Query 001060
Match_columns 1169
No_of_seqs 848 out of 4227
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 1.1E-50 3.9E-55 503.2 53.2 483 82-644 49-594 (679)
2 2ooe_A Cleavage stimulation fa 100.0 2.5E-48 8.6E-53 477.5 52.9 480 88-646 2-521 (530)
3 2uy1_A Cleavage stimulation fa 100.0 3.8E-38 1.3E-42 381.1 40.3 429 116-654 10-467 (493)
4 4e6h_A MRNA 3'-END-processing 100.0 3.2E-30 1.1E-34 320.0 43.7 437 80-572 81-575 (679)
5 2ooe_A Cleavage stimulation fa 100.0 2.4E-30 8.3E-35 317.4 40.0 415 79-569 26-494 (530)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.8E-29 1.6E-33 292.3 44.0 374 79-548 13-386 (388)
7 3q90_A RAS GTPase-activating p 100.0 9.5E-32 3.2E-36 264.9 11.8 124 718-842 7-139 (140)
8 3ujm_A Rasputin; NTF2-like fol 100.0 1.5E-31 5.2E-36 256.3 11.1 116 719-838 2-120 (120)
9 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-27 4.7E-32 279.9 45.7 369 105-572 5-373 (388)
10 2uy1_A Cleavage stimulation fa 100.0 2.9E-28 1E-32 294.5 31.3 405 80-605 10-447 (493)
11 2xpi_A Anaphase-promoting comp 100.0 1.7E-26 5.7E-31 286.5 43.4 455 92-614 76-583 (597)
12 1gy6_A Nuclear transport facto 100.0 1.5E-28 5E-33 238.2 13.2 118 720-842 7-126 (127)
13 2y4t_A DNAJ homolog subfamily 100.0 1.9E-25 6.4E-30 266.5 43.3 373 81-571 8-414 (450)
14 1zo2_A NTF2, nuclear transport 100.0 1.5E-28 5E-33 238.6 13.1 116 719-839 10-128 (129)
15 3fp2_A TPR repeat-containing p 100.0 3.3E-25 1.1E-29 270.7 45.6 240 318-572 247-496 (537)
16 3nv0_B NTF2-related export pro 100.0 1.8E-28 6.1E-33 243.2 13.3 115 720-839 33-154 (154)
17 1gy7_A Nuclear transport facto 100.0 2E-28 6.9E-33 236.5 12.9 117 720-840 5-124 (125)
18 2xpi_A Anaphase-promoting comp 100.0 3.1E-25 1.1E-29 275.0 44.5 444 133-613 82-548 (597)
19 2ond_A Cleavage stimulation fa 99.9 2E-26 6.8E-31 262.0 28.3 272 351-644 3-297 (308)
20 2gw1_A Mitochondrial precursor 99.9 1.8E-24 6.1E-29 262.1 43.3 431 99-572 6-483 (514)
21 2qiy_A UBP3-associated protein 99.9 1.4E-27 4.7E-32 239.7 12.2 125 717-843 8-152 (154)
22 2gw1_A Mitochondrial precursor 99.9 6.7E-25 2.3E-29 265.9 37.8 405 79-544 20-492 (514)
23 3fp2_A TPR repeat-containing p 99.9 1.2E-24 4.3E-29 265.5 38.9 440 98-614 24-495 (537)
24 1jkg_A P15; NTF2-like domain, 99.9 6.5E-27 2.2E-31 230.8 13.5 116 720-840 13-138 (140)
25 3ieg_A DNAJ homolog subfamily 99.9 3.9E-23 1.3E-27 237.1 43.3 335 98-547 2-352 (359)
26 2y4t_A DNAJ homolog subfamily 99.9 2.2E-22 7.6E-27 239.9 41.8 375 116-613 7-413 (450)
27 3ieg_A DNAJ homolog subfamily 99.9 6.4E-21 2.2E-25 218.6 44.2 324 134-572 2-340 (359)
28 3hym_B Cell division cycle pro 99.9 8.2E-21 2.8E-25 215.4 32.6 300 88-476 11-321 (330)
29 2ond_A Cleavage stimulation fa 99.9 1.1E-20 3.6E-25 214.7 28.0 243 132-493 5-274 (308)
30 3hym_B Cell division cycle pro 99.9 2.5E-20 8.6E-25 211.4 31.1 304 123-518 10-322 (330)
31 4g1t_A Interferon-induced prot 99.9 4.5E-20 1.5E-24 221.6 32.6 386 83-572 33-464 (472)
32 1fch_A Peroxisomal targeting s 99.9 9.2E-21 3.2E-25 219.2 25.3 305 115-491 39-361 (368)
33 4g1t_A Interferon-induced prot 99.9 3.1E-19 1E-23 214.4 36.6 372 135-612 51-461 (472)
34 4eqf_A PEX5-related protein; a 99.9 3.1E-20 1E-24 215.2 24.6 292 122-490 48-357 (365)
35 1fch_A Peroxisomal targeting s 99.9 5.7E-20 2E-24 212.5 26.6 315 118-531 18-360 (368)
36 3cv0_A Peroxisome targeting si 99.8 3.8E-19 1.3E-23 201.4 28.1 285 98-491 20-317 (327)
37 4eqf_A PEX5-related protein; a 99.8 2.8E-19 9.5E-24 207.1 23.3 306 138-531 34-357 (365)
38 2h6f_A Protein farnesyltransfe 99.8 6.4E-19 2.2E-23 205.6 24.7 107 91-200 89-196 (382)
39 2xm6_A Protein corresponding t 99.8 1.7E-16 5.9E-21 192.1 46.1 384 84-543 26-448 (490)
40 3cv0_A Peroxisome targeting si 99.8 2.8E-18 9.5E-23 194.2 27.9 290 135-533 21-318 (327)
41 2h6f_A Protein farnesyltransfe 99.8 3.2E-18 1.1E-22 199.6 24.0 256 126-543 88-361 (382)
42 2xm6_A Protein corresponding t 99.8 7.4E-15 2.5E-19 177.8 52.0 373 120-569 26-434 (490)
43 2pl2_A Hypothetical conserved 99.8 3.9E-17 1.3E-21 175.2 24.1 198 354-564 3-211 (217)
44 3uq3_A Heat shock protein STI1 99.8 2.6E-16 8.9E-21 171.3 30.1 238 98-467 4-254 (258)
45 3u4t_A TPR repeat-containing p 99.8 8.1E-17 2.8E-21 177.6 26.2 187 358-547 76-267 (272)
46 3sf4_A G-protein-signaling mod 99.7 4.8E-16 1.6E-20 181.5 28.8 328 97-516 7-362 (406)
47 2pl2_A Hypothetical conserved 99.7 1.4E-16 4.8E-21 170.8 22.1 194 318-529 9-213 (217)
48 3u4t_A TPR repeat-containing p 99.7 5E-16 1.7E-20 171.2 25.8 141 323-472 117-267 (272)
49 2q7f_A YRRB protein; TPR, prot 99.7 4E-16 1.4E-20 168.6 23.2 213 319-548 28-240 (243)
50 4a1s_A PINS, partner of inscut 99.7 8.5E-16 2.9E-20 180.5 27.0 295 95-534 44-376 (411)
51 3vtx_A MAMA; tetratricopeptide 99.7 1E-15 3.4E-20 158.7 23.3 174 355-537 4-177 (184)
52 3ro2_A PINS homolog, G-protein 99.7 2.7E-15 9.4E-20 169.3 26.9 143 389-533 182-335 (338)
53 3sf4_A G-protein-signaling mod 99.7 3.6E-15 1.2E-19 174.1 28.3 308 79-476 23-363 (406)
54 3uq3_A Heat shock protein STI1 99.7 4.3E-15 1.5E-19 161.7 26.8 223 317-568 8-237 (258)
55 1of5_A MRNA export factor MEX6 99.7 6.1E-17 2.1E-21 169.1 10.8 120 720-840 10-203 (221)
56 1jkg_B TAP; NTF2-like domain, 99.7 7.9E-17 2.7E-21 174.1 12.1 120 721-841 15-171 (250)
57 3mkr_A Coatomer subunit epsilo 99.7 6.4E-15 2.2E-19 165.6 28.2 192 328-539 79-273 (291)
58 2ho1_A Type 4 fimbrial biogene 99.7 1.1E-14 3.7E-19 158.7 29.0 210 351-572 31-243 (252)
59 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.2E-16 4.2E-21 161.9 12.5 83 1032-1115 38-121 (156)
60 3q2s_C Cleavage and polyadenyl 99.7 2.6E-17 9E-22 177.2 8.0 79 1032-1111 67-148 (229)
61 3ro2_A PINS homolog, G-protein 99.7 7.8E-15 2.7E-19 165.5 28.2 302 99-491 5-334 (338)
62 2ho1_A Type 4 fimbrial biogene 99.7 7E-15 2.4E-19 160.2 26.5 207 316-539 39-247 (252)
63 1u6f_A Tcubp1, RNA-binding pro 99.7 7.8E-16 2.7E-20 152.7 16.8 84 1031-1115 40-124 (139)
64 2vq2_A PILW, putative fimbrial 99.7 2.4E-14 8.2E-19 152.2 29.5 209 352-572 4-216 (225)
65 4fxv_A ELAV-like protein 1; RN 99.7 1.8E-16 6.3E-21 147.0 11.2 80 1032-1112 18-98 (99)
66 2q7f_A YRRB protein; TPR, prot 99.7 2.8E-15 9.7E-20 161.8 21.3 205 356-572 23-227 (243)
67 3mkr_A Coatomer subunit epsilo 99.7 9E-15 3.1E-19 164.4 26.0 272 114-482 12-287 (291)
68 2vq2_A PILW, putative fimbrial 99.6 2.7E-14 9.2E-19 151.8 26.9 206 317-539 11-220 (225)
69 1q40_B MEX67, mRNA export fact 99.6 3E-16 1E-20 163.9 11.3 121 720-841 13-210 (219)
70 4abn_A Tetratricopeptide repea 99.6 5.9E-15 2E-19 177.9 21.8 207 328-549 82-306 (474)
71 3vtx_A MAMA; tetratricopeptide 99.6 2.5E-14 8.4E-19 148.2 22.5 165 317-491 8-172 (184)
72 4abn_A Tetratricopeptide repea 99.6 9.9E-15 3.4E-19 175.9 22.0 222 116-484 83-316 (474)
73 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.4E-14 4.9E-19 159.4 21.6 86 114-200 18-107 (275)
74 2dgs_A DAZ-associated protein 99.6 2.5E-15 8.7E-20 139.6 12.8 84 1031-1115 8-91 (99)
75 2lxi_A RNA-binding protein 10; 99.6 6.6E-16 2.3E-20 141.0 8.1 80 1034-1114 2-84 (91)
76 4a1s_A PINS, partner of inscut 99.6 4.2E-14 1.4E-18 166.0 25.5 285 317-614 51-376 (411)
77 3pgw_S U1-70K; protein-RNA com 99.6 4.4E-15 1.5E-19 174.8 15.8 84 1032-1116 101-185 (437)
78 3e4b_A ALGK; tetratricopeptide 99.6 7.1E-14 2.4E-18 167.3 26.7 381 104-566 8-420 (452)
79 4i17_A Hypothetical protein; T 99.6 6.7E-14 2.3E-18 150.5 23.8 180 356-544 7-223 (228)
80 1whw_A Hypothetical protein ri 99.6 5.6E-15 1.9E-19 137.3 12.9 83 1032-1115 7-90 (99)
81 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.3E-13 8E-18 149.7 28.4 227 327-572 18-249 (275)
82 2cqd_A RNA-binding region cont 99.6 1E-14 3.5E-19 139.8 15.1 85 1029-1114 13-97 (116)
83 1x5t_A Splicing factor 3B subu 99.6 4.3E-15 1.5E-19 137.2 11.9 83 1032-1115 4-88 (96)
84 3s8s_A Histone-lysine N-methyl 99.6 3.7E-15 1.3E-19 141.0 11.6 80 1032-1112 5-85 (110)
85 4gyw_A UDP-N-acetylglucosamine 99.6 1.9E-14 6.4E-19 180.8 21.2 174 351-533 4-177 (723)
86 2dnz_A Probable RNA-binding pr 99.6 5.8E-15 2E-19 136.0 12.2 83 1032-1115 4-87 (95)
87 1x4b_A Heterogeneous nuclear r 99.6 4.8E-15 1.6E-19 142.1 11.9 83 1031-1114 25-107 (116)
88 1xi4_A Clathrin heavy chain; a 99.6 3.1E-12 1E-16 162.9 39.5 362 79-550 999-1370(1630)
89 2dng_A Eukaryotic translation 99.6 1.1E-14 3.7E-19 136.4 13.0 82 1031-1114 13-94 (103)
90 3ex7_B RNA-binding protein 8A; 99.6 4.4E-15 1.5E-19 144.6 10.6 84 1031-1115 20-104 (126)
91 2cpz_A CUG triplet repeat RNA- 99.6 1.5E-14 5.2E-19 138.3 14.2 84 1031-1115 23-107 (115)
92 3e4b_A ALGK; tetratricopeptide 99.6 6.7E-13 2.3E-17 158.8 31.8 381 139-610 7-418 (452)
93 2cq0_A Eukaryotic translation 99.6 1.1E-14 3.6E-19 136.5 12.6 85 1030-1115 12-97 (103)
94 2fy1_A RNA-binding motif prote 99.6 1.3E-14 4.4E-19 138.9 13.2 81 1032-1114 6-87 (116)
95 1xi4_A Clathrin heavy chain; a 99.6 7.3E-12 2.5E-16 159.5 41.6 400 97-612 983-1387(1630)
96 1x5u_A Splicing factor 3B subu 99.6 1.2E-14 4.1E-19 136.6 12.6 83 1032-1115 14-97 (105)
97 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.4E-17 144.5 31.2 234 95-463 2-259 (273)
98 2dh8_A DAZ-associated protein 99.6 6.7E-15 2.3E-19 138.3 10.4 85 1030-1115 13-97 (105)
99 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1E-14 3.5E-19 136.3 11.4 83 1032-1115 11-94 (102)
100 2dgo_A Cytotoxic granule-assoc 99.6 3.9E-14 1.3E-18 135.5 15.7 85 1030-1115 12-97 (115)
101 2dnm_A SRP46 splicing factor; 99.6 9.1E-15 3.1E-19 136.9 10.7 83 1032-1115 12-95 (103)
102 1wi8_A EIF-4B, eukaryotic tran 99.6 1.7E-14 5.7E-19 135.4 12.5 82 1031-1114 13-95 (104)
103 3s7r_A Heterogeneous nuclear r 99.6 9.8E-15 3.3E-19 132.1 10.5 80 1030-1110 8-87 (87)
104 2lkz_A RNA-binding protein 5; 99.6 5.5E-15 1.9E-19 135.5 8.8 80 1032-1112 8-94 (95)
105 1ouv_A Conserved hypothetical 99.6 2.4E-12 8.2E-17 142.4 31.6 228 131-491 2-253 (273)
106 1x4a_A Splicing factor, argini 99.6 4E-14 1.4E-18 134.0 14.6 80 1031-1114 20-100 (109)
107 1x4h_A RNA-binding protein 28; 99.6 2.2E-14 7.5E-19 136.3 12.8 84 1031-1115 13-103 (111)
108 1x5s_A Cold-inducible RNA-bind 99.6 1.4E-14 4.7E-19 135.4 11.1 83 1032-1115 11-94 (102)
109 2jwn_A Embryonic polyadenylate 99.5 1E-14 3.6E-19 141.5 10.4 83 1032-1115 35-117 (124)
110 1wez_A HnRNP H', FTP-3, hetero 99.5 7.7E-15 2.6E-19 136.9 9.0 79 1032-1113 14-92 (102)
111 2cpe_A RNA-binding protein EWS 99.5 2.5E-14 8.6E-19 136.3 12.6 85 1030-1115 12-105 (113)
112 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.8E-14 6.1E-19 130.3 11.0 81 1032-1113 5-86 (87)
113 2khc_A Testis-specific RNP-typ 99.5 4.1E-14 1.4E-18 136.0 14.1 80 1031-1111 38-118 (118)
114 3md1_A Nuclear and cytoplasmic 99.5 2.4E-14 8.1E-19 128.2 11.6 80 1034-1114 2-82 (83)
115 3ucg_A Polyadenylate-binding p 99.5 9.1E-15 3.1E-19 132.9 8.9 83 1032-1115 5-87 (89)
116 2cqg_A TDP-43, TAR DNA-binding 99.5 3.6E-14 1.2E-18 132.8 13.1 83 1031-1115 13-95 (103)
117 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.7E-14 5.7E-19 129.9 10.5 79 1032-1111 6-85 (85)
118 1s79_A Lupus LA protein; RRM, 99.5 8.3E-15 2.8E-19 136.7 8.6 81 1030-1112 8-88 (103)
119 2rs2_A Musashi-1, RNA-binding 99.5 1.7E-14 5.9E-19 136.4 10.8 83 1031-1114 23-105 (109)
120 2dgp_A Bruno-like 4, RNA bindi 99.5 2.5E-14 8.4E-19 134.7 11.8 84 1030-1114 10-97 (106)
121 2cq4_A RNA binding motif prote 99.5 5.7E-15 1.9E-19 141.1 7.2 83 1030-1113 22-104 (114)
122 1x4c_A Splicing factor, argini 99.5 4.3E-14 1.5E-18 133.5 13.2 77 1032-1116 14-96 (108)
123 2cph_A RNA binding motif prote 99.5 3.5E-14 1.2E-18 133.9 12.6 85 1030-1115 12-99 (107)
124 2x1f_A MRNA 3'-END-processing 99.5 2.4E-14 8.2E-19 132.1 11.0 81 1033-1114 2-83 (96)
125 2d9p_A Polyadenylate-binding p 99.5 3.4E-14 1.2E-18 133.0 12.1 83 1030-1115 12-95 (103)
126 2jrs_A RNA-binding protein 39; 99.5 3E-14 1E-18 134.5 11.7 83 1031-1114 24-107 (108)
127 2do4_A Squamous cell carcinoma 99.5 4.8E-14 1.6E-18 131.2 12.7 83 1031-1115 15-98 (100)
128 2cpf_A RNA binding motif prote 99.5 4.6E-14 1.6E-18 130.8 12.1 83 1032-1115 4-90 (98)
129 2e5h_A Zinc finger CCHC-type a 99.5 4.6E-14 1.6E-18 129.7 11.5 79 1032-1111 15-94 (94)
130 3nf1_A KLC 1, kinesin light ch 99.5 1.8E-13 6E-18 153.3 18.7 134 357-491 154-309 (311)
131 2dnh_A Bruno-like 5, RNA bindi 99.5 6.7E-14 2.3E-18 131.5 12.8 82 1032-1115 14-99 (105)
132 1oo0_B CG8781-PA, drosophila Y 99.5 4.1E-14 1.4E-18 134.1 11.4 84 1031-1115 24-108 (110)
133 1p27_B RNA-binding protein 8A; 99.5 3.6E-14 1.2E-18 133.6 10.9 83 1031-1114 21-104 (106)
134 3ulq_A Response regulator aspa 99.5 1.4E-12 4.7E-17 152.1 27.0 315 99-491 16-370 (383)
135 3n9u_C Cleavage and polyadenyl 99.5 2.5E-14 8.4E-19 144.2 10.3 80 1032-1112 54-136 (156)
136 3p5t_L Cleavage and polyadenyl 99.5 7.7E-15 2.6E-19 133.7 6.0 81 1034-1115 2-85 (90)
137 2dhg_A TRNA selenocysteine ass 99.5 3.3E-14 1.1E-18 133.3 10.5 81 1032-1114 8-91 (104)
138 3as5_A MAMA; tetratricopeptide 99.5 5.9E-13 2E-17 136.3 20.8 172 355-535 7-178 (186)
139 2pzi_A Probable serine/threoni 99.5 3.6E-13 1.2E-17 169.5 23.1 249 350-613 388-661 (681)
140 3ns6_A Eukaryotic translation 99.5 8.8E-15 3E-19 136.1 6.2 81 1032-1113 5-93 (100)
141 2cpy_A RNA-binding protein 12; 99.5 2.9E-14 1E-18 136.0 9.8 81 1031-1113 13-94 (114)
142 2dgu_A Heterogeneous nuclear r 99.5 8.9E-14 3E-18 130.1 12.9 75 1032-1115 10-85 (103)
143 2cqc_A Arginine/serine-rich sp 99.5 6.3E-14 2.2E-18 129.0 11.6 81 1031-1112 13-94 (95)
144 2cqp_A RNA-binding protein 12; 99.5 6E-14 2.1E-18 130.0 11.4 81 1032-1113 14-95 (98)
145 4f25_A Polyadenylate-binding p 99.5 5.2E-14 1.8E-18 134.5 11.2 79 1033-1114 5-84 (115)
146 3qky_A Outer membrane assembly 99.5 6.4E-13 2.2E-17 146.1 21.7 190 351-545 10-239 (261)
147 2div_A TRNA selenocysteine ass 99.5 4.6E-14 1.6E-18 131.1 10.5 82 1032-1114 8-95 (99)
148 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.3E-13 4.3E-18 129.1 13.4 82 1030-1114 12-94 (103)
149 4gyw_A UDP-N-acetylglucosamine 99.5 2.5E-13 8.5E-18 170.6 20.4 166 316-491 11-176 (723)
150 2la6_A RNA-binding protein FUS 99.5 5.7E-14 2E-18 130.4 10.9 79 1032-1111 12-99 (99)
151 2cq3_A RNA-binding protein 9; 99.5 1.8E-13 6.2E-18 128.0 14.2 83 1030-1115 12-95 (103)
152 1sjq_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 130.8 9.4 77 1032-1115 15-94 (105)
153 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.5E-14 5E-19 134.6 6.2 81 1032-1114 18-99 (100)
154 2mss_A Protein (musashi1); RNA 99.5 2.4E-14 8.1E-19 125.6 7.0 75 1035-1110 1-75 (75)
155 2dgw_A Probable RNA-binding pr 99.5 1.1E-13 3.6E-18 126.4 11.6 80 1032-1114 9-88 (91)
156 2m2b_A RNA-binding protein 10; 99.5 2.8E-14 9.6E-19 139.8 8.2 82 1031-1114 21-109 (131)
157 1wg5_A Heterogeneous nuclear r 99.5 1E-13 3.5E-18 129.9 11.7 80 1032-1113 14-94 (104)
158 2dgv_A HnRNP M, heterogeneous 99.5 8.7E-14 3E-18 127.2 10.6 80 1032-1114 7-87 (92)
159 2dnq_A RNA-binding protein 4B; 99.5 1.5E-13 5.2E-18 125.1 12.0 75 1032-1115 7-82 (90)
160 3ulq_A Response regulator aspa 99.5 9.5E-12 3.2E-16 145.0 30.7 239 320-567 109-368 (383)
161 4a8x_A RNA-binding protein wit 99.5 8E-14 2.7E-18 126.3 10.2 81 1033-1114 4-86 (88)
162 4i17_A Hypothetical protein; T 99.5 1.2E-12 4.2E-17 140.5 21.2 166 317-492 10-212 (228)
163 2fc8_A NCL protein; structure 99.5 1.2E-13 4E-18 129.1 11.2 79 1032-1114 14-93 (102)
164 2dgx_A KIAA0430 protein; RRM d 99.5 1.5E-13 5.2E-18 126.7 11.6 79 1032-1114 8-91 (96)
165 2ywk_A Putative RNA-binding pr 99.5 1E-13 3.4E-18 127.6 10.4 81 1030-1112 13-94 (95)
166 3as5_A MAMA; tetratricopeptide 99.5 2.2E-12 7.7E-17 132.0 21.5 168 316-493 10-177 (186)
167 2hgn_A Heterogeneous nuclear r 99.5 1.3E-14 4.4E-19 142.6 4.2 79 1032-1113 45-123 (139)
168 2fc9_A NCL protein; structure 99.5 2E-13 6.8E-18 127.2 12.1 79 1031-1114 13-92 (101)
169 2kxn_B Transformer-2 protein h 99.5 7.2E-14 2.5E-18 136.2 9.4 82 1032-1114 45-127 (129)
170 2lcw_A RNA-binding protein FUS 99.2 3.5E-15 1.2E-19 143.0 0.0 83 1031-1114 5-96 (116)
171 3r27_A HnRNP L, heterogeneous 99.5 1.2E-13 4E-18 126.6 10.0 75 1032-1113 20-97 (100)
172 3nf1_A KLC 1, kinesin light ch 99.5 1.2E-12 4.1E-17 146.5 20.5 247 316-567 29-307 (311)
173 3beg_B Splicing factor, argini 99.5 5.5E-14 1.9E-18 134.3 8.0 75 1032-1114 15-95 (115)
174 2wbr_A GW182, gawky, LD47780P; 99.5 1.1E-13 3.7E-18 121.9 9.1 72 1033-1111 7-79 (89)
175 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.4E-13 4.9E-18 140.6 11.5 83 1032-1115 71-154 (165)
176 2dgt_A RNA-binding protein 30; 99.5 3.1E-13 1.1E-17 123.5 12.6 75 1032-1115 9-84 (92)
177 2cpx_A Hypothetical protein FL 99.5 1.3E-13 4.6E-18 131.7 10.5 83 1032-1115 24-107 (115)
178 2do0_A HnRNP M, heterogeneous 99.5 4.7E-13 1.6E-17 127.7 14.3 82 1031-1114 13-95 (114)
179 1fj7_A Nucleolin RBD1, protein 99.5 3.7E-14 1.3E-18 132.2 6.4 81 1032-1114 16-96 (101)
180 2kvi_A Nuclear polyadenylated 99.5 9.7E-14 3.3E-18 128.0 9.1 75 1032-1115 9-85 (96)
181 1wel_A RNA-binding protein 12; 99.5 7.8E-14 2.7E-18 135.3 8.7 80 1032-1112 24-103 (124)
182 4ga2_A E3 SUMO-protein ligase 99.5 3.8E-13 1.3E-17 135.0 14.0 145 321-475 4-149 (150)
183 1p1t_A Cleavage stimulation fa 99.5 5.6E-14 1.9E-18 131.7 7.3 83 1031-1114 6-89 (104)
184 2dis_A Unnamed protein product 99.5 2E-13 6.8E-18 129.1 11.0 84 1032-1115 7-94 (109)
185 2err_A Ataxin-2-binding protei 99.5 1.9E-13 6.4E-18 129.3 10.6 79 1032-1113 28-107 (109)
186 2ek1_A RNA-binding protein 12; 99.5 1.2E-13 4.2E-18 127.0 9.1 80 1032-1112 14-94 (95)
187 2cq1_A PTB-like protein L; RRM 99.5 4.5E-13 1.5E-17 124.2 12.8 78 1031-1115 13-93 (101)
188 2dnn_A RNA-binding protein 12; 99.5 1.6E-13 5.4E-18 129.1 9.8 78 1032-1112 15-92 (109)
189 3urz_A Uncharacterized protein 99.5 1.8E-12 6E-17 137.8 19.2 169 356-534 4-190 (208)
190 3ulh_A THO complex subunit 4; 99.5 2.9E-13 1E-17 127.5 11.6 79 1031-1111 27-106 (107)
191 1iqt_A AUF1, heterogeneous nuc 99.4 4.1E-14 1.4E-18 124.0 4.9 75 1035-1110 1-75 (75)
192 2nlw_A Eukaryotic translation 99.4 1.6E-13 5.3E-18 128.9 9.2 79 1032-1113 14-100 (105)
193 1uaw_A Mouse-musashi-1; RNP-ty 99.4 7.7E-14 2.6E-18 122.9 6.5 76 1034-1110 1-76 (77)
194 2kn4_A Immunoglobulin G-bindin 99.4 3.2E-13 1.1E-17 137.0 11.8 83 1032-1115 69-152 (158)
195 2ad9_A Polypyrimidine tract-bi 99.4 3.1E-13 1.1E-17 128.4 10.8 78 1031-1115 29-109 (119)
196 1x4d_A Matrin 3; structural ge 99.4 3.1E-13 1.1E-17 125.1 10.5 76 1032-1114 14-93 (102)
197 2db1_A Heterogeneous nuclear r 99.4 1.8E-13 6.2E-18 131.3 9.3 79 1032-1112 16-97 (118)
198 2lea_A Serine/arginine-rich sp 99.4 1.1E-13 3.8E-18 136.1 7.9 84 1031-1115 45-129 (135)
199 2cpi_A CCR4-NOT transcription 99.4 2.8E-13 9.6E-18 128.5 10.5 82 1032-1114 14-102 (111)
200 2jvr_A Nucleolar protein 3; RN 99.4 1.7E-13 5.7E-18 129.2 8.7 77 1032-1113 27-105 (111)
201 2cpd_A Apobec-1 stimulating pr 99.4 8.1E-13 2.8E-17 122.6 13.3 74 1032-1114 14-90 (99)
202 3dra_A Protein farnesyltransfe 99.4 1.9E-11 6.5E-16 137.2 26.8 234 116-468 48-301 (306)
203 2hgl_A HNRPF protein, heteroge 99.4 1.5E-13 5.2E-18 134.5 8.5 80 1031-1112 42-124 (136)
204 1fjc_A Nucleolin RBD2, protein 99.4 2E-13 6.9E-18 125.9 8.8 79 1030-1114 13-92 (96)
205 1x4e_A RNA binding motif, sing 99.4 5.8E-14 2E-18 126.3 5.0 79 1032-1111 4-83 (85)
206 2kt5_A RNA and export factor-b 99.4 1.2E-12 4.2E-17 126.8 14.5 82 1031-1114 33-115 (124)
207 2e5j_A Methenyltetrahydrofolat 99.4 4.7E-13 1.6E-17 123.6 11.0 78 1031-1114 17-95 (97)
208 2dnp_A RNA-binding protein 14; 99.4 5.3E-13 1.8E-17 121.5 11.1 74 1032-1114 8-82 (90)
209 2a3j_A U1 small nuclear ribonu 99.4 3.2E-13 1.1E-17 130.6 10.1 79 1032-1114 28-111 (127)
210 2xs2_A Deleted in azoospermia- 99.4 1.3E-13 4.3E-18 128.8 7.0 81 1031-1114 7-87 (102)
211 2cqh_A IGF-II mRNA-binding pro 99.4 4E-13 1.4E-17 123.1 10.1 75 1032-1114 7-84 (93)
212 1x4f_A Matrin 3; structural ge 99.4 6.2E-13 2.1E-17 124.9 11.3 78 1030-1114 22-103 (112)
213 3nv0_A Nuclear RNA export fact 99.4 6.7E-13 2.3E-17 137.8 12.7 118 721-838 13-183 (205)
214 2pzi_A Probable serine/threoni 99.4 4.5E-12 1.5E-16 159.6 23.0 179 325-512 402-580 (681)
215 1wex_A Hypothetical protein (r 99.4 1E-12 3.6E-17 122.4 12.8 76 1032-1114 14-92 (104)
216 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 6.8E-13 2.3E-17 131.6 12.3 79 1031-1110 61-140 (140)
217 2krb_A Eukaryotic translation 99.4 1.4E-13 4.9E-18 122.5 6.5 71 1034-1107 2-80 (81)
218 1x5o_A RNA binding motif, sing 99.4 9.5E-13 3.3E-17 125.5 12.5 82 1030-1113 22-112 (114)
219 2ki2_A SS-DNA binding protein 99.4 8.3E-14 2.8E-18 126.8 4.9 79 1034-1114 2-81 (90)
220 1wf1_A RNA-binding protein RAL 99.4 5.1E-13 1.8E-17 126.5 10.5 74 1032-1114 26-101 (110)
221 2lmi_A GRSF-1, G-rich sequence 99.4 1.2E-13 4.2E-18 130.1 6.0 80 1031-1112 9-91 (107)
222 2e5g_A U6 snRNA-specific termi 99.4 8.1E-13 2.8E-17 121.3 11.1 77 1032-1114 7-83 (94)
223 2xnq_A Nuclear polyadenylated 99.4 8.7E-13 3E-17 121.8 11.0 73 1032-1113 21-95 (97)
224 2hvz_A Splicing factor, argini 99.4 4.3E-13 1.5E-17 124.9 8.8 75 1034-1114 1-76 (101)
225 2dha_A FLJ20171 protein; RRM d 99.4 2.2E-13 7.7E-18 130.9 7.0 79 1032-1112 22-104 (123)
226 1x4g_A Nucleolysin TIAR; struc 99.4 9.5E-13 3.2E-17 124.5 11.2 78 1031-1115 23-101 (109)
227 1qqe_A Vesicular transport pro 99.4 3.9E-11 1.3E-15 134.5 26.5 214 329-567 32-269 (292)
228 1nu4_A U1A RNA binding domain; 99.4 4E-13 1.4E-17 124.2 8.3 79 1032-1114 7-90 (97)
229 2cpj_A Non-POU domain-containi 99.4 1E-12 3.5E-17 121.9 11.1 76 1032-1114 14-90 (99)
230 2la4_A Nuclear and cytoplasmic 99.4 5.5E-13 1.9E-17 124.2 9.0 75 1032-1113 26-101 (101)
231 4ga2_A E3 SUMO-protein ligase 99.4 6.7E-13 2.3E-17 133.2 10.0 144 363-515 4-148 (150)
232 2jvo_A Nucleolar protein 3; nu 99.4 8.7E-13 3E-17 124.3 10.0 75 1031-1114 29-104 (108)
233 3dra_A Protein farnesyltransfe 99.4 4.1E-11 1.4E-15 134.5 25.2 231 316-566 35-286 (306)
234 1x5p_A Negative elongation fac 99.4 2.5E-12 8.7E-17 118.7 12.7 74 1032-1114 14-88 (97)
235 3dss_A Geranylgeranyl transfer 99.4 1.2E-10 4.1E-15 131.4 28.9 237 331-595 47-320 (331)
236 3q15_A PSP28, response regulat 99.4 4.9E-11 1.7E-15 138.8 26.8 314 100-490 17-366 (378)
237 2hgm_A HNRPF protein, heteroge 99.4 4.5E-13 1.5E-17 129.0 7.5 78 1032-1112 41-120 (126)
238 1hz4_A MALT regulatory protein 99.4 3.4E-10 1.2E-14 131.0 33.2 236 322-569 101-351 (373)
239 1why_A Hypothetical protein ri 99.4 1.2E-12 4.1E-17 121.0 9.9 77 1032-1115 16-95 (97)
240 3edt_B KLC 2, kinesin light ch 99.4 1.1E-11 3.8E-16 136.1 19.5 226 330-567 24-281 (283)
241 1qqe_A Vesicular transport pro 99.4 7.6E-12 2.6E-16 140.4 18.4 219 316-539 39-278 (292)
242 2ytc_A PRE-mRNA-splicing facto 99.4 2E-12 6.7E-17 116.2 10.7 74 1031-1111 10-85 (85)
243 3qky_A Outer membrane assembly 99.4 1.4E-11 4.7E-16 135.4 19.6 168 319-493 20-228 (261)
244 2yhc_A BAMD, UPF0169 lipoprote 99.4 2.6E-11 9E-16 130.2 21.2 173 356-534 4-217 (225)
245 2j8a_A Histone-lysine N-methyl 99.4 8.8E-13 3E-17 123.8 8.2 78 1034-1112 3-95 (136)
246 3d2w_A TAR DNA-binding protein 99.4 1E-12 3.5E-17 119.1 8.5 77 1031-1114 9-85 (89)
247 2r5s_A Uncharacterized protein 99.4 4.1E-12 1.4E-16 130.9 14.1 166 356-529 6-172 (176)
248 3q15_A PSP28, response regulat 99.4 2.7E-10 9.2E-15 132.5 31.2 240 318-566 105-364 (378)
249 1l3k_A Heterogeneous nuclear r 99.3 2.1E-12 7.1E-17 135.8 10.9 82 1033-1115 104-185 (196)
250 1wf0_A TDP-43, TAR DNA-binding 99.3 1E-12 3.4E-17 119.1 6.9 76 1032-1114 4-79 (88)
251 1whx_A Hypothetical protein ri 99.3 1.6E-12 5.3E-17 123.3 8.1 75 1032-1113 9-84 (111)
252 3lqv_A PRE-mRNA branch site pr 99.3 2.6E-12 8.9E-17 122.7 9.8 78 1032-1113 7-85 (115)
253 3edt_B KLC 2, kinesin light ch 99.3 4.1E-11 1.4E-15 131.6 20.6 232 368-610 13-281 (283)
254 3urz_A Uncharacterized protein 99.3 3E-11 1E-15 128.2 18.4 163 319-492 9-189 (208)
255 3egn_A RNA-binding protein 40; 99.3 1.5E-12 5.1E-17 129.6 7.4 83 1032-1114 44-131 (143)
256 2vsy_A XCC0866; transferase, g 99.3 3.6E-11 1.2E-15 148.2 20.9 162 369-539 2-166 (568)
257 1l3k_A Heterogeneous nuclear r 99.3 4.9E-12 1.7E-16 132.9 11.2 82 1031-1113 11-92 (196)
258 1sjr_A Polypyrimidine tract-bi 99.3 7.2E-12 2.4E-16 125.0 11.5 78 1033-1115 46-126 (164)
259 4f02_A Polyadenylate-binding p 99.3 5.2E-12 1.8E-16 134.8 11.3 81 1032-1113 14-95 (213)
260 2cq2_A Hypothetical protein LO 99.3 4.4E-12 1.5E-16 119.1 9.3 78 1031-1115 23-108 (114)
261 2f3j_A RNA and export factor b 99.3 5.6E-12 1.9E-16 129.8 10.6 81 1031-1113 86-167 (177)
262 1hz4_A MALT regulatory protein 99.3 1.3E-09 4.3E-14 126.2 31.7 285 315-613 15-325 (373)
263 3qou_A Protein YBBN; thioredox 99.3 3.1E-11 1.1E-15 135.0 17.5 170 353-529 114-283 (287)
264 2e44_A Insulin-like growth fac 99.3 6E-12 2.1E-16 115.9 9.6 78 1032-1113 14-92 (96)
265 4gco_A Protein STI-1; structur 99.3 3.4E-11 1.2E-15 116.9 15.4 118 351-470 8-125 (126)
266 2i2y_A Fusion protein consists 99.3 4.8E-12 1.6E-16 127.1 9.4 77 1032-1114 72-149 (150)
267 3zzy_A Polypyrimidine tract-bi 99.3 1.6E-11 5.5E-16 118.0 12.3 76 1033-1114 28-107 (130)
268 2diu_A KIAA0430 protein; struc 99.3 1.6E-11 5.5E-16 109.1 10.9 71 1034-1115 10-86 (96)
269 2cjk_A Nuclear polyadenylated 99.3 4.1E-12 1.4E-16 129.8 8.2 80 1033-1113 87-166 (167)
270 1wg1_A KIAA1579 protein, homol 99.3 6.3E-12 2.2E-16 113.7 8.5 74 1032-1113 4-78 (88)
271 2dnl_A Cytoplasmic polyadenyla 99.3 6.6E-12 2.3E-16 119.6 9.0 78 1032-1112 7-87 (114)
272 1b89_A Protein (clathrin heavy 99.3 3.9E-11 1.3E-15 139.0 17.0 311 115-548 17-341 (449)
273 3md3_A Nuclear and cytoplasmic 99.3 1.8E-11 6.1E-16 124.7 12.6 79 1032-1111 86-165 (166)
274 1fxl_A Paraneoplastic encephal 99.3 1.4E-11 4.9E-16 125.6 11.4 81 1033-1114 2-83 (167)
275 1b7f_A Protein (SXL-lethal pro 99.3 1.1E-11 3.8E-16 126.6 10.6 82 1032-1114 2-84 (168)
276 3gyz_A Chaperone protein IPGC; 99.3 8.2E-11 2.8E-15 118.1 16.6 124 327-460 15-138 (151)
277 2r5s_A Uncharacterized protein 99.3 3.9E-11 1.3E-15 123.5 14.1 159 320-489 12-173 (176)
278 2voo_A Lupus LA protein; RNA-b 99.2 1.3E-11 4.6E-16 129.0 10.3 79 1032-1112 108-186 (193)
279 2qfj_A FBP-interacting repress 99.2 1.8E-11 6.3E-16 130.6 11.6 83 1032-1115 124-207 (216)
280 3gyz_A Chaperone protein IPGC; 99.2 2.1E-11 7.3E-16 122.3 10.6 112 88-202 25-136 (151)
281 3qou_A Protein YBBN; thioredox 99.2 1.7E-10 5.9E-15 129.0 19.1 169 386-566 113-283 (287)
282 2hzc_A Splicing factor U2AF 65 99.2 1.7E-11 5.8E-16 110.5 8.8 71 1032-1109 5-86 (87)
283 2vsy_A XCC0866; transferase, g 99.2 1.1E-10 3.8E-15 143.8 19.0 155 328-492 3-160 (568)
284 2e5i_A Heterogeneous nuclear r 99.2 1.1E-10 3.6E-15 111.9 14.2 74 1034-1114 26-103 (124)
285 2vgx_A Chaperone SYCD; alterna 99.2 5.2E-11 1.8E-15 119.1 12.7 119 83-204 5-123 (148)
286 2yh0_A Splicing factor U2AF 65 99.2 2.9E-11 9.9E-16 127.2 11.3 82 1032-1114 113-195 (198)
287 2fo7_A Synthetic consensus TPR 99.2 4.4E-10 1.5E-14 107.9 18.3 133 357-491 2-134 (136)
288 4f02_A Polyadenylate-binding p 99.2 7.5E-12 2.6E-16 133.6 6.2 78 1033-1113 103-181 (213)
289 2bz2_A Negative elongation fac 99.2 3E-11 1E-15 116.1 9.5 74 1032-1114 38-112 (121)
290 2ifu_A Gamma-SNAP; membrane fu 99.2 3.8E-10 1.3E-14 127.4 20.2 203 328-534 5-227 (307)
291 2cjk_A Nuclear polyadenylated 99.2 1.9E-11 6.5E-16 124.8 8.5 79 1032-1112 2-80 (167)
292 2yhc_A BAMD, UPF0169 lipoprote 99.2 4.1E-10 1.4E-14 120.8 19.4 166 320-492 10-216 (225)
293 3dss_A Geranylgeranyl transfer 99.2 8.1E-09 2.8E-13 116.4 30.7 230 367-613 40-307 (331)
294 2fo7_A Synthetic consensus TPR 99.2 5.8E-10 2E-14 107.0 18.2 135 391-534 2-136 (136)
295 4gco_A Protein STI-1; structur 99.2 1.6E-10 5.4E-15 112.1 13.9 121 381-509 4-124 (126)
296 2g4b_A Splicing factor U2AF 65 99.2 3.1E-11 1.1E-15 123.8 9.3 77 1033-1110 94-171 (172)
297 2pe8_A Splicing factor 45; RRM 99.2 7.9E-11 2.7E-15 109.9 10.9 80 1032-1112 7-93 (105)
298 3md3_A Nuclear and cytoplasmic 99.2 6.8E-11 2.3E-15 120.3 11.0 79 1034-1114 1-80 (166)
299 4h7y_A Dual specificity protei 99.2 1.5E-10 5.1E-15 111.1 12.0 109 351-462 8-130 (161)
300 2xcb_A PCRH, regulatory protei 99.2 1.7E-10 6E-15 114.1 12.7 116 86-204 5-120 (142)
301 3q7a_A Farnesyltransferase alp 99.2 3.6E-09 1.2E-13 119.9 25.0 245 356-613 54-334 (349)
302 2vgx_A Chaperone SYCD; alterna 99.2 1.8E-10 6.1E-15 115.2 12.7 114 377-492 8-121 (148)
303 2qfj_A FBP-interacting repress 99.1 4.9E-11 1.7E-15 127.3 8.9 81 1032-1113 27-108 (216)
304 3tyt_A Heterogeneous nuclear r 99.1 8.7E-11 3E-15 124.1 10.5 76 1032-1113 3-80 (205)
305 1fje_B Nucleolin RBD12, protei 99.1 8.6E-11 3E-15 121.0 10.2 76 1032-1113 98-174 (175)
306 1q42_A MTR2, mRNA transport re 99.1 5.4E-11 1.9E-15 116.6 8.0 106 718-824 23-146 (201)
307 2xcb_A PCRH, regulatory protei 99.1 2.7E-10 9.3E-15 112.7 13.4 110 351-462 13-122 (142)
308 4f3v_A ESX-1 secretion system 99.1 1.3E-10 4.5E-15 127.5 11.6 207 326-549 18-255 (282)
309 1fje_B Nucleolin RBD12, protei 99.1 2.8E-11 9.6E-16 124.7 5.9 82 1031-1114 11-92 (175)
310 1b7f_A Protein (SXL-lethal pro 99.1 1.6E-10 5.4E-15 118.0 10.8 78 1032-1110 88-168 (168)
311 1p5q_A FKBP52, FK506-binding p 99.1 1.2E-10 4.2E-15 133.4 11.1 154 368-530 125-294 (336)
312 3pgw_A U1-A; protein-RNA compl 99.1 6.9E-10 2.4E-14 123.8 16.8 75 1031-1111 205-281 (282)
313 1a17_A Serine/threonine protei 99.1 1.6E-09 5.3E-14 109.0 17.8 134 356-491 13-148 (166)
314 1p5q_A FKBP52, FK506-binding p 99.1 1.8E-10 6.2E-15 132.0 12.1 138 351-490 142-295 (336)
315 3nmr_A Cugbp ELAV-like family 99.1 1.5E-10 5E-15 119.0 10.1 82 1032-1114 2-89 (175)
316 2c2l_A CHIP, carboxy terminus 99.1 1.2E-10 4.3E-15 129.7 10.3 197 355-567 3-199 (281)
317 1b89_A Protein (clathrin heavy 99.1 1.1E-10 3.7E-15 135.2 9.2 281 81-484 19-306 (449)
318 3q7a_A Farnesyltransferase alp 99.1 4E-09 1.4E-13 119.5 21.7 231 315-565 55-329 (349)
319 2e2e_A Formate-dependent nitri 99.1 1.6E-09 5.6E-14 111.0 16.9 124 368-493 22-148 (177)
320 3rjv_A Putative SEL1 repeat pr 99.1 4.3E-09 1.5E-13 111.9 20.7 177 332-532 4-199 (212)
321 1fxl_A Paraneoplastic encephal 99.1 2E-10 6.9E-15 116.9 9.8 77 1033-1110 88-167 (167)
322 3pgw_A U1-A; protein-RNA compl 99.1 2.4E-10 8.1E-15 127.5 11.2 80 1031-1114 7-91 (282)
323 2ifu_A Gamma-SNAP; membrane fu 99.1 4.6E-09 1.6E-13 118.5 21.6 200 392-603 38-254 (307)
324 3u1l_A PRE-mRNA-splicing facto 99.1 1.4E-10 4.8E-15 123.8 8.4 79 1030-1115 131-231 (240)
325 2d9o_A DNAJ (HSP40) homolog, s 99.1 8.3E-10 2.8E-14 101.6 12.4 75 1033-1114 10-91 (100)
326 4h7y_A Dual specificity protei 99.1 1E-09 3.6E-14 105.3 13.2 105 130-239 8-126 (161)
327 3upv_A Heat shock protein STI1 99.1 2.7E-09 9.3E-14 102.6 16.2 114 356-471 4-123 (126)
328 2e2e_A Formate-dependent nitri 99.1 2.5E-09 8.6E-14 109.5 16.8 122 79-203 24-148 (177)
329 2dit_A HIV TAT specific factor 99.1 1E-09 3.4E-14 104.0 12.5 78 1032-1114 14-103 (112)
330 2lni_A Stress-induced-phosphop 99.1 2E-09 6.9E-14 103.6 14.9 124 350-475 10-133 (133)
331 3nmr_A Cugbp ELAV-like family 99.1 3.2E-10 1.1E-14 116.4 9.7 77 1032-1110 94-174 (175)
332 2vyi_A SGTA protein; chaperone 99.0 2.8E-09 9.7E-14 101.8 15.5 124 351-476 7-130 (131)
333 2ghp_A U4/U6 snRNA-associated 99.0 3.9E-10 1.3E-14 126.4 9.2 81 1032-1113 209-291 (292)
334 2yh0_A Splicing factor U2AF 65 99.0 1.7E-10 5.9E-15 121.2 5.8 83 1032-1114 3-89 (198)
335 3upv_A Heat shock protein STI1 99.0 3.9E-09 1.3E-13 101.5 14.9 119 389-509 3-121 (126)
336 1hh8_A P67PHOX, NCF-2, neutrop 99.0 5.5E-09 1.9E-13 110.1 17.4 136 393-534 9-154 (213)
337 2adc_A Polypyrimidine tract-bi 99.0 8.1E-10 2.8E-14 119.1 11.0 77 1032-1114 33-111 (229)
338 1a17_A Serine/threonine protei 99.0 8.2E-09 2.8E-13 103.6 17.8 132 390-530 13-146 (166)
339 2qfc_A PLCR protein; TPR, HTH, 99.0 2.1E-08 7.1E-13 112.1 22.6 175 355-530 74-266 (293)
340 3sde_A Paraspeckle component 1 99.0 8.7E-10 3E-14 121.4 10.9 76 1031-1113 20-96 (261)
341 3sz7_A HSC70 cochaperone (SGT) 99.0 3.5E-09 1.2E-13 107.2 14.6 115 352-468 7-121 (164)
342 1qm9_A Polypyrimidine tract-bi 99.0 6.4E-10 2.2E-14 117.0 9.2 76 1033-1114 3-80 (198)
343 3smz_A Protein raver-1, ribonu 99.0 1.2E-09 4.1E-14 122.0 11.8 81 1033-1114 95-176 (284)
344 1elw_A TPR1-domain of HOP; HOP 99.0 1E-08 3.5E-13 96.0 16.2 113 356-470 4-116 (118)
345 3u3w_A Transcriptional activat 99.0 1.9E-08 6.5E-13 112.5 20.8 174 357-531 76-267 (293)
346 3smz_A Protein raver-1, ribonu 99.0 1.2E-09 4.2E-14 121.8 10.9 81 1032-1114 183-265 (284)
347 2g4b_A Splicing factor U2AF 65 99.0 1.1E-09 3.7E-14 112.2 9.6 75 1032-1113 3-88 (172)
348 2fbn_A 70 kDa peptidylprolyl i 98.9 1.7E-09 5.9E-14 113.2 10.4 132 353-486 35-183 (198)
349 1na0_A Designed protein CTPR3; 98.9 2E-08 7E-13 94.8 17.0 117 356-474 9-125 (125)
350 3v4m_A Splicing factor U2AF 65 98.9 1.5E-09 5.2E-14 101.2 8.7 79 1032-1111 4-95 (105)
351 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.2E-08 4.1E-13 107.5 16.5 129 359-492 9-153 (213)
352 2c2l_A CHIP, carboxy terminus 98.9 8E-09 2.8E-13 115.0 15.5 167 387-570 1-167 (281)
353 1jmt_A Splicing factor U2AF 35 98.9 4.7E-10 1.6E-14 104.5 4.4 71 1038-1110 20-103 (104)
354 2ghp_A U4/U6 snRNA-associated 98.9 2.1E-09 7.2E-14 120.4 10.0 80 1030-1112 38-117 (292)
355 4f3v_A ESX-1 secretion system 98.9 5.2E-09 1.8E-13 114.8 12.7 192 368-570 18-240 (282)
356 3sde_A Paraspeckle component 1 98.9 2.2E-09 7.4E-14 118.2 9.8 80 1033-1114 96-180 (261)
357 1dce_A Protein (RAB geranylger 98.9 3.2E-08 1.1E-12 121.1 21.0 171 371-549 44-240 (567)
358 1hxi_A PEX5, peroxisome target 98.9 8.1E-09 2.8E-13 99.2 12.5 102 357-460 18-119 (121)
359 3q49_B STIP1 homology and U bo 98.9 1.1E-08 3.8E-13 99.4 13.7 95 356-451 9-103 (137)
360 3tyt_A Heterogeneous nuclear r 98.9 1.6E-09 5.4E-14 114.5 8.0 69 1032-1103 122-193 (205)
361 3sz7_A HSC70 cochaperone (SGT) 98.9 2.9E-08 9.9E-13 100.4 16.9 107 94-203 6-112 (164)
362 3gw4_A Uncharacterized protein 98.9 3E-08 1E-12 103.3 17.4 162 368-531 4-177 (203)
363 2fbn_A 70 kDa peptidylprolyl i 98.9 3.3E-09 1.1E-13 111.0 9.9 144 369-521 17-176 (198)
364 3q49_B STIP1 homology and U bo 98.9 2.8E-08 9.4E-13 96.6 15.8 122 93-217 3-126 (137)
365 2lni_A Stress-induced-phosphop 98.9 1.4E-08 4.7E-13 97.6 13.5 120 94-219 11-130 (133)
366 2vyi_A SGTA protein; chaperone 98.9 1.9E-08 6.6E-13 95.9 14.4 122 386-516 8-129 (131)
367 2dba_A Smooth muscle cell asso 98.9 2E-08 6.9E-13 98.6 14.7 120 351-472 23-145 (148)
368 3ue2_A Poly(U)-binding-splicin 98.9 4.9E-09 1.7E-13 99.7 9.7 79 1032-1111 19-107 (118)
369 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 2.6E-09 8.9E-14 127.7 9.8 133 352-486 264-412 (457)
370 1qm9_A Polypyrimidine tract-bi 98.9 1.8E-09 6.2E-14 113.5 7.3 76 1032-1113 119-197 (198)
371 2adc_A Polypyrimidine tract-bi 98.9 3.6E-09 1.2E-13 114.0 9.5 76 1032-1113 150-228 (229)
372 1dce_A Protein (RAB geranylger 98.9 4.2E-08 1.4E-12 120.0 19.8 165 330-510 45-236 (567)
373 3rjv_A Putative SEL1 repeat pr 98.9 5.2E-08 1.8E-12 103.4 18.1 181 374-568 4-198 (212)
374 2kck_A TPR repeat; tetratricop 98.9 1.1E-08 3.7E-13 94.9 11.2 106 94-202 1-109 (112)
375 1hxi_A PEX5, peroxisome target 98.9 1.3E-08 4.5E-13 97.7 11.8 100 391-492 18-117 (121)
376 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 3.6E-09 1.2E-13 126.5 9.3 152 368-528 246-413 (457)
377 3mv2_B Coatomer subunit epsilo 98.8 1.4E-07 4.9E-12 104.7 20.8 190 333-538 85-290 (310)
378 1elw_A TPR1-domain of HOP; HOP 98.8 7.4E-08 2.5E-12 90.0 16.0 109 427-543 6-114 (118)
379 1na0_A Designed protein CTPR3; 98.8 9.4E-08 3.2E-12 90.2 16.7 116 94-215 3-119 (125)
380 2hr2_A Hypothetical protein; a 98.8 4E-08 1.4E-12 97.9 14.4 110 355-493 10-135 (159)
381 4gcn_A Protein STI-1; structur 98.8 5.8E-08 2E-12 94.0 14.7 118 424-544 7-125 (127)
382 2dba_A Smooth muscle cell asso 98.8 1.2E-07 4E-12 93.0 17.0 117 422-546 25-144 (148)
383 1elr_A TPR2A-domain of HOP; HO 98.8 6.1E-08 2.1E-12 92.5 14.5 115 355-472 3-124 (131)
384 3rkv_A Putative peptidylprolyl 98.8 3.7E-08 1.3E-12 99.3 13.5 112 356-469 11-141 (162)
385 4gcn_A Protein STI-1; structur 98.8 8.8E-08 3E-12 92.6 15.4 100 356-457 8-114 (127)
386 2xev_A YBGF; tetratricopeptide 98.8 1.2E-07 4E-12 91.0 15.4 112 358-471 4-121 (129)
387 2kck_A TPR repeat; tetratricop 98.8 3.8E-08 1.3E-12 91.1 11.3 95 356-451 6-103 (112)
388 2if4_A ATFKBP42; FKBP-like, al 98.8 6.1E-09 2.1E-13 119.3 6.9 157 354-535 177-333 (338)
389 3mv2_B Coatomer subunit epsilo 98.8 3.6E-07 1.2E-11 101.5 20.8 199 355-572 70-287 (310)
390 3rkv_A Putative peptidylprolyl 98.8 3.7E-08 1.3E-12 99.3 11.9 102 390-492 11-129 (162)
391 3ro3_A PINS homolog, G-protein 98.7 1.6E-07 5.4E-12 92.9 16.2 140 392-533 11-161 (164)
392 2if4_A ATFKBP42; FKBP-like, al 98.7 1.3E-08 4.5E-13 116.5 9.2 100 391-492 231-331 (338)
393 1wao_1 Serine/threonine protei 98.7 1.1E-08 3.7E-13 122.9 8.3 133 358-492 8-153 (477)
394 2qfc_A PLCR protein; TPR, HTH, 98.7 1.1E-06 3.8E-11 98.0 23.8 173 388-566 73-265 (293)
395 3tht_A Alkylated DNA repair pr 98.7 2.4E-08 8.1E-13 112.4 10.0 74 1030-1110 15-96 (345)
396 2hr2_A Hypothetical protein; a 98.7 6.3E-08 2.1E-12 96.5 11.8 74 358-432 59-143 (159)
397 3gw4_A Uncharacterized protein 98.7 1.5E-07 5.1E-12 97.9 14.6 157 327-492 5-179 (203)
398 3u3w_A Transcriptional activat 98.7 3.9E-07 1.3E-11 101.6 17.9 164 322-491 83-268 (293)
399 2xev_A YBGF; tetratricopeptide 98.7 3.4E-07 1.2E-11 87.7 15.1 110 428-542 5-117 (129)
400 1zu2_A Mitochondrial import re 98.7 1.2E-07 4E-12 94.4 11.9 95 80-174 17-130 (158)
401 1ihg_A Cyclophilin 40; ppiase 98.7 1.3E-07 4.5E-12 109.5 14.2 121 357-479 224-360 (370)
402 1elr_A TPR2A-domain of HOP; HO 98.6 2.6E-07 8.7E-12 88.0 13.4 112 98-216 3-121 (131)
403 2dnr_A Synaptojanin-1; RRM dom 98.6 9.2E-08 3.1E-12 84.3 9.0 75 1032-1115 6-88 (91)
404 1wao_1 Serine/threonine protei 98.6 3.6E-08 1.2E-12 118.4 8.8 134 391-533 7-153 (477)
405 3k9i_A BH0479 protein; putativ 98.6 4.3E-08 1.5E-12 93.1 7.5 93 369-463 3-98 (117)
406 3k9i_A BH0479 protein; putativ 98.6 1E-07 3.5E-12 90.5 9.9 92 79-172 4-98 (117)
407 3s6e_A RNA-binding protein 39; 98.6 1.2E-07 4.1E-12 89.4 9.8 75 1032-1111 6-91 (114)
408 1ihg_A Cyclophilin 40; ppiase 98.6 4.6E-07 1.6E-11 104.9 16.0 125 390-522 223-362 (370)
409 3ro3_A PINS homolog, G-protein 98.6 5.7E-07 1.9E-11 88.8 13.8 135 356-491 9-160 (164)
410 2kat_A Uncharacterized protein 98.5 7.2E-07 2.5E-11 84.0 13.2 85 81-167 1-85 (115)
411 1zu2_A Mitochondrial import re 98.5 1.9E-07 6.5E-12 92.8 9.4 92 367-460 13-125 (158)
412 4b4t_Q 26S proteasome regulato 98.5 1.4E-06 4.9E-11 102.3 18.8 208 323-531 13-246 (434)
413 1owx_A Lupus LA protein, SS-B, 98.5 2.3E-07 8E-12 87.5 9.2 74 1029-1109 14-92 (121)
414 1of5_B MTR2, YKL186C, mRNA tra 98.5 2.2E-07 7.5E-12 90.3 8.6 100 721-824 16-121 (184)
415 4b4t_Q 26S proteasome regulato 98.4 2E-05 7E-10 92.3 25.7 195 367-566 15-244 (434)
416 2kat_A Uncharacterized protein 98.4 1.1E-06 3.7E-11 82.8 10.2 82 374-457 3-84 (115)
417 1ufw_A Synaptojanin 2; RNP dom 98.3 9E-07 3.1E-11 78.3 6.4 72 1032-1112 14-94 (95)
418 2l6j_A TPR repeat-containing p 98.2 1E-06 3.4E-11 81.7 5.8 90 98-190 3-98 (111)
419 1na3_A Designed protein CTPR2; 98.2 6.2E-06 2.1E-10 73.3 10.9 82 97-180 7-88 (91)
420 1na3_A Designed protein CTPR2; 98.2 9.8E-06 3.3E-10 71.9 12.2 81 356-437 9-89 (91)
421 3ma5_A Tetratricopeptide repea 98.2 2E-06 7E-11 79.0 7.6 71 94-166 2-72 (100)
422 2l6j_A TPR repeat-containing p 98.2 8.4E-07 2.9E-11 82.3 4.9 91 356-447 4-100 (111)
423 3u64_A Protein TP_0956; tetrat 98.2 5E-05 1.7E-09 82.3 18.8 84 373-458 180-272 (301)
424 3u64_A Protein TP_0956; tetrat 98.0 3.5E-05 1.2E-09 83.5 13.8 123 93-215 146-285 (301)
425 2kc7_A BFR218_protein; tetratr 98.0 1.3E-05 4.3E-10 72.9 8.2 88 104-202 5-93 (99)
426 2kc7_A BFR218_protein; tetratr 98.0 1.5E-05 5.2E-10 72.4 8.5 87 395-491 5-92 (99)
427 3ma5_A Tetratricopeptide repea 98.0 2.1E-05 7.2E-10 72.1 9.4 70 130-200 2-71 (100)
428 3dxb_A Thioredoxin N-terminall 97.9 1.1E-05 3.8E-10 86.1 7.1 66 1046-1111 142-211 (222)
429 3n71_A Histone lysine methyltr 97.9 6.7E-05 2.3E-09 89.6 13.9 137 400-538 319-472 (490)
430 4g26_A Pentatricopeptide repea 97.8 0.00072 2.5E-08 81.1 21.9 166 358-530 28-204 (501)
431 3bee_A Putative YFRE protein; 97.8 6.3E-05 2.2E-09 68.1 9.3 79 95-175 2-81 (93)
432 1klx_A Cysteine rich protein B 97.8 0.00028 9.7E-09 68.8 14.3 111 370-490 9-127 (138)
433 3esl_A Checkpoint serine/threo 97.8 0.00068 2.3E-08 69.2 16.7 130 116-249 7-160 (202)
434 4a1g_A Mitotic checkpoint seri 97.7 0.0004 1.4E-08 67.9 13.5 126 117-251 6-145 (152)
435 1klx_A Cysteine rich protein B 97.7 0.00071 2.4E-08 66.0 15.0 108 327-451 8-123 (138)
436 3esl_A Checkpoint serine/threo 97.6 0.00078 2.7E-08 68.7 14.8 98 353-451 27-141 (202)
437 3ly7_A Transcriptional activat 97.6 0.00061 2.1E-08 76.9 15.4 137 353-492 191-342 (372)
438 4aez_C MAD3, mitotic spindle c 97.6 0.00062 2.1E-08 70.7 14.1 126 116-249 50-195 (223)
439 3n71_A Histone lysine methyltr 97.6 0.00033 1.1E-08 83.6 14.0 97 324-420 319-423 (490)
440 3ly7_A Transcriptional activat 97.5 0.00097 3.3E-08 75.3 15.7 147 381-536 185-345 (372)
441 4g26_A Pentatricopeptide repea 97.5 0.0041 1.4E-07 74.5 21.8 162 321-490 33-205 (501)
442 3bee_A Putative YFRE protein; 97.5 0.00045 1.6E-08 62.4 10.0 71 386-458 2-75 (93)
443 1pc2_A Mitochondria fission pr 97.4 0.00095 3.2E-08 65.5 11.8 98 372-470 14-115 (152)
444 4a1g_A Mitotic checkpoint seri 97.4 0.002 6.7E-08 63.0 13.8 103 335-451 11-127 (152)
445 2wvi_A Mitotic checkpoint seri 97.3 0.0015 5.1E-08 64.8 12.3 119 122-249 4-141 (164)
446 4aez_C MAD3, mitotic spindle c 97.3 0.0016 5.4E-08 67.7 12.6 91 354-451 70-176 (223)
447 2l9w_A U4/U6 snRNA-associated- 97.3 0.00083 2.8E-08 60.6 8.7 71 1032-1109 20-96 (117)
448 2wvi_A Mitotic checkpoint seri 97.3 0.0022 7.7E-08 63.5 12.5 103 336-451 5-122 (164)
449 2v5f_A Prolyl 4-hydroxylase su 97.3 0.003 1E-07 58.1 12.7 87 460-547 5-92 (104)
450 1pc2_A Mitochondria fission pr 97.2 0.0012 4E-08 64.9 9.7 92 80-171 13-107 (152)
451 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0079 2.7E-07 55.2 11.6 78 389-467 4-87 (104)
452 3qww_A SET and MYND domain-con 96.9 0.0051 1.7E-07 72.1 12.8 91 438-530 311-411 (433)
453 3qwp_A SET and MYND domain-con 96.6 0.023 7.7E-07 66.6 16.0 97 324-420 297-401 (429)
454 3qww_A SET and MYND domain-con 96.6 0.024 8.1E-07 66.4 16.1 92 329-420 313-412 (433)
455 3qwp_A SET and MYND domain-con 96.6 0.013 4.6E-07 68.5 13.8 92 437-530 299-400 (429)
456 2dhx_A Poly (ADP-ribose) polym 96.6 0.011 3.6E-07 53.1 9.6 73 1033-1114 8-85 (104)
457 1nzn_A CGI-135 protein, fissio 95.8 0.068 2.3E-06 50.4 11.5 99 371-470 16-118 (126)
458 3txn_A 26S proteasome regulato 95.5 0.31 1E-05 55.8 17.8 172 360-532 23-212 (394)
459 1wwh_A Nucleoporin 35, nucleop 94.8 0.082 2.8E-06 49.0 8.2 70 1032-1109 23-93 (119)
460 3txn_A 26S proteasome regulato 94.4 1.3 4.4E-05 50.6 18.9 175 314-491 19-212 (394)
461 3p3d_A Nucleoporin 53; structu 94.3 0.057 2E-06 50.8 5.9 76 1034-1111 8-97 (132)
462 3o48_A Mitochondria fission 1 93.8 0.48 1.6E-05 44.9 11.1 98 74-171 12-114 (134)
463 1whv_A Poly(A)-specific ribonu 93.7 0.18 6.2E-06 44.6 7.5 52 1034-1095 17-68 (100)
464 1nzn_A CGI-135 protein, fissio 93.5 0.23 7.8E-06 46.8 8.4 85 85-169 21-108 (126)
465 3hx8_A MLR2180 protein, putati 93.4 0.38 1.3E-05 45.1 10.2 110 725-836 9-124 (129)
466 1wey_A Calcipressin 1; structu 93.2 0.13 4.6E-06 46.3 6.0 73 1034-1113 6-84 (104)
467 4i4k_A Uncharacterized protein 93.0 0.46 1.6E-05 46.1 10.4 108 725-833 22-135 (143)
468 3mkq_A Coatomer beta'-subunit; 93.0 1.8 6.2E-05 54.4 18.9 131 360-528 633-763 (814)
469 3o48_A Mitochondria fission 1 93.0 0.89 3E-05 43.0 11.5 93 376-470 27-122 (134)
470 3ffl_A Anaphase-promoting comp 92.9 0.78 2.7E-05 45.2 11.5 113 360-485 24-147 (167)
471 3ctr_A Poly(A)-specific ribonu 92.8 0.11 3.6E-06 46.3 4.6 52 1034-1095 7-58 (101)
472 3mkq_B Coatomer subunit alpha; 92.5 3.7 0.00013 41.0 16.1 99 366-484 15-113 (177)
473 1y8m_A FIS1; mitochondria, unk 92.2 1.2 4.1E-05 42.7 11.4 98 74-171 11-113 (144)
474 1uw4_A UPF3X; nonsense mediate 92.1 0.64 2.2E-05 41.1 8.8 68 1034-1102 2-72 (91)
475 3pq1_A Poly(A) RNA polymerase; 91.7 0.079 2.7E-06 61.5 3.2 64 1032-1102 52-115 (464)
476 3gzr_A Uncharacterized protein 91.1 1.6 5.6E-05 42.3 11.7 115 725-839 9-131 (146)
477 4gns_B Protein CSD3, chitin bi 91.1 1.1 3.8E-05 55.4 12.8 124 362-486 254-397 (754)
478 1y8m_A FIS1; mitochondria, unk 90.9 1.5 5.2E-05 42.0 10.6 82 387-469 36-120 (144)
479 3mkq_B Coatomer subunit alpha; 90.5 5.6 0.00019 39.8 14.9 110 97-233 6-115 (177)
480 3mkq_A Coatomer beta'-subunit; 90.4 2.5 8.6E-05 53.0 15.9 47 323-382 661-707 (814)
481 4gns_B Protein CSD3, chitin bi 90.4 1.5 5.1E-05 54.4 13.0 119 324-451 258-397 (754)
482 3d9r_A Ketosteroid isomerase-l 90.4 0.86 2.9E-05 43.0 8.9 110 724-838 13-133 (135)
483 3ffl_A Anaphase-promoting comp 90.4 2.9 0.0001 41.2 12.4 57 394-451 24-89 (167)
484 4b4t_S RPN3, 26S proteasome re 89.3 1.8 6.1E-05 50.8 11.8 169 424-613 180-373 (523)
485 3cu3_A Domain of unknown funct 89.0 1.3 4.3E-05 44.3 9.1 113 724-836 18-136 (172)
486 3gwr_A Putative calcium/calmod 87.4 2.2 7.5E-05 41.3 9.4 111 725-836 11-126 (144)
487 4b4t_P 26S proteasome regulato 87.1 50 0.0017 38.2 23.0 105 425-530 137-247 (445)
488 4b4t_R RPN7, 26S proteasome re 85.7 4.8 0.00016 46.7 12.8 97 356-452 131-235 (429)
489 4b4t_R RPN7, 26S proteasome re 84.0 3 0.0001 48.4 10.0 100 391-490 132-238 (429)
490 3h51_A Putative calcium/calmod 83.9 15 0.00051 35.5 13.7 113 722-840 20-142 (156)
491 2l08_A Regulator of nonsense t 83.2 2 6.8E-05 38.3 6.0 69 1033-1102 9-80 (97)
492 1zbp_A Hypothetical protein VP 83.0 15 0.00053 39.1 13.9 61 400-462 7-67 (273)
493 3spa_A Mtrpol, DNA-directed RN 81.7 9.9 0.00034 48.3 13.6 95 357-451 128-227 (1134)
494 2ff4_A Probable regulatory pro 81.6 3.8 0.00013 46.8 9.5 57 362-418 177-233 (388)
495 3spa_A Mtrpol, DNA-directed RN 80.6 7.7 0.00026 49.2 12.1 98 391-489 128-230 (1134)
496 3b7c_A Uncharacterized protein 79.1 9.1 0.00031 35.4 9.7 103 726-834 9-119 (122)
497 2ff4_A Probable regulatory pro 78.3 5.5 0.00019 45.5 9.4 83 115-198 129-233 (388)
498 4b4t_S RPN3, 26S proteasome re 77.8 22 0.00077 41.6 14.2 104 387-493 178-303 (523)
499 3fka_A Uncharacterized NTF-2 l 76.8 11 0.00038 34.9 9.4 101 726-837 13-119 (120)
500 3kae_A CDC27, possible protein 76.1 53 0.0018 32.3 13.7 104 424-534 32-147 (242)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=1.1e-50 Score=503.23 Aligned_cols=483 Identities=14% Similarity=0.200 Sum_probs=397.4
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHHHHH
Q 001060 82 SGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS---MDKVVEVY 158 (1169)
Q Consensus 82 ~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~---~e~A~~l~ 158 (1169)
...+..|++.|..||.|++.|..|++.+++. +.++.+|.+|+++|..||.+..+|++|+++|++.++ +++++++|
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3678899999999999999999999999874 599999999999999999999999999999999999 99999999
Q ss_pred HHHHhccC--CCHHHHHHHHHHHHhhcCC-------HHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHH---------
Q 001060 159 ERAVQGVT--YSVDIWLHYCIFAINTYGD-------PETIRRLFERGLAYVGT-DYLSFPLWDKYIEYEYM--------- 219 (1169)
Q Consensus 159 eraL~~~P--~s~~lw~~y~~~~~~~~~~-------~e~Ar~~~erAl~~~g~-d~~s~~lw~~y~~~e~~--------- 219 (1169)
+|||..+| .+++||..|+.|.....+. .+.+|++|++||..+|. |+.+..||..|++|+..
