh----------------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 33445566666666777777765 47899999999888988888887777776 67777788777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
++++... .+|++|.++....+..+...++....+++++.++.+.++.. .+++|.....|+.++.+..+++++
T Consensus 464 GDv~~d~-------s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~s-l~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDP-------SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERS-LEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccCh-------HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHH-hhcCccchhHHHhccHHHHHHhhh
Confidence 7766432 46777777665556667777787777889999999999998 789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001060 477 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 556 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~ 556 (1169)
..+.+.|.+++...|++ .+.|.+++..+.+ .++..+|+..+++|++.+..+..+|++|..+....+. .+-
T Consensus 536 q~av~aF~rcvtL~Pd~------~eaWnNls~ayi~-~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge---~ed 605 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDN------AEAWNNLSTAYIR-LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE---FED 605 (777)
T ss_pred HHHHHHHHHHhhcCCCc------hhhhhhhhHHHHH-HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc---HHH
Confidence 99999999999998753 6789999888777 9999999999999999999999999999999998887 444
Q ss_pred HHHHHHHHhh
Q 001060 557 LEQLVDKFLM 566 (1169)
Q Consensus 557 ~r~l~eral~ 566 (1169)
+.+++.+.+.
T Consensus 606 a~~A~~rll~ 615 (777)
T KOG1128|consen 606 AIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHH
Confidence 5556666544
No 142
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.95 E-value=2.2e-09 Score=133.27 Aligned_cols=77 Identities=23% Similarity=0.406 Sum_probs=70.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
+|||||||.++|+++|+++|++||.|.+|+| +++..+++++|||||+|.+.++|++||+. ++..|+|+.|+|.+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v-~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRV-CRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 7999999999999999999999999999875 66788899999999999999999999977 78889999999987643
No 143
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.95 E-value=2.4e-09 Score=129.66 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=74.4
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||..+++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.++|..|.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i-~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQC-IKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 446789999999999999999999999999999876 5677889999999999999999999999999999999999976
Q ss_pred cc
Q 001060 1110 RR 1111 (1169)
Q Consensus 1110 ~r 1111 (1169)
..
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 43
No 144
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.94 E-value=1.1e-08 Score=127.04 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=72.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+.+|||+||+.++|+++|+++|++||.|++++|.. + .+|+++|||||+|.+.++|.+||.. ++..|+|+.|.|..+
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~-d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML-D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE-C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 457899999999999999999999999999987643 4 6789999999999999999999976 899999999999987
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 653
No 145
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=3.6e-09 Score=108.42 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=76.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.++.|||-||..++++.-|.++|++||.|..|+| ++|-.|.++||||||...+.++|..||.. ||..+++|.|.|.++
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKv-irD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKV-IRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEE-EecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 4799999999999999999999999999999986 78888899999999999999999999977 899999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 764
No 146
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.9e-10 Score=111.47 Aligned_cols=82 Identities=26% Similarity=0.426 Sum_probs=74.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++||||+|..++++.-|...|-.||.|+.|.+.+ +..+++.||||||+|+..++|.+||.. |+.++-||.|+|..+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPl-DyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPL-DYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhccccc-chhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 458999999999999999999999999999987654 667889999999999999999999987 899999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8654
No 147
>smart00362 RRM_2 RNA recognition motif.
Probab=98.94 E-value=3.6e-09 Score=91.82 Aligned_cols=71 Identities=34% Similarity=0.564 Sum_probs=62.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+|||+|||..++.++|+++|++||.|..+.+. .+. +.++|+|||+|.+.+++.+|+.. ++..++|+.|+|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~-~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIP-KDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999997643 333 67889999999999999999987 6899999998873
No 148
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=4.8e-09 Score=107.56 Aligned_cols=85 Identities=21% Similarity=0.401 Sum_probs=79.1
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+...+.+.|.-||.++|+++||.+|+..|+|++|+ ++||+-+|++-|||||.|-++.+|++||.. ||..+..+.|+|.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScK-LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCK-LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeee-eeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 44568899999999999999999999999999998 599999999999999999999999999987 8999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
++||...
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9998653
No 149
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.9e-09 Score=111.58 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=76.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
-..+||+.|...++-++||+.|.+||+|.+++| |||..|+++||||||.|-..++|+.||.. ||.-|++|.|+-.++.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akv-irD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKV-IRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceE-eecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 368999999999999999999999999999996 89999999999999999999999999987 8999999999999887
Q ss_pred CCCC
Q 001060 1112 PNTG 1115 (1169)
Q Consensus 1112 ~~~~ 1115 (1169)
.++.
T Consensus 141 RKp~ 144 (321)
T KOG0148|consen 141 RKPS 144 (321)
T ss_pred cCcc
Confidence 6653
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=2.1e-07 Score=97.19 Aligned_cols=174 Identities=16% Similarity=0.040 Sum_probs=149.5
Q ss_pred HHHHHHHH---HHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 357 ENWHNYLD---FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 357 ~~W~~yl~---~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
+.|.-|=. .....|..+-|...+.+....+|.+..+-...|.+|+..|.+++|.++|++.++-. |.+..++-....
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlA 128 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLA 128 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHH
Confidence 45666533 23466888889999999999999999999999999999999999999999999866 778888888777
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001060 434 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 513 (1169)
Q Consensus 434 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~ 513 (1169)
+...+|+--+|++.+..- ++..+.+.++|..+++++...|+|++|.-||+..+-+.| ..|.++..|++.+|..
T Consensus 129 ilka~GK~l~aIk~ln~Y-L~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P------~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEY-LDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP------FNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHcCCcHHHHHHHHHH-HHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHH
Confidence 888888888999988885 788999999999999999999999999999999998874 4578889999999984
Q ss_pred hC--CHHHHHHHHHHHhhhcCCCHHHH
Q 001060 514 SR--NAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 514 ~g--~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
.| +++-||+.|.++|+++|.+..-|
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 44 68899999999999999665333
No 151
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=8.4e-08 Score=119.10 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=130.5
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 465 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 465 (1169)
.+++.++.+.++.++...|.+++|..++++++++. |++..+++.++..+.+.+.+++|+..++++ +...|++....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~-l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELY-FSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHH-hhcCCCCHHHHHH
Confidence 56778999999999999999999999999999988 999999999999999999999999999998 7889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
++.++..+|++++|+.+|++++...| ..+..|+.|+..+.. .|+.++|...|++|++...+-.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p------~~~~~~~~~a~~l~~-~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP------EFENGYVGWAQSLTR-RGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhCcch
Confidence 99999999999999999999999654 336799999999887 9999999999999999875544
No 152
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.89 E-value=4.7e-09 Score=125.94 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=64.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V 1107 (1169)
.+++|||+|||.++++++|+++|++||.|.+++| +++ .+|+++|||||+|.+.++|++||+. ++..|. |+.|.|
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl-~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRL-MMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEE-EEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 3589999999999999999999999999999875 445 7899999999999999999999987 777775 665544
No 153
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.89 E-value=5.1e-09 Score=128.71 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=72.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||..+|+++|+++|+.||.|+.+.| +++..+|+++|||||+|.+.++|..||.. +|+.|+|+.|.|..+.
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~-~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL-IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 478999999999999999999999999999875 56777899999999999999999999976 8999999999999876
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 374 ~ 374 (509)
T TIGR01642 374 V 374 (509)
T ss_pred c
Confidence 4
No 154
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=1.5e-06 Score=104.41 Aligned_cols=297 Identities=16% Similarity=0.191 Sum_probs=197.7
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----CCHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV-----GSMDK 153 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~-----~~~e~ 153 (1169)
+....+++.|+..-..-.+........++++.++| +.++|..+|..+|.++|+|..|+..|.....-. .+.+.
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg--~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLG--RKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHH
Confidence 45778999998888888887777789999999975 999999999999999999999999998877333 25677
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCC-H-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001060 154 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-P-ETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 231 (1169)
Q Consensus 154 A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~-~-e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~ 231 (1169)
...+|+..-..+|.+.-.-..-+.|.. |+ + ..+..++...|.. |. ..+.... +.+|.
T Consensus 96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~---g~~F~~~~~~yl~~~l~K-gv----PslF~~l-------------k~Ly~ 154 (517)
T PF12569_consen 96 LLELYDELAEKYPRSDAPRRLPLDFLE---GDEFKERLDEYLRPQLRK-GV----PSLFSNL-------------KPLYK 154 (517)
T ss_pred HHHHHHHHHHhCccccchhHhhcccCC---HHHHHHHHHHHHHHHHhc-CC----chHHHHH-------------HHHHc
Confidence 888888888888765433222222211 11 0 1112222222221 11 0111111 11110
Q ss_pred HHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001060 232 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 311 (1169)
Q Consensus 232 r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 311 (1169)
. + .....+-..+..
T Consensus 155 d----~-~K~~~i~~l~~~------------------------------------------------------------- 168 (517)
T PF12569_consen 155 D----P-EKAAIIESLVEE------------------------------------------------------------- 168 (517)
T ss_pred C----h-hHHHHHHHHHHH-------------------------------------------------------------
Confidence 0 0 000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCccc---CCCChhcHHHHHHH--HHHHHHcCChHHHHHHHHHHHHh
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIR-RPYFHV---KPLSVTELENWHNY--LDFIERDGDFNKVVKLYERCLIA 385 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~-r~~~~v---~pl~~~~~~~W~~y--l~~~~~~gd~~~a~~lyeraL~~ 385 (1169)
|...+. ...+.. ...++...-+|..| +..+...|++++|+...++||..
T Consensus 169 -------------------------~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 169 -------------------------YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred -------------------------HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 000000 000100 01234445678665 67888999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC--CC-hH--
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS--PG-LL-- 460 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~--P~-~~-- 460 (1169)
.|..+++++..|.+|...|++++|...++.|..+. ..+.-+....+.+..+.|++++|.+++..- ..-+ |. ++
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F-tr~~~~~~~~L~~ 301 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLF-TREDVDPLSNLND 301 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCCCcccCHHH
Confidence 99999999999999999999999999999999877 667778888999999999999999998874 3322 21 11
Q ss_pred --HHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 461 --EAI--IKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 461 --~~~--~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
-+| ...|..+.|.|++..|..-|......+.
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 135 4456677899999999999988888764
No 155
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.88 E-value=2.2e-07 Score=116.02 Aligned_cols=207 Identities=10% Similarity=0.016 Sum_probs=157.9
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh-----
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP----- 425 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~----- 425 (1169)
.++.+.++|..++..+...+++++++.+.+.++...|....+|+..+.++.+.++++.+.-+ +++.++ +...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~v 102 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIV 102 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHH
Confidence 57888999999999999999999999999999999999999999999988888887777655 666666 4444
Q ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 426 --------------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 426 --------------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
.+++.+|.++.+.|+.++|..+|+++ ++++|++..+..++|.++... ++++|+.++.+|+...-
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~-L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL-VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999998 899999999999999999888 99999999999988652
Q ss_pred CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh-----------------CCChhHH
Q 001060 492 GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI-----------------QSSPKQI 554 (1169)
Q Consensus 492 ~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~-----------------~~~~~~~ 554 (1169)
+ .+++..++.+|++.++.+|++..++......-.. ....++.
T Consensus 181 ~---------------------~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 181 K---------------------KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred h---------------------hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence 1 3345666666666666666665544322221111 1112234
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH
Q 001060 555 DFLEQLVDKFLMSNSDSPSTANAAEREELSCVFL 588 (1169)
Q Consensus 555 ~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l 588 (1169)
+....++.++|...+.+. ..+.+|-.-|.
T Consensus 240 ~~~i~iLK~iL~~~~~n~-----~a~~~l~~~y~ 268 (906)
T PRK14720 240 DEVIYILKKILEHDNKNN-----KAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHhcCCcch-----hhHHHHHHHHH
Confidence 556667788888776654 33555555554
No 156
>smart00360 RRM RNA recognition motif.
Probab=98.88 E-value=6.6e-09 Score=89.78 Aligned_cols=70 Identities=34% Similarity=0.559 Sum_probs=62.0
Q ss_pred EecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1038 VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1038 V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
|+|||..+++++|+++|++||.|..+.+. .++.+++++|+|||+|.+.++|..|+.. ++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~-~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLV-RDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEE-eCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999998753 4455688899999999999999999987 6899999998874
No 157
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.87 E-value=3.5e-09 Score=122.10 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=75.5
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
+.|||||+|+++++++|..+|+..|.|.++++ +.|+.||+.+||||++|.+.+++..|++. ||.+++||+|+|+++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~-v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRL-VYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeee-cccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999999999999999999999999884 78999999999999999999999999987 89999999999999876
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
+.
T Consensus 98 ~~ 99 (435)
T KOG0108|consen 98 RK 99 (435)
T ss_pred cc
Confidence 54
No 158
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.86 E-value=6e-08 Score=96.32 Aligned_cols=114 Identities=14% Similarity=0.209 Sum_probs=106.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001060 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 165 (1169)
Q Consensus 86 ~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 165 (1169)
+.|++++..+|.+.++-..++..+... +++++|...|++++..+|.+..+|..++.++.+.+++++|+.+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468899999999999988888888874 699999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001060 166 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 202 (1169)
Q Consensus 166 P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~ 202 (1169)
|.+.+.|+.++.++. ..|+.++|...|+++++..+.
T Consensus 82 p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 82 PDDPRPYFHAAECLL-ALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhccc
Confidence 999999999999888 889999999999999996654
No 159
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.85 E-value=7.3e-09 Score=125.45 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=72.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||..+|+++|+++|++||.|..|.+ +++..+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~-~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQL-HRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 478999999999999999999999999999875 56777889999999999999999999976 8999999999999976
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 160
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=1.4e-07 Score=103.34 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH---HHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE---YWI 394 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e---~W~ 394 (1169)
-.+...|...++++.++..|+++++. .|.++.....|..++..+.+.|++++|+..|++++...|.++. .|+
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 34455677889999999999999882 2333334467888999999999999999999999999998776 688
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHHhhccChHHH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 001060 395 RYVLCMEAS--------GSMDLAHNALARATHVFVKRLPEIH-----------------LFAARFKEQNGDIDGARAAYQ 449 (1169)
Q Consensus 395 ~~a~~l~~~--------g~~e~A~~vl~rAl~~~~p~~~~l~-----------------~~~a~~~e~~g~~~~A~~~~~ 449 (1169)
..+.++... |+++.|...|++++..+ |++...+ +..+.++...|++.+|+..|+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 888877765 67899999999999988 6665433 345777888999999999999
Q ss_pred HHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 450 LVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 450 ~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
++ ++..|+ ..++|+.++.++..+|++++|..+++.....+
T Consensus 191 ~a-l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 191 TV-VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HH-HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 98 666554 56899999999999999999999988776654
No 161
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=2.2e-07 Score=98.13 Aligned_cols=173 Identities=14% Similarity=0.172 Sum_probs=148.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 001060 375 VVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE 454 (1169)
Q Consensus 375 a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~ 454 (1169)
+...+-+.....|.+.++ ..++..+...|+-+....+...+...+ +++..++..+++...+.|++..|...+.++ ..
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA-~~ 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKA-AR 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHH-hc
Confidence 444455556678999999 999988888898888888888866555 778888888999999999999999999998 88
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 455 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 455 ~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
+.|++.++|..++-++.+.|+++.|+..|.+++++.+++ |.+..+++.+++. .|+++.|+.++.++...-+.+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------p~~~nNlgms~~L-~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE------PSIANNLGMSLLL-RGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC------chhhhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999998753 6688888888776 999999999999999998889
Q ss_pred HHHHHHHHHhHhhCCChhHHHHHHHH
Q 001060 535 KPLLEALIHFESIQSSPKQIDFLEQL 560 (1169)
Q Consensus 535 ~~l~~~~a~~E~~~~~~~~~~~~r~l 560 (1169)
..+..+++..-..+++ +++++.+
T Consensus 202 ~~v~~NLAl~~~~~g~---~~~A~~i 224 (257)
T COG5010 202 SRVRQNLALVVGLQGD---FREAEDI 224 (257)
T ss_pred hHHHHHHHHHHhhcCC---hHHHHhh
Confidence 9999999988888887 3444444
No 162
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.84 E-value=1.3e-07 Score=108.25 Aligned_cols=154 Identities=16% Similarity=0.240 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQ----------DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMD 152 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~----------~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e 152 (1169)
+....|.+.|+.||.|+++|..|+.+-..+.. .-.++-..+|++||+.+|++..+|+.|.+...+....+
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 45678999999999999999999998766521 12356778999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHhcCCCCC---------------CHHHHHHHHH
Q 001060 153 KVVEVYERAVQGVTYSVDIWLHYCIFAINTYG--DPETIRRLFERGLAYVGTDYL---------------SFPLWDKYIE 215 (1169)
Q Consensus 153 ~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~--~~e~Ar~~~erAl~~~g~d~~---------------s~~lw~~y~~ 215 (1169)
+..+.++++|..+|.+..||..|+.|...... .++.++.+|.++|........ -..+...+..
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985443 588999999999987532111 1356777788
Q ss_pred HHHHhhhHHHHHHHHHHHHhc
Q 001060 216 YEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 216 ~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
|+...|-.++|..+++-+|+.
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHH
Confidence 888899999999999999986
No 163
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=1.5e-08 Score=89.92 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=65.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
-.+-|||+|||+++|.+++-++|.+||.|..++| .. +...+|-|||.|++..+|.+|+.. +|..+.++.+.|-.-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRi--G~--~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRI--GN--TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEe--cC--ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3578999999999999999999999999988654 22 234689999999999999999987 899999999999654
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
.
T Consensus 93 q 93 (124)
T KOG0114|consen 93 Q 93 (124)
T ss_pred C
Confidence 3
No 164
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=2.7e-09 Score=114.00 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=70.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++||||.+.++..++.||..|..||+|+++.+. -|..|+++||||||+|+-++.++-|++. ||..++||.|+|..-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMS-WDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMS-WDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecc-cccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 789999999999999999999999999998753 3778999999999999999999999987 899999999999743
No 165
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=1.5e-08 Score=111.92 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=68.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V~ 1108 (1169)
.++-||||.||.++.|++|..+|++.|+|-++++ ++++.+|.+||||||+|.+.+.|+.||+. |+++|. |+.|.|.
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRL-MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRL-MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEE-eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 4689999999999999999999999999999985 56888999999999999999999999987 777774 7777764
No 166
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=2.6e-08 Score=110.22 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=65.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..+-|||+||+.++|++.|+++|++||.|.+|.. + |-||||.|.+.++|.+|++. |+..|+|..|.|..+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk-~--------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK-P--------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeec-c--------cceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 3478999999999999999999999999998642 2 34999999999999999987 899999999999988
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+|..
T Consensus 329 KP~~ 332 (506)
T KOG0117|consen 329 KPVD 332 (506)
T ss_pred CChh
Confidence 8643
No 167
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.79 E-value=1.6e-08 Score=113.51 Aligned_cols=78 Identities=32% Similarity=0.542 Sum_probs=71.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++|+++|+++|++||.|..+.+ ..++.+|+++|||||+|.+.+++..|+.. ++..|.|+.|.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~-~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRL-VRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEe-eeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999999999999999999999998865 45667899999999999999999999988 7899999999999954
No 168
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.7e-08 Score=113.89 Aligned_cols=81 Identities=22% Similarity=0.362 Sum_probs=72.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|.|+|||+.+...+|+.+|+.||.|..|. +..+..|+..|||||.|....+|..||+. |+..|+||+|-|+++
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~--IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIV--IPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEE--cccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 358999999999999999999999999999965 44566677779999999999999999988 899999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
-++.
T Consensus 194 V~Kd 197 (678)
T KOG0127|consen 194 VDKD 197 (678)
T ss_pred cccc
Confidence 6543
No 169
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=8.3e-07 Score=104.82 Aligned_cols=123 Identities=15% Similarity=0.055 Sum_probs=93.0
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
+.+++.++.+.+++.+..+|.....|+.++.+..+.++++.|.+.|.+++... |++.+.|..++..+.+.++..+|+..
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 35677777777777777777777777777777777777777777777777765 77777777777777777777777777
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 448 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 448 ~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
+.++ ++.+-++..+|.+|..+....|++++|++.|.+.+.....
T Consensus 576 l~EA-lKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 576 LKEA-LKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHH-hhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 7777 5666777777777777777777777777777777776543
No 170
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.76 E-value=1.3e-05 Score=89.15 Aligned_cols=295 Identities=13% Similarity=0.116 Sum_probs=188.5
Q ss_pred HhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHH
Q 001060 147 RVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRV 226 (1169)
Q Consensus 147 ~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a 226 (1169)
-.|+|.+|+++..|.-+.. ...-+-+..+--.-...|+.+.+-.++.++-+..|.+- -.....-.+....++++..|
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~--l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT--LAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch--HHHHHHHHHHHHhCCCchhH
Confidence 4478888888888876654 34444333333222367888888888888887555432 22333344455556777777
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccC
Q 001060 227 AMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG 306 (1169)
Q Consensus 227 ~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~ 306 (1169)
+.-...+++.-+.+..
T Consensus 173 ~~~v~~ll~~~pr~~~---------------------------------------------------------------- 188 (400)
T COG3071 173 RENVDQLLEMTPRHPE---------------------------------------------------------------- 188 (400)
T ss_pred HHHHHHHHHhCcCChH----------------------------------------------------------------
Confidence 7777666665332211
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001060 307 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC 386 (1169)
Q Consensus 307 ~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~ 386 (1169)
.+.....+|...+.+.+....+.+.-+...++-.....-+-..|...++=....++.+-....+++.-...
T Consensus 189 ---------vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l 259 (400)
T COG3071 189 ---------VLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL 259 (400)
T ss_pred ---------HHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh
Confidence 11222233344444444333333333321111100001112334444443333344444555666655556
Q ss_pred cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 387 ~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
.+++++-..|+..+...|+.++|..+.+.+++.. -++.+...+..+ +-++...-.+..++. ++..|+++.+++.+
T Consensus 260 r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--~D~~L~~~~~~l--~~~d~~~l~k~~e~~-l~~h~~~p~L~~tL 334 (400)
T COG3071 260 RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--WDPRLCRLIPRL--RPGDPEPLIKAAEKW-LKQHPEDPLLLSTL 334 (400)
T ss_pred hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--cChhHHHHHhhc--CCCCchHHHHHHHHH-HHhCCCChhHHHHH
Confidence 7889999999999999999999999999999865 344443333322 356677777788887 67799999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
+.++.+.+.+.+|...|+.||...+. ..-|..+++.+.+ .|+..+|-.+++++|.+
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~~~s-------~~~~~~la~~~~~-~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKLRPS-------ASDYAELADALDQ-LGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCC-------hhhHHHHHHHHHH-cCChHHHHHHHHHHHHH
Confidence 99999999999999999999998754 2346666777666 99999999999999854
No 171
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.75 E-value=2.3e-08 Score=121.03 Aligned_cols=72 Identities=28% Similarity=0.420 Sum_probs=64.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEEEe
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V~~ 1109 (1169)
++.|||+|||+++++++|+++|++||.|.+|.| ++ .||||||+|++.++|.+||+. ++..|+|+.|+|.+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i-~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMM-LP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE-EC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 589999999999999999999999999999764 32 358999999999999999974 68999999999987
Q ss_pred cc
Q 001060 1110 RR 1111 (1169)
Q Consensus 1110 ~r 1111 (1169)
+.
T Consensus 75 s~ 76 (481)
T TIGR01649 75 ST 76 (481)
T ss_pred cC
Confidence 64
No 172
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.7e-05 Score=92.32 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=54.3
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCC
Q 001060 497 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTAN 576 (1169)
Q Consensus 497 ~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~ 576 (1169)
...|.|....++|... ..++++|-.++-.+.+.. ..+.+-...+-+ +-.-|...++...| ..++
T Consensus 1077 ~sDp~ll~RcadFF~~-~~qyekAV~lL~~ar~~~--------~AlqlC~~~nv~-----vtee~aE~mTp~Kd--~~~~ 1140 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFEN-NQQYEKAVNLLCLAREFS--------GALQLCKNRNVR-----VTEEFAELMTPTKD--DMPN 1140 (1416)
T ss_pred CCCHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH--------HHHHHHhcCCCc-----hhHHHHHhcCcCcC--CCcc
Confidence 4457888888888765 667888877766554321 122222222211 11122233444333 2367
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHH
Q 001060 577 AAEREELSCVFLEFLGLFGDAQLIKK 602 (1169)
Q Consensus 577 ~~~~~~i~~~~l~fe~~~Gd~~~i~~ 602 (1169)
.+.|.+|++.-.+|....|+-..+-|
T Consensus 1141 e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1141 EQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHH
Confidence 78999999999999999998665443
No 173
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.75 E-value=4.9e-08 Score=85.09 Aligned_cols=72 Identities=35% Similarity=0.650 Sum_probs=62.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+|+|+|||..+++++|+++|+.||.|..+.+. .+. .++++|+|||+|.+.+++..|+.. ++..++|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~-~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIV-RDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEe-eCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 48999999999999999999999999987643 333 336789999999999999999987 7888999999886
No 174
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=2.3e-07 Score=92.13 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=62.2
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
++|.+...-..++..+...|++++|+..|++++..+|.++++|..++.++...|++++|..+|++++... |+++..|+.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 90 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFH 90 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 4444444455555555555566666666666665566666666666665555555666666666655554 555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLE 461 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 461 (1169)
++.++...|++++|...|+++ ++++|++..
T Consensus 91 la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~ 120 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLA-IEICGENPE 120 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhccccch
Confidence 565555566666666665555 455554433
No 175
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=3.3e-08 Score=108.73 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=69.9
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeece--EE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGR--QV 1105 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~g~--~l 1105 (1169)
|.+.-++|||-||..++|.|||.+|++||.|.+|.| ++|+.||.++|||||.|.+.+++.+|+.+ |-++|-|- .|
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl-~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINL-IKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEe-ecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 456678999999999999999999999999999864 88999999999999999999999999987 57777663 46
Q ss_pred EEEec
Q 001060 1106 YIEER 1110 (1169)
Q Consensus 1106 ~V~~~ 1110 (1169)
.|.++
T Consensus 110 qvk~A 114 (510)
T KOG0144|consen 110 QVKYA 114 (510)
T ss_pred eeccc
Confidence 66544
No 176
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.72 E-value=2.9e-07 Score=91.28 Aligned_cols=112 Identities=7% Similarity=0.058 Sum_probs=102.9
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001060 90 NIVKAN-SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 90 ~al~~n-P~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 168 (1169)
-..... +++.+.-+.++-.+.. .|+++.|.++|+-++..+|.+..||+.++..+...|++++|+..|.+++.+.|++
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~--~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLME--VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 345566 7888999999988877 4699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001060 169 VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 169 ~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~ 204 (1169)
+...++.+..++ ..|+.+.|++.|+.++..++.++
T Consensus 103 p~~~~~ag~c~L-~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 103 PQAPWAAAECYL-ACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred chHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCh
Confidence 999999999999 89999999999999999887543
No 177
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.5e-08 Score=105.56 Aligned_cols=79 Identities=25% Similarity=0.425 Sum_probs=73.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
...|||..|.+-+|+++|.-+|+.||.|.+|.| +++++||.+-.||||+|++.+++++|.-. ..+.|++|+|.|++..
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceV-IRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEV-IRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeE-EecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 368999999999999999999999999999986 89999999999999999999999999855 7899999999999875
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 318 S 318 (479)
T KOG0415|consen 318 S 318 (479)
T ss_pred h
Confidence 4
No 178
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=1.5e-06 Score=91.92 Aligned_cols=167 Identities=19% Similarity=0.133 Sum_probs=146.2
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
+|....+ .++..-+.-.|+-+....+..+.+...+.+.++...++..+...|++..|...+.|+.... |++.++|..+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 5666777 7777777778888888888889888999999999889999999999999999999999987 8999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 511 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~ 511 (1169)
+..+.+.|+.+.|+..|.++ .++.|....+..+++..+.-.|+++.|+.++.++....+.+ ..+-.+++...-
T Consensus 141 gaaldq~Gr~~~Ar~ay~qA-l~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad------~~v~~NLAl~~~ 213 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQA-LELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD------SRVRQNLALVVG 213 (257)
T ss_pred HHHHHHccChhHHHHHHHHH-HHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc------hHHHHHHHHHHh
Confidence 99999999999999999999 89999999999999999999999999999999999876422 456677776655
Q ss_pred HHhCCHHHHHHHHHHHh
Q 001060 512 LVSRNAEKARQILVDSL 528 (1169)
Q Consensus 512 ~~~g~~e~Ar~i~~kAl 528 (1169)
. .|++.+|+++-..=+
T Consensus 214 ~-~g~~~~A~~i~~~e~ 229 (257)
T COG5010 214 L-QGDFREAEDIAVQEL 229 (257)
T ss_pred h-cCChHHHHhhccccc
Confidence 4 999999999866443
No 179
>smart00361 RRM_1 RNA recognition motif.
Probab=98.70 E-value=5e-08 Score=84.82 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=52.9
Q ss_pred HHHHHHHHh----cCCCeeeeeEEeecCCC--cccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1047 AFEIEEEFQ----NFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1047 ~~~L~~~F~----~~G~i~~~~i~~~~~~~--g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+++|+++|+ +||.|.++...+.++.+ |+++|||||+|.+.++|.+|+.. +|..++||.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578999998 99999997522445555 88999999999999999999987 8999999999863
No 180
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.67 E-value=2.3e-08 Score=98.25 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=72.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
...+|||+||+..++++.|.++|-+.|+|..+.| -+++.+...+|||||+|.+.++|+=||+. |.+.+-||+|+|..+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~i-PkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHI-PKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeec-chhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4589999999999999999999999999999875 56777888999999999999999999987 899999999999877
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 181
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.67 E-value=6.4e-08 Score=103.49 Aligned_cols=90 Identities=26% Similarity=0.324 Sum_probs=79.3
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.+++||+|+.+.+|.++++.+|+.||.|..++| ..++.+|++|||+||+|.+.+.++.++.+++..|.|+.+.|..
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti-~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTV-PKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceee-eccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 345689999999999999999999999999998876 4577778899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCC
Q 001060 1110 RRPNTGSTSRG 1120 (1169)
Q Consensus 1110 ~r~~~~~~~rg 1120 (1169)
++.+..+.+++
T Consensus 177 ~r~~~pg~~~~ 187 (231)
T KOG4209|consen 177 KRTNVPGMGRS 187 (231)
T ss_pred eeeecCCcCCC
Confidence 99875544443
No 182
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.67 E-value=1.7e-07 Score=113.41 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=67.8
Q ss_pred CCceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1031 GEVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
.++++|||+|||+ .+|+++|+++|+.||.|.+|+|+. + .+|||||+|.+.++|..||.. ++..|.|+.|+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~-~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK-N-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 3568999999997 699999999999999999987633 3 258999999999999999976 8999999999999
Q ss_pred eccCC
Q 001060 1109 ERRPN 1113 (1169)
Q Consensus 1109 ~~r~~ 1113 (1169)
.++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 87654
No 183
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.67 E-value=3.5e-08 Score=96.97 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=73.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||||.+.+++..|.+.|+.||.|...--.+++..||.++|||||.|++.+...+||.. |+..++.++|+|+.+.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 478999999999999999999999999876433467888999999999999999999999988 8999999999999887
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
.+.
T Consensus 176 k~~ 178 (203)
T KOG0131|consen 176 KKD 178 (203)
T ss_pred ecC
Confidence 653
No 184
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=9.5e-05 Score=97.85 Aligned_cols=213 Identities=11% Similarity=0.013 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-----CHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-----YPEYWI 394 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~-----~~e~W~ 394 (1169)
+..++...++++.+...+++++...--+..+..+.....+..++..+...|++++|...+++++..... ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 345566778888888888877652100000000111122334455556679999999999999876432 234555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccC-hHHHH-----HHHHHHHHcCCHHHHHHHHHHHhhhcCCCh----HHHHH
Q 001060 395 RYVLCMEASGSMDLAHNALARATHVFVKRL-PEIHL-----FAARFKEQNGDIDGARAAYQLVHTETSPGL----LEAII 464 (1169)
Q Consensus 395 ~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~-~~l~~-----~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~----~~~~~ 464 (1169)
.++.++...|+++.|...+.++..+..... ...+. .....+...|+.+.|...+... ....+.. ...+.
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~-~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQA-PKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhc-CCCCCccchhHHHHHH
Confidence 577778889999999999999987642211 11111 1123344578999999988775 2212111 12256
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 465 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 465 ~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.++.++...|++++|+.+|++++..............++..++..++. .|+.++|+..+.+|++.....
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~-~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ-QGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhCcc
Confidence 778888899999999999999998754322112223456677777776 999999999999999987544
No 185
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=1.3e-07 Score=101.94 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=68.5
Q ss_pred CCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeceEEE
Q 001060 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVY 1106 (1169)
Q Consensus 1029 ~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~g~~l~ 1106 (1169)
+|...++||||||...+++.+|+++|-+||+|+++.+.. .++||||+|.+..+|+.|.+. +...|+|++|+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-------ccccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 344678999999999999999999999999999976533 246999999999999999987 68899999999
Q ss_pred EEeccCC
Q 001060 1107 IEERRPN 1113 (1169)
Q Consensus 1107 V~~~r~~ 1113 (1169)
|.+.++.
T Consensus 297 i~Wg~~~ 303 (377)
T KOG0153|consen 297 IKWGRPK 303 (377)
T ss_pred EEeCCCc
Confidence 9998883
No 186
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.58 E-value=4.6e-08 Score=111.47 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=69.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+..++|||||.+++++++|+.+|+.||.|..|.+ .++..||+++|||||+|.+.+++.+|++. ||++|-||.|+|...
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l-~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQL-TKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeee-ccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 3455999999999999999999999999999764 44666999999999999999999999866 899999999998654
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
.
T Consensus 356 ~ 356 (549)
T KOG0147|consen 356 T 356 (549)
T ss_pred e
Confidence 4
No 187
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.58 E-value=0.00043 Score=77.51 Aligned_cols=314 Identities=13% Similarity=0.092 Sum_probs=210.7
Q ss_pred HHhCCCCHHHHHH----------HHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001060 92 VKANSSDFSAWTA----------LLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERA 161 (1169)
Q Consensus 92 l~~nP~d~~aw~~----------L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~era 161 (1169)
|-.-|.....|+. +..-+.++++|++.+|.++..+.-+..+...-.++.-++.--..|+++++-..+.++
T Consensus 65 v~~~~~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~ea 144 (400)
T COG3071 65 VLRTPAHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEA 144 (400)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344555566654 555556667899999999999988888877777777778888889999999999999
Q ss_pred HhccCCCHHHHH--HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001060 162 VQGVTYSVDIWL--HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 239 (1169)
Q Consensus 162 L~~~P~s~~lw~--~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~ 239 (1169)
-+. +.+..+-. .-+++.. ..++++.|+...+.++...+. ...+-..-.+.....|+|..+..+...+-+...
T Consensus 145 ae~-~~~~~l~v~ltrarlll-~~~d~~aA~~~v~~ll~~~pr---~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~- 218 (400)
T COG3071 145 AEL-AGDDTLAVELTRARLLL-NRRDYPAARENVDQLLEMTPR---HPEVLRLALRAYIRLGAWQALLAILPKLRKAGL- 218 (400)
T ss_pred hcc-CCCchHHHHHHHHHHHH-hCCCchhHHHHHHHHHHhCcC---ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC-
Confidence 887 34444443 4455665 678999999999999984444 444445555555567888877777666554311
Q ss_pred hHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhC-CCccchhhhccccccCCccccccCCccccCcchHHHHHHHHH
Q 001060 240 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA-PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 318 (1169)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~ 318 (1169)
++.+++..+....+.- +.+... .. +......||+-
T Consensus 219 ---------------------l~~~e~~~le~~a~~glL~q~~~----------~~-----------~~~gL~~~W~~-- 254 (400)
T COG3071 219 ---------------------LSDEEAARLEQQAWEGLLQQARD----------DN-----------GSEGLKTWWKN-- 254 (400)
T ss_pred ---------------------CChHHHHHHHHHHHHHHHHHHhc----------cc-----------cchHHHHHHHh--
Confidence 1112221111110000 000000 00 00001112221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
.-+.+ ..+.++-..|+..+.+.|+.+.|..+.+.+|...-. +. .+.++.
T Consensus 255 ------------------~pr~l-----------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~-L~~~~~ 303 (400)
T COG3071 255 ------------------QPRKL-----------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PR-LCRLIP 303 (400)
T ss_pred ------------------ccHHh-----------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hh-HHHHHh
Confidence 11111 233567778888888999999999999999976443 33 333333
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
.+ .-++...-.+..++.++.+ |+++.++..+++++.+++.+.+|...|+.+ +..-|+ ..-|..++..+.++|+..+
T Consensus 304 ~l-~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaA-l~~~~s-~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 304 RL-RPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAA-LKLRPS-ASDYAELADALDQLGEPEE 379 (400)
T ss_pred hc-CCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHH-HhcCCC-hhhHHHHHHHHHHcCChHH
Confidence 22 3567777888889999888 899999999999999999999999999988 565553 5567778888999999999
Q ss_pred HHHHHHHHHHhh
Q 001060 479 AFSLYEQAIAIE 490 (1169)
Q Consensus 479 A~~iy~~Al~~~ 490 (1169)
|..+++.++...
T Consensus 380 A~~~r~e~L~~~ 391 (400)
T COG3071 380 AEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
No 188
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.57 E-value=7.3e-08 Score=101.07 Aligned_cols=72 Identities=25% Similarity=0.512 Sum_probs=65.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
.++||||||.++++.+|+.+|++||+|.+|+| | |.||||..++...+..||.. ++.+|+|..|+|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI-v--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI-V--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee-e--------cccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 46999999999999999999999999999986 3 35999999999999999985 89999999999998877
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
+.
T Consensus 74 Ks 75 (346)
T KOG0109|consen 74 KS 75 (346)
T ss_pred cC
Confidence 63
No 189
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.54 E-value=3.3e-07 Score=75.82 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=46.2
Q ss_pred HHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1050 IEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1050 L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
|.++|++||.|.++.+ ..+. +|+|||+|.+.++|..|++. ++..++|+.|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~--~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKI--FKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEE--ETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEE--EeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999999999654 2221 58999999999999999986 999999999999874
No 190
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.52 E-value=5.1e-07 Score=111.09 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=60.5
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcC------------CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCC
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNF------------GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPI 1098 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~------------G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~ 1098 (1169)
...++|||||||+++|+++|+++|.+| +.|..+ ..++.+|||||+|.+.++|..||.++|+
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~-------~~~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSV-------NINKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEE-------EECCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 356899999999999999999999975 223322 1235679999999999999999988999
Q ss_pred eeeceEEEEEec
Q 001060 1099 QLAGRQVYIEER 1110 (1169)
Q Consensus 1099 ~i~g~~l~V~~~ 1110 (1169)
.|.|+.|+|...