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 99999994 7999999999999843322 25677999999999999 99999999999999873
Q ss_pred hhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCcccccc
Q 001060 220 QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQT 299 (1169)
Q Consensus 220 ~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~ 299 (1169)
++++++++.||+|+|.+|..+++.+|..|..|+...+ .. +.
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~--~~-~a------------------------------------ 247 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN--QL-TA------------------------------------ 247 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC--TT-TH------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC--cc-hH------------------------------------
Confidence 5678999999999999999999999999999854321 00 00
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc------------CCCChhcHHHHHHHHHHHH
Q 001060 300 SKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHV------------KPLSVTELENWHNYLDFIE 367 (1169)
Q Consensus 300 ~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v------------~pl~~~~~~~W~~yl~~~~ 367 (1169)
++++..+...|..+......+..+.+.|.|.+.+. .+.+..++.+|..|++|++
T Consensus 248 --------------~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk 313 (679)
T 4e6h_A 248 --------------RRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWES 313 (679)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHH
Confidence 01111111122222222222333445666654432 1134577899999999988
Q ss_pred HcC-------ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHHhhccChHHHHHHHHHHHHcC
Q 001060 368 RDG-------DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAH-NALARATHVFVKRLPEIHLFAARFKEQNG 439 (1169)
Q Consensus 368 ~~g-------d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~-~vl~rAl~~~~p~~~~l~~~~a~~~e~~g 439 (1169)
..+ ..++++.+|++||..||+++++|+.|+.++...|+.++|+ .+|+||+..+ |.+..+|+.++.++++.|
T Consensus 314 ~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~ 392 (679)
T 4e6h_A 314 DNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNT 392 (679)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhC
Confidence 754 2467889999999999999999999999999999999996 9999999876 889999999999999999
Q ss_pred CHHHHHHHHHHHhhhc----------CCC-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001060 440 DIDGARAAYQLVHTET----------SPG-----------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 498 (1169)
Q Consensus 440 ~~~~A~~~~~~a~~~~----------~P~-----------~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~ 498 (1169)
++++|+.+|++++..+ .|. ...+|+.++.+++|.|+++.|+.+|.+|++..+. .
T Consensus 393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-----~ 467 (679)
T 4e6h_A 393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-----V 467 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-----S
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----C
Confidence 9999999999984321 253 4568999999999999999999999999987321 1
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHH
Q 001060 499 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAA 578 (1169)
Q Consensus 499 ~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~ 578 (1169)
.+.+|+.++.++++..++.+.||+||+++|+.+|++..+|..|+.|+...++ ++.+|.+|++++...++ ++
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~---~~~AR~lferal~~~~~------~~ 538 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE---ESQVKSLFESSIDKISD------SH 538 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHTTTSSS------TT
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcCC------HH
Confidence 2568999999998855669999999999999999999999999999999887 67899999999997653 34
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCC
Q 001060 579 EREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAP 644 (1169)
Q Consensus 579 ~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~ 644 (1169)
++..||..|++||..+|+++++.+|++|+.+++|.. .+ ....++||++.+..+|..
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~------~~----~~~f~~ry~~~~~~~i~~ 594 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV------NK----LEEFTNKYKVLDVNYLQR 594 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC------CH----HHHHHHHTCBTTBCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------cH----HHHHHHHhcCCcchhHHH
Confidence 678999999999999999999999999999999964 11 233468888887766543
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=2.5e-48 Score=477.48 Aligned_cols=480 Identities=21% Similarity=0.356 Sum_probs=399.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 88 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 88 l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
|+++|+.||.|+++|..++.+ .. .+++++|+.+|+++|..+|.+..+|+.|+.++.+.|++++|+++|+|||..+|
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~--~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p- 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQ--NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL- 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HH--SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HH--hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Confidence 688999999999999999996 43 46999999999999999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHhhcCCHHHHHH----HHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHHHHHHHHHHHH
Q 001060 168 SVDIWLHYCIFAINTYGDPETIRR----LFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRIL 234 (1169)
Q Consensus 168 s~~lw~~y~~~~~~~~~~~e~Ar~----~~erAl~~~g~d~~s~~lw~~y~~~e~~---------~~~~~~a~~iY~r~L 234 (1169)
++++|+.|+.++.+..++.+.|++ +|++++..+|.++.+..+|..|+.|+.. ++++++|+.+|+++|
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 899999999998877787766654 9999999999999999999999999987 789999999999999
Q ss_pred hcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 235 ENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 235 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
++|..+...+|..|..|+..... . .+ .
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~--~----~~-----------------------------------------------~ 184 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI--H----LA-----------------------------------------------K 184 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH--H----HH-----------------------------------------------H
T ss_pred hchhhhHHHHHHHHHHHHHhhch--h----HH-----------------------------------------------H
Confidence 99888888999888877432110 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC----hhcHHHHHHHHHHHHHc----CCh----HHHHHHHHHH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS----VTELENWHNYLDFIERD----GDF----NKVVKLYERC 382 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~----~~~~~~W~~yl~~~~~~----gd~----~~a~~lyera 382 (1169)
+++..+...|......-..+..+.+++++.+.++.|.. ..+..+|..|+.|++.. ++. .+++.+|++|
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 01100111111111111222233447776555555432 35578999999998764 233 4889999999
Q ss_pred HHhccCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 383 LIACANYPEYWIRYVLCMEA-------SGSMD-------LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 448 (1169)
Q Consensus 383 L~~~~~~~e~W~~~a~~l~~-------~g~~e-------~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 448 (1169)
|..+|.++++|+.|+.++.. .|+++ +|+.+|++|++...|++..+|+.++.++++.|++++|+.+|
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999986 68887 89999999997334899999999999999999999999999
Q ss_pred HHHhhhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001060 449 QLVHTETSPGLL-EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 527 (1169)
Q Consensus 449 ~~a~~~~~P~~~-~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kA 527 (1169)
+++ +++.|.+. .+|+.++.++.+.|++++|+.+|++|++..+. ...+|...+.+++...|++++|+++|+++
T Consensus 345 ~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 345 NRL-LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHH-HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHH-hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------chHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 998 78899875 69999999999999999999999999998653 24466666666655689999999999999
Q ss_pred hhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 001060 528 LDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH 607 (1169)
Q Consensus 528 l~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~ 607 (1169)
|+.+|++..+|..|+.++...|+ .+.++.+|++++...+.+ ++.+..+|..|++||..+||.+++.++.+|+
T Consensus 418 l~~~p~~~~~~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~~-----~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 418 LKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGSLP-----PEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHSCCSC-----GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHhCCC---HhhHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999887 677999999999986543 3566789999999999999999999999999
Q ss_pred HhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCCCC
Q 001060 608 ARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPSP 646 (1169)
Q Consensus 608 ~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~~~ 646 (1169)
.+.+|. +.+++ ++...+||||+++++||+++.
T Consensus 490 ~~~~p~-----~~~~~--~~~~~~~r~~~~~~~~~~~~~ 521 (530)
T 2ooe_A 490 FTAFRE-----EYEGK--ETALLVDRYKFMDLYPCSASE 521 (530)
T ss_dssp HHHTHH-----HHTTC--HHHHHGGGTCBTTBCSSCHHH
T ss_pred HHHCch-----hccCc--hHHHHHHHHHhcccCCCCHHH
Confidence 999984 34444 467889999999999999864
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=100.00 E-value=3.8e-38 Score=381.06 Aligned_cols=429 Identities=14% Similarity=0.132 Sum_probs=327.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 195 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~er 195 (1169)
+++.||.+|++++..||. +++++|+.+|+|||..+| |++||..|++|........+.++.+|++
T Consensus 10 ~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp --CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred chHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 599999999999999998 789999999999999987 9999999999999544456789999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHH----HhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHH
Q 001060 196 GLAYVGTDYLSFPLWDKYIEYEY----MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 271 (1169)
Q Consensus 196 Al~~~g~d~~s~~lw~~y~~~e~----~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~ 271 (1169)
|+..+|.|+.+..||..|++|+. .++++++++++|+|+|.+|+.+.+.+|..|..|+...+.. +
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~---~--------- 141 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKI---T--------- 141 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHH---H---------
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccc---c---------
Confidence 99999999999999999999976 4678999999999999999999999999999885432100 0
Q ss_pred HHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCC
Q 001060 272 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 351 (1169)
Q Consensus 272 ~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl 351 (1169)
..+++.. ...++..++..|+.+... .
T Consensus 142 -----------------------------------------~~~~~~~------~~~~y~~ar~~y~~~~~~-------~ 167 (493)
T 2uy1_A 142 -----------------------------------------GKKIVGD------TLPIFQSSFQRYQQIQPL-------I 167 (493)
T ss_dssp -----------------------------------------HHHHHHH------HHHHHHHHHHHHHHHHHH-------H
T ss_pred -----------------------------------------HHHHHHH------HhHHHHHHHHHHHHHHHH-------H
Confidence 0011111 112344444445544431 0
Q ss_pred ChhcHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC
Q 001060 352 SVTELENWHNYLDFIERDGD-------FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL 424 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd-------~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~ 424 (1169)
...++.+|..|++|++..+. .+++..+|++||..+|+++++|+.|+.++...|+.+.|+.+|+||+.. |.+
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 11246799999999875421 467899999999999999999999999999999999999999999997 788
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHh-hh-------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVH-TE-------TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 496 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~-~~-------~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~ 496 (1169)
..+|+.++.+++. ++. -..++++.. .+ ..+....+|+.|+.++.+.+++++|+.+|++| . .+.
T Consensus 246 ~~l~~~y~~~~e~-~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---- 316 (493)
T 2uy1_A 246 MFLSLYYGLVMDE-EAV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG---- 316 (493)
T ss_dssp SHHHHHHHHHTTC-THH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC----
T ss_pred HHHHHHHHhhcch-hHH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC----
Confidence 8999999887431 111 112222210 00 11223478999999999999999999999999 3 321
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCC
Q 001060 497 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTAN 576 (1169)
Q Consensus 497 ~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~ 576 (1169)
....+|+.++.+++...++.+.||.+|+++++..|+++.+|..|+.||..+++ .+.+|.+|+++..
T Consensus 317 -~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~---~~~aR~l~er~~k---------- 382 (493)
T 2uy1_A 317 -VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD---EENARALFKRLEK---------- 382 (493)
T ss_dssp -CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHSCC----------
T ss_pred -CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH----------
Confidence 13569999999999866679999999999999999999999999999999887 6779999999832
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC----CC-Cc----hhhhhcchhhhhcchHHHhhhcCCCCCC-C
Q 001060 577 AAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP----HR-ST----SELRKRHAEDFLASERAKMAKSYSGAPS-P 646 (1169)
Q Consensus 577 ~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~----~~-~~----~~~~kr~~~~~~~~~~~k~~~~~~~~~~-~ 646 (1169)
+..+|..|++||..+||.++++++++|..+.+.. .+ +. ...++-.-.-...++||.++++.||+++ .
T Consensus 383 ---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~~~~~~~~~~ 459 (493)
T 2uy1_A 383 ---TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRDNSRL 459 (493)
T ss_dssp ---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTTBCCCCTTCC
T ss_pred ---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhccccCCccch
Confidence 2479999999999999999999999999887752 11 10 1111110011235789999999999976 5
Q ss_pred ccccccCC
Q 001060 647 AQSLMGAY 654 (1169)
Q Consensus 647 ~~~~~~~~ 654 (1169)
.+.-+...
T Consensus 460 ~~~~~~~~ 467 (493)
T 2uy1_A 460 LDEFMENL 467 (493)
T ss_dssp CTTTTC--
T ss_pred HHHHHHhc
Confidence 56666543
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=3.2e-30 Score=319.97 Aligned_cols=437 Identities=12% Similarity=0.137 Sum_probs=325.2
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCH---
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDN---IVKIRRVYDAFLAEFP--LCYGYWKKYADHEARVGSM--- 151 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~---i~~Ar~~ye~~l~~~P--~~~~~W~~~a~~e~~~~~~--- 151 (1169)
.+...-..++++|...|.....|..++.+..+. ++ +++++.+|+++|...| .+..+|..|+.+..+.++.
T Consensus 81 ~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~--~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~ 158 (679)
T 4e6h_A 81 QWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK--MEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITG 158 (679)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC----CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTT
T ss_pred cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccc
Confidence 456677789999999999999999999997764 57 9999999999999994 6889999999999887764
Q ss_pred -----HHHHHHHHHHHhc----cCCCHHHHHHHHHHHHh--------hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001060 152 -----DKVVEVYERAVQG----VTYSVDIWLHYCIFAIN--------TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYI 214 (1169)
Q Consensus 152 -----e~A~~l~eraL~~----~P~s~~lw~~y~~~~~~--------~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~ 214 (1169)
+.++++|+++|.. ++.+..+|..|+.|+.. ..++.+.+|.+|+++|. +|.+ ....+|..|.
T Consensus 159 ~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~~-~~~~~w~~Y~ 236 (679)
T 4e6h_A 159 GEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMD-CLESMWQRYT 236 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCCS-SHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh-CccH-HHHHHHHHHH
Confidence 5577999999975 45688999999999872 12357889999999996 5554 2468999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcchhhHH---HHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhcccccc
Q 001060 215 EYEYMQQEWSRVAMIYTRILENPIQQLD---RYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEV 291 (1169)
Q Consensus 215 ~~e~~~~~~~~a~~iY~r~L~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~ 291 (1169)
.|+...+... ++++..... ..+. ..+.....+... +..... ........ ..
T Consensus 237 ~fe~~~~~~~-a~~~~~e~~----~~y~~Ar~~~~e~~~~~~~--l~r~~p------------~~~~~~~~--~~----- 290 (679)
T 4e6h_A 237 QWEQDVNQLT-ARRHIGELS----AQYMNARSLYQDWLNITKG--LKRNLP------------ITLNQATE--SN----- 290 (679)
T ss_dssp HHHHHHCTTT-HHHHHHHHH----HHHHHHHHHHHHHHHHTTT--CCCCCC------------SSSTTCCT--TT-----
T ss_pred HHHHhcCcch-HHHHHHHhh----HHHHHHHHHHHHHHHHHHh--Hhhccc------------cccccchh--cc-----
Confidence 9998753321 222221110 1111 222223222211 111000 00000000 00
Q ss_pred CCccccccCCccccCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHH
Q 001060 292 QPDATEQTSKPVSAGLTEAEELEKYIAVREEMY---KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER 368 (1169)
Q Consensus 292 ~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y---~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~ 368 (1169)
.+............|.+|+......- .........+..|+++|. ..|...++|..|+.|++.
T Consensus 291 -------~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~--------~~p~~~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 291 -------LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ--------HVCFAPEIWFNMANYQGE 355 (679)
T ss_dssp -------SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH--------HTTTCHHHHHHHHHHHHH
T ss_pred -------CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHh
Confidence 00000011122345666654321100 000112344567999998 567778999999999999
Q ss_pred cCChHHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh----------c-----------cChH
Q 001060 369 DGDFNKVV-KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV----------K-----------RLPE 426 (1169)
Q Consensus 369 ~gd~~~a~-~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~----------p-----------~~~~ 426 (1169)
.|+.++|+ .+|++++..||.+..+|+.|+.+++..|+++.|+.+|++++.... | ....
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 99999996 999999999999999999999999999999999999999998641 2 2456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhc-CCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTET-SPGLLEAIIKHANMERRLGN-LEDAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~-~P~~~~~~~~~a~~e~r~g~-~e~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
+|+.+++++.+.|+++.||++|.++ ++. .+....+|+.++.+|.+.++ .+.|+.+|+++++..+. .+.+|.
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A-~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~------~~~~w~ 508 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKC-RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT------DGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT------CHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------chHHHH
Confidence 9999999999999999999999999 454 44457899999999988865 89999999999999863 377999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhcC---CCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 505 QYSRFLHLVSRNAEKARQILVDSLDHVQ---LSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 505 ~~a~~~~~~~g~~e~Ar~i~~kAl~~~p---~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.|++|+.. .|+.+.||.+|++|++..| ....+|..|+.||..+|+. +.++++++|++...|+++
T Consensus 509 ~y~~fe~~-~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~---~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 509 KYLDFLIY-VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL---NSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHH-HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCc
Confidence 99999988 8999999999999999998 4679999999999999984 558999999999988765
No 5
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=2.4e-30 Score=317.41 Aligned_cols=415 Identities=16% Similarity=0.245 Sum_probs=317.1
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHH-
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA-RVGSMDKVVE- 156 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~-~~~~~e~A~~- 156 (1169)
+.+..+...|+++|+.+|.+...|..++.++.+. +++++|+.+|+++|..+| +..+|+.|+.+.. ..++++.|++
T Consensus 26 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 26 QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA--KNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHH
Confidence 3467889999999999999999999999998874 599999999999999999 6889999998765 4577776655
Q ss_pred ---HHHHHHhc---cCCCHHHHHHHHHHHHh--------hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhh
Q 001060 157 ---VYERAVQG---VTYSVDIWLHYCIFAIN--------TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE 222 (1169)
Q Consensus 157 ---l~eraL~~---~P~s~~lw~~y~~~~~~--------~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~ 222 (1169)
+|++++.. +|.+..+|..|+.|+.. ..++.+.|+.+|+++|+ ++.+ ....+|..|..|+...+.
T Consensus 103 ~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~-~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 103 MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMI-NIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCT-THHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhh-hHHHHHHHHHHHHHhhch
Confidence 99999875 45789999999999873 15789999999999998 5432 235899999999865543
Q ss_pred -------------HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhcccc
Q 001060 223 -------------WSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEE 289 (1169)
Q Consensus 223 -------------~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~ 289 (1169)
+..|+.+|... ..+... +... ..
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~---------------~~~~~~-------------------l~~~---~~------- 216 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEY---------------ETVMKG-------------------LDRN---AP------- 216 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHH---------------HHHHHH-------------------CCSS---SC-------
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHH---------------HHHHHH-------------------hccc---cc-------
Confidence 33333333321 111000 0000 00
Q ss_pred ccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHH
Q 001060 290 EVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK----EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 365 (1169)
Q Consensus 290 ~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~----~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~ 365 (1169)
.+.| ............|..++..........+ ....++..|+++|. .+|...++|..|+.+
T Consensus 217 ~~~p-------~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~--------~~p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 217 SVPP-------QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL--------VLGHHPDIWYEAAQY 281 (530)
T ss_dssp CCCC-------C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHH
T ss_pred cCCC-------CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH--------hCCCCHHHHHHHHHH
Confidence 0000 0000000011223333211100000000 12355678999998 577889999999999
Q ss_pred HHH-------cCChH-------HHHHHHHHHHH-hccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh-HHHH
Q 001060 366 IER-------DGDFN-------KVVKLYERCLI-ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-EIHL 429 (1169)
Q Consensus 366 ~~~-------~gd~~-------~a~~lyeraL~-~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~-~l~~ 429 (1169)
+.+ .|+++ +|+.+|++++. .+|.+..+|+.++.++...|++++|+.+|++++++. |.++ .+|+
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 360 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYI 360 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHH
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHH
Confidence 876 68987 99999999997 799999999999999999999999999999999976 6664 6999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 508 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~-r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~ 508 (1169)
.++.++.+.|++++|+.+|+++ ++..|....+|+..+.++. ..|++++|+.+|+++++..|. .+.+|..|+.
T Consensus 361 ~~~~~~~~~~~~~~A~~~~~~A-l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~------~~~~~~~~~~ 433 (530)
T 2ooe_A 361 QYMKFARRAEGIKSGRMIFKKA-REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT------CHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC------CHHHHHHHHH
Confidence 9999999999999999999999 7778888888887777753 589999999999999999863 3789999999
Q ss_pred HHHHHhCCHHHHHHHHHHHhhhcCCCH----HHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001060 509 FLHLVSRNAEKARQILVDSLDHVQLSK----PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 569 (1169)
Q Consensus 509 ~~~~~~g~~e~Ar~i~~kAl~~~p~s~----~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~ 569 (1169)
++.. .|++++||.+|+++++..|.++ .+|..|+.||..+|+ .+.+.+++.+++...|
T Consensus 434 ~~~~-~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~---~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 434 YLSH-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEKRRFTAFR 494 (530)
T ss_dssp HHTT-TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHTH
T ss_pred HHHh-CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCc
Confidence 9887 9999999999999999876654 599999999999998 4557888888887655
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.8e-29 Score=292.33 Aligned_cols=374 Identities=14% Similarity=0.153 Sum_probs=336.4
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+.++.+++.+.++++.+|.+...|..++.++... +++++|..++++++..+|.+...|..++..+.+.|++++|+++|
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3477899999999999999999999999998874 69999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 238 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~ 238 (1169)
++++...|.+.+.|..++..+. ..|++++|+..|+++++..+ ....+|..+.......|++++|..+|++++...+
T Consensus 91 ~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 166 (388)
T 1w3b_A 91 RHALRLKPDFIDGYINLAAALV-AAGDMEGAVQAYVSALQYNP---DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHHCT---TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999888 78999999999999999544 4677899999999999999999999999987644
Q ss_pred hhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHH
Q 001060 239 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 318 (1169)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~ 318 (1169)
.+...++
T Consensus 167 ~~~~~~~------------------------------------------------------------------------- 173 (388)
T 1w3b_A 167 NFAVAWS------------------------------------------------------------------------- 173 (388)
T ss_dssp TCHHHHH-------------------------------------------------------------------------
T ss_pred CCHHHHH-------------------------------------------------------------------------
Confidence 4322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
.+..+|...+++++++..|+++++ ++|.....|..++..+...|++++++..|++++...|.+..+|..++.
T Consensus 174 ~l~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 174 NLGCVFNAQGEIWLAIHHFEKAVT--------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 123355667778889999999998 678889999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
++...|++++|+..|++++++. |+++.+|..++.++.+.|++++|+.+|+++ +++.|.+..+|..++.++.+.|++++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTA-LRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999987 889999999999999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhC
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 548 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~ 548 (1169)
|+.+|+++++..|+ .+.++..++..+.. .|++++|+..|+++++..|++...|..+......+
T Consensus 324 A~~~~~~al~~~p~------~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 324 AVRLYRKALEVFPE------FAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHTTSCTT------CHHHHHHHHHHHHT-TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCC------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence 99999999998753 36688889988776 99999999999999999999998887776655443
No 7
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=99.97 E-value=9.5e-32 Score=264.90 Aligned_cols=124 Identities=38% Similarity=0.666 Sum_probs=107.2
Q ss_pred CCcchhHhHHHHHHHHhhhhCcccccccccCCceEEEE----cCCcccchhhHHHHHHHHhcCCCcc--eeEeeeecccc
Q 001060 718 AYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRV----DGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGS 791 (1169)
Q Consensus 718 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~----~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~ 791 (1169)
..+.+||+.||+|||++|+++|+.||+||+++|++++. +|+......|.++|+++|++|||++ ++|.++|||++
T Consensus 7 p~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qps 86 (140)
T 3q90_A 7 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHAT 86 (140)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEEe
Confidence 35788999999999999999999999999998777653 4544456778899999999999975 57999999999
Q ss_pred CCCceEEEEEEEEEecCccccceeEEEEEEEeeC---CeEEEEcceEEeccCCC
Q 001060 792 WNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE---KGYFVLNDIFHFLDEEP 842 (1169)
Q Consensus 792 ~~~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nDifr~~~~~~ 842 (1169)
+++||||+|+|.|+.++. ++|+|+|||+|+|++ ++|||+||||||+|+.+
T Consensus 87 ~~~gilI~V~G~l~~~~~-~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~~ 139 (140)
T 3q90_A 87 LNDGVVVQVMGLLSNNNQ-ALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 139 (140)
T ss_dssp GGGCEEEEEEEEEECTTC-CCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC-
T ss_pred CCCCEEEEEEEEEecCCC-CccEEEEEEEEeecCCCCCCEEEEEEEeEeehhhc
Confidence 999999999999999885 799999999999996 89999999999999875
No 8
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=99.97 E-value=1.5e-31 Score=256.34 Aligned_cols=116 Identities=35% Similarity=0.611 Sum_probs=104.9
Q ss_pred CcchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcce--eEeeeeccccCCCce
Q 001060 719 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNGGV 796 (1169)
Q Consensus 719 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~--~i~~~d~q~~~~~~i 796 (1169)
.|.+||++||++||++|+++|+.|++||+++|+++|++|+.+. |.++|+++|++|||++| +|.++|||++.++||
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~~~~~---G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~~gi 78 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESKLVV---GQREIHNRIQQLNFNDCHAKISQVDAQATLGNGV 78 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTCCCEE---SHHHHHHHHHHHCCCSCEEEEEEEEEEEEGGGEE
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEEcCCcEec---CHHHHHHHHHcCCCcceEEEEecccceEcCCCCE
Confidence 5789999999999999999999999999999999998776554 55678999999999854 799999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEEeeC-CeEEEEcceEEec
Q 001060 797 LVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 838 (1169)
Q Consensus 797 lv~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nDifr~~ 838 (1169)
||+|+|.|+.++. +.|+|+|||+|+|++ ++|||+||||||+
T Consensus 79 li~V~G~l~~~~~-~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 79 VVQVTGELSNDGQ-PMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEEEESTTC-CCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCC-CCceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 9999999999886 789999999999996 8999999999995
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.4e-27 Score=279.93 Aligned_cols=369 Identities=12% Similarity=0.066 Sum_probs=328.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC
Q 001060 105 LLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG 184 (1169)
Q Consensus 105 L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~ 184 (1169)
++..+.. .|++++|+.+|++++..+|++..+|..++.++...+++++|+..+++++...|.+...|...+..+. ..|
T Consensus 5 ~a~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~-~~g 81 (388)
T 1w3b_A 5 LAHREYQ--AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERG 81 (388)
T ss_dssp HHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCC
Confidence 3444444 4699999999999999999999999999999999999999999999999999999999999999998 789
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHH
Q 001060 185 DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 264 (1169)
Q Consensus 185 ~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e 264 (1169)
++++|+..|++++...+ .....|...+......|+++.|..+|+++++..+.....
T Consensus 82 ~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------------------- 137 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP---DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV--------------------- 137 (388)
T ss_dssp CHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH---------------------
T ss_pred CHHHHHHHHHHHHHcCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---------------------
Confidence 99999999999999544 366788888888888999999999999998764332211
Q ss_pred HHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001060 265 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 344 (1169)
Q Consensus 265 ea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~ 344 (1169)
...+..+|...+++++|+..|+++++
T Consensus 138 ----------------------------------------------------~~~l~~~~~~~g~~~~A~~~~~~al~-- 163 (388)
T 1w3b_A 138 ----------------------------------------------------RSDLGNLLKALGRLEEAKACYLKAIE-- 163 (388)
T ss_dssp ----------------------------------------------------HHHHHHHHHTTSCHHHHHHHHHHHHH--
T ss_pred ----------------------------------------------------HHHHHHHHHHccCHHHHHHHHHHHHH--
Confidence 11223456667788899999999998
Q ss_pred CcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC
Q 001060 345 YFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL 424 (1169)
Q Consensus 345 ~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~ 424 (1169)
++|.....|..++..+...|++++|+..|++++...|.+.+.|..++.++...|++++|+..|++++.+. |++
T Consensus 164 ------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 164 ------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp ------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred ------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 6788889999999999999999999999999999999999999999999999999999999999999987 889
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
..+|..++.++...|++++|+..|+++ +++.|++..+|..++.++.+.|++++|+.+|++++...|. .+.+|.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 309 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRA-IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLN 309 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHHHH
Confidence 999999999999999999999999998 7889999999999999999999999999999999999753 367888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 505 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 505 ~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.++.++.. .|++++|+.+|+++++..|++...+..++......+. .+.+..+|++++...|+..
T Consensus 310 ~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 310 NLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCH
Confidence 88888776 9999999999999999999999999999988888877 5668999999999876543
No 10
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.96 E-value=2.9e-28 Score=294.51 Aligned_cols=405 Identities=14% Similarity=0.145 Sum_probs=298.9
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-MDKVVEVY 158 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-~e~A~~l~ 158 (1169)
.+..+-..|+++|...|. +++++++.+|+++|...| +.++|+.|+.++.+.+. .+.++.+|
T Consensus 10 ~i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp --CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHH
T ss_pred chHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 367788888888888887 379999999999999999 88999999999999984 57799999
Q ss_pred HHHHhc---cCCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhh----------
Q 001060 159 ERAVQG---VTYSVDIWLHYCIFAIN---TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE---------- 222 (1169)
Q Consensus 159 eraL~~---~P~s~~lw~~y~~~~~~---~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~---------- 222 (1169)
+++|.. ++.+.++|..|++|+.+ ..++.+.+|.+|+|||. +|.. .-..+|..|..|+...+.
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMG-SLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCT-THHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-Chhh-hHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999986 46899999999999762 23568899999999998 6643 236899999999977432
Q ss_pred ---HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCcccccc
Q 001060 223 ---WSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQT 299 (1169)
Q Consensus 223 ---~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~ 299 (1169)
+..|+.+|+.++......-..+|..|..|+..+++. + +
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~-~------------------------------------~-- 190 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK-L------------------------------------G-- 190 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC-C------------------------------------C--
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc-C------------------------------------c--
Confidence 333455555444321110012444444443221100 0 0
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHH
Q 001060 300 SKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 379 (1169)
Q Consensus 300 ~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~ly 379 (1169)
...........|+++|. ..|....+|..|+.|+.+.|+.++|+.+|
T Consensus 191 --------------------------~~~~~~Rv~~~ye~al~--------~~p~~~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 191 --------------------------GRPHESRMHFIHNYILD--------SFYYAEEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHH--------HTTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------chhhHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00011223456888887 34555899999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--H------HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 380 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT--H------VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 380 eraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl--~------~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
+||+.. |.+..+|+.|+.+++. +. ....++++.+ . ...+....+|+.|+.++.+.++++.||.+|+++
T Consensus 237 erAi~~-P~~~~l~~~y~~~~e~-~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 237 ERGIEM-SDGMFLSLYYGLVMDE-EA--VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHHHH-CCSSHHHHHHHHHTTC-TH--HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHhC-CCcHHHHHHHHhhcch-hH--HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 999999 9999999999887431 11 1112222211 0 011234589999999999999999999999998
Q ss_pred hhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 452 HTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 452 ~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
. ..+....+|+.++.++.+.+ +.+.|+.+|++++...+. .+.+|..|++|+.. .|+.++||.+|+++.
T Consensus 313 -~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~------~~~~~~~yid~e~~-~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 313 -G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD------STLLKEEFFLFLLR-IGDEENARALFKRLE-- 381 (493)
T ss_dssp -T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-HTCHHHHHHHHHHSC--
T ss_pred -h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH--
Confidence 3 23346789999999999887 599999999999998753 36789999999887 999999999999983
Q ss_pred cCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC----CCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 001060 531 VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS----DSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAED 605 (1169)
Q Consensus 531 ~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~----~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~ 605 (1169)
.+..+|..|+.||..+|+ .+.+++++++++.... ++++ .+.+.|++||..+|+++++..-+.
T Consensus 382 --k~~~lw~~~~~fE~~~G~---~~~~r~v~~~~~~~~~~~~~~~~~--------~~~~~~~~fe~~~g~l~~~~~~~~ 447 (493)
T 2uy1_A 382 --KTSRMWDSMIEYEFMVGS---MELFRELVDQKMDAIKADAILPPL--------PPREHNVQMEGILGRYHCFLDSFN 447 (493)
T ss_dssp --CBHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHTTCCBCCC--------CCC--CCCCCHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhcccccCCcc--------cccccHHHHHHHhhhHHHHHHHhh
Confidence 578999999999999998 5667888888875322 3443 378999999999999988776663
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.7e-26 Score=286.49 Aligned_cols=455 Identities=10% Similarity=-0.005 Sum_probs=362.5
Q ss_pred HHhCC-CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH
Q 001060 92 VKANS-SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD 170 (1169)
Q Consensus 92 l~~nP-~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~ 170 (1169)
....| .+...|..++..+... |++++|+.+|++++...|++ ..|..++..+.+.|++++|+.+|++++.. |.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~ 151 (597)
T 2xpi_A 76 QNTDSLSREDYLRLWRHDALMQ--QQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSA 151 (597)
T ss_dssp ------CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHH
T ss_pred cccchHHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchh
Confidence 33344 5788899999988874 59999999999999999965 67888999999999999999999999875 67899
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhc-------------CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001060 171 IWLHYCIFAINTYGDPETIRRLFERGLAYV-------------GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP 237 (1169)
Q Consensus 171 lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~-------------g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p 237 (1169)
.|..++..+. ..|++++|+.+|++..... ........+|...+......|++++|+.+|+++++..
T Consensus 152 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 230 (597)
T 2xpi_A 152 CRYLAAFCLV-KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230 (597)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999888 7899999999999633211 0002246789999999999999999999999999875
Q ss_pred hhhHHHHHHH-------------------HHHHHh-------------cCCCccccCHHHHHHHHHHHhhCCCccchhhh
Q 001060 238 IQQLDRYFSS-------------------FKEFAA-------------SRPLSELRTAEEVDAAAVAVAAAPSETGAEVK 285 (1169)
Q Consensus 238 ~~~~~~~~~~-------------------~~~~~~-------------~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~ 285 (1169)
+.+...+... +..... ...+......+++.. ++....+.
T Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~----~~~~~~~~----- 301 (597)
T 2xpi_A 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED----YLSSINGL----- 301 (597)
T ss_dssp TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH----HHHTSTTG-----
T ss_pred chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH----HHHHhhcC-----
Confidence 4433332211 111000 000111111122211 11111000
Q ss_pred ccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHH
Q 001060 286 ANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 365 (1169)
Q Consensus 286 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~ 365 (1169)
..+.. .+..+...|...+++++|+..|+++++ .+|.+...|..++..
T Consensus 302 ---------------------~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 302 ---------------------EKSSD----LLLCKADTLFVRSRFIDVLAITTKILE--------IDPYNLDVYPLHLAS 348 (597)
T ss_dssp ---------------------GGCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCCTTHHHHHHH
T ss_pred ---------------------CchHH----HHHHHHHHHHHhcCHHHHHHHHHHHHH--------cCcccHHHHHHHHHH
Confidence 01111 334456788899999999999999997 466678889999999
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 445 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 445 (1169)
+.+.|++++++.+|++++...|.+..+|..++.++.+.|++++|+.+|++++++. |++..+|..++.++.+.|++++|+
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999977 788999999999999999999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILV 525 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~ 525 (1169)
.+|+++ ++..|++..+|..++.++.+.|++++|+.+|++++...+. .+.+|..++..+.+ .|++++|.++|+
T Consensus 428 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~g~~~~A~~~~~ 499 (597)
T 2xpi_A 428 SAYTTA-ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFN-KSDMQTAINHFQ 499 (597)
T ss_dssp HHHHHH-HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHH-HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 999998 7889999999999999999999999999999999998753 36788899998887 999999999999
Q ss_pred HHhhh------cCCC-HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHH
Q 001060 526 DSLDH------VQLS-KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQ 598 (1169)
Q Consensus 526 kAl~~------~p~s-~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~ 598 (1169)
++++. .|++ ...|..++......++ .+.+..+|++++...+++. .+|..........|+.+
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKM---YDAAIDALNQGLLLSTNDA---------NVHTAIALVYLHKKIPG 567 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSSCCH---------HHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHhCCHH
Confidence 99998 5554 6788888888888887 6778999999998877654 58889999999999999
Q ss_pred HHHHHHHHHHhhhCCC
Q 001060 599 LIKKAEDRHARLFLPH 614 (1169)
Q Consensus 599 ~i~~v~~R~~~~~~~~ 614 (1169)
.+.+++++..++.|..
T Consensus 568 ~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 568 LAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999999999988764
No 12
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=99.95 E-value=1.5e-28 Score=238.16 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=106.5
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCceE
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVL 797 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~il 797 (1169)
+.+||+.||++||++|+++|+.|++||+++| ++.|+|+.+ .|.++|.++|.+||+++ ++|.++|||++.++|||
T Consensus 7 ~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S-~ls~~g~~~---~G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~~~il 82 (127)
T 1gy6_A 7 WEQIGSSFIQHYYQLFDNDRTQLGAIYIDAS-CLTWEGQQF---QGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEE-EEEETTEEE---ESHHHHHHHHHHCSCSCEEEEEEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhhCCCc-EEEECCccc---cCHHHHHHHHHhCCCcceEEEEEEEEEEEeCCCcEE
Confidence 7889999999999999999999999999986 445788654 45677899999999974 57999999999999999
Q ss_pred EEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEeccCCC
Q 001060 798 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEEP 842 (1169)
Q Consensus 798 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~~~~ 842 (1169)
|+|+|.++.++. ++|+|+|||+|+|++++|||+||||||++..+
T Consensus 83 i~V~G~~~~~~~-~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~~~ 126 (127)
T 1gy6_A 83 SMVVGQLKADED-PIMGFHQMFLLKNINDAWVCTNDMFRLALHNF 126 (127)
T ss_dssp EEEEEEEEETTS-CCEEEEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred EEEEEEEEECCC-CcceEeEEEEEEEeCCEEEEEEEEEEEEcccc
Confidence 999999999886 79999999999999999999999999998753
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.9e-25 Score=266.52 Aligned_cols=373 Identities=12% Similarity=0.064 Sum_probs=298.3
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
.......+.+++..+|.+.+.|..++..+... |++++|+.+|++++..+|.+...|..++..+...|++++|+.+|++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAA--GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34556678889999999999999999998884 6999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSF---PLWDKYIEYEYMQQEWSRVAMIYTRILENP 237 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~---~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p 237 (1169)
++...|.+...|..++..+. ..|++++|+.+|++++...+. .. ..|..++.......
T Consensus 86 al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~---------------- 145 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPS---ENEEKEAQSQLIKSDEMQR---------------- 145 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHHHH----------------
Confidence 99999999999999999988 789999999999999984433 32 33333333111000
Q ss_pred hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHH
Q 001060 238 IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYI 317 (1169)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i 317 (1169)
.
T Consensus 146 -------------------------------------------------------------------------------~ 146 (450)
T 2y4t_A 146 -------------------------------------------------------------------------------L 146 (450)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
..+...|...+++++|+..|+++++ ++|.....|..++..+...|++++|+.+|++++...|.+..+|..++
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 218 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILE--------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0112345567788889999999988 57778899999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhhcCCChH----H
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFA------------ARFKEQNGDIDGARAAYQLVHTETSPGLL----E 461 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~------------a~~~e~~g~~~~A~~~~~~a~~~~~P~~~----~ 461 (1169)
.++...|++++|+.+|++++.+. |++..++..+ +.++...|++++|+.+|+++ +++.|++. .
T Consensus 219 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~~~ 296 (450)
T 2y4t_A 219 TLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV-MKTEPSIAEYTVR 296 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCSSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCcchHHHHH
Confidence 99999999999999999999987 7888888776 88899999999999999998 77899874 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHH
Q 001060 462 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 541 (1169)
Q Consensus 462 ~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~ 541 (1169)
+|..++.++.+.|++++|+.+|++++...|. .+.+|..++.++.. .|++++|+..|+++++..|++..++..+
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPD------NVNALKDRAEAYLI-EEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 7889999999999999999999999998753 36789999999877 9999999999999999999999888877
Q ss_pred HHhHh------------hCCCh--hHHHHHHHHHHH-HhhcCCCC
Q 001060 542 IHFES------------IQSSP--KQIDFLEQLVDK-FLMSNSDS 571 (1169)
Q Consensus 542 a~~E~------------~~~~~--~~~~~~r~l~er-al~~~~~~ 571 (1169)
..+.. .++.. ...+.+++.|.+ ++...|+.
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 64322 22211 112445666665 56666554
No 14
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=99.95 E-value=1.5e-28 Score=238.56 Aligned_cols=116 Identities=30% Similarity=0.473 Sum_probs=104.4
Q ss_pred CcchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCce
Q 001060 719 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGV 796 (1169)
Q Consensus 719 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~i 796 (1169)
.+.+||+.||++||++|+++|+.|++||+++| ++.|+|+.+ .|.++|.++|.+||+++ ++|.++|||++.+|||
T Consensus 10 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S-~ls~~g~~~---~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~gi 85 (129)
T 1zo2_A 10 QFDQIGKQFVQHYYQTFQTNRPALGGLYGPQS-MLTWEDTQF---QGQANIVNKFNSLNFQRVQFEITRVDCQPSPNNGS 85 (129)
T ss_dssp THHHHHHHHHHHHHHHHHHCGGGGGGGEEEEE-EEEETTEEE---ESHHHHHHHHHHHCCSCEEEEEEEEEEEECTBSSE
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCc-EEEECCcee---ccHHHHHHHHHhCCCcceEEEEEEEEEEEeCCCcE
Confidence 47899999999999999999999999999985 445798654 45677899999999976 5799999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEEeeC-CeEEEEcceEEecc
Q 001060 797 LVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFLD 839 (1169)
Q Consensus 797 lv~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nDifr~~~ 839 (1169)
||+|+|.|+.+++ ++|+|+|||+|+|++ ++|||+||||||++
T Consensus 86 lI~V~G~~~~~~~-~~~~F~qtF~L~p~~~~~y~I~nD~fR~~~ 128 (129)
T 1zo2_A 86 IVFVTGDVRIDDG-QPLKFSQVFNLMPSGNGGFMIFNDLFRLNL 128 (129)
T ss_dssp EEEEEEEEEETTC-CCEEEEEEEEEEECSSSCEEEEEEEEEEC-
T ss_pred EEEEEEEEEECCC-CcceEEEEEEEEEcCCCcEEEEeEEEEEec
Confidence 9999999999886 799999999999998 89999999999986
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=3.3e-25 Score=270.68 Aligned_cols=240 Identities=12% Similarity=0.056 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
..++.+|...+++++++..|+++++ ++|. ...|..++..+...|++++|+..|++++..+|.+..+|..++
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~--------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESIN--------LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHh--------cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 3445677888899999999999998 5565 788999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 477 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e 477 (1169)
.++...|++++|+..|++++++. |++..+|+.++.++...|++++|+.+|+++ +++.|++..+|..++.++...|+++
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET-KLKFPTLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999987 888999999999999999999999999998 7889999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 478 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS----------RNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 478 ~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~----------g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
+|+.+|++++...+...........+...+.++.. . |++++|+.+|+++++..|++...+..++.+...
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR-QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH-HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH-HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999987543322222234555666555 6 999999999999999999999999999999988
Q ss_pred CCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 548 QSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 548 ~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.++ .+.+..+|++++...++..
T Consensus 475 ~g~---~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 475 MEK---IDEAIELFEDSAILARTMD 496 (537)
T ss_dssp TTC---HHHHHHHHHHHHHHC--CH
T ss_pred hcc---HHHHHHHHHHHHHhCCCcH
Confidence 887 6678999999999877654
No 16
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.95 E-value=1.8e-28 Score=243.18 Aligned_cols=115 Identities=23% Similarity=0.421 Sum_probs=104.7
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccC-------
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW------- 792 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~------- 792 (1169)
+.+||+.||++||++|+++|+.|++||.++|.| .|+|+.+ .|.++|.++|++||+..++|.++|||++.
T Consensus 33 a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~l-s~~g~~~---~G~~~I~~~l~~Lp~~~h~I~s~D~qp~~~~~~~q~ 108 (154)
T 3nv0_B 33 LCNESKKFMDVYYDVMDRKREKIGFLYTQVSNA-VWNGNPI---NGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDM 108 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEE-EETTEEE---ESHHHHHHHHHHSCCEEEEEEEEEEEECCTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEE-EECCeec---ccHHHHHHHHHhCCCeEEEEEEEEEEEcCccccCCC
Confidence 457999999999999999999999999997655 5898755 45677899999999988899999999998
Q ss_pred CCceEEEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEecc
Q 001060 793 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 839 (1169)
Q Consensus 793 ~~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~ 839 (1169)
++||||+|+|.|+.++. ++|+|+|||+|+|++++|||+||||||+|
T Consensus 109 ~~~ilI~V~G~l~~~~~-~~r~F~QtFvL~p~~~~y~V~NDifR~vd 154 (154)
T 3nv0_B 109 SGGMLLNVAGAVTVDGD-SKRAFTQTLLLGVEDGKYKVKSDRFRYVD 154 (154)
T ss_dssp TTCEEEEEEEEEEETTS-CCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred CCeEEEEEEEEEEECCC-CceeEEEEEEEEEeCCEEEEEeeEEEecC
Confidence 67999999999999886 78999999999999999999999999986
No 17
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=99.95 E-value=2e-28 Score=236.48 Aligned_cols=117 Identities=26% Similarity=0.460 Sum_probs=104.2
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcce--eEeeeeccccC-CCce
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSW-NGGV 796 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~--~i~~~d~q~~~-~~~i 796 (1169)
+.+||+.||++||++|+++|+.|++||+++|. +.|+|+.+. |.++|.++|.+|||++| +|.++|||++. +|||
T Consensus 5 ~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~-~s~~g~~~~---G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~~gi 80 (125)
T 1gy7_A 5 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESM-LTFETSQLQ---GAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDV 80 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEE-EEETTEEEE---SHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTSCE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcE-EEECCcEec---CHHHHHHHHHhCCCcceEEEEEEEEEEEecCCCeE
Confidence 67899999999999999999999999999754 457886544 56778999999999764 79999999985 5899
Q ss_pred EEEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEeccC
Q 001060 797 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDE 840 (1169)
Q Consensus 797 lv~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~~ 840 (1169)
||+|+|.++.+++.++|+|+|||+|+|++++|||+||||||++.
T Consensus 81 li~V~G~~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 81 LVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124 (125)
T ss_dssp EEEEEEEEEETTCSSCEEEEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEEEEEECCCCCCccEeEEEEEEEeCCEEEEEEEEEEEecC
Confidence 99999999998754799999999999999999999999999874
No 18
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.1e-25 Score=275.02 Aligned_cols=444 Identities=11% Similarity=-0.027 Sum_probs=337.1
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 001060 133 LCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDK 212 (1169)
Q Consensus 133 ~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~ 212 (1169)
.+...|..++..+.+.|++++|+.+|++++...| +...|..++..+. ..|++++|+.+|++++.. ..+..+|..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 155 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYC-CTGDYARAKCLLTKEDLY----NRSSACRYL 155 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHTCGG----GTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC-CchHHHHHHHHHH-HcCcHHHHHHHHHHHhcc----ccchhHHHH
Confidence 4578899999999999999999999999999888 4577888888888 789999999999998763 235678999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhcc----------------hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhC
Q 001060 213 YIEYEYMQQEWSRVAMIYTRILENP----------------IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA 276 (1169)
Q Consensus 213 y~~~e~~~~~~~~a~~iY~r~L~~p----------------~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~ 276 (1169)
.+..+...|+++.|+.+|++++... ..+...++.....+..... .++|..+..++...
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN------FDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHh
Confidence 9999999999999999999643322 1123334433333333221 23333333322221
Q ss_pred CCccchhhhccccccCC-cc------ccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccC
Q 001060 277 PSETGAEVKANEEEVQP-DA------TEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVK 349 (1169)
Q Consensus 277 ~~e~~~~~~~~~~~~~~-~~------~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~ 349 (1169)
........... ....- .+ .... ........+......+...+...|.+.+++++++..|+++++
T Consensus 230 ~p~~~~~~~~l-~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~------- 300 (597)
T 2xpi_A 230 DAKCYEAFDQL-VSNHLLTADEEWDLVLKL-NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING------- 300 (597)
T ss_dssp CTTCHHHHHHH-HHTTCSCHHHHHHHHHHS-CTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT-------
T ss_pred CchhhHHHHHH-HHhhcccchhHHHHHHhc-CCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc-------
Confidence 11100000000 00000 00 0000 000000000111111112223456678999999999999887
Q ss_pred CCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHH
Q 001060 350 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 350 pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
. +.+...|..++..+.+.|++++|+.+|++++...|.+..+|..++.++...|++++|..+|++++... |++..+|.
T Consensus 301 -~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 377 (597)
T 2xpi_A 301 -L-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWL 377 (597)
T ss_dssp -G-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHH
T ss_pred -C-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 2 56789999999999999999999999999999999999999999999999999999999999999877 88999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~ 509 (1169)
.++.++.+.|++++|+.+|+++ +++.|.+..+|..++.++.+.|++++|+.+|++++...+.+ ..+|..++..
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~ 450 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKS-STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC------SHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHH
Confidence 9999999999999999999998 77899999999999999999999999999999999987632 4578888888
Q ss_pred HHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHH
Q 001060 510 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLE 589 (1169)
Q Consensus 510 ~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~ 589 (1169)
+.. .|++++|+++|+++++..|.+...|..++.+....+. .+.+..+|++++...++.+ ..+.....+|...+.
T Consensus 451 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~--~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 451 HMQ-LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD---MQTAINHFQNALLLVKKTQ--SNEKPWAATWANLGH 524 (597)
T ss_dssp HHH-HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSC--CCSGGGHHHHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhhhccc--cchhhHHHHHHHHHH
Confidence 777 9999999999999999999999999999999888887 6668889999877632211 111223578999999
Q ss_pred HHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 590 FLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 590 fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
.....|+.+.+.++.++..+..+.
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999998765
No 19
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=2e-26 Score=261.99 Aligned_cols=272 Identities=20% Similarity=0.273 Sum_probs=236.7
Q ss_pred CChhcHHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHhccCCHHHHHHHHHHHHH-------cCCh-------HH
Q 001060 351 LSVTELENWHNYLDFIERD----GDF----NKVVKLYERCLIACANYPEYWIRYVLCMEA-------SGSM-------DL 408 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~----gd~----~~a~~lyeraL~~~~~~~e~W~~~a~~l~~-------~g~~-------e~ 408 (1169)
.++.+..+|..|++|+++. ++. ++|+.+|++||..+|.++++|+.++.++.. .|++ ++
T Consensus 3 ~~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 82 (308)
T 2ond_A 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 82 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHH
Confidence 4567889999999998775 344 689999999999999999999999999864 4886 89
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001060 409 AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE-AIIKHANMERRLGNLEDAFSLYEQAI 487 (1169)
Q Consensus 409 A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~-~~~~~a~~e~r~g~~e~A~~iy~~Al 487 (1169)
|+.+|+||++...|++..+|+.++.++.+.|++++|+.+|+++ +++.|.+.. +|+.++.++.+.|++++|+.+|++|+
T Consensus 83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL-LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999434899999999999999999999999999998 789999887 99999999999999999999999999
Q ss_pred HhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 488 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
+..|.. ..+|..++.+++...|++++|+++|+++++.+|++..+|..++.++..+|+ .+.++.+|++++..
T Consensus 162 ~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~ 232 (308)
T 2ond_A 162 EDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTS 232 (308)
T ss_dssp TSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHS
T ss_pred hcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc
Confidence 987632 567888888876657999999999999999999999999999999999887 67799999999996
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCC
Q 001060 568 NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAP 644 (1169)
Q Consensus 568 ~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~ 644 (1169)
.+ ++++....+|..|+.|+..+|+.+.+.++++|+.+++|.... .. ......||++++++.||++
T Consensus 233 ~~-----l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~---~~----~~~~~~~r~~~l~~~P~~~ 297 (308)
T 2ond_A 233 GS-----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE---GK----ETALLVDRYKFMDLYPCSA 297 (308)
T ss_dssp SS-----SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS---SC----HHHHHHTTTCBTTBCSSCH
T ss_pred cC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc---cc----hHHHHHHHHHhcccCCCCH
Confidence 32 223345689999999999999999999999999999997421 11 2256689999999999876
No 20
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.8e-24 Score=262.13 Aligned_cols=431 Identities=12% Similarity=0.015 Sum_probs=301.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF 178 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~ 178 (1169)
.++|..++..+... |++++|+.+|++++..+| +..+|..++..+.+.|++++|+.+|++++...|.+...|+.++..
T Consensus 6 a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRN--KKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 46777777777764 578888888888888887 577788888888888888888888888888888888888888777
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH---HHHHh-------------------c
Q 001060 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY---TRILE-------------------N 236 (1169)
Q Consensus 179 ~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY---~r~L~-------------------~ 236 (1169)
+. ..|++++|+..|++++...+.+... ...++...........+...+ +++.. .
T Consensus 83 ~~-~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NE-GLGKFADAMFDLSVLSLNGDFNDAS---IEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HH-HTTCHHHHHHHHHHHHHSSSCCGGG---THHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HH-HHhhHHHHHHHHHHHHhcCCCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 77 6778888888888887754322111 111111111111111110000 00000 0
Q ss_pred c-----------------------hhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCC
Q 001060 237 P-----------------------IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQP 293 (1169)
Q Consensus 237 p-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~ 293 (1169)
| +.+...++.....+...... ...+++......+.....+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~------------ 223 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP---ESYDKADESFTKAARLFEEQL------------ 223 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCT---THHHHHHHHHHHHHHHHHHHT------------
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh---ccHHHHHHHHHHHHHHhhhhh------------
Confidence 0 00112222222111110000 011222111111110000000
Q ss_pred ccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChH
Q 001060 294 DATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN 373 (1169)
Q Consensus 294 ~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~ 373 (1169)
+..+... .........+..+..+|...+++++++..|+++++ .+|. ...|..++..+...|+++
T Consensus 224 ---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------~~~~-~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 224 ---DKNNEDE----KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE--------LFPR-VNSYIYMALIMADRNDST 287 (514)
T ss_dssp ---TTSTTCH----HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH--------HCCC-HHHHHHHHHHHHTSSCCT
T ss_pred ---ccCcccc----ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------hCcc-HHHHHHHHHHHHHCCCHH
Confidence 0000000 00011122444556778889999999999999998 4556 889999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001060 374 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 453 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 453 (1169)
+|+..|++++..+|.+.++|..++.++...|++++|+..|++++++. |++..+|+.++.++...|++++|+.+|+++ +
T Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEA-K 365 (514)
T ss_dssp TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHH-H
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-H
Confidence 99999999999999999999999999999999999999999999987 788999999999999999999999999998 7
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhhhc
Q 001060 454 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV--SRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 454 ~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~--~g~~e~Ar~i~~kAl~~~ 531 (1169)
+..|++..+|..++.++.+.|++++|+.+|++++...+..........+|..++.++... .|++++|+..|+++++..
T Consensus 366 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 889999999999999999999999999999999999875422111133677777775432 789999999999999999
Q ss_pred CCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 532 QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 532 p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
|++...+..++.+....++ .+.+..+|++++...++++
T Consensus 446 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 446 PRSEQAKIGLAQMKLQQED---IDEAITLFEESADLARTME 483 (514)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSSHH
T ss_pred cccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhccccH
Confidence 9999999999998888887 6678999999999877654
No 21
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=99.94 E-value=1.4e-27 Score=239.69 Aligned_cols=125 Identities=19% Similarity=0.317 Sum_probs=106.0
Q ss_pred CCCcchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCC------------cccchhhHHHHHHHHhcC--CCcc--
Q 001060 717 PAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGD------------STESASSMLDIHSLVISL--NFTA-- 780 (1169)
Q Consensus 717 ~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~------------~~~~~~~~~~I~~~~~~l--~~~~-- 780 (1169)
...+.+||+.||++||++|+++|+.|++||+++|.|+ |+.. ....+.|.++|.++|.+| ||++
T Consensus 8 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s-~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~ 86 (154)
T 2qiy_A 8 GVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELT-HTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLK 86 (154)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-EECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEE-EccccccccccccccccceEeeCHHHHHHHHHhccCCCCceE
Confidence 3457899999999999999999999999999987666 4521 034556788999999999 9876
Q ss_pred eeEeeeeccccCC--CceEEEEEEEEEecCccccceeEEEEEEEeeC--CeEEEEcceEEeccCCCc
Q 001060 781 IEIKTINSLGSWN--GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE--KGYFVLNDIFHFLDEEPV 843 (1169)
Q Consensus 781 ~~i~~~d~q~~~~--~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~--~~y~v~nDifr~~~~~~~ 843 (1169)
++|.++|||++.+ +||||+|+|.|+.++. ++|+|+|||+|+|++ ++|||+||||||+++++.
T Consensus 87 h~I~s~D~q~~~~~~~~ilI~V~G~~~~~~~-~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~~ 152 (154)
T 2qiy_A 87 LKLDTIDFQYTGHLHKSILIMATGEMFWTGT-PVYKFCQTFILLPSSNGSTFDITNDIIRFISNSFK 152 (154)
T ss_dssp EEEEEEEEEEESGGGCEEEEEEEEEEEETTC-CCEEEEEEEEEEECC---CEEEEEEEEEEECC---
T ss_pred EEEEEEEEEEccCCCCEEEEEEEEEEEECCC-CCceEEEEEEEEEeCCCCcEEEEEEEEEEEcceec
Confidence 4799999999987 8999999999999886 799999999999997 599999999999998753
No 22
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.7e-25 Score=265.90 Aligned_cols=405 Identities=10% Similarity=0.012 Sum_probs=295.3
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 158 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 158 (1169)
+.+..++..|+++++.+| |..+|..++..+... |++++|+.+|++++..+|.+...|..++.++.+.|++++|+..|
T Consensus 20 g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELKE-DPVFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp SCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 457889999999999999 799999999999985 59999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH---HH-------------------------------HHHhcCCC-
Q 001060 159 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF---ER-------------------------------GLAYVGTD- 203 (1169)
Q Consensus 159 eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~---er-------------------------------Al~~~g~d- 203 (1169)
++++...|.+......++..... ......+.+.+ ++ .+......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLN-KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHH-HHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 99999987553333322222220 00000000000 00 00000000
Q ss_pred -------CCCHHHHHHHHHHHHH---hhhHHHHHHHHHHHHh-----c---c------hhhHHHHHHHHHHHHhcCCCcc
Q 001060 204 -------YLSFPLWDKYIEYEYM---QQEWSRVAMIYTRILE-----N---P------IQQLDRYFSSFKEFAASRPLSE 259 (1169)
Q Consensus 204 -------~~s~~lw~~y~~~e~~---~~~~~~a~~iY~r~L~-----~---p------~~~~~~~~~~~~~~~~~~~~~~ 259 (1169)
+.....|......... .++++.|+.+|++++. . | +.....++.....+.....
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 252 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND--- 252 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC---
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC---
Confidence 0013333333333332 4555555555555555 2 1 1122222222222211111
Q ss_pred ccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 260 LRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFET 339 (1169)
Q Consensus 260 ~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~ 339 (1169)
.+++......++.. .+. ...+..+..+|...+++++++..|++
T Consensus 253 ---~~~A~~~~~~~l~~-----------------------------~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 253 ---PLGAHEDIKKAIEL-----------------------------FPR-----VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp ---HHHHHHHHHHHHHH-----------------------------CCC-----HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred ---HHHHHHHHHHHHhh-----------------------------Ccc-----HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12221111100000 000 01223334566777788888999999
Q ss_pred hhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001060 340 AIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHV 419 (1169)
Q Consensus 340 al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~ 419 (1169)
+++ +++.....|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+.+|+++++.
T Consensus 296 ~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 296 ALK--------LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp HHT--------TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred Hhh--------cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 988 677778899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhh
Q 001060 420 FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE------AIIKHANMERR---LGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 420 ~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~------~~~~~a~~e~r---~g~~e~A~~iy~~Al~~~ 490 (1169)
. |+++.+|..++.++...|++++|+.+|+++ +++.|++.. +|+.++.++.. .|++++|+.+|++++...
T Consensus 368 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 368 F-PEAPEVPNFFAEILTDKNDFDKALKQYDLA-IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp S-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred c-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 7 889999999999999999999999999998 677777744 99999999999 999999999999999987
Q ss_pred hCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHh
Q 001060 491 KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 544 (1169)
Q Consensus 491 ~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~ 544 (1169)
+. .+.+|..++.++.. .|++++|+..|+++++..|++...+..+..+
T Consensus 446 ~~------~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 446 PR------SEQAKIGLAQMKLQ-QEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp TT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred cc------cHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 53 36788889998877 9999999999999999999999888655433
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.2e-24 Score=265.51 Aligned_cols=440 Identities=10% Similarity=0.008 Sum_probs=330.9
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~ 177 (1169)
..++|..++..+... |++++|+.+|++++..+|.+..+|..++.++.+.|++++|+++|++++...|.+...|+.++.
T Consensus 24 ~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTA--KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 568899999998884 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh-------HHHHHHHHHH
Q 001060 178 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ-------LDRYFSSFKE 250 (1169)
Q Consensus 178 ~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~-------~~~~~~~~~~ 250 (1169)
.+. ..|++++|+..|+ ++...+.. ...++......+....+..+|++++...+.. ...+...+..
T Consensus 102 ~~~-~~g~~~~A~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 102 ANE-SLGNFTDAMFDLS-VLSLNGDF------DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHH-HHTCHHHHHHHHH-HHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred HHH-HcCCHHHHHHHHH-HHhcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence 998 8899999999996 77644332 1122223333456678999999998762211 1111111110
Q ss_pred HHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH-----HHHHHH
Q 001060 251 FAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV-----REEMYK 325 (1169)
Q Consensus 251 ~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~-----~~~~y~ 325 (1169)
+ ..+.+. ..+.+.. ..... ...+...+.. ......
T Consensus 174 ~----------~~~~~~-------~~~~~~~----------------------~~~~~-~~~~~~~l~~~~~~~~~~~~~ 213 (537)
T 3fp2_A 174 F----------DSHLEV-------SSVNTSS----------------------NYDTA-YALLSDALQRLYSATDEGYLV 213 (537)
T ss_dssp S----------CHHHHH-------HTSCCCC----------------------SSCSS-HHHHHHHHHHHHTCSHHHHHH
T ss_pred c----------ChHHHH-------HHHhhcc----------------------ccccH-HHHHHHHHHHHHHhhhhhhHH
Confidence 0 001110 0000000 00000 0111111111 123344
Q ss_pred HHHHHHHHHHHHHHhhccCCcccCCCChhcHHH-------HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 326 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN-------WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 326 ~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~-------W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
..+.+++++..|+++++ .+|.+... |..++.++...|++++|+..|++++...|. ..+|+.++.
T Consensus 214 a~~~~~~A~~~~~~~l~--------~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~ 284 (537)
T 3fp2_A 214 ANDLLTKSTDMYHSLLS--------ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLAL 284 (537)
T ss_dssp HHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHH
Confidence 45689999999999998 55555544 555566777889999999999999999999 999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
++...|++++|+.+|+++++.. |+++.+|+.++.++...|++++|+..|+++ +++.|++..+|..++.++...|++++
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~~~g~~~~ 362 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA-QSLNPENVYPYIQLACLLYKQGKFTE 362 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999988 889999999999999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHH------HHHHhHhhCC---
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE------ALIHFESIQS--- 549 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~------~~a~~E~~~~--- 549 (1169)
|+.+|++++...|.. +.+|..++.++.. .|++++|+.+|+++++..|.+...+. ..+.+....+
T Consensus 363 A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 363 SEAFFNETKLKFPTL------PEVPTFFAEILTD-RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp HHHHHHHHHHHCTTC------THHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCCCC------hHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999998642 5688888988877 99999999999999998876543222 2222222220
Q ss_pred ----ChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001060 550 ----SPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 550 ----~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~~ 614 (1169)
...+.+.+..+|++++...+++. .+|..........|+.+.+.+.+++..++.+..
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSE---------QAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 01346788999999999877654 578888888999999999999999999998864
No 24
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=99.94 E-value=6.5e-27 Score=230.85 Aligned_cols=116 Identities=23% Similarity=0.415 Sum_probs=104.4
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccC------C
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW------N 793 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~------~ 793 (1169)
+.+||+.||++||++|+++|+.|++||+++|. +.|+|+.+ .|.++|.++|.+||+++++|.++|||++. +
T Consensus 13 a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~-ls~~g~~~---~G~~~I~~~l~~Lp~~~h~i~s~d~q~~~~~~~~~~ 88 (140)
T 1jkg_A 13 ACRAAEEFVNVYYTTMDKRRRLLSRLYMGTAT-LVWNGNAV---SGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQ 88 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEE-EEETTEEE---ESHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcE-EEECCeee---cCHHHHHHHHHhCCCceeEEEEEEEEEcCCcccCCC
Confidence 46799999999999999999999999999864 45798655 45567899999999999999999999986 5
Q ss_pred CceEEEEEEEEEecCccccceeEEEEEEEeeC----CeEEEEcceEEeccC
Q 001060 794 GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE----KGYFVLNDIFHFLDE 840 (1169)
Q Consensus 794 ~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~~----~~y~v~nDifr~~~~ 840 (1169)
+||||+|+|.++.+++ ++|+|+|||+|+|++ ++|||+||||||+++
T Consensus 89 ~~ilI~V~G~~~~~~~-~~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 89 TTVLVVICGSVKFEGN-KQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp CEEEEEEEEEEEETTS-CCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred CeEEEEEEEEEEECCC-CceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 8999999999999886 799999999999974 899999999999986
No 25
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=3.9e-23 Score=237.12 Aligned_cols=335 Identities=10% Similarity=0.061 Sum_probs=279.0
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~ 177 (1169)
|.+.|..++..+... |++++|..+|++++..+|.+...|..++..+...|++++|+..|++++...|.+...|..++.
T Consensus 2 ~~~~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAA--GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 568899999988874 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCC
Q 001060 178 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPL 257 (1169)
Q Consensus 178 ~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~ 257 (1169)
++. ..|++++|+..|+++++..+........|..+..+... .
T Consensus 80 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~------------------------------ 121 (359)
T 3ieg_A 80 LLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM-------Q------------------------------ 121 (359)
T ss_dssp HHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------H------------------------------
T ss_pred HHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH-------H------------------------------
Confidence 888 78999999999999988433100122222222221000 0
Q ss_pred ccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 258 SELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 337 (1169)
Q Consensus 258 ~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~ 337 (1169)
....+..+|...+++++|+..|
T Consensus 122 ----------------------------------------------------------~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 122 ----------------------------------------------------------RLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHccCHHHHHHHH
Confidence 0001123556677888899999
Q ss_pred HHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001060 338 ETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 417 (1169)
Q Consensus 338 e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl 417 (1169)
+++++ .+|.....|..++..+...|++++|+..|++++...|.+.++|+.++.++...|++++|...|++++
T Consensus 144 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 144 DKILE--------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHH--------hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988 5777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccChHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhhcCCChHH----HHHHHHHHHHHcCCHHHHHH
Q 001060 418 HVFVKRLPEIHLFA------------ARFKEQNGDIDGARAAYQLVHTETSPGLLE----AIIKHANMERRLGNLEDAFS 481 (1169)
Q Consensus 418 ~~~~p~~~~l~~~~------------a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~----~~~~~a~~e~r~g~~e~A~~ 481 (1169)
+.. |+....|..+ +.++...|++++|..+|+++ ++..|++.. +|..++.++...|++++|+.
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV-MKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 987 7777766544 77789999999999999998 778898774 46678999999999999999
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 482 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 482 iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
+|++++...|. .+.+|..++.++.. .|++++|...|+++++.+|++..++..+......
T Consensus 294 ~~~~~~~~~~~------~~~~~~~~~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPD------NVNALKDRAEAYLI-EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999998753 36789999999887 9999999999999999999999888776665543
No 26
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.2e-22 Score=239.85 Aligned_cols=375 Identities=11% Similarity=0.041 Sum_probs=296.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 195 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~er 195 (1169)
....+...+.+++..+|.+...|..++..+.+.|++++|+.+|++++...|.+..+|..++..+. ..|++++|+..|++
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH--HHHHHHHHHHhcCCCccccCHHHHHHHHHHH
Q 001060 196 GLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD--RYFSSFKEFAASRPLSELRTAEEVDAAAVAV 273 (1169)
Q Consensus 196 Al~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~ 273 (1169)
+++..+. ....|..++.....+|+++.|+.+|++++...+.+.. ..|..
T Consensus 86 al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 136 (450)
T 2y4t_A 86 VIQLKMD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ-------------------------- 136 (450)
T ss_dssp HHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH--------------------------
T ss_pred HHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH--------------------------
Confidence 9995443 6788999999999999999999999999887443220 00000
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh
Q 001060 274 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 353 (1169)
Q Consensus 274 ~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~ 353 (1169)
+ ..++.
T Consensus 137 ------------------------------------------l----~~~~~---------------------------- 142 (450)
T 2y4t_A 137 ------------------------------------------L----IKSDE---------------------------- 142 (450)
T ss_dssp ------------------------------------------H----HHHHH----------------------------
T ss_pred ------------------------------------------H----HHHHH----------------------------
Confidence 0 00110
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
...+...+..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|+++++.. |+++.+|..++.
T Consensus 143 --~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 143 --MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 12244445566778999999999999999999999999999999999999999999999999987 889999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001060 434 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH------------ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 501 (1169)
Q Consensus 434 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~------------a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~ 501 (1169)
++...|++++|+.+|+++ +++.|++...|..+ +.++.+.|++++|+.+|++++...|.+ ......
T Consensus 220 ~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~ 296 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVREC-LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI--AEYTVR 296 (450)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc--hHHHHH
Confidence 999999999999999998 78899999888766 889999999999999999999987642 111234
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHH
Q 001060 502 LYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAERE 581 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~ 581 (1169)
+|..++.++.+ .|++++|..+|+++++..|++..+|..++......++ .+.+..+|++++...|+++
T Consensus 297 ~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~--------- 363 (450)
T 2y4t_A 297 SKERICHCFSK-DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYETAQEHNENDQ--------- 363 (450)
T ss_dssp HHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSCH---------
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCcchH---------
Confidence 67778888776 9999999999999999999999999999998888887 6778999999999887664
Q ss_pred HHHHHHH------------HHHHhhC-----CHHHHHHHHHH-HHhhhCC
Q 001060 582 ELSCVFL------------EFLGLFG-----DAQLIKKAEDR-HARLFLP 613 (1169)
Q Consensus 582 ~i~~~~l------------~fe~~~G-----d~~~i~~v~~R-~~~~~~~ 613 (1169)
.++.... ++....| +.+.+++.+++ ..+..|.
T Consensus 364 ~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 364 QIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 2333333 2333344 56677777776 4444443
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=6.4e-21 Score=218.60 Aligned_cols=324 Identities=12% Similarity=0.032 Sum_probs=276.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 001060 134 CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKY 213 (1169)
Q Consensus 134 ~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y 213 (1169)
+...|+.++..+...|++++|+.+|++++...|.+.++|+.++..+. ..|++++|+..|+++++..+. ....|..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMD---FTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC---cchHHHHH
Confidence 46789999999999999999999999999999999999999999998 889999999999999996443 56889999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccc
Q 001060 214 IEYEYMQQEWSRVAMIYTRILENPI---QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEE 290 (1169)
Q Consensus 214 ~~~e~~~~~~~~a~~iY~r~L~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~ 290 (1169)
+......|+++.|..+|++++...+ .+...++.
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 113 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ-------------------------------------------- 113 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH--------------------------------------------
Confidence 9999999999999999999988744 21111100
Q ss_pred cCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcC
Q 001060 291 VQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG 370 (1169)
Q Consensus 291 ~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~g 370 (1169)
+..++. ...|...+..+...|
T Consensus 114 -----------------------------l~~~~~------------------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 114 -----------------------------LVKADE------------------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp -----------------------------HHHHHH------------------------------HHHHHHHHHHHHHTT
T ss_pred -----------------------------HHHHHH------------------------------HHHHHHHHHHHHHcc
Confidence 000000 123556677778899
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 450 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 450 (1169)
++++|+.+|++++...|.+..+|..++.++...|++++|..+|+++++.. |+++.+|+.++.++...|++++|+..|++
T Consensus 135 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 88999999999999999999999999999
Q ss_pred HhhhcCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001060 451 VHTETSPGLLEAIIKH------------ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 518 (1169)
Q Consensus 451 a~~~~~P~~~~~~~~~------------a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e 518 (1169)
+ +++.|++...|..+ +.++.+.|++++|..+|++++...|.. ......++..++.++.. .|+++
T Consensus 214 a-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~-~~~~~ 289 (359)
T 3ieg_A 214 C-LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV--AEYTVRSKERICHCFSK-DEKPV 289 (359)
T ss_dssp H-HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS--HHHHHHHHHHHHHHHHH-TTCHH
T ss_pred H-HhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHH-ccCHH
Confidence 8 78899988876544 777899999999999999999988642 11112346667888776 99999
Q ss_pred HHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 519 KARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 519 ~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
+|..+|+++++..|++..+|..++.+....++ .+.+..+|++++...|++.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCh
Confidence 99999999999999999999999999988887 6778999999999887654
No 28
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=8.2e-21 Score=215.41 Aligned_cols=300 Identities=9% Similarity=0.014 Sum_probs=250.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 88 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 88 l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
+...+...+.+.+.+..++..+... |++++|+.+|++++..+|.+...|..++..+...|++++|+.+|++++...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYN--CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC
Confidence 4466777888889999999988874 69999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHH
Q 001060 168 SVDIWLHYCIFAINTYG-DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFS 246 (1169)
Q Consensus 168 s~~lw~~y~~~~~~~~~-~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~ 246 (1169)
+..+|+..+.++. ..+ ++++|+..|++++... +.....|..++......++++.|+.+|++++...+.+...+
T Consensus 89 ~~~~~~~l~~~~~-~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-- 162 (330)
T 3hym_B 89 NPVSWFAVGCYYL-MVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM-- 162 (330)
T ss_dssp STHHHHHHHHHHH-HSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH--
T ss_pred CHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH--
Confidence 9999999999988 778 9999999999999844 44667899999999999999999999999987633211111
Q ss_pred HHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH
Q 001060 247 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 326 (1169)
Q Consensus 247 ~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~ 326 (1169)
..+..+|..
T Consensus 163 -----------------------------------------------------------------------~~l~~~~~~ 171 (330)
T 3hym_B 163 -----------------------------------------------------------------------LYIGLEYGL 171 (330)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 112345667
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---------cCCHHHHHHHH
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC---------ANYPEYWIRYV 397 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~---------~~~~e~W~~~a 397 (1169)
.+++++++..|+++++ ++|.+...|..++..+...|++++|+..|++++... +....+|..++
T Consensus 172 ~~~~~~A~~~~~~al~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 172 TNNSKLAERFFSQALS--------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp TTCHHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 7788888899999988 677778889999998899999999999999999886 66778999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH-HHcCCH
Q 001060 398 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME-RRLGNL 476 (1169)
Q Consensus 398 ~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e-~r~g~~ 476 (1169)
.++...|++++|+..|++++++. |++..+|+.++.++...|++++|+..|+++ ++++|++..+|..++.++ ...|+.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA-LGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT-TTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH-HccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999999999999999887 788899999999999999999999999998 788999999998888866 455554
No 29
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.1e-20 Score=214.66 Aligned_cols=243 Identities=16% Similarity=0.273 Sum_probs=176.0
Q ss_pred CCCHHHHHHHHHHHHHh----CCH----HHHHHHHHHHHhccCCCHHHHHHHHHHHHh------hcCCH-------HHHH
Q 001060 132 PLCYGYWKKYADHEARV----GSM----DKVVEVYERAVQGVTYSVDIWLHYCIFAIN------TYGDP-------ETIR 190 (1169)
Q Consensus 132 P~~~~~W~~~a~~e~~~----~~~----e~A~~l~eraL~~~P~s~~lw~~y~~~~~~------~~~~~-------e~Ar 190 (1169)
|....+|++|+++|.+. ++. ++|+.+|+++|..+|.++++|+.|+.++.. ..|+. ++|+
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 44567888888888775 233 678888888888888888888888888762 24664 7888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHH
Q 001060 191 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAA 270 (1169)
Q Consensus 191 ~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~ 270 (1169)
.+|++|+..+ ++.+..+|..|+.++...|++++|+.+|+++|++++.
T Consensus 85 ~~~~rAl~~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------------------------- 131 (308)
T 2ond_A 85 NIYERAISTL--LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------------------------------- 131 (308)
T ss_dssp HHHHHHHTTT--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-------------------------------
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-------------------------------
Confidence 8888888732 2336678888888888888888887777777654322
Q ss_pred HHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCC
Q 001060 271 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP 350 (1169)
Q Consensus 271 ~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~p 350 (1169)
T Consensus 132 -------------------------------------------------------------------------------- 131 (308)
T 2ond_A 132 -------------------------------------------------------------------------------- 131 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhcHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccChHHH
Q 001060 351 LSVTELE-NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIH 428 (1169)
Q Consensus 351 l~~~~~~-~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~-~g~~e~A~~vl~rAl~~~~p~~~~l~ 428 (1169)
+.. +|..|+.++.+.|++++|+.+|++++..+|.+..+|+.++.+... .|++++|+.+|+++++.+ |+++.+|
T Consensus 132 ----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (308)
T 2ond_A 132 ----DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYV 206 (308)
T ss_dssp ----CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred ----CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 112 466666666677777777777777777777777777766665433 577777888888887776 6777778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhh---cCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 429 LFAARFKEQNGDIDGARAAYQLVHTE---TSPG-LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 429 ~~~a~~~e~~g~~~~A~~~~~~a~~~---~~P~-~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
+.++.++.+.|++++|+.+|+++ ++ +.|+ ...+|..++.++.+.|++++|+.+++++++..|.+
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~a-l~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERV-LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH-HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 77787777778888888888877 44 2453 67778888888888888888888888888877653
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.5e-20 Score=211.41 Aligned_cols=304 Identities=8% Similarity=-0.015 Sum_probs=257.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001060 123 VYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 202 (1169)
Q Consensus 123 ~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~ 202 (1169)
.....+...|.+...+..++..+...|++++|+++|++++...|.+...|..++..+. ..|+.++|+.+|+++++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLV-ELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp ----------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcC
Confidence 3456777789999999999999999999999999999999999999999999998888 789999999999999995443
Q ss_pred CCCCHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccc
Q 001060 203 DYLSFPLWDKYIEYEYMQQ-EWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETG 281 (1169)
Q Consensus 203 d~~s~~lw~~y~~~e~~~~-~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~ 281 (1169)
...+|...+......+ +++.|..+|++++...+.+...+
T Consensus 89 ---~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------------------- 128 (330)
T 3hym_B 89 ---NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW------------------------------------- 128 (330)
T ss_dssp ---STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHH-------------------------------------
T ss_pred ---CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHH-------------------------------------
Confidence 6678999999888899 99999999999987644322111
Q ss_pred hhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHH
Q 001060 282 AEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN 361 (1169)
Q Consensus 282 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~ 361 (1169)
..+..+|...+++++|+..|+++++ +.+.....|..
T Consensus 129 ------------------------------------~~l~~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~ 164 (330)
T 3hym_B 129 ------------------------------------IAYGHSFAVESEHDQAMAAYFTAAQ--------LMKGCHLPMLY 164 (330)
T ss_dssp ------------------------------------HHHHHHHHHHTCHHHHHHHHHHHHH--------HTTTCSHHHHH
T ss_pred ------------------------------------HHHHHHHHHccCHHHHHHHHHHHHH--------hccccHHHHHH
Confidence 1224466778889999999999998 56777788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh--------ccChHHHHHHHH
Q 001060 362 YLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV--------KRLPEIHLFAAR 433 (1169)
Q Consensus 362 yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~--------p~~~~l~~~~a~ 433 (1169)
++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|..+|++++.+.+ +....+|..++.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999763 456789999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001060 434 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 513 (1169)
Q Consensus 434 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~ 513 (1169)
++...|++++|+..|+++ +++.|++..+|..++.++.+.|++++|+.+|+++++..|. .+..+..++..+...
T Consensus 245 ~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQA-LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD------DTFSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC------CHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHH-HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC------chHHHHHHHHHHHHH
Confidence 999999999999999998 7889999999999999999999999999999999998863 366788888776554
Q ss_pred hCCHH
Q 001060 514 SRNAE 518 (1169)
Q Consensus 514 ~g~~e 518 (1169)
.|+.+
T Consensus 318 ~g~~~ 322 (330)
T 3hym_B 318 IGDSE 322 (330)
T ss_dssp TTC--
T ss_pred hCchh
Confidence 66543
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=4.5e-20 Score=221.62 Aligned_cols=386 Identities=12% Similarity=0.041 Sum_probs=269.2
Q ss_pred hHHHHHHHHHHhCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCH
Q 001060 83 GEEDRLWNIVKANSSD--FSAWTALLEETEKLAQDNIVKIRRVYDAFLAE---------FPLCYGYWKKYADHEARVGSM 151 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d--~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~---------~P~~~~~W~~~a~~e~~~~~~ 151 (1169)
.-++++...++..+.. ...+..|+.++... |++++|++.|+++++. +|.....|..++.++...|++
T Consensus 33 ~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~--G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~ 110 (472)
T 4g1t_A 33 DFEDKVFYRTEFQNREFKATMCNLLAYLKHLK--GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL 110 (472)
T ss_dssp HHHHHHHHHTTSCC---CCHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh
Confidence 3344444444444433 34556788887774 6999999999999986 677888999999999999999
Q ss_pred HHHHHHHHHHHhccC--------CCHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---
Q 001060 152 DKVVEVYERAVQGVT--------YSVDIWLHYCIFAIN-TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM--- 219 (1169)
Q Consensus 152 e~A~~l~eraL~~~P--------~s~~lw~~y~~~~~~-~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~--- 219 (1169)
++|+..|++++.+.+ ....++...+..+.. ..+++++|+..|++++...+. ...+|..+......
T Consensus 111 ~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---~~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDN 187 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcC
Confidence 999999999998642 345555554433331 345789999999999996544 55666666554333
Q ss_pred hhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCcccccc
Q 001060 220 QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQT 299 (1169)
Q Consensus 220 ~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~ 299 (1169)
.++.+.|...|++++++.+.+...+......
T Consensus 188 ~~~~~~al~~~~~al~l~p~~~~~~~~l~~~------------------------------------------------- 218 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALK------------------------------------------------- 218 (472)
T ss_dssp SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHH-------------------------------------------------
T ss_pred chHHHHHHHHHHHHhhcCCcchHHHHHHHHH-------------------------------------------------
Confidence 3455678888988888754433332222111
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHH
Q 001060 300 SKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 379 (1169)
Q Consensus 300 ~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~ly 379 (1169)
...++...+++++++..|++++. ++|.....|..++.++...|++++++..|
T Consensus 219 --------------------~~~~~~~~~~~~~a~~~~~~al~--------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 219 --------------------LHKMREEGEEEGEGEKLVEEALE--------KAPGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp --------------------HHHCC------CHHHHHHHHHHH--------HCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------HHHHHhhhhHHHHHHHHHHHHHH--------hCccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 11223344566777888888887 67888899999999999999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC
Q 001060 380 ERCLIACANYPEYWIRYVLCMEAS-------------------GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 440 (1169)
Q Consensus 380 eraL~~~~~~~e~W~~~a~~l~~~-------------------g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~ 440 (1169)
++++...|.+..+|..++.++... +.++.|...|++++++. |....+|+.+|.++...|+
T Consensus 271 ~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 271 KKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 999999999999999999876432 23567888999999887 7888999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCChHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 441 IDGARAAYQLVHTETSPGLLE---AIIKHANME-RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 441 ~~~A~~~~~~a~~~~~P~~~~---~~~~~a~~e-~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
+++|+.+|+++ +++.+.... +++.++.+. ...|++++|+..|++++.+.+.. .. . .+.
T Consensus 350 ~~~A~~~~~ka-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~------~~----------~-~~~ 411 (472)
T 4g1t_A 350 YEEAEYYFQKE-FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS------RE----------K-EKM 411 (472)
T ss_dssp HHHHHHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC------HH----------H-HHH
T ss_pred HHHHHHHHHHH-HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc------HH----------H-HHH
Confidence 99999999998 677776543 456666654 46789999999999999988632 10 0 223
Q ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 517 AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 517 ~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
...+.++++++++.+|.+...|..++.+....|+ .+.+..+|+++|...+..|
T Consensus 412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~---~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK---MQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH---CC-----------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCC
Confidence 5667788999999999999888877777666554 4557899999999876665
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=9.2e-21 Score=219.19 Aligned_cols=305 Identities=12% Similarity=-0.030 Sum_probs=245.1
Q ss_pred hhHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHH
Q 001060 115 DNIVKIRR-VYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETI 189 (1169)
Q Consensus 115 ~~i~~Ar~-~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~A 189 (1169)
+++++|.. .|++++...|.+. ..|+.++..+.+.|++++|+.+|++++...|.+..+|..++..+. ..|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHH
Confidence 47778888 8888888888763 568889999999999999999999999999999999999888888 78899999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHH
Q 001060 190 RRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAA 269 (1169)
Q Consensus 190 r~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~ 269 (1169)
+..|+++++..+ ....+|..++......|+++.|+.+|++++...+.....+.... ..
T Consensus 118 ~~~~~~al~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~------------------ 175 (368)
T 1fch_A 118 ISALRRCLELKP---DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE-EG------------------ 175 (368)
T ss_dssp HHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------------------
T ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH-HH------------------
Confidence 999999998544 35678888888888889999999999998887433211110000 00
Q ss_pred HHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccC
Q 001060 270 AVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVK 349 (1169)
Q Consensus 270 ~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~ 349 (1169)
.. .. . ..........++ ..+++++++..|+++++
T Consensus 176 -----------~~--~~-----~--------------------~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~------- 209 (368)
T 1fch_A 176 -----------AG--GA-----G--------------------LGPSKRILGSLL-SDSLFLEVKELFLAAVR------- 209 (368)
T ss_dssp ------------------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHH-------
T ss_pred -----------hh--hh-----c--------------------ccHHHHHHHHHh-hcccHHHHHHHHHHHHH-------
Confidence 00 00 0 000000112344 78899999999999998
Q ss_pred CCChh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHH
Q 001060 350 PLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 350 pl~~~--~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
++|. ....|..++..+...|++++|+..|++++...|.+..+|..++.++...|++++|+.+|++++++. |++..+
T Consensus 210 -~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 287 (368)
T 1fch_A 210 -LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRS 287 (368)
T ss_dssp -HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 5666 688999999999999999999999999999999999999999999999999999999999999987 889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGL-----------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-----------~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
|+.++.++...|++++|+..|+++ +++.|++ ..+|..++.++..+|++++|..+++++++...
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEA-LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 999999999999999999999998 7778877 89999999999999999999999998888763
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.1e-19 Score=214.35 Aligned_cols=372 Identities=14% Similarity=0.032 Sum_probs=270.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcC----
Q 001060 135 YGYWKKYADHEARVGSMDKVVEVYERAVQG---------VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVG---- 201 (1169)
Q Consensus 135 ~~~W~~~a~~e~~~~~~e~A~~l~eraL~~---------~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g---- 201 (1169)
..++..++.++..+|++++|++.|++++.+ +|.....|..++..+. ..|++++|...|++++....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhccc
Confidence 567778999999999999999999999986 4566778888888887 89999999999999997532
Q ss_pred -CCCCCHHHHHHHHH--HHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCC
Q 001060 202 -TDYLSFPLWDKYIE--YEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPS 278 (1169)
Q Consensus 202 -~d~~s~~lw~~y~~--~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~ 278 (1169)
.+.....++..... .....+++++|+.+|+++|++.+.+.+.++.....+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~--------------------------- 182 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS--------------------------- 182 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH---------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------
Confidence 12223344433322 223346799999999999998665544433222111
Q ss_pred ccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHH
Q 001060 279 ETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN 358 (1169)
Q Consensus 279 e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~ 358 (1169)
..+...++.++++..|+++|+ ++|.....
T Consensus 183 -------------------------------------------~~l~~~~~~~~al~~~~~al~--------l~p~~~~~ 211 (472)
T 4g1t_A 183 -------------------------------------------YRLDNWPPSQNAIDPLRQAIR--------LNPDNQYL 211 (472)
T ss_dssp -------------------------------------------HHHHHSCCCCCTHHHHHHHHH--------HCSSCHHH
T ss_pred -------------------------------------------HHhcCchHHHHHHHHHHHHhh--------cCCcchHH
Confidence 001112233455667888887 67777777
Q ss_pred HHHHHHHH----HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 359 WHNYLDFI----ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 359 W~~yl~~~----~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
|..++..+ ...+++++++.+|++++...|.+..+|..++.++...|++++|+..|++++++. |++..+|..++.+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHH
Confidence 77765443 345788899999999999999999999999999999999999999999999988 8999999988877
Q ss_pred HHHc-------------------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001060 435 KEQN-------------------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 495 (1169)
Q Consensus 435 ~e~~-------------------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~ 495 (1169)
+... +.++.|...|+++ .+++|.+..+|..++.++...|++++|+.+|++++...+..
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~-- 367 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA-DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP-- 367 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH-HHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH--
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH-hhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC--
Confidence 6432 3467788899998 78899999999999999999999999999999999986531
Q ss_pred cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCC
Q 001060 496 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTA 575 (1169)
Q Consensus 496 ~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l 575 (1169)
.....++..++.+.....|++++|+..|++||++.|++..... ....+..++++++..+|++.
T Consensus 368 -~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-------------~~~~l~~~~~~~l~~~p~~~--- 430 (472)
T 4g1t_A 368 -VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-------------MKDKLQKIAKMRLSKNGADS--- 430 (472)
T ss_dssp -HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-------------HHHHHHHHHHHHHHHCC-CT---
T ss_pred -hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-------------HHHHHHHHHHHHHHhCCCCH---
Confidence 1223456778777666689999999999999999998864321 13456778889999888776
Q ss_pred CHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhC
Q 001060 576 NAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 612 (1169)
Q Consensus 576 ~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~ 612 (1169)
+.|..........|+.+.+.+.++|+.++-+
T Consensus 431 ------~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 431 ------EALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp ------THHHHHHHHHHHHHHCC--------------
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3677777777788888888888888877643
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=3.1e-20 Score=215.23 Aligned_cols=292 Identities=7% Similarity=-0.073 Sum_probs=234.9
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001060 122 RVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGL 197 (1169)
Q Consensus 122 ~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl 197 (1169)
..+++.+...+.+. ..|+.++..+.+.|++++|+.+|++++...|.+...|..++..+. ..|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 44455555555554 449999999999999999999999999999999999999999988 7899999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCC
Q 001060 198 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 277 (1169)
Q Consensus 198 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~ 277 (1169)
+..+ .....|..++..+...|+++.|+.+|+++++..+.....++.....
T Consensus 127 ~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--------------------------- 176 (365)
T 4eqf_A 127 ELQP---NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS--------------------------- 176 (365)
T ss_dssp HHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------------
T ss_pred hcCC---CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc---------------------------
Confidence 9544 4678899999988999999999999999988744322111111000
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh--c
Q 001060 278 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT--E 355 (1169)
Q Consensus 278 ~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~--~ 355 (1169)
..+...+..+|...+++++++..|+++++ ++|. .
T Consensus 177 ------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~ 212 (365)
T 4eqf_A 177 ------------------------------------PGLTRRMSKSPVDSSVLEGVKELYLEAAH--------QNGDMID 212 (365)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHHHH--------HSCSSCC
T ss_pred ------------------------------------hHHHHHHHHHHhhhhhHHHHHHHHHHHHH--------hCcCccC
Confidence 00112224466778899999999999998 4555 6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+.+|++++++. |++..+|+.++.++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999987 88999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 436 EQNGDIDGARAAYQLVHTETSPG------------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~------------~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
...|++++|+..|+++ +++.|+ +..+|..++.++..+|+.+.+..++++.+...
T Consensus 292 ~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 292 INLGAYREAVSNFLTA-LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHHTCCHHHHHHHHHH-HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred HHCCCHHHHHHHHHHH-HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 9999999999999998 677766 36789999999999999999998888766654
No 35
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=5.7e-20 Score=212.52 Aligned_cols=315 Identities=12% Similarity=0.067 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhccCCC----HHHHHHHHHHHHhhcCCHHHHHHH
Q 001060 118 VKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE-VYERAVQGVTYS----VDIWLHYCIFAINTYGDPETIRRL 192 (1169)
Q Consensus 118 ~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~-l~eraL~~~P~s----~~lw~~y~~~~~~~~~~~e~Ar~~ 192 (1169)
.++...++.+....|.+ . ...+++++|++ .|++++...|.+ ...|+..+..+. ..|++++|+..
T Consensus 18 ~~~~~~~~~~~~~~~~~-~---------~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~ 86 (368)
T 1fch_A 18 DKLQAELEEMAKRDAEA-H---------PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRL-QEGDLPNAVLL 86 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCchh-h---------HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHH-HCCCHHHHHHH
Confidence 33444555555555553 2 23478999999 999999998876 456888888888 88999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHH
Q 001060 193 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVA 272 (1169)
Q Consensus 193 ~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~ 272 (1169)
|+++++. ++....+|...+......|+++.|..+|+++++..+.+...++
T Consensus 87 ~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------- 136 (368)
T 1fch_A 87 FEAAVQQ---DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM--------------------------- 136 (368)
T ss_dssp HHHHHHS---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---------------------------
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHH---------------------------
Confidence 9999994 4446788999999999999999999999999877444322221
Q ss_pred HhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC
Q 001060 273 VAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 352 (1169)
Q Consensus 273 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~ 352 (1169)
.+..+|...+++++|+..|+++++ ++
T Consensus 137 ----------------------------------------------~l~~~~~~~g~~~~A~~~~~~~~~--------~~ 162 (368)
T 1fch_A 137 ----------------------------------------------ALAVSFTNESLQRQACEILRDWLR--------YT 162 (368)
T ss_dssp ----------------------------------------------HHHHHHHHTTCHHHHHHHHHHHHH--------TS
T ss_pred ----------------------------------------------HHHHHHHHcCCHHHHHHHHHHHHH--------hC
Confidence 223456667788888888888887 44
Q ss_pred hhcHHHHH----------------HHHHHHHHcCChHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCChHHHHHHHH
Q 001060 353 VTELENWH----------------NYLDFIERDGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALA 414 (1169)
Q Consensus 353 ~~~~~~W~----------------~yl~~~~~~gd~~~a~~lyeraL~~~~~--~~e~W~~~a~~l~~~g~~e~A~~vl~ 414 (1169)
|.....|. .+..++ ..|++++|+.+|++++...|. ...+|..++.++...|++++|+.+|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 241 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241 (368)
T ss_dssp TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444443 233444 789999999999999999999 89999999999999999999999999
Q ss_pred HHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCC
Q 001060 415 RATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE 494 (1169)
Q Consensus 415 rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~ 494 (1169)
+++.+. |+++.+|+.++.++...|++++|+.+|+++ +++.|++..+|..++.++.+.|++++|+.+|++++...|...
T Consensus 242 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 242 AALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRA-LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 999987 889999999999999999999999999998 788999999999999999999999999999999999987541
Q ss_pred c-----cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 495 H-----SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 495 ~-----~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
. .+....+|..++..+.. .|++++|..+++++++..
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSM-LGQSDAYGAADARDLSTL 360 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHH-HTCGGGHHHHHTTCHHHH
T ss_pred CccccccchhhHHHHHHHHHHHH-hCChHhHHHhHHHHHHHH
Confidence 1 12236789999999877 999999999999888653
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=3.8e-19 Score=201.36 Aligned_cols=285 Identities=9% Similarity=-0.006 Sum_probs=240.9
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 177 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~ 177 (1169)
+.+.|..++..+... +++++|+.+|++++..+|.+...|..++..+...|++++|+++|++++...|.+...|..++.
T Consensus 20 ~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKL--ANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 556788888888874 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCC
Q 001060 178 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPL 257 (1169)
Q Consensus 178 ~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~ 257 (1169)
.+. ..|++++|+..|++++...+.+. .+|..+... .+.. ...
T Consensus 98 ~~~-~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~-------------------~~~~--~~~------------- 139 (327)
T 3cv0_A 98 SHT-NEHNANAALASLRAWLLSQPQYE---QLGSVNLQA-------------------DVDI--DDL------------- 139 (327)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHTSTTTT---TC------------------------------------------------
T ss_pred HHH-HcCCHHHHHHHHHHHHHhCCccH---HHHHHHhHH-------------------HHHH--HHH-------------
Confidence 988 88999999999999998654432 222221100 0000 000
Q ss_pred ccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 001060 258 SELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE-MYKKAKEFDSKIIG 336 (1169)
Q Consensus 258 ~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~-~y~~~~~~~~ai~~ 336 (1169)
. ..... +|...+++++++..
T Consensus 140 ----------------------------------------------------------~-~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 140 ----------------------------------------------------------N-VQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp -----------------------------------------------------------------CCTTSHHHHHHHHHH
T ss_pred ----------------------------------------------------------H-HHHHhHHHHHcccHHHHHHH
Confidence 0 00001 23445677888888
Q ss_pred HHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 337 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 337 ~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
|+++++ .++.....|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|..+|+++
T Consensus 161 ~~~~~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 161 LHAALE--------MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHH--------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh--------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999987 566778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------------LLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------------~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
++.. |++..+|+.++.++...|++++|+..|+++ +++.|+ +..+|..++.++.++|++++|..+++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRA-IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9987 889999999999999999999999999998 778898 89999999999999999999999999
Q ss_pred HHHHhhh
Q 001060 485 QAIAIEK 491 (1169)
Q Consensus 485 ~Al~~~~ 491 (1169)
+++...+
T Consensus 311 ~~l~~~~ 317 (327)
T 3cv0_A 311 QNVEPFA 317 (327)
T ss_dssp CCSHHHH
T ss_pred HHHHhcc
Confidence 9988775
No 37
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=2.8e-19 Score=207.14 Aligned_cols=306 Identities=13% Similarity=0.059 Sum_probs=231.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 001060 138 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 217 (1169)
Q Consensus 138 W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e 217 (1169)
|+.........+....+...|.......+.+...|+..+..+. ..|++++|+.+|+++++..+ ....+|..++...
T Consensus 34 wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~ 109 (365)
T 4eqf_A 34 WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRL-KEGDLPVTILFMEAAILQDP---GDAEAWQFLGITQ 109 (365)
T ss_dssp -------------------CCCCCSSCTTTTCTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHHHHHhhhcccCCcccchhHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHH
Confidence 5554444333343333333333332222233455999998888 78999999999999999554 4678999999999
Q ss_pred HHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCcccc
Q 001060 218 YMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATE 297 (1169)
Q Consensus 218 ~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e 297 (1169)
...|+++.|+.+|++++...+.+...+
T Consensus 110 ~~~g~~~~A~~~~~~al~~~p~~~~~~----------------------------------------------------- 136 (365)
T 4eqf_A 110 AENENEQAAIVALQRCLELQPNNLKAL----------------------------------------------------- 136 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHH-----------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHH-----------------------------------------------------
Confidence 999999999999999988744432222
Q ss_pred ccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHH----------HHHHH
Q 001060 298 QTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY----------LDFIE 367 (1169)
Q Consensus 298 ~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~y----------l~~~~ 367 (1169)
..+..+|...+++++|+..|+++++ ++|.....|..+ +..+.
T Consensus 137 --------------------~~l~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~~~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 137 --------------------MALAVSYTNTSHQQDACEALKNWIK--------QNPKYKYLVKNKKGSPGLTRRMSKSPV 188 (365)
T ss_dssp --------------------HHHHHHHHHTTCHHHHHHHHHHHHH--------HCHHHHCC-------------------
T ss_pred --------------------HHHHHHHHccccHHHHHHHHHHHHH--------hCccchHHHhhhccchHHHHHHHHHHh
Confidence 1223456777888899999999988 566666666655 77778
Q ss_pred HcCChHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 445 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~--~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 445 (1169)
..|++++|+.+|++++...|. ++.+|..++.++...|++++|+.+|++++++. |++..+|..++.++...|++++|+
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 889999999999999999999 89999999999999999999999999999988 889999999999999999999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc------CchHHHHHHHHHHHHHHhCCHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS------QTLPMLYAQYSRFLHLVSRNAEK 519 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~------~~~~~l~~~~a~~~~~~~g~~e~ 519 (1169)
..|+++ +++.|++..+|..++.++.++|++++|+.+|++++.+.|..... .....+|..++..+.. .|+.+.
T Consensus 268 ~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 345 (365)
T 4eqf_A 268 EAYTRA-LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL-MDQPEL 345 (365)
T ss_dssp HHHHHH-HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH-HTCHHH
T ss_pred HHHHHH-HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH-cCcHHH
Confidence 999998 78899999999999999999999999999999999998753221 1124678888888766 999999
Q ss_pred HHHHHHHHhhhc
Q 001060 520 ARQILVDSLDHV 531 (1169)
Q Consensus 520 Ar~i~~kAl~~~ 531 (1169)
|.+++++.+...
T Consensus 346 a~~~~~~~l~~~ 357 (365)
T 4eqf_A 346 FQAANLGDLDVL 357 (365)
T ss_dssp HHHHHTTCCGGG
T ss_pred HHHHHHhhHHHH
Confidence 999988877654
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.82 E-value=6.4e-19 Score=205.60 Aligned_cols=107 Identities=7% Similarity=0.043 Sum_probs=97.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhccCCCH
Q 001060 91 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-MDKVVEVYERAVQGVTYSV 169 (1169)
Q Consensus 91 al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-~e~A~~l~eraL~~~P~s~ 169 (1169)
+|..+|.+.++|..++.++... +++++|+.+|+++|.++|.+..+|..++.++...|+ +++|+..|+++|...|.+.
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~--g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRD--ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred hhhCChhhHHHHHHHHHHHHHC--CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 5788999999999999999884 599999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHhc
Q 001060 170 DIWLHYCIFAINTYGDPETIRRLFERGLAYV 200 (1169)
Q Consensus 170 ~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~ 200 (1169)
.+|.+.+..+. ..|++++|+..|+++|...
T Consensus 167 ~a~~~~g~~~~-~~g~~~eAl~~~~kal~ld 196 (382)
T 2h6f_A 167 QVWHHRRVLVE-WLRDPSQELEFIADILNQD 196 (382)
T ss_dssp HHHHHHHHHHH-HHTCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHHhC
Confidence 99999988887 7788888888888887743
No 39
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=1.7e-16 Score=192.13 Aligned_cols=384 Identities=8% Similarity=-0.053 Sum_probs=269.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHH
Q 001060 84 EEDRLWNIVKANSSDFSAWTALLEETEKLA--QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEV 157 (1169)
Q Consensus 84 ~~~~l~~al~~nP~d~~aw~~L~~~~~~~~--~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l 157 (1169)
.++.++++.+ +.|.+++..|+..+..-. .+++++|...|++++.. .+...+..++.++.. .+++++|++.
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 3555555544 567788888887776610 14788888888888775 567778888888887 7788888888
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hhhHHHHHHHH
Q 001060 158 YERAVQGVTYSVDIWLHYCIFAINT---YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM----QQEWSRVAMIY 230 (1169)
Q Consensus 158 ~eraL~~~P~s~~lw~~y~~~~~~~---~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~----~~~~~~a~~iY 230 (1169)
|++++.. .+...++.++.++..- .+++++|+..|+++++. + ....+..+..+... .+++++|+..|
T Consensus 102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G----RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8888764 4677777777776621 56788888888888763 2 23445555555554 56788888888
Q ss_pred HHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchH
Q 001060 231 TRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEA 310 (1169)
Q Consensus 231 ~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 310 (1169)
+++++.. +...++.....+..... .....+++.....+.... + +.
T Consensus 175 ~~a~~~~--~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~~~~a~~~-----~--------------------------~~ 219 (490)
T 2xm6_A 175 SKAAEQG--NVWSCNQLGYMYSRGLG--VERNDAISAQWYRKSATS-----G--------------------------DE 219 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHT-----T--------------------------CH
T ss_pred HHHHHCC--CHHHHHHHHHHHhcCCC--CCcCHHHHHHHHHHHHHC-----C--------------------------CH
Confidence 8887762 23333333333322110 001122222111111000 0 00
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 001060 311 EELEKYIAVREEMYKK----AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER----DGDFNKVVKLYERC 382 (1169)
Q Consensus 311 ~~~~k~i~~~~~~y~~----~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~----~gd~~~a~~lyera 382 (1169)
.....+..+|.. .+++++++..|++++.. .....+..++.++.. .+++++|+.+|+++
T Consensus 220 ----~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 220 ----LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp ----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 022233445554 56788899999999862 345678888888777 78999999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC---CHHHHHHHHHHHhhh
Q 001060 383 LIACANYPEYWIRYVLCMEAS-----GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG---DIDGARAAYQLVHTE 454 (1169)
Q Consensus 383 L~~~~~~~e~W~~~a~~l~~~-----g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g---~~~~A~~~~~~a~~~ 454 (1169)
+.. .+++.++.++.++... +++++|+..|+++++. .++..++.++.++...| ++++|+..|+++ .+
T Consensus 286 ~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a-~~ 359 (490)
T 2xm6_A 286 AEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKA-AA 359 (490)
T ss_dssp HTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-HH
T ss_pred HHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHH-HH
Confidence 865 6789999999999887 8999999999999874 56789999999998866 889999999998 44
Q ss_pred cCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHH
Q 001060 455 TSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDS 527 (1169)
Q Consensus 455 ~~P~~~~~~~~~a~~e~r----~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~e~Ar~i~~kA 527 (1169)
. ++..+++.++.++.. .+++++|..+|+++++... +..+..++.++.. ..+++++|+..|++|
T Consensus 360 ~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 360 K--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL--------SAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 3 678999999999998 8999999999999998642 5678888888664 268999999999999
Q ss_pred hhhcCC---CHHHHHHHHH
Q 001060 528 LDHVQL---SKPLLEALIH 543 (1169)
Q Consensus 528 l~~~p~---s~~l~~~~a~ 543 (1169)
++..|+ +...+..+..
T Consensus 430 ~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 430 STNDMNLFGTENRNITEKK 448 (490)
T ss_dssp HHHHCCHHHHHHHHHHHTT
T ss_pred HHCCCCCcCCHHHHHHHHh
Confidence 999854 5555444443
No 40
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=2.8e-18 Score=194.23 Aligned_cols=290 Identities=10% Similarity=0.026 Sum_probs=238.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 001060 135 YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYI 214 (1169)
Q Consensus 135 ~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~ 214 (1169)
...|+..+..+...|++++|+.+|++++...|.+...|..++..+. ..|++++|+..|+++++..+ ....+|..++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la 96 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDP---KDIAVHAALA 96 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCc---CCHHHHHHHH
Confidence 4568899999999999999999999999999999999999999888 88999999999999999644 3677888888
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCc
Q 001060 215 EYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPD 294 (1169)
Q Consensus 215 ~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 294 (1169)
......|+++.|..+|++++...+.....+..
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 128 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSV------------------------------------------------ 128 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHH------------------------------------------------
Confidence 88888999999999999988663321000000
Q ss_pred cccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHH-HH-HHHHcCCh
Q 001060 295 ATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY-LD-FIERDGDF 372 (1169)
Q Consensus 295 ~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~y-l~-~~~~~gd~ 372 (1169)
+.. . . +.....+ .+ +. .+...|++
T Consensus 129 ---------------------~~~----~-------------~---------------~~~~~~~-~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 129 ---------------------NLQ----A-------------D---------------VDIDDLN-VQSEDFFFAAPNEY 154 (327)
T ss_dssp -----------------------------------------------------------------------CCTTSHHHH
T ss_pred ---------------------HhH----H-------------H---------------HHHHHHH-HHHHhHHHHHcccH
Confidence 000 0 0 0000001 11 11 23456788
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 373 NKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 373 ~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
++|+..|++++..+|.+..+|..++.++...|++++|+.+|+++++.. |++..+|..++.++...|++++|+.+|+++
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a- 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA- 232 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999987 889999999999999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc------hHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 453 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT------LPMLYAQYSRFLHLVSRNAEKARQILVD 526 (1169)
Q Consensus 453 ~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~------~~~l~~~~a~~~~~~~g~~e~Ar~i~~k 526 (1169)
+++.|++..+|..++.++.+.|++++|+.+|++++...+....... .+.+|..++.++.. .|++++|..++++
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV-MNRPDLVELTYAQ 311 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH-TTCHHHHHHHTTC
T ss_pred HHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 7889999999999999999999999999999999999864211111 46788899998877 9999999999999
Q ss_pred HhhhcCC
Q 001060 527 SLDHVQL 533 (1169)
Q Consensus 527 Al~~~p~ 533 (1169)
+++..|+
T Consensus 312 ~l~~~~~ 318 (327)
T 3cv0_A 312 NVEPFAK 318 (327)
T ss_dssp CSHHHHH
T ss_pred HHHhcch
Confidence 9887653
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=3.2e-18 Score=199.63 Aligned_cols=256 Identities=9% Similarity=0.002 Sum_probs=196.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHhcCCCC
Q 001060 126 AFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-PETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 126 ~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~-~e~Ar~~~erAl~~~g~d~ 204 (1169)
.+|...|.+..+|..++.++.+.|++++|+++|+++|.+.|.+..+|...+.++. ..|+ +++|+..|+++|...+
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P--- 163 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQP--- 163 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCT---
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCC---
Confidence 3466788889999999999999999999999999999999999999999988887 6664 7777777777766322
Q ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhh
Q 001060 205 LSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEV 284 (1169)
Q Consensus 205 ~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~ 284 (1169)
T Consensus 164 -------------------------------------------------------------------------------- 163 (382)
T 2h6f_A 164 -------------------------------------------------------------------------------- 163 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHH
Q 001060 285 KANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLD 364 (1169)
Q Consensus 285 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~ 364 (1169)
.+..+|..++.
T Consensus 164 ---------------------------------------------------------------------~~~~a~~~~g~ 174 (382)
T 2h6f_A 164 ---------------------------------------------------------------------KNYQVWHHRRV 174 (382)
T ss_dssp ---------------------------------------------------------------------TCHHHHHHHHH
T ss_pred ---------------------------------------------------------------------CCHHHHHHHHH
Confidence 22334444455
Q ss_pred HHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH-cCCHHH
Q 001060 365 FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ-NGDIDG 443 (1169)
Q Consensus 365 ~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~-~g~~~~ 443 (1169)
.+...|++++|+..|+++|..+|.+..+|+.++.++...|++++|+..|++++++. |++..+|+.++.++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 55556677777777778887888888888888877777778888888888888776 7777788888777777 555466
Q ss_pred H-----HHHHHHHhhhcCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh--
Q 001060 444 A-----RAAYQLVHTETSPGLLEAIIKHANMERRLG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS-- 514 (1169)
Q Consensus 444 A-----~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g--~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~-- 514 (1169)
| +..|+++ ++++|++..+|+.++.++...| ++++|+..++++ +..+ ..+.++..++.++....
T Consensus 254 A~~~~el~~~~~A-l~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p------~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 254 AVLEREVQYTLEM-IKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH------SSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp HHHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC------CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC------CCHHHHHHHHHHHHHHhcc
Confidence 6 4778887 7788888888888888887777 578888888776 4432 33667777787776621
Q ss_pred -----CC-HHHHHHHHHHH-hhhcCCCHHHHHHHHH
Q 001060 515 -----RN-AEKARQILVDS-LDHVQLSKPLLEALIH 543 (1169)
Q Consensus 515 -----g~-~e~Ar~i~~kA-l~~~p~s~~l~~~~a~ 543 (1169)
++ +++|+++|+++ ++++|....+|..++.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 23 59999999999 9999999999975554
No 42
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=7.4e-15 Score=177.77 Aligned_cols=373 Identities=9% Similarity=-0.039 Sum_probs=277.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh----cCCHHHHHH
Q 001060 120 IRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINT----YGDPETIRR 191 (1169)
Q Consensus 120 Ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~----~~~~e~Ar~ 191 (1169)
+...++++.. +.+...+..++.++.. .+++++|+..|++++.. .+.+.++.++.++. . .++.++|+.
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYM-NGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 3455555544 6788999999999998 89999999999999986 68899999998888 5 789999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHH
Q 001060 192 LFERGLAYVGTDYLSFPLWDKYIEYEYM----QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVD 267 (1169)
Q Consensus 192 ~~erAl~~~g~d~~s~~lw~~y~~~e~~----~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~ 267 (1169)
.|+++++. + ....+..+..+... .+++++|...|++++... +...++.....+...... ....+++.
T Consensus 101 ~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~--~~d~~~A~ 171 (490)
T 2xm6_A 101 WYKKAALK-G----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGV--TRDYVMAR 171 (490)
T ss_dssp HHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS--CCCHHHHH
T ss_pred HHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCC--CCCHHHHH
Confidence 99999983 2 34556666666666 679999999999999873 234444444444321110 01123332
Q ss_pred HHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Q 001060 268 AAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK----AKEFDSKIIGFETAIRR 343 (1169)
Q Consensus 268 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~----~~~~~~ai~~~e~al~r 343 (1169)
......... + +. .....+..+|.. .+++++++..|+++++.
T Consensus 172 ~~~~~a~~~-----~--------------------------~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 172 EWYSKAAEQ-----G--------------------------NV----WSCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHT-----T--------------------------CH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC-----C--------------------------CH----HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 211111100 0 00 123344567776 78899999999999872
Q ss_pred CCcccCCCChhcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 001060 344 PYFHVKPLSVTELENWHNYLDFIER----DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA----SGSMDLAHNALAR 415 (1169)
Q Consensus 344 ~~~~v~pl~~~~~~~W~~yl~~~~~----~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~----~g~~e~A~~vl~r 415 (1169)
.....+..++.++.. .+++++++.+|++++.. .+++.++.++.++.. .+++++|+..|++
T Consensus 217 ----------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~ 284 (490)
T 2xm6_A 217 ----------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRK 284 (490)
T ss_dssp ----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence 245678888888776 78999999999999865 678899999999988 7899999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHc-----CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 001060 416 ATHVFVKRLPEIHLFAARFKEQN-----GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQAI 487 (1169)
Q Consensus 416 Al~~~~p~~~~l~~~~a~~~e~~-----g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g---~~e~A~~iy~~Al 487 (1169)
+++. .++..++.++.++... +++++|+..|+++ .+. ++...++.++.++.+.| ++++|+.+|++++
T Consensus 285 a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a-~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 285 SAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS-AEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH-HHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH-Hhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 9863 5788999999999988 8999999999998 443 56788999999988866 7899999999999
Q ss_pred HhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh-CCChhHHHHHHHHHHH
Q 001060 488 AIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI-QSSPKQIDFLEQLVDK 563 (1169)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~-~~~~~~~~~~r~l~er 563 (1169)
+... +..+..++.++.. ..+++++|...|++|++.. +...+..+..+... .+...+.+.+...|++
T Consensus 359 ~~~~--------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 359 AKGE--------KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HTTC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HCCC--------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 8741 5678888887654 1578999999999999864 45555555555443 3333347788999999
Q ss_pred HhhcCC
Q 001060 564 FLMSNS 569 (1169)
Q Consensus 564 al~~~~ 569 (1169)
++...+
T Consensus 429 A~~~~~ 434 (490)
T 2xm6_A 429 ASTNDM 434 (490)
T ss_dssp HHHHHC
T ss_pred HHHCCC
Confidence 988764
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=3.9e-17 Score=175.25 Aligned_cols=198 Identities=13% Similarity=0.054 Sum_probs=173.4
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
.+...|..++..+.+.|++++|+..|+++|...|.++++|+.++.++...|++++|+..|++++++. |++..+|+.++.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4457899999999999999999999999999999999999999999999999999999999999988 899999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001060 434 FKEQN-----------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 502 (1169)
Q Consensus 434 ~~e~~-----------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l 502 (1169)
++... |++++|+..|+++ ++++|++..+|+.++.++...|++++|+..|++++++. .. +.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------~~~ 153 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDA-ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT------PEI 153 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC------HHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc------hHH
Confidence 99999 9999999999998 88999999999999999999999999999999999987 32 678
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHH
Q 001060 503 YAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKF 564 (1169)
Q Consensus 503 ~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~era 564 (1169)
+..++.++.. .|++++|+..|+++++..|++..++..++.+....++ .+.+..+|+++
T Consensus 154 ~~~la~~~~~-~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~ 211 (217)
T 2pl2_A 154 RSALAELYLS-MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK---AEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHH
Confidence 9999999877 9999999999999999999999999999988888776 44466666655
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.6e-16 Score=171.34 Aligned_cols=238 Identities=11% Similarity=-0.009 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC-------HH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS-------VD 170 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s-------~~ 170 (1169)
..+.|..++..+... |++++|+.+|++++..+ .+..+|..++..+...|++++|+++|++++...|.+ ..
T Consensus 4 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKA--RQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 356677777777663 47777777777777777 777777777777777777777777777777776655 56
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 001060 171 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKE 250 (1169)
Q Consensus 171 lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~ 250 (1169)
+|...+..+. ..+++++|+..|++++...+. . .
T Consensus 81 ~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~----~-------~----------------------------------- 113 (258)
T 3uq3_A 81 SFARIGNAYH-KLGDLKKTIEYYQKSLTEHRT----A-------D----------------------------------- 113 (258)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC----H-------H-----------------------------------
T ss_pred HHHHHHHHHH-HcccHHHHHHHHHHHHhcCch----h-------H-----------------------------------
Confidence 6666666666 566777777777776663321 0 0
Q ss_pred HHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 001060 251 FAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEF 330 (1169)
Q Consensus 251 ~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~ 330 (1169)
++...+++
T Consensus 114 ------------------------------------------------------------------------~~~~~~~~ 121 (258)
T 3uq3_A 114 ------------------------------------------------------------------------ILTKLRNA 121 (258)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHhHH
Confidence 11222334
Q ss_pred HHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHH
Q 001060 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAH 410 (1169)
Q Consensus 331 ~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~ 410 (1169)
++++..|++++. .++.....|..++..+...|++++|+..|++++...|.+..+|..++.++...|++++|+
T Consensus 122 ~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 122 EKELKKAEAEAY--------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHH--------cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence 445555666655 566667778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHH
Q 001060 411 NALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLLEAIIKHA 467 (1169)
Q Consensus 411 ~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a 467 (1169)
..|+++++.. |++..+|+.++.++...|++++|+..|+++ +++. |++..++..+.
T Consensus 194 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 194 ADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA-RTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhChhhcCCCchHHHHHHHH
Confidence 8888888876 778888888888888888888888888887 5666 77666665544
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=8.1e-17 Score=177.64 Aligned_cols=187 Identities=13% Similarity=0.098 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~ 437 (1169)
.|..++..+...|++++|+..|++++...|.+..+|..++.++...|++++|+..|++++++. |.+..+|+.++.....
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 355556666777888899999999999999999999999999999999999999999999876 8889999999955555
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhCCCc--cCchHHHHHHHHHHHHH
Q 001060 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN---LEDAFSLYEQAIAIEKGKEH--SQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~---~e~A~~iy~~Al~~~~~~~~--~~~~~~l~~~~a~~~~~ 512 (1169)
.+++++|+.+|+++ +++.|++...|+.++.++...++ +++|+..|+++++....... ......+|..++.++..
T Consensus 155 ~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKV-LELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 66999999999998 78899999999999999998888 88899999999998632111 01134577888888776
Q ss_pred HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh
Q 001060 513 VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 547 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~ 547 (1169)
.|++++|+..|+++++.+|++...+.....+...
T Consensus 234 -~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 234 -NRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred -cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 9999999999999999999999888766655543
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=4.8e-16 Score=181.51 Aligned_cols=328 Identities=9% Similarity=-0.028 Sum_probs=209.3
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc------C
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC----YGYWKKYADHEARVGSMDKVVEVYERAVQGV------T 166 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~----~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~------P 166 (1169)
.....|..++..+... |++++|+.+|++++...|.+ ..+|..++..+...|++++|+..|++++... |
T Consensus 7 ~~~~~l~~~g~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKS--GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455666777776663 47777777777777777776 3567777777777777777777777777652 3
Q ss_pred CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHH
Q 001060 167 YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFS 246 (1169)
Q Consensus 167 ~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~ 246 (1169)
....+|..++.++. ..|++++|+..|++++...+.. +.......++ ..+..+|.
T Consensus 85 ~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~-----------------~~~~~~~~~~--------~~l~~~~~ 138 (406)
T 3sf4_A 85 GEAKASGNLGNTLK-VLGNFDEAIVCCQRHLDISREL-----------------NDKVGEARAL--------YNLGNVYH 138 (406)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH-----------------TCHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhc-----------------ccccchHHHH--------HHHHHHHH
Confidence 34556666666665 5677777777777776633210 0000000000 00111111
Q ss_pred HHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH
Q 001060 247 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 326 (1169)
Q Consensus 247 ~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~ 326 (1169)
....+.. . ... .. +.. .. . ..
T Consensus 139 ~~g~~~~------~--------------------~~~-~~---------~~~--------~~-~--------------~a 159 (406)
T 3sf4_A 139 AKGKSFG------C--------------------PGP-QD---------VGE--------FP-E--------------EV 159 (406)
T ss_dssp HHHHTCC-------------------------------------------CC--------CC-H--------------HH
T ss_pred HcCCccc------c--------------------ccc-ch---------hhh--------hh-h--------------hH
Confidence 1111000 0 000 00 000 00 0 01
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH------HHHHHHHHH
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYVLCM 400 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e------~W~~~a~~l 400 (1169)
...+++++..|++++.. +......+.....|..++..+...|++++|+..|++++..++...+ +|..++.++
T Consensus 160 ~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSL--VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 11245555555555541 0001123445667888899999999999999999999998775544 899999999
Q ss_pred HHcCChHHHHHHHHHHHHHhhccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHHH
Q 001060 401 EASGSMDLAHNALARATHVFVKRL------PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHAN 468 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~------~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a~ 468 (1169)
...|++++|...|++++.+. +.. ..++..++.++...|++++|...|+++ +++.+. ...++..++.
T Consensus 238 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHH-HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH-HHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999887 443 678888999999999999999999997 444332 2667899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 469 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
++...|++++|+.+|++++.+.+..........++..++.++.. .|+
T Consensus 316 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 362 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV-LGL 362 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH-hhH
Confidence 99999999999999999999865432222334455666666554 443
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=1.4e-16 Score=170.84 Aligned_cols=194 Identities=18% Similarity=0.128 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 397 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a 397 (1169)
..++..+...+++++|+..|+++|+ ++|.+...|..++..+.+.|++++|+..|++++...|.+.+.|+.++
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~--------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALK--------ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3456678889999999999999999 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-----------CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 398 LCMEAS-----------GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 398 ~~l~~~-----------g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
.++... |++++|+..|++++++. |+++.+|+.++.++...|++++|+..|+++ ++++ ++..+|+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~-~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQA-LALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHH-Hhcc-cchHHHHHH
Confidence 999999 99999999999999988 899999999999999999999999999998 7788 999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLD 529 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~ 529 (1169)
+.++...|++++|+..|++++...|+ .+.++..++.++.. .|++++|+..|+++-.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK------DLDLRVRYASALLL-KGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-ccCHHHHHHHHHHHhh
Confidence 99999999999999999999999864 36788889888776 9999999999998754
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=5e-16 Score=171.24 Aligned_cols=141 Identities=17% Similarity=0.093 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 402 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~ 402 (1169)
+|...+++++|+..|+++++ ++|.....|..++......+++++|+..|++++...|.+...|+.++.++..
T Consensus 117 ~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIR--------PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA 188 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCC--------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 44555666666677777766 4566677777777333344589999999999999999999999999988888
Q ss_pred cCC---hHHHHHHHHHHHHHhhc--c-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 403 SGS---MDLAHNALARATHVFVK--R-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 403 ~g~---~e~A~~vl~rAl~~~~p--~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
.++ +++|+..|++++++... + ...+|..++.++...|++++|+..|+++ ++++|++..++..+..+...
T Consensus 189 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI-LALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHC-----
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCccHHHHHHHhhhhhcc
Confidence 887 88899999999887621 1 1257777888888888888888888887 77888888887776665543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=4e-16 Score=168.56 Aligned_cols=213 Identities=12% Similarity=0.078 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
.+...|...+++++|+..|+++++ .+|.....|..++..+...|++++|+..|++++...|.+..+|..++.
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIE--------ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp --------------CCTTHHHHHT--------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345677888999999999999998 677889999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 478 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 478 (1169)
++...|++++|+.+|+++++.. |++..+|+.++.++...|++++|+.+|+++ +++.|++..+|+.++.++.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRA-VELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999987 889999999999999999999999999998 78899999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhC
Q 001060 479 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 548 (1169)
Q Consensus 479 A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~ 548 (1169)
|+.+|++++...+. .+.+|..++.++.. .|++++|+.+|+++++..|++...+..+..+....
T Consensus 178 A~~~~~~~~~~~~~------~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG------HADAFYNAGVTYAY-KENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHHhCcc------cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 99999999998753 26688889988877 99999999999999999999999988777666543
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=8.5e-16 Score=180.55 Aligned_cols=295 Identities=9% Similarity=-0.028 Sum_probs=211.5
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc------
Q 001060 95 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQG------ 164 (1169)
Q Consensus 95 nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~------ 164 (1169)
++.....+..++..+... |++++|+.+|++++...|.+. .+|..++.++...|++++|+..|++++..
T Consensus 44 ~~~~~~~l~~~g~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNA--GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 344456667777777774 599999999999999999986 57889999999999999999999999887
Q ss_pred cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHH
Q 001060 165 VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRY 244 (1169)
Q Consensus 165 ~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~ 244 (1169)
.+....+|..++.++. ..|++++|+..|++++..... .++......