T Consensus 246 ~~~g~~l~v~r~ 257 (509)
T TIGR01642 246 IYSNVFLKIRRP 257 (509)
T ss_pred EeeCceeEecCc
Confidence 999999999643
No 191
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.52 E-value=3.4e-07 Score=101.44 Aligned_cols=82 Identities=18% Similarity=0.393 Sum_probs=73.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
....|||++||.++++.++++.|.+||.|..+.+ +.+..+.+.+||+||.|.+.+++.+++...-+.|+|+.|.|..+-
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~-~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVI-MYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEE-eecccccccccceeeEeccccccceecccceeeecCceeeEeecc
Confidence 3579999999999999999999999998888754 557888999999999999999999999988999999999998877
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 175 pk~ 177 (311)
T KOG4205|consen 175 PKE 177 (311)
T ss_pred chh
Confidence 654
No 192
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.51 E-value=1.3e-06 Score=98.64 Aligned_cols=84 Identities=24% Similarity=0.458 Sum_probs=72.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.-++.+||.+|...+...+|+.+|++||.|.-.+| |.+..+--.+|||||++.+.++|.+||+. +.+.|.|+.|.|+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKV-VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKV-VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceee-eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 35789999999999999999999999999988776 44544445789999999999999999987 79999999999998
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++.-..
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 876543
No 193
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=3.8e-05 Score=87.90 Aligned_cols=138 Identities=11% Similarity=-0.035 Sum_probs=100.3
Q ss_pred cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 387 ~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
+.....|+-.+.-....|++++|+..++..+... |+++.++...++++.+.++.++|.+.++++ +.+.|+..-+|+.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka-l~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKA-LALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCCCccHHHHHH
Confidence 5667777777776666777777777777777666 777777777777777777777777777777 67777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
++.+...|+..+|+.++.+.+...|+ .|..|..+++-+.. .|+..+|...+.+++.....
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~------dp~~w~~LAqay~~-~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPE------DPNGWDLLAQAYAE-LGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCC------CchHHHHHHHHHHH-hCchHHHHHHHHHHHHhCCC
Confidence 77777777777777777777776643 25677777766554 77777777776666655543
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.4e-06 Score=91.60 Aligned_cols=122 Identities=15% Similarity=0.042 Sum_probs=111.8
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS---MDKVV 155 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~---~e~A~ 155 (1169)
.+++.-+.+|+..|..||.|.+.|..|++.+... ++...|..+|.+++.+.|+|.++|..|+..++...+ ..++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 4578899999999999999999999999999985 699999999999999999999999999998887753 67899
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
.+|+++|+..|.++.....++.-++ ..|++.+|...++..|+..+.+
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~af-e~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAF-EQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999888888777 7899999999999999987765
No 195
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.2e-05 Score=89.34 Aligned_cols=235 Identities=14% Similarity=0.105 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC----------
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---------- 389 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---------- 389 (1169)
+...|.+.+.|..++..|..+|+ +.|.+...|..-+..++-.++++++..-+++.+...+..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~--------~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAID--------MCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHH--------hCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 35567788899999999999998 677777777776655544444443333333322222211
Q ss_pred ------------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHH
Q 001060 390 ------------------------------------------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 390 ------------------------------------------~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
...-+.-+.++.-.+++++|..+--+.+++. +.+.+.
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~a 205 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEA 205 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHH
Confidence 2233334455666677777777776767655 667777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGL------------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 495 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~------------~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~ 495 (1169)
.+..+.++.-.++.+.|...|+++ +.++|+. ++.|...++-..+.|++..|.++|..||.+.|.+.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qa-l~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~- 283 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQA-LRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK- 283 (486)
T ss_pred HHhcccccccccchHHHHHHHhhh-hccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc-
Confidence 777788888888999999999998 6777764 45688888888999999999999999999998653
Q ss_pred cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001060 496 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 496 ~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~ 570 (1169)
.++..+|.+.+....+ +|+.++|..-.+.|+++++.-..-+..-+.-.+.+ +..+.+..-|++++....+
T Consensus 284 -~~naklY~nra~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~l---e~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 284 -KTNAKLYGNRALVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLAL---EKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred -chhHHHHHHhHhhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccc
Confidence 3456678777777666 99999999999999999865433222222111111 2245567778888776544
No 196
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.49 E-value=8.7e-08 Score=106.14 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=74.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||++|+++++++.|++.|++||+|.+|. .++++.+++++||+||+|++.+.+.++|....+.|+|+.|.+..+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~-vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCV-VMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEE-EeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 568999999999999999999999999999995 4788899999999999999999999999988999999998887765
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 543
No 197
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=8.5e-06 Score=93.02 Aligned_cols=160 Identities=18% Similarity=0.067 Sum_probs=137.9
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a 432 (1169)
+.....|.-.+.-+...|++++++.++...+...|.++-+|...++++...|+..+|.+.+++++... |+.+.+++.++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHH
Confidence 35566777766666678999999999999999999999999999999999999999999999999988 88899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
..+.+.|+..+|..++++. +..+|+++..|..++..+..+|+..++...+- +.++.
T Consensus 382 ~all~~g~~~eai~~L~~~-~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------------E~~~~ 437 (484)
T COG4783 382 QALLKGGKPQEAIRILNRY-LFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------------EGYAL 437 (484)
T ss_pred HHHHhcCChHHHHHHHHHH-hhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------------HHHHh
Confidence 9999999999999999997 67799999999999999999999777665433 33333
Q ss_pred HhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 513 VSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
.|+++.|...+.+|.+....+...|
T Consensus 438 -~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 438 -AGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred -CCCHHHHHHHHHHHHHhccCCcHHH
Confidence 7889999999999998875554444
No 198
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.47 E-value=3.7e-06 Score=83.50 Aligned_cols=100 Identities=21% Similarity=0.177 Sum_probs=90.4
Q ss_pred CC-hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHH
Q 001060 351 LS-VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 351 l~-~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
+. +..++....|+-.....|+++.|..+|+-....+|.+.+.|+.++.++...|++++|+.+|.+|+.+. |+++..++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~ 107 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPW 107 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence 45 66677788888777889999999999999999999999999999999999999999999999999887 89999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
..+.++...|+++.|++.|+.+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999987
No 199
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.45 E-value=2.6e-06 Score=99.03 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=69.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
-|.-+...|++++|+.+|++|+++. |+++.+|+.+|.++...|++++|+..++++ ++++|++..+|++++.++..+|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A-l~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKA-IELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCCHHHHHHHHHHHHHhCC
Confidence 3444555677777777777777766 667777777777777777777777777776 66777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhhC
Q 001060 476 LEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~ 492 (1169)
+++|+..|++++.+.|.
T Consensus 86 ~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 86 YQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 77777777777777754
No 200
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.44 E-value=2.8e-07 Score=101.56 Aligned_cols=84 Identities=24% Similarity=0.517 Sum_probs=77.2
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+|..+||.+||.+.-+.+|-..|..||.|++.+|++ |+.||-+|||+||.|++..++..||.. ||+.|++++++|..
T Consensus 422 peGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfi-dk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 422 PEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFI-DKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCccceeeeeCchhhhhHHHHHHhccccceeEEEEEE-ecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 3678899999999999999999999999999998855 788999999999999999999999987 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
+|.+..
T Consensus 501 k~~~~n 506 (510)
T KOG0144|consen 501 KRDRNN 506 (510)
T ss_pred eeccCC
Confidence 987643
No 201
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=0.00012 Score=87.05 Aligned_cols=87 Identities=22% Similarity=0.210 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 467 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 467 (1169)
.++.+|.=++.|++..|++|.|+.+|..|-. |+-..++..-+|++++|..+-++ .++..+.+.++
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhla 974 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLA 974 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHH
Confidence 4567888899999999999999999977654 44556666678888888776554 34566777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 001060 468 NMERRLGNLEDAFSLYEQAIAI 489 (1169)
Q Consensus 468 ~~e~r~g~~e~A~~iy~~Al~~ 489 (1169)
..+...|++-+|...|.+|...
T Consensus 975 R~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHHHHH
Confidence 8888889999998888777543
No 202
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00056 Score=74.67 Aligned_cols=306 Identities=12% Similarity=0.127 Sum_probs=173.6
Q ss_pred HhCCHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhH
Q 001060 147 RVGSMDKVVEVYERAVQGV---TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW 223 (1169)
Q Consensus 147 ~~~~~e~A~~l~eraL~~~---P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~ 223 (1169)
...+|.-|+.+++-.+... -++.++|+.+|.|. .|++++|...|+.+.. .+--...+|..+.-...-.|.+
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh---LgdY~~Al~~Y~~~~~---~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH---LGDYEEALNVYTFLMN---KDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh---hccHHHHHHHHHHHhc---cCCCCcccchhHHHHHHHHHHH
Confidence 3445666666665555332 14788999999984 5899999999998887 2222456776665444445677
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCcc
Q 001060 224 SRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPV 303 (1169)
Q Consensus 224 ~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~ 303 (1169)
.+|..+-.++-+.|... -.+|....++
T Consensus 108 ~eA~~~~~ka~k~pL~~-RLlfhlahkl---------------------------------------------------- 134 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCI-RLLFHLAHKL---------------------------------------------------- 134 (557)
T ss_pred HHHHHHHhhCCCChHHH-HHHHHHHHHh----------------------------------------------------
Confidence 88877776666665441 1112111111
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001060 304 SAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL 383 (1169)
Q Consensus 304 ~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL 383 (1169)
.+.+.|..+...+++. .|+-| .++...--.-.+.+|+.+|.|.|
T Consensus 135 ----ndEk~~~~fh~~LqD~-------------~EdqL-------------------SLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 135 ----NDEKRILTFHSSLQDT-------------LEDQL-------------------SLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred ----CcHHHHHHHHHHHhhh-------------HHHHH-------------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111111111110 11111 11111111124678999999999
Q ss_pred HhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH--cCCHHHHHHHHHHHhhhcCCChHH
Q 001060 384 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ--NGDIDGARAAYQLVHTETSPGLLE 461 (1169)
Q Consensus 384 ~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~--~g~~~~A~~~~~~a~~~~~P~~~~ 461 (1169)
..++.+..+=..++.++.+..-++-+.+++.--++.+ |+++-+....+-...+ +|+..++. ...+........+
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E--~k~ladN~~~~~~- 254 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDE--KKELADNIDQEYP- 254 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHH--HHHHHhcccccch-
Confidence 9999999988888999988887888888877777777 7777666665544443 45443332 2222111222211
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHH
Q 001060 462 AIIKHANMERRL-----GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 536 (1169)
Q Consensus 462 ~~~~~a~~e~r~-----g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~ 536 (1169)
.+....|+ .+-+.|..++-..+... |+..++++-+..+ .+++++|..+.+. +.|..+.
T Consensus 255 ----f~~~l~rHNLVvFrngEgALqVLP~L~~~I---------PEARlNL~iYyL~-q~dVqeA~~L~Kd---l~PttP~ 317 (557)
T KOG3785|consen 255 ----FIEYLCRHNLVVFRNGEGALQVLPSLMKHI---------PEARLNLIIYYLN-QNDVQEAISLCKD---LDPTTPY 317 (557)
T ss_pred ----hHHHHHHcCeEEEeCCccHHHhchHHHhhC---------hHhhhhheeeecc-cccHHHHHHHHhh---cCCCChH
Confidence 22222232 12355666665555554 4455566555445 8899999988764 5777773
Q ss_pred H--HHH--HHHhHhhCCChhHHHHHHHHHHHHhhcC
Q 001060 537 L--LEA--LIHFESIQSSPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 537 l--~~~--~a~~E~~~~~~~~~~~~r~l~eral~~~ 568 (1169)
- +.. ++.+-...|..+.++.+...|.-+-.+.
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 2 223 3334444566667777777777664443
No 203
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=3.7e-06 Score=90.59 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
+.-..+.++|++|+..|.++|+ ++|.+.-.+-+-+..+.+.|.++.|++-.+.||..+|+|...|.+++..+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3444455555555555555555 45555544555555555555555555555555555555555555555555
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHH
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
..+|++++|+..|++||++. |++...
T Consensus 160 ~~~gk~~~A~~aykKaLeld-P~Ne~~ 185 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELD-PDNESY 185 (304)
T ss_pred HccCcHHHHHHHHHhhhccC-CCcHHH
Confidence 55555555555555555544 444433
No 204
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.38 E-value=2.5e-06 Score=90.93 Aligned_cols=81 Identities=27% Similarity=0.338 Sum_probs=71.1
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+.-.++|+|.|||+.|+++||+++|..||.++.+ .+.-...|++.|.|-|.|...++|.+|++. +++.++|+.++++
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~--~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRV--AVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEE--eeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3344889999999999999999999999998884 456677899999999999999999999988 8999999999987
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
...+
T Consensus 158 ~i~~ 161 (243)
T KOG0533|consen 158 IISS 161 (243)
T ss_pred EecC
Confidence 6543
No 205
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=5.7e-06 Score=89.19 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=64.5
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 445 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 445 (1169)
+.+.++|..|+..|.+||.+.|.++-++...+..|.+.|.++.|++-++.||.+. |...+.|..++..+..+|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 3455666666666666666666666666666666666666666666666666655 566666666666666666666666
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANM 469 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~ 469 (1169)
..|+++ ++++|++...|..+-..
T Consensus 170 ~aykKa-LeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 170 EAYKKA-LELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHhh-hccCCCcHHHHHHHHHH
Confidence 666666 56666665444443333
No 206
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=5.7e-07 Score=96.55 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=71.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.-.+|||..+.++.+++||+.+|+-||+|++|.+ .+...++.+|||||++|.+..+...||.. |-+.++|+.|+|-..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~L-Ar~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEe-eccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3578999999999999999999999999999974 67777778999999999999999999977 889999999999765
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
-+
T Consensus 288 vT 289 (544)
T KOG0124|consen 288 VT 289 (544)
T ss_pred cC
Confidence 43
No 207
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=2.4e-05 Score=78.78 Aligned_cols=117 Identities=21% Similarity=0.143 Sum_probs=100.8
Q ss_pred HcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHcCCH
Q 001060 368 RDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDI 441 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~a~~~e~~g~~ 441 (1169)
..++...+...+++.+...|.. ...++.++..+...|++++|...|+.++... ++. ..+++.++.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 4788899999999999999988 5688889999999999999999999999865 332 45788899999999999
Q ss_pred HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001060 442 DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 487 (1169)
Q Consensus 442 ~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al 487 (1169)
++|+..++.+ .-.+-...++...++++.+.|++++|+..|++||
T Consensus 102 d~Al~~L~~~--~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQI--PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhc--cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999774 3344566788999999999999999999999885
No 208
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.33 E-value=6.4e-07 Score=95.43 Aligned_cols=94 Identities=20% Similarity=0.388 Sum_probs=86.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 124 YDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 124 ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
|-+....||.+..+|..|+....+.+.+.+.-.+|-.||+.||.++|||+.-|.|+.+..++.+.+|.+|.++|. ++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR---~N 172 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR---MN 172 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc---cC
Confidence 445666899999999999999999999999999999999999999999999999999889999999999999999 55
Q ss_pred CCCHHHHHHHHHHHHHh
Q 001060 204 YLSFPLWDKYIEYEYMQ 220 (1169)
Q Consensus 204 ~~s~~lw~~y~~~e~~~ 220 (1169)
..+..||..|.++|.+.
T Consensus 173 ~~~p~iw~eyfr~El~y 189 (435)
T COG5191 173 SRSPRIWIEYFRMELMY 189 (435)
T ss_pred CCCchHHHHHHHHHHHH
Confidence 66899999999999874
No 209
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.32 E-value=1.2e-06 Score=88.53 Aligned_cols=78 Identities=26% Similarity=0.301 Sum_probs=67.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcC-CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNF-GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~-G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..-+||+.+|..+.+.++...|.+| |.|..++ +-|+++||.+||||||+|++.+.|.-|-+. |+..|.|+.|.|.+-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~r-lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFR-LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEE-eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 3568999999999999999999988 6676654 458999999999999999999999988876 899999999888654
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
-
T Consensus 128 p 128 (214)
T KOG4208|consen 128 P 128 (214)
T ss_pred C
Confidence 3
No 210
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.32 E-value=1.1e-05 Score=77.79 Aligned_cols=105 Identities=18% Similarity=0.084 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 503 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~ 503 (1169)
+++..+..+.+.|++++|...|.++ +..+|++ ..+++.++.++.+.|+++.|+.+|++++...|+. +..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAF-LKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---PKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---CcccHHH
Confidence 3444455555555555555555554 3334433 3445555555555555555555555555554321 1123344
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHH
Q 001060 504 AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 536 (1169)
Q Consensus 504 ~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~ 536 (1169)
..++.++.. .|++++|...|+++++..|++..
T Consensus 80 ~~~~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 80 LKLGMSLQE-LGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHH-hCChHHHHHHHHHHHHHCcCChh
Confidence 455555444 55556666666666555555543
No 211
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.32 E-value=3.8e-07 Score=106.86 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=71.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.++.|.|+|||+.++..+++.+|..||.|++|+|... ...+.++|||||+|-++.++.+|+.+ ..+.+-||+|.++++
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 3689999999999999999999999999999887554 34566899999999999999999987 588899999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
...
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 753
No 212
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.32 E-value=1.2e-06 Score=89.95 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=70.0
Q ss_pred CceEEEEecCCCCCCHHHHHH----HHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEE----EFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~----~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
+..+|||.||+..+..++|+. +|++||.|.+|. -.++.+.+|-|||.|.+.+.|-.|+.. +|+-+-|+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~----a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDIS----AFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEE----ecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 345999999999999999998 999999998742 234678999999999999999999987 89999999999
Q ss_pred EEeccCCCC
Q 001060 1107 IEERRPNTG 1115 (1169)
Q Consensus 1107 V~~~r~~~~ 1115 (1169)
|.+++.+..
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999886643
No 213
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.31 E-value=8.9e-06 Score=94.59 Aligned_cols=104 Identities=17% Similarity=0.086 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
+..-+.-....|++++|+.+|+++|..+|.++.+|+.++.++...|++++|+..+++++.+. |+++.+|+.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 34445555678999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHH
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAII 464 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~ 464 (1169)
|++++|+..|+++ ++++|++..+..
T Consensus 84 g~~~eA~~~~~~a-l~l~P~~~~~~~ 108 (356)
T PLN03088 84 EEYQTAKAALEKG-ASLAPGDSRFTK 108 (356)
T ss_pred CCHHHHHHHHHHH-HHhCCCCHHHHH
Confidence 9999999999998 789998865433
No 214
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.6e-06 Score=99.90 Aligned_cols=73 Identities=25% Similarity=0.467 Sum_probs=65.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.|||+||+.+++..+|.++|+.||.|.+|++..+. .| ++|| ||+|++.++|.+||+. ||..++|+.|.|....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~--~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE--NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC--CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 39999999999999999999999999999864433 34 8999 9999999999999988 8999999999996543
No 215
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.27 E-value=3.5e-05 Score=88.24 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=128.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHH
Q 001060 377 KLYERCLIACANYPEYWIRYVLCMEASGS------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGA 444 (1169)
Q Consensus 377 ~lyeraL~~~~~~~e~W~~~a~~l~~~g~------------~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A 444 (1169)
.-|++.+..+|.+.+.|+.|+.+-...-. .+.-+.+|+||++.+ |++..+++.+.....+..+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 35778888899999999999987765422 345568999999986 79999999999988888888888
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhhCCCccC------------chHHHHHHHHHH
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYEQAIAIEKGKEHSQ------------TLPMLYAQYSRF 509 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---g~~e~A~~iy~~Al~~~~~~~~~~------------~~~~l~~~~a~~ 509 (1169)
.+.++++ +..+|++..+|..|.++.... -.++.++.+|.++|.......... .+-.++..+.+|
T Consensus 85 ~~~we~~-l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 85 AKKWEEL-LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHH-HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 8889997 677999999999999988663 357899999999998655322211 223356788999
Q ss_pred HHHHhCCHHHHHHHHHHHhhhc---CCCH------HHHHHHHHhHhh
Q 001060 510 LHLVSRNAEKARQILVDSLDHV---QLSK------PLLEALIHFESI 547 (1169)
Q Consensus 510 ~~~~~g~~e~Ar~i~~kAl~~~---p~s~------~l~~~~a~~E~~ 547 (1169)
+.. .|-.+.|..+++-.|+.+ |... ..+..+..|-.+
T Consensus 164 l~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~FWeS 209 (321)
T PF08424_consen 164 LRQ-AGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEFWES 209 (321)
T ss_pred HHH-CCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHhCc
Confidence 887 999999999999999964 3321 344455555554
No 216
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=9.6e-06 Score=73.18 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
|..++..+...|++++++.+|++++...+.+..+|..++.++...+++++|..+|++++... +....+|..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555555555555555555555555555444 33444444455555445
Q ss_pred CCHHHHHHHHHHH
Q 001060 439 GDIDGARAAYQLV 451 (1169)
Q Consensus 439 g~~~~A~~~~~~a 451 (1169)
|++++|+..+.++
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 5555555544443
No 217
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.0037 Score=68.47 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=94.8
Q ss_pred CCchHHHHHHHHHHhCCC---CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSS---DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE 156 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~---d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~ 156 (1169)
+...++..|+-.+..+-. +.+.|.....+ .+ |++++|...|+.+....--+.++|..++-...-+|.|.+|..
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~f--hL--gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HL--GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hh--ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 355677777776655543 45566665554 33 599999999999998777778999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 157 VYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 157 l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
+-++|-+ .|....|.++.+- ..++-++. -.|..-|+- .....|-..-+. .+.-.+.+|+.+|+|+|..
T Consensus 113 ~~~ka~k-~pL~~RLlfhlah----klndEk~~-~~fh~~LqD----~~EdqLSLAsvh--YmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 113 IAEKAPK-TPLCIRLLFHLAH----KLNDEKRI-LTFHSSLQD----TLEDQLSLASVH--YMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHhhCCC-ChHHHHHHHHHHH----HhCcHHHH-HHHHHHHhh----hHHHHHhHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 9988876 4777777776653 23444333 344444431 112222222222 2224678899999999886
Q ss_pred ch
Q 001060 237 PI 238 (1169)
Q Consensus 237 p~ 238 (1169)
.+
T Consensus 181 n~ 182 (557)
T KOG3785|consen 181 NP 182 (557)
T ss_pred Ch
Confidence 43
No 218
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.24 E-value=8.6e-06 Score=73.51 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 471 (1169)
+|+..+..+...|++++|..+++++++.. |+...+|+.++.++...+++++|..+|+++ ..+.|.+..+|..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKA-LELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcchhHHHHHHHHHH
Confidence 58889999999999999999999999987 777889999999999999999999999998 7789999899999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhh
Q 001060 472 RLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 472 r~g~~e~A~~iy~~Al~~~~ 491 (1169)
..|++++|..++++++...|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 99999999999999987653
No 219
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.23 E-value=1.4e-05 Score=81.14 Aligned_cols=84 Identities=25% Similarity=0.322 Sum_probs=68.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---ceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~---g~~l~V 1107 (1169)
..+++||.+||.++...+|..+|..|---+.+-+...++...-++-+|||+|.+..+|.+|+.+ ||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3589999999999999999999998755555444444443334567999999999999999988 899997 567999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
|.++.+..
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99987654
No 220
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.21 E-value=0.0056 Score=81.14 Aligned_cols=283 Identities=9% Similarity=0.016 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh-hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC----H--HH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----P--EY 392 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~-~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~----~--e~ 392 (1169)
+..++...++++.+...+++++.. . ...+. .....+..++..+...|++++++..+++++...... . ..
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~--~--~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAE--L--PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc--C--CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 445666778899999999998762 0 11111 112233445555677899999999999999764321 1 23
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc----CC-ChH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKR-------LPEIHLFAARFKEQNGDIDGARAAYQLVHTET----SP-GLL 460 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-------~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~----~P-~~~ 460 (1169)
+..++..+...|+++.|...+++++.+.... ...++..++.++...|++++|+..+.++ ..+ .+ ...
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a-l~~~~~~~~~~~~ 612 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG-LEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-HHhhhccCchHHH
Confidence 4456777778999999999999998865321 1234556678888899999999999987 332 12 134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhhhcCCCHH---
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ-YSRFLHLVSRNAEKARQILVDSLDHVQLSKP--- 536 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~-~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~--- 536 (1169)
..+...+.+....|+++.|...+++++........ ......... .....+...|+.+.|...+............
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY-HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc-cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 45666788888999999999999999886532110 000001111 1112223378999999998877653322221
Q ss_pred -HHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 537 -LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 537 -l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
++..++......+. .+.+..++++++....... . .-....+...+.......|+.+.......+..+++...
T Consensus 692 ~~~~~~a~~~~~~g~---~~~A~~~l~~al~~~~~~g--~-~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 692 GQWRNIARAQILLGQ---FDEAEIILEELNENARSLR--L-MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhC--c-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 12344444455555 3446667777765422111 1 11334455566677788899999999999999998654
No 221
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=2.7e-05 Score=74.98 Aligned_cols=99 Identities=20% Similarity=0.216 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh---HHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAII 464 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~ 464 (1169)
+.++..+..+..+|++++|...|++++..+ |++ ..+++.++.++.+.|+++.|..+|+++ +...|++ ..+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV-VKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHH-HHHCCCCCcccHHHH
Confidence 344555555555555555555555555444 222 344555555555555555555555554 3334442 34455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 465 KHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 465 ~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
.++.++...|++++|..+|++++...|
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 555555555555555555555555544
No 222
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=1.7e-06 Score=90.08 Aligned_cols=73 Identities=26% Similarity=0.504 Sum_probs=63.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
..+|||+||+.+.+.+|+.+|..||.|..+.+ ..||+||+|++..+|..||.. ++..|.|..+.|+.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---------ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 46999999999999999999999999998643 127999999999999999966 89999998899999886
Q ss_pred CCC
Q 001060 1113 NTG 1115 (1169)
Q Consensus 1113 ~~~ 1115 (1169)
..+
T Consensus 73 ~~~ 75 (216)
T KOG0106|consen 73 KRR 75 (216)
T ss_pred ccc
Confidence 543
No 223
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.18 E-value=0.00019 Score=81.03 Aligned_cols=170 Identities=12% Similarity=0.166 Sum_probs=85.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHhccC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 001060 364 DFIERDGDFNKVVKLYERCLIACAN------YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437 (1169)
Q Consensus 364 ~~~~~~gd~~~a~~lyeraL~~~~~------~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~ 437 (1169)
..+...+++++|...|+++..+.-. -...|...+.++.+. ++++|+.+|++|+.++. .
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~---------------~ 106 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR---------------E 106 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH---------------h
Confidence 3445667778888888877666421 123555555655443 77788888888777652 3
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL-GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~-g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
.|+...|-.++.+ .+.++... |++++|+.+|++|++..............+...+.+..+ .|+
T Consensus 107 ~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-l~~ 170 (282)
T PF14938_consen 107 AGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-LGR 170 (282)
T ss_dssp CT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TT-
T ss_pred cCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-hCC
Confidence 4444444333333 24444444 566666666666666544322211222345555666554 666
Q ss_pred HHHHHHHHHHHhhhcCCC-------HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcC
Q 001060 517 AEKARQILVDSLDHVQLS-------KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 517 ~e~Ar~i~~kAl~~~p~s-------~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~ 568 (1169)
+++|.++|++.....-++ ..++...+...+..++ .-.++..|+++....
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD---YVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTS
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhC
Confidence 666666666665532111 1233333333444444 334556666655443
No 224
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.18 E-value=3.8e-06 Score=98.71 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=66.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g--~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
+|||+||++++|.++|..+|.+.|.|+++.|..+.+..+ .+.|||||+|.+.++|++|++. +|+.|+|+.|.|....
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999987654433221 2459999999999999999998 7999999999998877
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=98.16 E-value=4.9e-05 Score=87.55 Aligned_cols=166 Identities=8% Similarity=0.063 Sum_probs=129.3
Q ss_pred HHH--HHHHHHH--HHcC---ChHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHH
Q 001060 357 ENW--HNYLDFI--ERDG---DFNKVVKLYERCL---IACANYPEYWIRYVLCMEAS---------GSMDLAHNALARAT 417 (1169)
Q Consensus 357 ~~W--~~yl~~~--~~~g---d~~~a~~lyeraL---~~~~~~~e~W~~~a~~l~~~---------g~~e~A~~vl~rAl 417 (1169)
+.| ..|+.-. ...+ +.++|+.+|.||+ ..+|.+...|..++.++... ....+|+...+||+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 778 5565422 2222 4558999999999 88999888777777665432 23567888999999
Q ss_pred HHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccC
Q 001060 418 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 497 (1169)
Q Consensus 418 ~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~ 497 (1169)
++. +.++.++..+|.+..-.++++.|...|+++ ..++|+...+|+.++.+..-.|+.++|+..+++|+.+.|-+-
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA-~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~--- 406 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQA-KIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR--- 406 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHH-hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh---
Confidence 987 899999999999999999999999999999 899999999999999999999999999999999999997431
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 498 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 498 ~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
...+...|.+.++ ..-+++|.++|-+-.+.
T Consensus 407 -~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 407 -KAVVIKECVDMYV--PNPLKNNIKLYYKETES 436 (458)
T ss_pred -HHHHHHHHHHHHc--CCchhhhHHHHhhcccc
Confidence 1223333443433 45588888888765443
No 226
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=1.5e-06 Score=89.92 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=66.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C-CCeeece--EEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S-PIQLAGR--QVYIE 1108 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~-~~~i~g~--~l~V~ 1108 (1169)
.+++|||-|...-+|+|++.+|..||.|.+|.+ + ....|.+|||+||.|.+..+++.||.. + ..++-|- .|.|.
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tv-l-rg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTV-L-RGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEE-e-cCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 489999999999999999999999999999875 3 445688999999999999999999987 4 3455553 48888
Q ss_pred eccCC
Q 001060 1109 ERRPN 1113 (1169)
Q Consensus 1109 ~~r~~ 1113 (1169)
++.+.
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 77654
No 227
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.12 E-value=4.7e-06 Score=98.40 Aligned_cols=76 Identities=20% Similarity=0.331 Sum_probs=67.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
-+++||||+|+..+++.||.++|+.||.|.+|.+ + .++|||||......+|.+|+.+ +.+.+.++.|+|.++
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-I------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEee-c------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3689999999999999999999999999999643 2 2568999999999999999987 789999999999988
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
..+.
T Consensus 493 ~g~G 496 (894)
T KOG0132|consen 493 VGKG 496 (894)
T ss_pred ccCC
Confidence 7654
No 228
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.12 E-value=7.6e-06 Score=73.98 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRR 191 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~ 191 (1169)
+++++.|+.+|+++++..|. +..+|+.+|..+.+.|++++|+.++++ +...+.+.+.++.+++.+. ..+++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLL-KLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH-HTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH-HhCCHHHHHH
Confidence 46899999999999999995 578899999999999999999999999 8888888888888899888 8999999999
Q ss_pred HHHHH
Q 001060 192 LFERG 196 (1169)
Q Consensus 192 ~~erA 196 (1169)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99975
No 229
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=9.9e-05 Score=74.36 Aligned_cols=126 Identities=10% Similarity=0.094 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC---HHHHHH
Q 001060 101 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS---VDIWLH 174 (1169)
Q Consensus 101 aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s---~~lw~~ 174 (1169)
.+..++..+. .++..++...+++++..+|.+ ...++.++......|++++|...|++++...|+. .-.++.
T Consensus 14 ~y~~~~~~~~---~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQALQ---AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH---CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3444444443 368899999999999999999 6778888999999999999999999999987543 235667
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001060 175 YCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234 (1169)
Q Consensus 175 y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L 234 (1169)
++.+++ ..+++++|+..++.. .........+....+.....|+++.|+..|+++|
T Consensus 91 LA~~~~-~~~~~d~Al~~L~~~----~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILL-QQGQYDEALATLQQI----PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHH-HcCCHHHHHHHHHhc----cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 777777 789999999999662 2333456788888899999999999999999875
No 230
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.11 E-value=1.2e-05 Score=72.63 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=62.0
Q ss_pred cCChHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001060 369 DGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~--~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
.|++++|+.+|++++...|. +..+|+.+|.++.+.|++++|..++++ .... +.+..+++.+|+++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46788888888888888874 466788888888888888888888888 5544 5566777777888888888888888
Q ss_pred HHHHH
Q 001060 447 AYQLV 451 (1169)
Q Consensus 447 ~~~~a 451 (1169)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88763
No 231
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.11 E-value=4.7e-06 Score=91.90 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=64.8
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
...++|||+|||++.|+..|++-|..||.|++++| + ..|+++| .|.|.++++|++|+.. ++..++||.|+|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-m---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-M---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhh-h---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 35688999999999999999999999999999876 2 2456666 9999999999999998 89999999999975
No 232
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.10 E-value=4.5e-05 Score=85.73 Aligned_cols=204 Identities=15% Similarity=0.137 Sum_probs=139.1
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-A-NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-~-~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
+..+...+.|+.++....+.+.++..++..+... . .++-+-+-.+.++...|++++|+.++.+. .+.+....
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 4556777888888765556666666655544332 2 22333344445555678999988777553 45677778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAII--KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 508 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~--~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~ 508 (1169)
...++.+.++++.|.+.+++. .+++.+..-+.+ .|+.+....+++.+|.-+|+...+..+ ..+.++...+.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~-~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~------~t~~~lng~A~ 209 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNM-QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG------STPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC------CCHHHHHHHHH
Confidence 888999999999999999997 777777654433 333443334469999999999776653 22667777777
Q ss_pred HHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 509 FLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 509 ~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.... .|++++|.+++++|++.+|.+...+.+.+-+....|.+. +.+++++.......|+.+
T Consensus 210 ~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~--~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 210 CHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT--EAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC--HHHHHHHHHCHHHTTTSH
T ss_pred HHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHhCCCCh
Confidence 7666 999999999999999999999999999888888877652 234555555555555543
No 233
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.10 E-value=0.00012 Score=76.03 Aligned_cols=119 Identities=17% Similarity=0.091 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII 464 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~ 464 (1169)
.....++.++.++...|++++|..+|++++.+. ++ ...+|+.++.++...|++++|+.+|.++ +.+.|++...+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQA-LELNPKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcccHHHHH
Confidence 455678888888888899999999999998765 33 2468888888899999999999999988 678888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 465 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 465 ~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
.++.++...|+...+...++.++. .+++|++++++++...|++.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~---------------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEA---------------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHH---------------------------HHHHHHHHHHHHHhhCchhH
Confidence 888888888876665544443321 25667788888888888763
No 234
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.08 E-value=7e-06 Score=86.55 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=66.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|+||||.+.++-.+|+..|.+||+|..|+| + |+|+||.|+-.++|..||.. ++.+|.|++++|...
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdi-v--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI-V--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeee-e--------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 4578999999999999999999999999999885 3 36999999999999999976 899999999999887
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
..|-+
T Consensus 148 tsrlr 152 (346)
T KOG0109|consen 148 TSRLR 152 (346)
T ss_pred ccccc
Confidence 66543
No 235
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.08 E-value=1.1e-05 Score=68.80 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=50.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH
Q 001060 104 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV 169 (1169)
Q Consensus 104 ~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~ 169 (1169)
.++..+.. .|++++|+++|++++..+|.+..+|..++.++...|++++|+.+|++++...|.++
T Consensus 2 ~~a~~~~~--~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQ--QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHH--CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHH--cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 34555555 35888888888888888888888888888888888888888888888888888663
No 236
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.07 E-value=1.7e-05 Score=68.58 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhccC
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG-SMDKVVEVYERAVQGVT 166 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~-~~e~A~~l~eraL~~~P 166 (1169)
+...|..++..+... +++++|+..|+++|..+|++..+|..++..+.+.| ++++|++.|+++|++.|
T Consensus 2 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 566788888877774 58888888888888888888888888888888887 68888888888887765
No 237
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.07 E-value=1.3e-05 Score=69.16 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~ 177 (1169)
+|++++|.++|++++..+|++..+|+.++.++++.|++++|+.++++++...|++..+|..+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999999988888877664
No 238
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.06 E-value=9.6e-05 Score=76.80 Aligned_cols=128 Identities=11% Similarity=0.017 Sum_probs=99.2
Q ss_pred HHHHHHHhCCC--CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001060 87 RLWNIVKANSS--DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERA 161 (1169)
Q Consensus 87 ~l~~al~~nP~--d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~era 161 (1169)
.+...+..++. ....+..++..+.. .+++++|..+|++++...|+. ..+|..++.++.+.|++++|+..|+++
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 21 LILKILPINKKAKEAFVYYRDGMSAQA--DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HHHHHcccccHhhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444555554 45556788888777 469999999999999988764 468999999999999999999999999
Q ss_pred HhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001060 162 VQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 240 (1169)
Q Consensus 162 L~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~ 240 (1169)
+...|.+...|..++..+. ..++...+..-++.++. .+++|..+|++++...+.+
T Consensus 99 l~~~p~~~~~~~~lg~~~~-~~g~~~~a~~~~~~A~~-----------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 99 LELNPKQPSALNNIAVIYH-KRGEKAEEAGDQDEAEA-----------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHhCcccHHHHHHHHHHHH-HcCChHhHhhCHHHHHH-----------------------HHHHHHHHHHHHHhhCchh
Confidence 9999999999998888777 66776666655555553 3566777888888775554
No 239
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=8.6e-05 Score=80.90 Aligned_cols=121 Identities=18% Similarity=0.092 Sum_probs=110.0
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc---CCHHHHHHH
Q 001060 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN---GDIDGARAA 447 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~---g~~~~A~~~ 447 (1169)
+.++.+.-.+.-|..+|.+.+-|..++.++..+|+++.|...|.+|+++. +++++++..|+..+..+ ....+++.+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 46678888999999999999999999999999999999999999999988 89999999999887653 345779999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 448 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 448 ~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
|+++ +.++|.+....+.++.-+...|++.+|...++..+...|.+
T Consensus 216 l~~a-l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 216 LRQA-LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHH-HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9998 88999999999999999999999999999999999998754
No 240
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.05 E-value=5.4e-06 Score=85.91 Aligned_cols=81 Identities=16% Similarity=0.289 Sum_probs=71.0
Q ss_pred CCCCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEE
Q 001060 1027 GLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1105 (1169)
Q Consensus 1027 ~~~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l 1105 (1169)
.+.+.+-.+||.|.|..+++++.|-..|++|-.....++ ++++.||+++|||||.|.+..++..|+.. +|..++.|.|
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akv-iRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKV-IRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccc-cccccccccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 344556689999999999999999999999987776665 78999999999999999999999999976 7999999987
Q ss_pred EEE
Q 001060 1106 YIE 1108 (1169)
Q Consensus 1106 ~V~ 1108 (1169)
+..