T Consensus 122 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~---------------- 167 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQ-----------------LGDRLSEGR---------------- 167 (411)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH-----------------HTCHHHHHH----------------
T ss_pred chHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH-----------------hhchHHHHH----------------
Confidence 3555666777776666 667777777777777652110 000000000
Q ss_pred HHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH
Q 001060 245 FSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY 324 (1169)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y 324 (1169)
.+..+..+|
T Consensus 168 -----------------------------------------------------------------------~~~~l~~~~ 176 (411)
T 4a1s_A 168 -----------------------------------------------------------------------ALYNLGNVY 176 (411)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 011112223
Q ss_pred HHHHH----------HHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc------cC
Q 001060 325 KKAKE----------FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC------AN 388 (1169)
Q Consensus 325 ~~~~~----------~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~------~~ 388 (1169)
...++ +.+++.. +++|+..|++++... +.
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~-----------------------------------~~~A~~~~~~al~~~~~~~~~~~ 221 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEA-----------------------------------LTRAVEFYQENLKLMRDLGDRGA 221 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCcccccccchhhhhhhhHH-----------------------------------HHHHHHHHHHHHHHHHHcCCHHH
Confidence 33333 2333333 344455555555442 23
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC----
Q 001060 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---- 458 (1169)
Q Consensus 389 ~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---- 458 (1169)
...+|..++.++...|++++|+..|++++.+. +... .++..++.++...|++++|+..|+++ +++.+.
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~ 299 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIA-REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT-LALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH-HHHHHHcCCH
Confidence 34689999999999999999999999999987 3333 38888999999999999999999998 454443
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 459 --LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 459 --~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
...+|..++.++...|++++|+.+|++++...+..........++..++.++.. .|++++|+..|++++++....
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA-IGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhhc
Confidence 267889999999999999999999999999875432223334577888888776 999999999999999887643
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.70 E-value=1e-15 Score=158.74 Aligned_cols=174 Identities=16% Similarity=0.131 Sum_probs=163.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
...+|..++..+.+.|++++|+..|+++|..+|.+.++|..++.++...|++++|+..+.+++... ++...++..++.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 514 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~ 514 (1169)
+...++++.|...+.++ .++.|.+..+|..++.++.++|++++|+..|+++++..|. .+.+|..++.++.. .
T Consensus 83 ~~~~~~~~~a~~~~~~a-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~lg~~~~~-~ 154 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRA-IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------FIRAYQSIGLAYEG-K 154 (184)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-T
T ss_pred HHHcCCHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch------hhhHHHHHHHHHHH-C
Confidence 99999999999999998 7889999999999999999999999999999999999864 37789999999887 9
Q ss_pred CCHHHHHHHHHHHhhhcCCCHHH
Q 001060 515 RNAEKARQILVDSLDHVQLSKPL 537 (1169)
Q Consensus 515 g~~e~Ar~i~~kAl~~~p~s~~l 537 (1169)
|++++|+..|++||+.+|++..+
T Consensus 155 g~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp TCHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCccCHHH
Confidence 99999999999999999976543
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=2.7e-15 Score=169.29 Aligned_cols=143 Identities=11% Similarity=-0.058 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh----
Q 001060 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---- 459 (1169)
Q Consensus 389 ~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---- 459 (1169)
...+|..++.++...|++++|...|++++.+.... ...++..++.++...|++++|..+|+++ +++.+..
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~ 260 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT-LLLARQLKDRA 260 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHhhcchh
Confidence 34588899999999999999999999999876321 1238888999999999999999999997 4444433
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 460 --LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 460 --~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
..++..++.++...|++++|+.+|++++...+..........++..++.++.. .|++++|+..|+++++..+.
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA-LGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHh
Confidence 66789999999999999999999999999875432223334567888888777 99999999999999987754
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.69 E-value=3.6e-15 Score=174.07 Aligned_cols=308 Identities=11% Similarity=-0.005 Sum_probs=214.3
Q ss_pred CCCchHHHHHHHHHHhCCCC----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHh
Q 001060 79 PAMSGEEDRLWNIVKANSSD----FSAWTALLEETEKLAQDNIVKIRRVYDAFLAE------FPLCYGYWKKYADHEARV 148 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d----~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~------~P~~~~~W~~~a~~e~~~ 148 (1169)
+.++.++..|+++++.+|.+ ...|..|+..+... |++++|..+|++++.. .|.....|..++.++...
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 56788999999999999999 46888999998885 5999999999999987 455678999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhh
Q 001060 149 GSMDKVVEVYERAVQGVTYS------VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE 222 (1169)
Q Consensus 149 ~~~e~A~~l~eraL~~~P~s------~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~ 222 (1169)
|++++|+..|++++...+.. ..+|..++.++. ..|+...+.. . ...+.. +......
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~--~---~~~~~~------------~~~a~~~ 162 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH-AKGKSFGCPG--P---QDVGEF------------PEEVRDA 162 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHHTCC------------CCC------------CHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HcCCcccccc--c---chhhhh------------hhhHHHH
Confidence 99999999999999987532 223444443333 2222000000 0 000000 0011112
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCc
Q 001060 223 WSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKP 302 (1169)
Q Consensus 223 ~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~ 302 (1169)
++.|...|++++.+-.. . .
T Consensus 163 ~~~A~~~~~~al~~~~~-----------~---~----------------------------------------------- 181 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTA-----------L---G----------------------------------------------- 181 (406)
T ss_dssp HHHHHHHHHHHHHHHHH-----------T---T-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHh-----------c---c-----------------------------------------------
Confidence 55555555555432100 0 0
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 303 VSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERC 382 (1169)
Q Consensus 303 ~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyera 382 (1169)
+.......+..+..+|...+++++++..|+++++. ....+........|..++..+...|++++|+..|+++
T Consensus 182 ------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 182 ------DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI--AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 00000112333456778888999999999998862 0000111223347888888889999999999999999
Q ss_pred HHhccCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 383 LIACANY------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 383 L~~~~~~------~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
+...+.. ..+|..++.++...|++++|...|++++.+.... ...++..++.++...|++++|+..|+++
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9988766 6799999999999999999999999999976321 2668889999999999999999999997
Q ss_pred hhhc------CCChHHHHHHHHHHHHHcCCH
Q 001060 452 HTET------SPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 452 ~~~~------~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
+++ .+....++..++.++...|+.
T Consensus 334 -l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 334 -LEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 443 233455677777777777665
No 54
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.3e-15 Score=161.65 Aligned_cols=223 Identities=9% Similarity=0.028 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-------
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY------- 389 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~------- 389 (1169)
+..++..|...+++++|+..|+++++ ++ .....|..++..+...|++++|+..|++++...|..
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~--------~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWE--------LH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------HS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--------hh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 34456788889999999999999998 34 567889999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 469 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 469 (1169)
..+|..++.++...|++++|+..|++++.+. +. +.++...|++++|...|+++ +..+|.+..+|..++.+
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RT--------ADILTKLRNAEKELKKAEAE-AYVNPEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC--------HHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-ch--------hHHHHHHhHHHHHHHHHHHH-HHcCcchHHHHHHHHHH
Confidence 7999999999999999999999999999976 33 34556677889999999998 78899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC
Q 001060 470 ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549 (1169)
Q Consensus 470 e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~ 549 (1169)
+...|++++|+.+|++++...+. .+.+|..++.++.. .|++++|...|+++++..|++...|..++......+
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998753 36788899988877 999999999999999999999999998888888888
Q ss_pred ChhHHHHHHHHHHHHhhcC
Q 001060 550 SPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 550 ~~~~~~~~r~l~eral~~~ 568 (1169)
+ .+.+..+|++++...
T Consensus 222 ~---~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 222 E---YASALETLDAARTKD 237 (258)
T ss_dssp C---HHHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHhC
Confidence 7 556788888887765
No 55
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.68 E-value=6.1e-17 Score=169.13 Aligned_cols=120 Identities=16% Similarity=0.263 Sum_probs=99.1
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcc------------------------------------cch
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST------------------------------------ESA 763 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~------------------------------------~~~ 763 (1169)
..+|+..||++||++++++|..|..||+++|.|+ |.++.. ...
T Consensus 10 ~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS-~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l~ 88 (221)
T 1of5_A 10 LGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFS-VSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLS 88 (221)
T ss_dssp TCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-EEECCC--------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEE-EEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhhc
Confidence 3569999999999999999999999999986554 555311 134
Q ss_pred hhHHHHHHHHhcCCCcceeE------eeeeccccCC-CceEEEEEEEEEecCcc--------------------------
Q 001060 764 SSMLDIHSLVISLNFTAIEI------KTINSLGSWN-GGVLVMVSGSVKTKEFC-------------------------- 810 (1169)
Q Consensus 764 ~~~~~I~~~~~~l~~~~~~i------~~~d~q~~~~-~~ilv~v~G~~~~~~~~-------------------------- 810 (1169)
.|.++|.++|.+||.+.+.| .++|||+... +||+|+|+|.+...+..
T Consensus 89 ~G~~~I~~~l~~LPkT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (221)
T 1of5_A 89 IGQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNST 168 (221)
T ss_dssp BHHHHHHHHHHHSCCEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-----------------------------
T ss_pred cCHHHHHHHHHhCCCeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCccccccccccccccccccccccccccc
Confidence 57889999999999888888 5999999755 69999999999875532
Q ss_pred -----ccceeEEEEEEEeeCCeEEEEcceEEeccC
Q 001060 811 -----RRRKFVQTFFLAPQEKGYFVLNDIFHFLDE 840 (1169)
Q Consensus 811 -----~~~~F~q~F~L~~~~~~y~v~nDifr~~~~ 840 (1169)
..|.|+|||+|.|.+++|+|.||+||+-..
T Consensus 169 ~~~~~~~rsF~RTFvL~P~~~~~~I~nD~l~ir~~ 203 (221)
T 1of5_A 169 SNNKLSKKSFDRTWVIVPMNNSVIIASDLLTVRAY 203 (221)
T ss_dssp CCSCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccccCCccceEEEEEEEecCCeEEEEeeEEEeecC
Confidence 478999999999998899999999998754
No 56
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.68 E-value=7.9e-17 Score=174.14 Aligned_cols=120 Identities=17% Similarity=0.229 Sum_probs=101.4
Q ss_pred chhHhHHHHHHHHhhhhC-cccccccccCCceEEEEcCCcc------------------------------cchhhHHHH
Q 001060 721 AQVGSYFVGQYYQVLQQQ-PDLVHQFYSDASSMIRVDGDST------------------------------ESASSMLDI 769 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~-p~~l~~fY~~~s~~~~~~g~~~------------------------------~~~~~~~~I 769 (1169)
.+||..||++||++++++ |..|.++|+++|.| .|+++.. ....|.++|
T Consensus 15 ~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~f-S~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~~I 93 (250)
T 1jkg_B 15 KSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACC-SLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNV 93 (250)
T ss_dssp HHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEE-EEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHHHH
T ss_pred HHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEE-EEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHHHH
Confidence 479999999999999998 99999999998655 4564321 135678899
Q ss_pred HHHHhcCCCcceeEe--eeeccccCCCceEEEEEEEEEecC---ccccceeEEEEEEEee-CCeEEEEcceEEeccCC
Q 001060 770 HSLVISLNFTAIEIK--TINSLGSWNGGVLVMVSGSVKTKE---FCRRRKFVQTFFLAPQ-EKGYFVLNDIFHFLDEE 841 (1169)
Q Consensus 770 ~~~~~~l~~~~~~i~--~~d~q~~~~~~ilv~v~G~~~~~~---~~~~~~F~q~F~L~~~-~~~y~v~nDifr~~~~~ 841 (1169)
.++|.+||.+.+.+. ++|||+..+++|+|+|+|.+...+ ..+.|.|+|||+|.|. +++|+|+||+||+.+..
T Consensus 94 ~~~l~~LP~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~~s 171 (250)
T 1jkg_B 94 VAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNAS 171 (250)
T ss_dssp HHHHTTSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEECC
T ss_pred HHHHHhCCCeeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEECCC
Confidence 999999998888766 899999878899999999999865 2368999999999996 47899999999998643
No 57
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=6.4e-15 Score=165.59 Aligned_cols=192 Identities=13% Similarity=0.089 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChH
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e 407 (1169)
+++++++..|++++.. ..+|.+...|..++..+...|++++|+.+|++ |.+.++|..++.++.+.|+++
T Consensus 79 ~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 79 SRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp TTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHH
Confidence 3455566667766651 13566778888888888899999999999998 889999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChHHHHH--HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLF--AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 485 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~--~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~ 485 (1169)
+|...|+++++.. |+.....+. |..+....|++++|+.+|+++ ++..|++..+|..++.++.++|++++|+.+|++
T Consensus 148 ~A~~~l~~~~~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 148 LARKELKKMQDQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999887 666544444 345555668999999999998 677999999999999999999999999999999
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH-HHHHHHHHHhhhcCCCHHHHH
Q 001060 486 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE-KARQILVDSLDHVQLSKPLLE 539 (1169)
Q Consensus 486 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e-~Ar~i~~kAl~~~p~s~~l~~ 539 (1169)
++...|. .+.+|.+++.++.. .|+.. .+..+++++++..|+++.+..
T Consensus 226 al~~~p~------~~~~l~~l~~~~~~-~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 226 ALDKDSG------HPETLINLVVLSQH-LGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHCTT------CHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhCCC------CHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999864 37788899888777 77765 478999999999999987763
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=1.1e-14 Score=158.68 Aligned_cols=210 Identities=10% Similarity=-0.001 Sum_probs=191.5
Q ss_pred CChhc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHH
Q 001060 351 LSVTE-LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 351 l~~~~-~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
.+|.. ...|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|+++++.. |.+..+|+
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 45665 78899999999999999999999999999999999999999999999999999999999999987 78899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 507 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a 507 (1169)
.++.++...|++++|+.+|+++ ++ ..|.+..+|..++.++...|++++|+.+|++++...+. .+.++..++
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la 182 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEA-SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------QPSVALEMA 182 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH-HhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------cHHHHHHHH
Confidence 9999999999999999999998 66 78999999999999999999999999999999998753 267888899
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 508 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 508 ~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
.++.. .|++++|..+|+++++..|.+...+..++.+....++ .+.+..++++++...++++
T Consensus 183 ~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 183 DLLYK-EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTSH
T ss_pred HHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCCCH
Confidence 98887 9999999999999999999999999888888888877 5668889999988877654
No 59
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=1.2e-16 Score=161.92 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=76.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.| +.++.+++++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5689999999999999999999999999999875 56777899999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87644
No 60
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=2.6e-17 Score=177.18 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=72.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC--CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..++|||+|||+++|+++|+++|++|| .|++|.| ++++.+|++||||||+|.+.++|.+||+. +++.|+|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i-~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKF-FENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEE-EECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 357999999999999999999999999 9999875 56888999999999999999999999985 8999999999999
Q ss_pred ecc
Q 001060 1109 ERR 1111 (1169)
Q Consensus 1109 ~~r 1111 (1169)
+++
T Consensus 146 ~a~ 148 (229)
T 3q2s_C 146 PVN 148 (229)
T ss_dssp ECC
T ss_pred ECC
Confidence 865
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.68 E-value=7.8e-15 Score=165.52 Aligned_cols=302 Identities=10% Similarity=-0.028 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------cCCC
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC----YGYWKKYADHEARVGSMDKVVEVYERAVQG------VTYS 168 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~----~~~W~~~a~~e~~~~~~e~A~~l~eraL~~------~P~s 168 (1169)
...|...+..+... |++++|+.+|++++...|.+ ..+|..++.++...|++++|+++|++++.. .+..
T Consensus 5 ~~~l~~~g~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKS--GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 45677777777663 58889999999999988888 467888888888889999999998888876 3344
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHH
Q 001060 169 VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF 248 (1169)
Q Consensus 169 ~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~ 248 (1169)
..+|...+.++. ..|++++|+..|++++...+... .......+|. .+..++...
T Consensus 83 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~-----------------~~~~~~~~~~--------~l~~~~~~~ 136 (338)
T 3ro2_A 83 AKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELN-----------------DKVGEARALY--------NLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTT-----------------CHHHHHHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhc-----------------CchHHHHHHH--------HHHHHHHHc
Confidence 666777777776 67888888888888877432210 0000000000 001111111
Q ss_pred HHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH
Q 001060 249 KEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK 328 (1169)
Q Consensus 249 ~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~ 328 (1169)
..+..... . ... . .... ...+
T Consensus 137 ~~~~~~~~---~-----------------~~~----------------~---------~~~~--------------~a~~ 157 (338)
T 3ro2_A 137 GKSFGCPG---P-----------------QDT----------------G---------EFPE--------------DVRN 157 (338)
T ss_dssp HHTSSSSS---C-----------------C-----------------------------CCH--------------HHHH
T ss_pred Ccccccch---h-----------------hhh----------------h---------hhhh--------------hHHH
Confidence 11000000 0 000 0 0000 0111
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH------HHHHHHHHHHHH
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP------EYWIRYVLCMEA 402 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~------e~W~~~a~~l~~ 402 (1169)
.+++++..|++++.. .......+.....|..++..+...|++++|+..|++++..++... .+|..++.++..
T Consensus 158 ~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 158 ALQAAVDLYEENLSL--VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 234444444444430 000001234456788888888999999999999999998865433 389999999999
Q ss_pred cCChHHHHHHHHHHHHHhhccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRL------PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHANME 470 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~------~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a~~e 470 (1169)
.|++++|...|++++.+. +.. ..++..++.++...|++++|+..|+++ +++.+. ...++..++.++
T Consensus 236 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 236 LGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHhcCCcHHHHHHHHHHHHHH
Confidence 999999999999999887 333 678888999999999999999999997 444332 245789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhh
Q 001060 471 RRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
.+.|++++|..+|++++.+.+
T Consensus 314 ~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 314 TALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHC--
T ss_pred HHcCChHHHHHHHHHHHHHHH
Confidence 999999999999999999864
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=7e-15 Score=160.16 Aligned_cols=207 Identities=8% Similarity=-0.020 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 395 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~ 395 (1169)
....+..+|...+++++|+..|+++++ +++.....|..++..+...|++++|+.+|++++...|.+..+|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALE--------IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 445556788889999999999999998 567778999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH--HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 396 YVLCMEASGSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
++.++...|++++|+.+|++++. .. +....+|+.++.++...|++++|+.+|+++ +++.|.+..+|+.++.++...
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMKKPAQAKEYFEKS-LRLNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999998 55 677899999999999999999999999998 788999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHH
Q 001060 474 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 539 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~ 539 (1169)
|++++|..+|++++...+. .+..+..++.++.. .|++++|+.+++++++..|++..++.
T Consensus 189 g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQ------NARSLLLGIRLAKV-FEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCC------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999998753 25677778888776 99999999999999999999987664
No 63
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=7.8e-16 Score=152.75 Aligned_cols=84 Identities=20% Similarity=0.393 Sum_probs=76.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|++|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKI-VCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEE-EEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35689999999999999999999999999999875 56777899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987643
No 64
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=2.4e-14 Score=152.16 Aligned_cols=209 Identities=12% Similarity=0.034 Sum_probs=187.8
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
.+.....|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++... |++..+|+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 466788999999999999999999999999999999999999999999999999999999999999987 8899999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001060 432 ARFKEQN-GDIDGARAAYQLVHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 508 (1169)
Q Consensus 432 a~~~e~~-g~~~~A~~~~~~a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~ 508 (1169)
+.++... |++++|+.+|+++ ++ ..|....+|..++.++...|++++|+.+|++++...+. .+.++..++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~ 155 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKA-LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELAR 155 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH-HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH-HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHH
Confidence 9999999 9999999999998 66 57788999999999999999999999999999998753 2668888998
Q ss_pred HHHHHhCCHHHHHHHHHHHhhhcC-CCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 509 FLHLVSRNAEKARQILVDSLDHVQ-LSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 509 ~~~~~~g~~e~Ar~i~~kAl~~~p-~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
++.. .|++++|+.+|+++++..| .+...+...+.+....+. .+.+..+++.++...|+++
T Consensus 156 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 156 TKML-AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHH-HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCCCH
Confidence 8877 9999999999999999999 999888877778777776 4557778888777766654
No 65
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=147.03 Aligned_cols=80 Identities=20% Similarity=0.423 Sum_probs=75.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||+++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKL-IRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEe-eecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5789999999999999999999999999999875 66888999999999999999999999976 999999999999999
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 86
No 66
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=2.8e-15 Score=161.82 Aligned_cols=205 Identities=8% Similarity=-0.002 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|...+..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++... |+...+|+.++.++
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 45677778888889999999999999999999999999999999999999999999999999987 78999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001060 436 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 515 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g 515 (1169)
...|++++|+.+|+++ +++.|.+..+|..++.++.+.|++++|+.+|++++...+. .+.++..++.++.. .|
T Consensus 102 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~~ 173 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKA-LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------DTEARFQFGMCLAN-EG 173 (243)
T ss_dssp HHTTCHHHHHHHHHHH-HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-HT
T ss_pred HHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHH-cC
Confidence 9999999999999998 7889999999999999999999999999999999998753 26688889988877 99
Q ss_pred CHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 516 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 516 ~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
++++|+.+|+++++..|++..+|..++.+....++ .+.+..+|++++...+++.
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcchH
Confidence 99999999999999999999999988888888877 4557889999999887664
No 67
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=9e-15 Score=164.39 Aligned_cols=272 Identities=7% Similarity=0.010 Sum_probs=182.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEFPLC-YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRL 192 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~P~~-~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~ 192 (1169)
.|++.+|+..++++....|.+ .+....++..++..|+++.|+..++.. .|.+...+..++.++. ..++.++|++.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~-~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLA-SHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHH-CSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHc-CCCcHHHHHHH
Confidence 357777777777777666665 356666777777788887777766552 3445555666666666 56777777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHH
Q 001060 193 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVA 272 (1169)
Q Consensus 193 ~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~ 272 (1169)
|++++.. +.++....+|..........|+++.|..+|++ | .+..
T Consensus 88 l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~-~~~~------------------------------ 131 (291)
T 3mkr_A 88 LDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----G-DSLE------------------------------ 131 (291)
T ss_dssp HHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----C-CSHH------------------------------
T ss_pred HHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----C-CCHH------------------------------
Confidence 7777762 22344566676766766777777777776655 1 1111
Q ss_pred HhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCC
Q 001060 273 VAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 352 (1169)
Q Consensus 273 ~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~ 352 (1169)
.+..+..+|...+++++|+..|+++++ ++
T Consensus 132 -------------------------------------------~~~~l~~~~~~~g~~~~A~~~l~~~~~--------~~ 160 (291)
T 3mkr_A 132 -------------------------------------------CMAMTVQILLKLDRLDLARKELKKMQD--------QD 160 (291)
T ss_dssp -------------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH--------HC
T ss_pred -------------------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHh--------hC
Confidence 111223355566667777777777766 33
Q ss_pred hhcHHHH--HHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 353 VTELENW--HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 353 ~~~~~~W--~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
|...... ..++.+....|++++|+.+|++++..+|.++.+|..++.++...|++++|..+|++++.+. |+++.+|..
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~ 239 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLIN 239 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3333211 2233444456788888888888888888888888888888888888888888888888877 788888888
Q ss_pred HHHHHHHcCCHHH-HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001060 431 AARFKEQNGDIDG-ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 482 (1169)
Q Consensus 431 ~a~~~e~~g~~~~-A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~i 482 (1169)
++.++...|+.++ +..+++++ ++++|+++.+. ++..+.+.|+++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~-~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQL-KDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH-HHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH-HHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 8888888888865 56777887 77888887653 233333444444433
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=2.7e-14 Score=151.78 Aligned_cols=206 Identities=12% Similarity=0.039 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
+..+...|...+++++++..|+++++ ++|.....|..++..+...|++++|+.+|++++..+|.+..+|..+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALK--------SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH--------hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34456778889999999999999998 5777788999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CChHHHHHHHHHHHH--HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 397 VLCMEAS-GSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 397 a~~l~~~-g~~e~A~~vl~rAl~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
+.++... |++++|+.+|+++++ .. +....+|+.++.++...|++++|+..|+++ ++..|.+..+|..++.++.+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTY-PTPYIANLNKGICSAKQGQFGLAEAYLKRS-LAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTC-SCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHc
Confidence 9999999 999999999999998 33 455789999999999999999999999998 788999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhh-CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHH
Q 001060 474 GNLEDAFSLYEQAIAIEK-GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 539 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~-~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~ 539 (1169)
|++++|..+|++++...| . .+..+...+.++.. .|+.++|..+++.+++..|++..+..
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVL------QADDLLLGWKIAKA-LGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999885 3 24566556666555 99999999999999999999987664
No 69
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.65 E-value=3e-16 Score=163.94 Aligned_cols=121 Identities=16% Similarity=0.231 Sum_probs=97.5
Q ss_pred cchhHhHHHHHHHHhhhhCcccccccccCCceEEEEcCCcc---------------c-----------------------
Q 001060 720 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST---------------E----------------------- 761 (1169)
Q Consensus 720 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~---------------~----------------------- 761 (1169)
..+|+..||++||++++++|..|..||+++|.|+ |.++.. .
T Consensus 13 ~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS-~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~ 91 (219)
T 1q40_B 13 SRNLATNFIANYLKLWDANRSELMILYQNESQFS-MQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMA 91 (219)
T ss_dssp CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEE-EEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHhhccccEEE-EEecCCCCccccccccccccccchhhhhhhccchhcccchhhhhh
Confidence 3569999999999999999999999999987665 443211 0
Q ss_pred -chhhHHHHHHHHhcCCCcceeE------eeeeccccC-CCceEEEEEEEEEecCc------------------------
Q 001060 762 -SASSMLDIHSLVISLNFTAIEI------KTINSLGSW-NGGVLVMVSGSVKTKEF------------------------ 809 (1169)
Q Consensus 762 -~~~~~~~I~~~~~~l~~~~~~i------~~~d~q~~~-~~~ilv~v~G~~~~~~~------------------------ 809 (1169)
...|.++|.++|.+||.+.+.| .++|||+.. .+||||+|+|.+...+.
T Consensus 92 ~l~~G~~~I~~~l~~LPkT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (219)
T 1q40_B 92 KLSIGQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGP 171 (219)
T ss_dssp TCEEHHHHHHHHHHTSCEEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSSSSS
T ss_pred hhccCHHHHHHHHHHCCCeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCcccccccccccccccccccccccc
Confidence 3457889999999999888888 599999432 47899999999976432
Q ss_pred ------cccceeEEEEEEEee-CCeEEEEcceEEeccCC
Q 001060 810 ------CRRRKFVQTFFLAPQ-EKGYFVLNDIFHFLDEE 841 (1169)
Q Consensus 810 ------~~~~~F~q~F~L~~~-~~~y~v~nDifr~~~~~ 841 (1169)
...|.|+|||+|.|. +++|+|.||+||+-...
T Consensus 172 ~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~~ 210 (219)
T 1q40_B 172 KHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYT 210 (219)
T ss_dssp CCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECC
T ss_pred ccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecCC
Confidence 258999999999998 57999999999987643
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=5.9e-15 Score=177.86 Aligned_cols=207 Identities=12% Similarity=0.026 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCh
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF-NKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 406 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~-~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~ 406 (1169)
+++++++..+++.+. ..+.....|..++..+...|++ ++|+..|+++|..+|.+.++|+.++.++...|++
T Consensus 82 ~~~~~al~~l~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 82 EEMEKTLQQMEEVLG--------SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHHT--------TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhc--------cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 456667777877766 5667889999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc----
Q 001060 407 DLAHNALARATHVFVKRLPEIHLFAARFKEQN---------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---- 473 (1169)
Q Consensus 407 e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~---------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---- 473 (1169)
++|+.+|++++++. |+ ..+|..++.++... |++++|+..|+++ ++++|++..+|..++.++...
T Consensus 154 ~~A~~~~~~al~~~-p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 154 TSAHTCFSGALTHC-KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA-VQMDVLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHTTC-CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhC-CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999987 66 79999999999999 9999999999998 889999999999999999999
Q ss_pred ----CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC
Q 001060 474 ----GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549 (1169)
Q Consensus 474 ----g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~ 549 (1169)
|++++|+.+|++++.+.|. ....+.+|..++.++.. .|++++|+..|+++++..|++...|..+..+...++
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKY-EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999752 01347899999999887 999999999999999999999988877776665543
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=2.5e-14 Score=148.18 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRY 396 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~ 396 (1169)
...++.+|...+++++|+..|+++|+ ++|.+...|..++..+.+.|++++++..+++++...+.+..+|..+
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLK--------ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL 79 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 34567889999999999999999999 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
+.++...++++.|...+.+++.+. |++..+|..+|.++.+.|++++|+..|+++ ++++|.+..+|+.++.++.++|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKT-ISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHH-HHhcchhhhHHHHHHHHHHHCCCH
Confidence 999999999999999999999987 899999999999999999999999999998 889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 001060 477 EDAFSLYEQAIAIEK 491 (1169)
Q Consensus 477 e~A~~iy~~Al~~~~ 491 (1169)
++|+..|++||+..|
T Consensus 158 ~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 158 DEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999999986
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=9.9e-15 Score=175.87 Aligned_cols=222 Identities=13% Similarity=0.045 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM-DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 194 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~-e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~e 194 (1169)
.++++...++..+...|.+..+|..++..+...+++ ++|++.|+++|+..|.+.+.|..++..+. ..|++++|+..|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 567777788888888888888888888888888888 88888888888888888888888888777 6778888888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHh
Q 001060 195 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVA 274 (1169)
Q Consensus 195 rAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~ 274 (1169)
++++..+. ...|..+.. .+
T Consensus 162 ~al~~~p~----~~~~~~lg~----------------------------------~~----------------------- 180 (474)
T 4abn_A 162 GALTHCKN----KVSLQNLSM----------------------------------VL----------------------- 180 (474)
T ss_dssp HHHTTCCC----HHHHHHHHH----------------------------------HH-----------------------
T ss_pred HHHhhCCC----HHHHHHHHH----------------------------------HH-----------------------
Confidence 88763221 111111111 00
Q ss_pred hCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh
Q 001060 275 AAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT 354 (1169)
Q Consensus 275 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~ 354 (1169)
. . +..
T Consensus 181 --------------------------------------------------~-------------~-----------~~~- 185 (474)
T 4abn_A 181 --------------------------------------------------R-------------Q-----------LQT- 185 (474)
T ss_dssp --------------------------------------------------T-------------T-----------CCC-
T ss_pred --------------------------------------------------H-------------H-----------hcc-
Confidence 0 0 000
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHhhc---c
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS--------GSMDLAHNALARATHVFVK---R 423 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~--------g~~e~A~~vl~rAl~~~~p---~ 423 (1169)
....++.|++++|+..|++++..+|.+..+|+.++.++... |++++|+..|++++++. | +
T Consensus 186 --------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 256 (474)
T 4abn_A 186 --------DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASS 256 (474)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGG
T ss_pred --------CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCccc
Confidence 00112346678899999999999999999999999999988 99999999999999987 7 8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
++.+|+.+|.++...|++++|+..|+++ ++++|++..+|..++.++..+|++++|+..|.
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQA-AALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998 78999999999999999999988887776544
No 73
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=1.4e-14 Score=159.43 Aligned_cols=86 Identities=10% Similarity=-0.023 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHH
Q 001060 114 QDNIVKIRRVYDAFLAEF----PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETI 189 (1169)
Q Consensus 114 ~~~i~~Ar~~ye~~l~~~----P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~A 189 (1169)
++++++|+..|++++... |.+...|..++..+...|++++|+++|++++...|.+..+|..++.++. ..|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHH
Confidence 468899999999999874 4567889999999999999999999999999999999999988888887 78888888
Q ss_pred HHHHHHHHHhc
Q 001060 190 RRLFERGLAYV 200 (1169)
Q Consensus 190 r~~~erAl~~~ 200 (1169)
+..|++++...
T Consensus 97 ~~~~~~al~~~ 107 (275)
T 1xnf_A 97 YEAFDSVLELD 107 (275)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 88888888743
No 74
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-15 Score=139.61 Aligned_cols=84 Identities=19% Similarity=0.408 Sum_probs=77.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||++++..|+|+.|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVM-IYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEE-CCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999875 56777899999999999999999999998999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87643
No 75
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.61 E-value=6.6e-16 Score=140.96 Aligned_cols=80 Identities=24% Similarity=0.431 Sum_probs=73.4
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCC-CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~g~~l~V~~~ 1110 (1169)
++|||+|||+++|+++|+++|++|| .|++|+| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i-~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRL-MRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCS-SSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEE-EecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 6899999999999999999999999 8999875 67888999999999999999999999986 467899999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8764
No 76
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=4.2e-14 Score=166.03 Aligned_cols=285 Identities=12% Similarity=0.017 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------ccCC
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIA------CANY 389 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~-~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~------~~~~ 389 (1169)
+..+...|...+++++|+..|+++++. .|.++. ....|..++..+...|++++|+..|++++.. .+..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 335567788899999999999999982 222322 1257888899999999999999999999988 4677
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----hccChHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVF-----VKRLPEIHLFAARFKEQNGD-----------------IDGARAA 447 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~-----~p~~~~l~~~~a~~~e~~g~-----------------~~~A~~~ 447 (1169)
..+|..++.++...|++++|...|++++.+. .+....++..++.++...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 7899999999999999999999999999984 24566789999999999999 9999999
Q ss_pred HHHHhhhc------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHH
Q 001060 448 YQLVHTET------SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKAR 521 (1169)
Q Consensus 448 ~~~a~~~~------~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar 521 (1169)
|+++ +++ .+....+|..++.++...|++++|+.+|++++...+..........++..++.++.. .|++++|+
T Consensus 206 ~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~ 283 (411)
T 4a1s_A 206 YQEN-LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF-LGQFEDAA 283 (411)
T ss_dssp HHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT-TTCHHHHH
T ss_pred HHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-CcCHHHHH
Confidence 9987 333 233456899999999999999999999999999876432222233467788888776 99999999
Q ss_pred HHHHHHhhhcCCC------HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001060 522 QILVDSLDHVQLS------KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 595 (1169)
Q Consensus 522 ~i~~kAl~~~p~s------~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 595 (1169)
..|+++++..+.. ..++..++.+....++ .+.+..+|++++...+... .......++..+.......|
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQELG---DRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHHHHHhc
Confidence 9999999987644 4566677777777776 5667788888776533221 12344567888888888999
Q ss_pred CHHHHHHHHHHHHhhhCCC
Q 001060 596 DAQLIKKAEDRHARLFLPH 614 (1169)
Q Consensus 596 d~~~i~~v~~R~~~~~~~~ 614 (1169)
+.+.+...+++..+++...
T Consensus 358 ~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 358 GHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred cHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998753
No 77
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=4.4e-15 Score=174.85 Aligned_cols=84 Identities=24% Similarity=0.398 Sum_probs=76.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+.+|+++|+++|++||.|+.|.| +.++.+|+++|||||+|.+.++|.+||.. +++.|+|+.|.|+++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHM-VYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEe-eccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4689999999999999999999999999999875 55777899999999999999999999976 899999999999999
Q ss_pred cCCCCC
Q 001060 1111 RPNTGS 1116 (1169)
Q Consensus 1111 r~~~~~ 1116 (1169)
+++...
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 876543
No 78
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=7.1e-14 Score=167.31 Aligned_cols=381 Identities=12% Similarity=0.066 Sum_probs=231.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001060 104 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM---DKVVEVYERAVQGVTYSVDIWLHYCIFAI 180 (1169)
Q Consensus 104 ~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~---e~A~~l~eraL~~~P~s~~lw~~y~~~~~ 180 (1169)
.|+..+.+ .+++++|.++|++++.. .+...+..++.++...|.. ++|+..|++++.. +.+.++.++.++.
T Consensus 8 ~la~~~~~--~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALK--RGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHH
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 45555555 46899999999998876 4667788888888888877 8999999999876 6677777777444
Q ss_pred hhc----CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhH---HHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Q 001060 181 NTY----GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW---SRVAMIYTRILENPIQQLDRYFSSFKEFAA 253 (1169)
Q Consensus 181 ~~~----~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~---~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~ 253 (1169)
... +++++|...|+++++. |. .. .+..+..+....+.. ..+...|.++.... +....+.....+..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-g~-~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-GE-GN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-TC-SS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-CC-HH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHc
Confidence 122 2678899999999883 22 11 233333333333332 23444444444321 11122222222211
Q ss_pred cCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH---HH
Q 001060 254 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK---EF 330 (1169)
Q Consensus 254 ~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~---~~ 330 (1169)
......- .+++..+.... ..+. .. .+..+..+|...+ ++
T Consensus 154 ~~~~~~~--~~~a~~~~~~a-------------~~~~-----------------~~------a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 154 QGTYDQH--LDDVERICKAA-------------LNTT-----------------DI------CYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp HTCGGGG--HHHHHHHHHHH-------------TTTC-----------------TT------HHHHHHHHHHHTTCHHHH
T ss_pred CCCcccC--HHHHHHHHHHH-------------HcCC-----------------HH------HHHHHHHHHHHcCCcccH
Confidence 1111100 01111000000 0000 00 2233455666676 89
Q ss_pred HHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhccCCHHHHHHHHHH-H--HHc
Q 001060 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD----GDFNKVVKLYERCLIACANYPEYWIRYVLC-M--EAS 403 (1169)
Q Consensus 331 ~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~----gd~~~a~~lyeraL~~~~~~~e~W~~~a~~-l--~~~ 403 (1169)
++++..|++++. .++.....|..++.++... +++++|+.+|+++. +.+++.|+.++.+ + ...
T Consensus 196 ~~A~~~~~~aa~--------~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 196 AELLKQMEAGVS--------RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp HHHHHHHHHHHH--------TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHH--------CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCC
Confidence 999999999998 5667777778888887655 79999999999998 8999999999997 4 457
Q ss_pred CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH----cC
Q 001060 404 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG-----DIDGARAAYQLVHTETSPGLLEAIIKHANMERR----LG 474 (1169)
Q Consensus 404 g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g-----~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g 474 (1169)
+++++|+..|+++++ ..++..++.++.++. .| ++++|+..|+++ . +++..+++.++.++.. ..
T Consensus 265 ~d~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A-a---~g~~~A~~~Lg~~y~~G~g~~~ 336 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRA---ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA-V---GREVAADYYLGQIYRRGYLGKV 336 (452)
T ss_dssp CCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT-T---TTCHHHHHHHHHHHHTTTTSSC
T ss_pred CCHHHHHHHHHHHHH---CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH-h---CCCHHHHHHHHHHHHCCCCCCc
Confidence 899999999999986 458999999999998 55 999999999998 3 8999999999988876 34
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCCh
Q 001060 475 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 551 (1169)
Q Consensus 475 ~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~ 551 (1169)
++++|+..|+++.+... +.....++.++.. +..++++|...|++|.+.-... -...+..+...+ ++
T Consensus 337 d~~~A~~~~~~Aa~~g~--------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~-~~ 405 (452)
T 3e4b_A 337 YPQKALDHLLTAARNGQ--------NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPL-TP 405 (452)
T ss_dssp CHHHHHHHHHHHHTTTC--------TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTC-CH
T ss_pred CHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhC-CH
Confidence 89999999999998642 2355566666443 2348999999999999865433 333344444443 34
Q ss_pred hHHHHHHHHHHHHhh
Q 001060 552 KQIDFLEQLVDKFLM 566 (1169)
Q Consensus 552 ~~~~~~r~l~eral~ 566 (1169)
.++..++.+.++...
T Consensus 406 ~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 406 AQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554433
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.60 E-value=6.7e-14 Score=150.45 Aligned_cols=180 Identities=11% Similarity=0.015 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACA-NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~-~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
.+.|...+..+...|++++|+..|++++...| .+..+|+.++.++...|++++|+..|+++++.. |++..+|+.+|.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 47899999999999999999999999999998 899999999999999999999999999999987 8899999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc--hHHHHHH
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGLL-------EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT--LPMLYAQ 505 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~~-------~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~--~~~l~~~ 505 (1169)
+...|++++|+..|+++ +++.|++. .+|+.++.++...|++++|+..|+++++..| . .+..|..
T Consensus 86 ~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~~ 158 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEG-IKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS------KKWKTDALYS 158 (228)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC------HHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHH-HHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC------CcccHHHHHH
Confidence 99999999999999998 78899988 6699999999999999999999999999874 3 4667777
Q ss_pred HHHHHHHHhCCH---------------------------HHHHHHHHHHhhhcCCCHHHHHHHHHh
Q 001060 506 YSRFLHLVSRNA---------------------------EKARQILVDSLDHVQLSKPLLEALIHF 544 (1169)
Q Consensus 506 ~a~~~~~~~g~~---------------------------e~Ar~i~~kAl~~~p~s~~l~~~~a~~ 544 (1169)
++.+++. .|+. ++|+..|+++++..|++..++..+..+
T Consensus 159 l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYN-NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7777655 5544 666666666666666666555544443
No 80
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.6e-15 Score=137.26 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=75.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHY-PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-EecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5699999999999999999999999999999865 55666899999999999999999999965 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 88654
No 81
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=2.3e-13 Score=149.65 Aligned_cols=227 Identities=10% Similarity=-0.009 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCC-ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPL-SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGS 405 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl-~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~ 405 (1169)
.+++++++..|+++++. .+. ++.....|..++..+...|++++|+..|++++...|.+..+|..++.++...|+
T Consensus 18 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 18 TLQQEVILARMEQILAS-----RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CHHHHHHHHHHHHHHTS-----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHhc-----ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 46788999999999983 112 357788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 406 MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 485 (1169)
Q Consensus 406 ~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~ 485 (1169)
+++|+..|++++++. |++..+|+.++.++...|++++|+.+|+++ +++.|++...+.... +....|++++|+.+|++
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAF-YQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHH
Confidence 999999999999987 889999999999999999999999999998 788999876555444 44667999999999999
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC----HHHHHHHHHhHhhCCChhHHHHHHHHH
Q 001060 486 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS----KPLLEALIHFESIQSSPKQIDFLEQLV 561 (1169)
Q Consensus 486 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s----~~l~~~~a~~E~~~~~~~~~~~~r~l~ 561 (1169)
++...+.. ...+ ..+.+... .++.++|...++++++..|.. ..+|..++.+....++ .+.+..+|
T Consensus 170 ~~~~~~~~------~~~~-~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~ 238 (275)
T 1xnf_A 170 HFEKSDKE------QWGW-NIVEFYLG-NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALF 238 (275)
T ss_dssp HHHHSCCC------STHH-HHHHHHTT-SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHhcCCcc------hHHH-HHHHHHHH-hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 99987642 1133 24444444 778899999999999887643 5777788888888777 66789999
Q ss_pred HHHhhcCCCCC
Q 001060 562 DKFLMSNSDSP 572 (1169)
Q Consensus 562 eral~~~~~~~ 572 (1169)
++++...|++.
T Consensus 239 ~~al~~~p~~~ 249 (275)
T 1xnf_A 239 KLAVANNVHNF 249 (275)
T ss_dssp HHHHTTCCTTC
T ss_pred HHHHhCCchhH
Confidence 99999877553
No 82
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-14 Score=139.75 Aligned_cols=85 Identities=20% Similarity=0.352 Sum_probs=75.5
Q ss_pred CCCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEE
Q 001060 1029 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108 (1169)
Q Consensus 1029 ~~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~ 1108 (1169)
.+.+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+++++|||||+|.+.++|.+||+.....|+|+.|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV-ITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-SCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 3446799999999999999999999999999999875 567778999999999999999999999884339999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
++++..
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997653
No 83
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.3e-15 Score=137.15 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=75.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeee-eEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPD-GVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~-~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++++|||+|||.++++++|+++|++||.|..+ .| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI-MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEE-CCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE-EEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45899999999999999999999999999998 65 56778899999999999999999999995 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987643
No 84
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=3.7e-15 Score=140.95 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=74.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++++++|+++|++||.|.+|.| ++++.+|+++|||||+|++.++|.+||+. |+..|+|+.|+|+.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i-~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEI-LLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEE-EECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4589999999999999999999999999999876 56888899999999999999999999986 999999999999998
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
+.
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.59 E-value=1.9e-14 Score=180.76 Aligned_cols=174 Identities=15% Similarity=0.256 Sum_probs=160.5
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
..|.+.+.|..++..+.+.|++++|+..|+++|...|.+.++|..++.++.++|++++|+..|++|+++. |++..+|+.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3577889999999999999999999999999999999999999999999999999999999999999987 899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 510 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~ 510 (1169)
+|.++.+.|++++|++.|+++ ++++|++..+|..++.++.++|++++|+..|++|+++.|+ .+.+|.+++..+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kA-l~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~------~~~a~~~L~~~l 155 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRA-IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD------FPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHhhhhhHH
Confidence 999999999999999999998 8899999999999999999999999999999999999864 377899999888
Q ss_pred HHHhCCHHHHHHHHHHHhhhcCC
Q 001060 511 HLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 511 ~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
.. .|++++|.+.|++++++.|+
T Consensus 156 ~~-~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 156 QI-VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HH-TTCCTTHHHHHHHHHHHHHH
T ss_pred Hh-cccHHHHHHHHHHHHHhChh
Confidence 77 99999999999999987653
No 86
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.8e-15 Score=135.99 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVL-MKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-ECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-eecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4589999999999999999999999999999875 56777899999999999999999999985 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87643
No 87
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.8e-15 Score=142.09 Aligned_cols=83 Identities=18% Similarity=0.353 Sum_probs=76.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVV-MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEE-ECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 35689999999999999999999999999999875 56777899999999999999999999998999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 8764
No 88
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.58 E-value=3.1e-12 Score=162.94 Aligned_cols=362 Identities=11% Similarity=0.069 Sum_probs=235.2
Q ss_pred CCCchHHHHHHHHHHhCCC----CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q 001060 79 PAMSGEEDRLWNIVKANSS----DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKV 154 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~----d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A 154 (1169)
+....+++.|++++ .+|. +.+.=..|+...-+. ++.+...+.+++= ++. ....|.++...|.+++|
T Consensus 999 glp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd-----~~d-~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 999 DLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLD-----NYD-APDIANIAISNELFEEA 1068 (1630)
T ss_pred CCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhh-----hcc-HHHHHHHHHhCCCHHHH
Confidence 44568899999999 4454 333333355544443 3333333333322 111 34578888889999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001060 155 VEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 234 (1169)
Q Consensus 155 ~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L 234 (1169)
..+|+++-. +...+..+.+..+++++|.++++|+ ....+|..|++..+..|++++|+..|.++
T Consensus 1069 f~IYkKa~~--------~~~A~~VLie~i~nldrAiE~Aerv--------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1069 FAIFRKFDV--------NTSAVQVLIEHIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHcCC--------HHHHHHHHHHHHhhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 999999742 1122222233556777777777755 25678999999888899999999999876
Q ss_pred hcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001060 235 ENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 314 (1169)
Q Consensus 235 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 314 (1169)
++.+.+++....+.... ..+++............+ + ..+.
T Consensus 1132 ----dD~say~eVa~~~~~lG------kyEEAIeyL~mArk~~~e----------------------~----~Idt---- 1171 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSG------NWEELVKYLQMARKKARE----------------------S----YVET---- 1171 (1630)
T ss_pred ----CChHHHHHHHHHHHHcC------CHHHHHHHHHHHHhhccc----------------------c----cccH----
Confidence 33344444333332221 223332211100000000 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWI 394 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~ 394 (1169)
.....|.+.++++. + +..|+ ..+...|...++.+.+.|+++.|+.+|.+| ..|.
T Consensus 1172 ----~LafaYAKl~rlee-l---e~fI~----------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~ 1225 (1630)
T 1xi4_A 1172 ----ELIFALAKTNRLAE-L---EEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFG 1225 (1630)
T ss_pred ----HHHHHHHhhcCHHH-H---HHHHh----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHH
Confidence 02334555555542 3 33333 123467888999999999999999999996 5899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC
Q 001060 395 RYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG 474 (1169)
Q Consensus 395 ~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g 474 (1169)
+++.+|.+.|++++|.+++++| ++...|...+......|++..|+.+... +..+|+. +...+.++.+.|
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~de---Leeli~yYe~~G 1294 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADE---LEELINYYQDRG 1294 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHH---HHHHHHHHHHcC
Confidence 9999999999999999999988 3568999999888889999999988765 2335544 447788889999
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHhhhcC-----CCHHHHHHHHHhHhhC
Q 001060 475 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL-VSRNAEKARQILVDSLDHVQ-----LSKPLLEALIHFESIQ 548 (1169)
Q Consensus 475 ~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~-~~g~~e~Ar~i~~kAl~~~p-----~s~~l~~~~a~~E~~~ 548 (1169)
.+++|+.+|+.+|.+++. +..+|..++.++.+ .-+++.++.++|...+.+.+ ....+|..++.+-...
T Consensus 1295 ~feEAI~LlE~aL~Lera------H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLERA------HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred CHHHHHHHHHHHhccChh------HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998742 23344333333222 25578888999998888777 6778998888887776
Q ss_pred CC
Q 001060 549 SS 550 (1169)
Q Consensus 549 ~~ 550 (1169)
++
T Consensus 1369 ~e 1370 (1630)
T 1xi4_A 1369 EE 1370 (1630)
T ss_pred cc
Confidence 65
No 89
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=1.1e-14 Score=136.42 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=74.9
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++++++|+++|++|| |..|.| ++++.+|+++|||||+|.+.++|.+||.+++..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRL-VRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEE-eecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 3569999999999999999999999997 999875 56777899999999999999999999966999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=4.4e-15 Score=144.64 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=76.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.++++|||+|||+++|+++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL-NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35699999999999999999999999999999864 55667899999999999999999999975 99999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 987643
No 91
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.58 E-value=1.5e-14 Score=138.35 Aligned_cols=84 Identities=19% Similarity=0.434 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKV-FIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEE-EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999875 55777899999999999999999999966 99999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987643
No 92
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=6.7e-13 Score=158.80 Aligned_cols=381 Identities=9% Similarity=-0.002 Sum_probs=234.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCH---HHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001060 139 KKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDP---ETIRRLFERGLAYVGTDYLSFPLWDKYIE 215 (1169)
Q Consensus 139 ~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~---e~Ar~~~erAl~~~g~d~~s~~lw~~y~~ 215 (1169)
..++....+.|++++|+++|++++.. .+.+.++.++.++. ..|+. ++|+..|+++++. ++. .+..+..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~-~~g~~~d~~~A~~~~~~A~~~---~~~---A~~~Lg~ 77 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQV-GTRDPAQIKQAEATYRAAADT---SPR---AQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-----------------------------------CHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-ccCCCCCHHHHHHHHHHHHhC---CHH---HHHHHHH
Confidence 45788889999999999999999876 57788888887776 56776 9999999999974 322 2333344
Q ss_pred HHHHh-----hhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCC-CccccCHHHHHHHHHHHhhCCCccchhhhcccc
Q 001060 216 YEYMQ-----QEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRP-LSELRTAEEVDAAAVAVAAAPSETGAEVKANEE 289 (1169)
Q Consensus 216 ~e~~~-----~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~ 289 (1169)
+.... +++++|...|++++..... ..++.....+..... .... ...+... . ...
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~--~A~~~Lg~~y~~~~~~~~~~-~a~~~~~--~--------a~~------- 137 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEG--NTLIPLAMLYLQYPHSFPNV-NAQQQIS--Q--------WQA------- 137 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCS--SCHHHHHHHHHHCGGGCTTC-CHHHHHH--H--------HHH-------
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCCCCCCH-HHHHHHH--H--------HHH-------
Confidence 22222 4889999999999986221 122222222211110 0000 0000000 0 000
Q ss_pred ccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccCCcccCCCChhcHHHHHHHHHH
Q 001060 290 EVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFD----SKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 365 (1169)
Q Consensus 290 ~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~----~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~ 365 (1169)
.+.. .....+..+|...+.++ .+...++.+.. .+ ...+..++..
T Consensus 138 ---------------~g~~------~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--------~~---~~a~~~Lg~~ 185 (452)
T 3e4b_A 138 ---------------AGYP------EAGLAQVLLYRTQGTYDQHLDDVERICKAALN--------TT---DICYVELATV 185 (452)
T ss_dssp ---------------HTCT------THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--------TC---TTHHHHHHHH
T ss_pred ---------------CCCH------HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--------CC---HHHHHHHHHH
Confidence 0000 02223345566555333 33334444433 23 2378889988
Q ss_pred HHHcC---ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHhhccChHHHHHHHHH-H--
Q 001060 366 IERDG---DFNKVVKLYERCLIACANYPEYWIRYVLCMEAS----GSMDLAHNALARATHVFVKRLPEIHLFAARF-K-- 435 (1169)
Q Consensus 366 ~~~~g---d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~----g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~-~-- 435 (1169)
+...| ++++++.+|++++...+.....|+.++.++... +++++|+..|+++. +.++..++.++.+ +
T Consensus 186 ~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 186 YQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDF 261 (452)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHS
T ss_pred HHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhC
Confidence 88899 899999999999999999999999999988654 68999999999987 6789999999998 4
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001060 436 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-----NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 510 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g-----~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~ 510 (1169)
...+++++|+..|+++ . ..++...++.++.++. .| ++++|+..|++|+ ++ .+..+..++.++
T Consensus 262 ~~~~d~~~A~~~~~~A-a--~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g------~~~A~~~Lg~~y 328 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNG-R--AADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR------EVAADYYLGQIY 328 (452)
T ss_dssp GGGCCHHHHHHHHHHH-H--HTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT------CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-H--HCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC------CHHHHHHHHHHH
Confidence 4689999999999998 3 4568889999999887 56 9999999999999 22 156777787664
Q ss_pred HHH---hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH
Q 001060 511 HLV---SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVF 587 (1169)
Q Consensus 511 ~~~---~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~ 587 (1169)
..- ..++++|+..|++|.+.......+....+. +...+.+.+.+.+...|+++...+.. -....
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y-~~G~g~~~d~~~A~~~~~~A~~~g~~------------~a~~~ 395 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLF-SQGKGTKPDPLNAYVFSQLAKAQDTP------------EANDL 395 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHH-HSCTTBCCCHHHHHHHHHHHHTTCCH------------HHHHH
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHHCCCH------------HHHHH
Confidence 431 228999999999999865544444444433 33344444567788899999876421 12233
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhh
Q 001060 588 LEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 588 l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
+......-+.+.+.+..+...+.
T Consensus 396 l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 396 ATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Confidence 33334444555555555555443
No 93
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=136.48 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=77.3
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYL-AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-eecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 346799999999999999999999999999999875 56777899999999999999999999985 8999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9988654
No 94
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=138.89 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=73.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLL-IKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEE-ECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 5689999999999999999999999999999875 4444 899999999999999999999986 899999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8754
No 95
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.57 E-value=7.3e-12 Score=159.54 Aligned_cols=400 Identities=9% Similarity=-0.047 Sum_probs=260.9
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL----CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~----~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 172 (1169)
.|.+-=...++.+.. .|...+|+.+||+++ ..|. +..+-..++..-++. +..+..+...+.=.. + .
T Consensus 983 ~~PeeVs~~vKaf~~--aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d----~ 1052 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMT--ADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D----A 1052 (1630)
T ss_pred cCHHHhHHHHHHHHh--CCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c----H
Confidence 344444577777766 469999999999999 4454 444444566555555 445555555444321 1 2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 001060 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 252 (1169)
Q Consensus 173 ~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~ 252 (1169)
...+..+. ..+.+++|..+|+++-. .......| ....+++++|.+++.|+ +....|+...+.+.
T Consensus 1053 ~eIA~Iai-~lglyEEAf~IYkKa~~-------~~~A~~VL---ie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1053 PDIANIAI-SNELFEEAFAIFRKFDV-------NTSAVQVL---IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHcCC-------HHHHHHHH---HHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHH
Confidence 23445555 68999999999999732 11112222 33678899999999987 22233444444332
Q ss_pred hcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001060 253 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDS 332 (1169)
Q Consensus 253 ~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ 332 (1169)
... ..++|+.+ |..- .+.+. |+ .....+.+.+++++
T Consensus 1117 ~~G------~~kEAIds----YiKA------------------------------dD~sa---y~-eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1117 QKG------MVKEAIDS----YIKA------------------------------DDPSS---YM-EVVQAANTSGNWEE 1152 (1630)
T ss_pred hCC------CHHHHHHH----HHhc------------------------------CChHH---HH-HHHHHHHHcCCHHH
Confidence 221 22344321 1110 01111 22 24567888999999
Q ss_pred HHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHH
Q 001060 333 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA 412 (1169)
Q Consensus 333 ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~v 412 (1169)
+++.|..+++. ......+.+ ++..+.+.++++. +..| + . ..+..-|..+|.+++..|++++|..+
T Consensus 1153 AIeyL~mArk~-------~~e~~Idt~--LafaYAKl~rlee-le~f---I-~-~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1153 LVKYLQMARKK-------ARESYVETE--LIFALAKTNRLAE-LEEF---I-N-GPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred HHHHHHHHHhh-------cccccccHH--HHHHHHhhcCHHH-HHHH---H-h-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999998872 111123333 4445556677664 2233 3 2 33456778899999999999999999
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 413 LARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 413 l~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
|.+| ..|..++..+.+.|++++|.++++++ .+..+|...+......|++..|+.+... +...
T Consensus 1218 Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~-- 1279 (1630)
T 1xi4_A 1218 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH-- 1279 (1630)
T ss_pred HHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC--
Confidence 9886 36888999999999999999999997 3468999999998889999999988764 4333
Q ss_pred CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 493 KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 493 ~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
++.+..++.++.. .|.+++|+.+|+.+|.+++.+..+|..++.+..... ++.+-...++|...+...
T Consensus 1280 -------~deLeeli~yYe~-~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~-peklmEhlk~f~~rini~---- 1346 (1630)
T 1xi4_A 1280 -------ADELEELINYYQD-RGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIP---- 1346 (1630)
T ss_pred -------HHHHHHHHHHHHH-cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC-HHHHHHHHHHHHHhcccc----
Confidence 3445566667655 999999999999999999999999988888887765 333322233444333321
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH-HhhhC
Q 001060 573 STANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH-ARLFL 612 (1169)
Q Consensus 573 ~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~-~~~~~ 612 (1169)
-.++.-....+|..+.....++|+.+.+..+--.| ...|.
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~ 1387 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 1387 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhh
Confidence 12344456679999999999999977665433333 34443
No 96
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=136.57 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=75.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5689999999999999999999999999999875 55667899999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 87643
No 97
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=1.3e-12 Score=144.52 Aligned_cols=234 Identities=6% Similarity=-0.043 Sum_probs=151.9
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhccCCCHH
Q 001060 95 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEVYERAVQGVTYSVD 170 (1169)
Q Consensus 95 nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l~eraL~~~P~s~~ 170 (1169)
+|.+.++|..|+..+... +++++|..+|++++. |.+...|..++.++.. .+++++|++.|++++... +..
T Consensus 2 ~~~~~~a~~~lg~~~~~~--~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~ 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKE--KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred CCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH
Confidence 577888888888888774 588888888888888 7778888888888888 888888888888888863 788
Q ss_pred HHHHHHHHHHhh----cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcchhhHH
Q 001060 171 IWLHYCIFAINT----YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM----QQEWSRVAMIYTRILENPIQQLD 242 (1169)
Q Consensus 171 lw~~y~~~~~~~----~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~----~~~~~~a~~iY~r~L~~p~~~~~ 242 (1169)
.|..++.++. . .+++++|+..|+++++. + ....|..+..+... .+++++|...|
T Consensus 76 a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~-~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~------------ 137 (273)
T 1ouv_A 76 GCHLLGNLYY-SGQGVSQNTNKALQYYSKACDL-K----YAEGCASLGGIYHDGKVVTRDFKKAVEYF------------ 137 (273)
T ss_dssp HHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHH------------
T ss_pred HHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHc-C----CccHHHHHHHHHHcCCCcccCHHHHHHHH------------
Confidence 8888888777 5 77888888888888873 1 23334444433333 33344443333
Q ss_pred HHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHH
Q 001060 243 RYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE 322 (1169)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~ 322 (1169)
T Consensus 138 -------------------------------------------------------------------------------- 137 (273)
T 1ouv_A 138 -------------------------------------------------------------------------------- 137 (273)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER----DGDFNKVVKLYERCLIACANYPEYWIRYVL 398 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~----~gd~~~a~~lyeraL~~~~~~~e~W~~~a~ 398 (1169)
+++++ ++ ....|..++.++.. .+++++|+.+|++++.. .++..|+.++.
T Consensus 138 ---------------~~a~~--------~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 190 (273)
T 1ouv_A 138 ---------------TKACD--------LN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGN 190 (273)
T ss_dssp ---------------HHHHH--------TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ---------------HHHHh--------cC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 33333 11 12334444444444 56666666666666654 34566666666
Q ss_pred HHHH----cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCCChHHHH
Q 001060 399 CMEA----SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 399 ~l~~----~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
++.. .+++++|+..|+++++.. .+..++.++.++.. .+++++|+..|+++ .++.|.....+
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a-~~~~~~~a~~~ 259 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG-CKLGAKGACDI 259 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH-HHHTCHHHHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH-HHcCCHHHHHH
Confidence 6666 666666766666666543 35566666666666 66666666666666 45555444333
No 98
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.7e-15 Score=138.33 Aligned_cols=85 Identities=19% Similarity=0.349 Sum_probs=77.5
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||+++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..+++.|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVI-MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEE-EECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 346799999999999999999999999999999875 5677789999999999999999999998899999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 887643
No 99
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=136.32 Aligned_cols=83 Identities=24% Similarity=0.316 Sum_probs=76.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEEC-CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 5689999999999999999999999999999864 56777899999999999999999999976 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 100
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.56 E-value=3.9e-14 Score=135.47 Aligned_cols=85 Identities=28% Similarity=0.363 Sum_probs=77.2
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV-VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346799999999999999999999999999999875 56767899999999999999999999986 8999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9987654
No 101
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.1e-15 Score=136.90 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYI-PREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEC-CBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 5689999999999999999999999999999865 55777899999999999999999999985 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
++..+
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87543
No 102
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.7e-14 Score=135.38 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=73.8
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCC-cccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD-VVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~-g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||+++++++|+++|++|| |..|.| ++++.+ |+++|||||+|.+.++|.+||.+++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i-~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEEC-CBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEE-ecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 3569999999999999999999999999 999875 456665 8999999999999999999995589999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98764
No 103
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.56 E-value=9.8e-15 Score=132.09 Aligned_cols=80 Identities=16% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||+++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+||+.++..|+|+.|+|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI-KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-eecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345689999999999999999999999999999875 5677789999999999999999999999889999999999986
Q ss_pred c
Q 001060 1110 R 1110 (1169)
Q Consensus 1110 ~ 1110 (1169)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 104
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.56 E-value=5.5e-15 Score=135.50 Aligned_cols=80 Identities=10% Similarity=0.313 Sum_probs=70.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCC--eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCC----eeeceE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGR--IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPI----QLAGRQ 1104 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~--i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~----~i~g~~ 1104 (1169)
.-.+|||+|||+++|+++|+++|++||. |.+|++ ++++.+|++||||||+|.+.++|.+||+. ++. .|+||.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i-~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRL-IKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEEC-CCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEE-EecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 4478999999999999999999999996 556653 56888999999999999999999999987 553 699999
Q ss_pred EEEEeccC
Q 001060 1105 VYIEERRP 1112 (1169)
Q Consensus 1105 l~V~~~r~ 1112 (1169)
|+|++++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 105
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=2.4e-12 Score=142.36 Aligned_cols=228 Identities=10% Similarity=0.031 Sum_probs=184.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHhcCCCCCC
Q 001060 131 FPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINT----YGDPETIRRLFERGLAYVGTDYLS 206 (1169)
Q Consensus 131 ~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~----~~~~e~Ar~~~erAl~~~g~d~~s 206 (1169)
.|.+...|..++.++...+++++|++.|++++. +.+...|+.++.++. . .+++++|+..|+++++. + .