T Consensus 263 klR 265 (290)
T KOG0226|consen 263 KLR 265 (290)
T ss_pred Hhh
Confidence 763
No 241
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.05 E-value=1.8e-05 Score=68.44 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~iy~~Al~~~ 490 (1169)
+.+|+.+|..+...|++++|+..|.++ ++++|++..+|+.++.++.++| ++++|+..|+++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~a-i~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKA-IELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHH-HHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 445556666666666666666666665 5556666666666666666666 4666666666666554
No 242
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.03 E-value=1e-05 Score=87.47 Aligned_cols=80 Identities=25% Similarity=0.252 Sum_probs=69.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeee------eEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPD------GVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1104 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~------~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~ 1104 (1169)
-.+.|||.|||.++|.+++.++|++||-|.+. +|.+.....|+.||-|.|.|-..+++.-|+.. ++..|+|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 35789999999999999999999999988763 23333344589999999999999999999998 799999999
Q ss_pred EEEEecc
Q 001060 1105 VYIEERR 1111 (1169)
Q Consensus 1105 l~V~~~r 1111 (1169)
|+|+.++
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999876
No 243
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.03 E-value=0.00011 Score=89.05 Aligned_cols=139 Identities=14% Similarity=0.068 Sum_probs=111.1
Q ss_pred ChhcHHHHHHHHHHH--HHc---CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHH
Q 001060 352 SVTELENWHNYLDFI--ERD---GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG--------SMDLAHNALARATH 418 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~--~~~---gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g--------~~e~A~~vl~rAl~ 418 (1169)
-+.+++.|..|+.-. ... ++..+++.+|++++..+|.+...|-.++.++.... +...+...+++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 456678888886633 333 34678999999999999999998888776554321 23455566666665
Q ss_pred H-hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 419 V-FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 419 ~-~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
+ ..+..+.+|..++......|++++|...|+++ ++++|+ ...|..++.++...|+.++|...|++|+.+.|.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA-l~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKA-IDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4 13567789999999988999999999999999 899995 789999999999999999999999999999874
No 244
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.01 E-value=5.7e-05 Score=78.15 Aligned_cols=100 Identities=21% Similarity=0.161 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
..+|+.++.++...|++++|...|++++.+. ++ ...+|..++.++...|++++|+..|+++ +.+.|.+...|..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A-l~~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA-LERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCcHHHHHHH
Confidence 5677777877777788888888888887765 33 3457777888888888888888888887 66777777777777
Q ss_pred HHHHH-------HcCCHH-------HHHHHHHHHHHhhh
Q 001060 467 ANMER-------RLGNLE-------DAFSLYEQAIAIEK 491 (1169)
Q Consensus 467 a~~e~-------r~g~~e-------~A~~iy~~Al~~~~ 491 (1169)
+.++. ++|+++ ++..+|++++...|
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 77776 666766 44455555555554
No 245
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=7.8e-05 Score=86.49 Aligned_cols=120 Identities=18% Similarity=0.141 Sum_probs=107.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC
Q 001060 361 NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 440 (1169)
Q Consensus 361 ~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~ 440 (1169)
.++.+....+.++.++.+|++..... ++++..++.++...++-.+|..++.++++.. |.+..++...++|+...++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 34566667789999999999988665 5688889998888888899999999999877 8889999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 441 IDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 485 (1169)
Q Consensus 441 ~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~ 485 (1169)
++.|+.+.+++ +++.|+....|..++.++..+|+++.|...+..
T Consensus 250 ~~lAL~iAk~a-v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 250 YELALEIAKKA-VELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHH-HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 99999999998 899999999999999999999999999977663
No 246
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.00 E-value=0.025 Score=63.24 Aligned_cols=294 Identities=16% Similarity=0.102 Sum_probs=193.8
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHH
Q 001060 113 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD--HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIR 190 (1169)
Q Consensus 113 ~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~--~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar 190 (1169)
+.|+-..||+.-.+.-.+--.+.+..+.+.+ .-+-.|+++.|++-|+-++. +|.--.+-+.-+.++-...|+.+.|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 4577888888888877666666565555543 44456999999999999987 46554443333333334679999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHH
Q 001060 191 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAA 270 (1169)
Q Consensus 191 ~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~ 270 (1169)
++-+++-...+. -.-.|...++-....|+|+.|+++.+.........-. .+
T Consensus 175 ~yAe~Aa~~Ap~---l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~----------------------~a---- 225 (531)
T COG3898 175 HYAERAAEKAPQ---LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD----------------------VA---- 225 (531)
T ss_pred HHHHHHHhhccC---CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh----------------------hH----
Confidence 999999886554 3345666666666679999999888765433110000 00
Q ss_pred HHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCC
Q 001060 271 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP 350 (1169)
Q Consensus 271 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~p 350 (1169)
+..+-.+......-.-.-+...++..-..++|
T Consensus 226 ----------------------------------------eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K-------- 257 (531)
T COG3898 226 ----------------------------------------ERSRAVLLTAKAMSLLDADPASARDDALEANK-------- 257 (531)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--------
Confidence 00000000000000000112233333444555
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HhhccChHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH--VFVKRLPEIH 428 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~--~~~p~~~~l~ 428 (1169)
+.|.-...-..-...+-+.|+.-+.-.++|.+.+..|+ +++|..|... +.|+. +..-++|+-+ ...|++.+..
T Consensus 258 L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a--r~gdt--a~dRlkRa~~L~slk~nnaes~ 332 (531)
T COG3898 258 LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA--RSGDT--ALDRLKRAKKLESLKPNNAESS 332 (531)
T ss_pred cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh--cCCCc--HHHHHHHHHHHHhcCccchHHH
Confidence 55555555555556667789999999999999988885 8999999863 45643 4444555433 3347888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhh
Q 001060 429 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL-GNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 429 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~-g~~e~A~~iy~~Al~~~~ 491 (1169)
+..++.....|++..||.--+.+ ....|. ..+++.+++++.-. |+-.+++..+-+++....
T Consensus 333 ~~va~aAlda~e~~~ARa~Aeaa-~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 333 LAVAEAALDAGEFSAARAKAEAA-AREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHHHhccchHHHHHHHHHH-hhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 99998888999999999888876 566774 45788889998776 999999999999998653
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=97.95 E-value=0.00011 Score=84.77 Aligned_cols=126 Identities=10% Similarity=-0.021 Sum_probs=109.2
Q ss_pred CCCCCchHHHHHHHHH---HhCCCCHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001060 77 SVPAMSGEEDRLWNIV---KANSSDFSAWTALLEETEKL-------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 146 (1169)
Q Consensus 77 ~~~~~~~~~~~l~~al---~~nP~d~~aw~~L~~~~~~~-------~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~ 146 (1169)
++.....++..|.+|+ .++|....++-.|+...... .+....+|+++-+++++++|.+......++....
T Consensus 270 t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 270 TPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred CHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456778899999999 99999888887776655433 1357788999999999999999999999999888
Q ss_pred HhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 147 RVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 147 ~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
-.++++.+..+|+|++.+.|++.+.|+.++-+.. ..|+.++|++.+++|++..|..
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchh
Confidence 8889999999999999999999999999988777 8899999999999999966543
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00014 Score=82.01 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
-+.-+..+-+.|++..|...|+||+....+.. .-+.++...+. ++. ..+|+.+|.++.+.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~~--~~k------~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKAE--ALK------LACHLNLAACYLKL 270 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHHH--HHH------HHHhhHHHHHHHhh
Confidence 34456677788899999999999885433211 11112222111 111 23667788888899
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 518 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e 518 (1169)
+++.+|+..+.++ +++.|+|..+.++.+..+..+|+++.|+..|++++++.|.+ ..+-..++.+--+.....+
T Consensus 271 ~~~~~Ai~~c~kv-Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N------ka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 271 KEYKEAIESCNKV-LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN------KAARAELIKLKQKIREYEE 343 (397)
T ss_pred hhHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 78899999999999999999999999999999999998754 3455555555444333445
Q ss_pred HHHHHHHHHhhhcC
Q 001060 519 KARQILVDSLDHVQ 532 (1169)
Q Consensus 519 ~Ar~i~~kAl~~~p 532 (1169)
+.+++|.+.+....
T Consensus 344 kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 344 KEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccc
Confidence 56777777776543
No 249
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.93 E-value=2.9e-05 Score=66.89 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=47.5
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
+.|++++|+.+|++++...|.+.++|+.++.++.+.|++++|+.++++++... |+++.++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD-PDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG-TTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCHHHHHHHHhc
Confidence 46777777777777777777777777777777777777777777777777766 555666666654
No 250
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=5.2e-05 Score=64.69 Aligned_cols=62 Identities=27% Similarity=0.358 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
.+|..+.+.|++++|+.+|+++ ++.+|++..+|+.++.++.++|++++|+..|+++++..|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~-l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQA-LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHH-HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4566777788888888888887 6777888888888888888888888888888888877653
No 251
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.038 Score=59.60 Aligned_cols=80 Identities=11% Similarity=-0.103 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 193 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~ 193 (1169)
+.++..+++++....++.|.+-...-.++-.+....+|..|.++|++.-..+|.-...-+.+++-+. ..+.+..|.++.
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY-~A~i~ADALrV~ 101 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY-KACIYADALRVA 101 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhcccHHHHHHH
Confidence 3589999999999999999888888888999999999999999999999999977776666676666 455566665554
Q ss_pred H
Q 001060 194 E 194 (1169)
Q Consensus 194 e 194 (1169)
.
T Consensus 102 ~ 102 (459)
T KOG4340|consen 102 F 102 (459)
T ss_pred H
Confidence 4
No 252
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.88 E-value=3.1e-05 Score=87.69 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=63.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
..|-+++||+.||++||.+||+-.=.| ...|.+.....+++.|-|||.|++.+.+++|+..+...|+.|-|.|..+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv-~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIV-PDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCccc-ccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 578899999999999999999976444 3345444555678889999999999999999999989999999999654
No 253
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.88 E-value=0.00023 Score=82.64 Aligned_cols=123 Identities=14% Similarity=0.009 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
+..+..++..+++++.++..|++..+ .+| +++..++..+...++..+|+.++.++|...|.+.+++...
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~--------~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q 240 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRE--------RDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ 240 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHh--------cCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34445566777889999999999877 333 4566677777777888899999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
+.+|...++++.|+.+.++|+.+. |..-..|..++.++.+.|+++.|+..++.+
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999987 899999999999999999999999887753
No 254
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.87 E-value=0.00025 Score=73.36 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=84.5
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
.+...|..++......|++++|+..|++++...+.. ..+|..++.++...|++++|+.+|++++.+. |.....|..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 456778999999899999999999999999886653 4589999999999999999999999999987 777888888
Q ss_pred HHHHHH-------HcCCHHHHHH-------HHHHHhhhcCCC
Q 001060 431 AARFKE-------QNGDIDGARA-------AYQLVHTETSPG 458 (1169)
Q Consensus 431 ~a~~~e-------~~g~~~~A~~-------~~~~a~~~~~P~ 458 (1169)
++.++. ..|++++|+. +|+++ ...+|.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a-~~~~p~ 152 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA-IALAPG 152 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH-HHhCcc
Confidence 888777 7778775554 44454 455664
No 255
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.87 E-value=0.00037 Score=84.54 Aligned_cols=143 Identities=10% Similarity=0.017 Sum_probs=108.2
Q ss_pred HhccCCHHHHHHHHHHHHH--c---CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 001060 384 IACANYPEYWIRYVLCMEA--S---GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN--------GDIDGARAAYQL 450 (1169)
Q Consensus 384 ~~~~~~~e~W~~~a~~l~~--~---g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~--------g~~~~A~~~~~~ 450 (1169)
..-+.+.+.|-.|..-+.. . ++.+.|+.+|++|+++. |++..+|-.++..+... .++..+.....+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3446677776666554332 2 24778999999999988 89988888766654332 123455555555
Q ss_pred Hhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001060 451 VHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 528 (1169)
Q Consensus 451 a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl 528 (1169)
+ .. ..|....++..++......|++++|...|++|+.+.+. ...|..+++++.. .|+.++|...|++|+
T Consensus 410 a-~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-------~~a~~~lG~~~~~-~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 410 I-VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-------WLNYVLLGKVYEL-KGDNRLAADAYSTAF 480 (517)
T ss_pred h-hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4 33 36777788888888888899999999999999999852 4578888888776 999999999999999
Q ss_pred hhcCCCHH
Q 001060 529 DHVQLSKP 536 (1169)
Q Consensus 529 ~~~p~s~~ 536 (1169)
.++|....
T Consensus 481 ~L~P~~pt 488 (517)
T PRK10153 481 NLRPGENT 488 (517)
T ss_pred hcCCCCch
Confidence 99999874
No 256
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.86 E-value=1.3e-05 Score=81.30 Aligned_cols=76 Identities=24% Similarity=0.206 Sum_probs=67.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|+-..++++.|.++|-+.|+|.+|. +++.+.++.| ||||+|++.-++.-|+++ ||..+-++.+.|....
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~--ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVG--IPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEe--CCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 38999999999999999999999999998854 5666666777 999999999999999998 8999999998887654
No 257
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.84 E-value=0.00022 Score=78.76 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=68.4
Q ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHH
Q 001060 390 PEYWIRYVLCM-EASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEA 462 (1169)
Q Consensus 390 ~e~W~~~a~~l-~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~ 462 (1169)
...|+..+..+ .+.|++++|+..|+..++.+ |++ +.+++.+|.++...|++++|+..|+++ ++..|+ ..++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v-v~~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV-VKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCCcchhHH
Confidence 45555555544 34567777777777777766 444 467777777777777777777777776 544555 4566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
|++++.++..+|+.++|+.+|++++...|+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 777777777777777777777777777664
No 258
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.82 E-value=6.4e-05 Score=82.51 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=72.7
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeee------E-EeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG------V-FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1102 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~------i-~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g 1102 (1169)
...-+|||-+||..+++.+|.++|.+||.|+.-+ | +.+++.|++.||-|.|.|+|...|+.||.. ++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3567899999999999999999999999987532 1 134678999999999999999999999988 8999999
Q ss_pred eEEEEEeccCCCC
Q 001060 1103 RQVYIEERRPNTG 1115 (1169)
Q Consensus 1103 ~~l~V~~~r~~~~ 1115 (1169)
..|+|..+..+.+
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999987766553
No 259
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.82 E-value=0.0027 Score=69.72 Aligned_cols=165 Identities=10% Similarity=0.002 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY---WIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHL 429 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~---W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~ 429 (1169)
...+...+.-..+.|++++|+..|++++...|..+.. .+.++..+.+.+++++|+..|++.++.+ |++ +.+++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHHHH
Confidence 4445555665567899999999999999999977643 3667777788999999999999999999 544 45666
Q ss_pred HHHHHHHHcC---------------CH---HHHHHHHHHHhhhcCCChHHH-----------------HHHHHHHHHHcC
Q 001060 430 FAARFKEQNG---------------DI---DGARAAYQLVHTETSPGLLEA-----------------IIKHANMERRLG 474 (1169)
Q Consensus 430 ~~a~~~e~~g---------------~~---~~A~~~~~~a~~~~~P~~~~~-----------------~~~~a~~e~r~g 474 (1169)
..|......+ |. .+|...|++. ++..|+..-. -+..+.++.+.|
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l-i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL-VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH-HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6665532222 22 3566778876 7778874321 245667788999
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 475 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 526 (1169)
Q Consensus 475 ~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~k 526 (1169)
.+..|..-++.+++..|+. +..++....+...... .|..++|.++...
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t---~~~~eal~~l~~ay~~-lg~~~~a~~~~~~ 237 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDT---QATRDALPLMENAYRQ-LQLNAQADKVAKI 237 (243)
T ss_pred chHHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHH-cCChHHHHHHHHH
Confidence 9999999999999988763 3445555555566555 8889988887653
No 260
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.82 E-value=0.00048 Score=77.73 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh-hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-
Q 001060 310 AEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACA- 387 (1169)
Q Consensus 310 ~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~-~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~- 387 (1169)
.+.-..+.......|+..+++++|...|+++..- +.+--++ .-...|..-+..+.+ .++++|+..|++++...-
T Consensus 31 ~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~---~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 31 YEEAADLYEKAANCFKLAKDWEKAAEAYEKAADC---YEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH---HHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHh
Confidence 3444445566678899999999999999998751 1111121 122334444445444 499999999999998743
Q ss_pred -CC----HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-
Q 001060 388 -NY----PEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTET- 455 (1169)
Q Consensus 388 -~~----~e~W~~~a~~l~~~-g~~e~A~~vl~rAl~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~- 455 (1169)
.. ..+...++.+++.. |+++.|+..|++|+.++.... ..++...+.++.+.|++++|..+|+++....
T Consensus 107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 22 35888999999888 899999999999999885432 4567778999999999999999999973321
Q ss_pred C-C----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 456 S-P----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 456 ~-P----~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
. + +.-..++..+.+....|+.-.|...|++....+|.
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1 1 11235677777888889999999999999988753
No 261
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.81 E-value=5.9e-05 Score=80.82 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH-HHcCCHHHHHHHHHHHh
Q 001060 374 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK-EQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~-e~~g~~~~A~~~~~~a~ 452 (1169)
+...+|.|+....+.++.+|..|+.|..+.+.+.+..++|..+++.+ |.+.++|+..+.++ +..++++.+|.+|.++
T Consensus 91 k~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g- 168 (435)
T COG5191 91 KKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKG- 168 (435)
T ss_pred eeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhh-
Confidence 56777888888899999999999999999999999999999999999 89999999977665 5689999999999998
Q ss_pred hhcCCChHHHHHHHHHHHH
Q 001060 453 TETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 453 ~~~~P~~~~~~~~~a~~e~ 471 (1169)
+.++|+++.+|..|..+|.
T Consensus 169 lR~N~~~p~iw~eyfr~El 187 (435)
T COG5191 169 LRMNSRSPRIWIEYFRMEL 187 (435)
T ss_pred hccCCCCchHHHHHHHHHH
Confidence 8999999999999988874
No 262
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.79 E-value=0.00048 Score=76.14 Aligned_cols=109 Identities=12% Similarity=0.060 Sum_probs=90.6
Q ss_pred hHHHHHHHHHH-HHcCCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchH
Q 001060 425 PEIHLFAARFK-EQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 500 (1169)
Q Consensus 425 ~~l~~~~a~~~-e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~ 500 (1169)
...++..|..+ .+.|++++|+..|++. ++.+|+. ..+++.++.++...|++++|+..|++++...|+. +..+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~f-l~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~~ 217 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNF-VKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKAA 217 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchh
Confidence 34555555443 4579999999999997 7889987 4789999999999999999999999999998753 4557
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 501 MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 501 ~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
..+...+.++.. .|+.++|+++|++.++.+|++...-
T Consensus 218 dAl~klg~~~~~-~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 218 DAMFKVGVIMQD-KGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 788888888766 9999999999999999999987443
No 263
>PRK15331 chaperone protein SicA; Provisional
Probab=97.76 E-value=0.00016 Score=72.30 Aligned_cols=101 Identities=11% Similarity=-0.038 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHH
Q 001060 95 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH 174 (1169)
Q Consensus 95 nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ 174 (1169)
.+...+.-+.++--+-. +|++++|.++|.-+...+|.+.+||+.++..+...+++++|+.+|..|....++++...++
T Consensus 33 s~~~le~iY~~Ay~~y~--~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYN--QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 33445555555544444 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHH
Q 001060 175 YCIFAINTYGDPETIRRLFERGLA 198 (1169)
Q Consensus 175 y~~~~~~~~~~~e~Ar~~~erAl~ 198 (1169)
.+.+++ ..++.+.|+..|+.++.
T Consensus 111 agqC~l-~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQL-LMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHh
Confidence 999888 89999999999999998
No 264
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=6.2e-05 Score=86.87 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=64.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
.++||| +++|+.+|.++|+++|+|.+++| .++. | +-|||||.|.++.+|.+||.. |...+.|++|+|-+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rv-c~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRV-CRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEE-eecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 368999 89999999999999999999875 4455 5 899999999999999999988 78889999999977654
Q ss_pred C
Q 001060 1113 N 1113 (1169)
Q Consensus 1113 ~ 1113 (1169)
.
T Consensus 75 d 75 (369)
T KOG0123|consen 75 D 75 (369)
T ss_pred C
Confidence 3
No 265
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.73 E-value=0.0031 Score=67.34 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh---HHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP---EIHLFA 431 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~---~l~~~~ 431 (1169)
.+...+.-..+.|++.+|+..|++++...|.. +++++.++..+.+.|+++.|+..|++.++.+ |+++ .+++..
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHH
Confidence 34445555578899999999999999887754 4688888888888899999999999999988 5543 455555
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchH
Q 001060 432 ARFKEQN-----------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 500 (1169)
Q Consensus 432 a~~~e~~-----------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~ 500 (1169)
|...... +...+|+..|+.. ++..|+..- ..+|...+..+.... .
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l-i~~yP~S~y--------------~~~A~~~l~~l~~~l---------a 141 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEEL-IKRYPNSEY--------------AEEAKKRLAELRNRL---------A 141 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHH-HHH-TTSTT--------------HHHHHHHHHHHHHHH---------H
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHH-HHHCcCchH--------------HHHHHHHHHHHHHHH---------H
Confidence 5433221 2233455555554 445555321 122222222211111 0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 501 MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 501 ~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
.--...++|.++ .|.+..|..-|+..++..|++...-+.+..+...
T Consensus 142 ~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 142 EHELYIARFYYK-RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 111345777666 8999999999999999999998766555555443
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.72 E-value=0.043 Score=57.68 Aligned_cols=224 Identities=18% Similarity=0.126 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hccCCHHHHHHHHHHHHH
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLI--ACANYPEYWIRYVLCMEA 402 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~--~~~~W~~yl~~~~~~gd~~~a~~lyeraL~--~~~~~~e~W~~~a~~l~~ 402 (1169)
...+..+...+...+. .... ...............+++..++..+..++. ..+.....|...+.++..
T Consensus 36 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (291)
T COG0457 36 LGELAEALELLEEALE--------LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEA 107 (291)
T ss_pred HhhHHHHHHHHHHHHh--------cCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 3445555555655554 2221 234555666666788999999999999997 677888899999999999
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHH-HHHHcCCHHHHHHHHHHHhhhcCC---ChHHHHHHHHHHHHHcCCHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAAR-FKEQNGDIDGARAAYQLVHTETSP---GLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~-~~e~~g~~~~A~~~~~~a~~~~~P---~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
.+++..+...+..++... +.....+..... ++...|+++.|...|.++ ....| .....+..........++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 108 LGKYEEALELLEKALALD-PDPDLAEALLALGALYELGDYEEALELYEKA-LELDPELNELAEALLALGALLEALGRYEE 185 (291)
T ss_pred HhhHHHHHHHHHHHHcCC-CCcchHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCccchHHHHHHhhhHHHHhcCHHH
Confidence 999999999999998765 444455555565 788999999999999998 55777 455666666666778899999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHH
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLE 558 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r 558 (1169)
++..+.+++...+.. ....+..++..+.. .++++.|...+.+++...|.....+..........+. .+.+.
T Consensus 186 a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 256 (291)
T COG0457 186 ALELLEKALKLNPDD-----DAEALLNLGLLYLK-LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR---YEEAL 256 (291)
T ss_pred HHHHHHHHHhhCccc-----chHHHHHhhHHHHH-cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC---HHHHH
Confidence 999999999987531 23455566666555 7789999999999999999844333333222223332 45567
Q ss_pred HHHHHHhhcCC
Q 001060 559 QLVDKFLMSNS 569 (1169)
Q Consensus 559 ~l~eral~~~~ 569 (1169)
..+.+++...+
T Consensus 257 ~~~~~~~~~~~ 267 (291)
T COG0457 257 EALEKALELDP 267 (291)
T ss_pred HHHHHHHHhCc
Confidence 77777777654
No 267
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.71 E-value=0.00073 Score=65.07 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACAN---YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFA 431 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~---~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~ 431 (1169)
+++..+..+...|+.++|+.+|++++..... -...++.++..+...|++++|..+|+.++..+ |+ +..+..++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHH
Confidence 4667777778889999999999999986433 24689999999999999999999999999877 66 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHh
Q 001060 432 ARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
+..+...|+.++|...+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999998887763
No 268
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.68 E-value=3.3e-05 Score=85.83 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=70.1
Q ss_pred ceEEE-EecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1033 VKSVY-VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~-V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++| |+||++.+++++|+.+|..+|.|..+++ ..+..+|.++|||||+|.+......++......+.++.+.|++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~-~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRL-PTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeecc-CCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 35565 9999999999999999999999999775 346678999999999999999999998766778889999999887
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
+++
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 754
No 269
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.66 E-value=0.0006 Score=76.72 Aligned_cols=159 Identities=17% Similarity=0.115 Sum_probs=116.7
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC--CHHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG--DIDG 443 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g--~~~~ 443 (1169)
+...|+++.|+.++.++ .+.|+-.-.+.++.+.++++.|.+.++.+.+.. .+..-+.+.-+.+....| ++.+
T Consensus 112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID-EDSILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhCchhHHH
Confidence 34568887777766654 567888888899999999999999999887654 444444444333444444 6999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH-HHHHH
Q 001060 444 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA-EKARQ 522 (1169)
Q Consensus 444 A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~-e~Ar~ 522 (1169)
|..+|+.+ .+..+..+.++...+.+...+|++++|..++++|+..++ ..+.++++++-+... .|+. +.+.+
T Consensus 186 A~y~f~El-~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~------~~~d~LaNliv~~~~-~gk~~~~~~~ 257 (290)
T PF04733_consen 186 AFYIFEEL-SDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP------NDPDTLANLIVCSLH-LGKPTEAAER 257 (290)
T ss_dssp HHHHHHHH-HCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C------CHHHHHHHHHHHHHH-TT-TCHHHHH
T ss_pred HHHHHHHH-HhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc------CCHHHHHHHHHHHHH-hCCChhHHHH
Confidence 99999997 666777889999999999999999999999999998764 347788888777665 6765 77888
Q ss_pred HHHHHhhhcCCCHHHH
Q 001060 523 ILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 523 i~~kAl~~~p~s~~l~ 538 (1169)
.+.......|.++.+-
T Consensus 258 ~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 258 YLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHCHHHTTTSHHHH
T ss_pred HHHHHHHhCCCChHHH
Confidence 8888777888776443
No 270
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.65 E-value=0.00063 Score=66.39 Aligned_cols=108 Identities=16% Similarity=0.355 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhccCCC---------HHHHHHHHHHHHh
Q 001060 118 VKIRRVYDAFLAEFP---LCYGYWKKYADHEARV----GSMDKVVEVYERAVQGVTYS---------VDIWLHYCIFAIN 181 (1169)
Q Consensus 118 ~~Ar~~ye~~l~~~P---~~~~~W~~~a~~e~~~----~~~e~A~~l~eraL~~~P~s---------~~lw~~y~~~~~~ 181 (1169)
++.++.|+..|..+. +--+.|..|+.+.... +.-.....+++||+..+..+ +.+|+.|+.+..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 456788888888776 6679999999998876 45677889999999988654 677888877532
Q ss_pred hcCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001060 182 TYGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234 (1169)
Q Consensus 182 ~~~~~e~Ar~~~erAl~~-~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L 234 (1169)
.++.+|..+... +|.. ...+|..|+.+++..+++++|..||+++|
T Consensus 81 ------~~~~if~~l~~~~IG~~--~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 ------DPREIFKFLYSKGIGTK--LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ------HHHHHHHHHHHHTTSTT--BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCccHH--HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 788899988773 4554 78999999999999999999999999875
No 271
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.65 E-value=0.0035 Score=68.79 Aligned_cols=157 Identities=13% Similarity=0.036 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH---
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI---HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE--- 461 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l---~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~--- 461 (1169)
..++.++..+.-+...|++++|+..|++++..+ |..+.+ .+.++..+.+.+++++|+..|++. ++++|++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f-i~~~P~~~~~~~ 107 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF-IRLNPTHPNIDY 107 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCcCCCchHH
Confidence 456778888887888999999999999999988 665544 377888889999999999999997 788888654
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHhhhCCCccCchHH----H-------HHHHHHHHHH
Q 001060 462 AIIKHANMERRLG---------------N---LEDAFSLYEQAIAIEKGKEHSQTLPM----L-------YAQYSRFLHL 512 (1169)
Q Consensus 462 ~~~~~a~~e~r~g---------------~---~e~A~~iy~~Al~~~~~~~~~~~~~~----l-------~~~~a~~~~~ 512 (1169)
+++..+.....++ + ..+|...|++.+...|+....+.... + -...++|.++
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666665432222 1 34677899999999986433221111 1 1234677776
Q ss_pred HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 513 VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
.|.+..|..=++..++..|++...-+.+..+...
T Consensus 188 -~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a 221 (243)
T PRK10866 188 -RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA 221 (243)
T ss_pred -cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 8899999999999999999998776666555443
No 272
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.64 E-value=0.00021 Score=62.49 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH 174 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ 174 (1169)
++++++|++++++++..+|.+...|..++.++.+.|++++|++.|+++++..|.+.+.-..
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999887766443
No 273
>PRK15331 chaperone protein SicA; Provisional
Probab=97.63 E-value=0.001 Score=66.59 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=93.6
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
+....++....++--.-..|+++.|..+|.-....++.+++.|+-++.++..++.++.|+..|..|..+. ++++...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccch
Confidence 4566677677776655688999999999999999999999999999999999999999999999999876 789999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLE 461 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 461 (1169)
.|.++...|+.+.|+..|+.+ ++ .|.+..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a-~~-~~~~~~ 139 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELV-NE-RTEDES 139 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHH-Hh-CcchHH
Confidence 999999999999999999997 44 555433
No 274
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.63 E-value=0.00014 Score=82.67 Aligned_cols=75 Identities=25% Similarity=0.266 Sum_probs=65.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
...-|-+++|||++|++||.+||+.|+ |..+ +..+.+|+..|-|||+|.+.+++++|++++...++.|-|.|..+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~---~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENL---EIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEE---EEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 457788999999999999999999996 6663 34566799999999999999999999999888999999999654
No 275
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.63 E-value=0.012 Score=61.98 Aligned_cols=198 Identities=18% Similarity=0.153 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH-H
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL-C 399 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~-~ 399 (1169)
...+...+.+..++..+...+.. ...+.....|...+.+....+++..++..+..++...+.....+..... +
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 66 ALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33455566667777777766541 1234455677788888888899999999999999988777666666666 6
Q ss_pred HHHcCChHHHHHHHHHHHHHhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHHHHcCC
Q 001060 400 MEASGSMDLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANMERRLGN 475 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e~r~g~ 475 (1169)
+...++++.|...|.+++... + .....+..........++++.|...+.++ ....+. ....+...+..+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELD-PELNELAEALLALGALLEALGRYEEALELLEKA-LKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH-HhhCcccchHHHHHhhHHHHHccc
Confidence 788999999999999998743 4 34555555666677889999999999998 677888 68889999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 476 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
++.+...+..++...+. ....+...+..+. ..+.++++...+.++++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPD------NAEALYNLALLLL-ELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcc------cHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999998753 1234555555555 478899999999999999987
No 276
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.12 Score=55.89 Aligned_cols=409 Identities=12% Similarity=0.062 Sum_probs=202.0
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
...+++.+....+.+|.+..+...|+-.+-.. .++..|-.+|+.+...+|.-..|-+.++.-..+.+-+..|..+...
T Consensus 26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 45677788888899999999999999887764 4899999999999999999999999999999999999998877655
Q ss_pred HHhccCCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001060 161 AVQGVTYSVDIWLHYCIFAIN---TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP 237 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~---~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p 237 (1169)
+.. +..|.-.-+++... ..++...+|.+.++.-. .+-.... ..-.-...+.|+++.|.+-|+.+++..
T Consensus 104 ~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~--in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 104 LLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQ--INLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred hcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchh--ccchheeeccccHHHHHHHHHHHHhhc
Confidence 443 23333222222110 34666677777664321 1111111 111222233477888888888888873
Q ss_pred hhhHHHHHHH-HHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCc---chHHHH
Q 001060 238 IQQLDRYFSS-FKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGL---TEAEEL 313 (1169)
Q Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~ 313 (1169)
..+-...|+. +..|....--+.+.-..|.+ .+-+.. -.|+. .+.+.+.++.-...- .....+
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIi--eRG~r~-HPElg-----------IGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEII--ERGIRQ-HPELG-----------IGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHH--Hhhhhc-CCccC-----------ccceeccCchhcccchHHHHHHHH
Confidence 3222222222 22221111000000000000 000000 00110 001111111100000 011122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHH
Q 001060 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYW 393 (1169)
Q Consensus 314 ~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W 393 (1169)
-...+....++...+.++.|.+.+-+.=-|.- ..+|| -..++++-. .-.+++..-..-+.=.|..+|.-.+..
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE---~elDP---vTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE---EELDP---VTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETF 313 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCccc---ccCCc---hhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHH
Confidence 22334445567777888877766654322211 01222 233444322 122333322222223344456555666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH-H
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVK-RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME-R 471 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p-~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e-~ 471 (1169)
-.+..++.++.-++.|.+++..-...--. -++-++..+-.+-..+-..++|.+-++++...+.. .+....+.+. .
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~---kLRklAi~vQe~ 390 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE---KLRKLAIQVQEA 390 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 66666666666677777776432111000 01111111212222234455555554443111000 0111111111 1
Q ss_pred HcC----CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 472 RLG----NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 472 r~g----~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
|.. .+..++.-|+.+++..- | +...++.+.|. ..++..+.++|++..+.+.++
T Consensus 391 r~~~dd~a~R~ai~~Yd~~LE~YL--------P-VlMa~AkiyW~-~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 391 RHNRDDEAIRKAVNEYDETLEKYL--------P-VLMAQAKIYWN-LEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH--------H-HHHHHHHhhcc-ccccHHHHHHHHHHHhhhccc
Confidence 111 13345556666666541 2 45567777777 788888999998888877654
No 277
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.62 E-value=0.0079 Score=60.62 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=111.7
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
+.-|+++...--.+.+..-|. ..-.++++..+...|++.+|+..|+.++.-.--+++.+.+-+++.....++..+|...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 334555554444444544443 3456777888888899999999998887643357788888888888888999999999
Q ss_pred HHHHhhhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHH---
Q 001060 448 YQLVHTETSPG--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ--- 522 (1169)
Q Consensus 448 ~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~--- 522 (1169)
++++ .+.+|. .++-.+.++..+..+|.+..|+..|+.++...|+ +..-+.|+.|+.+ .|...+|+.
T Consensus 147 Le~l-~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-------~~ar~~Y~e~La~-qgr~~ea~aq~~ 217 (251)
T COG4700 147 LEDL-MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-------PQARIYYAEMLAK-QGRLREANAQYV 217 (251)
T ss_pred HHHH-hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-------HHHHHHHHHHHHH-hcchhHHHHHHH
Confidence 9987 566665 3445677788888889999999999999988764 5677788888887 776666544
Q ss_pred -HHHHHhhhcC
Q 001060 523 -ILVDSLDHVQ 532 (1169)
Q Consensus 523 -i~~kAl~~~p 532 (1169)
+++++.+..|
T Consensus 218 ~v~d~~~r~~~ 228 (251)
T COG4700 218 AVVDTAKRSRP 228 (251)
T ss_pred HHHHHHHhcch
Confidence 4444444433
No 278
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.60 E-value=0.00014 Score=78.18 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=59.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCC--eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhC-CCeeeceEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGR--IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS-PIQLAGRQVYI 1107 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~--i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~-~~~i~g~~l~V 1107 (1169)
...+|||||-|.+|++||-+.+...|- +.+++ +..++..|++||||.|...+..++.+-++.. ..+|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmK-FFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMK-FFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhh-hhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 478999999999999999888876652 33332 3557888999999999999999999999884 67889987555
No 279
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.60 E-value=0.00062 Score=66.43 Aligned_cols=107 Identities=25% Similarity=0.363 Sum_probs=74.0
Q ss_pred HHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhccCC---------HHHHHHHHHHH
Q 001060 334 IIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD----GDFNKVVKLYERCLIACANY---------PEYWIRYVLCM 400 (1169)
Q Consensus 334 i~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~----gd~~~a~~lyeraL~~~~~~---------~e~W~~~a~~l 400 (1169)
+..||..|.. +- .....++.|..|+.|.++. +.......+++||+..+..+ ..+|+.|+.+.
T Consensus 5 r~~~e~~i~~-~~----~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~ 79 (126)
T PF08311_consen 5 RQEFEEQIRS-YE----EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS 79 (126)
T ss_dssp HHHHHHHHHC-CG----GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB
T ss_pred HHHHHHHHHH-cc----CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc
Confidence 3446666652 10 1335688999999999765 45667889999999987543 35888888754
Q ss_pred HHcCChHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 401 EASGSMDLAHNALARATHVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
. .+.++|....... -.+.+.+|..||.+++..|++++|.++|.++
T Consensus 80 ~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 80 S------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp S------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred c------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3 5666776554421 1467788888888888888888888888764
No 280
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00093 Score=75.43 Aligned_cols=145 Identities=13% Similarity=0.077 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
..++..|.+.++|..|+..|+++++- +-+....++ ++. ...+... ..+.+.++
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~-l~~~~~~~~-------------------ee~-~~~~~~k------~~~~lNlA 264 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSF-LEYRRSFDE-------------------EEQ-KKAEALK------LACHLNLA 264 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHH-hhccccCCH-------------------HHH-HHHHHHH------HHHhhHHH
Confidence 34566888999999999999999861 001111111 110 0011111 12345556
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH-
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL- 476 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~- 476 (1169)
.++.+.+.+.+|+....++|++. +++....+..++.+...|+++.|+..|+++ +++.|+|-.+-..++.+-.+...+
T Consensus 265 ~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka-~k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 265 ACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKA-LKLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655 666666666666666666666666666666 566666666655555554444333
Q ss_pred HHHHHHHHHHHHhhh
Q 001060 477 EDAFSLYEQAIAIEK 491 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~ 491 (1169)
++.+.+|.+++....
T Consensus 343 ~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 343 EKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccc
Confidence 334666666666543
No 281
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.54 E-value=0.0076 Score=60.75 Aligned_cols=151 Identities=19% Similarity=0.242 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccCCHHHHHHHHHHHH
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCME 401 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~-~~~~~e~W~~~a~~l~ 401 (1169)
...-...+.++.+.++.+ ..+.+-..++.-..+.|++.+++..|++++.- ..+++.+.+.++....
T Consensus 69 ~ldP~R~~Rea~~~~~~A-------------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 69 KLDPERHLREATEELAIA-------------PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred hcChhHHHHHHHHHHhhc-------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 334444555555555543 22456667777778899999999999999865 6788899999999999
Q ss_pred HcCChHHHHHHHHHHHHHhhc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001060 402 ASGSMDLAHNALARATHVFVK--RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 479 (1169)
Q Consensus 402 ~~g~~e~A~~vl~rAl~~~~p--~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 479 (1169)
..+++.+|...++...+.+ | ..+.-++.+++.+-.+|.+..|+..|+.+ +...|+ ....+.|+.++.++|+.+++
T Consensus 136 a~~~~A~a~~tLe~l~e~~-pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a-~~~ypg-~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYN-PAFRSPDGHLLFARTLAAQGKYADAESAFEVA-ISYYPG-PQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred hhccHHHHHHHHHHHhhcC-CccCCCCchHHHHHHHHhcCCchhHHHHHHHH-HHhCCC-HHHHHHHHHHHHHhcchhHH
Confidence 9999999999999998876 4 46889999999999999999999999998 777886 66788899999999998888
Q ss_pred HHHHHHHHHh
Q 001060 480 FSLYEQAIAI 489 (1169)
Q Consensus 480 ~~iy~~Al~~ 489 (1169)
..-|....+.
T Consensus 213 ~aq~~~v~d~ 222 (251)
T COG4700 213 NAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHHH
Confidence 8777655543
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.54 E-value=0.071 Score=62.03 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=99.0
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-hhc----
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC----ANYPEYWIRYVLCMEASGSMDLAHNALARATHV-FVK---- 422 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~----~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~-~~p---- 422 (1169)
.......|..++....+.|.++.|...+.++.... ...+.+-+.++.++...|+.++|...++..+.. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 34456789999999999999999999999988654 226788999999999999999999988887771 111
Q ss_pred ----------------------------cChHHHHHHHHHHHHc------CCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001060 423 ----------------------------RLPEIHLFAARFKEQN------GDIDGARAAYQLVHTETSPGLLEAIIKHAN 468 (1169)
Q Consensus 423 ----------------------------~~~~l~~~~a~~~e~~------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 468 (1169)
....+++.+|.+.... +..+++...|.++ .++.|.....|..++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEA-TKLDPSWEKAWHSWAL 300 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH-HHhChhHHHHHHHHHH
Confidence 1245777888888888 8899999999998 7899999999999998
Q ss_pred HHHHc
Q 001060 469 MERRL 473 (1169)
Q Consensus 469 ~e~r~ 473 (1169)
+..+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 87655
No 283
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.54 E-value=0.00027 Score=83.06 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=71.0
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecC--CCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR--KDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~--~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
++..+.+||+||++.++++.|-..|..||+|..++|+.... ...+.+.||||-|-+..++++|++. +|+.+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44568999999999999999999999999999988765322 2345678999999999999999987 79999999999
Q ss_pred EEeccC
Q 001060 1107 IEERRP 1112 (1169)
Q Consensus 1107 V~~~r~ 1112 (1169)
+-+.++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 988753
No 284
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.50 E-value=0.00017 Score=56.24 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~ 177 (1169)
+.|..++..+.+.|++++|+++|+++|+.+|++.++|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567888888888888888888888888888888888877764
No 285
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.25 Score=67.12 Aligned_cols=209 Identities=14% Similarity=0.180 Sum_probs=130.6
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-------
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR------- 423 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~------- 423 (1169)
++..-.+.|..++.+.+..|.+++|....-.|.+.. -+++.+..|.++...|+...|+.+++..++.+.++
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Confidence 345567899999999999999999998888887765 57899999999999999999999999999776554
Q ss_pred ---------ChHHHHHHHHHHHHcCCH--HHHHHHHHHHhhhcCCChHHHHHHHHHHH------------HHcCCHHH--
Q 001060 424 ---------LPEIHLFAARFKEQNGDI--DGARAAYQLVHTETSPGLLEAIIKHANME------------RRLGNLED-- 478 (1169)
Q Consensus 424 ---------~~~l~~~~a~~~e~~g~~--~~A~~~~~~a~~~~~P~~~~~~~~~a~~e------------~r~g~~e~-- 478 (1169)
...+.+.++.+.+..++. +...+.|..+ .++.|..-+-++.++.++ ++.|++..
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~-~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l 1821 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA-KAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLL 1821 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH-HHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHH
Confidence 123455566777777764 3366778887 677774333222222222 23355555
Q ss_pred -HHHHHHHHHHhhhCCCccCchHHHHHHHHHH---HHH---------HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhH
Q 001060 479 -AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF---LHL---------VSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 479 -A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~---~~~---------~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E 545 (1169)
+.-.|.+++....... -..+|.+..-|.++ .+. ..++.+.--++.+.++++.|.- .++-.|..+.
T Consensus 1822 ~~~~~~~~sl~yg~~~i-yqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y-~f~ta~sQLl 1899 (2382)
T KOG0890|consen 1822 KAIYFFGRALYYGNQHL-YQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTY-QFYTAYSQLL 1899 (2382)
T ss_pred HHHHHHHHHHHhcchhH-HHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcch-HHHHHHHHHH
Confidence 4444457776553221 11244443333332 111 1223455566677778787753 3444777777
Q ss_pred hhCC-ChhH-HHHHHHHHHHH
Q 001060 546 SIQS-SPKQ-IDFLEQLVDKF 564 (1169)
Q Consensus 546 ~~~~-~~~~-~~~~r~l~era 564 (1169)
.+.- ..++ +..+.++..+.
T Consensus 1900 SRicH~~~dV~~vl~~II~~l 1920 (2382)
T KOG0890|consen 1900 SRICHPNQDVARVLKHIIAKL 1920 (2382)
T ss_pred HHHcCCchHHHHHHHHHHHHH
Confidence 6642 2222 34445554443
No 286
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.50 E-value=0.0014 Score=63.14 Aligned_cols=98 Identities=17% Similarity=0.044 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVK--RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIK 465 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p--~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~ 465 (1169)
++++..+..+...|+.++|+.+|++++..-+. ....+++.++..+...|++++|..+++++ ....|+ +..+...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~-~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA-LEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCccccHHHHHH
Confidence 57889999999999999999999999985432 24679999999999999999999999998 566788 7788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAI 489 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~ 489 (1169)
++......|+.++|...+-.++..
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999998877764
No 287
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.48 E-value=0.0005 Score=60.02 Aligned_cols=65 Identities=22% Similarity=0.391 Sum_probs=40.6
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
+.+.+++++++..+++++...|.++.+|+.+|.++...|++++|+..|+++++.. |+.+.+....
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~~ 69 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS-PDDPDARALR 69 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC-CCcHHHHHHH
Confidence 3455666666666666666666666666666666666666666666666666655 5555444443
No 288
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.45 E-value=0.24 Score=59.24 Aligned_cols=32 Identities=19% Similarity=0.019 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhh
Q 001060 580 REELSCVFLEFLGLFGDAQLIKKAEDRHARLF 611 (1169)
Q Consensus 580 ~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~ 611 (1169)
..++-.+|.-|+++-|.++.+.+-|-.+.++.
T Consensus 994 ~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 994 MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 34577888889999999888888877777764
No 289
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.44 E-value=0.012 Score=62.78 Aligned_cols=110 Identities=17% Similarity=0.103 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001060 426 EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 502 (1169)
Q Consensus 426 ~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l 502 (1169)
..++..|....+.|++.+|+..|+++ +...|. ...+++.++..+.+.|+++.|+..|++.+...|.. +..+.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l-~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~---~~~~~A 81 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKL-IDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS---PKADYA 81 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH-HHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-HHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchhhH
Confidence 34444444445556666666666654 333443 23445555666666666666666666666666543 222333
Q ss_pred HHHHHHHHHH----------HhCCHHHHHHHHHHHhhhcCCCHHHHH
Q 001060 503 YAQYSRFLHL----------VSRNAEKARQILVDSLDHVQLSKPLLE 539 (1169)
Q Consensus 503 ~~~~a~~~~~----------~~g~~e~Ar~i~~kAl~~~p~s~~l~~ 539 (1169)
+...+...+. -.+...+|+..|+..+...|++...-.
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~ 128 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE 128 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH
Confidence 3222222211 123467899999999999999974443
No 290
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.39 E-value=0.72 Score=57.31 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001060 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 194 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~e 194 (1169)
+++.+|.+-.+++++.+|+..-+-..-+-...+.|..++|..+++-.-.. +.+.++-+..+.+.....++.++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL-KGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC-CCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 47889999999999999998887777788889999999999666544443 44456666666666657899999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001060 195 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 233 (1169)
Q Consensus 195 rAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~ 233 (1169)
|++...|..-....++..|++-..-..+-+.+.++|+..
T Consensus 102 ~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~ 140 (932)
T KOG2053|consen 102 RANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF 140 (932)
T ss_pred HHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999866653233455556665333233445577777733
No 291
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.39 E-value=0.35 Score=59.92 Aligned_cols=74 Identities=15% Similarity=0.279 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHH----HHHHHHHHHHhccCCH-H
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNK----VVKLYERCLIACANYP-E 391 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~----a~~lyeraL~~~~~~~-e 391 (1169)
+.....+|...++++++...|++++. .+|. .++...|...+.+.+++.+ ++++|+ ..|..+ -
T Consensus 80 Lq~l~~~y~d~~~~d~~~~~Ye~~~~--------~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK----~~pk~~yy 146 (932)
T KOG2053|consen 80 LQFLQNVYRDLGKLDEAVHLYERANQ--------KYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK----NFPKRAYY 146 (932)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh--------hCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCcccch
Confidence 34445567777777777777777766 3444 4444444444444444442 455554 334433 3
Q ss_pred HHHHHHHHHHHc
Q 001060 392 YWIRYVLCMEAS 403 (1169)
Q Consensus 392 ~W~~~a~~l~~~ 403 (1169)
+|--...++...
T Consensus 147 fWsV~Slilqs~ 158 (932)
T KOG2053|consen 147 FWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHHhc
Confidence 566555555443
No 292
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=97.35 E-value=0.00051 Score=67.53 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=72.6
Q ss_pred cchhHhHHHHHHHHhhh-----hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCC-CcceeEeeeeccccCC
Q 001060 720 PAQVGSYFVGQYYQVLQ-----QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN-FTAIEIKTINSLGSWN 793 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~-----~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~-~~~~~i~~~d~q~~~~ 793 (1169)
++++...||+.||..|+ +....|..||..++.++ |+|+.+.+.. ...+++.+.+ .+.++++++||+...+
T Consensus 3 ~tq~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II-~Ng~Pi~~~~---~F~~~w~~~pv~TqH~L~s~D~H~IPG 78 (166)
T PF10429_consen 3 QTQIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKII-WNGTPIAQPT---AFQQTWQQQPVQTQHQLTSFDCHVIPG 78 (166)
T ss_dssp CCCCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEE-ETTEEES-HH---HHHHHHHCCS--EEEEEEEEEEEEETT
T ss_pred cchhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEE-ECCccCCCHH---HHHHHHHhCccceeeeeeeeeeeEeCC
Confidence 56788899999999999 33455888998876555 8999876663 4577889999 6778999999999775
Q ss_pred -CceEEEEEEEEEecCccccceeEEEEEEEee
Q 001060 794 -GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824 (1169)
Q Consensus 794 -~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~ 824 (1169)
|.++|.|+|.+..++. -+-|--|+..|...
T Consensus 79 sgt~i~N~n~KVRFDEs-Grdk~G~~a~l~~~ 109 (166)
T PF10429_consen 79 SGTFIINVNCKVRFDES-GRDKLGEDADLPQP 109 (166)
T ss_dssp TTEEEEEEEEEEEEB-S-SB-TTS-B--TTS-
T ss_pred CCeEEEeeeEEEEecCC-CCCCCCCceeeccc
Confidence 4577789999999876 35667788877653
No 293
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.34 E-value=0.16 Score=57.06 Aligned_cols=248 Identities=17% Similarity=0.079 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHhhccCCcccCCCChh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 001060 326 KAKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 403 (1169)
Q Consensus 326 ~~~~~~~ai~~~e~al~r~~~~v~pl~~~--~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~ 403 (1169)
-.++++.+++.||-++. +|. .+.+--.||.- ++.|+.+-++.+-+++-...|.-+=.|.....-....
T Consensus 132 ~eG~~~~Ar~kfeAMl~---------dPEtRllGLRgLyleA-qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---------DPETRLLGLRGLYLEA-QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred hcCchHHHHHHHHHHhc---------ChHHHHHhHHHHHHHH-HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 34688888999998875 322 12222223333 5779999999999999988888888888877777788
Q ss_pred CChHHHHHHHHHHHHHhh--cc---ChHHHHHHHHH-HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH
Q 001060 404 GSMDLAHNALARATHVFV--KR---LPEIHLFAARF-KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 477 (1169)
Q Consensus 404 g~~e~A~~vl~rAl~~~~--p~---~~~l~~~~a~~-~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e 477 (1169)
|+++.|+++++....... ++ ....-++-+.. ..-.-+...|+..-..+ .++.|+....-..-+..+.+.|+..
T Consensus 202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a-~KL~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA-NKLAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-hhcCCccchHHHHHHHHHHhccchh
Confidence 999999988876554321 21 11222222222 22234566677776676 7889998888888888888999999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH-HHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001060 478 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI-LVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 556 (1169)
Q Consensus 478 ~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i-~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~ 556 (1169)
++-.|++.+.+.+| +|.+|..|.+. + .|+.-..|-- .++.-.+.|++..-....+.-.+.-++ ...
T Consensus 281 Kg~~ilE~aWK~eP-------HP~ia~lY~~a--r-~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e---~~~ 347 (531)
T COG3898 281 KGSKILETAWKAEP-------HPDIALLYVRA--R-SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE---FSA 347 (531)
T ss_pred hhhhHHHHHHhcCC-------ChHHHHHHHHh--c-CCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc---hHH
Confidence 99999999998875 26777777544 3 5654333321 222233567776655444444433333 334
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHH
Q 001060 557 LEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLF-GDAQLIKKAEDRH 607 (1169)
Q Consensus 557 ~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~-Gd~~~i~~v~~R~ 607 (1169)
+|.--|.+....| ++.++-...+.|+-. ||...++....+.
T Consensus 348 ARa~Aeaa~r~~p----------res~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 348 ARAKAEAAAREAP----------RESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHhhhCc----------hhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 4554454444332 334666666666655 7776665555443
No 294
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.11 Score=55.80 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 507 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a 507 (1169)
+...+.++...|++++|.++..+. .++++.-.-+.+..++.+++-|+..++++.+...+ .++-.|-..|.
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----~tLtQLA~awv 180 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED----ATLTQLAQAWV 180 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----HHHHHHHHHHH
Confidence 333445555555666665554442 23444444444455555555555555555554421 11112222232
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH
Q 001060 508 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVF 587 (1169)
Q Consensus 508 ~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~ 587 (1169)
.+.-- .+++..|.-||+..-+..+....+....+-.-+.+++ ++.+..+++.+|.....++ +.+...
T Consensus 181 ~la~g-gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~---~eeAe~lL~eaL~kd~~dp---------etL~Nl 247 (299)
T KOG3081|consen 181 KLATG-GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR---YEEAESLLEEALDKDAKDP---------ETLANL 247 (299)
T ss_pred HHhcc-chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC---HHHHHHHHHHHHhccCCCH---------HHHHHH
Confidence 22111 2245556666666555555555555555555555444 4445555555555544443 234444
Q ss_pred HHHHHhhC-CHHHHHHHHHHHHhhhC
Q 001060 588 LEFLGLFG-DAQLIKKAEDRHARLFL 612 (1169)
Q Consensus 588 l~fe~~~G-d~~~i~~v~~R~~~~~~ 612 (1169)
+-.-...| |.+...+........-+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 44444445 44444444433333333
No 295
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.32 E-value=0.032 Score=64.02 Aligned_cols=178 Identities=17% Similarity=0.100 Sum_probs=118.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHhhccChHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIA----CANYPEYWIRYVLCMEA---SGSMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~----~~~~~e~W~~~a~~l~~---~g~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
+.+.-+.++--+..-.|++..+.+.+..-.. .+..+.+-+.||..|.+ .|+.++|+.++..++......++++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3456677776778888999999999886655 45677899999999998 8999999999999776665778999
Q ss_pred HHHHHHHHHH---------cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH-H---HHHHHHHHHHHhhhCCC
Q 001060 428 HLFAARFKEQ---------NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL-E---DAFSLYEQAIAIEKGKE 494 (1169)
Q Consensus 428 ~~~~a~~~e~---------~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~-e---~A~~iy~~Al~~~~~~~ 494 (1169)
+..+|+++.. ...+++|...|.+++ ++.|+.. .=++++.++...|.. + +.+.+--+.-.....+.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF-e~~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF-EIEPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH-cCCcccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 9999987643 224788999999984 5566533 234555555555542 2 22332211111110111
Q ss_pred ccCchHHHH--HHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 495 HSQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 495 ~~~~~~~l~--~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
........| ..++..... .|++++|...+++++++.|...
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVL-AGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCcch
Confidence 111122344 344444443 8899999999999999876554
No 296
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.29 E-value=0.00066 Score=75.72 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=53.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEee----cCCCcc--------cccEEEEEECCHHHHHHHHHhC
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR----NRKDVV--------GVCYAFVEFEDISGVQNAIQAS 1096 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~----~~~~g~--------~~g~afV~F~~~~~a~~Ai~~~ 1096 (1169)
-++++|.+-|||.+-.-+-|.++|+.||.|+.|+|.-. ....|. .+-||||+|+..+.|.+|.+.+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 47899999999999888999999999999999876322 111222 2468999999999999999874
No 297
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.0003 Score=81.33 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=60.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
..++|+|-|||..|+.++|+.+|+.||+|+.|+. +-..+|..||+|-|..+|++|+++ ++..|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~------t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE------TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc------ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4589999999999999999999999999998542 223568999999999999999988 89999999888
No 298
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.26 E-value=0.0046 Score=71.60 Aligned_cols=69 Identities=12% Similarity=-0.044 Sum_probs=65.3
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGY---WKKYADHEARVGSMDKVVEVYERAVQG 164 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~---W~~~a~~e~~~~~~e~A~~l~eraL~~ 164 (1169)
.+|.+.++|..|+..+..+ +++++|..+|+++|+++|++..+ |++++-.+..+|++++|+..|+++|..
T Consensus 70 ~dP~~a~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5899999999999999985 59999999999999999999865 999999999999999999999999997
No 299
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.26 E-value=0.00012 Score=84.13 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=74.5
Q ss_pred CCCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1028 LDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1028 ~~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
..|.+.+++|+--+.-.++..+|.++|+.+|+|.+|.| |.++.+++++|.|||+|.|.+++..||.++|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVri-I~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRI-IGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEe-eccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 45667899999999999999999999999999999975 77888999999999999999999999999999999999999
Q ss_pred Ee
Q 001060 1108 EE 1109 (1169)
Q Consensus 1108 ~~ 1109 (1169)
..
T Consensus 253 q~ 254 (549)
T KOG0147|consen 253 QL 254 (549)
T ss_pred cc
Confidence 64
No 300
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0026 Score=64.66 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=69.8
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPE-----YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDI 441 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e-----~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~ 441 (1169)
-.+|+++.|..-|.++|..||..+. ++..-+.++.+++.++.|++-..+||++. |.+-.+....|.++++...+
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhH
Confidence 4678899999999999999987654 55555666667777777777777777776 66666666667777777777
Q ss_pred HHHHHHHHHHhhhcCCChHHHHH
Q 001060 442 DGARAAYQLVHTETSPGLLEAII 464 (1169)
Q Consensus 442 ~~A~~~~~~a~~~~~P~~~~~~~ 464 (1169)
++|+.-|+++ ++++|...++.-
T Consensus 185 eealeDyKki-~E~dPs~~ear~ 206 (271)
T KOG4234|consen 185 EEALEDYKKI-LESDPSRREARE 206 (271)
T ss_pred HHHHHHHHHH-HHhCcchHHHHH
Confidence 7777777776 667776544433
No 301
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.25 E-value=0.027 Score=58.28 Aligned_cols=218 Identities=13% Similarity=0.118 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE 391 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e 391 (1169)
+..+++--|+.+|...+-..-|+..|..+|. +.|...+++..++-++...|+++-+...|...++.+|.+.-
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLa--------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y 134 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALA--------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 134 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhh--------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence 3344566677788888888888888888887 77777777777777778889999999999999999998877
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH-HHHHHH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII-KHANME 470 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~-~~a~~e 470 (1169)
.....+..+.--|++.-|.+-+..--+.. |++| ....|..+-++.-+..+|+.-+.+-....+. +.|= ..+.++
T Consensus 135 a~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~---e~WG~~iV~~y 209 (297)
T COG4785 135 AHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDP-FRSLWLYLNEQKLDPKQAKTNLKQRAEKSDK---EQWGWNIVEFY 209 (297)
T ss_pred HHhccceeeeecCchHhhHHHHHHHHhcC-CCCh-HHHHHHHHHHhhCCHHHHHHHHHHHHHhccH---hhhhHHHHHHH
Confidence 76666654544678888877666655544 5544 2223333445666777777654432133222 2221 122233
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
+|++. ...+++++.+...++.. ...+.+.|..+++.... .|++++|..+|+-|+...--+- +=..|+.||+.
T Consensus 210 --LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~-~G~~~~A~~LfKLaiannVynf-VE~RyA~~EL~ 282 (297)
T COG4785 210 --LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS-LGDLDEATALFKLAVANNVYNF-VEHRYALLELS 282 (297)
T ss_pred --Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHH
Confidence 34432 34566666654432111 11223456666766554 9999999999999986542111 11156666654
No 302
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.03 Score=59.05 Aligned_cols=212 Identities=12% Similarity=0.022 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHH------HHHHHHcCChHHHHHHHHHHHHhc-----
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY------LDFIERDGDFNKVVKLYERCLIAC----- 386 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~y------l~~~~~~gd~~~a~~lyeraL~~~----- 386 (1169)
......|+..++++++...+.++++ -..++...|+.- +.+..+...+.++..+|+++....
T Consensus 35 ekAAvafRnAk~feKakdcLlkA~~--------~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 35 EKAAVAFRNAKKFEKAKDCLLKASK--------GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--------HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 3345578899999999999999886 223333344432 223345567788999999987653
Q ss_pred cCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh------HHHHHHHHHHHHcCCHHHHHHHHHHH-----hhh
Q 001060 387 ANYP-EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP------EIHLFAARFKEQNGDIDGARAAYQLV-----HTE 454 (1169)
Q Consensus 387 ~~~~-e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~------~l~~~~a~~~e~~g~~~~A~~~~~~a-----~~~ 454 (1169)
|... ...-+.+..+ ..-+.++|+.+|+|++.++. ... +++-..++++.+...+++|-..+.+- ..+
T Consensus 107 pdtAAmaleKAak~l-env~Pd~AlqlYqralavve-~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~ 184 (308)
T KOG1585|consen 107 PDTAAMALEKAAKAL-ENVKPDDALQLYQRALAVVE-EDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD 184 (308)
T ss_pred cchHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence 2222 2444555544 45678999999999999873 332 34444677888888888887766653 123
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 455 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 455 ~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
..+.....++..+.++.-..++..|..+|+...++..-. . ........++..+ |. .|+.+++.+++...+-.+
T Consensus 185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~-~-sed~r~lenLL~a-yd-~gD~E~~~kvl~sp~~r~--- 257 (308)
T KOG1585|consen 185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL-K-SEDSRSLENLLTA-YD-EGDIEEIKKVLSSPTVRN--- 257 (308)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc-C-hHHHHHHHHHHHH-hc-cCCHHHHHHHHcChHhhh---
Confidence 456666777777777777789999999999987764311 1 1112344555555 34 899999998876444222
Q ss_pred HHHHHHHHHhHhhC
Q 001060 535 KPLLEALIHFESIQ 548 (1169)
Q Consensus 535 ~~l~~~~a~~E~~~ 548 (1169)
+=..|+.+-..+
T Consensus 258 --MDneya~l~kdl 269 (308)
T KOG1585|consen 258 --MDNEYAHLNKDL 269 (308)
T ss_pred --hhHHHHHHhhcc
Confidence 222555555444
No 303
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=97.20 E-value=0.0034 Score=60.17 Aligned_cols=113 Identities=23% Similarity=0.266 Sum_probs=82.3
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCC-cccchhhHHHHHHHHhcCCC---ccee-EeeeeccccCC-CceE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGD-STESASSMLDIHSLVISLNF---TAIE-IKTINSLGSWN-GGVL 797 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~-~~~~~~~~~~I~~~~~~l~~---~~~~-i~~~d~q~~~~-~~il 797 (1169)
..|+.+||..|+ .+++.|..||.+++.+....+. ......+.++|.+++..+.. ...+ +.+++++...+ ...+
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 579999999999 8899999999998766543321 01233455567778877752 2333 57888877543 3466
Q ss_pred EEEEEEEEecC--ccccceeEEEEEEEeeCCeEEEEcceEEe
Q 001060 798 VMVSGSVKTKE--FCRRRKFVQTFFLAPQEKGYFVLNDIFHF 837 (1169)
Q Consensus 798 v~v~G~~~~~~--~~~~~~F~q~F~L~~~~~~y~v~nDifr~ 837 (1169)
+.+.+.+...+ ....+.|.++|.+...+++|.|.+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~ 123 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEec
Confidence 67778887765 23567899999999999999999999976
No 304
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.18 E-value=0.78 Score=55.09 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
.+++++|...+ .-++.-|+.+..|+.++.+-+..|+.--|..+|
T Consensus 457 ~~df~ra~afl-es~~~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 457 DGDFDRATAFL-ESLEMGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred cCchHHHHHHH-HhhccCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 46888886544 456788999999999999999999987666555
No 305
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.17 E-value=0.0032 Score=60.74 Aligned_cols=91 Identities=22% Similarity=0.381 Sum_probs=64.0
Q ss_pred hhcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 001060 353 VTELENWHNYLDFIERD----GDFNKVVKLYERCLIACA---------NYPEYWIRYVLCMEASGSMDLAHNALARATH- 418 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~----gd~~~a~~lyeraL~~~~---------~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~- 418 (1169)
..-++.|..||.|.+.. +.-.....+++||+..+. .+..+|+.|+.+. ++ .+++|.-...
T Consensus 19 dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~ 92 (125)
T smart00777 19 DDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSK 92 (125)
T ss_pred CCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC
Confidence 34478899999998753 344568899999998853 3346899999853 23 3444543332
Q ss_pred -HhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 419 -VFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450 (1169)
Q Consensus 419 -~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 450 (1169)
+- .....+|..||.+++..|++.+|.++|+.
T Consensus 93 ~IG-~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 93 GIG-TKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred Ccc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 12 35677888888888888888888888764
No 306
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.16 E-value=0.023 Score=65.96 Aligned_cols=166 Identities=12% Similarity=0.041 Sum_probs=115.8
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc---------c---------------
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---------R--------------- 423 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p---------~--------------- 423 (1169)
+..+..+-+++-.+||..+|++.+.|+-++. +......++..+|++|++.-.. .
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 4567888889999999999999999988885 3344577888888888764310 0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 501 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~ 501 (1169)
...+...+|.+..+.|+.++|.+.|..+ ++.+|. +..+...++..+..++.+.++..++.+.-++. -+....
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdL-lke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-----lpkSAt 331 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDL-LKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-----LPKSAT 331 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHH-HhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-----CCchHH
Confidence 1223344788899999999999999998 444454 56788899999999999999999988853321 111222
Q ss_pred HHHHHHHHHHHHhCC---------------HHHHHHHHHHHhhhcCCCHHHHHHH
Q 001060 502 LYAQYSRFLHLVSRN---------------AEKARQILVDSLDHVQLSKPLLEAL 541 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~---------------~e~Ar~i~~kAl~~~p~s~~l~~~~ 541 (1169)
+...-+-+..+..++ ...|.+.+.+|++.+|+-+.++...
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 222222222232332 1356788999999999988777543
No 307
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.14 E-value=0.0042 Score=62.90 Aligned_cols=86 Identities=14% Similarity=0.041 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC----
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLA--------QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS---- 150 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~--------~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~---- 150 (1169)
.+.+.++..+..||.|.++++.++..+..+. ..-|++|+.-|+.+|.++|+..+....++..+..++.
T Consensus 9 ~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d 88 (186)
T PF06552_consen 9 HARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPD 88 (186)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCC
Confidence 4566777778888888888887666655442 1345667777777777888777777777666655431
Q ss_pred -------HHHHHHHHHHHHhccCCC
Q 001060 151 -------MDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 151 -------~e~A~~l~eraL~~~P~s 168 (1169)
|++|.+.|++++...|.|
T Consensus 89 ~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 89 TAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444555555555554433
No 308
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.11 E-value=0.0011 Score=51.65 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
+.|..++..+...|++++|+.+|+++|..+|.++++|+.++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 346666666666666666666666666666666666666553
No 309
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.15 Score=54.69 Aligned_cols=183 Identities=17% Similarity=0.135 Sum_probs=128.5
Q ss_pred hhcHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhccCCHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFN-KVVKLYERCLIACANYPEYWIRYV-LCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~-~a~~lyeraL~~~~~~~e~W~~~a-~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
...+...+.+..+++..++.+ ..-.++|..+........+|.-++ .++...+++++|.+.+.+.. ..++...
T Consensus 69 ~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al 142 (299)
T KOG3081|consen 69 ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAAL 142 (299)
T ss_pred CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHH
Confidence 344566777777766555544 455667777666666666776655 55667889999998876632 3345566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGL-----LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 505 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-----~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~ 505 (1169)
-..++.+..+++-|++.+++. .+++-+. ...|++++ -..+.+.+|.=+|+...+..+. .|.+...
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~m-q~ided~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~~~------T~~llnG 212 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKM-QQIDEDATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKTPP------TPLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhcccCC------ChHHHcc
Confidence 667777788888999998886 5544432 22344333 3345688999999988875431 2566666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChh
Q 001060 506 YSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK 552 (1169)
Q Consensus 506 ~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~ 552 (1169)
.+-+... .|++++|..+++.||...++++..+.+++-.-.-+|.+.
T Consensus 213 ~Av~~l~-~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 213 QAVCHLQ-LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HHHHHHH-hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 6666555 999999999999999999999999988888887777543
No 310
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=1 Score=61.50 Aligned_cols=216 Identities=16% Similarity=0.159 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVFV------KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~------p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
.+.|......-....+..+-+-.++|++-... ....++|+..|++....|.++.|...+-+| .+.. ..+++
T Consensus 1629 sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A-~e~r--~~~i~ 1705 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA-KESR--LPEIV 1705 (2382)
T ss_pred chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh-hhcc--cchHH
Confidence 35676555433223333333344555443221 234678888888888888888888877776 3322 46678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccC-----c------hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHhhh
Q 001060 464 IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ-----T------LPMLYAQYSRFLHLVSRN--AEKARQILVDSLDH 530 (1169)
Q Consensus 464 ~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~-----~------~~~l~~~~a~~~~~~~g~--~e~Ar~i~~kAl~~ 530 (1169)
+..|.+++..|+-..|..+++..++..-.+.+.+ . .......+++|... .++ .+.-.+.|..+.+.
T Consensus 1706 ~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~e-s~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1706 LERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEE-SGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHH-hcchhHHHHHHHHHHHHHH
Confidence 8888888888888888888888886543322111 1 11123344455444 443 46678999999999
Q ss_pred cCC--CHHHHHH--HHHhHhhCCChh-----HH-HHHH--HHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH-----H-H
Q 001060 531 VQL--SKPLLEA--LIHFESIQSSPK-----QI-DFLE--QLVDKFLMSNSDSPSTANAAEREELSCVFLEF-----L-G 592 (1169)
Q Consensus 531 ~p~--s~~l~~~--~a~~E~~~~~~~-----~~-~~~r--~l~eral~~~~~~~~~l~~~~~~~i~~~~l~f-----e-~ 592 (1169)
.|. +..+++. |..++....... ++ .++- .-|.+++..+...-. +..-.+...|+++ . +
T Consensus 1785 l~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iy----qsmPRllTLWLD~~t~~~~~e 1860 (2382)
T KOG0890|consen 1785 LPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLY----QSMPRLLTLWLDIGTHISSVE 1860 (2382)
T ss_pred cccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHH----HhhhHHHHHHHhhcchhcccc
Confidence 884 3334433 333333221111 12 2222 224688877644321 2234577788885 2 2
Q ss_pred hhC-------CHHHHHHHHHHHHhhhCC
Q 001060 593 LFG-------DAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 593 ~~G-------d~~~i~~v~~R~~~~~~~ 613 (1169)
+.| +++.+.++-.++.+.+|.
T Consensus 1861 k~~r~ei~s~~~~~in~~i~~~~~~lp~ 1888 (2382)
T KOG0890|consen 1861 KAPRGEIVSKNLKLINSLIEEALEHLPT 1888 (2382)
T ss_pred cCChhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 222 344555556666666654
No 311
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.01 E-value=0.0013 Score=61.80 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=42.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---C---CCeeeceEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---S---PIQLAGRQVY 1106 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~---~~~i~g~~l~ 1106 (1169)
|..|+|.|++..++.++|+++|++||.|..|++.. +-.-|||-|.+.++|+.|++. . +..|.+..+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-------G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-------GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-------T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-------CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 35789999999999999999999999999876421 223799999999999999975 3 5677777766
Q ss_pred EE
Q 001060 1107 IE 1108 (1169)
Q Consensus 1107 V~ 1108 (1169)
++
T Consensus 74 ~~ 75 (105)
T PF08777_consen 74 LE 75 (105)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 312
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.0061 Score=62.06 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=82.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRL----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
+.-+...|++++|..-|.+||.++++-. .-+|...|....+++..+.|+.-+.++ ++++|.+..++.+++.++.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa-iel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKA-IELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh-HhcCchhHHHHHHHHHHHHh
Confidence 3335578999999999999999985432 345666788888999999999999998 89999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhC
Q 001060 473 LGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 473 ~g~~e~A~~iy~~Al~~~~~ 492 (1169)
+..+++|+.-|++.++..|.
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999874
No 313
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.96 E-value=0.0042 Score=71.90 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=65.6
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY---WIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~---W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
.+|.....|.+++..+...|++++|+..|+++|..+|++.+. |+.++.+|..+|++++|+..|++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999999965 9999999999999999999999999863
No 314
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0074 Score=63.28 Aligned_cols=100 Identities=11% Similarity=0.074 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001060 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 194 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~e 194 (1169)
+.+..|+.+|-++|.+.|+...||.+-|..+++.++++.+..-+.|+|+++|+.+...+.+..+.+ ....+++++..+.
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l-~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL-QSKGYDEAIKVLQ 102 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH-hhccccHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999888 6778999999999
Q ss_pred HHHHhcCCCC--CCHHHHHHHHH
Q 001060 195 RGLAYVGTDY--LSFPLWDKYIE 215 (1169)
Q Consensus 195 rAl~~~g~d~--~s~~lw~~y~~ 215 (1169)
||......+. ....||..+..
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~ 125 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRD 125 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHH
Confidence 9976543222 24577777666
No 315
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.90 E-value=0.0007 Score=79.26 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=72.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
...+|||+|||...++.+++++...||+++... ++.+..+|.++||||.+|.+......|+.. ||..++++.|.|..+
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~-lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFR-LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhhe-eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 457899999999999999999999999999876 467888899999999999999999999987 899999999999766
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
-.
T Consensus 367 ~~ 368 (500)
T KOG0120|consen 367 IV 368 (500)
T ss_pred hc
Confidence 43
No 316
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.17 Score=53.55 Aligned_cols=206 Identities=15% Similarity=0.074 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-------cCChHHHHHHHHHHHHHhhccChHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-------SGSMDLAHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~-------~g~~e~A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
.++..-.-.++..++++++...++++....-++.. |+..+..++. ...+.++..+|+||+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs-lfhAAKayEqaamLake~~klsEvvdl~eKAs~----------- 99 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS-LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE----------- 99 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------
Confidence 33444444445567777777777777765544433 3333333332 2233444444444443
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~ 509 (1169)
++.++|..+-|-..++++. .+. ..-+.++|+.+|.+++......+....-.+++-..++.
T Consensus 100 ----lY~E~GspdtAAmaleKAa---------------k~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 100 ----LYVECGSPDTAAMALEKAA---------------KAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred ----HHHHhCCcchHHHHHHHHH---------------HHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 3446777777777777762 121 23477899999999998775433322234567777788
Q ss_pred HHHHhCCHHHHHHHHHHHhhh------cCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 001060 510 LHLVSRNAEKARQILVDSLDH------VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREEL 583 (1169)
Q Consensus 510 ~~~~~g~~e~Ar~i~~kAl~~------~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i 583 (1169)
+.+ ...+.+|-..+.+-... .+.-...+...+.+.+-.++ ...+..||....... ..+.+++ ...
T Consensus 160 lVr-l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D---yv~aekc~r~~~qip----~f~~sed-~r~ 230 (308)
T KOG1585|consen 160 LVR-LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD---YVQAEKCYRDCSQIP----AFLKSED-SRS 230 (308)
T ss_pred hhh-hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH---HHHHHHHhcchhcCc----cccChHH-HHH
Confidence 776 66677776655543321 23223444444444443333 334566665543321 1122232 246
Q ss_pred HHHHHHHHHhhCCHHHHHHHH
Q 001060 584 SCVFLEFLGLFGDAQLIKKAE 604 (1169)
Q Consensus 584 ~~~~l~fe~~~Gd~~~i~~v~ 604 (1169)
+++.|.+.. -||.+.+.+|.
T Consensus 231 lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHhc-cCCHHHHHHHH
Confidence 667777663 48898888876
No 317
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.88 E-value=0.0015 Score=68.41 Aligned_cols=67 Identities=24% Similarity=0.400 Sum_probs=59.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
..+.++|.|++..+.+.+|+++|.++|.+....+ .++++||+|++.+++..|+.. ++..+.|+.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh---------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3488999999999999999999999999954221 347999999999999999988 799999999999
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.84 E-value=0.0038 Score=68.14 Aligned_cols=95 Identities=17% Similarity=0.111 Sum_probs=82.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
-+.-+.++|++++|+++|.+++... |.++-++...|..+.+...+.-|..-+..+ +.++-.+..+|.+++..-..+|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A-iaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAA-IALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHHHHHHHHHHhh
Confidence 3445667899999999999999877 788888988888888888888888888887 77788888899999999889999
Q ss_pred HHHHHHHHHHHHHhhhC
Q 001060 476 LEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~ 492 (1169)
+.+|..-|+.+|.+.|.
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 99999999999999874
No 319
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.81 E-value=0.13 Score=57.10 Aligned_cols=239 Identities=14% Similarity=0.109 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYP-----EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPE 426 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~-----e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~ 426 (1169)
+.+.++..-.++..++.+++.+-.-++..-...+ ....-++..+...+.++.+++.|+.|+.+.... .-.
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3444444444555566677766666665543333 233445555556677889999999998765221 124
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC----Ch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSP----GL------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 496 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P----~~------~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~ 496 (1169)
++..++.+.-+..|+++|.-...++ .++.- ++ ..+.+.++..++.+|.+-.|.++.++|.++.-...+.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA-~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKA-AELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhH-HHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 6777889999999999988776665 22211 11 2245667777888899999999999988765322222
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCC
Q 001060 497 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTAN 576 (1169)
Q Consensus 497 ~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~ 576 (1169)
.....-..-+++++.. .|+.+.|..-|+.|.... ..+-+.+..++...+- -++++..-..+.-..
T Consensus 243 a~~arc~~~~aDIyR~-~gd~e~af~rYe~Am~~m---~~~gdrmgqv~al~g~-------Akc~~~~r~~~k~~~---- 307 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRS-RGDLERAFRRYEQAMGTM---ASLGDRMGQVEALDGA-------AKCLETLRLQNKICN---- 307 (518)
T ss_pred HHHHHHHHHHHHHHHh-cccHhHHHHHHHHHHHHH---hhhhhhHHHHHHHHHH-------HHHHHHHHHhhcccc----
Confidence 2222334567888554 999999999999887543 3344455555544332 222222111111000
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhC
Q 001060 577 AAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 612 (1169)
Q Consensus 577 ~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~ 612 (1169)
=...++-.+.++.....|..-.+.|+.=|...++.