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~-~----~ 73 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDL-N----Y 73 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT-T----C
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHC-C----C
Confidence 477889999999999999999999999999998 678899999988888 6 88999999999999873 1 2
Q ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccch
Q 001060 207 FPLWDKYIEYEYM----QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGA 282 (1169)
Q Consensus 207 ~~lw~~y~~~e~~----~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~ 282 (1169)
...|..+..+... .+++
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~----------------------------------------------------------- 94 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNT----------------------------------------------------------- 94 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCH-----------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCcccCH-----------------------------------------------------------
Confidence 3334333333333 3333
Q ss_pred hhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHH
Q 001060 283 EVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY 362 (1169)
Q Consensus 283 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~y 362 (1169)
++++..|++++. . .....|..+
T Consensus 95 ------------------------------------------------~~A~~~~~~a~~--------~--~~~~a~~~l 116 (273)
T 1ouv_A 95 ------------------------------------------------NKALQYYSKACD--------L--KYAEGCASL 116 (273)
T ss_dssp ------------------------------------------------HHHHHHHHHHHH--------T--TCHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHH--------c--CCccHHHHH
Confidence 344444555554 1 134567777
Q ss_pred HHHHHH----cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 363 LDFIER----DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA----SGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 363 l~~~~~----~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~----~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
+.++.. .+++++|+.+|++++... +...|+.++.++.. .+++++|+..|+++++. .++..++.++.+
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~ 191 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHH
Confidence 777777 899999999999999865 78999999999998 89999999999999975 468899999999
Q ss_pred HHH----cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhh
Q 001060 435 KEQ----NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 435 ~e~----~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~iy~~Al~~~~ 491 (1169)
+.. .+++++|+..|+++ .+..+ ..+++.++.++.. .+++++|+..|+++++..+
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a-~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKA-CELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHH-HHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCCCccHHHHHHHHHHH-HhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 999 99999999999998 56555 7889999999998 9999999999999999875
No 106
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4e-14 Score=134.03 Aligned_cols=80 Identities=28% Similarity=0.440 Sum_probs=71.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++|+++|+++|++||.|..|.|. .+++++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK----NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEC----CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356899999999999999999999999999997652 2345889999999999999999965 89999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98753
No 107
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-14 Score=136.27 Aligned_cols=84 Identities=27% Similarity=0.343 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C------CCeeece
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S------PIQLAGR 1103 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~------~~~i~g~ 1103 (1169)
.+.++|||+|||+++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. + +..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRV-VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 35689999999999999999999999999999875 56777899999999999999999999986 7 9999999
Q ss_pred EEEEEeccCCCC
Q 001060 1104 QVYIEERRPNTG 1115 (1169)
Q Consensus 1104 ~l~V~~~r~~~~ 1115 (1169)
.|+|++++++..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987643
No 108
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=135.42 Aligned_cols=83 Identities=23% Similarity=0.442 Sum_probs=75.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| ++++.+++++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV-VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEE-CCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5689999999999999999999999999999875 56777889999999999999999999965 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87643
No 109
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=1e-14 Score=141.50 Aligned_cols=83 Identities=25% Similarity=0.398 Sum_probs=75.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITI-LCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEE-EEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 5689999999999999999999999999999875 557778999999999999999999999668999999999999998
Q ss_pred CCCC
Q 001060 1112 PNTG 1115 (1169)
Q Consensus 1112 ~~~~ 1115 (1169)
+..+
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7544
No 110
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.7e-15 Score=136.87 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=70.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++|+++|+++|++||.| .|.| ++++ +|+++|||||+|.+.++|.+||+.++..|+||.|+|..+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHI-EIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEE-EESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEE-EECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45899999999999999999999999955 7765 4455 8999999999999999999999889999999999999877
Q ss_pred CC
Q 001060 1112 PN 1113 (1169)
Q Consensus 1112 ~~ 1113 (1169)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 111
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-14 Score=136.33 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=76.2
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCee--------eeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIK--------PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1100 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~--------~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i 1100 (1169)
+.+.++|||+|||.++|+++|+++|++||.|. .|.| +.++.+|+++|||||+|.+.++|.+||+. ++..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHI-YLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEEC-CBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEE-EEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 34679999999999999999999999999998 5664 55777899999999999999999999986 99999
Q ss_pred eceEEEEEeccCCCC
Q 001060 1101 AGRQVYIEERRPNTG 1115 (1169)
Q Consensus 1101 ~g~~l~V~~~r~~~~ 1115 (1169)
+|+.|+|++++++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987643
No 112
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=130.30 Aligned_cols=81 Identities=30% Similarity=0.374 Sum_probs=73.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARV-VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4589999999999999999999999999999875 56777899999999999999999999986 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 113
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.55 E-value=4.1e-14 Score=136.03 Aligned_cols=80 Identities=21% Similarity=0.473 Sum_probs=73.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKV-FIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEE-CCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35699999999999999999999999999999875 56777899999999999999999999986 89999999999998
Q ss_pred cc
Q 001060 1110 RR 1111 (1169)
Q Consensus 1110 ~r 1111 (1169)
+|
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 114
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.54 E-value=2.4e-14 Score=128.25 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=74.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. ++..|+|+.|+|+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV-MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 68999999999999999999999999999875 56777899999999999999999999986 99999999999999987
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 115
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.54 E-value=9.1e-15 Score=132.89 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=75.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|+..++..|+|+.|+|+.++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTI-LCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEE-EESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999875 567778999999999999999999999559999999999999998
Q ss_pred CCCC
Q 001060 1112 PNTG 1115 (1169)
Q Consensus 1112 ~~~~ 1115 (1169)
++.+
T Consensus 84 ~~~p 87 (89)
T 3ucg_A 84 TNRP 87 (89)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7543
No 116
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.6e-14 Score=132.84 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=75.2
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||. +++.|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEE-EecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 35689999999999999999999999999999875 5677789999999999999999999999 578999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 87643
No 117
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.54 E-value=1.7e-14 Score=129.87 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=72.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|+++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEE-EECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5689999999999999999999999999999875 56777899999999999999999999965 999999999999987
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
|
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 118
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.3e-15 Score=136.70 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=72.8
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||+++|+++|+++|++||.|.+|.| ++++. |+++|||||+|.+.++|.+||..+++.|+|+.|.|..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i-~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEE-ECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEE-EECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999875 44554 8999999999999999999999889999999999987
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
++.
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 653
No 119
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.54 E-value=1.7e-14 Score=136.38 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.++++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+.+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEE-EECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 35689999999999999999999999999999875 56777899999999999999999999999889999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 120
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.54 E-value=2.5e-14 Score=134.70 Aligned_cols=84 Identities=14% Similarity=0.304 Sum_probs=75.5
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee---eceEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL---AGRQV 1105 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i---~g~~l 1105 (1169)
+.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..+ +|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTV-LKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEEC-CCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345699999999999999999999999999999875 56777899999999999999999999985 88887 89999
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|.+++++.
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998754
No 121
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.7e-15 Score=141.09 Aligned_cols=83 Identities=20% Similarity=0.405 Sum_probs=75.6
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.+++..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRI-ISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEE-EecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999875 5677789999999999999999999996699999999999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
++++
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8764
No 122
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.3e-14 Score=133.50 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=68.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec-----eEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG-----RQV 1105 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g-----~~l 1105 (1169)
..++|||+|||+++|+++|+++|++||.|..|.|. .+ |||||+|.+.++|.+||+. ++..|+| +.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~-~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY-RD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEE-TT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEe-cC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45899999999999999999999999999997652 22 8999999999999999986 8999999 999
Q ss_pred EEEeccCCCCC
Q 001060 1106 YIEERRPNTGS 1116 (1169)
Q Consensus 1106 ~V~~~r~~~~~ 1116 (1169)
+|++++++.+.
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999886543
No 123
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.5e-14 Score=133.87 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=76.1
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeec-CCCcccccEEEEEECCHHHHHHHHHh--CCCeeeceEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRN-RKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVY 1106 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~-~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~g~~l~ 1106 (1169)
+.+.++|||+|||.++++++|+++|++||.|..|.| +++ +.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRL-PKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEE-ecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 345689999999999999999999999999999875 445 66899999999999999999999976 79999999999
Q ss_pred EEeccCCCC
Q 001060 1107 IEERRPNTG 1115 (1169)
Q Consensus 1107 V~~~r~~~~ 1115 (1169)
|++++++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987643
No 124
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.54 E-value=2.4e-14 Score=132.15 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=74.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++++++|+++|++||.|.++.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKM-MFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 489999999999999999999999999999875 56777899999999999999999999975 9999999999999998
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 125
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=133.01 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=74.8
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..+.++|||+|||+++|+++|+++|++||.|..|.|. .+ +|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM-ME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEE-EC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3467999999999999999999999999999998753 34 788999999999999999999986 9999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9988654
No 126
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.53 E-value=3e-14 Score=134.46 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=75.9
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQL-MMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEE-EEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35699999999999999999999999999999875 56777899999999999999999999975 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98763
No 127
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.8e-14 Score=131.19 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=74.9
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++|+++|+++|++||.|..|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-EECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999875 4455 889999999999999999999976 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988643
No 128
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.6e-14 Score=130.76 Aligned_cols=83 Identities=17% Similarity=0.314 Sum_probs=73.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCC---CcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK---DVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~---~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
+.++|||+|||.++++++|+++|++||.|..|.|.. ++. +++++|||||+|.+.++|.+||.. ++..|+|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~-~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISK-KKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE-EECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe-cCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 458999999999999999999999999999987643 333 568999999999999999999996 899999999999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
++++++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987543
No 129
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.6e-14 Score=129.66 Aligned_cols=79 Identities=25% Similarity=0.375 Sum_probs=72.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTI-MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEE-CCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5689999999999999999999999999999875 56777889999999999999999999975 899999999999987
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 130
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=1.8e-13 Score=153.29 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-------
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIA--------CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV------- 421 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~--------~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~------- 421 (1169)
..|..++.++...|++++|+.+|++++.. .+....+|..++.++...|++++|..+|++++++.+
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555566666677777777777777776 455566778888888888888888888888876542
Q ss_pred -ccChHHHHHHH------HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 422 -KRLPEIHLFAA------RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 422 -p~~~~l~~~~a------~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
+....+|.... ......+.+.+|...+.++ ....|....+|..++.++.+.|++++|+.+|++++++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC-KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 12223333333 3334455666677777776 566888899999999999999999999999999998864
No 131
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.52 E-value=6.7e-14 Score=131.48 Aligned_cols=82 Identities=23% Similarity=0.259 Sum_probs=73.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec---eEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG---RQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g---~~l~V 1107 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| ++++ +|+++|||||+|.+.++|.+||+. ++..+.| +.|+|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV-LRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 5689999999999999999999999999999875 3444 789999999999999999999986 8999988 99999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
++++++..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987654
No 132
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=4.1e-14 Score=134.15 Aligned_cols=84 Identities=21% Similarity=0.265 Sum_probs=76.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.++++|||+|||.++|+++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEC-CBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35699999999999999999999999999999864 56777899999999999999999999985 99999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++.+
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987643
No 133
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.6e-14 Score=133.59 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=76.2
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.++++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL-NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEE-EecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 35699999999999999999999999999999875 56777899999999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 88754
No 134
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=1.4e-12 Score=152.14 Aligned_cols=315 Identities=10% Similarity=0.060 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH----HHhCCHHHHH-----------HHHHH
Q 001060 99 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL---CYGYWKKYADHE----ARVGSMDKVV-----------EVYER 160 (1169)
Q Consensus 99 ~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~---~~~~W~~~a~~e----~~~~~~e~A~-----------~l~er 160 (1169)
++.|...+. .+++++|..+++.+....+. +..+...|..+. +..+.++.+. +++++
T Consensus 16 l~~w~~~i~------~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 16 INEWYMYIR------RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHH------HcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 356666665 46899999999998776644 556554443333 3335555555 66666
Q ss_pred HHhccCCCHHHHHH------HHHHHHhhcCCHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001060 161 AVQGVTYSVDIWLH------YCIFAINTYGDPETIRRLFERGLAYV---GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 231 (1169)
Q Consensus 161 aL~~~P~s~~lw~~------y~~~~~~~~~~~e~Ar~~~erAl~~~---g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~ 231 (1169)
.-. .+.+.+.++. .+.++. ..|++++|+..|++|++.. +.+.....+|...+......|+++.|...|+
T Consensus 90 i~~-~~~~~~~~l~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 90 IDK-KQARLTGLLEYYFNFFRGMYEL-DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHH-HTHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHh-cCCCchhHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 543 3444443333 445555 7899999999999999863 3232345677788888888999999999999
Q ss_pred HHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001060 232 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 311 (1169)
Q Consensus 232 r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 311 (1169)
+++.+-...-. ...
T Consensus 168 ~al~~~~~~~~------------------------------------------------------------------~~~ 181 (383)
T 3ulq_A 168 QAYEIYKEHEA------------------------------------------------------------------YNI 181 (383)
T ss_dssp HHHHHHHTCST------------------------------------------------------------------THH
T ss_pred HHHHHHHhCcc------------------------------------------------------------------chH
Confidence 99765211000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hc
Q 001060 312 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI-----AC 386 (1169)
Q Consensus 312 ~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~-----~~ 386 (1169)
........++.+|...+++++|+..|++++.. +.-....+.....|..++..+...|++++|+..|++++. ..
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSM--AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 00113344466788889999999999999861 000011223345788899999999999999999999999 45
Q ss_pred -cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc----cChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhcCCC
Q 001060 387 -ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK----RLPEIHLFAARFKEQNGD---IDGARAAYQLVHTETSPG 458 (1169)
Q Consensus 387 -~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p----~~~~l~~~~a~~~e~~g~---~~~A~~~~~~a~~~~~P~ 458 (1169)
+....++..++.++...|++++|...|++++.+... .....+..++.++...|+ +++|+.++++. ...+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHH
Confidence 777889999999999999999999999999987632 122234557788888888 88899998885 44566
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 459 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 459 ~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
...++..++.++...|++++|...|++++....
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999764
No 135
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=144.21 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=73.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC--CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..++|||+|||+++|+++|+++|++|| .|.+|.| +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i-~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKF-AENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 458999999999999999999999999 9999875 56888999999999999999999999988 8999999999999
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
++++
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 8865
No 136
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.52 E-value=7.7e-15 Score=133.69 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=68.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCC--CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G--~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+|||+|||+++|+++|+++|++|| .|.++.+ +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|..+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i-~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKF-FENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEE-EECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEE-EecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 5799999999999999999999999 9999875 56778999999999999999999999975 899999999999998
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87543
No 137
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.3e-14 Score=133.30 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=73.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhc-CCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe-eeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQN-FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ-LAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~-~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~-i~g~~l~V~ 1108 (1169)
+.++|||+|||.++|+++|+++|++ ||.|..|.| ++++ +|+++|||||+|.+.++|.+||+. ++.. |+|+.|+|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKV-VLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEE-EECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEE-EECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 4689999999999999999999999 999999875 4555 899999999999999999999986 8888 999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++++.
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 987754
No 138
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=5.9e-13 Score=136.34 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=157.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
....|..++..+...|++++++..|++++...|.+..+|..++.++...|++++|..+|+++++.. |.+..+|+.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 356788888888899999999999999999999999999999999999999999999999999987 7889999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 514 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~ 514 (1169)
+...|++++|+.+|+++ .+..|.+..+|..++.++...|++++|+.+|++++...+. .+.++..++.++.. .
T Consensus 86 ~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~-~ 157 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKV-AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN------EGKVHRAIAFSYEQ-M 157 (186)
T ss_dssp HHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-T
T ss_pred HHHhcCHHHHHHHHHHH-HhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHH-c
Confidence 99999999999999998 7789999999999999999999999999999999998753 26788889988877 9
Q ss_pred CCHHHHHHHHHHHhhhcCCCH
Q 001060 515 RNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 515 g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
|++++|..+|+++++..|++.
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 158 GRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHcCCCch
Confidence 999999999999999887764
No 139
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.51 E-value=3.6e-13 Score=169.55 Aligned_cols=249 Identities=13% Similarity=0.031 Sum_probs=194.2
Q ss_pred CCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh
Q 001060 350 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCL--------IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV 421 (1169)
Q Consensus 350 pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL--------~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~ 421 (1169)
.++|.+...+...+ ...|++++|+..|++++ ...|.+.++|+.++..+...|++++|+..|++++++.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~- 463 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV- 463 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-
Confidence 35666666665544 56899999999999999 8899999999999999999999999999999999988
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001060 422 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 501 (1169)
Q Consensus 422 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~ 501 (1169)
|++..+|+.+|.++...|++++|+..|+++ ++++|++..+|+.++.++.++|++++ +..|++|+++.|. .+.
T Consensus 464 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~------~~~ 535 (681)
T 2pzi_A 464 GWRWRLVWYRAVAELLTGDYDSATKHFTEV-LDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG------VIS 535 (681)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT------CHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc------hHH
Confidence 899999999999999999999999999998 88999999999999999999999999 9999999999864 367
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhH--HHHHHHHHHHHhhcCCCCCCCCCHHH
Q 001060 502 LYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQ--IDFLEQLVDKFLMSNSDSPSTANAAE 579 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~--~~~~r~l~eral~~~~~~~~~l~~~~ 579 (1169)
+|..++..+.. .|++++|+..|+++++..|++...|...+......+.... .+.++...++......+.+. ...-
T Consensus 536 a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~--~~~l 612 (681)
T 2pzi_A 536 AAFGLARARSA-EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR--VLQI 612 (681)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT--HHHH
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH--HHHH
Confidence 89999999887 9999999999999999999999888777766554332110 12334444443333222221 2334
Q ss_pred HHHHHHHHHHHHHhh--------C---CH----HHHHHHHHHHHhhhCC
Q 001060 580 REELSCVFLEFLGLF--------G---DA----QLIKKAEDRHARLFLP 613 (1169)
Q Consensus 580 ~~~i~~~~l~fe~~~--------G---d~----~~i~~v~~R~~~~~~~ 613 (1169)
+..++..-+...... | +. ..++++++++..+-+.
T Consensus 613 ~~~ll~~~l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~ 661 (681)
T 2pzi_A 613 RALVLGGALDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPT 661 (681)
T ss_dssp HHHHHHHHHHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 555666666665432 2 22 3477788777665553
No 140
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.51 E-value=8.8e-15 Score=136.11 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=74.6
Q ss_pred CceEEEEecCCC------CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec-e
Q 001060 1032 EVKSVYVRNLPS------TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG-R 1103 (1169)
Q Consensus 1032 ~~~~i~V~nlp~------~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g-~ 1103 (1169)
.+++|||+|||+ ++++++|+++|++||.|.+|.| ++++.||+++|||||+|.+.++|.+||+. +|..|+| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i-~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEF-PIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 468999999999 9999999999999999999875 56788899999999999999999999975 9999999 9
Q ss_pred EEEEEeccCC
Q 001060 1104 QVYIEERRPN 1113 (1169)
Q Consensus 1104 ~l~V~~~r~~ 1113 (1169)
.|+|..++++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999988754
No 141
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.9e-14 Score=136.05 Aligned_cols=81 Identities=14% Similarity=0.240 Sum_probs=73.3
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCe-eeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRI-KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i-~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||+++|+++|+++|++||.| ..|.| +.++ +|+++|||||+|.+.++|.+||+.++..|+|+.|+|..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHV-LVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEE-CCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEE-EECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 356899999999999999999999999999 78765 4555 89999999999999999999999999999999999998
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 142
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.51 E-value=8.9e-14 Score=130.11 Aligned_cols=75 Identities=31% Similarity=0.529 Sum_probs=67.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 45899999999999999999999999999997642 46999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87654
No 143
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.3e-14 Score=128.98 Aligned_cols=81 Identities=21% Similarity=0.335 Sum_probs=74.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEE-EECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEE-EEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35789999999999999999999999999999875 56777889999999999999999999986 99999999999999
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 144
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=6e-14 Score=129.97 Aligned_cols=81 Identities=20% Similarity=0.186 Sum_probs=73.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++++++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVC-LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCE-EEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEE-EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4589999999999999999999999999998765 55778899999999999999999999966 899999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
No 145
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.51 E-value=5.2e-14 Score=134.53 Aligned_cols=79 Identities=22% Similarity=0.413 Sum_probs=70.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||+++|+++|+++|++||.|.+|+|. +++ +.+||||||+|.+.++|.+||+. ++..|+|+.|+|++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~-~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-EET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEe-ecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3689999999999999999999999999998863 443 45789999999999999999976 9999999999999987
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 754
No 146
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.51 E-value=6.4e-13 Score=146.13 Aligned_cols=190 Identities=14% Similarity=0.058 Sum_probs=164.1
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc--cCh
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVK--RLP 425 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p--~~~ 425 (1169)
+++...+.+...+..+.+.|++++|+..|++++...|.+ .++|+.++.++...|++++|+..|++++++++. ..+
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 456678889999999899999999999999999999998 999999999999999999999999999998731 346
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcCCHHHHH
Q 001060 426 EIHLFAARFKEQ--------NGDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLGNLEDAF 480 (1169)
Q Consensus 426 ~l~~~~a~~~e~--------~g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g~~e~A~ 480 (1169)
.+++.++.++.. .|++++|+..|+++ ++..|++..++ +.++.++.+.|++++|+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF-IDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH-HHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHH-HHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 789999999999 99999999999998 78899876655 78899999999999999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhhhcCCCHHHHHHHHHhH
Q 001060 481 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS----------RNAEKARQILVDSLDHVQLSKPLLEALIHFE 545 (1169)
Q Consensus 481 ~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~----------g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E 545 (1169)
..|++++...|.. ...+..+..++..+.. . |++++|+..|+++++.+|++......+..+.
T Consensus 169 ~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~-~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 169 VTYEAVFDAYPDT---PWADDALVGAMRAYIA-YAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp HHHHHHHHHCTTS---TTHHHHHHHHHHHHHH-HHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC---chHHHHHHHHHHHHHH-hcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 9999999998753 3346678888877765 4 8899999999999999999976665544433
No 147
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.6e-14 Score=131.06 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=75.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCee-eeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceE----E
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK-PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ----V 1105 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~-~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~----l 1105 (1169)
+.++|||+|||.++++++|+++|++||.|. .+.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKI-IRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEE-EECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE-eecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 468999999999999999999999999999 9875 56777899999999999999999999996 899999999 9
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|+++++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999988753
No 148
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-13 Score=129.07 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=72.2
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+.+.++|||+|||.++++++|+++|++||.|..|.| ++++. .++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM-ITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-ECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEE-EecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 346799999999999999999999999999999875 33432 3689999999999999999985 9999999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998754
No 149
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=2.5e-13 Score=170.58 Aligned_cols=166 Identities=11% Similarity=0.180 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 395 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~ 395 (1169)
.+..++.+|...+++++|+..|+++|+ ++|.....|..++..+.+.|++++|+..|+++|..+|.+.++|+.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~--------l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALE--------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 445568899999999999999999999 788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
++.++...|++++|+..|++|+++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..+|..++.++..+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A-l~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTA-LKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHhhhhhHHHhccc
Confidence 9999999999999999999999988 899999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 001060 476 LEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~ 491 (1169)
+++|+..|++++++.+
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999999999874
No 150
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.50 E-value=5.7e-14 Score=130.40 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=72.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeee--------eeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--------DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1102 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~--------~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g 1102 (1169)
+.++|||+|||.++++++|+++|++||.|.. +.| +.++.+|+++|||||+|.+.++|.+||+. ++..|+|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEE-EECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEE-EecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3589999999999999999999999999998 775 56778899999999999999999999985 9999999
Q ss_pred eEEEEEecc
Q 001060 1103 RQVYIEERR 1111 (1169)
Q Consensus 1103 ~~l~V~~~r 1111 (1169)
+.|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999864
No 151
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.8e-13 Score=127.99 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=72.9
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
..+.++|||+|||.++|+++|+++|++||.|..|.| ++++. .++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEE-ECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345699999999999999999999999999999875 33332 3889999999999999999986 9999999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9988654
No 152
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.4e-14 Score=130.75 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=68.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~--~~~i~g~~l~V~ 1108 (1169)
+.++|||+|||+++|+++|+++|++||.|++|.| ++ .||||||+|++.++|.+||+. + +..|+|+.|+|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i-~~------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-Ec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 5689999999999999999999999999999875 32 269999999999999999984 3 589999999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++..
T Consensus 88 ~A~~~~~ 94 (105)
T 1sjq_A 88 FSNHKEL 94 (105)
T ss_dssp CCSSSSC
T ss_pred EcCCCCC
Confidence 9987643
No 153
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=134.65 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=72.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecC-CCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-KDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~-~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||.++++++|+++|++|| |.+|.| ++++ .+|+++|||||+|.+.++|.+||..++..|+|+.|+|+.+
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i-~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEEC-SCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 458999999999999999999999999 999875 4455 5899999999999999999999966999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8753
No 154
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.49 E-value=2.4e-14 Score=125.58 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=69.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
+|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|++|++.++..|+|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAML-MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECC-CBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999875 55667899999999999999999999998999999999999864
No 155
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=126.42 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=73.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++++++|+++|++| .|..|.| +++ .+|+++|||||+|.+.++|.+||..++..|+|+.|+|..++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i-~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRI-VRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEE-EEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEE-EEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 56899999999999999999999999 8999875 445 68899999999999999999999988999999999999998
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 156
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.49 E-value=2.8e-14 Score=139.83 Aligned_cols=82 Identities=15% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeee--eeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCC----eeece
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPI----QLAGR 1103 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~--~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~----~i~g~ 1103 (1169)
.+.++|||+|||+++|+++|+++|++||.|.. |+| ++++.+|++||||||+|.+. +|.+||.. ++. .|+||
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i-~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRV-IKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEEC-CBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEE-EEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 35689999999999999999999999999976 664 56777999999999999999 99999977 888 99999
Q ss_pred EEEEEeccCCC
Q 001060 1104 QVYIEERRPNT 1114 (1169)
Q Consensus 1104 ~l~V~~~r~~~ 1114 (1169)
.|+|++++++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998754
No 157
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1e-13 Score=129.94 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=72.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeee-eeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP-DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~-~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++|+++|+++|++||.|.. |.| +.+ .+|+++|||||+|.+.++|.+||..++..|+||.|+|..+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i-~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL-PVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEEC-CBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEE-EEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 5689999999999999999999999999987 553 344 7899999999999999999999998999999999999887
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
.++
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 653
No 158
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.49 E-value=8.7e-14 Score=127.23 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=72.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.|. + .+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~-~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIK-M--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEE-E--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-c--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56899999999999999999999999999998753 3 4788999999999999999999986 899999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8754
No 159
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=125.08 Aligned_cols=75 Identities=24% Similarity=0.488 Sum_probs=68.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+.. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 56999999999999999999999999999997652 58999999999999999975 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 160
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=9.5e-12 Score=145.01 Aligned_cols=239 Identities=8% Similarity=0.003 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-------HHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-------PEY 392 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~-------~e~ 392 (1169)
++..|...+++++|+..|+++++. +.-.+..+.....|..++.++...|++++|+..|++++..++.. ..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESK--LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH--HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 456778889999999999999872 11112234467889999999999999999999999999986544 348
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----cC-CChHH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTE-----TS-PGLLE 461 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-----~~-P~~~~ 461 (1169)
+..++.++...|++++|...|++|+.+.... ...++..+|.++...|++++|+..|+++ ++ .+ |....
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA-IAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhccchhHHH
Confidence 8899999999999999999999999987322 1258888999999999999999999998 44 35 88889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC---HHHHHHHHHHHhhhcCCCHHHH
Q 001060 462 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN---AEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 462 ~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~---~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
++..++.++.++|++++|..+|++++.+.+...+ +.....+..++.+... .|+ +++|..++++. ...+....++
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD-VIYLSEFEFLKSLYLS-GPDEEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 9999999999999999999999999998653211 1111223445555443 777 88888888877 3334444566
Q ss_pred HHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 539 EALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 539 ~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
..++.+....++ .+.+...|++++..
T Consensus 343 ~~la~~y~~~g~---~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 343 IDVAKYYHERKN---FQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHHH
Confidence 677777777776 55677788887664
No 161
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.49 E-value=8e-14 Score=126.28 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=72.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcc-cccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~-~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.++|||+|||.++|+++|+++|++||.|..+.+ +.++.++. ++|||||+|.+.++|.+|++. ++..|+|+.|+|+.+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM-PVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 489999999999999999999999999999875 44554444 899999999999999999986 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7753
No 162
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=1.2e-12 Score=140.52 Aligned_cols=166 Identities=11% Similarity=0.090 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh-hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHH
Q 001060 317 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 395 (1169)
Q Consensus 317 i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~-~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~ 395 (1169)
+..++..|...+++++|+..|+++|+ +++ .+...|..++..+...|++++|+..|++++...|.+..+|+.
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLK--------LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh--------ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 34456788899999999999999998 555 667889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--hHHHHHHH
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLP-------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--LLEAIIKH 466 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~-------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--~~~~~~~~ 466 (1169)
++.++...|++++|+..|++++++. |+++ .+|+.++.++...|++++|+..|+++ ++++|+ +..+|+.+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA-TDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTSSCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH-HhcCCCcccHHHHHHH
Confidence 9999999999999999999999988 7888 66999999999999999999999998 889999 89999999
Q ss_pred HHHHHHcCCH---------------------------HHHHHHHHHHHHhhhC
Q 001060 467 ANMERRLGNL---------------------------EDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 467 a~~e~r~g~~---------------------------e~A~~iy~~Al~~~~~ 492 (1169)
+.++...|+. ++|+..|++++++.|+
T Consensus 160 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999888887 8899999999999864
No 163
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=129.06 Aligned_cols=79 Identities=22% Similarity=0.395 Sum_probs=70.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|+.|+.|. + +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~---~-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRAR---I-VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEEE---E-EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEEE---E-EecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 568999999999999999999999886543 3 55777889999999999999999999985 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 90 ~~~~ 93 (102)
T 2fc8_A 90 KPKG 93 (102)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 164
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.5e-13 Score=126.72 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=70.6
Q ss_pred CceEEEEecCCCCCCHHHHH----HHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
++++|||+|||+++++++|+ ++|++||.|.+|.| +.++.+ +|||||+|.+.++|.+||+. ++..|+|+.|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i-~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVEL-SPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEE-EeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 46899999999999999999 99999999999875 444433 78999999999999999985 99999999999
Q ss_pred EEeccCCC
Q 001060 1107 IEERRPNT 1114 (1169)
Q Consensus 1107 V~~~r~~~ 1114 (1169)
|++++++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99998754
No 165
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=127.64 Aligned_cols=81 Identities=25% Similarity=0.346 Sum_probs=72.4
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+.+.++|||+|||.++++++|+++|++||.|..|.| ++++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTI-CKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345699999999999999999999999999999875 3444 488999999999999999999985 9999999999999
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8764
No 166
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=2.2e-12 Score=131.97 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 395 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~ 395 (1169)
++..+...|...+++++++..|+++++ .++.....|..++..+...|++++|+..|++++..+|.+..+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYD--------ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCC--------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 444556778889999999999999987 567778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 396 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
++.++...|++++|..+|++++... |.+..+|+.++.++...|++++|+.+|+++ ++..|.+..+|..++.++...|+
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA-LGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH-HhcCccchHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987 789999999999999999999999999998 77899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCC
Q 001060 476 LEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 476 ~e~A~~iy~~Al~~~~~~ 493 (1169)
+++|..+|++++...|+.
T Consensus 160 ~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 160 HEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 999999999999998753
No 167
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.47 E-value=1.3e-14 Score=142.60 Aligned_cols=79 Identities=18% Similarity=0.076 Sum_probs=70.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++|||+|||+++|+++|+++|++|| |..|.| ++++ +|+++|||||+|++.++|.+||..++..|+||.|+|..+.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i-~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI-EIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC-CCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 468999999999999999999999999 667664 4454 4999999999999999999999778999999999999877
Q ss_pred CC
Q 001060 1112 PN 1113 (1169)
Q Consensus 1112 ~~ 1113 (1169)
++
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 168
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=127.22 Aligned_cols=79 Identities=28% Similarity=0.461 Sum_probs=70.5
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++|+++|+++|++||.|+ + +++ .+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---~-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK---V-PQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---C-CBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---E-EEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3569999999999999999999999999883 2 333 6788999999999999999999985 89999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98763
No 169
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.47 E-value=7.2e-14 Score=136.20 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=75.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEE-ECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5689999999999999999999999999999875 56777899999999999999999999985 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++++
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8764
No 170
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=3.5e-15 Score=143.03 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=75.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeee--------eeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--------DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1101 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~--------~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~ 1101 (1169)
.+.++|||+|||.++++++|+++|++||.|.. |.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 35689999999999999999999999999988 654 45667889999999999999999999985 899999
Q ss_pred ceEEEEEeccCCC
Q 001060 1102 GRQVYIEERRPNT 1114 (1169)
Q Consensus 1102 g~~l~V~~~r~~~ 1114 (1169)
|+.|+|++++++.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998764
No 171
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=126.61 Aligned_cols=75 Identities=29% Similarity=0.390 Sum_probs=66.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CC--CeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP--IQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~--~~i~g~~l~V~ 1108 (1169)
++++|||+|||+++|+++|+++|++||.|+++.+ + +.||||||+|++.++|.+||+. ++ ..|+||+|+|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~------~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-M------PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-E------TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-E------cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 5789999999999999999999999999999764 3 2468999999999999999986 44 46899999999
Q ss_pred eccCC
Q 001060 1109 ERRPN 1113 (1169)
Q Consensus 1109 ~~r~~ 1113 (1169)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 98865
No 172
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=1.2e-12 Score=146.48 Aligned_cols=247 Identities=11% Similarity=0.027 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------c
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--------A 387 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~--------~ 387 (1169)
.+..+..+|...+++++++..|+++++..--...+..+.....|..++..+...|++++|+..|++++... +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 44556778889999999999999998721000111256677889999999999999999999999999884 5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-----
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVF-------VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET----- 455 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~-------~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~----- 455 (1169)
....+|..++.++...|++++|+.+|++++.+. .+....++..++.++...|++++|+.+|+++ +++
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~~~~~ 187 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA-LEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHHh
Confidence 567799999999999999999999999999874 2445678889999999999999999999998 555
Q ss_pred ---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc---cCchHHHHHHH------HHHHHHHhCCHHHHHHH
Q 001060 456 ---SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH---SQTLPMLYAQY------SRFLHLVSRNAEKARQI 523 (1169)
Q Consensus 456 ---~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~---~~~~~~l~~~~------a~~~~~~~g~~e~Ar~i 523 (1169)
.|....+|..++.++...|++++|+.+|++++...+.... ......+|... +..... .+.+.+|...
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~ 266 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD-GTSFGEYGGW 266 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC--------CCSCCCC--
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh-HHHHHHHHHH
Confidence 6777888999999999999999999999999986432100 00000111111 111111 3334444455
Q ss_pred HHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 524 LVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 524 ~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
+++++...|....++..++.+....++ .+.+..+|++++..
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGK---FEAAETLEEAAMRS 307 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHH
Confidence 555555555555555555555555544 34455555555543
No 173
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.47 E-value=5.5e-14 Score=134.29 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=63.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceE-----E
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ-----V 1105 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~-----l 1105 (1169)
..++|||+|||+++|+++|+++|++||.|..|.| +.+ |||||+|.+.++|.+||+. ++..|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV-YRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEE-CTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-ecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 3589999999999999999999999999999765 222 8999999999999999985 999999998 7
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|...+++.
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 787776643
No 174
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.47 E-value=1.1e-13 Score=121.92 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=66.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
+..|||+||++.+|+++|+++|.+||+|+++++.. +||||||+|.+.++|.+|++. |+..++||.|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 47899999999999999999999999999987522 679999999999999999987 8999999999999874
No 175
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.47 E-value=1.4e-13 Score=140.55 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=75.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||..+++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|.|.++
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEE-EecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4689999999999999999999999999999875 56777899999999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 87643
No 176
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=3.1e-13 Score=123.55 Aligned_cols=75 Identities=20% Similarity=0.360 Sum_probs=67.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 56999999999999999999999999999997642 35999999999999999976 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87643
No 177
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=131.74 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=72.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..+.+.++. .+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM-MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEE-ECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEc-CCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 56899999999999999999999999999665433322 2788999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87643
No 178
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.7e-13 Score=127.67 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=73.3
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADI-LEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 35689999999999999999999999999999875 3444 688999999999999999999985 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++...
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87643
No 179
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=3.7e-14 Score=132.20 Aligned_cols=81 Identities=12% Similarity=0.277 Sum_probs=73.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||.++|+++|+++|++||.|.. ..+.++.+|+++|||||+|.+.++|.+||++++..|+|+.|+|++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 4689999999999999999999999999987 23566678899999999999999999999988999999999999998
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 180
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=9.7e-14 Score=128.04 Aligned_cols=75 Identities=21% Similarity=0.419 Sum_probs=68.3
Q ss_pred CceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
+.++|||+|||+ ++++++|+++|++||.|..+.+ ++|||||+|.+.++|.+||.. ++..++|+.|+|++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 569999999998 9999999999999999999764 268999999999999999986 99999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987543
No 181
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7.8e-14 Score=135.28 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=72.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++|+++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||.+++..|+|+.|.|..+.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~-~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIY-IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCE-EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEE-EEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 5689999999999999999999999999988644 456678999999999999999999999988999999999999876
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
+
T Consensus 103 ~ 103 (124)
T 1wel_A 103 K 103 (124)
T ss_dssp H
T ss_pred H
Confidence 4
No 182
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.46 E-value=3.8e-13 Score=135.02 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
+.+|...+++++++..|++++. .+|.....|..++..+.+.|++++|+..|+++|..+|.++++|..++.++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY 75 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcc--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4466777899999999999987 78888889999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHH-HHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA-YQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~-~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
...|++++|+..|++++++. |+++.+|+.+|.++.+.|++++|... ++++ ++++|++..+|..++.++.+.|+
T Consensus 76 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a-l~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERA-AKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH-HHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999987 89999999999999999998876665 5887 88999999999999988887764
No 183
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.6e-14 Score=131.72 Aligned_cols=83 Identities=20% Similarity=0.393 Sum_probs=75.7
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRL-VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEE-EEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEE-EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 35689999999999999999999999999999875 55677899999999999999999999975 89999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 88754
No 184
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2e-13 Score=129.15 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=75.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCC-eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~--~~~i~g~~l~V 1107 (1169)
+.++|||+|||.++|+++|+++|++||. |..+.+...++.+|+++|||||+|.+.++|.+||.. + ++.|+|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4689999999999999999999999998 999875436778889999999999999999999986 4 59999999999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
++++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987643
No 185
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.9e-13 Score=129.27 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=71.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..|.+ ++++ ++++|||||+|.+.++|.+|++. ++..|+|+.|+|+++
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEE-CCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEE-EECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5689999999999999999999999999999875 3343 35899999999999999999986 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 186
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.46 E-value=1.2e-13 Score=127.04 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=72.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++|+++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVC-LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCE-EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEE-EEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4589999999999999999999999999998765 55677899999999999999999999985 999999999999986
Q ss_pred cC
Q 001060 1111 RP 1112 (1169)
Q Consensus 1111 r~ 1112 (1169)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 187
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.5e-13 Score=124.16 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=68.5
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1107 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V 1107 (1169)
.++++|||+|||+++++++|+++|++||.|.+|.+ ++ .||||||+|++.++|.+||+. ++..|+|+.|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-LK------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EC------CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 35689999999999999999999999999999754 32 269999999999999999974 588999999999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
++++.+.-
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99987643
No 188
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=129.12 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=70.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||+++|+++|+++|++| .|..|.| +.++ +|+++|||||+|.+.++|.+||.+++..|+||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHL-LKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEE-CCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEE-EECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 45899999999999999999999999 8888765 4454 4899999999999999999999889999999999998775
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 189
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.45 E-value=1.8e-12 Score=137.76 Aligned_cols=169 Identities=12% Similarity=0.047 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR----------------YVLCMEASGSMDLAHNALARATHV 419 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~----------------~a~~l~~~g~~e~A~~vl~rAl~~ 419 (1169)
.+.+...+..+.+.|++++|+..|++++...|.++++|+. ++.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556677777788999999999999999999999999999 999999999999999999999998
Q ss_pred hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhCCCccC
Q 001060 420 FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN--LEDAFSLYEQAIAIEKGKEHSQ 497 (1169)
Q Consensus 420 ~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~--~e~A~~iy~~Al~~~~~~~~~~ 497 (1169)
. |++..+|+.+|.++...|++++|+..|+++ ++++|++..+|+.++.++...|+ .+.+...|++++...+
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKI-LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK------ 155 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc------
Confidence 8 899999999999999999999999999998 88999999999999998866654 4566777777664331
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 498 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 498 ~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
....+...+..... .|++++|+..|++|++++|++
T Consensus 156 -~~~a~~~~g~~~~~-~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 156 -MQYARYRDGLSKLF-TTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -HHHHHHHHHHHHHH-HHTHHHHHHHHHHHTTTSCCH
T ss_pred -hhHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCH
Confidence 11234444545444 889999999999999999975
No 190
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.45 E-value=2.9e-13 Score=127.55 Aligned_cols=79 Identities=27% Similarity=0.321 Sum_probs=72.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||+.+|+++|+++|++||.|+.|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-HYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35699999999999999999999999999999875 4455 899999999999999999999986 99999999999998
Q ss_pred cc
Q 001060 1110 RR 1111 (1169)
Q Consensus 1110 ~r 1111 (1169)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 191
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.45 E-value=4.1e-14 Score=124.04 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=69.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1035 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1035 ~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
+|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++.++..|+|+.|+|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL-PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECC-CCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999864 55777899999999999999999999999999999999998763
No 192
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=128.90 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=71.5
Q ss_pred CceEEEEecCCCCC------CHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeece-
Q 001060 1032 EVKSVYVRNLPSTV------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR- 1103 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~------t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~- 1103 (1169)
..++|||+|||+.+ |+++|+++|++||.|.+|.| . +.+|+++|||||+|.+.++|.+||.. +|..|+|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i--~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY--P-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEEC--C-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEe--e-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 46899999999999 78999999999999999764 2 56889999999999999999999986 89999998
Q ss_pred EEEEEeccCC
Q 001060 1104 QVYIEERRPN 1113 (1169)
Q Consensus 1104 ~l~V~~~r~~ 1113 (1169)
.|+|+.++..
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999988754
No 193
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=7.7e-14 Score=122.94 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=69.5
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++..+..|+|+.|+|+.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEE-ECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-ecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 47999999999999999999999999999875 56777899999999999999999999998559999999999875
No 194
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.44 E-value=3.2e-13 Score=137.00 Aligned_cols=83 Identities=24% Similarity=0.365 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|.++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEC-CCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4689999999999999999999999999999875 55777899999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++.+
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87643
No 195
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.1e-13 Score=128.37 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=68.8
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeceEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1107 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~--~~~i~g~~l~V 1107 (1169)
.++++|||+|||+++|+++|+++|++||.|++|.| ++ .||||||+|++.++|.+||+. + +..|+|+.|+|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i-~~------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE-EG------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eC------CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 35789999999999999999999999999999865 32 269999999999999999986 3 68999999999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
++++++.-
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99987644
No 196
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=3.1e-13 Score=125.10 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=67.0
Q ss_pred CceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~--~~~i~g~~l~V 1107 (1169)
++++|||+|||+ ++|+++|+++|++||.|.+|.| ++ .+|||||+|++.++|.+||+. + +..|+||.|+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LN------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CS------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-Ec------CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 578999999999 9999999999999999999764 32 348999999999999999985 4 57799999999
Q ss_pred EeccCCC
Q 001060 1108 EERRPNT 1114 (1169)
Q Consensus 1108 ~~~r~~~ 1114 (1169)
++++.+.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998643
No 197
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=131.31 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=71.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCC---eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~ 1108 (1169)
+.++|||+|||+++|+++|+++|++||. |..|+| ++++. |+++|||||+|.+.++|.+||+.++..|+||.|+|.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i-~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEE-EECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEE-EECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 5689999999999999999999999999 888775 44554 899999999999999999999999999999999998
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
.+..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 198
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.44 E-value=1.1e-13 Score=136.12 Aligned_cols=84 Identities=24% Similarity=0.358 Sum_probs=76.0
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC-CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999864 55677899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
+++...
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987644
No 199
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.8e-13 Score=128.53 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=73.0
Q ss_pred CceEEEEecCCCCCCHHHHH---HHHhcCCCeeeeeEEeecCCC---cccccEEEEEECCHHHHHHHHHh-CCCeeeceE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIE---EEFQNFGRIKPDGVFVRNRKD---VVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1104 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~---~~F~~~G~i~~~~i~~~~~~~---g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~ 1104 (1169)
+.++|||+|||+++++++|+ ++|++||.|..|.| ++++.+ ++++|||||+|.+.++|.+||+. ++..|+|+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i-~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI-NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE-ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEE-ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 46899999999999999999 99999999999876 445543 35669999999999999999987 999999999
Q ss_pred EEEEeccCCC
Q 001060 1105 VYIEERRPNT 1114 (1169)
Q Consensus 1105 l~V~~~r~~~ 1114 (1169)
|+|++++++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998865
No 200
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.44 E-value=1.7e-13 Score=129.23 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=67.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC-CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+++|||+|||+++++++|+++|++|| .|..+.|. . ++++|||||+|.+.++|++||+. ++..|+|+.|+|+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~--~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN--T---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS--S---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE--c---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 468999999999999999999999999 89986542 1 24789999999999999999976 89999999999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
++..
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 201
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=8.1e-13 Score=122.58 Aligned_cols=74 Identities=31% Similarity=0.417 Sum_probs=67.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcC--CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNF--GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~--G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+.++|||+|||+++|+++|+++|++| |.|..+.+ .+|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 56899999999999999999999999 88988643 357999999999999999985 9999999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998754
No 202
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.43 E-value=1.9e-11 Score=137.18 Aligned_cols=234 Identities=10% Similarity=0.079 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhccCCCHHHHHHHHHHH----Hhhc---CCH
Q 001060 116 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG--SMDKVVEVYERAVQGVTYSVDIWLHYCIFA----INTY---GDP 186 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~--~~e~A~~l~eraL~~~P~s~~lw~~y~~~~----~~~~---~~~ 186 (1169)
.-++|..+++++|..+|.++.+|.....+....+ .+++++++++++|..+|.+..+|.+-..++ . .. +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~-~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME-LNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH-HTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH-hccccCCH
Confidence 3356777778888888888888877777777777 777888888888887787878877776665 3 33 567
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHH--HHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHH
Q 001060 187 ETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWS--RVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 264 (1169)
Q Consensus 187 e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~--~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e 264 (1169)
++++..++++++. ++.+..+|..-.-.....+.++ .+...+.++|+.
T Consensus 127 ~~EL~~~~~~l~~---~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---------------------------- 175 (306)
T 3dra_A 127 YREFDILEAMLSS---DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---------------------------- 175 (306)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----------------------------
Confidence 7777778877773 4445566655554444444433 344444444433
Q ss_pred HHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 001060 265 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 344 (1169)
Q Consensus 265 ea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~ 344 (1169)
T Consensus 176 -------------------------------------------------------------------------------- 175 (306)
T 3dra_A 176 -------------------------------------------------------------------------------- 175 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCChhcHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHH-HHHHHHHHH
Q 001060 345 YFHVKPLSVTELENWHNYLDFIERDGD------FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL-AHNALARAT 417 (1169)
Q Consensus 345 ~~~v~pl~~~~~~~W~~yl~~~~~~gd------~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~-A~~vl~rAl 417 (1169)
++.+..+|+.........+. +++++..++++|..+|.+..+|..+..++...|...+ +..++.+++
T Consensus 176 -------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 176 -------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp -------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred -------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 33333444433333322222 5566777788888888888888877777777766433 445555555
Q ss_pred HHh--hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001060 418 HVF--VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN 468 (1169)
Q Consensus 418 ~~~--~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 468 (1169)
.+. .+.++.++..++.++.+.|++++|.++|+++..+++|-....|...+.
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 432 155777888888888888888888888888743478888877776553
No 203
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.43 E-value=1.5e-13 Score=134.52 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=72.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCC---eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
.+.++|||+|||+++|+++|+++|++||. |..|.| ++++. |+++|||||+|.+.++|.+||+.++..|+||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i-~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEE-EECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEE-EECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 35689999999999999999999999999 888775 44555 99999999999999999999998899999999999
Q ss_pred EeccC
Q 001060 1108 EERRP 1112 (1169)
Q Consensus 1108 ~~~r~ 1112 (1169)
..+.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 88754
No 204
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=2e-13 Score=125.88 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=70.9
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEE
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~ 1108 (1169)
+.+.++|||+|||.++++++|+++|++||.|+.+ ..+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE------EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe------CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3467999999999999999999999999998753 34678999999999999999999985 8999999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 998764
No 205
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.8e-14 Score=126.33 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=70.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||.++++++|+++|++||.|..+.| +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKA-ILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEE-ECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4589999999999999999999999999999875 55777899999999999999999999986 899999998877654
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 206
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.43 E-value=1.2e-12 Score=126.84 Aligned_cols=82 Identities=26% Similarity=0.299 Sum_probs=74.2
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..+++|||+|||.++++++|+++|++||.|..|.| ++++ +|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEE-ECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45799999999999999999999999999999875 4455 899999999999999999999985 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
+.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87643
No 207
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.7e-13 Score=123.64 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=69.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
...++|||+|||.++|+++|+++|++||.|. +.+. +++++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-----WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-----EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-----cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3568999999999999999999999999996 5443 246789999999999999999976 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
+++++
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 208
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=5.3e-13 Score=121.46 Aligned_cols=74 Identities=23% Similarity=0.374 Sum_probs=67.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..+.+. ++||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 56899999999999999999999999999997642 35999999999999999986 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 209
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=3.2e-13 Score=130.63 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=69.7
Q ss_pred CceEEEEecCCCCCCHHHHH----HHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
++++|||+|||+.+++++|+ ++|++||.|.+|.+ ..+|+++|||||+|.+.++|.+||.. +|..|.|+.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i----~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV----DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE----CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe----ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 45899999999999999876 69999999988643 23678999999999999999999976 89999999999
Q ss_pred EEeccCCC
Q 001060 1107 IEERRPNT 1114 (1169)
Q Consensus 1107 V~~~r~~~ 1114 (1169)
|++++++.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998754
No 210
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.43 E-value=1.3e-13 Score=128.83 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=73.5
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++++++|+++|++||.|..|.| +.++ +|+++|||||+|.+.++|.+||. +++.|+|+.|.|..+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKI-ITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-EECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 35689999999999999999999999999999875 4455 89999999999999999999999 999999999999988
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7653
No 211
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4e-13 Score=123.06 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=66.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCC-eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CC-CeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP-IQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~-i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~-~~i~g~~l~V~ 1108 (1169)
+.++|||+|||.++|+++|+++|++||. |..+. + .++|||||+|.+.++|.+||+. ++ ..|+|+.|+|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~--~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQV--L------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCE--E------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEE--E------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 4589999999999999999999999999 66543 2 2468999999999999999985 88 99999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998753
No 212
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=6.2e-13 Score=124.87 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEE
Q 001060 1030 EGEVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQV 1105 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l 1105 (1169)
..++++|||+|||++ +++++|+++|++||.|.+|.| + ++||||||+|++.++|.+||+. ++..|+||.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-M------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-E------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-e------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 345789999999998 999999999999999999765 2 2479999999999999999985 4678999999
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|++++.+.
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999987654
No 213
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.42 E-value=6.7e-13 Score=137.84 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=94.9
Q ss_pred chhHhHHHHHHHHhhhhC-----ccccccccc-CCceEE-EEcCCc--------------------------cc------
Q 001060 721 AQVGSYFVGQYYQVLQQQ-----PDLVHQFYS-DASSMI-RVDGDS--------------------------TE------ 761 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~-----p~~l~~fY~-~~s~~~-~~~g~~--------------------------~~------ 761 (1169)
..++..|+++||..+++. |..|..+|+ ++|.|. +.+... ..
T Consensus 13 ~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~~r 92 (205)
T 3nv0_A 13 RTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFAANR 92 (205)
T ss_dssp HHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTTTSS
T ss_pred HHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccHHHH
Confidence 357889999999999987 899999999 577765 222110 00
Q ss_pred ---chhhHHHHHHHHhcCCCcceeEe--eeeccccCCCceEEEEEEEEEec--------CccccceeEEEEEEEeeC-Ce
Q 001060 762 ---SASSMLDIHSLVISLNFTAIEIK--TINSLGSWNGGVLVMVSGSVKTK--------EFCRRRKFVQTFFLAPQE-KG 827 (1169)
Q Consensus 762 ---~~~~~~~I~~~~~~l~~~~~~i~--~~d~q~~~~~~ilv~v~G~~~~~--------~~~~~~~F~q~F~L~~~~-~~ 827 (1169)
-..|.++|.++|.+||.+.+.+. +||||+..+++|+|+|+|.+... +..+.|.|+|||+|.|.+ ++
T Consensus 93 ~~~L~~G~~~I~~~L~~LP~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~~~g~ 172 (205)
T 3nv0_A 93 ASRISHGAMDIVVALSRLPATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEGK 172 (205)
T ss_dssp CCSCEEHHHHHHHHHHHSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEECSTTC
T ss_pred HHHHhhCHHHHHHHHHhCCCeEEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEECCCCc
Confidence 11477899999999998888777 48999988888999999999975 124689999999999986 79
Q ss_pred EEEEcceEEec
Q 001060 828 YFVLNDIFHFL 838 (1169)
Q Consensus 828 y~v~nDifr~~ 838 (1169)
|+|+||++-.-
T Consensus 173 ~~I~ND~L~Ir 183 (205)
T 3nv0_A 173 VAIVSDQLFIS 183 (205)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEecEEEee
Confidence 99999999543
No 214
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.42 E-value=4.5e-12 Score=159.57 Aligned_cols=179 Identities=13% Similarity=0.004 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 001060 325 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 404 (1169)
Q Consensus 325 ~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g 404 (1169)
...+++++|+..|++++.+.+-....++|...+.|..++..+...|++++|+..|++++...|.+.++|+.++.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 35678899999999999211111112678889999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 405 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 405 ~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
++++|+..|++++++. |++..+|+.+|.++.+.|++++ +..|+++ ++++|++..+|+.++.++.++|++++|+..|+
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a-l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTV-WSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHH-HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999988 8999999999999999999999 9999998 88999999999999999999999999999999
Q ss_pred HHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 485 QAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 485 ~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
+++++.| ..+..|..++..+..
T Consensus 559 ~al~l~P------~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 559 EVPPTSR------HFTTARLTSAVTLLS 580 (681)
T ss_dssp TSCTTST------THHHHHHHHHHHTC-
T ss_pred hhcccCc------ccHHHHHHHHHHHHc
Confidence 9999875 346778888777544
No 215
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1e-12 Score=122.44 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=66.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~---~~~~i~g~~l~V~ 1108 (1169)
+.++|||+|||+++++++|+++|++||.|.+|.+ ++ .||||||+|++.++|.+||+. ++..|+|+.|+|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-MP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 5689999999999999999999999999999754 32 368999999999999999975 4677999999999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
+++.+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998754
No 216
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.42 E-value=6.8e-13 Score=131.58 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=71.8
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++++++|+++|++||.|..+.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC-CCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEE-eecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35699999999999999999999999999999864 56777899999999999999999999975 89999999999986
Q ss_pred c
Q 001060 1110 R 1110 (1169)
Q Consensus 1110 ~ 1110 (1169)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 217
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=122.52 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=64.7
Q ss_pred eEEEEecCCCCC------CHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeece-EE
Q 001060 1034 KSVYVRNLPSTV------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR-QV 1105 (1169)
Q Consensus 1034 ~~i~V~nlp~~~------t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~-~l 1105 (1169)
++|||+|||..+ ++++|+++|++||.|.++.+ . +.+|+++|||||+|.+.++|.+||.. +|..|+|+ .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i--~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY--P-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEEC--C-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEe--c-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 789999999999 77999999999999999764 3 56889999999999999999999986 89999999 88
Q ss_pred EE
Q 001060 1106 YI 1107 (1169)
Q Consensus 1106 ~V 1107 (1169)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 218
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=9.5e-13 Score=125.54 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=72.7
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee--------
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-------- 1100 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i-------- 1100 (1169)
+.+.++|||+|||.++|+++|+++|++||.|..+.| ++++ +|+++|||||+|.+.++|.+||.. ++..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-EECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 345689999999999999999999999999999875 4455 889999999999999999999985 89888
Q ss_pred eceEEEEEeccCC
Q 001060 1101 AGRQVYIEERRPN 1113 (1169)
Q Consensus 1101 ~g~~l~V~~~r~~ 1113 (1169)
.|+.|.|.+++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5778999998864
No 219
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.42 E-value=8.3e-14 Score=126.82 Aligned_cols=79 Identities=27% Similarity=0.485 Sum_probs=70.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.+ |.+|+.. ++..|+|+.|+|+.+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKL-IYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEE-CCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEE-EEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999999999875 567778999999999999999 9999987 89999999999999877
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 220
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.41 E-value=5.1e-13 Score=126.54 Aligned_cols=74 Identities=24% Similarity=0.373 Sum_probs=67.2
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..++|||+|||.+ +++++|+++|++||.|..|.| ++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4589999999999 999999999999999999764 468999999999999999965 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
+++..
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88643
No 221
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=130.05 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=71.8
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCC---eeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~---i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
.+.++|||+|||+++|+++|+++|+.||. |..|.| +.++. |+++|||||+|.+.++|.+||..++..|+||.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i-~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF-LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEEC-CCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEE-EECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 35689999999999999999999999998 888765 44554 89999999999999999999998899999999999
Q ss_pred EeccC
Q 001060 1108 EERRP 1112 (1169)
Q Consensus 1108 ~~~r~ 1112 (1169)
..+.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 88764
No 222
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=8.1e-13 Score=121.28 Aligned_cols=77 Identities=25% Similarity=0.472 Sum_probs=68.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++|||+|||+++|+++|+++|++||.|.+| +.++.+|+ ||||+|.+.++|.+||..++..|+|+.|+|+.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v---~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV---VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE---EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE---EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 35799999999999999999999999999985 45665654 9999999999999999988999999999999876
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 223
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.40 E-value=8.7e-13 Score=121.77 Aligned_cols=73 Identities=22% Similarity=0.421 Sum_probs=66.9
Q ss_pred CceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
+.++|||+|||. ++++++|+++|++||.|..+.+ .+|||||+|.+.++|.+||.. ++..++|+.|+|++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 458999999998 9999999999999999999764 268999999999999999985 89999999999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
++++
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 224
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.3e-13 Score=124.92 Aligned_cols=75 Identities=29% Similarity=0.436 Sum_probs=67.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
++|||+|||.++|+++|+++|++||.|..+.+ +++ ++|||||+|.+.++|.+|++. ++..|+|+.|+|+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-ARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEE-ESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999765 322 679999999999999999986 89999999999999987
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
+.
T Consensus 75 ~~ 76 (101)
T 2hvz_A 75 MP 76 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 225
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2.2e-13 Score=130.87 Aligned_cols=79 Identities=27% Similarity=0.132 Sum_probs=70.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCe----eeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRI----KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i----~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
+.++|||+|||+++|+++|+++|++||.| ..|.| +.+ .+|+++|||||+|.+.++|.+||+.++..|+||.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i-~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILF-VTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEE-EEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEE-EEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 46899999999999999999999999986 57654 344 5899999999999999999999999999999999999
Q ss_pred EeccC
Q 001060 1108 EERRP 1112 (1169)
Q Consensus 1108 ~~~r~ 1112 (1169)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87653
No 226
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9.5e-13 Score=124.46 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=69.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
...++|||+|||.++++++|+++|++||.|..|.| +++ +|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV-FPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEE-ETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 35689999999999999999999999999999765 222 68999999999999999966 99999999999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987643
No 227
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=3.9e-11 Score=134.54 Aligned_cols=214 Identities=16% Similarity=0.136 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC------CHHHHHHHHHHHHH
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN------YPEYWIRYVLCMEA 402 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~------~~e~W~~~a~~l~~ 402 (1169)
++++++..|+++. ..+...|++++|+..|++++.+.+. ...+|..++.++..
T Consensus 32 ~~~~A~~~~~~a~----------------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQAA----------------------TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHHH----------------------HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH----------------------HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4777777776653 3456789999999999999998532 25689999999999
Q ss_pred cCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhcCCCh------HHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQN-GDIDGARAAYQLVHTETSPGL------LEAIIKHANME 470 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~-g~~~~A~~~~~~a~~~~~P~~------~~~~~~~a~~e 470 (1169)
.|++++|+..|++|+++.+.. ...+|..++.++... |++++|+..|+++ +++.|.. ..++..++.++
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A-l~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA-GEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHH
Confidence 999999999999999988321 145788899999996 9999999999998 6666643 56789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCcc-CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH-----HHHHHh
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEHS-QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL-----EALIHF 544 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~~-~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~-----~~~a~~ 544 (1169)
.++|++++|+.+|++++...+..... .....+|..++.++.. .|++++|+..|+++++++|...... ..++..
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~ 247 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA-ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA 247 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH-TTCHHHHHHHHHGGGCC---------HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999999988653221 1223467777777666 9999999999999999998765432 222221
Q ss_pred HhhCCChhHHHHHHHHHHHHhhc
Q 001060 545 ESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 545 E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
. ..++.+.++.+...|++++..
T Consensus 248 ~-~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 248 V-NEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp H-HTTCTTTHHHHHHHHTTSSCC
T ss_pred H-HcCCHHHHHHHHHHhccCCcc
Confidence 1 123334455666667666553
No 228
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.40 E-value=4e-13 Score=124.16 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=71.4
Q ss_pred CceEEEEecCCCCCCHHHHH----HHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
++++|||+|||.++++++|+ ++|++||.|..|.+ . .+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i--~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV--S--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEEC--C--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEE--E--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 56899999999999999999 99999999998654 2 3678899999999999999999986 99999999999
Q ss_pred EEeccCCC
Q 001060 1107 IEERRPNT 1114 (1169)
Q Consensus 1107 V~~~r~~~ 1114 (1169)
|++++++.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998754
No 229
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=1e-12 Score=121.91 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=68.4
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..|.+. +.+|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 56899999999999999999999999999997642 2368999999999999999976 899999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8754
No 230
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=5.5e-13 Score=124.18 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=68.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.+++|||+|||.++++++|+++|++||.|.++.+. +++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 45899999999999999999999999999997653 3579999999999999999976 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 231
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.39 E-value=6.7e-13 Score=133.24 Aligned_cols=144 Identities=16% Similarity=0.165 Sum_probs=126.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHH
Q 001060 363 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 442 (1169)
Q Consensus 363 l~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~ 442 (1169)
+..+...|++++++..|++++...|.++..|+.+|.++...|++++|+..|++++++. |+++.+|+.+|.++...|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3444567889999999999999999999999999999999999999999999999988 899999999999999999999
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001060 443 GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL-YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 515 (1169)
Q Consensus 443 ~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~i-y~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g 515 (1169)
+|+..|+++ ++++|++..+|+.++.++.+.|+++++... +++|+++.|.+ +.+|...+.++.. .|
T Consensus 83 ~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~------~~~~~l~~~ll~~-~G 148 (150)
T 4ga2_A 83 KAVECYRRS-VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS------PAVYKLKEQLLDC-EG 148 (150)
T ss_dssp HHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC------HHHHHHHHHHHHT-CC
T ss_pred HHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHH-hC
Confidence 999999998 899999999999999999999999776555 69999998743 6777777777554 55
No 232
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.39 E-value=8.7e-13 Score=124.34 Aligned_cols=75 Identities=25% Similarity=0.388 Sum_probs=68.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||.++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+.. ++..|+|+.|+|++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356899999999999999999999999999997653 58999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98754
No 233
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.38 E-value=4.1e-11 Score=134.46 Aligned_cols=231 Identities=9% Similarity=0.013 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhccCCHHHH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG--DFNKVVKLYERCLIACANYPEYW 393 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~g--d~~~a~~lyeraL~~~~~~~e~W 393 (1169)
.+.....+....+..++++..++++|. ++|....+|..-...+...+ ++++++.+++++|..+|.+..+|
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~--------~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW 106 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGIN--------ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIW 106 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--------HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHH
Confidence 344444444444555789999999999 89999999999999988888 99999999999999999999999
Q ss_pred HHHHHHH----HHc---CChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHH--HHHHHHHHHhhhcCCChHHHHH
Q 001060 394 IRYVLCM----EAS---GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID--GARAAYQLVHTETSPGLLEAII 464 (1169)
Q Consensus 394 ~~~a~~l----~~~---g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~--~A~~~~~~a~~~~~P~~~~~~~ 464 (1169)
.....++ ... +++++++.+++++++++ |++..+|.....++...|.++ ++++.++++ ++.+|.+..+|.
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~-i~~d~~N~sAW~ 184 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKV-IDTDLKNNSAWS 184 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH-HHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHH-HHhCCCCHHHHH
Confidence 9999988 666 78999999999999988 899999999999999999988 999999998 789999999999
Q ss_pred HHHHHHHHcCC------HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHhhhc---CCC
Q 001060 465 KHANMERRLGN------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN-AEKARQILVDSLDHV---QLS 534 (1169)
Q Consensus 465 ~~a~~e~r~g~------~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~-~e~Ar~i~~kAl~~~---p~s 534 (1169)
.++.+..+.+. ++++...++++|...|.+ ...|.....++.. .|. .++...+++++++.. +.+
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n------~SaW~y~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~s 257 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN------PSTWNYLLGIHER-FDRSITQLEEFSLQFVDLEKDQVTS 257 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHH-TTCCGGGGHHHHHTTEEGGGTEESC
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC------ccHHHHHHHHHHh-cCCChHHHHHHHHHHHhccCCCCCC
Confidence 99999988887 899999999999998753 5688777666665 554 666778888888876 788
Q ss_pred HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001060 535 KPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 566 (1169)
Q Consensus 535 ~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~ 566 (1169)
...+..++......++ .+.+..+|+++..
T Consensus 258 ~~al~~la~~~~~~~~---~~~A~~~~~~l~~ 286 (306)
T 3dra_A 258 SFALETLAKIYTQQKK---YNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC---HHHHHHHHHHHHh
Confidence 8888877777766665 6778899999876
No 234
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.5e-12 Score=118.72 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=66.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|+ ++|+++|+++|++||.|..|.| ++++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-------~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-------DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-------ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-------cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5689999996 8999999999999999999764 24679999999999999999976 899999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8754
No 235
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.38 E-value=1.2e-10 Score=131.40 Aligned_cols=237 Identities=9% Similarity=-0.034 Sum_probs=192.5
Q ss_pred HHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 331 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD----------FNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 331 ~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd----------~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
++++..++.+|. ++|....+|..-...+...+. +++.+.+++.+|..+|.+..+|.....++
T Consensus 47 ~eaL~~t~~~L~--------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 47 ESVLELTSQILG--------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 468899999998 899999999998777665544 67899999999999999999999999999
Q ss_pred HHcC--ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc----
Q 001060 401 EASG--SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD-IDGARAAYQLVHTETSPGLLEAIIKHANMERRL---- 473 (1169)
Q Consensus 401 ~~~g--~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~-~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---- 473 (1169)
...+ .+++++.++.++++++ |++..+|.....+....|. ++++++.+.++ ++.+|.+..+|..++.+..+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~-I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL-ITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 8888 4899999999999988 8999999999999999998 69999999998 789999999999999988877
Q ss_pred ----------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHhhhcCC
Q 001060 474 ----------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS----------RNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 474 ----------g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~----------g~~e~Ar~i~~kAl~~~p~ 533 (1169)
+.++++..++.++|...|++ ..+|..+-.++.... +.++++++.++++++..|+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d------~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 45889999999999998754 557754444433322 3489999999999999999
Q ss_pred CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001060 534 SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 595 (1169)
Q Consensus 534 s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 595 (1169)
+.-.+...+.+...+......+.++..+++.+..+|.. -.+|.+++.++.