T Consensus 308 -Crale~n~r~levA~~IG~K~~vlK~hcrla~iYr 342 (518)
T KOG1941|consen 308 -CRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYR 342 (518)
T ss_pred -cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 12457889999999999999999999999988874
No 320
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.81 E-value=0.016 Score=62.72 Aligned_cols=93 Identities=18% Similarity=0.154 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHhhhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001060 438 NGDIDGARAAYQLVHTETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 514 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~---~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~ 514 (1169)
.|++..|...|..- ++..|+.. .+++=++.....+|++++|..+|..++...|. ++..|+.++.++..+.+ +
T Consensus 154 sgdy~~A~~~F~~f-i~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~---s~KApdallKlg~~~~~-l 228 (262)
T COG1729 154 SGDYAEAEQAFQAF-IKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK---SPKAPDALLKLGVSLGR-L 228 (262)
T ss_pred cCCHHHHHHHHHHH-HHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC---CCCChHHHHHHHHHHHH-h
Confidence 34444444444442 33344321 22333344444455555555555555544433 23334445555555444 5
Q ss_pred CCHHHHHHHHHHHhhhcCCCH
Q 001060 515 RNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 515 g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
|+.++|+.+|+..++.+|++.
T Consensus 229 ~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 229 GNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred cCHHHHHHHHHHHHHHCCCCH
Confidence 555555555555555555443
No 321
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.014 Score=63.27 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=65.0
Q ss_pred HHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHc
Q 001060 400 MEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANMERRL 473 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~ 473 (1169)
+.+.|++..|...|..-++.+ |+ .++.++-++..+..+|++++|..+|..+ .+-.|+ -++..++++.+..++
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~-~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARV-VKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHH-HHhCCCCCCChHHHHHHHHHHHHh
Confidence 445677777777777777777 43 3566777777777777777777777776 344444 456677888888888
Q ss_pred CCHHHHHHHHHHHHHhhhC
Q 001060 474 GNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~~ 492 (1169)
|+.++|+..|+++++..|+
T Consensus 229 ~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 229 GNTDEACATLQQVIKRYPG 247 (262)
T ss_pred cCHHHHHHHHHHHHHHCCC
Confidence 8888888888888877764
No 322
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.79 E-value=1 Score=54.16 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=37.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 125 DAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 125 e~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
..+++.+|. +++|..+|+.-+..-.++.|+..|-||-.. .-+.+-..+..+.
T Consensus 683 ~qfiEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY--~Gik~vkrl~~i~ 734 (1189)
T KOG2041|consen 683 IQFIEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDY--AGIKLVKRLRTIH 734 (1189)
T ss_pred HHHHhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccc--cchhHHHHhhhhh
Confidence 456777885 699999999988888899999999888542 2444444444443
No 323
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.76 E-value=0.27 Score=51.18 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=134.2
Q ss_pred CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ 449 (1169)
Q Consensus 370 gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~ 449 (1169)
.+-+||.-+|||.. ++...|-..-|+.-|..++.+. |+.+.++..++.++...|+++.|.++|+
T Consensus 60 ~~eeRA~l~fERGv---------------lYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFd 123 (297)
T COG4785 60 TDEERAQLLFERGV---------------LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFD 123 (297)
T ss_pred ChHHHHHHHHHhcc---------------hhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhh
Confidence 34556776777654 4455566667788888888888 8999999999999999999999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH-HHHh
Q 001060 450 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL-VDSL 528 (1169)
Q Consensus 450 ~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~-~kAl 528 (1169)
.. .+++|.+--+.++++....=-|++.-|..-+.+..+.+|.+ | .-.+|..+... .-+..+|+.-+ +++-
T Consensus 124 s~-~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D---P-fR~LWLYl~E~----k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 124 SV-LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND---P-FRSLWLYLNEQ----KLDPKQAKTNLKQRAE 194 (297)
T ss_pred hH-hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC---h-HHHHHHHHHHh----hCCHHHHHHHHHHHHH
Confidence 97 89999988888887776666789988888887777776532 1 22466554322 34577776544 4444
Q ss_pred hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHH---hhCCHHHHHHHHH
Q 001060 529 DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLG---LFGDAQLIKKAED 605 (1169)
Q Consensus 529 ~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~---~~Gd~~~i~~v~~ 605 (1169)
.+ +...| .|...+.-+|.-. ...+++++..-..++. .-.+.+.+.|...-+ ..|+++.+..+.+
T Consensus 195 ~~---d~e~W-G~~iV~~yLgkiS----~e~l~~~~~a~a~~n~-----~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 195 KS---DKEQW-GWNIVEFYLGKIS----EETLMERLKADATDNT-----SLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred hc---cHhhh-hHHHHHHHHhhcc----HHHHHHHHHhhccchH-----HHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 33 34555 3333443333211 2456777655433322 223345555554443 4588888888877
Q ss_pred HHHhh
Q 001060 606 RHARL 610 (1169)
Q Consensus 606 R~~~~ 610 (1169)
-....
T Consensus 262 Laian 266 (297)
T COG4785 262 LAVAN 266 (297)
T ss_pred HHHHH
Confidence 66543
No 324
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.76 E-value=0.042 Score=54.11 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
-++.-|.-..+.|++++|++.|+.+ ....|. ...+.+.++..+.+.+++++|+..|++.|.++|.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L-~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEAL-DTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-HhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3333444444555555555555554 333433 2234444455555566666666666666666654
No 325
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.75 E-value=0.0041 Score=55.08 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCC-ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 457 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE-HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 457 P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~-~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
|+...++..++.++.++|++++|+.+|++++.+...-. ..+.....+.+++.+... .|++++|++.|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence 34566788899999999999999999999998742111 112234457788888776 999999999999999764
No 326
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.72 E-value=0.0083 Score=55.08 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=58.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHhc--CCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee----ceEEE
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQN--FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA----GRQVY 1106 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~--~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~----g~~l~ 1106 (1169)
++|-|+|||...|.++|.+++.. .|..-.+= +..|-.++-+.|||||.|.+++.+.+-.+. +|.... .+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~Y-LPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFY-LPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEE-eeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68999999999999999998864 34443332 233556777899999999999999988876 776664 35567
Q ss_pred EEeccC
Q 001060 1107 IEERRP 1112 (1169)
Q Consensus 1107 V~~~r~ 1112 (1169)
|..++-
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 777654
No 327
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.70 E-value=0.019 Score=54.62 Aligned_cols=87 Identities=20% Similarity=0.155 Sum_probs=43.0
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC----hHHHHHHHHHHHHHcCCH
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~----~~~~~~~~a~~e~r~g~~ 476 (1169)
...|+++.|++.|.+++.+. |..+.+|...++.+.-+|+.++|+.-++++ +++.-+ -...+...+.+++.+|+-
T Consensus 54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~A-leLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKA-LELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHH-HHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 33455555555555555544 455555555555555555555555555554 333221 123344455555555555
Q ss_pred HHHHHHHHHHHHh
Q 001060 477 EDAFSLYEQAIAI 489 (1169)
Q Consensus 477 e~A~~iy~~Al~~ 489 (1169)
+.|+.-|+.|-++
T Consensus 132 d~AR~DFe~AA~L 144 (175)
T KOG4555|consen 132 DAARADFEAAAQL 144 (175)
T ss_pred HHHHHhHHHHHHh
Confidence 5555555554444
No 328
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.67 E-value=0.0028 Score=45.48 Aligned_cols=32 Identities=34% Similarity=0.794 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001060 149 GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 180 (1169)
Q Consensus 149 ~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~ 180 (1169)
|++++|+.+|+++|..+|.+.++|+.|+.|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 35666777777777777777777777777654
No 329
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.19 Score=53.73 Aligned_cols=137 Identities=14% Similarity=0.160 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh---hhcC--CChHHHHHHH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH---TETS--PGLLEAIIKH 466 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~---~~~~--P~~~~~~~~~ 466 (1169)
+-+.|+.++.-.+.+.-....+.+.++.+++..+.+.-.++++..+.||++.|...|++.- ..++ -....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3445556666666777778888888888878889999999999999999999999998541 1111 2244567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
+.++...+++..|...|.+++..++.+ +..-.+.|-++.. .|+...|.+.++.+++..|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~------~~a~NnKALcllY-lg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRN------AVANNNKALCLLY-LGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCc------hhhhchHHHHHHH-HHHHHHHHHHHHHHhccCCccc
Confidence 888888899999999999999887532 3344455555555 8899999999999999998753
No 330
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.64 E-value=0.024 Score=53.90 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=79.3
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHcCCHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDID 442 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~a~~~e~~g~~~ 442 (1169)
.-+.|+.+.++..|.++|..||..+.++..-++.+..+|+.++|++-+++|+++.-+.- -..|...+.++...|+.+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 35679999999999999999999999999999999999999999999999999774432 246777889999999999
Q ss_pred HHHHHHHHHhhhcCC
Q 001060 443 GARAAYQLVHTETSP 457 (1169)
Q Consensus 443 ~A~~~~~~a~~~~~P 457 (1169)
.||.-|+.+ .++..
T Consensus 133 ~AR~DFe~A-A~LGS 146 (175)
T KOG4555|consen 133 AARADFEAA-AQLGS 146 (175)
T ss_pred HHHHhHHHH-HHhCC
Confidence 999999998 45444
No 331
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.63 E-value=0.019 Score=55.39 Aligned_cols=104 Identities=17% Similarity=0.321 Sum_probs=74.8
Q ss_pred HHHHHHHHH-H--hCCCCHHHHHHHHHHHHHh---C-CHHHHHHHHHHHHhccCCC---------HHHHHHHHHHHHhhc
Q 001060 120 IRRVYDAFL-A--EFPLCYGYWKKYADHEARV---G-SMDKVVEVYERAVQGVTYS---------VDIWLHYCIFAINTY 183 (1169)
Q Consensus 120 Ar~~ye~~l-~--~~P~~~~~W~~~a~~e~~~---~-~~e~A~~l~eraL~~~P~s---------~~lw~~y~~~~~~~~ 183 (1169)
.|+.|++-| . ...+--..|..|+.+.... | .-..-..+++||++.+-++ +.+|+.|+++.
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---- 79 (125)
T smart00777 4 QRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---- 79 (125)
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc----
Confidence 456677666 2 2233358999999987753 2 3446778889998876322 68898888763
Q ss_pred CCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001060 184 GDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 232 (1169)
Q Consensus 184 ~~~e~Ar~~~erAl~~-~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r 232 (1169)
++ .+.+|..+... +|. ....+|..|+.+++..|++.+|..||++
T Consensus 80 ~d---p~~if~~L~~~~IG~--~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DE---PRELFQFLYSKGIGT--KLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CC---HHHHHHHHHHCCcch--hhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 33 46678877652 343 3678999999999999999999999975
No 332
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.62 E-value=0.053 Score=59.79 Aligned_cols=83 Identities=25% Similarity=0.276 Sum_probs=62.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCC---------------------------------------
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD--------------------------------------- 1072 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~--------------------------------------- 1072 (1169)
.+-.|.|++|-..+++.+|-+.++.||+|..+...-.++.-
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i 109 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCI 109 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhh
Confidence 45678999999999999999999999999876432211110
Q ss_pred ----------------------------------------------cccccEEEEEECCHHHHHHHHHh-CCCeee--ce
Q 001060 1073 ----------------------------------------------VVGVCYAFVEFEDISGVQNAIQA-SPIQLA--GR 1103 (1169)
Q Consensus 1073 ----------------------------------------------g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~--g~ 1103 (1169)
.+.---|.|||++.+.|++|..+ ||..|- -.
T Consensus 110 ~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCC 189 (494)
T KOG1456|consen 110 ERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCC 189 (494)
T ss_pred ccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccce
Confidence 12233689999999999999987 776663 35
Q ss_pred EEEEEeccCCC
Q 001060 1104 QVYIEERRPNT 1114 (1169)
Q Consensus 1104 ~l~V~~~r~~~ 1114 (1169)
.|+||++++.+
T Consensus 190 TLKIeyAkP~r 200 (494)
T KOG1456|consen 190 TLKIEYAKPTR 200 (494)
T ss_pred eEEEEecCcce
Confidence 79999998654
No 333
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.41 Score=50.47 Aligned_cols=134 Identities=20% Similarity=0.267 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhcCCC------hH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQN-GDIDGARAAYQLVHTETSPG------LL 460 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p-----~~~~l~~~~a~~~e~~-g~~~~A~~~~~~a~~~~~P~------~~ 460 (1169)
+...+.++ +..+.++|.++++++++|+.. .-...|+..|.+++.- .+++.|+..|+++ -+...+ --
T Consensus 77 YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~A-ae~yk~ees~ssAN 154 (288)
T KOG1586|consen 77 YVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQA-AEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH-HHHHcchhhhhhHH
Confidence 33334444 345788888888888888732 1223455677777754 8899999999987 232222 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH-H-----HHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML-Y-----AQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l-~-----~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
..+++.+.+-..++++.+|+.+|++.....-++ +.+ | ..-+.+......+.=.++..+++..+.+|.-
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n------~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN------NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 346778888888899999999999988764321 222 2 1112222222466777778888888877753
No 334
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.53 E-value=0.032 Score=54.86 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
+..-+.-..+.|+++.|+..|+......|.. ...-+.++..+.+.+++++|+..++|-++++ |.++.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~hp~ 82 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PTHPN 82 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCCC
Confidence 3444444456677777777777777666532 2344444444556677777777777777776 44443
No 335
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.52 E-value=1.8 Score=50.32 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=92.8
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCC----
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSP---- 457 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P---- 457 (1169)
.......|+.++.+..+.|.++.|...+.++...... ..+.+.+.++++++..|+-.+|...++..+. .+..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3455689999999999999999999999998874422 2678999999999999999999998877532 1110
Q ss_pred ----------------------------ChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001060 458 ----------------------------GLLEAIIKHANMERRL------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 503 (1169)
Q Consensus 458 ----------------------------~~~~~~~~~a~~e~r~------g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~ 503 (1169)
....+++.++.+.... +..+++...|..++...+. ....|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~k~~ 295 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS------WEKAW 295 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh------HHHHH
Confidence 0224578888888777 8899999999999998753 24467
Q ss_pred HHHHHHHHH
Q 001060 504 AQYSRFLHL 512 (1169)
Q Consensus 504 ~~~a~~~~~ 512 (1169)
..|+.+...
T Consensus 296 ~~~a~~~~~ 304 (352)
T PF02259_consen 296 HSWALFNDK 304 (352)
T ss_pred HHHHHHHHH
Confidence 777777554
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.52 E-value=0.012 Score=64.26 Aligned_cols=106 Identities=17% Similarity=0.070 Sum_probs=85.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 511 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~ 511 (1169)
+.-+.++|.+++|+.+|.+. +.+.|.++-.+.+++..+.++..|..|+.-++.|+.++. .+-..|..-+.. +
T Consensus 104 GN~yFKQgKy~EAIDCYs~~-ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KAYSRR~~A-R 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTA-IAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKAYSRRMQA-R 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhh-hccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHHHHHHHHH-H
Confidence 44556899999999999998 889999999999999999999999999999999999873 122233333222 2
Q ss_pred HHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhH
Q 001060 512 LVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 512 ~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E 545 (1169)
..+|++++|.+-++.+|.+.|++-.|-..++.+.
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 2488999999999999999999877776665544
No 337
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.50 E-value=0.0027 Score=46.37 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=21.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001060 124 YDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 155 (1169)
Q Consensus 124 ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 155 (1169)
|+++|+.+|++..+|..++.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
No 338
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=2.6 Score=49.05 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=105.6
Q ss_pred HHcCChHHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH--HHHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACA----------NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE--IHLFAARF 434 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~----------~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~--l~~~~a~~ 434 (1169)
.-.|++.+++........-|- +.+.+.+-++.|-..-+-++.|..-|..|++.....+-. +-..+|..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 456888877766666555543 334566667777667788999999999988765222222 22346777
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGL----------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~----------~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
+.+.|+-+.-.++++.+ .|.+ ..+++.++.+...++++.+|+..+.+.++... .++...+-..+.
T Consensus 414 YL~~~~~ed~y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman-aed~~rL~a~~L 488 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN-AEDLNRLTACSL 488 (629)
T ss_pred HHHhccHHHHHHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-hhhHHHHHHHHH
Confidence 78888766666665553 4431 23578888899999999999999999998763 222111111222
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 505 QYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 505 ~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
-+....+...|+..+++++.+-++++.
T Consensus 489 vLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHHHHHHhcchHHHHhccchHHHHH
Confidence 222233345899999999999988854
No 339
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.21 Score=52.60 Aligned_cols=148 Identities=17% Similarity=0.133 Sum_probs=87.6
Q ss_pred CChHHHHHHHHHHHHhccC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHH
Q 001060 370 GDFNKVVKLYERCLIACAN------YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 443 (1169)
Q Consensus 370 gd~~~a~~lyeraL~~~~~------~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~ 443 (1169)
+.+++|..+|.|+--.... --+.+...+.+..+.|+-.+|...|-.|- ..+ +..+..+
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~---------------~cy-kk~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAA---------------NCY-KKVDPEE 91 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH---------------HHh-hccChHH
Confidence 4677777777776433211 11234444444444444444443333333 222 3446777
Q ss_pred HHHHHHHHhhhcCCChHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 444 ARAAYQLVHTETSPGLLE------AIIKHANMERRL-GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 444 A~~~~~~a~~~~~P~~~~------~~~~~a~~e~r~-g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
|..+++++ +++..+... .++..+.++... .++++|+..|+.|-+...+.+.....-.-++..+.+... .++
T Consensus 92 Av~cL~~a-ieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~-leq 169 (288)
T KOG1586|consen 92 AVNCLEKA-IEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ-LEQ 169 (288)
T ss_pred HHHHHHHH-HHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH-HHH
Confidence 77777776 444433222 244566665544 789999999999999877544321112235566666555 888
Q ss_pred HHHHHHHHHHHhhhcCCCH
Q 001060 517 AEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 517 ~e~Ar~i~~kAl~~~p~s~ 535 (1169)
+.+|+.+|++.....-++.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHhccch
Confidence 9999999999888765554
No 340
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.44 E-value=0.004 Score=75.72 Aligned_cols=24 Identities=21% Similarity=0.023 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHHHHhhCCHHH
Q 001060 576 NAAEREELSCVFLEFLGLFGDAQL 599 (1169)
Q Consensus 576 ~~~~~~~i~~~~l~fe~~~Gd~~~ 599 (1169)
+...-..++-.|+.--..||+++.
T Consensus 651 pgwa~i~~L~~~ll~~~~fg~~~~ 674 (1282)
T KOG0921|consen 651 PGWAEIMTLCNRLLEHQEFGQANK 674 (1282)
T ss_pred CchHHhhhhhhhhhhhhhhccchh
Confidence 344444555566655566666543
No 341
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.36 E-value=0.0064 Score=64.20 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=47.1
Q ss_pred HHHHHHh-cCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1049 EIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1049 ~L~~~F~-~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
+|-..|+ +||+|+.+ .|.+.-.-..+|-++|.|...++|++|++. |+--|+|++|..++
T Consensus 84 d~f~E~~~kygEiee~--~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEEL--NVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHhhhhhhh--hhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 4444444 99999985 355554456788999999999999999987 89999999998865
No 342
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.35 E-value=0.39 Score=51.83 Aligned_cols=167 Identities=16% Similarity=0.100 Sum_probs=102.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH---HH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE---IH 428 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~---e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~---l~ 428 (1169)
....|..-+.-+.+.|++++|+..|+.+....|..+ .+-+.++..+.+.++++.|+..++|-+.++ |.++. ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChhHHH
Confidence 356677777777889999999999999998877544 566677777778899999999999999988 54443 23
Q ss_pred HHHHHHHHH-----cCCHHHHHHH---HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchH
Q 001060 429 LFAARFKEQ-----NGDIDGARAA---YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 500 (1169)
Q Consensus 429 ~~~a~~~e~-----~g~~~~A~~~---~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~ 500 (1169)
++.+..... ..|...++.. |+.. +...|+..-+ ..|..-+..+.... .
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~-i~ryPnS~Ya--------------~dA~~~i~~~~d~L---------A 167 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKEL-VQRYPNSRYA--------------PDAKARIVKLNDAL---------A 167 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHH-HHHCCCCcch--------------hhHHHHHHHHHHHH---------H
Confidence 333322221 1222223333 3332 4445543211 11111111111110 1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 501 MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 501 ~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
..=...++|..+ .|.+-.|..-++..++..|+.....+++..++..
T Consensus 168 ~~Em~IaryY~k-r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ea 213 (254)
T COG4105 168 GHEMAIARYYLK-RGAYVAAINRFEEVLENYPDTSAVREALARLEEA 213 (254)
T ss_pred HHHHHHHHHHHH-hcChHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 112345677666 8889999999999999999888777776666644
No 343
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.31 E-value=0.013 Score=51.79 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACA-------NYPEYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~-------~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
..+..++..+...|++++|+..|++|+.... ....++..++.++...|++++|++.|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4455666666666777777777777765521 112355666666666666666666666666554
No 344
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.29 E-value=0.0053 Score=43.33 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001060 150 SMDKVVEVYERAVQGVTYSVDIWLHYCIFA 179 (1169)
Q Consensus 150 ~~e~A~~l~eraL~~~P~s~~lw~~y~~~~ 179 (1169)
.+++|+.||+|.|..+| ++..|+.|++|+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhh
Confidence 45666777777766664 566677776664
No 345
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.26 E-value=0.029 Score=56.96 Aligned_cols=65 Identities=8% Similarity=-0.034 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 001060 372 FNKVVKLYERCLIACANYPEYWIRYVLCMEASGS----------MDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437 (1169)
Q Consensus 372 ~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~----------~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~ 437 (1169)
++.+++.++.....+|.+.+.+++++..|..+.+ +++|+.-|+.||.+. |+...++..++..+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence 4568888999999999999999999988876532 355667777777777 6666666666655543
No 346
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.14 E-value=0.0081 Score=61.58 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=49.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1100 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i 1100 (1169)
...++||.||..++++++|+.+|+.|--...++ ++.+ . +-+.|||+|++.+.|..|+.. .|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~--~~~~-~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILK--IRAR-G--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEE--EecC-C--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 356899999999999999999999998776533 4443 2 346899999999988888865 35444
No 347
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.12 E-value=1.7 Score=48.66 Aligned_cols=116 Identities=9% Similarity=0.007 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH-----HHHHHHHHHHHhhcCCHHHHHHH
Q 001060 120 IRRVYDAFLAEFPLC--YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV-----DIWLHYCIFAINTYGDPETIRRL 192 (1169)
Q Consensus 120 Ar~~ye~~l~~~P~~--~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~-----~lw~~y~~~~~~~~~~~e~Ar~~ 192 (1169)
|....+-+++..-.. ...+++++.-..+.-++.+++.+..-++..-.... ........-.. -.+.++++.+.
T Consensus 66 a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Les 144 (518)
T KOG1941|consen 66 AVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALES 144 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHH
Confidence 334444444433222 45667777777788888899888888887532222 11111111111 23567889999
Q ss_pred HHHHHHhcC---CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 193 FERGLAYVG---TDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 193 ~erAl~~~g---~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
||.|+++.. .......+...+..+.-..++++++.-.-.+++++
T Consensus 145 fe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 145 FEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred HHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 999998642 22234566677777777778888877666666654
No 348
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.10 E-value=0.035 Score=69.49 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHhcCCCeeeee---EEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1042 PSTVTAFEIEEEFQNFGRIKPDG---VFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1042 p~~~t~~~L~~~F~~~G~i~~~~---i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
-..++..+|-.++..-+.|..-. |.+.+ .|.||+-.. ..+...+.. ++..+.|+.|.|+..+
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~-------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFA-------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeC-------CceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 35788889988887666564422 12222 488999865 446666665 6889999999999865
No 349
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.08 E-value=0.0062 Score=44.45 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=23.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCChHHHH
Q 001060 379 YERCLIACANYPEYWIRYVLCMEASGSMDLAH 410 (1169)
Q Consensus 379 yeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~ 410 (1169)
|+|+|+.+|.+++.|+.+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67777777777777777777777777777664
No 350
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.015 Score=67.15 Aligned_cols=69 Identities=26% Similarity=0.260 Sum_probs=59.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHh-cCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeee
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLA 1101 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~-~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~ 1101 (1169)
+.++||||+||--++.++|..+|. -||-|..++|-+ |.+-+-++|-|-|+|.+..+..+||.+.-++|.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDt-D~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~ 438 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDT-DPKLKYPKGAGRVTFSNQQAYIKAISARFVQLD 438 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEecc-CcccCCCCCcceeeecccHHHHHHHhhheEEEe
Confidence 569999999999999999999998 799999998744 444556889999999999999999998655544
No 351
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.00 E-value=0.01 Score=42.38 Aligned_cols=31 Identities=35% Similarity=0.773 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 146 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~ 146 (1169)
++++++.+|++++..+|.+..+|..|++++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 6789999999999999999999999999885
No 352
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=1.2 Score=47.93 Aligned_cols=212 Identities=14% Similarity=0.052 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhccCCH
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD-GDFNKVVKLYERCLIACANYP 390 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~-gd~~~a~~lyeraL~~~~~~~ 390 (1169)
..++.+.-.+.++.+.++-..|+..-+.+|. ++|.+.-+|+.--..+... .+..+-+..+.+.+..+|.+.
T Consensus 41 ~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~--------lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY 112 (318)
T KOG0530|consen 41 DFRDVMDYFRAIIAKNEKSPRALQLTEDAIR--------LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY 112 (318)
T ss_pred hHHHHHHHHHHHHhccccCHHHHHHHHHHHH--------hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch
Confidence 3445555566677778888889999999998 8899999998766555443 466777888899999999999
Q ss_pred HHHHHHHHHHHHcCChH-HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH----H------------------
Q 001060 391 EYWIRYVLCMEASGSMD-LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA----A------------------ 447 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e-~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~----~------------------ 447 (1169)
.+|..-=.+++..|+.. .-+....+++... -++-.+|...--+....+.++.-+. +
T Consensus 113 QvWHHRr~ive~l~d~s~rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi 191 (318)
T KOG0530|consen 113 QVWHHRRVIVELLGDPSFRELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVI 191 (318)
T ss_pred hHHHHHHHHHHHhcCcccchHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEE
Confidence 99998888788778765 4556677777644 4444455443222222222322111 1
Q ss_pred ------------------HHHHhhhcCCChHHHHHHHHHHHHH-cC--CHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001060 448 ------------------YQLVHTETSPGLLEAIIKHANMERR-LG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 506 (1169)
Q Consensus 448 ------------------~~~a~~~~~P~~~~~~~~~a~~e~r-~g--~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~ 506 (1169)
..+ .+.+.|++..+|..+..++.. .| ...++.......+... ++ ..|.+...+
T Consensus 192 ~~~~~~~~~~~le~El~yt~~-~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~-~~----~sP~lla~l 265 (318)
T KOG0530|consen 192 TNTKGVISKAELERELNYTKD-KILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQL-PK----RSPFLLAFL 265 (318)
T ss_pred EeccCCccHHHHHHHHHHHHH-HHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhcc-CC----CChhHHHHH
Confidence 112 256789999999888888765 33 1344444444444221 11 224444444
Q ss_pred HHHH-----HHHhCCHH---HHHHHHHHHh-hhcCCCHHHH
Q 001060 507 SRFL-----HLVSRNAE---KARQILVDSL-DHVQLSKPLL 538 (1169)
Q Consensus 507 a~~~-----~~~~g~~e---~Ar~i~~kAl-~~~p~s~~l~ 538 (1169)
.+++ ....+.-+ +|.++|+..- +.+|-.+.+|
T Consensus 266 ~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW 306 (318)
T KOG0530|consen 266 LDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYW 306 (318)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 4443 22233333 3444554433 4555555555
No 353
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.93 E-value=0.014 Score=63.14 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=58.7
Q ss_pred ceEEEEecCCCCCCHHHH------HHHHhcCCCeeeeeEEeecCCCc---cccc-E-EEEEECCHHHHHHHHHh-CCCee
Q 001060 1033 VKSVYVRNLPSTVTAFEI------EEEFQNFGRIKPDGVFVRNRKDV---VGVC-Y-AFVEFEDISGVQNAIQA-SPIQL 1100 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L------~~~F~~~G~i~~~~i~~~~~~~g---~~~g-~-afV~F~~~~~a~~Ai~~-~~~~i 1100 (1169)
..-+||-+||+.+..+++ .++|.+||.|+.+-| ++++. ...+ + .||+|.+.++|.++|.. .|..+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvv---Nkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVV---NKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEe---cccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 456899999988877662 578999999998532 33331 1123 2 29999999999999988 89999
Q ss_pred eceEEEEEeccC
Q 001060 1101 AGRQVYIEERRP 1112 (1169)
Q Consensus 1101 ~g~~l~V~~~r~ 1112 (1169)
+||.|+..+...
T Consensus 191 DGr~lkatYGTT 202 (480)
T COG5175 191 DGRVLKATYGTT 202 (480)
T ss_pred cCceEeeecCch
Confidence 999999876543
No 354
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.90 E-value=1.5 Score=47.39 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=98.9
Q ss_pred HHHhhccCCc----ccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHc---C----
Q 001060 337 FETAIRRPYF----HVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY-WIRYVLCMEAS---G---- 404 (1169)
Q Consensus 337 ~e~al~r~~~----~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~-W~~~a~~l~~~---g---- 404 (1169)
|++|++ +| +-.|..+-.-..-..++-..-+.++++.|+...+|-+...|.++++ |..|...+..- .
T Consensus 50 ~~~A~~--~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~r 127 (254)
T COG4105 50 YEEAIK--YFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTR 127 (254)
T ss_pred HHHHHH--HHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcccc
Confidence 666665 22 2223333333444444545567899999999999999999998873 44444444322 1
Q ss_pred C---hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001060 405 S---MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 481 (1169)
Q Consensus 405 ~---~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~ 481 (1169)
+ ...|...|+..++.+ |++.-.-....++- .++. .....=+..+.++.+.|.+..|..
T Consensus 128 Dq~~~~~A~~~f~~~i~ry-PnS~Ya~dA~~~i~-------~~~d-----------~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 128 DQSAARAAFAAFKELVQRY-PNSRYAPDAKARIV-------KLND-----------ALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred CHHHHHHHHHHHHHHHHHC-CCCcchhhHHHHHH-------HHHH-----------HHHHHHHHHHHHHHHhcChHHHHH
Confidence 1 234666777777777 55432211111110 1111 111222456788889999999999
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh-hcCCCH
Q 001060 482 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLD-HVQLSK 535 (1169)
Q Consensus 482 iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~-~~p~s~ 535 (1169)
-++..++..+...+ ..+.+..+...++. .|-.++|-+. .+.|. ..|++.
T Consensus 189 R~~~v~e~y~~t~~---~~eaL~~l~eaY~~-lgl~~~a~~~-~~vl~~N~p~s~ 238 (254)
T COG4105 189 RFEEVLENYPDTSA---VREALARLEEAYYA-LGLTDEAKKT-AKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHhccccccc---hHHHHHHHHHHHHH-hCChHHHHHH-HHHHHhcCCCCc
Confidence 99999998764322 12233334444444 7877777666 44444 446665
No 355
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.77 E-value=0.089 Score=52.80 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001060 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 198 (1169)
Q Consensus 137 ~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~ 198 (1169)
....++.++...|++++|+.++++++..+|.+..+|..++..+. ..|+...|+++|++...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 44556666777788888888888888888888888888888887 77888888888887765
No 356
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.75 E-value=0.096 Score=58.67 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=63.7
Q ss_pred ceEEEEecCC-CCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp-~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
...|.|.||. ..+|.+-|-.+|+-||.|.+|+|+. +++ --|.|.+.|...|+-|++. +|+.+.|++|+|...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~-nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY-NKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeee-cCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 3678899996 5689999999999999999988643 443 3799999999999999987 799999999999987
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
|-
T Consensus 371 KH 372 (492)
T KOG1190|consen 371 KH 372 (492)
T ss_pred cC
Confidence 74
No 357
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.60 E-value=0.067 Score=46.88 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=45.4
Q ss_pred eEEEEecCCCCCCHHH----HHHHHhcCC-CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1034 KSVYVRNLPSTVTAFE----IEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~----L~~~F~~~G-~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
..|||.|||.+.+... |++++..|| .|.. + ..|.|+|-|.+.+.|.+|.+. .|-.+-|+.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~----v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS----V-------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEE----E-------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 4689999999988764 567777887 4433 2 236899999999999999987 788899999999
Q ss_pred EeccC
Q 001060 1108 EERRP 1112 (1169)
Q Consensus 1108 ~~~r~ 1112 (1169)
.+...
T Consensus 72 ~~~~~ 76 (90)
T PF11608_consen 72 SFSPK 76 (90)
T ss_dssp ESS--
T ss_pred EEcCC
Confidence 88743
No 358
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=95.59 E-value=0.017 Score=40.86 Aligned_cols=30 Identities=30% Similarity=0.608 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 146 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~ 146 (1169)
.+++||.+|++++..+|. ...|++||.+|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 588999999999999987 588999999984
No 359
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.26 Score=54.25 Aligned_cols=152 Identities=15% Similarity=0.064 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-c---cCCHHHHHHHHHHHHHcC
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-C---ANYPEYWIRYVLCMEASG 404 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~-~---~~~~e~W~~~a~~l~~~g 404 (1169)
+.-+|-...++.|. ..|.++-.|..-=+.+--+|+...-+.++++.+-. + |-+.-+.-.|+..|+..|
T Consensus 118 ~~h~a~~~wdklL~--------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLD--------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred cccHHHHHHHHHHH--------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34444445666666 35666666666555444567777777888887754 2 334556678888899999
Q ss_pred ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-H---HHHHHHHHHHHHcCCHHHHH
Q 001060 405 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-L---EAIIKHANMERRLGNLEDAF 480 (1169)
Q Consensus 405 ~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-~---~~~~~~a~~e~r~g~~e~A~ 480 (1169)
-+++|.+.-+||++++ +.+.......+.+++.+|++.++.+...+. ....... . -.|.-.+.++...+.++.|.
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t-ed~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT-EDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc-ccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999999999998 788889999999999999999999988874 2222211 1 12445566666678999999
Q ss_pred HHHHHHHHhh
Q 001060 481 SLYEQAIAIE 490 (1169)
Q Consensus 481 ~iy~~Al~~~ 490 (1169)
.+|++-|-..
T Consensus 268 eIyD~ei~k~ 277 (491)
T KOG2610|consen 268 EIYDREIWKR 277 (491)
T ss_pred HHHHHHHHHH
Confidence 9998766543
No 360
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.53 E-value=0.029 Score=61.08 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=9.9
Q ss_pred hHhHHHHHHHHh
Q 001060 723 VGSYFVGQYYQV 734 (1169)
Q Consensus 723 vg~~Fv~~YY~~ 734 (1169)
+-.+|-+.||+.
T Consensus 206 ~~~~~~~ey~~R 217 (465)
T KOG3973|consen 206 QCESFSREYYNR 217 (465)
T ss_pred HHHHHHHHHHHH
Confidence 677899999975
No 361
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.52 E-value=0.56 Score=56.78 Aligned_cols=168 Identities=13% Similarity=0.150 Sum_probs=110.5
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH------HHHHHH-HHHH----HcCChHHHHHHHHHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYV-LCME----ASGSMDLAHNALARATHV 419 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e------~W~~~a-~~l~----~~g~~e~A~~vl~rAl~~ 419 (1169)
+-|..+--...++.| .||-+..+.++.+|......... +|+..+ ..+. .....+.|..++.+..+.
T Consensus 186 lLPp~~~kll~~vGF---~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~ 262 (468)
T PF10300_consen 186 LLPPKVLKLLSFVGF---SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR 262 (468)
T ss_pred hCCHHHHHHHhhcCc---CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh
Confidence 334444444444444 58999999999998875433322 222222 2121 133568899999999999
Q ss_pred hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001060 420 FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL----EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 495 (1169)
Q Consensus 420 ~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~----~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~ 495 (1169)
+ |+..-..++.|+++...|++++|...|+++. ....... -.++.++....-+.++++|...|.+.++...-
T Consensus 263 y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~-~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--- 337 (468)
T PF10300_consen 263 Y-PNSALFLFFEGRLERLKGNLEEAIESFERAI-ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--- 337 (468)
T ss_pred C-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc-cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc---
Confidence 9 8888888889999999999999999999873 2222211 23566677777789999999999999986531
Q ss_pred cCchHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHhh
Q 001060 496 SQTLPMLYAQYSRFLHLVSRNA-------EKARQILVDSLD 529 (1169)
Q Consensus 496 ~~~~~~l~~~~a~~~~~~~g~~-------e~Ar~i~~kAl~ 529 (1169)
...+|...+-..+...++. ++|.++|+++-.
T Consensus 338 ---Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 338 ---SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ---HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2334433333333337777 666666665543
No 362
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=2 Score=46.19 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=110.7
Q ss_pred ChhcHHHHHHHHH--------HHHHcCChHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-
Q 001060 352 SVTELENWHNYLD--------FIERDGDFNKVVKLYERCLIAC-ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV- 421 (1169)
Q Consensus 352 ~~~~~~~W~~yl~--------~~~~~gd~~~a~~lyeraL~~~-~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~- 421 (1169)
....++.|.+-+. +..-.|.+.-.+.+|.+.+..+ +..+.+-..++..-.+-||.+.|...|++.-+...
T Consensus 165 ~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k 244 (366)
T KOG2796|consen 165 EESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK 244 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 3556777877544 3345577778888999999887 67788888999988899999999988886543221
Q ss_pred ----ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 422 ----KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 422 ----p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
...-.++...+.++.-.+++.+|...|.++ .+.+|.++.+....+.+..=+|+...|++.++.++...|.
T Consensus 245 L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i-~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 245 LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI-LRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhccchhHHHHhhhhhheecccchHHHHHHHhhc-cccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 124456666777777788999999999997 7789999988888888888889999999999999999875
No 363
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.45 E-value=2 Score=48.84 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 143 DHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 143 ~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
+-+.+.|++..-+..|+.+|+.-..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe 49 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE 49 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch
Confidence 3345667777777777777776443
No 364
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.44 E-value=4.2 Score=52.38 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 417 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl 417 (1169)
.|-.-.++.++.|-+.+++.+|.--.+ .+..++..||..|.....+++|.-.|+++-
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e---~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSE---KQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHH---HHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 455566666777766666665544331 234577778888877777777665554443
No 365
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.39 E-value=0.63 Score=53.70 Aligned_cols=170 Identities=16% Similarity=0.110 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---hccChHHHHHHHHHHHH---cCCHHHHHHHHHHHhhhcCCChHH
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVF---VKRLPEIHLFAARFKEQ---NGDIDGARAAYQLVHTETSPGLLE 461 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~---~p~~~~l~~~~a~~~e~---~g~~~~A~~~~~~a~~~~~P~~~~ 461 (1169)
.++++-+.+...|....+++..+++.+..-.+- ..+.+.+.++||-.+.+ .|+.++|+.++..++....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 456677777777777778888887776654430 24678889999999998 899999999999965666777888
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC-HH---HHHHHHHHH-
Q 001060 462 AIIKHANMERRL---------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN-AE---KARQILVDS- 527 (1169)
Q Consensus 462 ~~~~~a~~e~r~---------g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~-~e---~Ar~i~~kA- 527 (1169)
++...+.++.++ ..+++|+..|.++.+..++ . + --++++-++.. .|. .+ +.+++--+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~----Y--~GIN~AtLL~~-~g~~~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-Y----Y--SGINAATLLML-AGHDFETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-c----c--chHHHHHHHHH-cCCcccchHHHHHHHHHHH
Confidence 877777766433 2478999999999998742 1 1 12566666555 553 32 333433111
Q ss_pred --h-h--hcCCCHHHHHHHHHhHhh--CCChhHHHHHHHHHHHHhhcC
Q 001060 528 --L-D--HVQLSKPLLEALIHFESI--QSSPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 528 --l-~--~~p~s~~l~~~~a~~E~~--~~~~~~~~~~r~l~eral~~~ 568 (1169)
+ + .......+|.---.+|.. .++ .+.+...+++++...
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d---~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLAGD---YEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcC
Confidence 1 1 112335788755555554 344 566888889888764
No 366
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=95.38 E-value=0.08 Score=57.37 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=84.3
Q ss_pred CCc-chhHhHHHHHHHHhhhh--CcccccccccCCceEEEE-cCCcc-c-chhhHHHHHHHHhcCCCcce-----eEee-
Q 001060 718 AYP-AQVGSYFVGQYYQVLQQ--QPDLVHQFYSDASSMIRV-DGDST-E-SASSMLDIHSLVISLNFTAI-----EIKT- 785 (1169)
Q Consensus 718 ~~~-~~vg~~Fv~~YY~~l~~--~p~~l~~fY~~~s~~~~~-~g~~~-~-~~~~~~~I~~~~~~l~~~~~-----~i~~- 785 (1169)
.|| ..+|..|.+.||.+|+. +-=..--|+.|-+--+.+ .++.. . -..|-+.+..+|.+|-.+.. .+.+
T Consensus 124 ~~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~~ 203 (262)
T PF15008_consen 124 QYPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDSD 203 (262)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCCC
Confidence 444 55999999999999999 444466788884322222 22221 2 22466677889999876532 3554
Q ss_pred -eeccccCCCceEEEEEEEEEecCccccceeEEEEEEEeeC---CeEEEEcceEEec
Q 001060 786 -INSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE---KGYFVLNDIFHFL 838 (1169)
Q Consensus 786 -~d~q~~~~~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nDifr~~ 838 (1169)
+.|-.+..|-|+|.|.|+|-.++.+ .=-|=|.|=|...+ |.|.|.+=-+|..
T Consensus 204 G~k~~~~phGlV~V~v~GTvH~~~~C-lGiFEq~FGLiRdP~~~N~WKiK~~~l~i~ 259 (262)
T PF15008_consen 204 GVKGRISPHGLVLVAVCGTVHRDNTC-LGIFEQIFGLIRDPFAENNWKIKFVNLRIR 259 (262)
T ss_pred CcceEEcCCCcEEEEEeeeEecCCce-EeehhhhhhcccCccccCceeEEEEEEEEE
Confidence 6666688888999999999887764 44599999998765 8999987666554
No 367
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.44 Score=52.32 Aligned_cols=122 Identities=17% Similarity=0.154 Sum_probs=91.6
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
...|++..+..+|..++...+.+.++-..|+.+|...|+.+.|..+|...=.....+..........++++.....+...
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 46789999999999999999999999999999999999999999888653221101111121234466666655555544
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 447 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
+-.+ ...+|++.++-+.++..+...|+.+.|...+-..+..+
T Consensus 225 l~~~--~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 225 LQRR--LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHH--HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4444 35699999999999999999999999888776666654
No 368
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.36 E-value=0.96 Score=53.03 Aligned_cols=163 Identities=12% Similarity=0.064 Sum_probs=107.6
Q ss_pred HcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-------h----cC--C---------C-
Q 001060 402 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-------E----TS--P---------G- 458 (1169)
Q Consensus 402 ~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-------~----~~--P---------~- 458 (1169)
+..+...-+++-.+|+++. |++..+|+.+|. +....+.+|..+|++++. + .. + .
T Consensus 180 RERnp~aRIkaA~eALei~-pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEIN-PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred hcCCHHHHHHHHHHHHHhh-hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 4456666677788899988 899999998873 345567778888776511 0 00 0 0
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh-cCCCHH
Q 001060 459 -LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH-VQLSKP 536 (1169)
Q Consensus 459 -~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~-~p~s~~ 536 (1169)
..-+-.+++.+.+++|+.++|++.|+..++.+|.. ++-.+...+...+.. .+.+.++..++.+-=.. -|+++.
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~----~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL----DNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc----chhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHH
Confidence 01234677888899999999999999999887632 234467777777776 88999999998885333 367776
Q ss_pred HHHHHHHhHhhC-CCh---h---------HHHHHHHHHHHHhhcCCCCC
Q 001060 537 LLEALIHFESIQ-SSP---K---------QIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 537 l~~~~a~~E~~~-~~~---~---------~~~~~r~l~eral~~~~~~~ 572 (1169)
+...-+.+..+. ++. + ....+...+.||++.+|-.+
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 666555554332 211 0 01234456777777766544
No 369
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.36 E-value=0.052 Score=50.23 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=50.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecC------CCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR------KDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVY 1106 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~------~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~ 1106 (1169)
.+.|.|-+.|... ...+-+.|++||.|.+..-..++. ......++-.|.|+++.+|.+||..||..|+|..+.
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 4668888999874 455779999999997642001110 011244689999999999999999999999987643
Q ss_pred -EEec
Q 001060 1107 -IEER 1110 (1169)
Q Consensus 1107 -V~~~ 1110 (1169)
|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 4443
No 370
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=11 Score=46.86 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCC
Q 001060 115 DNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD 185 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~ 185 (1169)
+.+++|..+-+.....-|. -...|..|+++++-.++++.|-.++-+++. ++...|-.+..... ..+.
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---n~~~eWe~~V~~f~-e~~~ 438 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---NNAAEWELWVFKFA-ELDQ 438 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---chHHHHHHHHHHhc-cccc
Confidence 3667777666655554443 457899999999999999999988877775 57788876654443 4443
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.31 E-value=0.58 Score=54.46 Aligned_cols=161 Identities=13% Similarity=0.038 Sum_probs=107.6
Q ss_pred CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-------------------------ccC
Q 001060 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-------------------------KRL 424 (1169)
Q Consensus 370 gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~-------------------------p~~ 424 (1169)
.|++..+. +|..+|.+.+..+.++.++..+|+.+.|.++++||+-.+. +.+
T Consensus 24 ~Dp~~l~~----ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eN 99 (360)
T PF04910_consen 24 HDPNALIN----LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPEN 99 (360)
T ss_pred cCHHHHHH----HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccc
Confidence 35555543 3566788999999999988888888888888888764331 112
Q ss_pred hHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhCCCccCch
Q 001060 425 PEIH---LFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANME-RRLGNLEDAFSLYEQAIAIEKGKEHSQTL 499 (1169)
Q Consensus 425 ~~l~---~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e-~r~g~~e~A~~iy~~Al~~~~~~~~~~~~ 499 (1169)
..+| +.+...+.+.|-+..|.++.+-+ ..++|. ++-..+.+++++ .+.++++-.+.+++........+ ....+
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlL-lsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~-~~~~l 177 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLL-LSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN-WLSLL 177 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh-hhhhC
Confidence 2333 33567788899999999998876 789998 776666666655 56677887888888765531100 00013
Q ss_pred HHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHhhhcCCCHHH
Q 001060 500 PMLYAQYSRFLHLVSRNA---------------EKARQILVDSLDHVQLSKPL 537 (1169)
Q Consensus 500 ~~l~~~~a~~~~~~~g~~---------------e~Ar~i~~kAl~~~p~s~~l 537 (1169)
|.+-...+-.++. .++. ++|+..+++|+..+|.-...
T Consensus 178 Pn~a~S~aLA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~ 229 (360)
T PF04910_consen 178 PNFAFSIALAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVP 229 (360)
T ss_pred ccHHHHHHHHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhHHHHHH
Confidence 4444444333334 4445 89999999999999865433
No 372
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.31 E-value=0.011 Score=65.21 Aligned_cols=75 Identities=25% Similarity=0.251 Sum_probs=58.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCee--eeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEE
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIK--PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~--~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~ 1108 (1169)
-.|..++||+++++.++.++|..--+|+ ..+|+...+..|+..|-|||.|...++|+.||..+.-.|+-|.|.+.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567889999999999999997433333 12244556667899999999999999999999998777877766653
No 373
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.29 E-value=0.041 Score=44.68 Aligned_cols=52 Identities=17% Similarity=0.359 Sum_probs=40.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHH
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1093 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai 1093 (1169)
+.|-|.|.+.+..+. +..+|..||+|..+. +.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~--~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIY--VPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEE--cCC-----CCcEEEEEECCHHHHHhhC
Confidence 567888998776655 556999999999854 321 2358999999999999985
No 374
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.26 E-value=0.038 Score=39.94 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 168 (1169)
.+|..++.++...|++++|++.|+++|.+.|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777776653
No 375
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=2.6 Score=45.48 Aligned_cols=213 Identities=11% Similarity=0.068 Sum_probs=144.6
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHH-HHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID-GAR 445 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~-g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~-~A~ 445 (1169)
+...-.||+.+-+.||..+|-+..+|.---.++... .++.+-++.+.+.++-. |++-.+|...-.+.+..|+.. .-+
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccchH
Confidence 344567999999999999999999998777777654 35667778899988877 889999999988889999877 566
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC-----CHHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR-----NAEKA 520 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g-----~~e~A 520 (1169)
++.+++ +..+..+.-+|.-+-.+.+..+.++.-...-.+.|+.+.-++ ..|.+-..+.....| .++.=
T Consensus 134 ef~~~~-l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN------SAWN~Ryfvi~~~~~~~~~~~le~E 206 (318)
T KOG0530|consen 134 EFTKLM-LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN------SAWNQRYFVITNTKGVISKAELERE 206 (318)
T ss_pred HHHHHH-HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc------chhheeeEEEEeccCCccHHHHHHH
Confidence 777776 667888888998888888888889988888888888764322 134221100000012 13445
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHhHhh-CC---ChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH-HHHHHhhC
Q 001060 521 RQILVDSLDHVQLSKPLLEALIHFESI-QS---SPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVF-LEFLGLFG 595 (1169)
Q Consensus 521 r~i~~kAl~~~p~s~~l~~~~a~~E~~-~~---~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~-l~fe~~~G 595 (1169)
.....+.+...|+|..-|.-+.-+... .| +++-++.+..++ +.... -+|..-..|...| .+++....
T Consensus 207 l~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~---~~~~~-----~sP~lla~l~d~~~e~~l~~~~ 278 (318)
T KOG0530|consen 207 LNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY---LQLPK-----RSPFLLAFLLDLYAEDALAYKS 278 (318)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh---hccCC-----CChhHHHHHHHHHHHHHhhccc
Confidence 667788899999999988766655553 22 222233444443 22221 2345555677777 55665544
Q ss_pred C
Q 001060 596 D 596 (1169)
Q Consensus 596 d 596 (1169)
+
T Consensus 279 ~ 279 (318)
T KOG0530|consen 279 S 279 (318)
T ss_pred c
Confidence 3
No 376
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.32 Score=53.59 Aligned_cols=158 Identities=13% Similarity=-0.054 Sum_probs=118.4
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHcCCHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDIDGA 444 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~a~~~e~~g~~~~A 444 (1169)
-.|++.+|-..+++.|...|.+.-.|-.--..+.-.|..+.-++.++|.+-...++. .-++=+|+--+++.|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 457788888899999999999988888777777778888888889988876533444 45666788889999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL 524 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~ 524 (1169)
.+.-+++ .++|+.+.-+.-..+.+..-.+++.++.+.+.+--..=. ........-|-+++-|+.. .+.++.|..||
T Consensus 195 Ek~A~ra-lqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr--~s~mlasHNyWH~Al~~iE-~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRA-LQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR--QSWMLASHNYWHTALFHIE-GAEYEKALEIY 270 (491)
T ss_pred HHHHHhh-ccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh--hhhHHHhhhhHHHHHhhhc-ccchhHHHHHH
Confidence 9999998 789998887777777788888899999888765432211 0011112235566766555 67899999999
Q ss_pred HHHhh
Q 001060 525 VDSLD 529 (1169)
Q Consensus 525 ~kAl~ 529 (1169)
.+-+-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 86553
No 377
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=13 Score=47.14 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 195 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~er 195 (1169)
++++|-..-++. +.+..|-.++..-++.+...+|++-|-|+ +++.-+..-++... +.|.+++..+++..
T Consensus 1090 ~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~-~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1090 SLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVAS-RTGKYEDLVKYLLM 1158 (1666)
T ss_pred hHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 455554444443 34678888888888888888888877554 33444455555544 56677777666666
Q ss_pred HHHhcCCCCCCHHHHHHHHH
Q 001060 196 GLAYVGTDYLSFPLWDKYIE 215 (1169)
Q Consensus 196 Al~~~g~d~~s~~lw~~y~~ 215 (1169)
|-+.....+....|...|.+
T Consensus 1159 aRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1159 ARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHhhcCccchHHHHHHHHH
Confidence 66554433334455555554
No 378
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.13 E-value=0.047 Score=63.21 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=48.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCc--cccc---EEEEEECCHHHHHHHHHh
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVC---YAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g--~~~g---~afV~F~~~~~a~~Ai~~ 1095 (1169)
-.++||||+||++++|+.|...|..||.++- +-..+....+ -.+| |+|+.|++..++++-|.+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 4689999999999999999999999999862 1111111111 2456 999999999999987766
No 379
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=94.94 E-value=0.082 Score=55.18 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=57.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEEEec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V~~~ 1110 (1169)
...+|+.|||.+++.+.|..+|.+|.-.+.++. +..+ ++.|||+|.+...+..|... .+..|- ...++|.++
T Consensus 146 n~ilf~~niP~es~~e~l~~lf~qf~g~keir~-i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 146 NNILFLTNIPSESESEMLSDLFEQFPGFKEIRL-IPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred ceEEEEecCCcchhHHHHHHHHhhCcccceeEe-ccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 478999999999999999999999999998753 4322 37999999998888888876 566665 666777654
No 380
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=94.90 E-value=0.12 Score=61.08 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=79.6
Q ss_pred chhHhHHHHHHHHhhhhCc-ccccccccCCceEEEE-cCCcc------------------------------cchhhHHH
Q 001060 721 AQVGSYFVGQYYQVLQQQP-DLVHQFYSDASSMIRV-DGDST------------------------------ESASSMLD 768 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~p-~~l~~fY~~~s~~~~~-~g~~~------------------------------~~~~~~~~ 768 (1169)
-++-.+|+++||...+.+. ..+-..|+++|.|.+- +.... ....|..+
T Consensus 338 ~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g~~~ 417 (585)
T KOG3763|consen 338 KQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHGACD 417 (585)
T ss_pred HHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhccchH
Confidence 3567799999999999655 4567777888888752 11100 12345568
Q ss_pred HHHHHhcCCCcceeEe----eeeccccCCCceEEEEEEEEEecCc---cccce---eEEEEEEEeeC-CeEEEEcceEE
Q 001060 769 IHSLVISLNFTAIEIK----TINSLGSWNGGVLVMVSGSVKTKEF---CRRRK---FVQTFFLAPQE-KGYFVLNDIFH 836 (1169)
Q Consensus 769 I~~~~~~l~~~~~~i~----~~d~q~~~~~~ilv~v~G~~~~~~~---~~~~~---F~q~F~L~~~~-~~y~v~nDifr 836 (1169)
|...+..||-+.+.+. .+-.|. ..++.+.|.|.+.-.+. ..-++ |+-||+..|-+ .+-.|.||.+-
T Consensus 418 Iv~aLs~LPkT~Hdl~s~vvDv~~~~--~~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~iv~d~Lf 494 (585)
T KOG3763|consen 418 IVVALSALPKTQHDLDSFVVDVWYQT--GNLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLAIVNDQLF 494 (585)
T ss_pred HHHHHHhCccchhhhhhhheeeeecc--cceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceEEEeceeE
Confidence 9999999998776433 344444 35788999999864322 11234 99999999987 68999999883
No 381
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.88 E-value=0.033 Score=68.17 Aligned_cols=11 Identities=9% Similarity=-0.134 Sum_probs=5.1
Q ss_pred eeEEEEEEEee
Q 001060 814 KFVQTFFLAPQ 824 (1169)
Q Consensus 814 ~F~q~F~L~~~ 824 (1169)
.|-+-|.|.-.
T Consensus 890 ~~~~~~rl~g~ 900 (1282)
T KOG0921|consen 890 REKHHSRLSGT 900 (1282)
T ss_pred ccccccccccc
Confidence 34444555443
No 382
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.86 E-value=0.27 Score=49.27 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=48.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~ 1095 (1169)
..+|.|.+||...++.+|+++..+-|.|...++. + -|.+.|+|-..+++.=||..
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~-r-------Dg~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ-R-------DGVGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee-c-------ccceeeeeeehhhHHHHHHh
Confidence 4789999999999999999999999999886642 1 15899999999999999976
No 383
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.76 E-value=0.078 Score=62.93 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=65.0
Q ss_pred Cce-EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1032 EVK-SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~-~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
++. .|-+.|+|++++-+||.+||.-|-.+-. .|.++....|+..|-|.|-|++.+.|.+|... ++..|..|.|++.
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~-sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPN-SIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCC-ceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 444 6789999999999999999999966543 35677777899999999999999999999876 7999999988875
No 384
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.72 E-value=0.073 Score=38.38 Aligned_cols=34 Identities=12% Similarity=-0.010 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 500 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 500 ~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
+.+|..++.+++. .|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 3578888888887 999999999999999999975
No 385
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.59 E-value=0.022 Score=63.56 Aligned_cols=72 Identities=28% Similarity=0.317 Sum_probs=57.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V~ 1108 (1169)
+++-|.++|||++++|++|-.++.+||.|..+.+ + +++.-||++|.|.++|...+.- -.-.+.|+.|.|.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~-l------kGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLM-L------KGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeee-e------ccchhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 5688999999999999999999999999998542 2 2345899999999888774433 2566788888886
Q ss_pred ec
Q 001060 1109 ER 1110 (1169)
Q Consensus 1109 ~~ 1110 (1169)
+.
T Consensus 100 ~s 101 (492)
T KOG1190|consen 100 YS 101 (492)
T ss_pred hh
Confidence 53
No 386
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.59 E-value=0.2 Score=50.26 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
.++..++..+...|++++++.++++++..+|.+..+|..++..+...|+..+|+.+|++....+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4566677777889999999999999999999999999999999999999999999998877654
No 387
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.28 Score=51.84 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 450 (1169)
.+..++..|-|+|..+|..+..|..-|.++.+..+++.+..-..||+++. |+....+++++....+...+++|+..+.+
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 46678889999999999999999999999999999999999999999987 89999999999999999999999999998
Q ss_pred H
Q 001060 451 V 451 (1169)
Q Consensus 451 a 451 (1169)
+
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 7
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.38 E-value=14 Score=43.59 Aligned_cols=133 Identities=14% Similarity=0.069 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc--ChHHHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAARF 434 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~--~~~l~~~~a~~ 434 (1169)
-.+..+++.+.++ ..++...+++|.++.|-++..+=..++.+|++ ++...+...|.+|+..+-|+ +..+.-.|..+
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL 177 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKL 177 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHH
Confidence 3466677777666 56788899999999999999999999999987 77888999999999877653 34444455555
Q ss_pred HHH-cCCHHHHHHHHHHHhhhcCCChHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 435 KEQ-NGDIDGARAAYQLVHTETSPGLLEAIIKHA-NMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 435 ~e~-~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a-~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
-+- ..+.+.-..+..++...+.-+...+.+... .-+....|+++|+.++...++.+.
T Consensus 178 ~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 178 PELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDE 236 (711)
T ss_pred HHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcc
Confidence 443 446667777777764455555556666655 344556789999999998888763
No 389
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.38 E-value=0.072 Score=38.60 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
..|..++..+...+++++|+..|+++|++.|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777777777777777777777777664
No 390
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.31 E-value=0.093 Score=51.50 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEeccCCC
Q 001060 1049 EIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPNT 1114 (1169)
Q Consensus 1049 ~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r~~~ 1114 (1169)
+|-+.|..||.+.-+++ + .+.-.|+|.+-.+|.+|+..+|+.++|+.|+|..+.+..
T Consensus 52 ~ll~~~~~~GevvLvRf-v--------~~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRF-V--------GDTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEE-E--------TTCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEE-e--------CCeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 67788899999864432 1 135699999999999999999999999999999988754
No 391
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.15 E-value=1.2 Score=53.00 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
.+.....+..+.+...+--|.++|.++. . .-..+++....+++++|..+-++-=+ ..+.+|.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~g-D--------~ksiVqlHve~~~W~eAFalAe~hPe---------~~~dVy~ 808 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMG-D--------LKSLVQLHVETQRWDEAFALAEKHPE---------FKDDVYM 808 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhc-c--------HHHHhhheeecccchHhHhhhhhCcc---------ccccccc
Confidence 3444555666666666666777777651 1 11234455556788888877664332 3356899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Q 001060 505 QYSRFLHLVSRNAEKARQILVDS 527 (1169)
Q Consensus 505 ~~a~~~~~~~g~~e~Ar~i~~kA 527 (1169)
.|++|+.. ..++++|.+.|.+|
T Consensus 809 pyaqwLAE-~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 809 PYAQWLAE-NDRFEEAQKAFHKA 830 (1081)
T ss_pred hHHHHhhh-hhhHHHHHHHHHHh
Confidence 99999887 77899999998877
No 392
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.15 E-value=0.58 Score=52.96 Aligned_cols=67 Identities=18% Similarity=0.109 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001060 462 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLD 529 (1169)
Q Consensus 462 ~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~ 529 (1169)
++.++++...-+|+++.|.+.|++.+.+...-.....-...-..++..++. ..++++|+.++.+-|.
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLA 303 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHH
Confidence 456667777778999999999998876542100000001112233333333 4456666666665543
No 393
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=1.4 Score=46.97 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 426 EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 426 ~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
-+++.|++++...|++-++++....+ +...|++..++++++......=+.++|+.-|.++|+++|
T Consensus 231 pLllNy~QC~L~~~e~yevleh~sei-L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEI-LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 47788899999999999999999997 788999999999999988888889999999999999985
No 394
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.88 E-value=0.29 Score=59.16 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=5.0
Q ss_pred HHHHHHhhh
Q 001060 728 VGQYYQVLQ 736 (1169)
Q Consensus 728 v~~YY~~l~ 736 (1169)
-+|||.+..
T Consensus 421 rpqYykLIE 429 (1102)
T KOG1924|consen 421 RPQYYKLIE 429 (1102)
T ss_pred hHHHHHHHH
Confidence 456666554
No 395
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.76 E-value=12 Score=42.14 Aligned_cols=157 Identities=14% Similarity=0.011 Sum_probs=101.1
Q ss_pred HHcCChHHHHHHHHHHHHhc-cCCHH-------HHHHHHHHHHHcC-ChHHHHHHHHHHHHHhhc------c-------C
Q 001060 367 ERDGDFNKVVKLYERCLIAC-ANYPE-------YWIRYVLCMEASG-SMDLAHNALARATHVFVK------R-------L 424 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~-~~~~e-------~W~~~a~~l~~~g-~~e~A~~vl~rAl~~~~p------~-------~ 424 (1169)
.+.||++.|...|.||-... ...++ +.+..+.-+...+ ++++|...++||.+++.. . .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35789999999999987765 44443 6666666667778 999999999999988521 1 1
Q ss_pred hHHHHHHHHHHHHcCCH---HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001060 425 PEIHLFAARFKEQNGDI---DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 501 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~---~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~ 501 (1169)
..+...++..+...+.. ++|..+++.+ ..-.|+.+.+++....+..+.++.+++.+++.+++....-. ...-.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l-~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~---e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLL-ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS---ESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc---cchHH
Confidence 23455566666665554 4455555555 44577777887777777777888899999999998875311 11122
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001060 502 LYAQYSRFLHLVSRNAEKARQILVDSLD 529 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~~e~Ar~i~~kAl~ 529 (1169)
..+...+.+.. .+...|...+...|.
T Consensus 160 ~~l~~i~~l~~--~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 160 SILHHIKQLAE--KSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHHHHh--hCcHHHHHHHHHHHH
Confidence 23333333332 234556666655555
No 396
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.67 E-value=0.39 Score=55.49 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--------hHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--------LLEA 462 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--------~~~~ 462 (1169)
++..-.+.+|....++..+..-..-+..+. .+.+...+..+.++...|++.+|.+++....+...|+ ....
T Consensus 207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif 285 (696)
T KOG2471|consen 207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIF 285 (696)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhee
Confidence 334444444544444444443333344333 5788888999999999999999999998764544555 3446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----CCCc--cCc-----hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEK-----GKEH--SQT-----LPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~-----~~~~--~~~-----~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
|.+++.+..+.+.+.-+..+|.+|+.... +=.. ..+ .-++..+.+-.+.. .|+...|...|.++.+.
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHV 364 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHH
Confidence 88999999999999999999999996211 0000 000 12345556555454 99999999999999999
Q ss_pred cCCCHHHHHHHHHh
Q 001060 531 VQLSKPLLEALIHF 544 (1169)
Q Consensus 531 ~p~s~~l~~~~a~~ 544 (1169)
+-.++.+|..++.-
T Consensus 365 fh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 365 FHRNPRLWLRLAEC 378 (696)
T ss_pred HhcCcHHHHHHHHH
Confidence 99999999877643
No 397
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.56 E-value=27 Score=44.01 Aligned_cols=446 Identities=11% Similarity=0.063 Sum_probs=204.5
Q ss_pred hHHHHHHHHHHhCC----CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHhCCHH
Q 001060 83 GEEDRLWNIVKANS----SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFP--LCYGY----WKKYADHEARVGSMD 152 (1169)
Q Consensus 83 ~~~~~l~~al~~nP----~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P--~~~~~----W~~~a~~e~~~~~~e 152 (1169)
.++.-|+-+++..+ .+.-....|+.++-.- ..+++.|+..+++++.+.- ...++ -..++.++.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~e-T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEE-TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 44566666663222 2455566777776643 3689999999999977653 33222 233455665666555
Q ss_pred HHHHHHHHHHhccCC-CHHHHHHHHHHHHh----hcCCHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHH--hhhH
Q 001060 153 KVVEVYERAVQGVTY-SVDIWLHYCIFAIN----TYGDPETIRRLFERGLAYVG--TDYLSFPLWDKYIEYEYM--QQEW 223 (1169)
Q Consensus 153 ~A~~l~eraL~~~P~-s~~lw~~y~~~~~~----~~~~~e~Ar~~~erAl~~~g--~d~~s~~lw~~y~~~e~~--~~~~ 223 (1169)
|...+++++...-. ....|...++|+.- ..++...|.+.++.+..... .|+ ...+...+.+.... .+..
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~-~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP-AVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHHhcCCCc
Confidence 99999998886532 23457766666631 12688889999988887653 111 11122222222211 1323
Q ss_pred HHHHHHHHHHHhc---c----h---hhHHHHHHH--HHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhh-ccccc
Q 001060 224 SRVAMIYTRILEN---P----I---QQLDRYFSS--FKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVK-ANEEE 290 (1169)
Q Consensus 224 ~~a~~iY~r~L~~---p----~---~~~~~~~~~--~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~-~~~~~ 290 (1169)
+.+....++++.. + . ..+..++.. ...+......+.+ .+........+........+.. ..++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~---~~~L~~lq~~~~~~~~~~~w~~~~~d~~ 272 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNS---KQKLKQLQQFLDEIKKSPSWPSWDEDGS 272 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHHHHHhhcCccCCCcCCCee
Confidence 4444555544322 1 0 012211111 1111111111111 1110000001111000000000 00000
Q ss_pred cCCcc---ccc--cCCccccCcchHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHhh-ccCCcccCCC-ChhcH
Q 001060 291 VQPDA---TEQ--TSKPVSAGLTEAEELEK--YIAVREEMYKK-----AKEFDSKIIGFETAI-RRPYFHVKPL-SVTEL 356 (1169)
Q Consensus 291 ~~~~~---~e~--~~~~~~~~~~~~~~~~k--~i~~~~~~y~~-----~~~~~~ai~~~e~al-~r~~~~v~pl-~~~~~ 356 (1169)
+.-.. ... ........++..+...- ++...-.++.. .+=++++++..++.+ +++.....++ .-...
T Consensus 273 i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~ 352 (608)
T PF10345_consen 273 IPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASER 352 (608)
T ss_pred EEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHh
Confidence 00000 000 00111112222222111 12221122221 122344444555544 2111111111 01233
Q ss_pred HHHHHHHHHHH---------HcCChHHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHHcCChHHHHHHHHH---
Q 001060 357 ENWHNYLDFIE---------RDGDFNKVVKLYERCLIACA---------NYPEYWIRYVLCMEASGSMDLAHNALAR--- 415 (1169)
Q Consensus 357 ~~W~~yl~~~~---------~~gd~~~a~~lyeraL~~~~---------~~~e~W~~~a~~l~~~g~~e~A~~vl~r--- 415 (1169)
..|..++.+.. -.+++..+....+.....+. ..+-+++-.|.+....|+++.|...|.+
T Consensus 353 ~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~ 432 (608)
T PF10345_consen 353 IQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRF 432 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHH
Confidence 56777665542 34788888888777665543 3466888888888889999999999982
Q ss_pred ----HHHHhhccChHHHHHHH----HHHHHcC--CHHH--HHHHHHHHhhhc---CC-ChHHHHHHHHHHHHHc---CCH
Q 001060 416 ----ATHVFVKRLPEIHLFAA----RFKEQNG--DIDG--ARAAYQLVHTET---SP-GLLEAIIKHANMERRL---GNL 476 (1169)
Q Consensus 416 ----Al~~~~p~~~~l~~~~a----~~~e~~g--~~~~--A~~~~~~a~~~~---~P-~~~~~~~~~a~~e~r~---g~~ 476 (1169)
..... ....++++..+ .++...+ +..+ +..+++.+ ... .| .+...|..+...-... -.+
T Consensus 433 ~~~~~~~~~-~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i-~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 510 (608)
T PF10345_consen 433 LLCEAANRK-SKFRELYILAALNLAIILQYESSRDDSESELNELLEQI-EPLCSNSPNSYNRTAYCLVLATYNTFEPFSS 510 (608)
T ss_pred hhhhhhccC-CcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhc-CccccCCccHHHHHHHHHHHHHHhhCCcccc
Confidence 22222 23455555533 2222222 2222 56666653 111 11 1223333333222222 123
Q ss_pred HHHHHHHHHHHHhh-hCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC----HHHH
Q 001060 477 EDAFSLYEQAIAIE-KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS----KPLL 538 (1169)
Q Consensus 477 e~A~~iy~~Al~~~-~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s----~~l~ 538 (1169)
.+++..+..++... ..-. ....-.+...++.+.+- .|+..+..++..+++...... ..+|
T Consensus 511 ne~k~~l~~~L~~~~~~~~-n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW 575 (608)
T PF10345_consen 511 NEAKRHLQEALKMANNKLG-NSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLW 575 (608)
T ss_pred HHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 57888888888766 2111 11122234445555444 788999888888888765444 3566
No 398
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.52 E-value=2.1 Score=44.57 Aligned_cols=86 Identities=10% Similarity=0.175 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHH
Q 001060 326 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA---NYPEYWIRYVLCMEA 402 (1169)
Q Consensus 326 ~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~---~~~e~W~~~a~~l~~ 402 (1169)
+..+.+..++.++..+ .+..-...|..+++++.+.||.+.|++.|.++...|- +..++|+..+.+...
T Consensus 15 ~~~~Le~elk~~~~n~---------~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~ 85 (177)
T PF10602_consen 15 ELEKLEAELKDAKSNL---------GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF 85 (177)
T ss_pred HHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH
Confidence 3344555555554332 2233346788899999999999999999999998874 445788999988888
Q ss_pred cCChHHHHHHHHHHHHHh
Q 001060 403 SGSMDLAHNALARATHVF 420 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~ 420 (1169)
.+++..+...+.++-.+.
T Consensus 86 ~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 86 FGDWSHVEKYIEKAESLI 103 (177)
T ss_pred hCCHHHHHHHHHHHHHHH
Confidence 899999988888887755
No 399
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.49 E-value=0.078 Score=58.71 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=60.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCC-eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
..|.+++||+.++.++|-++|..|-. |+.-+|.+.-+..|+..|-|||+|.+.+++.+|... ++..+.+|.|.|....
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 57889999999999999999998864 333223333345688999999999999999999877 4555568888886543
No 400
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=6.2 Score=43.67 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001060 374 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 453 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 453 (1169)
.++.+.++.+.. -.+.-+.-+.-+...|++.+|..+|..++... +++..+.+.++.++...|+.+.|..+|..+-.
T Consensus 121 qlr~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 121 QLRQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred HHHHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 455556665533 23333344444556799999999999999987 78899999999999999999999999887411
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 454 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 454 ~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
+..-+........+.+..+.....+...+ ++.+..+|+ ...+-+.++..+.. .|+.++|.+.+-..|+.+
T Consensus 197 ~~~~~~~~~l~a~i~ll~qaa~~~~~~~l-~~~~aadPd------d~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 197 QAQDKAAHGLQAQIELLEQAAATPEIQDL-QRRLAADPD------DVEAALALADQLHL-VGRNEAALEHLLALLRRD 266 (304)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence 11111111122345566666555444333 444455543 35677788888766 999999998887777654
No 401
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.47 E-value=2.3 Score=45.75 Aligned_cols=194 Identities=16% Similarity=0.202 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----cCCHH-HHHHHHH
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTEL----ENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE-YWIRYVL 398 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~----~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-----~~~~e-~W~~~a~ 398 (1169)
+.++|+..|++.+. +++..- .+...++...-+.+++++.+..|.+.|... .++.+ .-....+
T Consensus 42 ~p~~Al~sF~kVle--------lEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlD 113 (440)
T KOG1464|consen 42 EPKEALSSFQKVLE--------LEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILD 113 (440)
T ss_pred CHHHHHHHHHHHHh--------cccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 67788888888887 443322 233445555567899999999998887653 23333 3333444
Q ss_pred HHHHcCChHHHHHHHHHHHHHhh-ccChHHHHH----HHHHHHHcCCHHHHHHHHHHHhhhc-----------CCChHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFV-KRLPEIHLF----AARFKEQNGDIDGARAAYQLVHTET-----------SPGLLEA 462 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~-p~~~~l~~~----~a~~~e~~g~~~~A~~~~~~a~~~~-----------~P~~~~~ 462 (1169)
|.....+++...+.|+..+.... -++.++|+. ++.++...+++.+-.++++++.... ....+++
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 44445566666666766555431 246677765 6777777777877777777653211 1224566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
|-.-+.++-.+.+-.+...+|+++|.+...--|+..+..+...=+.+..+ .|.+++|-.-|=.|++..
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlr-eg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLR-EGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccc-cchHHHHHhHHHHHHhcc
Confidence 77777788888888999999999998764222222222222222334344 788888888888888754
No 402
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.41 E-value=0.14 Score=37.02 Aligned_cols=30 Identities=17% Similarity=0.027 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
++|+..|.++...|++++|+..|++|+++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 456666666666666666666666666655
No 403
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.28 E-value=0.74 Score=42.01 Aligned_cols=78 Identities=18% Similarity=0.096 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC--YGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~--~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
..+..|++.++.||.|.++.+.|+..+.. .|+++.|...+-.++..++.. ...-+.++++....|.-+-...-|+|
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~--~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLA--AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 56777888888888888888888887776 458888888888888877664 45555666665555554444444444
Q ss_pred HH
Q 001060 161 AV 162 (1169)
Q Consensus 161 aL 162 (1169)
-|
T Consensus 84 kL 85 (90)
T PF14561_consen 84 KL 85 (90)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 404
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=93.18 E-value=0.42 Score=52.78 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=57.4
Q ss_pred CceEEEEecCC----CCCC-------HHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001060 1032 EVKSVYVRNLP----STVT-------AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1099 (1169)
Q Consensus 1032 ~~~~i~V~nlp----~~~t-------~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~ 1099 (1169)
..++|.++|+- ...+ .++|++--++||.|.+|- |.++ .+.|.+-|.|.+.+.|..||+. +|-.
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vv--v~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVV--VYDR---HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEE--Eecc---CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 34789999983 2233 245555678999999964 4444 3568999999999999999998 7999
Q ss_pred eeceEEEEEecc
Q 001060 1100 LAGRQVYIEERR 1111 (1169)
Q Consensus 1100 i~g~~l~V~~~r 1111 (1169)
|+||.|..+..-
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999876543
No 405
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.07 E-value=0.21 Score=58.18 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=53.6
Q ss_pred eEEEEecCCCCCCH------HHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec-eEE
Q 001060 1034 KSVYVRNLPSTVTA------FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG-RQV 1105 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~------~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g-~~l 1105 (1169)
..|+|-|+|---.. .-|..+|+++|+|..+-+ .-...|.++||.|++|.+..+|+.|++. +|+.|+- +..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~--P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYY--PIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceee--ccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 67899999843222 245778999999987543 3233455999999999999999999987 7888764 345
Q ss_pred EE
Q 001060 1106 YI 1107 (1169)
Q Consensus 1106 ~V 1107 (1169)
.|
T Consensus 137 ~v 138 (698)
T KOG2314|consen 137 FV 138 (698)
T ss_pred Ee
Confidence 55
No 406
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.02 E-value=0.028 Score=67.58 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 403 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~ 403 (1169)
+...++|+.+ ..|..--+..++-....|..+++.--+.+++|.+.
T Consensus 60 Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 60 AINAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQL 104 (556)
T ss_dssp HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHH
T ss_pred HHHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHH
Confidence 3444555543 22333222334444445666677777777776654
No 407
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.97 E-value=12 Score=45.24 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=28.0
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
.+++++|..+-++ +|.-.+.+|+.+|+++.+..++++|.+.|.++
T Consensus 786 ~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 786 TQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHhHhhhhh----CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3566666544443 32334567777777777777777777776665
No 408
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=35 Score=43.61 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=21.1
Q ss_pred hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhC
Q 001060 514 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 548 (1169)
Q Consensus 514 ~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~ 548 (1169)
.|-+++-+.+++.+|-+..-...++-.++.+-...
T Consensus 1292 rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred cCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 66677777777777766554445555555544443
No 409
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.96 E-value=0.18 Score=36.38 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccC
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVT 166 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P 166 (1169)
.+|..++.++...|++++|.+.|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4677777777777777777777777777765
No 410
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.83 E-value=0.27 Score=53.48 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=51.5
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a 432 (1169)
.+.|+.++|..+|+.+|...|.++++.++++.|.+..+++-+|..+|-+|+.+. |.+.++....+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis-P~nseALvnR~ 191 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTIS-PGNSEALVNRA 191 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC-CCchHHHhhhh
Confidence 567888888888888888888888888888888888778888888888888876 66655554433
No 411
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=92.77 E-value=0.08 Score=55.93 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=53.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCC--------ccccc----EEEEEECCHHHHHHHHHh-CCCee
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD--------VVGVC----YAFVEFEDISGVQNAIQA-SPIQL 1100 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~--------g~~~g----~afV~F~~~~~a~~Ai~~-~~~~i 1100 (1169)
.-||+++||+.+...-|+++|+.||.|-+|-+. ....+ |.+++ -|.|+|.+...|.++... |+..|
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylq-pE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQ-PEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEec-chhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 479999999999999999999999999886332 22222 22222 367999999988887766 89999
Q ss_pred eceE
Q 001060 1101 AGRQ 1104 (1169)
Q Consensus 1101 ~g~~ 1104 (1169)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 412
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.50 E-value=0.036 Score=66.63 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=8.7
Q ss_pred HhHHHHHHHHhhh
Q 001060 724 GSYFVGQYYQVLQ 736 (1169)
Q Consensus 724 g~~Fv~~YY~~l~ 736 (1169)
+..++...|+.|.