T Consensus 271 ~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r------------~~~y~d~~~~~~ 320 (331)
T 3dss_A 271 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR------------AAYLDDLRSKFL 320 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG------------HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch------------hhHHHHHHHHHH
Confidence 98777777766554332222456788888888876532 345666665554
No 236
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=4.9e-11 Score=138.78 Aligned_cols=314 Identities=11% Similarity=0.060 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH----hCCHHHHH---------HHHHHHHh
Q 001060 100 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL---CYGYWKKYADHEAR----VGSMDKVV---------EVYERAVQ 163 (1169)
Q Consensus 100 ~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~---~~~~W~~~a~~e~~----~~~~e~A~---------~l~eraL~ 163 (1169)
+.|+..+. ++++++|..+++.+...... +..+.+.|..+..+ .+.+..+. +.+++.-.
T Consensus 17 ~~wy~~i~------~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 17 NEWYKMIR------QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHH------HcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 45666555 36899999999988765543 45555444433332 23333333 55555432
Q ss_pred cc-CCC----HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001060 164 GV-TYS----VDIWLHYCIFAINTYGDPETIRRLFERGLAYVG---TDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 235 (1169)
Q Consensus 164 ~~-P~s----~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g---~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~ 235 (1169)
.. +.+ ..+|+..+.+.. ..|++++|+..|++|+.... .+.....++...+.+....++++.|...|++++.
T Consensus 91 ~~~~~~~~l~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 91 PQKKLTGLLKYYSLFFRGMYEF-DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 21 111 113444455555 78999999999999998643 2222345666777777788999999999999876
Q ss_pred cchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001060 236 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 315 (1169)
Q Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k 315 (1169)
+-..... + ......
T Consensus 170 ~~~~~~~-----~-------------------------------------------------------------~~~~~~ 183 (378)
T 3q15_A 170 IYQNHPL-----Y-------------------------------------------------------------SIRTIQ 183 (378)
T ss_dssp HHHTSTT-----C-------------------------------------------------------------HHHHHH
T ss_pred HHHhCCC-----c-------------------------------------------------------------hhhHHH
Confidence 5221000 0 000011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hccCCH
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI-----ACANYP 390 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~-----~~~~~~ 390 (1169)
....++.+|...+++++|+..|+++|.. +............+..++..+...|++++|+..|++++. ..+...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALEL--AMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 2334466788889999999999999861 000011123446788888899999999999999999999 677778
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc----cChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhcCCChHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVK----RLPEIHLFAARFKEQNGD---IDGARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p----~~~~l~~~~a~~~e~~g~---~~~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
.++..++.++...|++++|...|++++++... .....+..++.++...++ +.+|+..+++. ...+....++
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--~~~~~~~~~~ 339 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--CChhHHHHHH
Confidence 89999999999999999999999999998632 122334445666667777 88898888873 4456667788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 464 IKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 464 ~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
..++.++...|++++|...|+++++..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
No 237
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.38 E-value=4.5e-13 Score=128.99 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=68.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCee--eeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK--PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~--~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.++|||+|||+++|+++|+++|++| .|. .|.| ++++. |+++|||||+|.+.++|.+||+.++..|+||.|+|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i-~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITL-PVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEEC-CCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEE-EECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 45889999999999999999999999 566 6654 44554 9999999999999999999999888999999999987
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
+.+
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 643
No 238
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=3.4e-10 Score=131.05 Aligned_cols=236 Identities=12% Similarity=0.054 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-----CHHHHHHH
Q 001060 322 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-----YPEYWIRY 396 (1169)
Q Consensus 322 ~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~-----~~e~W~~~ 396 (1169)
.+|...+++++++..|++++...--...+..+.....+..++..+...|++++|+.+|++++..++. ....|..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 3445556666666666666541000000011334456667777888899999999999999998764 34678889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHhhc-cChHHHH-----HHHHHHHHcCCHHHHHHHHHHHhhhcCCCh----HHHHHHH
Q 001060 397 VLCMEASGSMDLAHNALARATHVFVK-RLPEIHL-----FAARFKEQNGDIDGARAAYQLVHTETSPGL----LEAIIKH 466 (1169)
Q Consensus 397 a~~l~~~g~~e~A~~vl~rAl~~~~p-~~~~l~~-----~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~----~~~~~~~ 466 (1169)
+.++...|++++|...+++++.+... ..+..|. ..+.++...|++++|+..++++ ....+.. ...+..+
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT-AKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS-CCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC-CCCCCCcchhhHHHHHHH
Confidence 99999999999999999999987522 2222333 2345577899999999999997 5555542 3357788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHh
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 546 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~ 546 (1169)
+.++...|++++|..++++++...+..........++..++..+.. .|+.++|+..|++++...+.. .+..+..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~~~~-----g~~~~~~ 333 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ-AGRKSDAQRVLLDALKLANRT-----GFISHFV 333 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHH-----CCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhccc-----cHHHHHH
Confidence 9999999999999999999998765322111223466777887776 999999999999999875421 1222222
Q ss_pred hCCChhHHHHHHHHHHHHhhcCC
Q 001060 547 IQSSPKQIDFLEQLVDKFLMSNS 569 (1169)
Q Consensus 547 ~~~~~~~~~~~r~l~eral~~~~ 569 (1169)
..| +.+..++.+++...+
T Consensus 334 ~~g-----~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 334 IEG-----EAMAQQLRQLIQLNT 351 (373)
T ss_dssp TTH-----HHHHHHHHHHHHTTC
T ss_pred Hcc-----HHHHHHHHHHHhCCC
Confidence 221 335666777666544
No 239
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-12 Score=120.95 Aligned_cols=77 Identities=19% Similarity=0.423 Sum_probs=68.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee--ceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA--GRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~--g~~l~V~ 1108 (1169)
+.++|||+|||.++|+++|+++|++||.|..+.+ +. .+|||||+|.+.++|.+||+. ++..|+ |+.|+|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~-~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH-VK------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-CS------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eC------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 4589999999999999999999999999999764 21 268999999999999999986 899999 9999999
Q ss_pred eccCCCC
Q 001060 1109 ERRPNTG 1115 (1169)
Q Consensus 1109 ~~r~~~~ 1115 (1169)
+++++++
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9988643
No 240
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.37 E-value=1.1e-11 Score=136.09 Aligned_cols=226 Identities=11% Similarity=0.033 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------cCCHHHHHHHHHHHH
Q 001060 330 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--------ANYPEYWIRYVLCME 401 (1169)
Q Consensus 330 ~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~--------~~~~e~W~~~a~~l~ 401 (1169)
+++++..+++.+. +.++.....|..++..+...|++++|+..|++++... +....+|..++.++.
T Consensus 24 ~~~al~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (283)
T 3edt_B 24 CKQALEDLEKTSG-------HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 96 (283)
T ss_dssp HHHHHHHHHHHHC-------SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 3445555665543 1346778899999999999999999999999999885 556779999999999
Q ss_pred HcCChHHHHHHHHHHHHHh-------hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--------CCChHHHHHHH
Q 001060 402 ASGSMDLAHNALARATHVF-------VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET--------SPGLLEAIIKH 466 (1169)
Q Consensus 402 ~~g~~e~A~~vl~rAl~~~-------~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~--------~P~~~~~~~~~ 466 (1169)
..|++++|+..|++++.+. .+....++..++.++...|++++|+.+|+++ +++ .|....++..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA-LEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHH
Confidence 9999999999999999874 2556788999999999999999999999998 555 67778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCC---ccCchHHHHHHHHHHHHHHhC------CHHHHHHHHHHHhhhcCCCHHH
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKE---HSQTLPMLYAQYSRFLHLVSR------NAEKARQILVDSLDHVQLSKPL 537 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~---~~~~~~~l~~~~a~~~~~~~g------~~e~Ar~i~~kAl~~~p~s~~l 537 (1169)
+.++.+.|++++|+.+|++++...+... .......+|.....+... .+ .+.++..+++......|.....
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES-KDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT-TCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999999998743210 001111233333333221 11 1333333333333333444455
Q ss_pred HHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 538 LEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 538 ~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
+..++.+....++ .+.+..+|++++..
T Consensus 255 ~~~la~~~~~~g~---~~~A~~~~~~al~~ 281 (283)
T 3edt_B 255 LRSLGALYRRQGK---LEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 5556666655555 44566666666553
No 241
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.37 E-value=7.6e-12 Score=140.39 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCCh-hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-----
Q 001060 316 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----- 389 (1169)
Q Consensus 316 ~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~-~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~----- 389 (1169)
+......+|...+++++|+..|++++.- +... -++ .....|..++..+...|++++|+..|++++...+..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~-~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADY-QKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHH-HHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444567888999999999999999871 0000 122 235788899999999999999999999999987643
Q ss_pred -HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH-
Q 001060 390 -PEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE- 461 (1169)
Q Consensus 390 -~e~W~~~a~~l~~~-g~~e~A~~vl~rAl~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~- 461 (1169)
...|..++.++... |++++|+..|++|+++.+... ..++..++.++.+.|++++|+.+|+++ +++.|++..
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~ 194 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL-IKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHhcCCcc
Confidence 46899999999996 999999999999999884321 467888999999999999999999998 677776532
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhhcCCC
Q 001060 462 ------AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH-LVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 462 ------~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~-~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.|+.++.++..+|++++|+..|++++.+.|....... ..++..++..+. ...+++++|...|++++.++|..
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE-SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH-HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 6788999999999999999999999998874321111 112333333322 12457999999999999888866
Q ss_pred HHHHH
Q 001060 535 KPLLE 539 (1169)
Q Consensus 535 ~~l~~ 539 (1169)
..++.
T Consensus 274 ~~~~~ 278 (292)
T 1qqe_A 274 ITILN 278 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 242
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2e-12 Score=116.23 Aligned_cols=74 Identities=23% Similarity=0.429 Sum_probs=66.5
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeceEEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVYIE 1108 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~g~~l~V~ 1108 (1169)
.+.++|||+|||.++++++|+++|++||.|..+.+. + ++|||||+|.+.++|.+|+.. ++..|+|+.|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-Q------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-G------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-C------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 356899999999999999999999999999997652 2 468999999999999999984 7999999999999
Q ss_pred ecc
Q 001060 1109 ERR 1111 (1169)
Q Consensus 1109 ~~r 1111 (1169)
++|
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 875
No 243
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.37 E-value=1.4e-11 Score=135.41 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC---CHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN---YPEYWIR 395 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~---~~e~W~~ 395 (1169)
.++..+...+++++|+..|+++|+. .|.++.....|..++..+.+.|++++|+..|++++...|. .+++|+.
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3456788899999999999999982 2333333889999999999999999999999999999874 4678999
Q ss_pred HHHHHHH--------cCChHHHHHHHHHHHHHhhccChHHH-----------------HHHHHHHHHcCCHHHHHHHHHH
Q 001060 396 YVLCMEA--------SGSMDLAHNALARATHVFVKRLPEIH-----------------LFAARFKEQNGDIDGARAAYQL 450 (1169)
Q Consensus 396 ~a~~l~~--------~g~~e~A~~vl~rAl~~~~p~~~~l~-----------------~~~a~~~e~~g~~~~A~~~~~~ 450 (1169)
++.++.. .|++++|+..|++++..+ |+++.++ +.+|.++...|++++|+..|++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999 999999999999999988 7776666 7789999999999999999999
Q ss_pred HhhhcCCC---hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhhhCC
Q 001060 451 VHTETSPG---LLEAIIKHANMERRL----------GNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 451 a~~~~~P~---~~~~~~~~a~~e~r~----------g~~e~A~~iy~~Al~~~~~~ 493 (1169)
+ ++..|+ ...+|+.++.++..+ |++++|+.+|++++...|+.
T Consensus 174 ~-l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 174 V-FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp H-HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred H-HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 8 777888 677899999998877 89999999999999998753
No 244
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.36 E-value=2.6e-11 Score=130.24 Aligned_cols=173 Identities=9% Similarity=0.003 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChH---HHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE---IHL 429 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~---l~~ 429 (1169)
...|...+..+.+.|++++|+..|++++...|.+ .++|+.++.++...|++++|+..|+++++.+ |+++. +++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 3567777777788999999999999999998876 4799999999999999999999999999988 66654 677
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcC
Q 001060 430 FAARFKEQ------------------NGDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLG 474 (1169)
Q Consensus 430 ~~a~~~e~------------------~g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g 474 (1169)
.++.++.. .|++++|+..|+++ ++..|++..++ +..+.++.+.|
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL-VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHH-HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH-HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77777665 46788888888887 77788876554 33444555555
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 475 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 475 ~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
++++|+..|+++++..|+. +..+.++..++..+.+ .|++++|++.|++++...|++
T Consensus 162 ~~~~A~~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~-~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDT---QATRDALPLMENAYRQ-MQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCCSCC
T ss_pred cHHHHHHHHHHHHHHCcCC---CccHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhhCCCc
Confidence 5555555555555555431 1223445555555444 555555555555555555543
No 245
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.36 E-value=8.8e-13 Score=123.81 Aligned_cols=78 Identities=12% Similarity=0.221 Sum_probs=69.0
Q ss_pred eEEEEecC----CCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECC----HHH----HHHHHH--h-CCC
Q 001060 1034 KSVYVRNL----PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFED----ISG----VQNAIQ--A-SPI 1098 (1169)
Q Consensus 1034 ~~i~V~nl----p~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~----~~~----a~~Ai~--~-~~~ 1098 (1169)
..|||+|| |+.+++.+|+++|++||+|.++.+ +.|+.||+++|||||+|.+ +++ |.+||. . ++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~l-i~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEA-FNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEE-EECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 999999999999999999999985 6799999999999999996 322 788887 4 899
Q ss_pred eeeceEEEEEeccC
Q 001060 1099 QLAGRQVYIEERRP 1112 (1169)
Q Consensus 1099 ~i~g~~l~V~~~r~ 1112 (1169)
.|+||.|+|+..+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998764
No 246
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=1e-12 Score=119.11 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=60.6
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||+++|+++|+++|++||.|.+|.|. + ++||||||+|++.++|.++ ....+.++|+.|.|..+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~-~-----~srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIP-K-----PFRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECC-S-----SCCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEe-e-----CCCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEc
Confidence 356899999999999999999999999999997652 2 2789999999999999843 22244556999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 8764
No 247
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.36 E-value=4.1e-12 Score=130.89 Aligned_cols=166 Identities=11% Similarity=0.095 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
.+.+...+..+...|++++|+..|++++...|.+.++|+.++.++...|++++|+.+|++++... | ++.++...+.+.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLE 83 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHH
Confidence 45677888888899999999999999999999999999999999999999999999999999877 5 777776666543
Q ss_pred H-HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001060 436 E-QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 514 (1169)
Q Consensus 436 e-~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~ 514 (1169)
. ..+...+|+..|+++ ++++|++..+|+.++.++...|++++|+..|++++...|.. ..+.++..++.++.. .
T Consensus 84 ~~~~~~~~~a~~~~~~a-l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~a~~~l~~~~~~-~ 157 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQE-LAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA----QDGEVKKTFMDILSA-L 157 (176)
T ss_dssp HHHHHTSCHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT----TTTHHHHHHHHHHHH-H
T ss_pred HHhhcccchHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc----ChHHHHHHHHHHHHH-h
Confidence 2 223344579999998 78999999999999999999999999999999999998642 124578888888776 9
Q ss_pred CCHHHHHHHHHHHhh
Q 001060 515 RNAEKARQILVDSLD 529 (1169)
Q Consensus 515 g~~e~Ar~i~~kAl~ 529 (1169)
|+.++|...|+++|.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999985
No 248
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=2.7e-10 Score=132.50 Aligned_cols=240 Identities=11% Similarity=0.012 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC-------H
Q 001060 318 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-------P 390 (1169)
Q Consensus 318 ~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~-------~ 390 (1169)
-.++..|...+++++|+..|+++++. ....+..+.....+..++.++...|++++|+..|++++...+.. .
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKE--LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH--HhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 34466777889999999999999872 11112234567788888999999999999999999999886532 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----cCCChH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVHTE-----TSPGLL 460 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-----~~P~~~ 460 (1169)
.++..+|.++...|++++|...|++|+.+... ....++..+|.++...|++++|+..|+++ ++ .+|...
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA-AKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhCChhHH
Confidence 57889999999999999999999999997631 13457888999999999999999999998 55 678888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC---HHHHHHHHHHHhhhcCCCHHH
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN---AEKARQILVDSLDHVQLSKPL 537 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~---~e~Ar~i~~kAl~~~p~s~~l 537 (1169)
.++..++.++.++|++++|+.+|++++.+...... +.....+..+..+ +...++ +.+|..++++. ...+....+
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l~~l-y~~~~~~~~~~~al~~~~~~-~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH-KFYKELFLFLQAV-YKETVDERKIHDLLSYFEKK-NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC-SCHHHHHHHHHHH-HSSSCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHhC-CChhHHHHH
Confidence 89999999999999999999999999998653222 2222233333333 333666 78888887763 233334456
Q ss_pred HHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001060 538 LEALIHFESIQSSPKQIDFLEQLVDKFLM 566 (1169)
Q Consensus 538 ~~~~a~~E~~~~~~~~~~~~r~l~eral~ 566 (1169)
+..++.+-...++ .+.+...|++++.
T Consensus 339 ~~~la~~y~~~g~---~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCH---FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence 6667777777776 5557777777765
No 249
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.35 E-value=2.1e-12 Score=135.77 Aligned_cols=82 Identities=17% Similarity=0.354 Sum_probs=73.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEeccC
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r~ 1112 (1169)
.++|||+|||.++|+++|+++|++||.|..+.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|.|.++.+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI-MTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE-eecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 479999999999999999999999999999875 5677789999999999999999999999899999999999999987
Q ss_pred CCC
Q 001060 1113 NTG 1115 (1169)
Q Consensus 1113 ~~~ 1115 (1169)
+..
T Consensus 183 k~~ 185 (196)
T 1l3k_A 183 KQE 185 (196)
T ss_dssp ---
T ss_pred hhH
Confidence 653
No 250
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1e-12 Score=119.05 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=63.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||.++|+++|+++|++||.|.+|.|. + .++|||||+|.+.++|++++. ..+.++|+.|+|..++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~-----~~~g~afV~f~~~~~a~~~~~-~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP-K-----PFRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECC-S-----SCCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEe-c-----CCCCEEEEEECCHHHHHHHhc-CCceeCCEEEEEEecC
Confidence 35899999999999999999999999999997642 2 267999999999999986533 2566689999999988
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 251
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.6e-12 Score=123.29 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=67.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++++++|+++|++||.|..|.| . +++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i--~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL--P-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC--C-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--e-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5689999999999999999999999999998653 2 2568999999999999999986 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+..
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 764
No 252
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.33 E-value=2.6e-12 Score=122.71 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=69.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||.++|+++|+++|++||.|..|.+. + ++.++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~-~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG-N---TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE-C---STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-e---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45899999999999999999999999999997653 2 345689999999999999999985 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 764
No 253
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.33 E-value=4.1e-11 Score=131.57 Aligned_cols=232 Identities=12% Similarity=0.054 Sum_probs=173.0
Q ss_pred HcCChHHHHHHHHHHHHhc--------cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------hccChHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIAC--------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVF-------VKRLPEIHLFAA 432 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~--------~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~-------~p~~~~l~~~~a 432 (1169)
..|++++|+.+|++++..+ +....+|..++.++...|++++|+..|++++.+. .+....++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4578888888888888854 4567899999999999999999999999999874 245677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC--CccCchHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTET--------SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK--EHSQTLPML 502 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~--------~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~--~~~~~~~~l 502 (1169)
.++...|++++|+.+|+++ +++ .|....+|..++.++...|++++|+.+|++++...... ...+....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRA-LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHH-HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999998 444 57778899999999999999999999999999983110 012334567
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhh---------cCCCHHHHHHHHHhHhhCCChhH---HHHHHHHHHHHhhcCCC
Q 001060 503 YAQYSRFLHLVSRNAEKARQILVDSLDH---------VQLSKPLLEALIHFESIQSSPKQ---IDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 503 ~~~~a~~~~~~~g~~e~Ar~i~~kAl~~---------~p~s~~l~~~~a~~E~~~~~~~~---~~~~r~l~eral~~~~~ 570 (1169)
+..++.++.. .|++++|+.+|+++++. .+....+|.....+....+.... ...+..+++.+.. +
T Consensus 172 ~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 247 (283)
T 3edt_B 172 KNNLASCYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---D 247 (283)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC---C
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC---C
Confidence 8888988877 99999999999999986 33444555555555544332221 1122222222111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001060 571 SPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 610 (1169)
Q Consensus 571 ~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~ 610 (1169)
......++..........|+.+.+.+++++..+.
T Consensus 248 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 248 ------SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1234567888888889999999999999888765
No 254
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.32 E-value=3e-11 Score=128.24 Aligned_cols=163 Identities=10% Similarity=0.064 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHH----------------HHHHHHHcCChHHHHHHHHHH
Q 001060 319 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN----------------YLDFIERDGDFNKVVKLYERC 382 (1169)
Q Consensus 319 ~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~----------------yl~~~~~~gd~~~a~~lyera 382 (1169)
.++..+...+++++|+..|+++|+ ++|.+...|.. ++..+.+.|++++|+..|+++
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIA--------LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345567788999999999999999 78999999999 999999999999999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhcCCChH
Q 001060 383 LIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD--IDGARAAYQLVHTETSPGLL 460 (1169)
Q Consensus 383 L~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~--~~~A~~~~~~a~~~~~P~~~ 460 (1169)
|..+|.+.++|+.++.++...|++++|+..|++++++. |+++.+|+.++.++...|+ ...+...|.++ ....| ..
T Consensus 81 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~ 157 (208)
T 3urz_A 81 LQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL-SSPTK-MQ 157 (208)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCH-HH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCCCc-hh
Confidence 99999999999999999999999999999999999988 8999999999998866553 45566777775 33222 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
..|+..+......|++++|+..|++|+.+.|+
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 35777788888899999999999999999864
No 255
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=129.63 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=71.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeE----EeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV----FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1106 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i----~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~ 1106 (1169)
+.++|||+|||+++|+++|+++|++||.|..+.+ .++...+|+++|||||+|.+.++|.+||.. ++..|+|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4589999999999999999999999999987511 122235788999999999999999999985 99999999999
Q ss_pred EEeccCCC
Q 001060 1107 IEERRPNT 1114 (1169)
Q Consensus 1107 V~~~r~~~ 1114 (1169)
|+++++..
T Consensus 124 V~~a~~~~ 131 (143)
T 3egn_A 124 VQFARSAR 131 (143)
T ss_dssp EEECCCSC
T ss_pred EEECCCCC
Confidence 99998753
No 256
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.31 E-value=3.6e-11 Score=148.23 Aligned_cols=162 Identities=12% Similarity=0.049 Sum_probs=133.0
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001060 369 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 448 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 448 (1169)
.|++++|+..|++++...|.+.++|+.++.++...|++++|+..|++++++. |++..+|+.+|.++...|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999987 889999999999999999999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---CCHHHHHHHHH
Q 001060 449 QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS---RNAEKARQILV 525 (1169)
Q Consensus 449 ~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~---g~~e~Ar~i~~ 525 (1169)
+++ ++++|++..+|+.++.++.+.|++++|+..|+++++..|. .+.++..++.++.. . |++++|+..|+
T Consensus 81 ~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 81 QQA-SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE------EPYITAQLLNWRRR-LCDWRALDVLSAQVR 152 (568)
T ss_dssp HHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCCTTHHHHHHHHH
T ss_pred HHH-HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-hhccccHHHHHHHHH
Confidence 998 7889999999999999999999999999999999999863 26788889988877 8 99999999999
Q ss_pred HHhhhcCCCHHHHH
Q 001060 526 DSLDHVQLSKPLLE 539 (1169)
Q Consensus 526 kAl~~~p~s~~l~~ 539 (1169)
++++..|.+...+.
T Consensus 153 ~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 153 AAVAQGVGAVEPFA 166 (568)
T ss_dssp HHHHHTCCCSCHHH
T ss_pred HHHhcCCcccChHH
Confidence 99999998765543
No 257
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.31 E-value=4.9e-12 Score=132.89 Aligned_cols=82 Identities=18% Similarity=0.366 Sum_probs=75.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+.++..|+|+.|.|..+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVV-MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 35799999999999999999999999999999875 56777899999999999999999999999999999999999987
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
.++
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 654
No 258
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.31 E-value=7.2e-12 Score=125.03 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=68.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec--eEEEEEe
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIEE 1109 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~~ 1109 (1169)
..+|||+||++.+|+++|+++|++||.|++|.|. .+ +++|||||+|.+.++|.+|++. +|..|.| +.|+|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~--~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF--TK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEE--ES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEE--eC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4789999999999999999999999999997652 22 2578999999999999999987 8999965 9999999
Q ss_pred ccCCCC
Q 001060 1110 RRPNTG 1115 (1169)
Q Consensus 1110 ~r~~~~ 1115 (1169)
++++.-
T Consensus 121 Ak~~~l 126 (164)
T 1sjr_A 121 SKLTSL 126 (164)
T ss_dssp CSSSSC
T ss_pred ecCCcc
Confidence 998643
No 259
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.31 E-value=5.2e-12 Score=134.78 Aligned_cols=81 Identities=25% Similarity=0.325 Sum_probs=73.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++|+++|+++|++||.|.+|+| ++++.+|+++|||||+|.+.++|.+||+. ++..+.|+.|+|..+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE-ecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4589999999999999999999999999999875 67888999999999999999999999987 899999999999887
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 260
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.4e-12 Score=119.09 Aligned_cols=78 Identities=12% Similarity=0.110 Sum_probs=67.0
Q ss_pred CCceEEEE--ecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee-----ec
Q 001060 1031 GEVKSVYV--RNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-----AG 1102 (1169)
Q Consensus 1031 ~~~~~i~V--~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i-----~g 1102 (1169)
.+.++||| +||++++|+++|+++|++||.|.+|.| .. .||||||+|.+.++|.+|++. +|..| .|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i--~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC--CT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE--eC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 35688999 679999999999999999999998643 21 368999999999999999986 89988 78
Q ss_pred eEEEEEeccCCCC
Q 001060 1103 RQVYIEERRPNTG 1115 (1169)
Q Consensus 1103 ~~l~V~~~r~~~~ 1115 (1169)
+.|.|.+++..+-
T Consensus 96 ~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 96 ITLYLNFVEKVQW 108 (114)
T ss_dssp EECEEEEESCCCC
T ss_pred cEEEEEecccCcc
Confidence 9999999886543
No 261
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.30 E-value=5.6e-12 Score=129.82 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=73.2
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.++++|||+|||+++++++|+++|++||.|+.|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEE-CCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45799999999999999999999999999999875 4455 889999999999999999999986 89999999999998
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8653
No 262
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=1.3e-09 Score=126.21 Aligned_cols=285 Identities=9% Similarity=0.014 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH--
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP-- 390 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~--~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~-- 390 (1169)
.....+..++...+++++++..+++++.. .|.+.. ....+..++..+...|++++++..|++++...+...
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEE-----LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 45555667788889999999999999873 122211 223556667777889999999999999998865432
Q ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc-------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-
Q 001060 391 ----EYWIRYVLCMEASGSMDLAHNALARATHVFVK-------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG- 458 (1169)
Q Consensus 391 ----e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p-------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~- 458 (1169)
..+..++.++...|++++|+..|++++.+... ....++..++.++...|++++|+.+|+++ +++.+.
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~ 168 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG-IEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTTTS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHhhcc
Confidence 23567788888999999999999999987631 23456777899999999999999999998 555543
Q ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH--HHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 459 ----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 459 ----~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~--~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
....+..++.++...|++++|+.++++++...+.... +...... ...+.++.. .|++++|+..+++++...+
T Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY-HSDWISNANKVRVIYWQM-TGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHSCCCCC
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHH-CCCHHHHHHHHHhCCCCCC
Confidence 3567888999999999999999999999987543211 1101111 122333344 8999999999999998776
Q ss_pred CC----HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001060 533 LS----KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHA 608 (1169)
Q Consensus 533 ~s----~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~ 608 (1169)
.+ ...+..++.+....++ .+.+..++++++....... ......+++..........|+.+.+....++..
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGE---FEPAEIVLEELNENARSLR---LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCc---chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 53 2234566666666676 4446666666655422111 122334466666777778899999999999998
Q ss_pred hhhCC
Q 001060 609 RLFLP 613 (1169)
Q Consensus 609 ~~~~~ 613 (1169)
++...
T Consensus 321 ~~~~~ 325 (373)
T 1hz4_A 321 KLANR 325 (373)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 88653
No 263
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.30 E-value=3.1e-11 Score=135.04 Aligned_cols=170 Identities=11% Similarity=-0.034 Sum_probs=150.7
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a 432 (1169)
|...+.++..+..+...|++++|+.+|+++|...|.+.++|+.++.++...|++++|+.+|++++... |+....++..+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-QDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-CSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-cchHHHHHHHH
Confidence 45567888899888999999999999999999999999999999999999999999999999999887 66555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
..+.+.++.++|...|+++ ++++|++..+++.++.++...|++++|+..|++++...|+. ....++..++.++..
T Consensus 193 ~~l~~~~~~~~a~~~l~~a-l~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~----~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQ-VAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA----ADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----GGGHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHH-HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----ccchHHHHHHHHHHH
Confidence 6677788888999999998 78899999999999999999999999999999999998742 125678888888776
Q ss_pred HhCCHHHHHHHHHHHhh
Q 001060 513 VSRNAEKARQILVDSLD 529 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~ 529 (1169)
.|+.++|...|+++|.
T Consensus 268 -~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 -LGTGDALASXYRRQLY 283 (287)
T ss_dssp -HCTTCHHHHHHHHHHH
T ss_pred -cCCCCcHHHHHHHHHH
Confidence 9999999999999985
No 264
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=6e-12 Score=115.91 Aligned_cols=78 Identities=10% Similarity=0.201 Sum_probs=68.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++++++|+++|++||.|..++.++.++.+| .|||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 458999999999999999999999999999974335555443 499999999999999985 999999999999999
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 876
No 265
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.30 E-value=3.4e-11 Score=116.85 Aligned_cols=118 Identities=12% Similarity=0.059 Sum_probs=109.0
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
++|...+.|+..+..+.+.|++++|+..|+++|..+|.++.+|..++.++...|++++|+..|++++++. |++..+|+.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence 7888899999999998999999999999999999999999999999999999999999999999999987 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
+|.++...|++++|+..|+++ ++++|++.+++..++.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDA-LQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHHCcCCHHHHHHHHHhc
Confidence 999999999999999999998 789999999888777653
No 266
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.29 E-value=4.8e-12 Score=127.07 Aligned_cols=77 Identities=31% Similarity=0.408 Sum_probs=69.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||+++|+++|+++|++||.|.+|.| +++ ++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-ARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEE-CSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE-eeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4689999999999999999999999999999765 322 579999999999999999985 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++++
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 267
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.29 E-value=1.6e-11 Score=117.98 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=67.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccE-EEEEECCHHHHHHHHHh-CCCeeec--eEEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCY-AFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1108 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~-afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~ 1108 (1169)
.-+|||+||++.+|+++|+++|++||.|.+|.|. . +.+|| |||+|.+.++|.+|++. +|..|.| +.|+|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~-~-----~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-T-----KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEE-E-----ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEE-c-----CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4789999999999999999999999999998653 2 13578 99999999999999987 9999998 899999
Q ss_pred eccCCC
Q 001060 1109 ERRPNT 1114 (1169)
Q Consensus 1109 ~~r~~~ 1114 (1169)
++++..
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998764
No 268
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.6e-11 Score=109.10 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=62.8
Q ss_pred eEEEEecCCCCCCHHH----HHHHHhcC-CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1034 KSVYVRNLPSTVTAFE----IEEEFQNF-GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~----L~~~F~~~-G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
+.|||+|||+.+++++ |+++|++| |+|.+| +| |||||.|.+.++|.+|++. +|..|.||.|+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 4499999999999988 55899999 599874 23 9999999999999999976 999999999999
Q ss_pred EeccCCCC
Q 001060 1108 EERRPNTG 1115 (1169)
Q Consensus 1108 ~~~r~~~~ 1115 (1169)
.+++.++.
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99988754
No 269
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.28 E-value=4.1e-12 Score=129.76 Aligned_cols=80 Identities=20% Similarity=0.372 Sum_probs=74.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEeccC
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r~ 1112 (1169)
.++|||+|||.++|+++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++.++..|+|+.|+|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQL-MLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEEC-CCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 478999999999999999999999999999875 5566789999999999999999999999889999999999999987
Q ss_pred C
Q 001060 1113 N 1113 (1169)
Q Consensus 1113 ~ 1113 (1169)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 270
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.28 E-value=6.3e-12 Score=113.74 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=66.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||+++++++|+++|++| .|.++.+ . +++|||||+|.+.++|.+|++. ++..++|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i--~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV--D-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE--E-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE--e-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 35899999999999999999999999 9998765 2 5789999999999999999985 999999999999998
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 271
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=6.6e-12 Score=119.62 Aligned_cols=78 Identities=24% Similarity=0.392 Sum_probs=66.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCC---cccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD---VVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~---g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~ 1108 (1169)
..++|||+|||+++|+++|+++|++||.|. +. .+.++.+ |+++|||||+|.+.++|.+||+.. ..++|+.+.|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~-~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VD-WPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EE-CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EE-EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 458999999999999999999999999998 54 3555555 799999999999999999999875 35888888876
Q ss_pred eccC
Q 001060 1109 ERRP 1112 (1169)
Q Consensus 1109 ~~r~ 1112 (1169)
..++
T Consensus 84 ~~~~ 87 (114)
T 2dnl_A 84 SSPT 87 (114)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 5543
No 272
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.28 E-value=3.9e-11 Score=138.97 Aligned_cols=311 Identities=11% Similarity=0.100 Sum_probs=150.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001060 115 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 194 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~e 194 (1169)
+++++|+.++++. +....|..+|....+.+++++|++.|.++ .+...|..-+.... ..|++++|+.+|+
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae-~~g~~EeAi~yl~ 85 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHH-hCCCHHHHHHHHH
Confidence 4799999999998 33469999999999999999999999875 34556666666555 6788999999888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHh
Q 001060 195 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVA 274 (1169)
Q Consensus 195 rAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~ 274 (1169)
.+++..+. ..+...++....+.|++.++..+|+. |.. .
T Consensus 86 ~ark~~~~----~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~--~-------------------------------- 123 (449)
T 1b89_A 86 MARKKARE----SYVETELIFALAKTNRLAELEEFING----PNN--A-------------------------------- 123 (449)
T ss_dssp ---------------------------CHHHHTTTTTC----C-------------------------------------
T ss_pred HHHHhCcc----chhHHHHHHHHHHhCCHHHHHHHHcC----CcH--H--------------------------------
Confidence 88874221 23333344444446666666544421 100 0
Q ss_pred hCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChh
Q 001060 275 AAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT 354 (1169)
Q Consensus 275 ~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~ 354 (1169)
.+...+..+...+.+++|+..|..+
T Consensus 124 -----------------------------------------a~~~IGd~~~~~g~yeeA~~~Y~~a-------------- 148 (449)
T 1b89_A 124 -----------------------------------------HIQQVGDRCYDEKMYDAAKLLYNNV-------------- 148 (449)
T ss_dssp ------------------------------------------------------CTTTHHHHHHHT--------------
T ss_pred -----------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHh--------------
Confidence 1111234556778888888888764
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
..|..+++.+.+.|+++.|+..|+++ .++..|......+...|+++.|..+... +.. .++-...+..+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~----~ad~l~~lv~~ 216 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV----HADELEELINY 216 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT----CHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh----CHhhHHHHHHH
Confidence 46999999999999999999999998 5789999999999999999999766654 223 33444467788
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL--GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~--g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
+++.|.+++|..+|+++ +.+++.+..+|..++.++.+- +++.+.+++|...+.+.+-- .......+|..+..++..
T Consensus 217 Yek~G~~eEai~lLe~a-L~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~-~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 217 YQDRGYFEELITMLEAA-LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL-RAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHHTTCHHHHHHHHHHH-TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH-HHHHTTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHHh
Confidence 99999999999999998 788999999999888877544 45566666666666555400 000113478877666555
Q ss_pred HhCCHHHHHHHHHHHhhh------------cCCCHHHHHHHHHhHhhC
Q 001060 513 VSRNAEKARQILVDSLDH------------VQLSKPLLEALIHFESIQ 548 (1169)
Q Consensus 513 ~~g~~e~Ar~i~~kAl~~------------~p~s~~l~~~~a~~E~~~ 548 (1169)
.++++.|...+-..... .+.+.+++...+.|-...
T Consensus 295 -~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~ 341 (449)
T 1b89_A 295 -YEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 341 (449)
T ss_dssp -TTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred -hchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence 89999998877766544 566778887777777754
No 273
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.8e-11 Score=124.70 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=73.2
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV-MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEE-EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 4589999999999999999999999999999875 56777899999999999999999999985 999999999999987
Q ss_pred c
Q 001060 1111 R 1111 (1169)
Q Consensus 1111 r 1111 (1169)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 274
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.27 E-value=1.4e-11 Score=125.55 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=74.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. ++..++|+.|+|..++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~-~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL-VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 479999999999999999999999999999875 56777899999999999999999999985 9999999999999987
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 275
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.27 E-value=1.1e-11 Score=126.62 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=74.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. ++..++|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRI-MRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 3589999999999999999999999999999865 56777899999999999999999999975 999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
++..
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 7654
No 276
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.26 E-value=8.2e-11 Score=118.05 Aligned_cols=124 Identities=10% Similarity=-0.005 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCh
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 406 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~ 406 (1169)
..++..+-..|++++. ++|.+.+.|..++..+.+.|++++|+..|++++..+|.++.+|+.++.++...|++
T Consensus 15 l~~~~~~~~~l~~al~--------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 86 (151)
T 3gyz_A 15 VIDAINSGATLKDINA--------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86 (151)
T ss_dssp HHHHHHTSCCTGGGCC--------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCCHHHHhC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH
Confidence 3344444455667766 78889999999988888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001060 407 DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 460 (1169)
Q Consensus 407 e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 460 (1169)
++|+..|++++++. |+++.+|+.+|.++...|++++|+..|+++ +++.|+..
T Consensus 87 ~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a-l~l~~~~~ 138 (151)
T 3gyz_A 87 QQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELV-IQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCCCHH
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCHH
Confidence 99999999999887 888999999999999999999999999998 77788754
No 277
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.25 E-value=3.9e-11 Score=123.53 Aligned_cols=159 Identities=11% Similarity=-0.043 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 399 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~ 399 (1169)
+...+...+++++++..|+++++ ++|.+...|..++..+...|++++|+..|++++...| ++.++...+.+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSD--------ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCH--------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence 35567888999999999999998 7899999999999999999999999999999999999 88777666544
Q ss_pred HH-HcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh--HHHHHHHHHHHHHcCCH
Q 001060 400 ME-ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL--LEAIIKHANMERRLGNL 476 (1169)
Q Consensus 400 l~-~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~--~~~~~~~a~~e~r~g~~ 476 (1169)
.. ..+....|+..|++++++. |+++.+|+.++.++...|++++|+..|+++ ++++|+. ..+|..++.++..+|+.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNI-LKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH-HHhCcccChHHHHHHHHHHHHHhCCC
Confidence 32 2233445789999999988 899999999999999999999999999998 7889876 56999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 001060 477 EDAFSLYEQAIAI 489 (1169)
Q Consensus 477 e~A~~iy~~Al~~ 489 (1169)
++|...|+++|..
T Consensus 161 ~~A~~~y~~al~~ 173 (176)
T 2r5s_A 161 NAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9999999999864
No 278
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.25 E-value=1.3e-11 Score=128.98 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=71.1
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
..++|||+|||+++|+++|+++|++||.|..|+| .++ .+|+++|||||+|++.++|.+||...+..|+|+.|.|..++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i-~~~-~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRT-LHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE-EEC-TTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE-EEC-CCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 4589999999999999999999999999999875 334 35889999999999999999999987789999999999876
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 5
No 279
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.25 E-value=1.8e-11 Score=130.63 Aligned_cols=83 Identities=20% Similarity=0.401 Sum_probs=75.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||.++|+++|+++|++||.|..+.| ++++.+|+++|||||+|.+.++|.+|+.. ++..|+|+.|+|.++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL-ARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE-EecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3489999999999999999999999999999875 56777899999999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001060 1111 RPNTG 1115 (1169)
Q Consensus 1111 r~~~~ 1115 (1169)
+++..
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87644
No 280
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.23 E-value=2.1e-11 Score=122.34 Aligned_cols=112 Identities=10% Similarity=-0.019 Sum_probs=105.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001060 88 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 167 (1169)
Q Consensus 88 l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 167 (1169)
|.++++.+|.+.++|+.++..+... |++++|..+|++++..+|.+..+|..++..+...|++++|+..|++++...|.
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNK--GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 5678899999999999999999884 69999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001060 168 SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 202 (1169)
Q Consensus 168 s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~ 202 (1169)
++..|+.++..+. ..|++++|+..|+++++..+.
T Consensus 103 ~~~~~~~lg~~~~-~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 103 DYTPVFHTGQCQL-RLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp CCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC
T ss_pred CcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999998 899999999999999997654
No 281
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.23 E-value=1.7e-10 Score=128.98 Aligned_cols=169 Identities=13% Similarity=-0.007 Sum_probs=146.9
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 465 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 465 (1169)
.|.+.+.++..+..+...|++++|+.+|+++++.. |+++.+++.++.++.+.|++++|+.+|+++ ....|+....++.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~-~~~~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTI-PLQDQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTS-CGGGCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhC-chhhcchHHHHHH
Confidence 38889999999999999999999999999999988 899999999999999999999999999998 7889987777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC--HHHHHHHHH
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS--KPLLEALIH 543 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s--~~l~~~~a~ 543 (1169)
.+..+.+.++.+.|+..|++++...|+ .+.++..++..+.. .|++++|+..|+++++..|++ ...+..++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~------~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE------DAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc------cHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 776677888889999999999999864 37799999999887 999999999999999999998 788888888
Q ss_pred hHhhCCChhHHHHHHHHHHHHhh
Q 001060 544 FESIQSSPKQIDFLEQLVDKFLM 566 (1169)
Q Consensus 544 ~E~~~~~~~~~~~~r~l~eral~ 566 (1169)
+...+|..+ .+...|.++|.
T Consensus 264 ~~~~~g~~~---~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGD---ALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTC---HHHHHHHHHHH
T ss_pred HHHHcCCCC---cHHHHHHHHHH
Confidence 887777533 34555555543
No 282
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.23 E-value=1.7e-11 Score=110.55 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=63.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcC----C-------CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCee
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNF----G-------RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQL 1100 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i 1100 (1169)
+.++|||+|||+++++++|+++|++| | .|.++.+ . +.+|||||+|.+.++|.+|+..++..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~------~~kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-N------QDKNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-C------SSSSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-c------CCCcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999 8 8888654 2 236999999999999999995599999
Q ss_pred eceEEEEEe
Q 001060 1101 AGRQVYIEE 1109 (1169)
Q Consensus 1101 ~g~~l~V~~ 1109 (1169)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 283
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.23 E-value=1.1e-10 Score=143.82 Aligned_cols=155 Identities=21% Similarity=0.160 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChH
Q 001060 328 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 407 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e 407 (1169)
+++++|+..|+++++ ++|.+...|..++..+...|++++|+..|++++...|.+.++|+.++.++...|+++
T Consensus 3 g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR--------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 567888889999988 688889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYE 484 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---g~~e~A~~iy~ 484 (1169)
+|...|++++++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..+|..++.++..+ |++++|...|+
T Consensus 75 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 75 EAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRA-HQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999999987 889999999999999999999999999998 788999999999999999999 99999999999
Q ss_pred HHHHhhhC
Q 001060 485 QAIAIEKG 492 (1169)
Q Consensus 485 ~Al~~~~~ 492 (1169)
++++..|.
T Consensus 153 ~al~~~p~ 160 (568)
T 2vsy_A 153 AAVAQGVG 160 (568)
T ss_dssp HHHHHTCC
T ss_pred HHHhcCCc
Confidence 99999875
No 284
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=1.1e-10 Score=111.91 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=65.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccE-EEEEECCHHHHHHHHHh-CCCeeec--eEEEEEe
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCY-AFVEFEDISGVQNAIQA-SPIQLAG--RQVYIEE 1109 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~-afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~~ 1109 (1169)
..|||+||++.+|+++|+++|++||.|++|.| +. + .|| |||+|.+.++|.+|++. +|..|.| +.|+|++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i-~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI-FK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEE-EE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEE-Ee-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 56789999999999999999999999999865 32 2 276 99999999999999986 8999988 6899999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98764
No 285
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.22 E-value=5.2e-11 Score=119.13 Aligned_cols=119 Identities=8% Similarity=0.016 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 001060 83 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAV 162 (1169)
Q Consensus 83 ~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL 162 (1169)
++...|++++..+|.+.++|..++..+... |++++|..+|++++..+|.+..+|..++.++...|++++|++.|++++
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQS--GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334568899999999999999999998884 699999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001060 163 QGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 163 ~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~ 204 (1169)
...|.+...|+.++..+. ..|++++|+..|+++++..+.++
T Consensus 83 ~l~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLL-QXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCG
T ss_pred hcCCCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 999999999999999998 89999999999999999877654
No 286
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.22 E-value=2.9e-11 Score=127.19 Aligned_cols=82 Identities=21% Similarity=0.428 Sum_probs=75.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|+++
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEE-EECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEE-eecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4589999999999999999999999999999875 55667899999999999999999999986 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 287
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=4.4e-10 Score=107.86 Aligned_cols=133 Identities=23% Similarity=0.317 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e 436 (1169)
+.|..++..+...|++++++.+|++++...+.+...|..++.++...|++++|..+|++++... |....+|+.++.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4688888888899999999999999999999999999999999999999999999999999987 788999999999999
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 437 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 437 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
..|++++|+.+|+++ ++..|.+..+|..++.++.+.|++++|+.+|++++...|
T Consensus 81 ~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKA-LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999998 778999999999999999999999999999999998765
No 288
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.21 E-value=7.5e-12 Score=133.56 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=70.1
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||+.+|+++|+++|++||.|..|+|. ++. +.++|||||+|.+.++|.+||+. +|..|+|+.|+|++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~-~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV-CDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-EET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEee-ccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 3689999999999999999999999999998863 443 34789999999999999999976 9999999999999987
Q ss_pred CC
Q 001060 1112 PN 1113 (1169)
Q Consensus 1112 ~~ 1113 (1169)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 65
No 289
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.21 E-value=3e-11 Score=116.11 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=66.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
++++|||+|+ ++|+++|+++|++||.|.+|.|. +++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 4689999996 69999999999999999997642 4679999999999999999976 999999999999999
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+++.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8754
No 290
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.20 E-value=3.8e-10 Score=127.40 Aligned_cols=203 Identities=13% Similarity=0.059 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhhc---cCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC------HHHHHHHHH
Q 001060 328 KEFDSKIIGFETAIR---RPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY------PEYWIRYVL 398 (1169)
Q Consensus 328 ~~~~~ai~~~e~al~---r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~------~e~W~~~a~ 398 (1169)
++++++...++++.+ ..+|...+....-...+...+..+...|++++|+..|++++.+.+.. ..+|..++.
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555554443 12333222222223345555666778899999999999998886532 457888888
Q ss_pred HHHHcCChHHHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh------HHHHHHHH
Q 001060 399 CMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL------LEAIIKHA 467 (1169)
Q Consensus 399 ~l~~~g~~e~A~~vl~rAl~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~------~~~~~~~a 467 (1169)
++...|++++|+..|++|++++.. ....++..++.++.. |++++|+..|+++ +++.+.. ..++..++
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A-l~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA-AAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHH
Confidence 888889999999999999887632 124577778888887 9999999999987 5554432 46788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 468 NMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 468 ~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.++.++|++++|+.+|++++.+.+...........+...+.+... .|++++|+..|++++ ..|..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH-RADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHh-CCCCC
Confidence 999999999999999999998876432211122345555555544 788999999999999 88754
No 291
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.20 E-value=1.9e-11 Score=124.77 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=71.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEecc
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~r 1111 (1169)
+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|+.. +..++|+.|.|....
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKI-MKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEEC-CCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEccccccc
Confidence 4689999999999999999999999999999874 56777899999999999999999999995 789999999998775
Q ss_pred C
Q 001060 1112 P 1112 (1169)
Q Consensus 1112 ~ 1112 (1169)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 292
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=4.1e-10 Score=120.83 Aligned_cols=166 Identities=11% Similarity=0.041 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH---HHHHH
Q 001060 320 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE---YWIRY 396 (1169)
Q Consensus 320 ~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e---~W~~~ 396 (1169)
+...|...+++++|+..|+++|+. .|.++.....|..++..+.+.|++++|+..|++++...|.++. .|+.+
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 355678889999999999999982 3334444578999999999999999999999999999998864 78888
Q ss_pred HHHHHH------------------cCChHHHHHHHHHHHHHhhccChHHH-----------------HHHHHHHHHcCCH
Q 001060 397 VLCMEA------------------SGSMDLAHNALARATHVFVKRLPEIH-----------------LFAARFKEQNGDI 441 (1169)
Q Consensus 397 a~~l~~------------------~g~~e~A~~vl~rAl~~~~p~~~~l~-----------------~~~a~~~e~~g~~ 441 (1169)
+.++.. .|++++|+..|+++++.+ |+++.++ +.+|.++.+.|++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 877765 468999999999999988 7776555 5678889999999
Q ss_pred HHHHHHHHHHhhhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 442 DGARAAYQLVHTETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 442 ~~A~~~~~~a~~~~~P~~~---~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
++|+..|+++ ++..|++. ++++.++.++.++|++++|+..|++++...|.
T Consensus 164 ~~A~~~~~~~-l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 164 VAVVNRVEGM-LRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHH-HHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHH-HHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 9999999998 78888875 67999999999999999999999999887764
No 293
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.20 E-value=8.1e-09 Score=116.45 Aligned_cols=230 Identities=6% Similarity=-0.060 Sum_probs=179.5
Q ss_pred HHcCChH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 367 ERDGDFN-KVVKLYERCLIACANYPEYWIRYVLCMEASGS----------MDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 367 ~~~gd~~-~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~----------~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
.+.|++. +|+.+++++|..+|.+..+|..-..++...+. +++++.+++.++..+ |++..+|.....++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3456655 89999999999999999999999998877654 678999999999988 89999999999999
Q ss_pred HHcC--CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 436 EQNG--DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN-LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 436 e~~g--~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~-~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
...+ .+++++.++.++ ++++|.+..+|..+..+....|. ++++...++++|..++.+ ...|.+.+.++..
T Consensus 119 ~~l~~~~~~~EL~~~~k~-l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N------~SAW~~R~~ll~~ 191 (331)
T 3dss_A 119 SRLPEPNWARELELCARF-LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQ 191 (331)
T ss_dssp HHCSSCCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHH
Confidence 9988 489999999998 78999999999999999999998 699999999999998643 5578777766665
Q ss_pred Hh-------------CCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhh-CCCh-------hHHHHHHHHHHHHhhcCCCC
Q 001060 513 VS-------------RNAEKARQILVDSLDHVQLSKPLLEALIHFESI-QSSP-------KQIDFLEQLVDKFLMSNSDS 571 (1169)
Q Consensus 513 ~~-------------g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~-~~~~-------~~~~~~r~l~eral~~~~~~ 571 (1169)
.. +.++++.+.+.+++..+|++...|.-...+... .+.. +.++....+++.++...|++
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 21 458999999999999999999999533333222 2211 23466677788888888765
Q ss_pred CCCCCHHHHHHHHHHHHH---HHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 572 PSTANAAEREELSCVFLE---FLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 572 ~~~l~~~~~~~i~~~~l~---fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
. . ++...+- .....|..+.+.....+..++-|-
T Consensus 272 ~--------w-~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 272 K--------W-CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp H--------H-HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred c--------h-HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 2 1 1111111 222356777888888888887664
No 294
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=5.8e-10 Score=106.99 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
++|+.++.++...|++++|..+|+++++.. +.+..+|..++.++...|++++|+.+|+++ .+..|.+..+|..++.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA-LELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHH-HHHCCCchHHHHHHHHHH
Confidence 578899999999999999999999999877 788999999999999999999999999998 778999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.+.|++++|+.+|++++...+. .+.++..++.++.. .|++++|+.+|+++++..|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-HccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999998753 25678888888776 999999999999999988864
No 295
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.19 E-value=1.6e-10 Score=112.15 Aligned_cols=121 Identities=10% Similarity=-0.029 Sum_probs=108.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001060 381 RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 460 (1169)
Q Consensus 381 raL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 460 (1169)
|+...+|...+.|...|..+.+.|++++|+..|++++++. |+++.+|+.+|.++...|++++|+..|+++ ++++|++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~p~~~ 81 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTC-IRLDSKFI 81 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHH-HHhhhhhh
Confidence 4445678888999999999999999999999999999988 899999999999999999999999999998 89999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~ 509 (1169)
.+|+.++.++..+|++++|+..|++++++.|++ +.++..++.+
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~------~~a~~~l~~~ 124 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQVDPSN------EEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC------HHHHHHHHHh
Confidence 999999999999999999999999999998743 5566655543
No 296
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.19 E-value=3.1e-11 Score=123.82 Aligned_cols=77 Identities=22% Similarity=0.459 Sum_probs=71.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
.++|||+|||.++|+++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|+++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEE-EECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEE-EecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 478999999999999999999999999999875 55667899999999999999999999986 999999999999876
No 297
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.18 E-value=7.9e-11 Score=109.91 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=67.8
Q ss_pred CceEEEEecCCC-----CCCHHHHHHHHhcCCCeeeeeEEeecCC-CcccccEEEEEECCHHHHHHHHHh-CCCeeeceE
Q 001060 1032 EVKSVYVRNLPS-----TVTAFEIEEEFQNFGRIKPDGVFVRNRK-DVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1104 (1169)
Q Consensus 1032 ~~~~i~V~nlp~-----~~t~~~L~~~F~~~G~i~~~~i~~~~~~-~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~ 1104 (1169)
+++.|+|+|+.. +-++++|+++|++||.|.+|.| ++++. +++++|||||+|.+.++|.+|+.. +|..|+||.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i-~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVI-FEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEE-EECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEE-ecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 468999999962 2378999999999999999876 34443 468899999999999999999976 999999999
Q ss_pred EEEEeccC
Q 001060 1105 VYIEERRP 1112 (1169)
Q Consensus 1105 l~V~~~r~ 1112 (1169)
|+|+++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99998764
No 298
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.17 E-value=6.8e-11 Score=120.34 Aligned_cols=79 Identities=27% Similarity=0.306 Sum_probs=69.7
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEeccC
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1112 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r~ 1112 (1169)
++|||+|||.++|+++|+++|++||.|.++.+ +++ .+|+++|||||+|.+.++|.+|+.. ++..++|+.|+|..+.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKI-MID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEE-ECC-CC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEE-EEC-CCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 58999999999999999999999999999765 334 3578999999999999999999955 99999999999999876
Q ss_pred CC
Q 001060 1113 NT 1114 (1169)
Q Consensus 1113 ~~ 1114 (1169)
..
T Consensus 79 ~~ 80 (166)
T 3md3_A 79 SQ 80 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 299
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.17 E-value=1.5e-10 Score=111.09 Aligned_cols=109 Identities=19% Similarity=0.272 Sum_probs=94.1
Q ss_pred CChhcHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDF------NKVVKLYERCLIACAN--------YPEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~------~~a~~lyeraL~~~~~--------~~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
..|.+++.|..|++.+++.|+. ++++..|+||+...|. |..+|++||.+.+ .++.++|+++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e-i~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA-IQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH-HHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 4677899999999999999999 9999999999998774 5679999998854 58999999999999
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
+.++ +++..+|+++|+|+.++|++++||+++.++ +.+.|...++
T Consensus 87 ~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~A-iG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKA-VERGAVPLEM 130 (161)
T ss_dssp HHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCBCHHH
T ss_pred HHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHH-hccCCCcHHH
Confidence 9986 888999999999999999999999999998 6677765444
No 300
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.16 E-value=1.7e-10 Score=114.07 Aligned_cols=116 Identities=10% Similarity=0.048 Sum_probs=106.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001060 86 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 165 (1169)
Q Consensus 86 ~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 165 (1169)
..|.++++.+|.+.+.|..++..+... |++++|+.+|++++..+|.+..+|..++.++.+.|++++|+..|++++...
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA--GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 457888999999999999999998884 699999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001060 166 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 204 (1169)
Q Consensus 166 P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~ 204 (1169)
|.+..+|+.++..+. ..|++++|+..|++++...+.++
T Consensus 83 p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 83 INEPRFPFHAAECHL-QLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCG
T ss_pred CCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999988 89999999999999999776543
No 301
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.16 E-value=3.6e-09 Score=119.85 Aligned_cols=245 Identities=7% Similarity=-0.036 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g-~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
.++|..+.....+.+..++++.+++++|..+|.+..+|.....++...+ .+++++..+++++..+ |++..+|.....+
T Consensus 54 ~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 54 KDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444444445455566679999999999999999999999999999988 5999999999999988 8999999999999
Q ss_pred HHHc-C-CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 435 KEQN-G-DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE--------DAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 435 ~e~~-g-~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e--------~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
+... + ++++++.+++++ ++++|.+..+|..+..+..+.+.++ ++...++++|+.++.+ ...|.
T Consensus 133 L~~l~~~~~~~EL~~~~k~-L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N------~SAW~ 205 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGS-LLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN------NSAWG 205 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHH-TSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred HHHhcCCChHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 9887 7 899999999998 7899999999999999998888877 9999999999998643 45787
Q ss_pred HHHHHHHHHhCC-------HHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChh-------------HHHH-HHHHHHH
Q 001060 505 QYSRFLHLVSRN-------AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK-------------QIDF-LEQLVDK 563 (1169)
Q Consensus 505 ~~a~~~~~~~g~-------~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~-------------~~~~-~r~l~er 563 (1169)
+...++.. .+. ++++.+.+++++..+|.+...|..+..+....+... .++. ...+.+.
T Consensus 206 ~R~~lL~~-l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (349)
T 3q7a_A 206 WRWYLRVS-RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF 284 (349)
T ss_dssp HHHHHHTT-STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------
T ss_pred HHHHHHHh-ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHH
Confidence 77666555 555 799999999999999999999976555555444320 0100 1122222
Q ss_pred HhhcCCCC----CCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001060 564 FLMSNSDS----PSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 564 al~~~~~~----~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
++...... ...-+ .-++...++.....|+.+.+.++.++..+-.-+
T Consensus 285 ~~~~~~~~~~~~~~~~s----~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 285 GFPMPSDPLPEDTPLPV----PLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp -CCCCC-CCCSSCCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHhcccccccCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 32221111 00111 124555555555668888888888888655443
No 302
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.15 E-value=1.8e-10 Score=115.20 Aligned_cols=114 Identities=14% Similarity=-0.021 Sum_probs=105.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC
Q 001060 377 KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS 456 (1169)
Q Consensus 377 ~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~ 456 (1169)
..|++++...|.+.+.|+.++..+...|++++|+..|++++.+. |+++.+|+.++.++...|++++|+..|+++ ++++
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYG-AVMD 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHS
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcC
Confidence 46888999999999999999999999999999999999999987 889999999999999999999999999998 7889
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 457 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 457 P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
|++..+|+.++.++..+|++++|+..|++++...|.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999998864
No 303
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.15 E-value=4.9e-11 Score=127.30 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=70.7
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|...
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDM-SWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-CCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEE-eecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 4689999999999999999999999999999875 56677899999999999999999999985 899999999999876
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 304
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.15 E-value=8.7e-11 Score=124.13 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=67.8
Q ss_pred CceEEEEecCC-CCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp-~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++++|||+||| +.+|+++|+++|++||.|.+|+| +++ .+|||||+|.+.++|.+||+. +|..|.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i-~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKF-MKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEE-CTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEE-ecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46899999999 89999999999999999999765 322 369999999999999999985 99999999999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
++..
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8754
No 305
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.14 E-value=8.6e-11 Score=120.97 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=69.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
..++|||+|||.++|+++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|+.. ++..|+|+.|+|+++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE------CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe------cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 46899999999999999999999999998752 56788999999999999999999986 999999999999999
Q ss_pred cCC
Q 001060 1111 RPN 1113 (1169)
Q Consensus 1111 r~~ 1113 (1169)
+++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 876
No 306
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.14 E-value=5.4e-11 Score=116.61 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=84.5
Q ss_pred CCcchhHhHHHHHHHHhhhhCcc-----ccc------cccc---CCceEEEEcCCcccch---hhHHHHHHHHhcCCCcc
Q 001060 718 AYPAQVGSYFVGQYYQVLQQQPD-----LVH------QFYS---DASSMIRVDGDSTESA---SSMLDIHSLVISLNFTA 780 (1169)
Q Consensus 718 ~~~~~vg~~Fv~~YY~~l~~~p~-----~l~------~fY~---~~s~~~~~~g~~~~~~---~~~~~I~~~~~~l~~~~ 780 (1169)
.-+++.+..|++.||..|++.+. .|. ++|. ..++.+.|+|+.+... .+.+.|.+++..||.+.
T Consensus 23 ~~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNGnp~~~~~~~~gr~~fqk~w~~lP~Sq 102 (201)
T 1q42_A 23 QDPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQPIIPSPQEDCKLQFQKKWLQTPLSS 102 (201)
T ss_dssp CCGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTEECCCCSSCCHHHHHHHHHHTSCCEE
T ss_pred CCcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcCcccccccccccHHHHHHHHHhCCCcc
Confidence 46788999999999999998886 888 8883 3345666999988221 45667889999999999
Q ss_pred eeEeeeeccccCC-CceEEEEEEEEEecCccccceeEEEEEEEee
Q 001060 781 IEIKTINSLGSWN-GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824 (1169)
Q Consensus 781 ~~i~~~d~q~~~~-~~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~ 824 (1169)
+.|+++|||+.++ +.+||+|.|.|++++. ..++|.|+|.|..+
T Consensus 103 HqL~SlDahpIpGq~T~lI~asGkVrFDes-gr~~fgQsf~Lta~ 146 (201)
T 1q42_A 103 HQLTSYDGHLIPGTGTFVVHFSAKVRFDQS-GRNRLGESADLFQE 146 (201)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEEEBCS-SCCTTSCCC-----
T ss_pred eeeeeeecceeCCCcEEEEEEeEEEEECCC-CcCcCCCcEEEecc
Confidence 9999999999864 4689999999999987 68999999999865
No 307
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.14 E-value=2.7e-10 Score=112.65 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=86.2
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
++|.....|..++..+...|++++|+.+|++++...|.++.+|+.++.++...|++++|+..|++++.+. |+++.+|+.
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 91 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFH 91 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHH
Confidence 6777777888887777778888888888888888888888888888888888888888888888888776 777788888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
++.++...|++++|+..|+++ +++.|++...
T Consensus 92 lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~ 122 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSA-RALAAAQPAH 122 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHTCGGG
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhCCCCcch
Confidence 888888888888888888876 5666655443
No 308
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.14 E-value=1.3e-10 Score=127.49 Aligned_cols=207 Identities=11% Similarity=-0.041 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhcc-----------
Q 001060 326 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY-------LDFIERDGDFNKVVKLYERCLIACA----------- 387 (1169)
Q Consensus 326 ~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~y-------l~~~~~~gd~~~a~~lyeraL~~~~----------- 387 (1169)
...++..|+..|.+++. ++|...+.|..+ +..+...+...+++..+.+.+...|
T Consensus 18 ~~~d~~~A~~~F~~a~~--------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITN--------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred cCCCHHHHHHHHHHHHH--------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 36788999999999999 899999999999 6777777778888889999888544
Q ss_pred CC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001060 388 NY----------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP 457 (1169)
Q Consensus 388 ~~----------~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P 457 (1169)
.+ .++++.|+..|...|++++|..+|+.++... |... .++..+.++.+.+++++|+..|+++ .. .|
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a-~~-~~ 165 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSA-GK-WP 165 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTG-GG-CS
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHh-hc-cC
Confidence 23 5788889999999999999999999988766 6666 8899999999999999999999987 44 33
Q ss_pred Ch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 458 GL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 458 ~~---~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
+. ..+++.++.++.++|++++|+..|++++.... .+...+..++.++..+.. .|+.++|+.+|++++...|+
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~---~P~~~~da~~~~glaL~~-lGr~deA~~~l~~a~a~~P~- 240 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPA---GEACARAIAWYLAMARRS-QGNESAAVALLEWLQTTHPE- 240 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT---TTTTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSCC-
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC---CccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCc-
Confidence 32 35899999999999999999999999985431 011146678888888877 99999999999999999999
Q ss_pred HHHHHHHHHhHhhCC
Q 001060 535 KPLLEALIHFESIQS 549 (1169)
Q Consensus 535 ~~l~~~~a~~E~~~~ 549 (1169)
...+..+........
T Consensus 241 ~~~~~aL~~~~~~~~ 255 (282)
T 4f3v_A 241 PKVAAALKDPSYRLK 255 (282)
T ss_dssp HHHHHHHHCTTCCCC
T ss_pred HHHHHHHhCCCCCCC
Confidence 988888877776654
No 309
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.13 E-value=2.8e-11 Score=124.65 Aligned_cols=82 Identities=12% Similarity=0.270 Sum_probs=73.4
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEec
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~~ 1110 (1169)
.+.++|||+|||.++|+++|+++|++||.|.. +.+++..+|+++|||||+|.+.++|.+||+.++..|+|+.|+|..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~--~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 35799999999999999999999999999876 3455667889999999999999999999988999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
.++.