T Consensus 304 ~~~~L~~i~~~L~ 316 (556)
T PF05918_consen 304 ARQLLPSIFQLLK 316 (556)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566777777664
No 413
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.48 E-value=0.2 Score=35.66 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC
Q 001060 101 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL 133 (1169)
Q Consensus 101 aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~ 133 (1169)
++..++..+.+. |+.++|++.|++++..||+
T Consensus 2 a~~~~a~~~~~~--g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKL--GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHc--cCHHHHHHHHHHHHHHCcC
Confidence 344444444442 3555555555555555554
No 414
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.41 E-value=7 Score=40.65 Aligned_cols=114 Identities=17% Similarity=0.104 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhccCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 374 KVVKLYERCLIACANYPE---YWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e---~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
+.....++....++...- .-+.++..+...+++++|...++.++..- .+ ...+-+.++++..++|.+|+|+++
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT-KDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344445555555543322 33455666667899999999999888532 22 234566689999999999999999
Q ss_pred HHHHhhhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 448 YQLVHTETSPGLL-EAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 448 ~~~a~~~~~P~~~-~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
+... ..++.. .+-...++++...|+-++|+.-|++|+....
T Consensus 149 L~t~---~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 149 LDTI---KEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred Hhcc---ccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 8864 133222 2345678999999999999999999999863
No 415
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.24 E-value=0.15 Score=60.94 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=55.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..++||+|+...+..+-++.+...||.|.++. +.. |||++|..+.....|+.. +...++|..+.+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~k---r~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWK---RDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhh---hhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 36899999999999999999999999998643 222 999999999999999977 6788888876553
No 416
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=1.6 Score=50.16 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=105.5
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHhCC-HHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH---EARVGS-MDKVV 155 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~---e~~~~~-~e~A~ 155 (1169)
.++.+++....+|+.||.++.+|.-..-.+++....++..=.++.+++|+.+|.|+..|..-=-+ -.+.++ ..+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 57789999999999999999999999999987665568888999999999999999998543222 222222 34556
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhh-----cC---CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINT-----YG---DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 220 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~-----~~---~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~ 220 (1169)
+...+++..++.|...|.+-..++... .| ..+....-+++...++=+|+.....|.. ..|++..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY-~rWLl~~ 241 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY-HRWLLGR 241 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee-hHHhhcc
Confidence 788899998999999997765555421 23 2556667788888888788887788876 5555554
No 417
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.03 E-value=0.37 Score=52.46 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=54.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 467 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 467 (1169)
.+.-+.+.|+.++|..+|+.|+.+. |.++.+.+.++.|.+.++++-+|-.+|-++ +.+.|.+.++..++.
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A-LtisP~nseALvnR~ 191 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKA-LTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhhee-eeeCCCchHHHhhhh
Confidence 3334556788888888888888876 788888888888888888888888888887 677888877665543
No 418
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.03 E-value=4.5 Score=49.06 Aligned_cols=183 Identities=19% Similarity=0.185 Sum_probs=115.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHH---HHHH----HHHH---HcCCHHHHH
Q 001060 376 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH---LFAA----RFKE---QNGDIDGAR 445 (1169)
Q Consensus 376 ~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~---~~~a----~~~e---~~g~~~~A~ 445 (1169)
.-+|.=+|...|- --.++..++--.||-+.++..+.++.+...=..+-.- +.|- .+.- ...+++.|.
T Consensus 177 ~G~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 177 FGLFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 3455566655553 3455555555578999999999998763211112111 1111 1111 355778899
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH-HHHHHHHHHHHhCCHHHHHHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML-YAQYSRFLHLVSRNAEKARQIL 524 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l-~~~~a~~~~~~~g~~e~Ar~i~ 524 (1169)
+++... .+..|+..-..+..+.++...|++++|+.+|++++..... .+....+ +..++..... ..++++|...|
T Consensus 254 ~lL~~~-~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~---~~Ql~~l~~~El~w~~~~-~~~w~~A~~~f 328 (468)
T PF10300_consen 254 ELLEEM-LKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE---WKQLHHLCYFELAWCHMF-QHDWEEAAEYF 328 (468)
T ss_pred HHHHHH-HHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh---HHhHHHHHHHHHHHHHHH-HchHHHHHHHH
Confidence 999997 7789998888899999999999999999999999853311 1122222 3334444333 88999999999
Q ss_pred HHHhhhcCCCHHHHHH-HHHhHhhCCCh----hHHHHHHHHHHHHhh
Q 001060 525 VDSLDHVQLSKPLLEA-LIHFESIQSSP----KQIDFLEQLVDKFLM 566 (1169)
Q Consensus 525 ~kAl~~~p~s~~l~~~-~a~~E~~~~~~----~~~~~~r~l~eral~ 566 (1169)
.+.++...-+..++.- .+-....++.. ...+.+..+|.++-.
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999988777765541 11122222222 224666777777633
No 419
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=91.94 E-value=2 Score=41.56 Aligned_cols=111 Identities=10% Similarity=0.124 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCceEEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVLVMVS 801 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~ilv~v~ 801 (1169)
...+..|+..++ .+++.|..+|.++..+....|....|...|.+..+.+....... +.+.....+-..++..++.+.
T Consensus 7 ~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~~~~ 86 (128)
T TIGR02246 7 RALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIVHAI 86 (128)
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEEEEE
Confidence 467889999988 59999999999987765345554455555444333333222221 334333333222233333333
Q ss_pred EEEEecCcccc---ceeEEEEEEEeeCCeEEEEcceE
Q 001060 802 GSVKTKEFCRR---RKFVQTFFLAPQEKGYFVLNDIF 835 (1169)
Q Consensus 802 G~~~~~~~~~~---~~F~q~F~L~~~~~~y~v~nDif 835 (1169)
..+...+.... ....-||++...+++|.|..|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~t~~~~~~~g~W~I~~~h~ 123 (128)
T TIGR02246 87 QTITAPGKGRARPDAAVRLTFVAVKRDGRWLLAADHN 123 (128)
T ss_pred EEEEcCCCCCCCCCcceEEEEEEEeeCCeEEEEeccC
Confidence 33444332111 12344667778889999998865
No 420
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=91.89 E-value=0.36 Score=57.14 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCCeeeeeEEee--cCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1048 FEIEEEFQNFGRIKPDGVFVR--NRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1048 ~~L~~~F~~~G~i~~~~i~~~--~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++++.-+++||.|+.|.|... +....-+-|..||+|.+.+++++|.+. .|..|+||.|...+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 456777789999999765322 111223456789999999999999988 79999999987764
No 421
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=3.2 Score=44.27 Aligned_cols=123 Identities=13% Similarity=0.071 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
-..++-+.+.++|.+|+..|.++|.+ ..-+.+-++-|+.+-. ++......+.+.|.
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~----------------l~~L~lkEkP~e~eW~--------eLdk~~tpLllNy~ 237 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIIC----------------LRNLQLKEKPGEPEWL--------ELDKMITPLLLNYC 237 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHH----------------HHHHHhccCCCChHHH--------HHHHhhhHHHHhHH
Confidence 33455566778888888888888752 1112222333443321 12222345788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
+++...|++-++++-....+..+ |.+..+++..|+.....=+.++|+.-|.++ ++++|....+..+-
T Consensus 238 QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~v-L~ldpslasvVsrE 304 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKV-LELDPSLASVVSRE 304 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHH-HhcChhhHHHHHHH
Confidence 88888888888888888888777 889999999998888778889999999998 78899876665443
No 422
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.52 E-value=0.45 Score=33.84 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001060 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 137 ~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 168 (1169)
.++.++.++.+.|++++|+++|++++..+|.|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57788999999999999999999999999975
No 423
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.42 E-value=0.74 Score=55.84 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=4.7
Q ss_pred HHHHhhhcCCC
Q 001060 524 LVDSLDHVQLS 534 (1169)
Q Consensus 524 ~~kAl~~~p~s 534 (1169)
|-.||-..|.+
T Consensus 311 ~INal~t~p~d 321 (1102)
T KOG1924|consen 311 FINALVTSPSD 321 (1102)
T ss_pred HHHHhcCCHHH
Confidence 44444444433
No 424
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.32 E-value=1.6 Score=52.12 Aligned_cols=131 Identities=20% Similarity=0.133 Sum_probs=79.6
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 369 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 448 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 448 (1169)
.+|++.++...+..-..-.-..+.-.+.+.||+++|-.+.|+.+. .+++..+.+| .+.|+++.|.++.
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~~rFeLA---l~lg~L~~A~~~a 341 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFV---------TDPDHRFELA---LQLGNLDIALEIA 341 (443)
T ss_dssp TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS---------S-HHHHHHHH---HHCT-HHHHHHHC
T ss_pred cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhc---------CChHHHhHHH---HhcCCHHHHHHHH
Confidence 567777666665221111122567888899999999777765332 3455555544 4789999998764
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Q 001060 449 QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 528 (1169)
Q Consensus 449 ~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl 528 (1169)
+. -++...|.++++...+.|+++-|+.+|.++-... .+ -|++...|+.+.-+++.+.|.
T Consensus 342 ~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~----------~L-----~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 342 KE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS----------GL-----LLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp CC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH----------HH-----HHHHHHCT-HHHHHHHHHHHH
T ss_pred Hh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc----------cc-----HHHHHHhCCHHHHHHHHHHHH
Confidence 43 2367799999999999999999999998764443 12 123345888888888887776
Q ss_pred hhcC
Q 001060 529 DHVQ 532 (1169)
Q Consensus 529 ~~~p 532 (1169)
+..-
T Consensus 401 ~~~~ 404 (443)
T PF04053_consen 401 ERGD 404 (443)
T ss_dssp HTT-
T ss_pred HccC
Confidence 5543
No 425
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=91.18 E-value=0.31 Score=51.77 Aligned_cols=76 Identities=25% Similarity=0.277 Sum_probs=61.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C----CCeeeceEEEEE
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S----PIQLAGRQVYIE 1108 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~----~~~i~g~~l~V~ 1108 (1169)
..|||.||...++-+.|.+.|+.||+|...-+.+.++ ++..+=++|+|...-.+.+|+.. + +.+..++.+-|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r--~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR--GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc--ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 6799999999999999999999999998864444443 56777889999999999999876 2 456667777777
Q ss_pred ecc
Q 001060 1109 ERR 1111 (1169)
Q Consensus 1109 ~~r 1111 (1169)
...
T Consensus 110 P~e 112 (275)
T KOG0115|consen 110 PME 112 (275)
T ss_pred hhh
Confidence 654
No 426
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=50 Score=41.29 Aligned_cols=76 Identities=8% Similarity=0.054 Sum_probs=53.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 001060 140 KYADHEARVGSMDKVVEVYERAVQGVTY--SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 217 (1169)
Q Consensus 140 ~~a~~e~~~~~~e~A~~l~eraL~~~P~--s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e 217 (1169)
.-++|.++.+.|++|.++-+......|. =.++|..|+..++ ..+++++|-...-+.+. . ....|.....-.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl-~~~~y~~Aas~~p~m~g---n---~~~eWe~~V~~f 433 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLL-FEGKYDEAASLCPKMLG---N---NAAEWELWVFKF 433 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHH-hcchHHHHHhhhHHHhc---c---hHHHHHHHHHHh
Confidence 4577889999999999876554443332 3578999999998 78888888777666654 2 345677766654
Q ss_pred HHhhh
Q 001060 218 YMQQE 222 (1169)
Q Consensus 218 ~~~~~ 222 (1169)
...++
T Consensus 434 ~e~~~ 438 (846)
T KOG2066|consen 434 AELDQ 438 (846)
T ss_pred ccccc
Confidence 44443
No 427
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.04 E-value=0.19 Score=55.93 Aligned_cols=86 Identities=20% Similarity=0.142 Sum_probs=56.9
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 482 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~i 482 (1169)
.|.+++|+..|.++|++. |....+|-..+.+..+.++...|+.-|..+ ++++|+...-|......++-+|+++++...
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A-~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFA-IEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhh-hccCcccccccchhhHHHHHhhchHHHHHH
Confidence 466777777777777665 555666666666666666666666666666 566776666666666666666777777777
Q ss_pred HHHHHHhh
Q 001060 483 YEQAIAIE 490 (1169)
Q Consensus 483 y~~Al~~~ 490 (1169)
+..++++.
T Consensus 205 l~~a~kld 212 (377)
T KOG1308|consen 205 LALACKLD 212 (377)
T ss_pred HHHHHhcc
Confidence 66666654
No 428
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.03 E-value=8.1 Score=43.26 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~-~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
.+.-|.+.++|..|+..|-++|+. +.-|+. +.-++.+-+....-.|++-+++.-..++|...|.|...+++-+.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~-----kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKK-----KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhh-----cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 356677888888899999888872 333332 33445555555555677888888888888888888888888888
Q ss_pred HHHHcCChHHHHHHHHHHHHHh
Q 001060 399 CMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
++.....+++|.+.++..+++.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhh
Confidence 8888777888877777776654
No 429
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.03 E-value=46 Score=40.81 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=70.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH--HHHHH----------HHHHHHhCCHHH
Q 001060 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG--YWKKY----------ADHEARVGSMDK 153 (1169)
Q Consensus 86 ~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~--~W~~~----------a~~e~~~~~~e~ 153 (1169)
+...+.++.||+ ...|..|++...+. -.++-|..+|-+ .-+-.+ +-+.+ +++-.-.|.|++
T Consensus 680 edA~qfiEdnPH-prLWrllAe~Al~K--l~l~tAE~AFVr----c~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 680 EDAIQFIEDNPH-PRLWRLLAEYALFK--LALDTAEHAFVR----CGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred HHHHHHHhcCCc-hHHHHHHHHHHHHH--HhhhhHhhhhhh----hccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 334566888887 78999999986652 234444433332 222222 22222 222333478999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHHhhhHHHHHHHH
Q 001060 154 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL---SFPLWDKYIEYEYMQQEWSRVAMIY 230 (1169)
Q Consensus 154 A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~---s~~lw~~y~~~e~~~~~~~~a~~iY 230 (1169)
|+++|-.+=... .-++|.+.+ |+.-.+.+++..+ |.|.. -...|............|+.|++.|
T Consensus 753 aek~yld~drrD-LAielr~kl--------gDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 753 AEKLYLDADRRD-LAIELRKKL--------GDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred hhhhhhccchhh-hhHHHHHhh--------hhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999996654432 233443333 4443344444322 11221 2456777776666677888888888
Q ss_pred HHH
Q 001060 231 TRI 233 (1169)
Q Consensus 231 ~r~ 233 (1169)
...
T Consensus 820 ~~~ 822 (1189)
T KOG2041|consen 820 SYC 822 (1189)
T ss_pred Hhc
Confidence 665
No 430
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=90.94 E-value=5.6 Score=48.01 Aligned_cols=79 Identities=13% Similarity=0.014 Sum_probs=58.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.+.+-+++.+++.+..|++++|-.. .|..+++ ..++..+...|-++|+|....++++|+..+...+-.|.+.|....
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l-~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDL-SENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccch-hhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 34667788999999999999999632 2334333 223332333578999999999999999998888888988886654
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 388 ~ 388 (944)
T KOG4307|consen 388 N 388 (944)
T ss_pred c
Confidence 3
No 431
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.85 E-value=0.37 Score=35.57 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001060 137 YWKKYADHEARVGSMDKVVEVYERAVQG 164 (1169)
Q Consensus 137 ~W~~~a~~e~~~~~~e~A~~l~eraL~~ 164 (1169)
.|..++.++.+.|++++|+++|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3778899999999999999999996654
No 432
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=90.76 E-value=1.4 Score=41.98 Aligned_cols=109 Identities=8% Similarity=0.095 Sum_probs=65.0
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcC-CcccchhhHHHHHHHHhcCCCccee--EeeeeccccCCCceEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDG-DSTESASSMLDIHSLVISLNFTAIE--IKTINSLGSWNGGVLVMV 800 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g-~~~~~~~~~~~I~~~~~~l~~~~~~--i~~~d~q~~~~~~ilv~v 800 (1169)
..++++|++.+. .+.+.|..+|.++.+++.... ....|...+.+..+.... .+..+. +..+..+. .++.+++..
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~-~~~~a~~~~ 79 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFE-SFRPISIEFEDVQVSV-SGDVAVVTG 79 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHH-THSEEEEEEEEEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhh-hCceEEEEEEEEEEEE-CCCEEEEEE
Confidence 367899998887 677999999998765553222 222455554433333222 123443 44444444 233445555
Q ss_pred EEEEEe--cCccccceeEEEEEEEeeCCeEEEEcceE
Q 001060 801 SGSVKT--KEFCRRRKFVQTFFLAPQEKGYFVLNDIF 835 (1169)
Q Consensus 801 ~G~~~~--~~~~~~~~F~q~F~L~~~~~~y~v~nDif 835 (1169)
.+.+.. ++......+..||+|...+++|.|...-+
T Consensus 80 ~~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H~ 116 (121)
T PF13474_consen 80 EFRLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIHW 116 (121)
T ss_dssp EEEEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEecCCccceeeEEEEEEEEEECCEEEEEEEEe
Confidence 555543 33333567899999999999999987554
No 433
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.70 E-value=0.58 Score=33.66 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
++|+.++.++...|++++|...|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456666666666666666666666666554
No 434
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.61 E-value=0.65 Score=51.80 Aligned_cols=117 Identities=13% Similarity=-0.004 Sum_probs=86.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHH--HHHHHHHHHhhcCCHHH
Q 001060 111 KLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDI--WLHYCIFAINTYGDPET 188 (1169)
Q Consensus 111 ~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~l--w~~y~~~~~~~~~~~e~ 188 (1169)
.+.+|.+++|+..|.+++.+.|.+..++.+-+..++++++...|+.=|..++.+.|++..- |..|+.- .+++.++
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r---llg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER---LLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH---HhhchHH
Confidence 3346789999999999999999999999999999999999999999999999998876543 5555554 4588999
Q ss_pred HHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001060 189 IRRLFERGLAYVGTDYLS-FPLWDKYIEYEYMQQEWSRVAMIYTRILE 235 (1169)
Q Consensus 189 Ar~~~erAl~~~g~d~~s-~~lw~~y~~~e~~~~~~~~a~~iY~r~L~ 235 (1169)
+++.|+.+++ .|+.. ..-|..-.. -..+.++.=++.|.|.++
T Consensus 201 aa~dl~~a~k---ld~dE~~~a~lKeV~--p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACK---LDYDEANSATLKEVF--PNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHh---ccccHHHHHHHHHhc--cchhhhhhchhHHHHHHH
Confidence 9999999998 44432 223332221 222445555556666554
No 435
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.55 E-value=0.41 Score=55.77 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=61.2
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 482 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~i 482 (1169)
-++++.|...|.+||++. |++..++-..+....+.+++..|+.=+.++ ++++|.....|++.+....+++.+.+|...
T Consensus 17 ~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~ka-ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKA-IELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhh-hhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 345666777777777665 666666666666666666777776666666 667777777777777777777777777777
Q ss_pred HHHHHHhhhC
Q 001060 483 YEQAIAIEKG 492 (1169)
Q Consensus 483 y~~Al~~~~~ 492 (1169)
|+......|+
T Consensus 95 l~~~~~l~Pn 104 (476)
T KOG0376|consen 95 LEKVKKLAPN 104 (476)
T ss_pred HHHhhhcCcC
Confidence 7777777654
No 436
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.51 E-value=12 Score=44.72 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=98.0
Q ss_pred HHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh----c----------------cChHHHH---HHHHHHHHcC
Q 001060 383 LIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV----K----------------RLPEIHL---FAARFKEQNG 439 (1169)
Q Consensus 383 L~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~----p----------------~~~~l~~---~~a~~~e~~g 439 (1169)
|+..|.+.+-.+.++.+...+|+.+.|..+++|++=.+. | .+..+|+ .+...+.+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 334588999999999999999999999999888875332 1 1222322 2455667788
Q ss_pred CHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC--
Q 001060 440 DIDGARAAYQLVHTETSPG-LLEAIIKHANME-RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR-- 515 (1169)
Q Consensus 440 ~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e-~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g-- 515 (1169)
=+.-|.+.++-+ ..++|. ++-..+..++++ .|..+|.=.+.+++..-....- ...++. .+-..+|+|+....-
T Consensus 357 C~rTA~E~cKll-lsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l-~~~PN~-~yS~AlA~f~l~~~~~~ 433 (665)
T KOG2422|consen 357 CWRTALEWCKLL-LSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL-SQLPNF-GYSLALARFFLRKNEED 433 (665)
T ss_pred ChHHHHHHHHHH-hhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH-hhcCCc-hHHHHHHHHHHhcCChh
Confidence 888899988876 788998 776666666654 4556676666666655222210 001111 123566777655222
Q ss_pred CHHHHHHHHHHHhhhcCC
Q 001060 516 NAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 516 ~~e~Ar~i~~kAl~~~p~ 533 (1169)
+...|+..+.+|+++.|.
T Consensus 434 ~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 434 DRQSALNALLQALKHHPL 451 (665)
T ss_pred hHHHHHHHHHHHHHhCcH
Confidence 268899999999999984
No 437
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=90.17 E-value=0.46 Score=53.12 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=57.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEe--ecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEE
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV--RNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~--~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~ 1108 (1169)
..|-|.||.+.+|.++++.+|...|.|..+.+.- .+..-....-.|||.|.|..++..|-.+..+.|-|+-|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 4789999999999999999999999999876532 11111123347999999999999888776677777776664
No 438
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.11 E-value=2.8 Score=43.46 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE--AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 505 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~--~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~ 505 (1169)
-+.+|..+...+++++|...++.++....-.++. +-++++.+...+|.+|+|..+++..-... -.+.+...
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-------w~~~~~el 164 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-------WAAIVAEL 164 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-------HHHHHHHH
Confidence 3456677778899999999999863221122222 35778888888999999988876433221 11334445
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 506 YSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 506 ~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
-++++.. .|+-++||.-|++|++..+.
T Consensus 165 rGDill~-kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 165 RGDILLA-KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hhhHHHH-cCchHHHHHHHHHHHHccCC
Confidence 6777776 99999999999999998743
No 439
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.10 E-value=0.44 Score=55.48 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=88.4
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
..++++.|+.+|-++|...|++..+|-.-+..+.+.+++..|+.-+.+|++.. |.....|+..|......+.+.+|+..
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHHHH
Confidence 45688999999999999999999999999888889999999999999999987 88888999999999999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHH
Q 001060 448 YQLVHTETSPGLLEAIIKHANM 469 (1169)
Q Consensus 448 ~~~a~~~~~P~~~~~~~~~a~~ 469 (1169)
|++. ..+.|+...+-......
T Consensus 95 l~~~-~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 95 LEKV-KKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHh-hhcCcCcHHHHHHHHHH
Confidence 9997 78899988776555444
No 440
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.94 E-value=42 Score=39.89 Aligned_cols=192 Identities=14% Similarity=-0.011 Sum_probs=109.4
Q ss_pred HHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 337 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 337 ~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
|-.+|- -++-.|++...+ ..+++..-.+-...-+..+..+.|.. ..+-..++.++++|... .-+.-..+.+|.
T Consensus 52 yisg~~--~~s~~~l~d~~l---~~~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ 124 (711)
T COG1747 52 YISGII--SLSKQLLDDSCL---VTLLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERL 124 (711)
T ss_pred HHHHHH--HhhhccccchHH---HHHHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHH
Confidence 444443 355566664433 33344333333344566677777755 34445666777777655 445566788887
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP-----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P-----~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
++.+ =++..+--.++..+++ ++...+...|.++.-...| .--++|-++..+- -.+.+....+..+.-....
T Consensus 125 ve~d-fnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg 200 (711)
T COG1747 125 VEYD-FNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG 200 (711)
T ss_pred HHhc-chhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc
Confidence 7765 5566666677777777 7777888888887544444 2334566555432 3455665555555444332
Q ss_pred CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHh
Q 001060 492 GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 544 (1169)
Q Consensus 492 ~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~ 544 (1169)
.....+..+...-.|....++.+|..|+.-.|+++-.+.......+.+
T Consensus 201 -----~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 201 -----EGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred -----cchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 122333333333333435578888888888888776554444444433
No 441
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=89.89 E-value=3 Score=46.59 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=61.9
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++.-+-|-+|... ++-+.|-.+|-.||.|.+|+. ++.+ .|-|.|+..|..++++||.. ++..+-|.+|.|..
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkF-mkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKF-MKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEE-eecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 5688899999864 677889999999999999764 4333 36899999999999999987 78888888889887
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
.+.
T Consensus 360 SkQ 362 (494)
T KOG1456|consen 360 SKQ 362 (494)
T ss_pred ccc
Confidence 664
No 442
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.82 E-value=1.4 Score=48.00 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHhCCCCHHHH----------------HHHHHHHHHhCCHHHHHHHHH
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAF-LAEFPLCYGYW----------------KKYADHEARVGSMDKVVEVYE 159 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~-l~~~P~~~~~W----------------~~~a~~e~~~~~~e~A~~l~e 159 (1169)
.|+.-|..+++-.... ...|++++++.... =..+|...-.| .+.+..+...|.+.+|+.+.+
T Consensus 225 ~Dv~e~es~~rqi~~i-nltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~q 303 (361)
T COG3947 225 YDVQEYESLARQIEAI-NLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQ 303 (361)
T ss_pred ccHHHHHHHhhhhhcc-ccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4788888888876654 25666666555444 23455555444 234556777788888888888
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001060 160 RAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERG 196 (1169)
Q Consensus 160 raL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erA 196 (1169)
|++..+|.+...|+.+...+. ..||-=.+.+.|+|.
T Consensus 304 r~ltldpL~e~~nk~lm~~la-~~gD~is~~khyery 339 (361)
T COG3947 304 RALTLDPLSEQDNKGLMASLA-TLGDEISAIKHYERY 339 (361)
T ss_pred HHhhcChhhhHHHHHHHHHHH-HhccchhhhhHHHHH
Confidence 888888888888888888877 677755555555543
No 443
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.55 E-value=15 Score=38.72 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001060 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 517 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 517 (1169)
.|+ +.|+..|-++...-.=+.+++.+.+|.++.+. +.++++.+|-+++++....+ ...|+++..++.+.+. .|++
T Consensus 120 ~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLas~~~~-~~~~ 194 (203)
T PF11207_consen 120 FGD-QEALRRFLQLEGTPELETAELQYALATYYTKR-DPEKTIQLLLRALELSNPDD--NFNPEILKSLASIYQK-LKNY 194 (203)
T ss_pred cCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH-hcch
Confidence 344 67888777752222224688899999998755 78999999999999876542 3458899999999877 8988
Q ss_pred HHHH
Q 001060 518 EKAR 521 (1169)
Q Consensus 518 e~Ar 521 (1169)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 444
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.25 E-value=53 Score=38.81 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=88.2
Q ss_pred HHHHHHHHHcC--ChHHHHHHHHHHHHHhhcc--ChHHHHHHHHHHHH-cCCHHHHHHHHHHHhh--hcCCChHH----H
Q 001060 394 IRYVLCMEASG--SMDLAHNALARATHVFVKR--LPEIHLFAARFKEQ-NGDIDGARAAYQLVHT--ETSPGLLE----A 462 (1169)
Q Consensus 394 ~~~a~~l~~~g--~~e~A~~vl~rAl~~~~p~--~~~l~~~~a~~~e~-~g~~~~A~~~~~~a~~--~~~P~~~~----~ 462 (1169)
.-+|..+..++ ++..++++++-.+..-++. ....++.+|.++.. ..+++-|+..+++++. +..|...+ .
T Consensus 11 lGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a 90 (629)
T KOG2300|consen 11 LGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQA 90 (629)
T ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHH
Confidence 34566666666 6677777777666543332 23466777777665 5788889998888743 33555533 4
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 463 IIKHANMERRLG-NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 463 ~~~~a~~e~r~g-~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
+..++.++.... .+..++.++++||++..+. +.-.-.+..+++.+... .+|+..|.+++.-+.+.
T Consensus 91 ~SlLa~lh~~~~~s~~~~KalLrkaielsq~~--p~wsckllfQLaql~~i-dkD~~sA~elLavga~s 156 (629)
T KOG2300|consen 91 ASLLAHLHHQLAQSFPPAKALLRKAIELSQSV--PYWSCKLLFQLAQLHII-DKDFPSALELLAVGAES 156 (629)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHhh-hccchhHHHHHhccccc
Confidence 566667776666 7889999999999987532 11112355677777544 88999999987665554
No 445
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.19 E-value=0.98 Score=48.65 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1048 FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1048 ~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++++...++||.|..|-|+......-.-----||+|+..+++.+|+-. ||..|+||.++..+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 466777889999999866554322111223569999999999999866 89999999887644
No 446
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.80 E-value=0.8 Score=33.74 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 462 AIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 462 ~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
.|..++.++.+.|++++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 36778999999999999999999977654
No 447
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=87.72 E-value=2.5 Score=35.37 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=40.4
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcC----CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNF----GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~----G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~ 1095 (1169)
..|+|+|+. +++.++|+.+|..| ++. +|. ++ +.. .|=|.|.+.+.|.+||.+
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IE-WI-dDt------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIE-WI-DDT------SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEE-Ee-cCC------cEEEEECCHHHHHHHHHc
Confidence 579999996 68888999999988 543 333 34 432 578999999999999864
No 448
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.53 E-value=0.74 Score=48.46 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=48.6
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 423 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~ 423 (1169)
.+.+|.+-+..+|.++|...|....-|++++.+.++.|+++.|...|+..+++.+++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 356788888889999999999989999999999899999999999999988887544
No 449
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.52 E-value=6.2 Score=41.04 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 503 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~ 503 (1169)
.|..+|.++.+.|++++|++.|.++ .+.... -.++++..+.+..-.+++..+...+.++-.....-.+......+-
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4445555555555555555555554 221111 234455555555556666666666666655432211111111122
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 504 AQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 504 ~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
..-+-... ..+++.+|-+.|-.++..+.
T Consensus 117 ~~~gL~~l-~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANL-AQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHH-HhchHHHHHHHHHccCcCCC
Confidence 22222222 37788888888877765443
No 450
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.37 E-value=30 Score=40.42 Aligned_cols=140 Identities=15% Similarity=0.076 Sum_probs=93.5
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------------------------cCCHHH---HHHHHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--------------------------ANYPEY---WIRYVLCMEA 402 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~--------------------------~~~~e~---W~~~a~~l~~ 402 (1169)
.|-.++....+.+.+..+||...|..+.||||-.+ +.+-.+ -++++..+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 55667888888888889999876666666665433 122234 4466677778
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHH-HHHcCCHHHHHHHHHHHhhhcCCC----hHHHHHHHHHHHHHcCCH-
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARF-KEQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNL- 476 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~-~e~~g~~~~A~~~~~~a~~~~~P~----~~~~~~~~a~~e~r~g~~- 476 (1169)
.|-+..|.++.+-.+.+.+.++|.--+.+.++ ..+.++++=-..+++......... .+.+-+..+.....+++.
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~ 195 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEE 195 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcc
Confidence 89999999999888888754366544444443 456778877777777642211111 122445556666667776
Q ss_pred --------------HHHHHHHHHHHHhhh
Q 001060 477 --------------EDAFSLYEQAIAIEK 491 (1169)
Q Consensus 477 --------------e~A~~iy~~Al~~~~ 491 (1169)
++|...+.+|+..+|
T Consensus 196 ~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 196 SSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred ccccccccccccchhHHHHHHHHHHHHhH
Confidence 899999999999985
No 451
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=87.29 E-value=0.54 Score=58.10 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=61.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec--eEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~ 1108 (1169)
..+.++|++|+.++....|...|..||.|..|++ +. +--|++|.|++...++.|+.. .|.-|+| ++++|.
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY--RH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeec--cc-----CCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 5689999999999999999999999999997543 21 235999999999999999976 6888886 568888
Q ss_pred ecc
Q 001060 1109 ERR 1111 (1169)
Q Consensus 1109 ~~r 1111 (1169)
++.
T Consensus 527 la~ 529 (975)
T KOG0112|consen 527 LAS 529 (975)
T ss_pred ccc
Confidence 765
No 452
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.25 E-value=30 Score=37.60 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001060 115 DNIVKIRRVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQG 164 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~ 164 (1169)
...++|.+-|.+.|++.+... .+.+..+.+..+++++++..+.|.++|..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 478889999999999998864 34466777888999999999988887754
No 453
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.17 E-value=94 Score=39.22 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHh---hcCCH
Q 001060 116 NIVKIRRVYDAFLAEFPLC----YGYWKKYADHEA-RVGSMDKVVEVYERAVQGVTY-SVDIWLHYCIFAIN---TYGDP 186 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~----~~~W~~~a~~e~-~~~~~e~A~~l~eraL~~~P~-s~~lw~~y~~~~~~---~~~~~ 186 (1169)
-|..|+++++.++..++.. ....+.|+.++. ...+++.|+..++|++.+.-. +..=+...+.+++- ...++
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 3556788999999766665 356788888877 668999999999999877622 11111222333221 12344
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHhcch
Q 001060 187 ETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM-----QQEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 187 e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~-----~~~~~~a~~iY~r~L~~p~ 238 (1169)
..|....+++++..... ....|...++|..- .++...|...++.+.....
T Consensus 116 ~~a~~~l~~~I~~~~~~--~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 116 KAALKNLDKAIEDSETY--GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred HHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 45999999999876542 33456666666522 2578889999999988753
No 454
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.15 E-value=14 Score=44.34 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
-...+.|+++.|-.+.| |.. ..+++.-+.++. +.|+++.|.++... -+++..|-.++....++
T Consensus 298 ~~~i~~fL~~~G~~e~A-------L~~-~~D~~~rFeLAl---~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELA-------LQF-VTDPDHRFELAL---QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHTT-HHHH-------HHH-SS-HHHHHHHHH---HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHH-------Hhh-cCChHHHhHHHH---hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHc
Confidence 55667788888865554 433 445676666664 67999888755421 24778999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001060 439 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 518 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e 518 (1169)
|+++-|.++|.++ .. |-.+..++.-.|+.+....+.+.|..... +-..+.-+ + ..|+++
T Consensus 361 g~~~lAe~c~~k~-~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----------~n~af~~~-~-~lgd~~ 419 (443)
T PF04053_consen 361 GNIELAEECYQKA-KD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD----------INIAFQAA-L-LLGDVE 419 (443)
T ss_dssp TBHHHHHHHHHHC-T---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----------HHHHHHHH-H-HHT-HH
T ss_pred CCHHHHHHHHHhh-cC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC----------HHHHHHHH-H-HcCCHH
Confidence 9999999999996 21 34455566678999888888887776542 11122112 1 278899
Q ss_pred HHHHHHHHH
Q 001060 519 KARQILVDS 527 (1169)
Q Consensus 519 ~Ar~i~~kA 527 (1169)
+..+++.++
T Consensus 420 ~cv~lL~~~ 428 (443)
T PF04053_consen 420 ECVDLLIET 428 (443)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 888887754
No 455
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.91 E-value=7.1 Score=41.94 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 460 LEAIIKHANMERRLGNL-------EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 460 ~~~~~~~a~~e~r~g~~-------e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
..++++.+.+++.+++. ..|...|+++++.............+....+.+.++ .|++++|.+.|.+.+....
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcCCC
Confidence 44677777888777774 456666666665543211111223345556777666 9999999999999998654
Q ss_pred CCH
Q 001060 533 LSK 535 (1169)
Q Consensus 533 ~s~ 535 (1169)
.+.
T Consensus 197 ~s~ 199 (214)
T PF09986_consen 197 ASK 199 (214)
T ss_pred CCC
Confidence 443
No 456
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.62 E-value=1.1 Score=30.55 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 136 GYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 136 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
..|..++..+...+++++|+..|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45777777777777888888888777776553
No 457
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.36 E-value=6.6 Score=35.84 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001060 121 RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 168 (1169)
Q Consensus 121 r~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 168 (1169)
...+++.++.+|++....+.++..++..|+++.|.+.+-.+++.++..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 456788999999999999999999999999999999999999987643
No 458
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=85.73 E-value=0.7 Score=52.04 Aligned_cols=71 Identities=28% Similarity=0.448 Sum_probs=54.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C-CCeeeceEEEEEeccC
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S-PIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~-~~~i~g~~l~V~~~r~ 1112 (1169)
.+|++||.+.++.++|+.+|...-.--+..+++. .||+||...+..-+.+|++. + ..++.|+++.|+..-+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 5899999999999999999964311111113331 27999999999999999988 4 5788999999986543
No 459
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.26 E-value=29 Score=41.79 Aligned_cols=142 Identities=12% Similarity=0.030 Sum_probs=90.4
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--------------------hcCCChHH---HHHHHHHHHHHcCCHHH
Q 001060 422 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHT--------------------ETSPGLLE---AIIKHANMERRLGNLED 478 (1169)
Q Consensus 422 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~--------------------~~~P~~~~---~~~~~a~~e~r~g~~e~ 478 (1169)
|-...-.++.+.+...+|+.+.|..+.++++- =+.|.+-. +.++++..+.+.|-+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 44567788889999999999888887776410 11233332 35677778888999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----hhhcCCCHHHHHHHHHhHhhCCChhH
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS-----LDHVQLSKPLLEALIHFESIQSSPKQ 553 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kA-----l~~~p~s~~l~~~~a~~E~~~~~~~~ 553 (1169)
|....+-.+.+.|.++ |.....+++++.....+|.=-+.+++.. |...|+ ..+=.++++|-....++..
T Consensus 361 A~E~cKlllsLdp~eD-----Pl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~ 434 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSED-----PLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDD 434 (665)
T ss_pred HHHHHHHHhhcCCcCC-----chhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhh
Confidence 9999999999987532 3333344444444355566555555554 223343 2333467777776655433
Q ss_pred HHHHHHHHHHHhhcCC
Q 001060 554 IDFLEQLVDKFLMSNS 569 (1169)
Q Consensus 554 ~~~~r~l~eral~~~~ 569 (1169)
...++.++.+|+...|
T Consensus 435 rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 435 RQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 4556677777776655
No 460
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=84.88 E-value=1.1 Score=47.23 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=38.2
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh
Q 001060 400 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL 459 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~ 459 (1169)
+.+.++.+.|.++|.+|+.+. |....-|+.++.+.++.|+++.|.+.|++. ++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~-L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEV-LELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHH-HcCCccc
Confidence 344566666667777777655 666666777777777777777777777765 5666654
No 461
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.74 E-value=1.3e+02 Score=38.54 Aligned_cols=202 Identities=13% Similarity=0.089 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----ccCCHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA----CANYPEYWIR 395 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~----~~~~~e~W~~ 395 (1169)
+..+-...++.+.+...-+.++.. .++. ..-...-..........-.|++++|+.+..++.+. +..+.++|..