T Consensus 89 ~~~~ 92 (175)
T 1fje_B 89 KGRD 92 (175)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 310
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.12 E-value=1.6e-10 Score=117.97 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=70.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeec--eEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g--~~l~V~ 1108 (1169)
..++|||+|||..+++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|+.. ++..|+| ++|+|.
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNI-LRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 3589999999999999999999999999999875 55666889999999999999999999985 8999987 899998
Q ss_pred ec
Q 001060 1109 ER 1110 (1169)
Q Consensus 1109 ~~ 1110 (1169)
++
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 311
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.12 E-value=1.2e-10 Score=133.39 Aligned_cols=154 Identities=9% Similarity=0.001 Sum_probs=137.3
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---------------hHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---------------PEIHLFAA 432 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---------------~~l~~~~a 432 (1169)
..+++++++..|++++...|.....|..++.++...|++++|+..|++|+.+. |++ ..+|+.+|
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHH
Confidence 34567788888999999899999999999999999999999999999999988 666 58999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
.++.+.|++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++++.+.|. .+.++..++.++..
T Consensus 204 ~~~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKA-LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN------NKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH
Confidence 9999999999999999998 8899999999999999999999999999999999999864 36688888888776
Q ss_pred HhCCHHHH-HHHHHHHhhh
Q 001060 513 VSRNAEKA-RQILVDSLDH 530 (1169)
Q Consensus 513 ~~g~~e~A-r~i~~kAl~~ 530 (1169)
.|++++| +.+|++.+..
T Consensus 277 -~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 277 -IRRQLAREKKLYANMFER 294 (336)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 8888888 6778777654
No 312
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.12 E-value=6.9e-10 Score=123.75 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=67.1
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1108 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V~ 1108 (1169)
.++++|||+|||.++++++|+++|++||.|++|.|. .++ +|||||+|.+.++|.+||.. ++..|+ |+.|+|+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~-~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe-cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 357899999999999999999999999999998653 222 58999999999999999986 899999 9999999
Q ss_pred ecc
Q 001060 1109 ERR 1111 (1169)
Q Consensus 1109 ~~r 1111 (1169)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 976
No 313
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.12 E-value=1.6e-09 Score=108.96 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|...+..+...|++++|+..|++++...|.+..+|..++.++...|++++|+..|++++.+. |++..+|+.+|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 46788888888899999999999999999999999999999999999999999999999999987 88999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 436 EQNGDIDGARAAYQLVHTETSPGLLEAI--IKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~~~~~~--~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
...|++++|+.+|+++ ++++|.+..+| +..+..+.+.|++++|+.+++++.....
T Consensus 92 ~~~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 92 MALGKFRAALRDYETV-VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 9999999999999998 78899998888 4455557788999999999998877653
No 314
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.11 E-value=1.8e-10 Score=131.98 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=127.9
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---------------PEYWIRYVLCMEASGSMDLAHNALAR 415 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---------------~e~W~~~a~~l~~~g~~e~A~~vl~r 415 (1169)
+++.....|..++..+.+.|++++|+..|+++|..+|.+ ..+|+.++.++...|++++|+..|++
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456677889999999999999999999999999999998 69999999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhh
Q 001060 416 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA-FSLYEQAIAIE 490 (1169)
Q Consensus 416 Al~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A-~~iy~~Al~~~ 490 (1169)
++++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..+|..++.++.++|+++++ +.+|++++...
T Consensus 222 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 222 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKV-LQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988 899999999999999999999999999998 889999999999999999999999888 66778777653
No 315
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.11 E-value=1.5e-10 Score=119.03 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=69.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeee---ceEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQV 1105 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g--~~~g~afV~F~~~~~a~~Ai~~-~~~~i~---g~~l 1105 (1169)
+.++|||+|||.++|+++|+++|++||.|.++.+ ++++.+| +++|||||+|.+.++|.+|++. ++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINV-LRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4589999999999999999999999999999875 5566665 8999999999999999999976 777665 5678
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
.|....+..
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 887766543
No 316
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.11 E-value=1.2e-10 Score=129.74 Aligned_cols=197 Identities=11% Similarity=0.040 Sum_probs=147.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 434 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~ 434 (1169)
....|...+..+...|++++|+..|++++...|.+..+|..++.++...|++++|+..|++++++. |++..+|+.+|.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456788888888999999999999999999999999999999999999999999999999999987 8899999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001060 435 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 514 (1169)
Q Consensus 435 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~ 514 (1169)
+...|++++|+..|+++ ++++|++...+...+....+. .+............+ ..+.+...+..++ .
T Consensus 82 ~~~~g~~~~A~~~~~~a-l~l~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~i~~~l~~l~---~ 148 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRA-YSLAKEQRLNFGDDIPSALRI---AKKKRWNSIEERRIH------QESELHSYLTRLI---A 148 (281)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHHHHTTCCCCSHHHHHHHH---HHHHHHHHHHHTCCC------CCCHHHHHHHHHH---H
T ss_pred HHHcCCHHHHHHHHHHH-HHhCccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHh------hhHHHHHHHHHHH---H
Confidence 99999999999999998 677776522111111111111 111222222222221 2244655666552 6
Q ss_pred CCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001060 515 RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 567 (1169)
Q Consensus 515 g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~ 567 (1169)
|++++|++.|+++++..|++..+...+..+.... .+..+.++.+|+++...
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKH--DKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH--HHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH--HHHHHHHHHHHHhhhcc
Confidence 7899999999999999999988777776655443 12356788899888664
No 317
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.10 E-value=1.1e-10 Score=135.23 Aligned_cols=281 Identities=7% Similarity=0.026 Sum_probs=97.8
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
++.+++.++++ ++.+.|..|+..+.+ .+++++|+.+|.++ .++..|...+..+...|++++|+..|+.
T Consensus 19 ld~A~~fae~~-----~~~~vWs~La~A~l~--~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 19 LDRAYEFAERC-----NEPAVWSQLAKAQLQ--KGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhC-----CChHHHHHHHHHHHH--cCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55566666555 233699999999888 46999999999874 3556788999999999999999999999
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001060 161 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 240 (1169)
Q Consensus 161 aL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~ 240 (1169)
+++..+ ++.+...++..+. ..|+.+++.++|+. . ....|...+......|+++.|+..|.++ .+
T Consensus 87 ark~~~-~~~i~~~Li~~Y~-Klg~l~e~e~f~~~------p---n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n 150 (449)
T 1b89_A 87 ARKKAR-ESYVETELIFALA-KTNRLAELEEFING------P---NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN 150 (449)
T ss_dssp ------------------------CHHHHTTTTTC------C-------------------CTTTHHHHHHHT-----TC
T ss_pred HHHhCc-cchhHHHHHHHHH-HhCCHHHHHHHHcC------C---cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hh
Confidence 998643 3556655555555 57888888777752 1 2236777777777789999999999876 11
Q ss_pred HHHHHHHHHHHHhcCCCccccCHHHHHHHHHHHhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHH
Q 001060 241 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 320 (1169)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~eea~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~k~i~~~ 320 (1169)
...+
T Consensus 151 ~~~L---------------------------------------------------------------------------- 154 (449)
T 1b89_A 151 FGRL---------------------------------------------------------------------------- 154 (449)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 400 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l 400 (1169)
...+...+++++|+..|+++. +...|...+......|+++.|...... .-.+++--..++.++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA~-------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~----L~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKAN-------------STRTWKEVCFACVDGKEFRLAQMCGLH----IVVHADELEELINYY 217 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHHT-------------CHHHHHHHHHHHHHTTCHHHHHHTTTT----TTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHcC-------------CchhHHHHHHHHHHcCcHHHHHHHHHH----HHhCHhhHHHHHHHH
Confidence 123344455555666665552 245666666666666666666443332 123444444555666
Q ss_pred HHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhcCC-----ChHHHHHHHHHHHHHc
Q 001060 401 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN--GDIDGARAAYQLVHTETSP-----GLLEAIIKHANMERRL 473 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~--g~~~~A~~~~~~a~~~~~P-----~~~~~~~~~a~~e~r~ 473 (1169)
++.|.+++|+.+|+.++.+. +....+|..++.++.+. +++.++.++|... +.+.| .+..+|..++.++...
T Consensus 218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~-ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666666666666666554 55566666666555443 3444455555443 33333 3444566666666666
Q ss_pred CCHHHHHHHHH
Q 001060 474 GNLEDAFSLYE 484 (1169)
Q Consensus 474 g~~e~A~~iy~ 484 (1169)
++++.|...+.
T Consensus 296 ~e~d~A~~tm~ 306 (449)
T 1b89_A 296 EEYDNAIITMM 306 (449)
T ss_dssp TCHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 66666655443
No 318
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.09 E-value=4e-09 Score=119.49 Aligned_cols=231 Identities=9% Similarity=0.008 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhccCCHHHH
Q 001060 315 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACANYPEYW 393 (1169)
Q Consensus 315 k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~g-d~~~a~~lyeraL~~~~~~~e~W 393 (1169)
..+..+..+....+..++++..++++|. ++|....+|......+...+ ++++++.+++++|..+|.+..+|
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~--------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW 126 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVR--------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW 126 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH--------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence 3444445555556666789999999999 89999999999999888888 59999999999999999999999
Q ss_pred HHHHHHHHHc-C-ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHH--------HHHHHHHHHhhhcCCChHHHH
Q 001060 394 IRYVLCMEAS-G-SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID--------GARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 394 ~~~a~~l~~~-g-~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~--------~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
.....++... + +.++++.++.++++++ |++..+|.....++...+.++ ++++.++++ ++++|.+..+|
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~-I~~dp~N~SAW 204 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM-LRVDGRNNSAW 204 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HHHCTTCHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH-HHhCCCCHHHH
Confidence 9999999887 7 8899999999999988 899999999998888877777 899999998 78899999999
Q ss_pred HHHHHHHHHcCC-------HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH-------------------
Q 001060 464 IKHANMERRLGN-------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA------------------- 517 (1169)
Q Consensus 464 ~~~a~~e~r~g~-------~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~------------------- 517 (1169)
..++.+..+.+. ++++..+++++|...|.+ ..+|..+..++.. .|.-
T Consensus 205 ~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n------~SaW~Ylr~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 205 GWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN------VSAWNYLRGFLKH-FSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCCSGGGHHHHGGGTC------
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCCCccccccccccccccccccc
Confidence 999999988886 789999999999998754 5578765555444 4432
Q ss_pred -HHHHHHHHHHhhhc------CCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001060 518 -EKARQILVDSLDHV------QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 565 (1169)
Q Consensus 518 -e~Ar~i~~kAl~~~------p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral 565 (1169)
..........+... +.+...+..++.+....++ .+.+..+|+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~---~~~a~~~~~~l~ 329 (349)
T 3q7a_A 278 IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR---VDDAAKVFEKLS 329 (349)
T ss_dssp --------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 22222222222222 3566777777666665555 355677777754
No 319
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.09 E-value=1.6e-09 Score=110.98 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=112.6
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHH-HHHcCCH--HHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF-KEQNGDI--DGA 444 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~-~e~~g~~--~~A 444 (1169)
..|++++|+..|++++...|.+.++|+.++.++...|++++|+.+|++++++. |+++.+|+.++.+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 45788899999999999999999999999999999999999999999999988 8899999999999 7789998 999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 445 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 445 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
+.+|+++ ++++|++..+|+.++.++...|++++|+.+|++++...|..
T Consensus 101 ~~~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKA-LALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHH-HHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 9999998 78899999999999999999999999999999999998753
No 320
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.09 E-value=4.3e-09 Score=111.90 Aligned_cols=177 Identities=11% Similarity=-0.022 Sum_probs=148.1
Q ss_pred HHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----ChH
Q 001060 332 SKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG----SMD 407 (1169)
Q Consensus 332 ~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g----~~e 407 (1169)
+++..|+++++ ..+...+..++.++...+++++|+.+|++++.. .+++.++.++.++.. + +++
T Consensus 4 eA~~~~~~aa~----------~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAE----------AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHH----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHH----------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHH
Confidence 35556777765 245788999999998999999999999999865 689999999999887 6 899
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCC--ChHHHHHHHHHHHHH----cCCHH
Q 001060 408 LAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARAAYQLVHTETSP--GLLEAIIKHANMERR----LGNLE 477 (1169)
Q Consensus 408 ~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~~~~~a~~~~~P--~~~~~~~~~a~~e~r----~g~~e 477 (1169)
+|+..|+++++ +.++..++.++.++.. .+++++|+..|+++ .+..+ ++..+++.++.++.. .++++
T Consensus 71 ~A~~~~~~A~~---~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A-~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 71 QARQLAEKAVE---AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDA-ARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH-TSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH-HHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999975 5789999999999987 88999999999998 66676 358999999999998 88999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHhhhcC
Q 001060 478 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR-----NAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 478 ~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g-----~~e~Ar~i~~kAl~~~p 532 (1169)
+|+..|+++++.. +. +..+..++.++..-.| ++++|+..|++|++.-.
T Consensus 147 ~A~~~~~~A~~~~-~~------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 147 KASEYFKGSSSLS-RT------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHTS-CT------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC-CC------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999882 11 3456677777655334 89999999999998743
No 321
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.09 E-value=2e-10 Score=116.92 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=69.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceE--EEEEe
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ--VYIEE 1109 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~--l~V~~ 1109 (1169)
.++|||+|||..+++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+. |+|.+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRI-LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEE-EecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 478999999999999999999999999999875 55667889999999999999999999986 899999975 77776
Q ss_pred c
Q 001060 1110 R 1110 (1169)
Q Consensus 1110 ~ 1110 (1169)
+
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 322
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.09 E-value=2.4e-10 Score=127.52 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=70.7
Q ss_pred CCceEEEEecCCCCCCHHHHH----HHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEE
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1105 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~----~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l 1105 (1169)
.+.++|||+|||.++|+++|+ ++|++||.|.+|.| + .+|+++|||||+|.+.++|.+||+. ++..|.|+.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~-~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILV-S---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEE-c---CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 356899999999999999977 89999999999754 2 2678999999999999999999965 8999999999
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|++++.+.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999887644
No 323
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.08 E-value=4.6e-09 Score=118.49 Aligned_cols=200 Identities=13% Similarity=0.058 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LL 460 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~ 460 (1169)
++.+.+.++...|++++|...|.+++.+.... ...++..++.++...|++++|+..|+++ +++.+. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A-l~l~~~~g~~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA-SVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHH-HHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHHHHcCCHHHHH
Confidence 34444667778899999999999999987321 2457888899999999999999999998 444321 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH-----
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK----- 535 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~----- 535 (1169)
.++..++.++.+ |++++|+.+|++|+.+.+..........++..++.++.. .|++++|+..|+++++..+.+.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 678899999988 999999999999999886532222234678888999877 9999999999999999876542
Q ss_pred -HHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001060 536 -PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 603 (1169)
Q Consensus 536 -~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~i~~v 603 (1169)
..+...+......++ .+.+..+|++++ ..+.... . ....++...+... ..||.+....+
T Consensus 195 ~~~~~~~g~~~~~~g~---~~~A~~~~~~al-~~p~~~~--~--~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRAD---YVAAQKCVRESY-SIPGFSG--S--EDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHT-TSTTSTT--S--HHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHh-CCCCCCC--C--HHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 244555555555566 567899999999 7665432 1 1122344444433 35776665553
No 324
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.08 E-value=1.4e-10 Score=123.76 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=67.4
Q ss_pred CCCceEEEEecCCCCC---------CHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001060 1030 EGEVKSVYVRNLPSTV---------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1099 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~---------t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~ 1099 (1169)
+.+.++|||+||+..+ ++++|+++|++||.|.+|.|. .++|||||+|.+.++|+.|++. ++..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-------~~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-------ESKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-------GGGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-------CCCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3467999999999998 799999999999999998753 2479999999999999999987 8888
Q ss_pred e------------eceEEEEEeccCCCC
Q 001060 1100 L------------AGRQVYIEERRPNTG 1115 (1169)
Q Consensus 1100 i------------~g~~l~V~~~r~~~~ 1115 (1169)
| .|+.|.|.+++..+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 8 899999999987644
No 325
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=8.3e-10 Score=101.62 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=62.1
Q ss_pred ceEEEEecCC-------CCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEE
Q 001060 1033 VKSVYVRNLP-------STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQV 1105 (1169)
Q Consensus 1033 ~~~i~V~nlp-------~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l 1105 (1169)
.++|.|.-.. .++++++|+++|++||.|.+|.|. ++++|||||+|++.++|.+||+. ...+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~------~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS------SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE------SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc------cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeE
Confidence 3566666543 468999999999999999997653 36789999999999999999997 455789999
Q ss_pred EEEeccCCC
Q 001060 1106 YIEERRPNT 1114 (1169)
Q Consensus 1106 ~V~~~r~~~ 1114 (1169)
+|++++++.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999988764
No 326
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.07 E-value=1e-09 Score=105.30 Aligned_cols=105 Identities=11% Similarity=0.191 Sum_probs=89.2
Q ss_pred hCCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHhccCCC--------HHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001060 130 EFPLCYGYWKKYADHEARVGSM------DKVVEVYERAVQGVTYS--------VDIWLHYCIFAINTYGDPETIRRLFER 195 (1169)
Q Consensus 130 ~~P~~~~~W~~~a~~e~~~~~~------e~A~~l~eraL~~~P~s--------~~lw~~y~~~~~~~~~~~e~Ar~~~er 195 (1169)
..|++++.|..|++++.+.|+. ++.+++|+|++...|.+ +-||+.|+.|. ..+|+++||++|+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~--ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK--AIQEPDDARDYFQM 85 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH--HHHCGGGCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH--HhcCHHHHHHHHHH
Confidence 4688888888888888888887 88888888888888764 68999999884 45899999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001060 196 GLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 239 (1169)
Q Consensus 196 Al~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~ 239 (1169)
+++. ...| ..+|..|++||.++|+.++|++|+.+++...+.
T Consensus 86 a~~~-hKkF--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 86 ARAN-CKKF--AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHH-CTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHH-hHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 9995 4444 899999999999999999999999999998443
No 327
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.06 E-value=2.7e-09 Score=102.63 Aligned_cols=114 Identities=10% Similarity=-0.062 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
.+.|...+..+...|++++|+..|++++..+|.++.+|..++.++...|++++|+..|++++++. |++..+|+.+|.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777777777777777777777777777766 66777777777777
Q ss_pred HHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHHHHHH
Q 001060 436 EQNGDIDGARAAYQLVHTETS------PGLLEAIIKHANMER 471 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a~~e~ 471 (1169)
...|++++|+..|+++ ++++ |.+..++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~a-l~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAA-RTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHH-HHhCcccCCchhHHHHHHHHHHHHH
Confidence 7777777777777776 5666 666666665555443
No 328
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.06 E-value=2.5e-09 Score=109.53 Aligned_cols=122 Identities=10% Similarity=0.034 Sum_probs=112.3
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhCCH--HHHH
Q 001060 79 PAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVGSM--DKVV 155 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~-e~~~~~~--e~A~ 155 (1169)
+.++.+++.|+++++.+|.+.++|..++..+... +++++|+.+|++++..+|.+..+|..++.+ +...|++ ++|+
T Consensus 24 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ--NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4467889999999999999999999999999885 599999999999999999999999999999 8899998 9999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 156 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
.+|++++...|.+..+|+.++.++. ..|++++|+..|++++...+.+
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAF-MQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH-HcccHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999999988 7899999999999999976654
No 329
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1e-09 Score=104.05 Aligned_cols=78 Identities=22% Similarity=0.243 Sum_probs=65.9
Q ss_pred CceEEEEecCCCCCC-----------HHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001060 1032 EVKSVYVRNLPSTVT-----------AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1099 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t-----------~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~ 1099 (1169)
+.++|+|+||....+ +++|+++|++||.|.+|. +.++ .++|||||+|.+.++|.+||.. +|..
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~--i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLL--LFDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEE--EETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEE--EecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 568999999943332 589999999999999974 3443 3789999999999999999976 8999
Q ss_pred eeceEEEEEeccCCC
Q 001060 1100 LAGRQVYIEERRPNT 1114 (1169)
Q Consensus 1100 i~g~~l~V~~~r~~~ 1114 (1169)
|+||.|+|+++.++.
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999988754
No 330
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.06 E-value=2e-09 Score=103.59 Aligned_cols=124 Identities=14% Similarity=0.017 Sum_probs=112.1
Q ss_pred CCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHH
Q 001060 350 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 429 (1169)
Q Consensus 350 pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~ 429 (1169)
+..+.....|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|+.+|++++++. |++..+|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999987 78899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001060 430 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 475 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 475 (1169)
.++.++...|++++|+..|+++ ++++|.+..+|..++.++.++|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKA-LDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-HHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999998 78899999999998888877654
No 331
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.05 E-value=3.2e-10 Score=116.43 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=67.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---ceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~---g~~l~V 1107 (1169)
..++|||+|||.++|+++|+++|++||.|.++.+ +++ .+|+++|||||+|.+.++|.+|++. +|..+. |+.|+|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI-LRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE-EEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 4579999999999999999999999999999875 444 4688999999999999999999976 887666 489999
Q ss_pred Eec
Q 001060 1108 EER 1110 (1169)
Q Consensus 1108 ~~~ 1110 (1169)
.++
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 875
No 332
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.05 E-value=2.8e-09 Score=101.80 Aligned_cols=124 Identities=14% Similarity=0.014 Sum_probs=113.4
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 430 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~ 430 (1169)
.++.....|..++..+...|++++|+..|++++...|.+..+|..++.++...|++++|+.+|++++... |++..+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 85 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGR 85 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHH
Confidence 4566678889999988999999999999999999999999999999999999999999999999999987 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001060 431 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 476 (1169)
Q Consensus 431 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 476 (1169)
++.++...|++++|+..|+++ +++.|++..+|..++.++.++|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKA-LELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-HhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998 788999999999999998888764
No 333
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.02 E-value=3.9e-10 Score=126.40 Aligned_cols=81 Identities=23% Similarity=0.427 Sum_probs=70.9
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCC-CcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRK-DVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~-~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
..++|||+|||.. +|+++|+++|++||.|..|.| +++.. ||+++|||||+|.+.++|.+|+..+|..|+|+.|+|.+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~ 287 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINI-PAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSL 287 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEEC-CSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEE-EecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEE
Confidence 4589999999999 999999999999999999765 33443 58999999999999999999994489999999999999
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
++++
T Consensus 288 a~~k 291 (292)
T 2ghp_A 288 ADKK 291 (292)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9875
No 334
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.01 E-value=1.7e-10 Score=121.22 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=65.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeE----EeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV----FVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i----~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
..++|||+|||+++|+++|+++|++||.|..+.+ .+.+...++++|||||+|.+.++|.+||..++..|+|+.|+|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEE
Confidence 3589999999999999999999999954432100 112222356789999999999999999966999999999999
Q ss_pred EeccCCC
Q 001060 1108 EERRPNT 1114 (1169)
Q Consensus 1108 ~~~r~~~ 1114 (1169)
...+...
T Consensus 83 ~~~~~~~ 89 (198)
T 2yh0_A 83 RRPHDYQ 89 (198)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9877653
No 335
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.9e-09 Score=101.54 Aligned_cols=119 Identities=12% Similarity=-0.038 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001060 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN 468 (1169)
Q Consensus 389 ~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 468 (1169)
..+.|...+..+...|++++|+..|++++++. |+++.+|+.+|.++...|++++|+..|+++ ++++|++..+|+.++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA-IEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCcHHHHHHHHH
Confidence 46789999999999999999999999999988 889999999999999999999999999998 8899999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001060 469 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 509 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~ 509 (1169)
++..+|++++|+..|++++.+.|.....+..+.++..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 99999999999999999999984322223345555555544
No 336
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.01 E-value=5.5e-09 Score=110.12 Aligned_cols=136 Identities=10% Similarity=-0.010 Sum_probs=112.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
++..+..+...|++++|+..|++++ +.++.+|+.++.++...|++++|+..|+++ ++++|++..+|+.++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRS-INRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCccchHHHHHHHHHHHH
Confidence 5566777777888888888888875 236778888888888888888888888887 67788888888888988888
Q ss_pred cCCHHHHHHHHHHHHHhhhCCC----------ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 473 LGNLEDAFSLYEQAIAIEKGKE----------HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 473 ~g~~e~A~~iy~~Al~~~~~~~----------~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
.|++++|+..|++++...+.+. ..+..+.+|..++.++.. .|++++|+..|+++++..|++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999988776543 234456788899998887 999999999999999999976
No 337
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.01 E-value=8.1e-10 Score=119.15 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=68.4
Q ss_pred CceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
++++|||+|||. ++++++|+++|++||.|.+|.| ++++ +|||||+|.+.++|.+||+. ++..|+|+.|+|.+
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i-~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEE-CCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-EECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 568999999999 9999999999999999999765 3332 68999999999999999974 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++...
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 88653
No 338
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.01 E-value=8.2e-09 Score=103.60 Aligned_cols=132 Identities=11% Similarity=-0.077 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 469 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 469 (1169)
...|+..+..+...|++++|...|++++... |++..+|+.++.++...|++++|+..|+++ ++++|.+..+|+.++.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRA-IELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcccHHHHHHHHHH
Confidence 5689999999999999999999999999987 889999999999999999999999999998 78899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH--HHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 470 ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 470 e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~--~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
+...|++++|+.+|++++...|.+ +.++ ...+..+.. .|++++|..+++++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHD------KDAKMKYQECNKIVK-QKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHH-HHHHHHHHHcccchHHH
Confidence 999999999999999999998642 4455 334433444 78899999998877653
No 339
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=2.1e-08 Score=112.10 Aligned_cols=175 Identities=11% Similarity=0.049 Sum_probs=140.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYVLCMEASGSMDLAHNALARATHVFVKR----- 423 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e------~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~----- 423 (1169)
....|...+..+...|++++|+..|++++...+.... .++.++.++...|++++|+..|++++.+....
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 3455666677778899999999999999988776543 34556677777889999999999999765221
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccC
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHT--ETSPGL----LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 497 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~--~~~P~~----~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~ 497 (1169)
...++..+|.++...|++++|...|++++. +..++. ..+++.++.++..+|++++|..+|++++.+........
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 145888899999999999999999999831 335552 26899999999999999999999999999875433334
Q ss_pred chHHHHHHHHHHHHHHhCCHHHH-HHHHHHHhhh
Q 001060 498 TLPMLYAQYSRFLHLVSRNAEKA-RQILVDSLDH 530 (1169)
Q Consensus 498 ~~~~l~~~~a~~~~~~~g~~e~A-r~i~~kAl~~ 530 (1169)
....+|..++.++.. .|++++| ...|++|+.+
T Consensus 234 ~~~~~~~~lg~~y~~-~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 234 LIGQLYYQRGECLRK-LEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHH
Confidence 456788889988777 9999999 8889999864
No 340
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.00 E-value=8.7e-10 Score=121.42 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=67.7
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1031 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1031 ~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
.+.++|||+|||+++|+++|+++|++||.|..|.+ . +++|||||+|.+.++|.+|+.. ++..|+|+.|+|.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-N------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-E------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-e------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 35689999999999999999999999999999764 2 3479999999999999999985 99999999999998
Q ss_pred ccCC
Q 001060 1110 RRPN 1113 (1169)
Q Consensus 1110 ~r~~ 1113 (1169)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 7653
No 341
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.00 E-value=3.5e-09 Score=107.19 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=94.5
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 431 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~ 431 (1169)
++.+...|..++..+...|++++|+..|++++..+|.+..+|+.++.++...|++++|+..|++++++. |++..+|+.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455677788888888888888888888888888888888888888888888888888888888888877 7788888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN 468 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 468 (1169)
+.++...|++++|+..|+++ ++++|++...|+..+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG-IEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHHSSSCCHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH-HHhCCCchHHHHHHHH
Confidence 88888888888888888887 6778887776655543
No 342
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.99 E-value=6.4e-10 Score=116.99 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=67.4
Q ss_pred ceEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEec
Q 001060 1033 VKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1110 (1169)
Q Consensus 1033 ~~~i~V~nlp~-~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~ 1110 (1169)
+++|||+|||. ++++++|+++|++||.|.+|.+ ++++ +|||||+|.+.++|.+|+.. ++..|+|+.|+|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i-~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEEC-STTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-EeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 48999999999 9999999999999999999764 3222 68999999999999999984 999999999999998
Q ss_pred cCCC
Q 001060 1111 RPNT 1114 (1169)
Q Consensus 1111 r~~~ 1114 (1169)
+...
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
No 343
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.99 E-value=1.2e-09 Score=121.95 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=74.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.++|||+|||.++|+++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|+.. ++..|+|+.|.|.++.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFL-VYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEE-EeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 379999999999999999999999999999875 56777899999999999999999999955 9999999999999987
Q ss_pred CCC
Q 001060 1112 PNT 1114 (1169)
Q Consensus 1112 ~~~ 1114 (1169)
++.
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 653
No 344
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.98 E-value=1e-08 Score=95.99 Aligned_cols=113 Identities=10% Similarity=0.009 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|..++..+...|++++++..|++++...|.+..+|..++.++...|++++|...|++++... |++..+|+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 46688888888888999999999999999999999999999998888899999999999999877 77888999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 436 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
...|++++|+..|+++ +++.|++..+|..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG-LKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHH-HTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH-HHcCCCCHHHHHHHHHhh
Confidence 9999999999999987 788888888888877665
No 345
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.97 E-value=1.9e-08 Score=112.45 Aligned_cols=174 Identities=11% Similarity=0.086 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHH-----HHH-HHHHHHHcCChHHHHHHHHHHHHHhhccC-----h
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY-----WIR-YVLCMEASGSMDLAHNALARATHVFVKRL-----P 425 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~-----W~~-~a~~l~~~g~~e~A~~vl~rAl~~~~p~~-----~ 425 (1169)
..+...+......|++++|+.+|++++...+..++. |+. ++.++...+++++|+..|++++.+..... .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 334444666678899999999999999988777662 443 66666677899999999999998653322 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhh------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCch
Q 001060 426 EIHLFAARFKEQNGDIDGARAAYQLVHT------ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL 499 (1169)
Q Consensus 426 ~l~~~~a~~~e~~g~~~~A~~~~~~a~~------~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~ 499 (1169)
.++..+|.++...|++++|...|++++. ...+....++..++.++.++|++++|+.+|++++.+.+........
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 3788899999999999999999999842 2223345679999999999999999999999999988655444555
Q ss_pred HHHHHHHHHHHHHHhC-CHHHHHHHHHHHhhhc
Q 001060 500 PMLYAQYSRFLHLVSR-NAEKARQILVDSLDHV 531 (1169)
Q Consensus 500 ~~l~~~~a~~~~~~~g-~~e~Ar~i~~kAl~~~ 531 (1169)
..+|..++..+.. .| ++++|...|++|+.+.
T Consensus 236 ~~~~~~lg~~~~~-~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 236 GQLYYQRGECLRK-LEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHH
Confidence 7789999998887 88 5799999999999753
No 346
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.97 E-value=1.2e-09 Score=121.85 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred CceEEEEecCCCCC-CHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEe
Q 001060 1032 EVKSVYVRNLPSTV-TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~-t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~ 1109 (1169)
..++|||+|||..+ |+++|+++|++||.|.++.| +++ .+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQL-ACG-QDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEE-EEC-SSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEE-EEC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 45899999999995 99999999999999999875 333 3789999999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001060 1110 RRPNT 1114 (1169)
Q Consensus 1110 ~r~~~ 1114 (1169)
++++.
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 98764
No 347
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.97 E-value=1.1e-09 Score=112.24 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=64.6
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcC----C-------CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCee
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNF----G-------RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQL 1100 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~----G-------~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i 1100 (1169)
+.++|||+|||.++|+++|+++|++| | .|.++. .++++|||||+|.+.++|.+|+..++..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~-------~~~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-------INQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE-------EETTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE-------ecCCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 45899999999999999999999999 5 454432 24568999999999999999996699999
Q ss_pred eceEEEEEeccCC
Q 001060 1101 AGRQVYIEERRPN 1113 (1169)
Q Consensus 1101 ~g~~l~V~~~r~~ 1113 (1169)
+|+.|+|...+..
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 348
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.95 E-value=1.7e-09 Score=113.23 Aligned_cols=132 Identities=9% Similarity=0.014 Sum_probs=112.9
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 353 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP----------------EYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~----------------e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
+.....|...+..+...|++++|+.+|++++..+|.++ .+|..++.++...|++++|+..|+++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44567788888888899999999999999999998887 89999999999999999999999999
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF-SLYEQA 486 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~-~iy~~A 486 (1169)
+++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..++..++.+...+++.+++. ..|.+.
T Consensus 115 l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 115 LKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA-ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH-HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 889999999999999999999999999998 7889999999999999888887766655 344443
No 349
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.95 E-value=2e-08 Score=94.84 Aligned_cols=117 Identities=23% Similarity=0.279 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|..++..+...|++++|+.+|++++...|.+..+|..++.++...|++++|+.+|++++... |.+..+|+.++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 56788888888888899999999999998888888889888888888888999999998888876 77888888888888
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC
Q 001060 436 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG 474 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g 474 (1169)
...|++++|+..|+++ +++.|++..++..++.++.+.|
T Consensus 88 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA-LELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888998888887 6778888888888777765543
No 350
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.95 E-value=1.5e-09 Score=101.21 Aligned_cols=79 Identities=23% Similarity=0.345 Sum_probs=65.1
Q ss_pred CceEEEEecC--CCCCC--------HHHHHHHHhcCCCeeeeeEEeecCCC--cccccEEEEEECCHHHHHHHHHh-CCC
Q 001060 1032 EVKSVYVRNL--PSTVT--------AFEIEEEFQNFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPI 1098 (1169)
Q Consensus 1032 ~~~~i~V~nl--p~~~t--------~~~L~~~F~~~G~i~~~~i~~~~~~~--g~~~g~afV~F~~~~~a~~Ai~~-~~~ 1098 (1169)
+.+.|.+.|+ |.+.. +++|++.|++||.|.+|.| .+++.+ ++++|||||+|.+.++|.+|+.. ||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i-~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI-PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEEC-CCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEE-eccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4588999998 43443 3689999999999999865 344433 36899999999999999999977 999
Q ss_pred eeeceEEEEEecc
Q 001060 1099 QLAGRQVYIEERR 1111 (1169)
Q Consensus 1099 ~i~g~~l~V~~~r 1111 (1169)
.++||.|+|++..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999998764
No 351
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.94 E-value=1.2e-08 Score=107.49 Aligned_cols=129 Identities=13% Similarity=0.012 Sum_probs=117.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHc
Q 001060 359 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 438 (1169)
Q Consensus 359 W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~ 438 (1169)
+...+..+...|++++|+..|++++ ..++.+|+.++.++...|++++|+..|++++.+. |++..+|+.+|.++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 5556667778999999999999996 3478999999999999999999999999999987 88999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 439 GDIDGARAAYQLVHTETSPGLL----------------EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 439 g~~~~A~~~~~~a~~~~~P~~~----------------~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
|++++|+..|+++ +++.|++. .+|+.++.++..+|++++|+..|++++...|.
T Consensus 85 ~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEA-LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHH-HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHH-HHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 9999999999998 67666654 99999999999999999999999999999864
No 352
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=8e-09 Score=114.97 Aligned_cols=167 Identities=9% Similarity=-0.054 Sum_probs=130.8
Q ss_pred cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001060 387 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 466 (1169)
Q Consensus 387 ~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 466 (1169)
|...+.|...+..+...|++++|+..|++++... |+++.+|+.+|.++...|++++|+..|+++ ++++|++..+|+.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA-LELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCCHHHHHHH
Confidence 4567899999999999999999999999999987 889999999999999999999999999998 88999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHh
Q 001060 467 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 546 (1169)
Q Consensus 467 a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~ 546 (1169)
+.++..+|++++|+..|++++.+.|++..... ..++..+ + ..++...........+.+..+...+..|..
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~ 148 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSAL-----R----IAKKKRWNSIEERRIHQESELHSYLTRLIA 148 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-SHHHHHH-----H----HHHHHHHHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-HHHHHHH-----H----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999875421111 1233222 1 223334444444567777777766666542
Q ss_pred hCCChhHHHHHHHHHHHHhhcCCC
Q 001060 547 IQSSPKQIDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 547 ~~~~~~~~~~~r~l~eral~~~~~ 570 (1169)
.+.+.+...|++++...++
T Consensus 149 -----~~~~~A~~~~~~al~~~p~ 167 (281)
T 2c2l_A 149 -----AERERELEECQRNHEGHED 167 (281)
T ss_dssp -----HHHHHHHTTTSGGGTTTSC
T ss_pred -----HHHHHHHHHHHhhhccccc
Confidence 2245566777888776554
No 353
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.93 E-value=4.7e-10 Score=104.52 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=60.0
Q ss_pred EecCCCCCCHHHHHHHH------------hcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceE
Q 001060 1038 VRNLPSTVTAFEIEEEF------------QNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1104 (1169)
Q Consensus 1038 V~nlp~~~t~~~L~~~F------------~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~ 1104 (1169)
+.||+..+++++|+++| ++||.|.+|.| +++ .+|+++|||||+|.+.++|.+|+.. +|..++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i-~~~-~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-CDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEE-EeC-CCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56777888888777776 99999999865 333 4578999999999999999999986 999999999
Q ss_pred EEEEec
Q 001060 1105 VYIEER 1110 (1169)
Q Consensus 1105 l~V~~~ 1110 (1169)
|+|++.
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999874
No 354
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.91 E-value=2.1e-09 Score=120.42 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=67.7
Q ss_pred CCCceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEEEe
Q 001060 1030 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1109 (1169)
Q Consensus 1030 ~~~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V~~ 1109 (1169)
+.+.++|||+|||.++|+++|+++|++||.|..|.| +++.. + ++|||||+|.+.++|.+||+.++..|+|+.|.|..
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~-~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDV-ADSLK-K-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEE-EECTT-S-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECCC-C-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 345799999999999999999999999999999875 34442 2 57999999999999999998799999999999987
Q ss_pred ccC
Q 001060 1110 RRP 1112 (1169)
Q Consensus 1110 ~r~ 1112 (1169)
...
T Consensus 115 ~~~ 117 (292)
T 2ghp_A 115 LTE 117 (292)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 355
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.91 E-value=5.2e-09 Score=114.80 Aligned_cols=192 Identities=10% Similarity=-0.007 Sum_probs=157.7
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHHhhc------------------
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRY-------VLCMEASGSMDLAHNALARATHVFVK------------------ 422 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~-------a~~l~~~g~~e~A~~vl~rAl~~~~p------------------ 422 (1169)
..+|...|+..|.+++..+|...+.|+.+ +..|...+...++...+.+++.+.+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 47899999999999999999999999999 78888888888888899999885421
Q ss_pred --cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCch-
Q 001060 423 --RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL- 499 (1169)
Q Consensus 423 --~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~- 499 (1169)
....+++.|+.++...|++++|+++|..+ ....|+.. .++.++.+..+.+++++|+..|+.++.... +.+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~-~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d-----~~~~ 170 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAA-PVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD-----KFLA 170 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSS-CCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC-----HHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC-----cccH
Confidence 11468888999999999999999999997 67789888 999999999999999999999997765431 111
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc--CC-CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001060 500 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHV--QL-SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 570 (1169)
Q Consensus 500 ~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~--p~-s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~ 570 (1169)
..+++.++..+.. .|++++|+..|++++... |. ....+...+.....+|. .+.++.+|++++...|+
T Consensus 171 ~~a~~~LG~al~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr---~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAAN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN---ESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc
Confidence 2467788888776 999999999999998654 55 44566666666666666 56789999999998775
No 356
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.91 E-value=2.2e-09 Score=118.25 Aligned_cols=80 Identities=23% Similarity=0.276 Sum_probs=69.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeee---ceEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLA---GRQVYI 1107 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~--~~~~i~---g~~l~V 1107 (1169)
+++|||+|||..+|+++|+++|++||.|..|.|. .+ .+|+++|||||+|.+.++|.+||.. ++..+. |+.|.|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVV-VD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-EE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEee-eC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 5789999999999999999999999999998764 44 5889999999999999999999987 355554 899999
Q ss_pred EeccCCC
Q 001060 1108 EERRPNT 1114 (1169)
Q Consensus 1108 ~~~r~~~ 1114 (1169)
+.+.+..
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9887643
No 357
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.91 E-value=3.2e-08 Score=121.14 Aligned_cols=171 Identities=7% Similarity=-0.047 Sum_probs=150.4
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC-
Q 001060 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGS----------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNG- 439 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~----------~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g- 439 (1169)
-.++|+.+|+++|..+|.+..+|...+.++...++ +++++..++++++.+ |++..+|...+.++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34588999999999999999999999999998887 899999999999988 899999999999999999
Q ss_pred -CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH----
Q 001060 440 -DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---- 513 (1169)
Q Consensus 440 -~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~---- 513 (1169)
+++++++.++++ ++++|.+..+|..++.+..+.| .++++.+.++++|+.++.+ ...|.+.+.++...
T Consensus 123 ~~~~~el~~~~k~-l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n------~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 123 PNWARELELCARF-LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC------HHHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHH-HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC------ccHHHHHHHHHHhhcccc
Confidence 779999999998 8899999999999999999999 8999999999999998643 56887777766652
Q ss_pred ---------hCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHhhCC
Q 001060 514 ---------SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 549 (1169)
Q Consensus 514 ---------~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~~~~ 549 (1169)
.+.+++|.+.+.+|+..+|++...|..+..+....+
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 155899999999999999999999966555554443
No 358
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.91 E-value=8.1e-09 Score=99.15 Aligned_cols=102 Identities=16% Similarity=0.035 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 436 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e 436 (1169)
..|...+..+.+.|++++|+..|++++...|.+.++|+.++.++...|++++|+..|++++++. |+++.+|+.++.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4577888888888999999999999999999999999999999888999999999999999877 788888888998888
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChH
Q 001060 437 QNGDIDGARAAYQLVHTETSPGLL 460 (1169)
Q Consensus 437 ~~g~~~~A~~~~~~a~~~~~P~~~ 460 (1169)
..|++++|+..|+++ ++++|++.
T Consensus 97 ~~g~~~~A~~~~~~a-l~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAW-LLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHH-HC------
T ss_pred HcCCHHHHHHHHHHH-HHhCcCCC
Confidence 888899999988887 67787654
No 359
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.90 E-value=1.1e-08 Score=99.39 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|..++..+...|++++|+..|++++..+|.+..+|+.++.++...|++++|+..|++++++. |++..+|+.++.++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 44444454444455555555555555555555555555555555555555555555555555444 44444444444444
Q ss_pred HHcCCHHHHHHHHHHH
Q 001060 436 EQNGDIDGARAAYQLV 451 (1169)
Q Consensus 436 e~~g~~~~A~~~~~~a 451 (1169)
...|++++|+..|+++
T Consensus 88 ~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 88 LEMESYDEAIANLQRA 103 (137)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4444444444444444
No 360
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.90 E-value=1.6e-09 Score=114.48 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=59.9
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCe--eeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeece
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRI--KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR 1103 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i--~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~ 1103 (1169)
++++|||+|||+++|+++|+++|++||.| +++++ +.++ |+.+|||||+|.+.++|.+||.. |+..|+|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~-~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV-FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE-CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 45899999999999999999999999999 77654 3332 45679999999999999999986 89999987
No 361
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.90 E-value=2.9e-08 Score=100.35 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=100.0
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 173 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 173 (1169)
.++.+.+.|..++..+... +++++|+.+|++++..+|.+..+|..++.++.+.|++++|+..|+++|...|.+...|+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMAR--KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3566788999999998884 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001060 174 HYCIFAINTYGDPETIRRLFERGLAYVGTD 203 (1169)
Q Consensus 174 ~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d 203 (1169)
.++..+. ..|++++|+..|++++...+.+
T Consensus 84 ~lg~~~~-~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 84 RLGLARF-DMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHH-HccCHHHHHHHHHHHHHhCCCc
Confidence 9999998 8999999999999999977664
No 362
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.89 E-value=3e-08 Score=103.26 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=126.8
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-----ccChHHHHHHHHHHHHcCCHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-----KRLPEIHLFAARFKEQNGDID 442 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~-----p~~~~l~~~~a~~~e~~g~~~ 442 (1169)
..|++++|+.+++.+.........+|..++.++...|++++|+..|++++.+.. +....++..++.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 468888988855555443336778999999999999999999999999998652 335678888999999999999
Q ss_pred HHHHHHHHHhhhc---CC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001060 443 GARAAYQLVHTET---SP----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 515 (1169)
Q Consensus 443 ~A~~~~~~a~~~~---~P----~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g 515 (1169)
+|+..|+++ +++ .+ ....++..++.++..+|++++|+.+|++++..............++..++.++.. .|
T Consensus 84 ~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g 161 (203)
T 3gw4_A 84 AARRCFLEE-RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ-EK 161 (203)
T ss_dssp HHHHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHH-HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-Cc
Confidence 999999997 444 33 2355688999999999999999999999998765332222223456777888776 99
Q ss_pred CHHHHHHHHHHHhhhc
Q 001060 516 NAEKARQILVDSLDHV 531 (1169)
Q Consensus 516 ~~e~Ar~i~~kAl~~~ 531 (1169)
++++|+..|+++++..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999764
No 363
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.89 E-value=3.3e-09 Score=111.03 Aligned_cols=144 Identities=14% Similarity=-0.011 Sum_probs=115.3
Q ss_pred cCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh----------------HHHHHHH
Q 001060 369 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP----------------EIHLFAA 432 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~----------------~l~~~~a 432 (1169)
.|+++++...|+......+.....|...+..+...|++++|+.+|++++.+. |.++ .+|+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3444555555555554555566789999999999999999999999999987 6666 8999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
.++...|++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++++.+.|.+ +.++..++.++..
T Consensus 96 ~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKV-LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHH
Confidence 9999999999999999998 78899999999999999999999999999999999998642 5677777777655
Q ss_pred HhCCHHHHH
Q 001060 513 VSRNAEKAR 521 (1169)
Q Consensus 513 ~~g~~e~Ar 521 (1169)
.++.+++.
T Consensus 169 -~~~~~~~~ 176 (198)
T 2fbn_A 169 -LKEARKKD 176 (198)
T ss_dssp -HHHHHC--
T ss_pred -HHHHHHHH
Confidence 55555444
No 364
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.89 E-value=2.8e-08 Score=96.58 Aligned_cols=122 Identities=9% Similarity=-0.007 Sum_probs=105.4
Q ss_pred HhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001060 93 KANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172 (1169)
Q Consensus 93 ~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 172 (1169)
..+|.+...|..++..+... +++++|..+|++++..+|.+..+|..++.++...|++++|+..|++++...|.+...|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHH
Confidence 46788999999999999884 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHH
Q 001060 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDY--LSFPLWDKYIEYE 217 (1169)
Q Consensus 173 ~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~--~s~~lw~~y~~~e 217 (1169)
+.++..+. ..|++++|+..|++++...+.+. ....++..+....
T Consensus 81 ~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 81 FFLGQCQL-EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 99999998 89999999999999998765422 1345555555533
No 365
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.89 E-value=1.4e-08 Score=97.61 Aligned_cols=120 Identities=9% Similarity=-0.011 Sum_probs=104.5
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 173 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 173 (1169)
..|.+..+|..++..+... +++++|..+|++++..+|.+..+|..++.++...+++++|+++|++++...|.+..+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQK--GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHT--TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 3567889999999998874 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 001060 174 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM 219 (1169)
Q Consensus 174 ~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~ 219 (1169)
.++..+. ..+++++|+..|++++...+. ...+|..+...+..
T Consensus 89 ~la~~~~-~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 89 RKAAALE-AMKDYTKAMDVYQKALDLDSS---CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHCGG---GTHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHH
Confidence 9999888 889999999999999986443 34556555554443
No 366
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.89 E-value=1.9e-08 Score=95.91 Aligned_cols=122 Identities=11% Similarity=-0.015 Sum_probs=108.7
Q ss_pred ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001060 386 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 465 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 465 (1169)
.+.....|+.++..+...|++++|...|++++... |++..+|+.++.++...|++++|+.+|+++ +++.|++..+|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERA-ICIDPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHH-HhcCccCHHHHHH
Confidence 34567899999999999999999999999999987 788999999999999999999999999998 7889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 516 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 516 (1169)
++.++.+.|++++|+.+|++++...|. .+.++..++.++.. .|+
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~-~~~ 129 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPD------NETYKSNLKIAELK-LRE 129 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHH-Hhc
Confidence 999999999999999999999999763 25677777777665 554
No 367
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2e-08 Score=98.57 Aligned_cols=120 Identities=14% Similarity=0.033 Sum_probs=108.1
Q ss_pred CChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHH
Q 001060 351 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 351 l~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
.++.....|...+..+...|++++|+.+|++++..+|.+ ..+|+.++.++...|++++|+..|++++.+. |++..+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346678899999999999999999999999999999987 8899999999999999999999999999987 788999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
|+.++.++...|++++|+.+|+++ ++++|++..+|..+..+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRC-VSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999998 78899999888887776543
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.88 E-value=4.9e-09 Score=99.72 Aligned_cols=79 Identities=29% Similarity=0.364 Sum_probs=65.8
Q ss_pred CceEEEEecCC--CCC---CHHHHHHHHhcCCCeeeeeEEeecCC----CcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001060 1032 EVKSVYVRNLP--STV---TAFEIEEEFQNFGRIKPDGVFVRNRK----DVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1101 (1169)
Q Consensus 1032 ~~~~i~V~nlp--~~~---t~~~L~~~F~~~G~i~~~~i~~~~~~----~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~ 1101 (1169)
+++.|+++|+- .++ -+++|++.|++||.|.+|.|.. ++. +++++||+||+|.+.++|.+|+.. ||..|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~-~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ-EKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEE-EEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEee-cCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 45899999983 222 3689999999999999987643 332 467889999999999999999987 999999
Q ss_pred ceEEEEEecc
Q 001060 1102 GRQVYIEERR 1111 (1169)
Q Consensus 1102 g~~l~V~~~r 1111 (1169)
||.|+|++..
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999998764
No 369
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.88 E-value=2.6e-09 Score=127.72 Aligned_cols=133 Identities=9% Similarity=0.068 Sum_probs=102.0
Q ss_pred ChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 352 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---------------PEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 352 ~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~---------------~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
.+.....|+.++..+.+.|++++|+..|+++|..+|.+ ..+|+.++.++.+.|++++|+..|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45566778888888888899999999999999888887 578888888888888888888888888
Q ss_pred HHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 001060 417 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS-LYEQA 486 (1169)
Q Consensus 417 l~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~-iy~~A 486 (1169)
+++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..+|..++.++.++++++++.. +|.++
T Consensus 344 l~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 344 LGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKV-LEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 777888888888888888888888888887 67788888888888888777777665543 34433
No 370
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.87 E-value=1.8e-09 Score=113.47 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=67.3
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC-CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V~ 1108 (1169)
++++|||+|||..+++++|+++|++|| .|..+.+ +.+ .+|||||+|.+.++|.+|+.. ++..|+ |+.|+|.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i-~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF-FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE-SST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE-EeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 458999999999999999999999999 9999764 222 368999999999999999986 899999 9999999
Q ss_pred eccCC
Q 001060 1109 ERRPN 1113 (1169)
Q Consensus 1109 ~~r~~ 1113 (1169)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98763
No 371
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.87 E-value=3.6e-09 Score=114.03 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=67.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCC-CeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-ceEEEEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1108 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~-g~~l~V~ 1108 (1169)
+.++|||+|||.++++++|+++|++|| .|..+.+ +.+ .+|||||+|.+.++|.+||.. ++..|+ |+.|+|.
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i-~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF-FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE-CSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE-EEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 458999999999999999999999999 9999764 221 368999999999999999985 999999 9999999
Q ss_pred eccCC
Q 001060 1109 ERRPN 1113 (1169)
Q Consensus 1109 ~~r~~ 1113 (1169)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98864
No 372
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.86 E-value=4.2e-08 Score=120.03 Aligned_cols=165 Identities=10% Similarity=0.000 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 001060 330 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD----------FNKVVKLYERCLIACANYPEYWIRYVLC 399 (1169)
Q Consensus 330 ~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd----------~~~a~~lyeraL~~~~~~~e~W~~~a~~ 399 (1169)
.++|+..++++|. ++|....+|..-...+...++ +++++..|+++|..+|.+..+|...+.+
T Consensus 45 ~eeal~~~~~~l~--------~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 45 DESVLELTSQILG--------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp SHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4677999999999 899999999999888877777 8999999999999999999999999999
Q ss_pred HHHcC--ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc---
Q 001060 400 MEASG--SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG-DIDGARAAYQLVHTETSPGLLEAIIKHANMERRL--- 473 (1169)
Q Consensus 400 l~~~g--~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g-~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~--- 473 (1169)
+...+ ++++++..++++++++ |++..+|...+.+....| .++++++.+.++ ++.+|.+..+|..++.+..++
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~-I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL-ITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT-TTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHH-HHHCCCCccHHHHHHHHHHhhccc
Confidence 99999 6799999999999988 899999999999999999 899999999998 889999999999999998875
Q ss_pred -----------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001060 474 -----------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 510 (1169)
Q Consensus 474 -----------g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~ 510 (1169)
+.++++.+++.+||...|.+ ..+|..+..++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~------~saW~y~~~ll 236 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLL 236 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC------SHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCC------ccHHHHHHHHH
Confidence 55799999999999998754 45776654443
No 373
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.86 E-value=5.2e-08 Score=103.38 Aligned_cols=181 Identities=11% Similarity=-0.052 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC----CHHHHHHHHH
Q 001060 374 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG----DIDGARAAYQ 449 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g----~~~~A~~~~~ 449 (1169)
+|+.+|+++... .+++.++.++.++...+++++|+..|+++++ ..++..++.++.++.. + ++++|+..|+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA---QGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 467789998865 7899999999999999999999999999987 4688999999999887 6 8999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHH
Q 001060 450 LVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQ 522 (1169)
Q Consensus 450 ~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~e~Ar~ 522 (1169)
++ . .+++..+++.++.++.. .+++++|+.+|+++++..+. ...+..+..++.++..- .+++++|+.
T Consensus 78 ~A-~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 78 KA-V--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES----DAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HH-H--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS----HHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HH-H--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC----cchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 98 3 56789999999999987 78999999999999987631 02356777888776541 568999999
Q ss_pred HHHHHhhhcCCCHHHHHHHHHhHh-hCC--ChhHHHHHHHHHHHHhhcC
Q 001060 523 ILVDSLDHVQLSKPLLEALIHFES-IQS--SPKQIDFLEQLVDKFLMSN 568 (1169)
Q Consensus 523 i~~kAl~~~p~s~~l~~~~a~~E~-~~~--~~~~~~~~r~l~eral~~~ 568 (1169)
.|++|++. +.+...+..+..+.. ..+ ...+.+.+..+|++++...
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999998 444434444444333 223 2334677888999988764
No 374
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.86 E-value=1.1e-08 Score=94.94 Aligned_cols=106 Identities=9% Similarity=0.036 Sum_probs=99.1
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC--CHHH
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY--SVDI 171 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~--s~~l 171 (1169)
++|.+.+.|..++..+... +++++|..+|++++..+|.+..+|..++.++...|++++|+++|++++...|. +..+
T Consensus 1 l~p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDA--GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSS--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence 4788999999999998874 69999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhc-CCHHHHHHHHHHHHHhcCC
Q 001060 172 WLHYCIFAINTY-GDPETIRRLFERGLAYVGT 202 (1169)
Q Consensus 172 w~~y~~~~~~~~-~~~e~Ar~~~erAl~~~g~ 202 (1169)
|..++..+. .. ++.++|++.|++++...+.
T Consensus 79 ~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 79 WAAKADALR-YIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHT-TCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHhhcccC
Confidence 999999988 89 9999999999999986654
No 375
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.85 E-value=1.3e-08 Score=97.67 Aligned_cols=100 Identities=13% Similarity=-0.066 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
..|+..+..+...|++++|+..|++++++. |+++.+|+.+|.++...|++++|+..|+++ ++++|++..+|+.++.++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHA-RMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH
Confidence 358888999999999999999999999988 899999999999999999999999999998 889999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhC
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
.+.|++++|+..|++++...|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999998863
No 376
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.84 E-value=3.6e-09 Score=126.47 Aligned_cols=152 Identities=9% Similarity=-0.007 Sum_probs=128.7
Q ss_pred HcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---------------hHHHHHHH
Q 001060 368 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---------------PEIHLFAA 432 (1169)
Q Consensus 368 ~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---------------~~l~~~~a 432 (1169)
..+++++++..|++++...+.+...|...+..+.+.|++++|+..|++|+++. |.+ ..+|+.++
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHH
Confidence 44566788888899998889999999999999999999999999999999988 666 68999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001060 433 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 512 (1169)
Q Consensus 433 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~ 512 (1169)
.++.+.|++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++|+++.|.+ ..++..++.++..
T Consensus 325 ~~~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKA-LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN------KAARLQISMCQKK 397 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 9999999999999999998 88999999999999999999999999999999999998643 4577777777665
Q ss_pred HhCCHHHHH-HHHHHHh
Q 001060 513 VSRNAEKAR-QILVDSL 528 (1169)
Q Consensus 513 ~~g~~e~Ar-~i~~kAl 528 (1169)
.+++++|. .+|++.+
T Consensus 398 -~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 398 -AKEHNERDRRIYANMF 413 (457)
T ss_dssp -HHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 66666554 4444444
No 377
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=1.4e-07 Score=104.71 Aligned_cols=190 Identities=9% Similarity=0.027 Sum_probs=146.0
Q ss_pred HHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHcCChHHHH
Q 001060 333 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA--NYPEYWIRYVLCMEASGSMDLAH 410 (1169)
Q Consensus 333 ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~--~~~e~W~~~a~~l~~~g~~e~A~ 410 (1169)
++..|++.+.. .+.....+..++..+...|++++|+.++.++|...+ .+.+++...+.++.+.|+.+.|+
T Consensus 85 a~~~l~~l~~~--------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKD--------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp CCHHHHHTTTT--------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 67778888762 223344556677788889999999999999998886 89999999999999999999999
Q ss_pred HHHHHHHHHhhc------cChHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhcCCC--hHHHHHHHHHHHHHcCCHHHHH
Q 001060 411 NALARATHVFVK------RLPEIHLFAARFKEQNG--DIDGARAAYQLVHTETSPG--LLEAIIKHANMERRLGNLEDAF 480 (1169)
Q Consensus 411 ~vl~rAl~~~~p------~~~~l~~~~a~~~e~~g--~~~~A~~~~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~ 480 (1169)
+.+++..+.. | +...+.+.-+.+....| ++.+|..+|+++ .+..|+ ...+++. ++.++|++++|.
T Consensus 157 k~l~~~~~~~-~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El-~~~~p~~~~~~lLln---~~~~~g~~~eAe 231 (310)
T 3mv2_B 157 TIFDNYTNAI-EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL-SQTFPTWKTQLGLLN---LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH-HTTSCSHHHHHHHHH---HHHHHTCHHHHH
T ss_pred HHHHHHHhcC-ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHhCCCcccHHHHHH---HHHHcCCHHHHH
Confidence 9999988776 4 33334444343344444 999999999997 677787 2333333 788999999999
Q ss_pred HHHHHHHHhhhCC--C--ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 481 SLYEQAIAIEKGK--E--HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 481 ~iy~~Al~~~~~~--~--~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
.+++.+++..|.- . ..+..+.++.+.+.+.+. .|+ +|.+++.++.+..|+++.+.
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~-lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM-QGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH-TTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH-hCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999888765320 0 013457888888777776 786 89999999999999998766
No 378
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=7.4e-08 Score=89.97 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001060 427 IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 506 (1169)
Q Consensus 427 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~ 506 (1169)
.|+..+..+...|++++|..+|+++ +...|.+..+|..++.++.+.|++++|..+|++++...|. .+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~ 78 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEA-IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHH-HHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------cHHHHHHH
Confidence 4444444444555555555555554 3445555555555555555555555555555555554432 13344455
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHH
Q 001060 507 SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 543 (1169)
Q Consensus 507 a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~ 543 (1169)
+.++.. .|++++|+..|+++++..|++..++..+..
T Consensus 79 a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 79 AAALEF-LNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 544443 555555555555555555555554444433
No 379
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.82 E-value=9.4e-08 Score=90.17 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=99.4
Q ss_pred hCCCC-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001060 94 ANSSD-FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172 (1169)
Q Consensus 94 ~nP~d-~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 172 (1169)
.+|.+ ...|..++..+... +++++|..+|++++..+|.+...|..++.++.+.|++++|+.+|++++...|.+..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp ----CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH
Confidence 35655 78999999988874 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001060 173 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 215 (1169)
Q Consensus 173 ~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~ 215 (1169)
..++..+. ..+++++|+..|++++...+. ...++..+..
T Consensus 81 ~~la~~~~-~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~ 119 (125)
T 1na0_A 81 YNLGNAYY-KQGDYDEAIEYYQKALELDPN---NAEAKQNLGN 119 (125)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHH
Confidence 99999888 789999999999999996544 4444444443
No 380
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.82 E-value=4e-08 Score=97.91 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHHhhc
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-------YPE-----YWIRYVLCMEASGSMDLAHNALARATHVFVK 422 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~-------~~e-----~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p 422 (1169)
....|...+..+.+.|++++|+..|+++|..+|. +.. +|...+.++...|++++|+..|++|+++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 3556666666666667777777777777777666 222 5555555555555555555555555442
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 423 RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI----IKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 423 ~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~----~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
|+++ .+++|++..+| ++++..+..+|++++|+..|++|+++.|++
T Consensus 87 -------------------------~n~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 87 -------------------------FNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp -------------------------HHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred -------------------------hhcc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 2333 35599999999 999999999999999999999999999864
No 381
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.81 E-value=5.8e-08 Score=93.96 Aligned_cols=118 Identities=11% Similarity=0.106 Sum_probs=95.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc-CchHHH
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS-QTLPML 502 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~-~~~~~l 502 (1169)
....|..+|..+.+.|++++|+..|+++ ++++|++..+|..++.++.++|++++|+..|+++|++.|..... .....+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~A-l~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKA-IELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4456677888999999999999999998 78999999999999999999999999999999999988753211 112346
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHh
Q 001060 503 YAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 544 (1169)
Q Consensus 503 ~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~ 544 (1169)
|..++.++.. .|++++|++.|+++|+..|+ ..+...+..+
T Consensus 86 ~~~lg~~~~~-~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 86 MSRAGNAFQK-QNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 7778888776 99999999999999998875 4444444433
No 382
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.2e-07 Score=92.98 Aligned_cols=117 Identities=19% Similarity=0.045 Sum_probs=79.9
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001060 422 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 498 (1169)
Q Consensus 422 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~ 498 (1169)
+.....|+..+..+...|++++|..+|+++ +++.|++ ..+|+.++.++...|++++|+.+|++++...+.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 97 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQA-LGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------ 97 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------
Confidence 345566666666666677777777777776 5666665 666777777777777777777777777776542
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHHHhHh
Q 001060 499 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 546 (1169)
Q Consensus 499 ~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a~~E~ 546 (1169)
.+.+|..++.++.. .|++++|+.+|+++++..|++..++..+..+..
T Consensus 98 ~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 98 DVKALYRRSQALEK-LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 25566666766665 777777777777777777777777766665544
No 383
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.80 E-value=6.1e-08 Score=92.49 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=94.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC-------hHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL-------PEI 427 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~-------~~l 427 (1169)
....|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|..+|++++.+. |+. ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHH
Confidence 356788888888889999999999999999999999999999999988999999999999999887 555 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 472 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 472 (1169)
|+.++.++...|++++|+..|+++ +++.| +..++..+..+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKS-LAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH-HHhCC-CHHHHHHHHHHHHH
Confidence 888888888888888888888887 56677 46666666555443
No 384
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.79 E-value=3.7e-08 Score=99.35 Aligned_cols=112 Identities=11% Similarity=0.097 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIA------------------CANYPEYWIRYVLCMEASGSMDLAHNALARAT 417 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~------------------~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl 417 (1169)
...|...+..+.+.|++++|+..|+++|.. .|.+..+|..++.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 466888888888899999999999999988 55666777777777777777777777777777
Q ss_pred HHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH-HHHHHHHHH
Q 001060 418 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-EAIIKHANM 469 (1169)
Q Consensus 418 ~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-~~~~~~a~~ 469 (1169)
++. |++..+|+.+|.++...|++++|+..|+++ ++++|++. .++..+..+
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a-l~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLL-LRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCGGGHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHH-HhcCCCCHHHHHHHHHHH
Confidence 765 677777777777777777777777777776 66677766 344443333
No 385
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.79 E-value=8.8e-08 Score=92.64 Aligned_cols=100 Identities=9% Similarity=-0.008 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh-------HHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-------EIH 428 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~-------~l~ 428 (1169)
...|+.++..+.+.|++++|+..|+++|..+|.+..+|..++.++...|++++|+..|++++++. |+.. .+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHHH
Confidence 35688888888889999999999999999999999999999999999999999999999999887 4432 355
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001060 429 LFAARFKEQNGDIDGARAAYQLVHTETSP 457 (1169)
Q Consensus 429 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P 457 (1169)
..+|.++...|++++|+..|+++ ++..|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~ka-l~~~~ 114 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRS-LSEFR 114 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HhhCc
Confidence 55566666666666666666665 34444
No 386
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.76 E-value=1.2e-07 Score=90.98 Aligned_cols=112 Identities=14% Similarity=0.065 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC---hHHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFA 431 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~---e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~---~~l~~~~ 431 (1169)
.+...+..+...|++++|+..|++++...|.++ ++|+.++.++...|++++|+..|++++... |++ +.+++.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 355666666778888888888888888888777 788888888888888888888888888876 666 6778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001060 432 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 471 (1169)
Q Consensus 432 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 471 (1169)
|.++...|++++|+..|+++ ++..|++..++.....+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQV-ATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH-HHHCCCChHHHHHHHHHHH
Confidence 88888888888888888887 6677877766655555443
No 387
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.76 E-value=3.8e-08 Score=91.15 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc--ChHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAAR 433 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~--~~~l~~~~a~ 433 (1169)
...|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|+.+|+++++.. |+ ...+|+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34444455544455555555555555555555555555555555555555555555555555443 44 4445555555
Q ss_pred HHHHc-CCHHHHHHHHHHH
Q 001060 434 FKEQN-GDIDGARAAYQLV 451 (1169)
Q Consensus 434 ~~e~~-g~~~~A~~~~~~a 451 (1169)
++... |++++|+..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 55555 5555555555544
No 388
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.75 E-value=6.1e-09 Score=119.27 Aligned_cols=157 Identities=10% Similarity=0.067 Sum_probs=76.8
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHH
Q 001060 354 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 433 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~ 433 (1169)
.....|+..+..+.+.|++++|+..|+++|..++.+.. +...++++++...+ ...+|+.++.