T Consensus 464 ~a~val~~~~~e~a~~lar~al~~-L~~~--~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~ 540 (894)
T COG2909 464 RAQVALNRGDPEEAEDLARLALVQ-LPEA--AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSL 540 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-cccc--cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 333334445666777666666652 0000 00111122222233334569999999998888877 5566788888
Q ss_pred H--HHHHHHcCC--hHHHHHHHHHHHHHhhccChH---HHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCCChHHH--
Q 001060 396 Y--VLCMEASGS--MDLAHNALARATHVFVKRLPE---IHLFAARFKEQ----NGDIDGARAAYQLVHTETSPGLLEA-- 462 (1169)
Q Consensus 396 ~--a~~l~~~g~--~e~A~~vl~rAl~~~~p~~~~---l~~~~a~~~e~----~g~~~~A~~~~~~a~~~~~P~~~~~-- 462 (1169)
+ +.+++.+|+ +.+....|.+.-..+.+..+. +....+.++.. .+...+++.-++-. ....|.....
T Consensus 541 ~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~-~~~~~~~~~~~~ 619 (894)
T COG2909 541 LQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVG-SVYTPQPLLSRL 619 (894)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhh-hhcccchhHHHH
Confidence 7 456777883 233334444443333332222 22222222222 23334444444433 2223333333
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH-HHHHhCCHHHHHHHHHH
Q 001060 463 -IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF-LHLVSRNAEKARQILVD 526 (1169)
Q Consensus 463 -~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~-~~~~~g~~e~Ar~i~~k 526 (1169)
.+.++.++...|++++|...+.+......... ...+.........+ ++...|+...|.....+
T Consensus 620 ~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 620 ALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 34678889999999999999988877654321 11111122222222 23457899998888877
No 462
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.07 E-value=2.6e+02 Score=41.51 Aligned_cols=198 Identities=16% Similarity=0.171 Sum_probs=110.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhcc--ChHHHHHH----HHHHHHcCCHHHHHHHHHHHhhhcCCC--hHHHHHH
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFA----ARFKEQNGDIDGARAAYQLVHTETSPG--LLEAIIK 465 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~--~~~l~~~~----a~~~e~~g~~~~A~~~~~~a~~~~~P~--~~~~~~~ 465 (1169)
.++|.+..++|-.+.+...+.+...+ |+ -.++...+ -..+...+.+..++++.+..-+.-.++ ..+.+..
T Consensus 2740 n~fakvArkh~l~~vcl~~L~~iytl--p~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~l 2817 (3550)
T KOG0889|consen 2740 NRFAKVARKHGLPDVCLNQLAKIYTL--PNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTL 2817 (3550)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHh
Confidence 35556666677777777777666543 21 11111111 111111234445555555432221222 2345777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---C-CHH---HHHHHHHHHhhhcCC--CHH
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS---R-NAE---KARQILVDSLDHVQL--SKP 536 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~---g-~~e---~Ar~i~~kAl~~~p~--s~~ 536 (1169)
.+.|..++|+.++|...|..|+++.. ..+..|..|+.++.... . ++. .|...|-+|....-. +..
T Consensus 2818 kG~f~~kL~~~eeAn~~fs~AvQi~~------~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk 2891 (3550)
T KOG0889|consen 2818 KGMFLEKLGKFEEANKAFSAAVQIDD------GLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARK 2891 (3550)
T ss_pred hhHHHHHhcCcchhHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHH
Confidence 88999999999999999999999984 23778999988876642 1 233 445545555554322 234
Q ss_pred HHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHH---HhhCCHHHHHHHHHHHHhhhCC
Q 001060 537 LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL---GLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 537 l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe---~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
++-...++..-.... .-+-+.|++.+..-|- -.|--|+--+ ..+++-..+.-+..++.+.+|-
T Consensus 2892 ~iakvLwLls~dda~---~~l~~~~~k~l~~ip~-----------~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yPQ 2957 (3550)
T KOG0889|consen 2892 LIAKVLWLLSFDDSL---GTLGDVFDKFLGEIPV-----------WNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYPQ 2957 (3550)
T ss_pred HHHHHHHHHHhcccc---chHHHHHHHhhccCCc-----------hhhhhhhHHHHhhccccchhHHHHHHHHHHHhchH
Confidence 444444443332221 1245667777665431 1344444332 2356778888888888888764
No 463
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.66 E-value=4.4 Score=45.21 Aligned_cols=94 Identities=14% Similarity=0.023 Sum_probs=68.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
-+..+.+..++..|+..|.++|....++ +..+|...|....-.|++-.|+.=+.++ +.++|.+...+++-+.+...
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a-l~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA-LKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhhhhhhHHHHH
Confidence 3444555566777777777777654332 3345666666666778888888888887 78899999999999988888
Q ss_pred cCCHHHHHHHHHHHHHhh
Q 001060 473 LGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 473 ~g~~e~A~~iy~~Al~~~ 490 (1169)
+..++.|....+..+...
T Consensus 166 Le~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHhhhhhhh
Confidence 888888887777766554
No 464
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=83.50 E-value=3.1 Score=49.33 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=58.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHh-cCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee---eceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL---AGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~-~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i---~g~~l~ 1106 (1169)
.++.|||.||---.|.-+|+.++. .+|.|... +| |+ -|..|||.|.+.++|.+.+.+ +|+.. |++.|.
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--Wm-Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WM-DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH--HH-HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 468899999998899999999998 67777763 44 32 456899999999999988877 67654 567788
Q ss_pred EEecc
Q 001060 1107 IEERR 1111 (1169)
Q Consensus 1107 V~~~r 1111 (1169)
|++.+
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 88765
No 465
>PRK10941 hypothetical protein; Provisional
Probab=83.43 E-value=8.1 Score=42.99 Aligned_cols=70 Identities=11% Similarity=0.009 Sum_probs=48.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 365 FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 365 ~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
.+.+.+++++|+..-+++|...|.++.-|...|.++.+.|-+..|+.-|+.-++.+ |+.+.+-+....+.
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-P~dp~a~~ik~ql~ 259 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-PEDPISEMIRAQIH 259 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCchhHHHHHHHHH
Confidence 33566777777777777777777777777777777777777777777777777766 66666555554444
No 466
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.51 E-value=8.3 Score=42.88 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 001060 137 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAY 199 (1169)
Q Consensus 137 ~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~ 199 (1169)
...++++.+...+.++.+++.+++.+..+|.+..+|...+..+. ..|+...|+..|++.-+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence 34566777777889999999999999999999999999999999 899999999999987663
No 467
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.18 E-value=8.7 Score=44.95 Aligned_cols=119 Identities=12% Similarity=-0.068 Sum_probs=86.1
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-AN--------YPEYWIRYVLCMEASGSMDLAHNALARATHVFV 421 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-~~--------~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~ 421 (1169)
+.............++--.|++.+|++++.+.=+.+ +- .--+|..++.++.+.+.+..+..+|.+|++...
T Consensus 235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 333444445555667777899999998877643332 11 223788999988888999999999999986221
Q ss_pred -----------------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 422 -----------------KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 422 -----------------p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
.+..+|.+..+..+...|+.-.|.++|.++ +...-.++.+|++++...
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a-v~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA-VHVFHRNPRLWLRLAECC 379 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH-HHHHhcCcHHHHHHHHHH
Confidence 135577888888888889999999999988 666777788899888754
No 468
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=82.15 E-value=0.33 Score=59.83 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=55.3
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1101 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~ 1101 (1169)
...++||+|||+..+++.+|+..|..+|.|.+|+|..... +..-.||||.|.+...+-.|... .+..|+
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~--~~esa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI--KTESAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC--CcccchhhhhhhccccCcccchhhcCCccc
Confidence 3568999999999999999999999999999988654433 34456999999999888887754 444444
No 469
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=81.85 E-value=2 Score=50.37 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=3.8
Q ss_pred eEEEEcc
Q 001060 827 GYFVLND 833 (1169)
Q Consensus 827 ~y~v~nD 833 (1169)
||++.||
T Consensus 98 G~lt~~~ 104 (419)
T KOG0116|consen 98 GYLTNKD 104 (419)
T ss_pred EEEEeCC
Confidence 5555555
No 470
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=81.65 E-value=5.2 Score=38.95 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=51.2
Q ss_pred CCCceEEEEecCCCCCCH-HHHH---HHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEE
Q 001060 1030 EGEVKSVYVRNLPSTVTA-FEIE---EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQV 1105 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~-~~L~---~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l 1105 (1169)
|.+-.+|.|+-|..++.. +||+ ..++.||+|.+|+. . ++--|.|.|.|..+|=+|+.+-+....|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~--c------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL--C------GRQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee--c------CCceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 456678889877666533 4454 44578999999653 2 2347999999999999999885455566666
Q ss_pred EEEe
Q 001060 1106 YIEE 1109 (1169)
Q Consensus 1106 ~V~~ 1109 (1169)
.+.+
T Consensus 155 qCsW 158 (166)
T PF15023_consen 155 QCSW 158 (166)
T ss_pred Eeec
Confidence 6654
No 471
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=81.43 E-value=10 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=10.9
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCe
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRI 1060 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i 1060 (1169)
..|+.-++|.+ +..+....|..
T Consensus 315 ~~VI~~~~P~~-----~~~yvqR~GRa 336 (456)
T PRK10590 315 PHVVNYELPNV-----PEDYVHRIGRT 336 (456)
T ss_pred CEEEEeCCCCC-----HHHhhhhcccc
Confidence 45555556543 23444555654
No 472
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.11 E-value=1e+02 Score=34.63 Aligned_cols=128 Identities=15% Similarity=0.049 Sum_probs=64.8
Q ss_pred HHcCCHHHHHHHHHHHhh---hcCCCh----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh----hCCCccCchHHHH
Q 001060 436 EQNGDIDGARAAYQLVHT---ETSPGL----LEAIIKHANMERRLG-NLEDAFSLYEQAIAIE----KGKEHSQTLPMLY 503 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~---~~~P~~----~~~~~~~a~~e~r~g-~~e~A~~iy~~Al~~~----~~~~~~~~~~~l~ 503 (1169)
++.|+++.|..+|.|+-. .+.|+. ..+++..+.-....+ +++.|...+++|+++. ......+...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 344555555555555411 123332 224555555556666 7888888888887763 2111122222333
Q ss_pred ----HHHHHHHHHHhC---CHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 504 ----AQYSRFLHLVSR---NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 504 ----~~~a~~~~~~~g---~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
..++..+.. .+ ..++|.++++.+-...|+...++.-.+.+-...++ .+.+...+.+++..
T Consensus 84 ~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~---~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFD---EEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCC---hhHHHHHHHHHHHh
Confidence 233333322 22 35667777777766778766666333333333332 34455566666654
No 473
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.05 E-value=3.3e+02 Score=40.57 Aligned_cols=139 Identities=9% Similarity=-0.015 Sum_probs=83.1
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-h---HHHHHHHHHHHHHhhccC
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS----GS-M---DLAHNALARATHVFVKRL 424 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~----g~-~---e~A~~vl~rAl~~~~p~~ 424 (1169)
....+....-+.|.++.|+.+.|-+.|-.|+..+-.....|..++.|+... .. . ..|..+|-+|+.......
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~sk 2888 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSK 2888 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchh
Confidence 344556666688889999999999999999999999999999999988763 11 2 345666767766542223
Q ss_pred hHHHHHHHHHHHHcCCHH-HHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 425 PEIHLFAARFKEQNGDID-GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~-~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
..=++....++....+-. ..-+++++-+.++.+-+.-.|+-......+.++-+-++.++.+.-+..|
T Consensus 2889 aRk~iakvLwLls~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yP 2956 (3550)
T KOG0889|consen 2889 ARKLIAKVLWLLSFDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYP 2956 (3550)
T ss_pred hHHHHHHHHHHHHhccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHHHHHhch
Confidence 333333333332222111 1224444443444443333344433444455666667777666665553
No 474
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=80.96 E-value=22 Score=46.43 Aligned_cols=141 Identities=16% Similarity=0.230 Sum_probs=85.9
Q ss_pred HHhCCCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc-----
Q 001060 92 VKANSSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV----- 165 (1169)
Q Consensus 92 l~~nP~d~~aw~~L~~~~~~~~-~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~----- 165 (1169)
...+|.-...|..|+..++... .+.+.+-++..+.++.-+|.... +....+.+++||+...
T Consensus 8 ~~~~~~~~n~eq~li~el~~~~~~DPl~~w~ryi~wv~~~~~~~~~-------------~~~~l~~~lerc~~~~~~lk~ 74 (974)
T KOG1166|consen 8 EQQNPTPLNYEQRLIYELESYAGNDPLDKWLRYIEWVLEVYPEGKE-------------NQSLLRNLLERCLEELEDLKR 74 (974)
T ss_pred hhccCcHHHHHHHHHHHHHhhcCCCchhhhHhHhhhhhhccccCCc-------------hhhhHHHHHHHHHHhccchhh
Confidence 4566666777777777766211 13334444444444444444322 1445566666666544
Q ss_pred -CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhH
Q 001060 166 -TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQL 241 (1169)
Q Consensus 166 -P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~---p~~~~ 241 (1169)
..+..+...|+.+. ......+++.+|..+.. .|.-.....++..|..+++..+.+.+|..+|+.+++. |...+
T Consensus 75 Y~nD~Rfl~~~~~~~--~~e~~~d~~d~f~~m~~-kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL 151 (974)
T KOG1166|consen 75 YRNDPRFLILWCSLE--LREELQDAEDFFSYLEN-KGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERL 151 (974)
T ss_pred ccccHHHHHHHHhHH--HHHHHhhHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 33455444444321 22346677778877765 3333335688999999999999999999999999987 66655
Q ss_pred HHHHHHH
Q 001060 242 DRYFSSF 248 (1169)
Q Consensus 242 ~~~~~~~ 248 (1169)
.+.+..|
T Consensus 152 ~~~~~~F 158 (974)
T KOG1166|consen 152 LRQYSNF 158 (974)
T ss_pred HHHHHHH
Confidence 5555544
No 475
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=80.43 E-value=7 Score=36.01 Aligned_cols=100 Identities=13% Similarity=0.047 Sum_probs=59.8
Q ss_pred HHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCC--CcceeEeeeeccccCCCceEEEEEE
Q 001060 726 YFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN--FTAIEIKTINSLGSWNGGVLVMVSG 802 (1169)
Q Consensus 726 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~--~~~~~i~~~d~q~~~~~~ilv~v~G 802 (1169)
+.+++|...++ .+++.|.++|.++..+++.+|... +.+++.+.+..-. ....++..+..+.. ++..++....
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g~~~----~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~~~~ 77 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGGTIL----GKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVRGRW 77 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTSEEE----EHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCCCEe----CHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEEEEE
Confidence 46788888776 569999999999877775444332 3444455555422 22344555555555 4445555555
Q ss_pred EEEecCcc--ccceeEEEEEEEeeCCeEEE
Q 001060 803 SVKTKEFC--RRRKFVQTFFLAPQEKGYFV 830 (1169)
Q Consensus 803 ~~~~~~~~--~~~~F~q~F~L~~~~~~y~v 830 (1169)
.++..... ....+.-+.++..++++|-|
T Consensus 78 ~~~~~~~g~~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 78 TFTWRGDGEPVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEecCCceEEEEEEEEEEEEEeCCEEEC
Confidence 55554322 12445666666667888865
No 476
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.37 E-value=1.4e+02 Score=36.00 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh-CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 463 IIKHANMERRLGNLEDAFSLYEQAIAIEK-GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 463 ~~~~a~~e~r~g~~e~A~~iy~~Al~~~~-~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
++..+.+.+++|+-..|..+|..+++... .+......|..+..+|-+++...|.+++++..+.+|.+...+
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 55667788899999999999998885432 222344557777888888888455599999999999876643
No 477
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.20 E-value=26 Score=40.67 Aligned_cols=98 Identities=16% Similarity=0.267 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHh-h---------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--C
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEK-L---------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG--S 150 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~-~---------~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~--~ 150 (1169)
-.++.-.+.++.||.-+..|..=-..++. + .+.-++.-.++...+|..+|+++.+|....-+..++. +
T Consensus 47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~ 126 (421)
T KOG0529|consen 47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD 126 (421)
T ss_pred HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence 34555667889999999888721111111 0 0123455677788899999999999999888888776 3
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Q 001060 151 MDKVVEVYERAVQGVTYSVDIWLHYCIFAIN 181 (1169)
Q Consensus 151 ~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~ 181 (1169)
+.+=..+++++|+..|.|...| +|=+|+.+
T Consensus 127 ~~~EL~lcek~L~~D~RNfh~W-~YRRfV~~ 156 (421)
T KOG0529|consen 127 WNTELQLCEKALKQDPRNFHAW-HYRRFVVE 156 (421)
T ss_pred HHHHHHHHHHHHhcCcccccch-HHHHHHHH
Confidence 6788889999999999999999 56677764
No 478
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.95 E-value=86 Score=39.03 Aligned_cols=146 Identities=21% Similarity=0.168 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHh----hccChHHHHHHHHHHHHcC----
Q 001060 373 NKVVKLYERCLIACANYPEYWIRYVLCMEA-----SGSMDLAHNALARATHVF----VKRLPEIHLFAARFKEQNG---- 439 (1169)
Q Consensus 373 ~~a~~lyeraL~~~~~~~e~W~~~a~~l~~-----~g~~e~A~~vl~rAl~~~----~p~~~~l~~~~a~~~e~~g---- 439 (1169)
..+..+|+.+-.. .+...-..++.++.. ..+++.|...|.++...+ ....+.....++.++.+..
T Consensus 229 ~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 229 SEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 4455555554433 233333444444332 247888999988887621 1223445566777776643
Q ss_pred -CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---
Q 001060 440 -DIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL--- 512 (1169)
Q Consensus 440 -~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~--- 512 (1169)
+.+.|+.+|.++ .++ ++....+.++.++... .++.+|..+|..|..... ......++.++..
T Consensus 307 ~d~~~A~~~~~~a-A~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--------~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 307 IDYEKALKLYTKA-AEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--------ILAIYRLALCYELGLG 375 (552)
T ss_pred ccHHHHHHHHHHH-Hhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhCCC
Confidence 678899999998 333 3344455555554433 357899999999987652 3344555555433
Q ss_pred HhCCHHHHHHHHHHHhhhc
Q 001060 513 VSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~~~ 531 (1169)
...+.+.|+.+|+++.+..
T Consensus 376 v~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc
Confidence 1237899999999999887
No 479
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.79 E-value=15 Score=39.57 Aligned_cols=109 Identities=16% Similarity=0.238 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHHHhcc----C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHH
Q 001060 370 GDFNKVVKLYERCLIACA----N---YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 442 (1169)
Q Consensus 370 gd~~~a~~lyeraL~~~~----~---~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~ 442 (1169)
-+++.|+..|.-||.+.- . -..+|+++|-++...++.+.....+++|+..+
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y---------------------- 148 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFY---------------------- 148 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH----------------------
Confidence 356677777777776532 1 13588888888877787666666666666543
Q ss_pred HHHHHHHHHhh-hcCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH
Q 001060 443 GARAAYQLVHT-ETSP----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 511 (1169)
Q Consensus 443 ~A~~~~~~a~~-~~~P----~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~ 511 (1169)
++++. +..| +...+.+..+.+.+|.|++++|...|.+.+....... +......|+=+|
T Consensus 149 ------~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~-----~~~l~~~AR~~w 211 (214)
T PF09986_consen 149 ------EEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK-----EPKLKDMARDQW 211 (214)
T ss_pred ------HHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC-----cHHHHHHHHHHH
Confidence 22211 1111 2244666778888888888888888888887654321 334445555444
No 480
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=79.43 E-value=7 Score=34.67 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=38.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~ 1095 (1169)
+-.||. .|......||.++|+.||.|. |.-.+. .-|||...+.+.+..++..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~---VsWi~d------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY---VSWIND------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE---EEEECT------TEEEEEECCCHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE---EEEEcC------CcEEEEeecHHHHHHHHHH
Confidence 344555 999999999999999999985 433344 3799999999999988876
No 481
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.08 E-value=7.4 Score=43.27 Aligned_cols=50 Identities=6% Similarity=0.050 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001060 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG 164 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~ 164 (1169)
++++.+...+++++..+|.+...|..+...+++.|+...|+..|+++-..
T Consensus 167 ~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 167 GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999887553
No 482
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.89 E-value=10 Score=45.34 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=60.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 477 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e 477 (1169)
.|....|+...|..++.+|+-..+-...--...+|.++...|-...|-.++.++ +.++-..+-.++..++++.-+.+++
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~-l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA-LAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH-HhhcccCchHHHhcchhHHHHhhhH
Confidence 333446777777777777775543223333455666777777666777777766 4555555556666777777777777
Q ss_pred HHHHHHHHHHHhhhC
Q 001060 478 DAFSLYEQAIAIEKG 492 (1169)
Q Consensus 478 ~A~~iy~~Al~~~~~ 492 (1169)
.|++.|+.|+...++
T Consensus 694 ~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 694 GALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHHhcCCC
Confidence 777777777777654
No 483
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.82 E-value=1.5e+02 Score=36.90 Aligned_cols=215 Identities=19% Similarity=0.216 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-- 403 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~---gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~-- 403 (1169)
+++.|...|.++.. ++ +.+.-..++.+++.. .|+.+|..+|.+|... .+.+..++++.++..-
T Consensus 308 d~~~A~~~~~~aA~--------~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 308 DYEKALKLYTKAAE--------LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLG 375 (552)
T ss_pred cHHHHHHHHHHHHh--------cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCC
Confidence 45666777777755 22 234445555554433 3677999999998755 4567777777776531
Q ss_pred --CChHHHHHHHHHHHHHhhccChHHHHHHHHHHH-HcCCHHHHHHHHHHHhhhcCCChHH---HHHHHHH---HHHH--
Q 001060 404 --GSMDLAHNALARATHVFVKRLPEIHLFAARFKE-QNGDIDGARAAYQLVHTETSPGLLE---AIIKHAN---MERR-- 472 (1169)
Q Consensus 404 --g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e-~~g~~~~A~~~~~~a~~~~~P~~~~---~~~~~a~---~e~r-- 472 (1169)
-+...|...|.++.+.. .+.....++.+++ ..+.++.+...+... .++.-.... .++.... +..+
T Consensus 376 v~r~~~~A~~~~k~aA~~g---~~~A~~~~~~~~~~g~~~~~~~~~~~~~~-a~~g~~~~q~~a~~l~~~~~~~~~~~~~ 451 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG---NPSAAYLLGAFYEYGVGRYDTALALYLYL-AELGYEVAQSNAAYLLDQSEEDLFSRGV 451 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc---ChhhHHHHHHHHHHccccccHHHHHHHHH-HHhhhhHHhhHHHHHHHhcccccccccc
Confidence 26788999999998754 4443333333333 236666655554432 222111111 1111111 0001
Q ss_pred cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC
Q 001060 473 LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549 (1169)
Q Consensus 473 ~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~ 549 (1169)
..+.+.+...+.++..... +.....++++.+.- ..+++.|...|.+|.... ...+|.-=-+.|.+.|
T Consensus 452 ~~~~~~~~~~~~~a~~~g~--------~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g 521 (552)
T KOG1550|consen 452 ISTLERAFSLYSRAAAQGN--------ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEG 521 (552)
T ss_pred ccchhHHHHHHHHHHhccC--------HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcC
Confidence 1245667777777665542 33445555554432 347899999999999888 6667765556777788
Q ss_pred ChhHHHHHHHHHHHHhhcCCC
Q 001060 550 SPKQIDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 550 ~~~~~~~~r~l~eral~~~~~ 570 (1169)
... +..+..+|+++...+.+
T Consensus 522 ~~~-~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEEDSR 541 (552)
T ss_pred cch-hHHHHHHHHHHHhcCch
Confidence 776 78888889988775543
No 484
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.51 E-value=1e+02 Score=34.21 Aligned_cols=101 Identities=15% Similarity=0.225 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhc--CCCCCC-HH
Q 001060 135 YGYWKKYADHEARVGSMDKVVEVYERAVQGV---TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV--GTDYLS-FP 208 (1169)
Q Consensus 135 ~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~---P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~--g~d~~s-~~ 208 (1169)
.++|++.++.+.+.++.+.+.+.+.+.+... ...+|+.++.+++-. ..++..-+.+.+|.+=..+ |-|... ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~-~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGL-IYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHH-hhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 5899999999999999888888777766543 356788888888777 6666544444444332211 233211 12
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 209 LWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 209 lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
.-..+.-|..+..+++.|..++..+|..
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 2223334444555666666666666543
No 485
>PRK10941 hypothetical protein; Provisional
Probab=78.33 E-value=19 Score=40.15 Aligned_cols=69 Identities=14% Similarity=-0.041 Sum_probs=59.0
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 469 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 469 (1169)
.+.+.++++.|..+.++.+.+. |+++.-|-..|.++.+.|.+..|+.-|+.- ++..|+.+.+-+-...+
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~f-l~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYF-VEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHhCCCchhHHHHHHHH
Confidence 4567899999999999999987 899999999999999999999999999985 78899988765444443
No 486
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=77.87 E-value=22 Score=33.88 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=64.9
Q ss_pred HHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcC-----CCcce--eEeeeeccccCCCceE
Q 001060 726 YFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISL-----NFTAI--EIKTINSLGSWNGGVL 797 (1169)
Q Consensus 726 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l-----~~~~~--~i~~~d~q~~~~~~il 797 (1169)
+-|+.|+.-|. .+++.|.+.++++..+....+.. .....+.+..+.+.+. ....+ +|.++|... +--+
T Consensus 8 ~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g---~~A~ 83 (116)
T PF12893_consen 8 ATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGK-LRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG---DVAS 83 (116)
T ss_dssp HHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTE-EEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET---TEEE
T ss_pred HHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCc-eEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC---CEEE
Confidence 45788998886 78999999999988776655322 2233344444455542 12233 577777654 2233
Q ss_pred EEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEE
Q 001060 798 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFH 836 (1169)
Q Consensus 798 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr 836 (1169)
|.|.-.+. + +.|+-.|.|...+++|-|.|=+|.
T Consensus 84 a~v~~~~~--~----~~~~d~~~L~K~dg~WkIv~k~~~ 116 (116)
T PF12893_consen 84 AKVEYEFP--G----FWFVDYFTLVKTDGGWKIVSKVYH 116 (116)
T ss_dssp EEEEEEEE--T----EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEC--C----CceEEEEEEEEECCEEEEEEEecC
Confidence 44443333 2 479999999999999999998773
No 487
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.31 E-value=73 Score=32.39 Aligned_cols=110 Identities=23% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
+..+..-...++.+++..++....-+- |+.+++-+.-+.+....|++.+|+.+|+.+ .+..|..+..--.++.++.-+
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l-~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLREL-EERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHH-hccCCCChHHHHHHHHHHHHc
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 474 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
++. .|-.|+.-... .+--..++.+.+..+...
T Consensus 92 ~D~-------------------------~Wr~~A~evle-~~~d~~a~~Lv~~Ll~~~ 123 (160)
T PF09613_consen 92 GDP-------------------------SWRRYADEVLE-SGADPDARALVRALLARA 123 (160)
T ss_pred CCh-------------------------HHHHHHHHHHh-cCCChHHHHHHHHHHHhc
No 488
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.22 E-value=8.4 Score=42.15 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=48.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceE
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQ 1104 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~ 1104 (1169)
.-|-|-++|+.- ...|-.+|++||.|.+. +.. +.-.+-+|.|.+.-.+++||..+|..|+|-.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkh---v~~----~ngNwMhirYssr~~A~KALskng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKH---VTP----SNGNWMHIRYSSRTHAQKALSKNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeee---ecC----CCCceEEEEecchhHHHHhhhhcCeeeccce
Confidence 456666887654 45577999999999762 222 2335999999999999999999999999875
No 489
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.40 E-value=4.1 Score=27.43 Aligned_cols=31 Identities=6% Similarity=-0.082 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 502 LYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
.|..++..++. .++++.|...|+++++..|.
T Consensus 3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLK-LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence 56677777776 89999999999999988775
No 490
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.06 E-value=66 Score=35.16 Aligned_cols=53 Identities=34% Similarity=0.431 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchH---HHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001060 476 LEDAFSLYEQAIAIEKGKEHSQTLP---MLYAQYSRFLHLVSRNAEKARQILVDSLD 529 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~~~~~~~~~---~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~ 529 (1169)
.++|...|++|++..... -+++.| .+.++|+-|++...|+.++|+++-++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~-L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKE-LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcc-cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 478999999999876432 234444 35688999999999999999999888864
No 491
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=74.51 E-value=14 Score=31.43 Aligned_cols=56 Identities=13% Similarity=0.319 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1043 STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1043 ~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..++-++++..+.+|+-.. | +...| || ||.|.+..+|+++... ++..+.+..+.++
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~---I--~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDR---I--RDDRT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CCccHHHHHHHHhcCCcce---E--EecCC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 3578899999999998753 3 33444 44 9999999999999988 7888888777653
No 492
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=74.31 E-value=1.8e+02 Score=33.99 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001060 374 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 415 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~r 415 (1169)
+|+.+.|.++...|++.++-+.++.++...|-...|...|..
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 566667777777777777777777777667766666666644
No 493
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=74.24 E-value=2 Score=49.57 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=56.6
Q ss_pred CceEEEEecCCCCC-CHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTV-TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~-t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
+.+.+-+.-+|+.. +-.+|..+|.+||.|..|. ++.. .--|.|+|.+..++-.|-...+..|++|.|+|.+-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~q--v~~~-----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQ--VDYS-----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCcccccc--ccCc-----hhhheeeeeccccccchhccccceecCceeEEEEe
Confidence 34445455555544 5689999999999999854 4433 12689999999999888777899999999999886
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
.+
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 65
No 494
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.20 E-value=25 Score=32.27 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
..++.++.+....|+.++|...+++|+.+....
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346678888889999999999999999987643
No 495
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=73.73 E-value=1.2 Score=49.64 Aligned_cols=79 Identities=19% Similarity=0.345 Sum_probs=55.7
Q ss_pred eEEEEecCCCCCCHHHH---HHHHhcCCCeeeeeEEeecC--CCcc-cccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1034 KSVYVRNLPSTVTAFEI---EEEFQNFGRIKPDGVFVRNR--KDVV-GVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L---~~~F~~~G~i~~~~i~~~~~--~~g~-~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
.-+||-+|+.....+.+ ...|.+||.|.+|.+ -++. ..+. +.+-++|+|+..+++..||.. .|+.++|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~-~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVK-NKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEee-cCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 56788888877655544 457889999998643 2222 1111 223479999999999999988 89999999877
Q ss_pred EEeccCC
Q 001060 1107 IEERRPN 1113 (1169)
Q Consensus 1107 V~~~r~~ 1113 (1169)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7665543
No 496
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=73.60 E-value=3.1e+02 Score=36.41 Aligned_cols=292 Identities=13% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCH
Q 001060 184 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 263 (1169)
Q Consensus 184 ~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (1169)
+..+..-.....++.....|.....|...|.+ ..-..++.+...-.+.-..+......---.+..|
T Consensus 771 ~kv~~vc~~vr~~l~~~~~~~~~~~ilTs~vk--~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~------------ 836 (1265)
T KOG1920|consen 771 NKVNSVCDAVRNALERRAPDKFNLFILTSYVK--SNPPEIEEALQKIKELQLAQVAVSADEALKHLLF------------ 836 (1265)
T ss_pred hHHHHHHHHHHHHHhhcCcchhhHHHHHHHHh--cCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHh------------
Q ss_pred HHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001060 264 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRR 343 (1169)
Q Consensus 264 eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r 343 (1169)
++..-...-...+-|+-.+..+-.-..+
T Consensus 837 ----------------------------------------------------Lvdvn~lfn~ALgtYDl~Lal~VAq~Sq 864 (1265)
T KOG1920|consen 837 ----------------------------------------------------LVDVNELFNSALGTYDLDLALLVAQKSQ 864 (1265)
T ss_pred ----------------------------------------------------hccHHHHHHhhhcccchHHHHHHHHHhc
Q ss_pred CCcccCCCChhcHHHHHHHHH---HHHHcCChHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001060 344 PYFHVKPLSVTELENWHNYLD---FIERDGDFNKVVKLYERCLIACANYPE-YWIRYVLCMEASGSMDLAHNALARATHV 419 (1169)
Q Consensus 344 ~~~~v~pl~~~~~~~W~~yl~---~~~~~gd~~~a~~lyeraL~~~~~~~e-~W~~~a~~l~~~g~~e~A~~vl~rAl~~ 419 (1169)
.||.+.--+.+-+. -..+.=.++..++-|++||......-+ .|-....|..+++-+.+|+.+|.-..+.
T Consensus 865 -------kDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~ 937 (1265)
T KOG1920|consen 865 -------KDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEK 937 (1265)
T ss_pred -------cChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHH
Q ss_pred hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCch
Q 001060 420 FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL 499 (1169)
Q Consensus 420 ~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~ 499 (1169)
. ..++..||..+.+...+++|.-.|+++ |+.++|...|+.+..-.
T Consensus 938 ~----k~i~~~ya~hL~~~~~~~~Aal~Ye~~----------------------GklekAl~a~~~~~dWr--------- 982 (1265)
T KOG1920|consen 938 Q----KVIYEAYADHLREELMSDEAALMYERC----------------------GKLEKALKAYKECGDWR--------- 982 (1265)
T ss_pred H----HHHHHHHHHHHHHhccccHHHHHHHHh----------------------ccHHHHHHHHHHhccHH---------
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHH
Q 001060 500 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAE 579 (1169)
Q Consensus 500 ~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~ 579 (1169)
..+.+..+..-..++-...-+......-....-+++.-.++..+.+ .+.+-.++-++-.
T Consensus 983 -----~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~~av~ll~ka~~------------- 1041 (1265)
T KOG1920|consen 983 -----EALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PEEAVALLCKAKE------------- 1041 (1265)
T ss_pred -----HHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HHHHHHHHhhHhH-------------
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001060 580 REELSCVFLEFLGLFGDAQLIKKAEDRHA 608 (1169)
Q Consensus 580 ~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~ 608 (1169)
|..-+.-..+.++.+.+..+.+...
T Consensus 1042 ----~~eAlrva~~~~~~d~iee~l~~al 1066 (1265)
T KOG1920|consen 1042 ----WEEALRVASKAKRDDIIEEVLKPAL 1066 (1265)
T ss_pred ----HHHHHHHHHhcccchHHHHHHhHHH
No 497
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=73.19 E-value=14 Score=37.55 Aligned_cols=124 Identities=22% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHhcCCCeeeeeEEeecCC--CcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEeccCCCCCCCCC
Q 001060 1043 STVTAFEIEEEFQNFGRIKPDGVFVRNRK--DVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPNTGSTSRG 1120 (1169)
Q Consensus 1043 ~~~t~~~L~~~F~~~G~i~~~~i~~~~~~--~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r~~~~~~~rg 1120 (1169)
+..+.++|-++=+-||+|.++.+.|+... .-.+.--+=--|-+++-..---.-.+.....+...-.......+....+
T Consensus 84 ylenk~qIGKVDEIfG~i~d~~fsIK~~dgv~assfk~g~k~fi~p~KllPl~RFLP~p~~~kk~~~~~~~~~~~gg~gg 163 (215)
T KOG3262|consen 84 YLENKEQIGKVDEIFGPINDVHFSIKPSDGVQASSFKPGDKLFIDPDKLLPLDRFLPQPVGPKKPKGADRIKPGPGGRGG 163 (215)
T ss_pred eecchhhhcchhhhcccccccEEEEecCCCceeecccCCCeEEecccccCcHhhcCCCCCCCCCcccccccCCCCCCCCc
Q ss_pred CCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q 001060 1121 GRRGRGRGSYQ-----TDAPRGRFGGRGLGRGSAQ-DGGDYNRSRGNGFYQR 1166 (1169)
Q Consensus 1121 ~~~g~grg~~~-----~~~~~g~~ggrg~grg~~~-~~g~~~r~~g~g~~~~ 1166 (1169)
++++|+++... +.+++|.+.+++.+|+++. +++.++..+|++...+
T Consensus 164 ~rGgRg~~rGg~~grGrgg~~Gg~rgggg~rGG~~~Rgg~ggg~rgrgR~~r 215 (215)
T KOG3262|consen 164 GRGGRGGGRGGFGGRGRGGGGGGFRGGGGSRGGFRGRGGHGGGFRGRGRGPR 215 (215)
T ss_pred CcCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCCCCCCCCC
No 498
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=73.17 E-value=1e+02 Score=34.77 Aligned_cols=133 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc---CCCHHHHHHHHH
Q 001060 103 TALLEETEKLAQDNIVKIRRVYDAFLAE--FPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV---TYSVDIWLHYCI 177 (1169)
Q Consensus 103 ~~L~~~~~~~~~~~i~~Ar~~ye~~l~~--~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~---P~s~~lw~~y~~ 177 (1169)
..+.....+..+.+|++..+..+++-+- .-.-.+.|+..++.+.+.|+.+.|.+.|.+-.... ....|+.++.++
T Consensus 70 ~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iR 149 (393)
T KOG0687|consen 70 QDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIR 149 (393)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHH
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhc--CCCCC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001060 178 FAINTYGDPETIRRLFERGLAYV--GTDYL-SFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 236 (1169)
Q Consensus 178 ~~~~~~~~~e~Ar~~~erAl~~~--g~d~~-s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~ 236 (1169)
+-+ ..+|.+-+.+..++|=..+ |-|.. ...+-..+.-|-.+..+++.|..+|..++..
T Consensus 150 lgl-fy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 150 LGL-FYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHH-hhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
No 499
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.07 E-value=9.1 Score=45.68 Aligned_cols=109 Identities=16% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
+.|....|+...|..++.+|+-..+-...--...+|.++...|-...|-.++.++ +.++-..+-.++..++++.-+.++
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~-l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA-LAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH-HhhcccCchHHHhcchhHHHHhhh
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 477 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
+.|++.|+.|+...+++ +.+-..+..+-.+
T Consensus 693 ~~a~~~~~~a~~~~~~~------~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKC------PECENSLKLIRCM 722 (886)
T ss_pred HHHHHHHHHHHhcCCCC------hhhHHHHHHHHHh
No 500
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=72.60 E-value=6 Score=36.98 Aligned_cols=50 Identities=30% Similarity=0.397 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001060 1110 RRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRGSAQDGGDYNRSRG 1160 (1169)
Q Consensus 1110 ~r~~~~~~~rg~~~g~grg~~~~~~~~g~~ggrg~grg~~~~~g~~~r~~g 1160 (1169)
...+.+..+|..++|||+|. +.+++.++++++|+++|-..+-.+.++.++
T Consensus 85 ~~~~~r~~~r~~~~grG~gn-g~~~~~~rg~~~g~~~g~~n~~~~~~~~rq 134 (134)
T KOG3293|consen 85 SNNRNRKQSRDRGRGRGRGN-GNRGGNRRGGGRGGSMGQNNSIPGRGSNRQ 134 (134)
T ss_pred HhccchhccccccCCcCCCC-CCCCCCcCCCCCCCCcCCCCCCCcccccCC
Done!