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence 34455666666666667777777777777776665431 11112222222111 1136777788
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001060 434 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 513 (1169)
Q Consensus 434 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~ 513 (1169)
++.+.|++++|+..|+++ ++++|++..+|++++.++..+|++++|+..|++++.+.|.+ +.++..++.+....
T Consensus 239 ~~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~------~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIV-LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD------KAIRRELRALAEQE 311 (338)
T ss_dssp HHHTTTCCHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHH
Confidence 888888888888888887 67788888888888888888888888888888888776532 44555666554444
Q ss_pred hCCHHHHHHHHHHHhhhcCCCH
Q 001060 514 SRNAEKARQILVDSLDHVQLSK 535 (1169)
Q Consensus 514 ~g~~e~Ar~i~~kAl~~~p~s~ 535 (1169)
.+..++++.+|++++...|.+.
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCC
Confidence 5667778888888887777654
No 389
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.75 E-value=3.6e-07 Score=101.52 Aligned_cols=199 Identities=14% Similarity=0.111 Sum_probs=150.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhh-ccChHHHHHHHH
Q 001060 355 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-KRLPEIHLFAAR 433 (1169)
Q Consensus 355 ~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~-p~~~~l~~~~a~ 433 (1169)
.......|+.|.. ++ ++..+++.+...+.....++.++.++...|++++|+.++.+++...+ ....+++...+.
T Consensus 70 ~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq 144 (310)
T 3mv2_B 70 LGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE 144 (310)
T ss_dssp THHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence 3445666777763 22 77888888876556677788999999999999999999999987552 267899999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001060 434 FKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHANMERRLG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 505 (1169)
Q Consensus 434 ~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a~~e~r~g--~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~ 505 (1169)
++.+.|+.+.|++++++. .+.+|+ ...+.+.-+.+....| ++.+|..+|+++++..|+ ...+.++..
T Consensus 145 i~L~~~r~d~A~k~l~~~-~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~----~~~~~lLln 219 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNY-TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT----WKTQLGLLN 219 (310)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS----HHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH-HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC----cccHHHHHH
Confidence 999999999999999997 677882 3333333343344445 899999999998877642 011223222
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhh----------cCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001060 506 YSRFLHLVSRNAEKARQILVDSLDH----------VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 572 (1169)
Q Consensus 506 ~a~~~~~~~g~~e~Ar~i~~kAl~~----------~p~s~~l~~~~a~~E~~~~~~~~~~~~r~l~eral~~~~~~~ 572 (1169)
... ..|++++|.++++.+++. .|+++..+.+.+.+...+|. .+.++++++....|+.+
T Consensus 220 ---~~~-~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 220 ---LHL-QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-----DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp ---HHH-HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-----TTHHHHHHHHHTTCCCH
T ss_pred ---HHH-HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhCCCCh
Confidence 333 499999999999988876 48899999888888887775 25678888888888877
No 390
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.75 E-value=3.7e-08 Score=99.31 Aligned_cols=102 Identities=12% Similarity=-0.026 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----------------hccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHVF-----------------VKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~-----------------~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
...|...|..+...|++++|+..|.+++.+. .|....+|+.+|.++.+.|++++|+..|+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a- 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV- 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-
Confidence 4678889999999999999999999999982 2567789999999999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 453 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 453 ~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
++++|++..+|+.++.++..+|++++|+..|++++.+.|.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 8899999999999999999999999999999999999864
No 391
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.75 E-value=1.6e-07 Score=92.92 Aligned_cols=140 Identities=11% Similarity=-0.080 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hH
Q 001060 392 YWIRYVLCMEASGSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LL 460 (1169)
Q Consensus 392 ~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~ 460 (1169)
+|..++.++...|++++|+..|++++.+..... ..++..++.++...|++++|+..|+++ +++.+. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT-LLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHhCCcHHHH
Confidence 444555555555555555555555555442111 124555555555566666666666554 222111 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCC
Q 001060 461 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 533 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~ 533 (1169)
.++..++.++...|++++|+.+|++++..............++..++.++.. .|++++|+..|+++++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA-LGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888887754322222334556777777666 88999999999998876543
No 392
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.74 E-value=1.3e-08 Score=116.48 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
.+|+.++.++...|++++|+..|++++++. |++..+|+.+|.++...|++++|+..|+++ ++++|++..++..++.+.
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a-l~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKA-QKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT-TC----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH
Confidence 589999999999999999999999999987 899999999999999999999999999998 889999999999988884
Q ss_pred -HHcCCHHHHHHHHHHHHHhhhC
Q 001060 471 -RRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 471 -~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
...+..++++.+|.+++...|.
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Confidence 4456778899999999988764
No 393
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.73 E-value=1.1e-08 Score=122.94 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 437 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~ 437 (1169)
.|..++..+.+.|++++|+..|++++...|.+..+|..++.++...|++++|+..|++|+++. |++..+|+.+|.++..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344455555678999999999999999999999999999999999999999999999999987 8999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhhhC
Q 001060 438 NGDIDGARAAYQLVHTETSPGLLEAIIKHANM--ERRLGNLEDAFSLYE-----------QAIAIEKG 492 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~--e~r~g~~e~A~~iy~-----------~Al~~~~~ 492 (1169)
.|++++|+..|+++ +++.|++..+|..++.+ +.++|++++|+.+|+ +++...+.
T Consensus 87 ~g~~~eA~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 87 LGKFRAALRDYETV-VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HTCHHHHHHHHHHH-HHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred cCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999998 78899999998888887 788899999999999 77776654
No 394
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=1.1e-06 Score=97.96 Aligned_cols=173 Identities=11% Similarity=-0.004 Sum_probs=125.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh--
Q 001060 388 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-- 459 (1169)
Q Consensus 388 ~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-- 459 (1169)
.....|...+..+...|++++|...+.++++.. +... ..++.++.++...|++++|...|+++ +++.+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~ 150 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKL-LNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH-HTTCCCSSC
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCc
Confidence 344566677777888999999999999999865 3332 34555777888899999999999998 4433322
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 460 ----LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 460 ----~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~-~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
..+|..++.++...|++++|..+|++|+........... ...++.+++.++.. .|++++|...|+++++..+..
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHhc
Confidence 568999999999999999999999999965432111111 12578888888777 999999999999999876321
Q ss_pred ------HHHHHHHHHhHhhCCChhHHHHH-HHHHHHHhh
Q 001060 535 ------KPLLEALIHFESIQSSPKQIDFL-EQLVDKFLM 566 (1169)
Q Consensus 535 ------~~l~~~~a~~E~~~~~~~~~~~~-r~l~eral~ 566 (1169)
..++...+......++. +.+ ..+|++++.
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~---~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYE---EAEIEDAYKKASF 265 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHH
Confidence 45555666666666653 223 555666544
No 395
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.72 E-value=2.4e-08 Score=112.39 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=60.8
Q ss_pred CCCceEEEEec--CCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---ce
Q 001060 1030 EGEVKSVYVRN--LPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GR 1103 (1169)
Q Consensus 1030 ~~~~~~i~V~n--lp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~---g~ 1103 (1169)
..+..+|||+| |++.+|+++|+++|++||.|++|. +. . +||||||+|++.++|++||+. ||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~--~~-~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL--MP-P----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEE--CC-T----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEE--Ee-C----CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 34668999999 578999999999999999999854 32 1 579999999999999999987 898884 44
Q ss_pred --EEEEEec
Q 001060 1104 --QVYIEER 1110 (1169)
Q Consensus 1104 --~l~V~~~ 1110 (1169)
.|.|.+.
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 4666655
No 396
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.71 E-value=6.3e-08 Score=96.52 Aligned_cols=74 Identities=8% Similarity=0.089 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-------ccCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHHhhccChH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIA-------CANYPEYW----IRYVLCMEASGSMDLAHNALARATHVFVKRLPE 426 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~-------~~~~~e~W----~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~ 426 (1169)
.|.+.+..+.+.|++++|+..|++||.. +|.+...| ++.+..|...|++++|+..|++|+++. |++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~-p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI-EERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHH
Confidence 8999999999999999999999999999 99999999 999999999999999999999999988 66665
Q ss_pred HHHHHH
Q 001060 427 IHLFAA 432 (1169)
Q Consensus 427 l~~~~a 432 (1169)
+.-.+.
T Consensus 138 ~~~~~~ 143 (159)
T 2hr2_A 138 ETPGKE 143 (159)
T ss_dssp CCTTHH
T ss_pred HHHHHH
Confidence 544443
No 397
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.69 E-value=1.5e-07 Score=97.85 Aligned_cols=157 Identities=12% Similarity=0.052 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------ccCCHHHHHHHHHHH
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA------CANYPEYWIRYVLCM 400 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~------~~~~~e~W~~~a~~l 400 (1169)
.+++++++..++.... ........|..++..+...|++++++..|++++.. .+....+|..++.++
T Consensus 5 ~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 5 AHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp --CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 4566666664433322 12245778888999999999999999999999994 344567899999999
Q ss_pred HHcCChHHHHHHHHHHHHHhh--c----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC---CC---hHHHHHHHHH
Q 001060 401 EASGSMDLAHNALARATHVFV--K----RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS---PG---LLEAIIKHAN 468 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~~--p----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~---P~---~~~~~~~~a~ 468 (1169)
...|++++|+..|++++.+.. + ....++..++.++...|++++|+..|+++ +++. .+ ...++..++.
T Consensus 77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS-LVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHhccchHHHHHHHHHHHH
Confidence 999999999999999999842 1 23456888899999999999999999997 3221 11 1234688899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 469 MERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 469 ~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
++...|++++|+.+|++++.+...
T Consensus 156 ~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 398
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=3.9e-07 Score=101.63 Aligned_cols=164 Identities=9% Similarity=0.028 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccCCCChh--cHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhccCC------HHH
Q 001060 322 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHN-YLDFIERDGDFNKVVKLYERCLIACANY------PEY 392 (1169)
Q Consensus 322 ~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~--~~~~W~~-yl~~~~~~gd~~~a~~lyeraL~~~~~~------~e~ 392 (1169)
..+...+++++++..|+++++. .+..+. ..-.|.. ++.++...+++++|+..|+++|...... ..+
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKK-----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 4566778999999999999872 122222 1233554 5566677789999999999999864332 337
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhh------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChH
Q 001060 393 WIRYVLCMEASGSMDLAHNALARATHVFV------KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLL 460 (1169)
Q Consensus 393 W~~~a~~l~~~g~~e~A~~vl~rAl~~~~------p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~ 460 (1169)
+..++.++...|++++|...|+++++... +....+++.+|.++.+.|++++|+..|+++ +++. ....
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a-l~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA-IEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHcCcHHHHH
Confidence 89999999999999999999999997542 223458889999999999999999999998 4443 2347
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhh
Q 001060 461 EAIIKHANMERRLGN-LEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 461 ~~~~~~a~~e~r~g~-~e~A~~iy~~Al~~~~ 491 (1169)
.+|+.++.++.++|+ +++|...|++|+.+..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 889999999999994 7999999999999764
No 399
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.66 E-value=3.4e-07 Score=87.70 Aligned_cols=110 Identities=14% Similarity=-0.036 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 504 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~---~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~ 504 (1169)
++..|..+...|++++|...|+++ ++..|++. .+|+.++.++.+.|++++|+..|++++...|.. ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSF-LELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---DKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-HHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---cccHHHHH
Confidence 334444445555555555555554 44445444 455555555555555555555555555554321 11234444
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHHHHHH
Q 001060 505 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALI 542 (1169)
Q Consensus 505 ~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~~~~a 542 (1169)
.++.+++. .|++++|+..|+++++..|++........
T Consensus 81 ~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 81 KLGLSQYG-EGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 55555444 55555555555555555555554444333
No 400
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.66 E-value=1.2e-07 Score=94.36 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=82.6
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhh--------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQ--------DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG-- 149 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~--------~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~-- 149 (1169)
.++.+++.+++++++||.|.++|..++..+..+++ +.+++|+..|+++|+++|++..+|..++..+..+|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 35678899999999999999999999998887641 13679999999999999999999999999999875
Q ss_pred ---------CHHHHHHHHHHHHhccCCCHHHHHH
Q 001060 150 ---------SMDKVVEVYERAVQGVTYSVDIWLH 174 (1169)
Q Consensus 150 ---------~~e~A~~l~eraL~~~P~s~~lw~~ 174 (1169)
++++|++.|+|+|.+.|.+...|..
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8999999999999999988655433
No 401
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.66 E-value=1.3e-07 Score=109.54 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLI----------------ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~----------------~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
..|..++..+.+.|++++|+..|+++|. ..+.+..+|..++.++.+.|++++|+..|++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4577778888889999999999999998 444555666666666666666666666666666655
Q ss_pred hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001060 421 VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 479 (1169)
Q Consensus 421 ~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 479 (1169)
|++..+|+.+|.++...|++++|+..|+++ ++++|++..++..++.++..+++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A-l~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKA-QEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666 556666666666666665555554444
No 402
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.64 E-value=2.6e-07 Score=88.05 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC-------HH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS-------VD 170 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s-------~~ 170 (1169)
..+.|..++..+... +++++|..+|++++..+|.+..+|..++.++...|++++|+.+|++++...|.+ ..
T Consensus 3 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKK--KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 457899999988874 699999999999999999999999999999999999999999999999998877 88
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001060 171 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEY 216 (1169)
Q Consensus 171 lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~ 216 (1169)
+|+.++..+. ..+++++|+..|++++...+ +..++..+...
T Consensus 81 ~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~----~~~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYF-KEEKYKDAIHFYNKSLAEHR----TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC----CHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHhCC----CHHHHHHHHHH
Confidence 9999999888 78999999999999999543 24455444443
No 403
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=9.2e-08 Score=84.32 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=60.6
Q ss_pred CceEEEEecCCC----CCCH----HHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeece
Q 001060 1032 EVKSVYVRNLPS----TVTA----FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGR 1103 (1169)
Q Consensus 1032 ~~~~i~V~nlp~----~~t~----~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~ 1103 (1169)
+..+|+|.-++. +.-+ .+|.+.|++||.|..+++ +. +.+||+|.+.++|.+||+++|..++||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~-~~--------d~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRF-VE--------DKMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEE-CS--------SSEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEE-ec--------CCEEEEECChHHHHHHHhcCCeEeCCe
Confidence 346788887762 2323 678999999999998765 32 238999999999999999999999999
Q ss_pred EEEEEeccCCCC
Q 001060 1104 QVYIEERRPNTG 1115 (1169)
Q Consensus 1104 ~l~V~~~r~~~~ 1115 (1169)
.|+|..+++...
T Consensus 77 ~LkV~lkt~dW~ 88 (91)
T 2dnr_A 77 TITIALKSPSGP 88 (91)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeCCCCcc
Confidence 999999998643
No 404
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.63 E-value=3.6e-08 Score=118.39 Aligned_cols=134 Identities=11% Similarity=-0.031 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
+.|..++..+...|++++|+..|++|+++. |++..+|..+|.++.+.|++++|+..|+++ ++++|++..+|+.++.++
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRA-IELDKKYIKGYYRRAASN 84 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH
Confidence 345566667778899999999999999987 889999999999999999999999999998 889999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH--HHHHhCCHHHHHHHHH-----------HHhhhcCC
Q 001060 471 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF--LHLVSRNAEKARQILV-----------DSLDHVQL 533 (1169)
Q Consensus 471 ~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~--~~~~~g~~e~Ar~i~~-----------kAl~~~p~ 533 (1169)
..+|++++|+..|+++++..|.. +.++..++.. +.. .|++++|.++++ ++++..|+
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHD------KDAKMKYQECNKIVK-QKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTC------TTHHHHHHHHHHHHH-HHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHH-HHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999999999998653 2355555544 454 788999999999 77766554
No 405
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.63 E-value=4.3e-08 Score=93.10 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=70.9
Q ss_pred cCChHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHH
Q 001060 369 DGDFNKVVKLYERCLIA---CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 445 (1169)
Q Consensus 369 ~gd~~~a~~lyeraL~~---~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 445 (1169)
.|++++|+..|+++|.. +|.+..+|+.++.++...|++++|+.+|++++++. |+++.+++.++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 46777788888888887 57777888888888888888888888888888877 777888888888888888888888
Q ss_pred HHHHHHhhhcCCChHHHH
Q 001060 446 AAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~ 463 (1169)
..|+++ ++..|++..+.
T Consensus 82 ~~~~~a-l~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKI-IAETSDDETIQ 98 (117)
T ss_dssp HHHHHH-HHHHCCCHHHH
T ss_pred HHHHHH-HHhCCCcHHHH
Confidence 888887 56677766543
No 406
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.62 E-value=1e-07 Score=90.47 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=82.9
Q ss_pred CCCchHHHHHHHHHHh---CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001060 79 PAMSGEEDRLWNIVKA---NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 155 (1169)
Q Consensus 79 ~~~~~~~~~l~~al~~---nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 155 (1169)
+.++.++..|+++|+. +|.+..+|..|+..+... |++++|+.+|++++..+|++..+|..++..+.+.|++++|+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL--GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4567889999999999 699999999999999885 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHH
Q 001060 156 EVYERAVQGVTYSVDIW 172 (1169)
Q Consensus 156 ~l~eraL~~~P~s~~lw 172 (1169)
..|+++|...|.+.+++
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999999888765
No 407
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.61 E-value=1.2e-07 Score=89.42 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=60.2
Q ss_pred CceEEEEecCCCCC----------CHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001060 1032 EVKSVYVRNLPSTV----------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1100 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~----------t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i 1100 (1169)
+.+.|.++|+=..- -+++|++.|++||.|.+|.| . +.+ ++|||||+|.+.++|.+|+.. ||..|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i-~--~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV-D--KNS--AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE-C--TTC--TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE-e--cCC--CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34788899983211 13588999999999999754 2 222 589999999999999999976 99999
Q ss_pred eceEEEEEecc
Q 001060 1101 AGRQVYIEERR 1111 (1169)
Q Consensus 1101 ~g~~l~V~~~r 1111 (1169)
+||.|+|++..
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999864
No 408
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.58 E-value=4.6e-07 Score=104.92 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH---------------hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 001060 390 PEYWIRYVLCMEASGSMDLAHNALARATHV---------------FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE 454 (1169)
Q Consensus 390 ~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~---------------~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~ 454 (1169)
...|..++..+.+.|++++|+..|++|+++ ..+....+|+.+|.++.+.|++++|+..|+++ ++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a-l~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA-LE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH-HH
Confidence 356889999999999999999999999983 22567889999999999999999999999998 78
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHH
Q 001060 455 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ 522 (1169)
Q Consensus 455 ~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~ 522 (1169)
++|++..+|+.++.++.++|++++|+..|++|+++.|.+ +.++..++.++.. .++.+++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~-~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQK-IKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999998642 5677777777665 665665543
No 409
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.56 E-value=5.7e-07 Score=88.83 Aligned_cols=135 Identities=14% Similarity=0.032 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----C
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYP------EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----L 424 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~------e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~ 424 (1169)
...|..++..+...|++++++..|++++...+... .+|..++.++...|++++|...|++++.+.... .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45677888888899999999999999998876432 488899999999999999999999999877321 2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~ 491 (1169)
..++..++.++...|++++|+..|+++ +++. +....++..++.++...|++++|+.+|++++.+..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999997 3331 22345688899999999999999999999998763
No 410
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.54 E-value=7.2e-07 Score=84.00 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=75.9
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 81 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 160 (1169)
Q Consensus 81 ~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 160 (1169)
|..+++.|+++++.+|.+..+|..|+..+... |++++|+.+|++++..+|.+...|..++.++...|++++|+..|++
T Consensus 1 ~~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEH--EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35678889999999999999999999998874 5999999999999999999999999999999999999999999999
Q ss_pred HHhccCC
Q 001060 161 AVQGVTY 167 (1169)
Q Consensus 161 aL~~~P~ 167 (1169)
++...|.
T Consensus 79 al~~~~~ 85 (115)
T 2kat_A 79 GLAAAQS 85 (115)
T ss_dssp HHHHHHH
T ss_pred HHHhccc
Confidence 9988763
No 411
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.54 E-value=1.9e-07 Score=92.84 Aligned_cols=92 Identities=12% Similarity=0.016 Sum_probs=75.6
Q ss_pred HHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001060 367 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM----------DLAHNALARATHVFVKRLPEIHLFAARFKE 436 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~----------e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e 436 (1169)
.+.+.+++|+..|++++..+|.+++.|+.++.++...+++ ++|+..|++|+++. |+...+|+.++..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999887654 58888888888877 788888888888887
Q ss_pred HcC-----------CHHHHHHHHHHHhhhcCCChH
Q 001060 437 QNG-----------DIDGARAAYQLVHTETSPGLL 460 (1169)
Q Consensus 437 ~~g-----------~~~~A~~~~~~a~~~~~P~~~ 460 (1169)
..| ++++|..+|+++ ++++|++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kA-l~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQA-VDEQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHH-HHHCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHH-HHhCCCCH
Confidence 664 788888888887 67788753
No 412
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.4e-06 Score=102.31 Aligned_cols=208 Identities=9% Similarity=0.031 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCC------CC---hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHH--
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKP------LS---VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE-- 391 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~p------l~---~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e-- 391 (1169)
.+.+.+++++|+..|..+++..--.... .. .........++..+...|++++++.+|.+++...+....
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3456789999999999998731100000 00 111234677888889999999999999999988665433
Q ss_pred ----HHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-----CC
Q 001060 392 ----YWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTET-----SP 457 (1169)
Q Consensus 392 ----~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~-----~P 457 (1169)
+...++.++...|+++.|..++++++.+.... ...++..+|.++...|++++|..++++++... .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 33344455555789999999999999876322 25688899999999999999999999874321 34
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc
Q 001060 458 GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 531 (1169)
Q Consensus 458 ~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~-~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~ 531 (1169)
....+++..+.++...|++++|+.+|++++...+...+.+. ...++...+.+.. ..+++++|...|.++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC-EDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999987654322211 2234555555544 4899999999999999853
No 413
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=2.3e-07 Score=87.47 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=62.7
Q ss_pred CCCCceEEEEecCCCC-CCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECC-HHHHHHHHHh---CCCeeece
Q 001060 1029 DEGEVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFED-ISGVQNAIQA---SPIQLAGR 1103 (1169)
Q Consensus 1029 ~~~~~~~i~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~-~~~a~~Ai~~---~~~~i~g~ 1103 (1169)
.-..|..|||+||+.+ ++.++|+++|++||.|+.|++ ++++ ..|||.|.+ ..+|..|+.. .+.+|.|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 3457899999999999 999999999999999999875 3333 269999999 7889988876 38999999
Q ss_pred EEEEEe
Q 001060 1104 QVYIEE 1109 (1169)
Q Consensus 1104 ~l~V~~ 1109 (1169)
.++++.
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 888864
No 414
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=98.51 E-value=2.2e-07 Score=90.32 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=65.4
Q ss_pred chhHhHHHHHHHHhhhhCc-----ccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccC-CC
Q 001060 721 AQVGSYFVGQYYQVLQQQP-----DLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW-NG 794 (1169)
Q Consensus 721 ~~vg~~Fv~~YY~~l~~~p-----~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~-~~ 794 (1169)
.+.+..||+.||..|+..+ ..|..|+...+ -+.++|+.+-....-++| ...+++.+.++|+++|||-.. .+
T Consensus 16 ~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~-~Ii~NG~p~a~p~~fqei--w~~Q~p~T~hel~S~D~HVIngsg 92 (184)
T 1of5_B 16 AQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNC-RIIFNATPFAQATVFLQM--WQNQVVQTQHALTGVDYHAIPGSG 92 (184)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-C-CEEETTEEESCHHHHHHH--HHHHSCCCEEEEEEEEEEEETTTT
T ss_pred hhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCc-eEEECCeEcCCHHHHHHH--HHhcCCCceEEEEeEEEEEECCCC
Confidence 4678999999999999977 77888876644 445899887555444333 334888888999999999854 45
Q ss_pred ceEEEEEEEEEecCccccceeEEEEEEEee
Q 001060 795 GVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 824 (1169)
Q Consensus 795 ~ilv~v~G~~~~~~~~~~~~F~q~F~L~~~ 824 (1169)
+|+|+|+|.+.+++. ..-+|.|+|+|.|.
T Consensus 93 sivv~VsgkVRFdEs-grd~fgEtfvLvpn 121 (184)
T 1of5_B 93 TLICNVNCKVRFDES-GRDKMGQDATVPIQ 121 (184)
T ss_dssp EEEEEEEEEEECC-----------------
T ss_pred eEEEEEEEEEEECCC-CCCCCCCeEEECCC
Confidence 799999999999865 33589999999976
No 415
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=2e-05 Score=92.34 Aligned_cols=195 Identities=11% Similarity=0.047 Sum_probs=145.6
Q ss_pred HHcCChHHHHHHHHHHHHhccCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccCh----
Q 001060 367 ERDGDFNKVVKLYERCLIACANYP-----------------EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP---- 425 (1169)
Q Consensus 367 ~~~gd~~~a~~lyeraL~~~~~~~-----------------e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~---- 425 (1169)
.+.|++++|+..|.+++...+... .....++.++...|++++|.+.|.+++.+. +...
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 93 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM-MQFAKSKT 93 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHccchHH
Confidence 467899999999999998876543 357889999999999999999999999876 3322
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001060 426 --EIHLFAARFKEQNGDIDGARAAYQLVHT-----ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 498 (1169)
Q Consensus 426 --~l~~~~a~~~e~~g~~~~A~~~~~~a~~-----~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~ 498 (1169)
.+...++.+....|+++.|..+|+++.. ...+....++..++.++...|++++|..++++++.......+.+.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 3444566677778999999999998621 123445678999999999999999999999999987665444455
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhc---CCCH----HHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001060 499 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV---QLSK----PLLEALIHFESIQSSPKQIDFLEQLVDKFLM 566 (1169)
Q Consensus 499 ~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~---p~s~----~l~~~~a~~E~~~~~~~~~~~~r~l~eral~ 566 (1169)
...++...++++.. .|++++|+.+|++++... ++.. .++.....+....++ .+.+..+|..++.
T Consensus 174 ~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHK-LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD---YKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHH
Confidence 56778888888776 999999999999999864 3333 233344444444444 4445555555543
No 416
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.39 E-value=1.1e-06 Score=82.79 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001060 374 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 453 (1169)
Q Consensus 374 ~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 453 (1169)
.++..|++++...|.++.+|+.++.++...|++++|+..|++++.+. |++..+|+.++.++...|++++|+..|+++ +
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG-L 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-H
Confidence 46677888888888888888888888888888888888888888776 677888888888888888888888888877 4
Q ss_pred hcCC
Q 001060 454 ETSP 457 (1169)
Q Consensus 454 ~~~P 457 (1169)
++.|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 5444
No 417
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=9e-07 Score=78.32 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=58.7
Q ss_pred CceEEEEecCCCC------CCH---HHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeec
Q 001060 1032 EVKSVYVRNLPST------VTA---FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG 1102 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~------~t~---~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g 1102 (1169)
+..+|+|.-++.. .++ .+|.+.|++||.|..+++ +.++ +||+|.+.++|.+||+++|..++|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~-v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRI-NQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEE-ETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEE-ecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 4478999988643 221 568999999999988764 3222 899999999999999999999999
Q ss_pred eEEEEEeccC
Q 001060 1103 RQVYIEERRP 1112 (1169)
Q Consensus 1103 ~~l~V~~~r~ 1112 (1169)
|.|+|..+.+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998764
No 418
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=1e-06 Score=81.73 Aligned_cols=90 Identities=9% Similarity=0.052 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC------HHH
Q 001060 98 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS------VDI 171 (1169)
Q Consensus 98 d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s------~~l 171 (1169)
+.++|..++..+... |++++|...|++++..+|.+..+|..++..+.+.|++++|++.|+++|...|.+ ..+
T Consensus 3 ~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQ--GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 467899999998874 699999999999999999999999999999999999999999999999999988 677
Q ss_pred HHHHHHHHHhhcCCHHHHH
Q 001060 172 WLHYCIFAINTYGDPETIR 190 (1169)
Q Consensus 172 w~~y~~~~~~~~~~~e~Ar 190 (1169)
++.++..+. ..|+.+.++
T Consensus 81 ~~~~~~~~~-~~~~~~~a~ 98 (111)
T 2l6j_A 81 QYRLELAQG-AVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHH-HHHCCCCCS
T ss_pred HHHHHHHHH-HHHhHhhhH
Confidence 776666655 344444333
No 419
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.23 E-value=6.2e-06 Score=73.25 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC 176 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~ 176 (1169)
.+...|..++..+... +++++|..+|++++..+|.+...|..++.++.+.|++++|+..|++++...|.+...|..++
T Consensus 7 ~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4678899999988874 59999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHH
Q 001060 177 IFAI 180 (1169)
Q Consensus 177 ~~~~ 180 (1169)
..+.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 420
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.23 E-value=9.8e-06 Score=71.93 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 435 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~ 435 (1169)
...|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|+..|++++++. |++..++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666655 55566666666555
Q ss_pred HH
Q 001060 436 EQ 437 (1169)
Q Consensus 436 e~ 437 (1169)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 421
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.22 E-value=2e-06 Score=78.99 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=61.6
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccC
Q 001060 94 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVT 166 (1169)
Q Consensus 94 ~nP~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P 166 (1169)
.+|.+..+|..|+..+... |++++|+..|++++..+|.+..+|..++.++.+.|++++|++.|++++...|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH--DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5789999999999998884 5999999999999999999999999999999999999999999999998754
No 422
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=8.4e-07 Score=82.26 Aligned_cols=91 Identities=10% Similarity=0.107 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccC------hHHHH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL------PEIHL 429 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~------~~l~~ 429 (1169)
...|..++..+...|++++|+..|++++...|.++.+|+.++.++...|++++|+..|++++++. |++ ..+++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHH
Confidence 34566666666666677777777777777777666777777766666677777777777766655 454 55555
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 001060 430 FAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 430 ~~a~~~e~~g~~~~A~~~ 447 (1169)
.++.++...|+++.|...
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 555555555554444433
No 423
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.19 E-value=5e-05 Score=82.28 Aligned_cols=84 Identities=23% Similarity=0.257 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhccCCHH--HHHHHHHHHHHc-----CChHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHc-CCHHH
Q 001060 373 NKVVKLYERCLIACANYPE--YWIRYVLCMEAS-----GSMDLAHNALARATHVFVKR-LPEIHLFAARFKEQN-GDIDG 443 (1169)
Q Consensus 373 ~~a~~lyeraL~~~~~~~e--~W~~~a~~l~~~-----g~~e~A~~vl~rAl~~~~p~-~~~l~~~~a~~~e~~-g~~~~ 443 (1169)
.+++.+++|+|..+|.+.+ .|..++.++... |+.++|+..|+||+++. |+ +...+++||+++... |+.++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-P~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-SAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-CTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHhcCCHHH
Confidence 4677778888888887444 787777777663 67777777777777766 43 467777777766663 66666
Q ss_pred HHHHHHHHhhhcCCC
Q 001060 444 ARAAYQLVHTETSPG 458 (1169)
Q Consensus 444 A~~~~~~a~~~~~P~ 458 (1169)
|+..++++ +...|.
T Consensus 259 a~~~L~kA-L~a~p~ 272 (301)
T 3u64_A 259 FDEALDRA-LAIDPE 272 (301)
T ss_dssp HHHHHHHH-HHCCGG
T ss_pred HHHHHHHH-HcCCCC
Confidence 66666666 444443
No 424
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.05 E-value=3.5e-05 Score=83.52 Aligned_cols=123 Identities=12% Similarity=0.077 Sum_probs=94.1
Q ss_pred HhCCCCHHHHHHHHHHHHhh-----h----hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----CCHHHHHH
Q 001060 93 KANSSDFSAWTALLEETEKL-----A----QDNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARV-----GSMDKVVE 156 (1169)
Q Consensus 93 ~~nP~d~~aw~~L~~~~~~~-----~----~~~i~~Ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~-----~~~e~A~~ 156 (1169)
+.+|.|.++++=++...-.. + -..+.+|+..++++|+++|. +...|..++.++.+. |+.++|++
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 44667777655333322211 1 13568899999999999999 677999999999995 99999999
Q ss_pred HHHHHHhccCCC-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001060 157 VYERAVQGVTYS-VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 215 (1169)
Q Consensus 157 l~eraL~~~P~s-~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~ 215 (1169)
+|+|+|++.|.. .+.++.|+.|+....++.+.++++++++|..-+..-....+++...+
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 999999999974 99999999999844699999999999999943221123456655554
No 425
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.00 E-value=1.3e-05 Score=72.86 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=72.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Q 001060 104 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG-YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINT 182 (1169)
Q Consensus 104 ~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~-~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~ 182 (1169)
.++..+.. .+++++|+..|++++..+|.+.. +|..++.++...|++++|++.|++++...|.+...|..
T Consensus 5 ~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELIN--QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHH--HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 45555555 36999999999999999999999 99999999999999999999999999999999888743
Q ss_pred cCCHHHHHHHHHHHHHhcCC
Q 001060 183 YGDPETIRRLFERGLAYVGT 202 (1169)
Q Consensus 183 ~~~~e~Ar~~~erAl~~~g~ 202 (1169)
+.+.++...|++++...+.
T Consensus 75 -~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHC
T ss_pred -HHHHHHHHHHHHHhccCcc
Confidence 1245667777777765544
No 426
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.99 E-value=1.5e-05 Score=72.35 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=48.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhhccChH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001060 395 RYVLCMEASGSMDLAHNALARATHVFVKRLPE-IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 473 (1169)
Q Consensus 395 ~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~-l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 473 (1169)
..+..+...|++++|+..|+++++.. |+++. +|+.+|.++...|++++|+..|+++ ++++|++..+|..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA-IELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTSTHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCcHHHHHH--------
Confidence 34444555556666666666666554 55555 6666666666666666666666665 4556655555432
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 001060 474 GNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 474 g~~e~A~~iy~~Al~~~~ 491 (1169)
+.+.++...|++++...|
T Consensus 75 ~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHHHhccCc
Confidence 234555556665555554
No 427
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.98 E-value=2.1e-05 Score=72.08 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=64.2
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhc
Q 001060 130 EFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV 200 (1169)
Q Consensus 130 ~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~~~~~~~~~~~e~Ar~~~erAl~~~ 200 (1169)
.+|++..+|..++..+.+.|++++|+..|++++...|.+...|+.++..+. ..|++++|+..|+++++..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhh
Confidence 479999999999999999999999999999999999999999999999988 8999999999999999853
No 428
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.92 E-value=1.1e-05 Score=86.10 Aligned_cols=66 Identities=30% Similarity=0.340 Sum_probs=56.2
Q ss_pred CHHHHHHHHhcCCCeeeeeEEee---cCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEEEecc
Q 001060 1046 TAFEIEEEFQNFGRIKPDGVFVR---NRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1111 (1169)
Q Consensus 1046 t~~~L~~~F~~~G~i~~~~i~~~---~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V~~~r 1111 (1169)
.+++|++.|++||.|.++.|... ++.+|+++||+||+|.+.++|.+||.. +|..++||.|+|++..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 45789999999999999875321 234568999999999999999999987 9999999999998753
No 429
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=6.7e-05 Score=89.57 Aligned_cols=137 Identities=12% Similarity=-0.004 Sum_probs=90.3
Q ss_pred HHHcCChHHHHHHHHHHHHHhh----ccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHh----hhc---CCChHHHHHH
Q 001060 400 MEASGSMDLAHNALARATHVFV----KRL---PEIHLFAARFKEQNGDIDGARAAYQLVH----TET---SPGLLEAIIK 465 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~----p~~---~~l~~~~a~~~e~~g~~~~A~~~~~~a~----~~~---~P~~~~~~~~ 465 (1169)
+..+|++++|+.+|++++++.. +++ ..++..+|.++..+|++++|+.+|++++ ..+ .|+....+.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456777777777777776542 122 3455566777777777777777777652 112 3445556899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhh---CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 466 HANMERRLGNLEDAFSLYEQAIAIEK---GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 466 ~a~~e~r~g~~e~A~~iy~~Al~~~~---~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
++.++..+|++++|+.+|++|+++.. +.+| +....+...+...... .+.+++|..+|+++.+..-++..+|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~~e-~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH-PITKDLEAMRMQTEME-LRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999998653 2222 2223344445554443 7789999999999988776666666
No 430
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.84 E-value=0.00072 Score=81.14 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHhhccChHH
Q 001060 358 NWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASG---------SMDLAHNALARATHVFVKRLPEI 427 (1169)
Q Consensus 358 ~W~~yl~~~~~~gd~~~a~~lyeraL~~-~~~~~e~W~~~a~~l~~~g---------~~e~A~~vl~rAl~~~~p~~~~l 427 (1169)
.+...|+.+-+.|+.++|+.+|++.... +.-+...|..++..+...+ .++.|..+|++....-..-+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4667788888999999999999998876 3456667777776665433 36788899988776543446778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh-cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVHTE-TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 506 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~~~-~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~ 506 (1169)
|..+...+.+.|++++|..+|++.... +.| +...|..++..+.+.|++++|..+|++..+..- .++ ...|..+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~----~Pd-~~ty~~L 181 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEV----VPE-EPELAAL 181 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----CCC-HHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCC-HHHHHHH
Confidence 888889999999999999999986322 345 567788889999999999999999999887542 122 4567778
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 507 SRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 507 a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
+..+.+ .|+.++|.++|++..+.
T Consensus 182 i~~~~~-~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 182 LKVSMD-TKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhh-CCCHHHHHHHHHHHHHh
Confidence 888777 99999999999988763
No 431
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.82 E-value=6.3e-05 Score=68.10 Aligned_cols=79 Identities=8% Similarity=-0.045 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001060 95 NSSDFSAWTALLEETEKLAQD-NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 173 (1169)
Q Consensus 95 nP~d~~aw~~L~~~~~~~~~~-~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 173 (1169)
+|.|.+.|..++..+-..+++ ...+|+.+++++|..+|+|...++.++..+.+.|++++|+..|+++|...|. +.|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~--~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP--NLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT--TCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccH
Confidence 789999999999988643211 2689999999999999999999999999999999999999999999999886 5554
Q ss_pred HH
Q 001060 174 HY 175 (1169)
Q Consensus 174 ~y 175 (1169)
.-
T Consensus 80 ~~ 81 (93)
T 3bee_A 80 VT 81 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 432
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.79 E-value=0.00028 Score=68.83 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=95.6
Q ss_pred CChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH----cCCHHHHH
Q 001060 370 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGAR 445 (1169)
Q Consensus 370 gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~----~g~~~~A~ 445 (1169)
+|+++|+.+|+++..... ++.. ++.++...+.++.|+..|++|++. .++..++.++.++.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 367889999999987753 3334 888887777889999999999974 688999999999998 89999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~iy~~Al~~~ 490 (1169)
..|+++ .+. ++...++.++.++.. .+++++|+..|++|++..
T Consensus 82 ~~~~~A-a~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKA-CGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHH-HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999998 443 778999999999998 899999999999999875
No 433
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00068 Score=69.18 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHh---CCH---HHHH-HHHHHHHhccCCC---------HHHHHHH
Q 001060 116 NIVKIRRVYDAFLAE---FPLC-YGYWKKYADHEARV---GSM---DKVV-EVYERAVQGVTYS---------VDIWLHY 175 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~---~P~~-~~~W~~~a~~e~~~---~~~---e~A~-~l~eraL~~~P~s---------~~lw~~y 175 (1169)
.+.+.|+.|++-|.. .-++ -+.|..|+.+.... |.. .... .+++||++.+-++ +.+|+.|
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 577788999988876 2222 58999999987655 332 2244 7999999976433 7889999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhHHHHHHHHH
Q 001060 176 CIFAINTYGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRYFSSFK 249 (1169)
Q Consensus 176 ~~~~~~~~~~~e~Ar~~~erAl~~-~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~---p~~~~~~~~~~~~ 249 (1169)
+.+.. .++....+.+|..+... +|. ....+|..|+.+++..|++++|..||+++++. |...+.+.+..|.
T Consensus 87 a~~~~--~~~~~~p~~if~~L~~~~IG~--~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~ 160 (202)
T 3esl_A 87 INLFL--SNNFHESENTFKYMFNKGIGT--KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYE 160 (202)
T ss_dssp HHHHS--TTCHHHHHHHHHHHHHHTSST--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred HHhhc--ccccCCHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 98852 34466888999988763 444 36799999999999999999999999999997 6555555555553
No 434
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.71 E-value=0.0004 Score=67.90 Aligned_cols=126 Identities=15% Similarity=0.282 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHh---CCHHHHHHHHHHHHhccCCC---------HHHHHHHHHHHHhh
Q 001060 117 IVKIRRVYDAFLAEFPLC--YGYWKKYADHEARV---GSMDKVVEVYERAVQGVTYS---------VDIWLHYCIFAINT 182 (1169)
Q Consensus 117 i~~Ar~~ye~~l~~~P~~--~~~W~~~a~~e~~~---~~~e~A~~l~eraL~~~P~s---------~~lw~~y~~~~~~~ 182 (1169)
...+|+.||..|..+-.+ -+.|..|+.+.... |. .....+++||++.+-++ +.+|+.|+++.
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 345677888877764332 58999999998765 33 44778999999887443 67888888763
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 001060 183 YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 251 (1169)
Q Consensus 183 ~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~p~~~~~~~~~~~~~~ 251 (1169)
.+ .+.+|..+... |.-.....+|..|+.+++..|++++|..||+++++..-.-++.+-..+..|
T Consensus 82 -~d---p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F 145 (152)
T 4a1g_A 82 -SD---LHQFFEFLYNH-GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLF 145 (152)
T ss_dssp -SC---HHHHHHHHHTT-TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred -CC---HHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 23 67888887763 232236799999999999999999999999999997333334444444444
No 435
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.00071 Score=65.96 Aligned_cols=108 Identities=9% Similarity=-0.050 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH----
Q 001060 327 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA---- 402 (1169)
Q Consensus 327 ~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~---- 402 (1169)
.+++++++..|+++++. .. .... ++.++...+..++|+.+|+++... .+++.++.++.++..
T Consensus 8 ~~d~~~A~~~~~~aa~~--------g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL--------NE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYV 73 (138)
T ss_dssp HHHHHHHHHHHHHHHHT--------TC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred ccCHHHHHHHHHHHHcC--------CC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence 35678888899999873 32 2223 777777778889999999999876 789999999999988
Q ss_pred cCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARAAYQLV 451 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~~~~~a 451 (1169)
.+++++|+..|++|++. .++..++.++.++.. .+++++|+..|+++
T Consensus 74 ~~d~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp CCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 78999999999999974 578999999999999 89999999999998
No 436
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00078 Score=68.73 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=69.9
Q ss_pred hhcHHHHHHHHHHHHHc---CCh---HHHH-HHHHHHHHhcc---------CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 353 VTELENWHNYLDFIERD---GDF---NKVV-KLYERCLIACA---------NYPEYWIRYVLCMEASGSMDLAHNALARA 416 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~~~~---gd~---~~a~-~lyeraL~~~~---------~~~e~W~~~a~~l~~~g~~e~A~~vl~rA 416 (1169)
.+-++.|..|+.|.+.. |.. .... .+++||+..+. .+..+|+.|+.++ ..+...++..+|.-.
T Consensus 27 dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L 105 (202)
T 3esl_A 27 DDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYM 105 (202)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHH
Confidence 34488999999998754 332 2355 89999998754 3446999999975 233355677777655
Q ss_pred HHHh-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 417 THVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 417 l~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
...- -.....+|..||.+++..|++.+|.++|+..
T Consensus 106 ~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 106 FNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4311 1357788888888888888888888888886
No 437
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.62 E-value=0.00061 Score=76.94 Aligned_cols=137 Identities=12% Similarity=0.052 Sum_probs=101.5
Q ss_pred hhcHHHHHHHHHHH--HHcC---ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHH---cC-C----hHHHHHHHHHH--H
Q 001060 353 VTELENWHNYLDFI--ERDG---DFNKVVKLYERCLIACANYPEYWIRYVLCMEA---SG-S----MDLAHNALARA--T 417 (1169)
Q Consensus 353 ~~~~~~W~~yl~~~--~~~g---d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~---~g-~----~e~A~~vl~rA--l 417 (1169)
|.++++|..|+.-. ...+ +..+|+.+|++|+..+|.+..+|-.++.++.. .+ . .......++++ +
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 44567777776532 2333 35689999999999999999988876655532 11 1 11111222221 2
Q ss_pred HHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001060 418 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 492 (1169)
Q Consensus 418 ~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~ 492 (1169)
... +..+.+|..++..+...|++++|+..++++ +.++|+ ...|..++.++.-.|+.++|...|++|+.+.|.
T Consensus 271 ~~~-~~~a~~~~alal~~l~~gd~d~A~~~l~rA-l~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 271 PEL-NNLSIIYQIKAVSALVKGKTDESYQAINTG-IDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp GGG-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred ccC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 222 778899999998888889999999999999 788875 567888899999999999999999999999863
No 438
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.62 E-value=0.00062 Score=70.67 Aligned_cols=126 Identities=15% Similarity=0.265 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHh---CC--HHHHHHHHHHHHhccCCC---------HHHHHHHHHH
Q 001060 116 NIVKIRRVYDAFLAE---FPLCYGYWKKYADHEARV---GS--MDKVVEVYERAVQGVTYS---------VDIWLHYCIF 178 (1169)
Q Consensus 116 ~i~~Ar~~ye~~l~~---~P~~~~~W~~~a~~e~~~---~~--~e~A~~l~eraL~~~P~s---------~~lw~~y~~~ 178 (1169)
.+.+.|..|++.|.. ..+--+.|..|+.+.... |. -..-..+++||++.+-++ +.+|+.|+++
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~ 129 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc
Confidence 566778888888865 234569999999988876 22 223678999999987544 6889888875
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhHHHHHHHHH
Q 001060 179 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRYFSSFK 249 (1169)
Q Consensus 179 ~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~---p~~~~~~~~~~~~ 249 (1169)
. +..+.+|..+... |.-.....+|..|+.+++..|++.+|..||+++++. |...+.+.|..|.
T Consensus 130 ~-------~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~ 195 (223)
T 4aez_C 130 I-------DEPVELFSFLAHH-HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFT 195 (223)
T ss_dssp C-------SCHHHHHHHHHHT-TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHH
T ss_pred c-------CCHHHHHHHHHHC-CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 2 3456788877763 332336799999999999999999999999999997 6655555555553
No 439
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.61 E-value=0.00033 Score=83.56 Aligned_cols=97 Identities=8% Similarity=0.065 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----cCCHH---HHHH
Q 001060 324 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIR 395 (1169)
Q Consensus 324 y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-----~~~~e---~W~~ 395 (1169)
+...++|++|+..|+++|...--.+.+..|.-+..+.+++..+...|++++|+.+|+++|... +.+++ .+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455677888888888888643334555666777777788888888888888888888888663 44544 5667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 396 YVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
+|.++..+|++++|..+|++|+.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7777777788888877777777654
No 440
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.55 E-value=0.00097 Score=75.30 Aligned_cols=147 Identities=8% Similarity=0.029 Sum_probs=101.6
Q ss_pred HHHHhccCCHHHHHHHHHHH--HHcC---ChHHHHHHHHHHHHHhhccChHHHHHHHHHHHH---cC-----CHHHHHHH
Q 001060 381 RCLIACANYPEYWIRYVLCM--EASG---SMDLAHNALARATHVFVKRLPEIHLFAARFKEQ---NG-----DIDGARAA 447 (1169)
Q Consensus 381 raL~~~~~~~e~W~~~a~~l--~~~g---~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~---~g-----~~~~A~~~ 447 (1169)
++...-|.+++.|-.|.+.+ ...+ ++.+|+.+|++|+++. |++..+|-.++..+.. .+ ........
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 33444566666555554322 2222 4578999999999988 8888877765544421 11 11112222
Q ss_pred HHHH-hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001060 448 YQLV-HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 526 (1169)
Q Consensus 448 ~~~a-~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~k 526 (1169)
+..+ .+...|....+|..++......|++++|+..+++|+.+++. ...|..++..+.. .|+.++|...|++
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-------~~a~~llG~~~~~-~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-------WLNYVLLGKVYEM-KGMNREAADAYLT 335 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 2221 23567889999998888888889999999999999999742 3456666666655 9999999999999
Q ss_pred HhhhcCCCHH
Q 001060 527 SLDHVQLSKP 536 (1169)
Q Consensus 527 Al~~~p~s~~ 536 (1169)
|+.++|....
T Consensus 336 AlrL~P~~~t 345 (372)
T 3ly7_A 336 AFNLRPGANT 345 (372)
T ss_dssp HHHHSCSHHH
T ss_pred HHhcCCCcCh
Confidence 9999997753
No 441
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.51 E-value=0.0041 Score=74.52 Aligned_cols=162 Identities=10% Similarity=0.047 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHh-ccCCH
Q 001060 321 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG---------DFNKVVKLYERCLIA-CANYP 390 (1169)
Q Consensus 321 ~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~g---------d~~~a~~lyeraL~~-~~~~~ 390 (1169)
...|-+.++.++|+..|+++.++ .++ .+...|..+|..+.+.+ +.++|..+|++.... +.-+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~---Gv~----pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRN---GVQ----LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHH---TCC----CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHc---CCC----CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 45667888999999999998874 122 24567888887664433 367899999998766 34477
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKHANM 469 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~a~~ 469 (1169)
..|..++..+.+.|++++|..+|++..+.-..-+...|..+...+.+.|++++|..+|++... .+.| +...|..++..
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~ 184 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHH
Confidence 889999999999999999999999987653334667888888888999999999999998632 2345 45688899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 001060 470 ERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 470 e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
+.+.|+.++|..+|++..+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT
T ss_pred HhhCCCHHHHHHHHHHHHHhC
Confidence 999999999999999988754
No 442
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.50 E-value=0.00045 Score=62.38 Aligned_cols=71 Identities=10% Similarity=-0.107 Sum_probs=45.4
Q ss_pred ccCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC
Q 001060 386 CANYPEYWIRYVLCMEASGS---MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG 458 (1169)
Q Consensus 386 ~~~~~e~W~~~a~~l~~~g~---~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~ 458 (1169)
.|.++++|..++..+...++ .++|..+|++|+++. |+++..++.+|..+.+.|++++|+.+|+++ ++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~-l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLL-LDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCC
Confidence 35666677777766654433 466666666666655 666666666666666666666666666665 455554
No 443
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.42 E-value=0.00095 Score=65.52 Aligned_cols=98 Identities=12% Similarity=0.007 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHh-hccChHHHHHHHHHHHHcCCHHHHHHH
Q 001060 372 FNKVVKLYERCLIACANYPEYWIRYVLCMEASG---SMDLAHNALARATHVF-VKRLPEIHLFAARFKEQNGDIDGARAA 447 (1169)
Q Consensus 372 ~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g---~~e~A~~vl~rAl~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~ 447 (1169)
..+++..|++.+...+.+.+..++|+..|.+.+ ++++++.+|+..++.. +.+..+.++.+|..+.+.|++++|+..
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 346777888888888889999999999999877 6678999999999876 225678888899889999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHH
Q 001060 448 YQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 448 ~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
++++ +++.|++.++....-.++
T Consensus 94 ~~~l-L~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 94 VRGL-LQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHH-HHHCTTCHHHHHHHHHHH
T ss_pred HHHH-HhcCCCCHHHHHHHHHHH
Confidence 9998 888999877655444333
No 444
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.41 E-value=0.002 Score=63.04 Aligned_cols=103 Identities=16% Similarity=0.281 Sum_probs=69.0
Q ss_pred HHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhccC---------CHHHHHHHHHHHHH
Q 001060 335 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDFNKVVKLYERCLIACAN---------YPEYWIRYVLCMEA 402 (1169)
Q Consensus 335 ~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~---gd~~~a~~lyeraL~~~~~---------~~e~W~~~a~~l~~ 402 (1169)
..||..|.. | ...+-++.|..||.|.++. |. .....+++||+..+.. +..+|+.|+.+.
T Consensus 11 ~~fE~~i~~-y-----~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~-- 81 (152)
T 4a1g_A 11 QMLEAHMQS-Y-----KGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN-- 81 (152)
T ss_dssp HHHHHHTTS-C-----CSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB--
T ss_pred HHHHHHHHh-C-----CCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc--
Confidence 457777763 2 1234488999999998764 33 3478899999988643 346888888753
Q ss_pred cCChHHHHHHHHHHHH--HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
.+ +.++|.-... |- .....+|..||.+++..|++.+|.++|+..
T Consensus 82 -~d---p~~if~~L~~~~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 82 -SD---LHQFFEFLYNHGIG-TLSSPLYIAWAGHLEAQGELQHASAVLQRG 127 (152)
T ss_dssp -SC---HHHHHHHHHTTTTT-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CC---HHHHHHHHHHCCCc-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 5555554432 11 346677777777777777777777777776
No 445
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.35 E-value=0.0015 Score=64.80 Aligned_cols=119 Identities=13% Similarity=0.325 Sum_probs=83.5
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHh---CCH-HHHHHHHHHHHhccCCC---------HHHHHHHHHHHHhhcCCH
Q 001060 122 RVYDAFLAEF--PLCYGYWKKYADHEARV---GSM-DKVVEVYERAVQGVTYS---------VDIWLHYCIFAINTYGDP 186 (1169)
Q Consensus 122 ~~ye~~l~~~--P~~~~~W~~~a~~e~~~---~~~-e~A~~l~eraL~~~P~s---------~~lw~~y~~~~~~~~~~~ 186 (1169)
+.|+..|..+ .+--..|..|+.+.... |.. ..-..+++||+..+-++ +.+|+.|+.+. ++
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~----~~- 78 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC----NE- 78 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC----SC-
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc----CC-
Confidence 3455444322 22258899999987663 222 23467899999887443 68898888763 33
Q ss_pred HHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhHHHHHHHHH
Q 001060 187 ETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRYFSSFK 249 (1169)
Q Consensus 187 e~Ar~~~erAl~~-~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~L~~---p~~~~~~~~~~~~ 249 (1169)
.+.+|..+... +|. ....+|..|+.+++..|++.+|..||+++++. |...+.+.+..|.
T Consensus 79 --p~~if~~L~~~~IG~--~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~ 141 (164)
T 2wvi_A 79 --PLDMYSYLHNQGIGV--SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQ 141 (164)
T ss_dssp --HHHHHHHHHHTTSST--TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCcch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 56778877763 344 36799999999999999999999999999997 6665655555554
No 446
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.32 E-value=0.0016 Score=67.66 Aligned_cols=91 Identities=23% Similarity=0.378 Sum_probs=65.6
Q ss_pred hcHHHHHHHHHHHHHc---C-C-hHHHHHHHHHHHHhccC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 001060 354 TELENWHNYLDFIERD---G-D-FNKVVKLYERCLIACAN---------YPEYWIRYVLCMEASGSMDLAHNALARATH- 418 (1169)
Q Consensus 354 ~~~~~W~~yl~~~~~~---g-d-~~~a~~lyeraL~~~~~---------~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~- 418 (1169)
.-++.|..||.|.+.. | + -.....+++||+..+.. +..+|+.|+.+. +.+..+|.-...
T Consensus 70 DPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~~ 143 (223)
T 4aez_C 70 DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAHH 143 (223)
T ss_dssp CTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHHC
Confidence 4488899999999865 3 2 23478899999998643 346999999842 244455554432
Q ss_pred -HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 419 -VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 419 -~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
|. .....+|..||.+++..|++.+|..+|+..
T Consensus 144 ~IG-~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 144 HIG-QESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp TCS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Ccc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 357788888888888888888888888886
No 447
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00083 Score=60.56 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=59.8
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcC-----CCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHH-HhCCCeeeceEE
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNF-----GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI-QASPIQLAGRQV 1105 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~-----G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai-~~~~~~i~g~~l 1105 (1169)
..++|-+-|||..+++..|+.+++++ |.|+++ .++... |-|+|+|.|...|-+|. ..+|.+|.||.|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI--~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKI--LLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEE--EEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEE--EEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 35788899999999999999999999 999985 344332 46999999999888876 669999999999
Q ss_pred EEEe
Q 001060 1106 YIEE 1109 (1169)
Q Consensus 1106 ~V~~ 1109 (1169)
+|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9853
No 448
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.26 E-value=0.0022 Score=63.51 Aligned_cols=103 Identities=20% Similarity=0.312 Sum_probs=69.1
Q ss_pred HHHHhhccCCcccCCCChhcHHHHHHHHHHHHHc---CCh-HHHHHHHHHHHHhccC---------CHHHHHHHHHHHHH
Q 001060 336 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDF-NKVVKLYERCLIACAN---------YPEYWIRYVLCMEA 402 (1169)
Q Consensus 336 ~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~---gd~-~~a~~lyeraL~~~~~---------~~e~W~~~a~~l~~ 402 (1169)
.||..|. .|- ...-++.|..||.|.+.. |.. .....+++||+..+.. +..+|+.|+.+.
T Consensus 5 ~fE~~i~-~~~-----gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~-- 76 (164)
T 2wvi_A 5 AFEYEIR-FYT-----GNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC-- 76 (164)
T ss_dssp HHHHHCC-CCC-----SSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHh-hcC-----CCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc--
Confidence 4666664 222 234478899999998763 222 2467799999988643 346999888753
Q ss_pred cCChHHHHHHHHHHHH--HhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 403 SGSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 403 ~g~~e~A~~vl~rAl~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
++ ++.+|.-... |. .....+|..||.+++..|++.+|.++|...
T Consensus 77 -~~---p~~if~~L~~~~IG-~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 77 -NE---PLDMYSYLHNQGIG-VSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp -SC---HHHHHHHHHHTTSS-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CC---HHHHHHHHHHCCcc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 4445544332 22 357788888888888888888888888876
No 449
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.26 E-value=0.003 Score=58.11 Aligned_cols=87 Identities=15% Similarity=-0.001 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCHHHH
Q 001060 460 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 538 (1169)
Q Consensus 460 ~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~~l~ 538 (1169)
..-++.++....+.+++..|...|+.|+...+.... ....+.++..++..+++ .|++++|+.++++++++.|++....
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 345678889999999999999999999987643321 23567889999999887 9999999999999999999999887
Q ss_pred HHHHHhHhh
Q 001060 539 EALIHFESI 547 (1169)
Q Consensus 539 ~~~a~~E~~ 547 (1169)
.++..|+..
T Consensus 84 ~n~~~~~~~ 92 (104)
T 2v5f_A 84 GNLKYFEYI 92 (104)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 776666553
No 450
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.21 E-value=0.0012 Score=64.88 Aligned_cols=92 Identities=14% Similarity=-0.019 Sum_probs=78.6
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCHHHHHH
Q 001060 80 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEF-P-LCYGYWKKYADHEARVGSMDKVVE 156 (1169)
Q Consensus 80 ~~~~~~~~l~~al~~nP~d~~aw~~L~~~~~~~~-~~~i~~Ar~~ye~~l~~~-P-~~~~~W~~~a~~e~~~~~~e~A~~ 156 (1169)
.+....+.|.+.+..++.+.++.+.++-.+.++. .+++.+++.+++.++... | .+.++++.++-.+++.++|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3455667778888889999999999998887753 247889999999999998 7 568999999999999999999999
Q ss_pred HHHHHHhccCCCHHH
Q 001060 157 VYERAVQGVTYSVDI 171 (1169)
Q Consensus 157 l~eraL~~~P~s~~l 171 (1169)
.++++|+..|.+...
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999999988644
No 451
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.87 E-value=0.0079 Score=55.20 Aligned_cols=78 Identities=13% Similarity=-0.025 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhc------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 389 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVK------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 389 ~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
+.+-.+.+|.++...++++.|..-|+.|++...+ ....++..++..+.+.|++++|+.+++++ +++.|++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL-LELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH-HhcCCCCHHH
Confidence 3445556666666666666666666666665421 23456666666666666666666666666 5566666555
Q ss_pred HHHHH
Q 001060 463 IIKHA 467 (1169)
Q Consensus 463 ~~~~a 467 (1169)
..++.
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 44444
No 452
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.87 E-value=0.0051 Score=72.06 Aligned_cols=91 Identities=9% Similarity=0.049 Sum_probs=66.7
Q ss_pred cCCHHHHHHHHHHHhh----hcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---CCCccCchHHHHHHHH
Q 001060 438 NGDIDGARAAYQLVHT----ETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK---GKEHSQTLPMLYAQYS 507 (1169)
Q Consensus 438 ~g~~~~A~~~~~~a~~----~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~---~~~~~~~~~~l~~~~a 507 (1169)
.|++++|..+|++++. .+.|+ ....+..++.++..+|++++|+.+|+++|++.. +.+| +.....+.+++
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H-p~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS-LNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHH
Confidence 4566666666666521 13444 445688889999999999999999999998643 2222 33344578888
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhh
Q 001060 508 RFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 508 ~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
.+++. .|++++|..+|++||++
T Consensus 390 ~~~~~-qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMG-LENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHh-ccCHHHHHHHHHHHHHH
Confidence 88776 99999999999999975
No 453
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.64 E-value=0.023 Score=66.59 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----cCCHH---HHHH
Q 001060 324 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIR 395 (1169)
Q Consensus 324 y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-----~~~~e---~W~~ 395 (1169)
+...+++++++..|+++|...--.+.+..+.-+..+.+++..+...|++++|+.+|+++|... +.+++ .+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445678899999999998754444566677777888888888889999999999999998763 55655 6778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHh
Q 001060 396 YVLCMEASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 396 ~a~~l~~~g~~e~A~~vl~rAl~~~ 420 (1169)
+|.++..+|++++|...|++|+++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 8888888999999999999988866
No 454
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.63 E-value=0.024 Score=66.38 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----cCCHH---HHHHHHHHH
Q 001060 329 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIRYVLCM 400 (1169)
Q Consensus 329 ~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~-----~~~~e---~W~~~a~~l 400 (1169)
+|++|+..|+++|...--.+.|..+.-...+.+++..+...|++++|+.+|+++|... +.+++ .+.++|.++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 5778888888887643334455566667777777888888888888888888888652 45554 566777777
Q ss_pred HHcCChHHHHHHHHHHHHHh
Q 001060 401 EASGSMDLAHNALARATHVF 420 (1169)
Q Consensus 401 ~~~g~~e~A~~vl~rAl~~~ 420 (1169)
..+|++++|...|+||+++.
T Consensus 393 ~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHH
Confidence 77888888888888877765
No 455
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.60 E-value=0.013 Score=68.53 Aligned_cols=92 Identities=13% Similarity=0.015 Sum_probs=67.6
Q ss_pred HcCCHHHHHHHHHHHhh----hcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh---CCCccCchHHHHHHH
Q 001060 437 QNGDIDGARAAYQLVHT----ETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK---GKEHSQTLPMLYAQY 506 (1169)
Q Consensus 437 ~~g~~~~A~~~~~~a~~----~~~P~---~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~---~~~~~~~~~~l~~~~ 506 (1169)
.+|++++|+.+|++++. .+.|+ .+.++..++.++..+|++++|+.+|+++|.... +.+| +.....+.++
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H-p~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH-PVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC-hHHHHHHHHH
Confidence 45677777777777621 12333 455678888889999999999999999998643 2222 3334457788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 507 SRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 507 a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
+.+++. .|++++|..+|++|+++
T Consensus 378 a~~~~~-~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLH-QGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHH
Confidence 888776 99999999999999974
No 456
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.58 E-value=0.011 Score=53.11 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=61.1
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhc-----CCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeceEEEE
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQN-----FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1107 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~-----~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g~~l~V 1107 (1169)
+.+|.|.|||..++++.|+-.|++ =|+|..+.. .. +-|+|+|.+.+.+++.|+...+.|+|..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~~-------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--LG-------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--ET-------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--cC-------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 589999999999999999999976 368887542 11 4789999999999999998789999999999
Q ss_pred EeccCCC
Q 001060 1108 EERRPNT 1114 (1169)
Q Consensus 1108 ~~~r~~~ 1114 (1169)
....++.
T Consensus 79 ~P~~~~~ 85 (104)
T 2dhx_A 79 RPAPPRA 85 (104)
T ss_dssp EECCCCC
T ss_pred EcCCCCC
Confidence 8765543
No 457
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.85 E-value=0.068 Score=50.43 Aligned_cols=99 Identities=14% Similarity=0.017 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHHhhc-cChHHHHHHHHHHHHcCCHHHHHH
Q 001060 371 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL---AHNALARATHVFVK-RLPEIHLFAARFKEQNGDIDGARA 446 (1169)
Q Consensus 371 d~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~---A~~vl~rAl~~~~p-~~~~l~~~~a~~~e~~g~~~~A~~ 446 (1169)
....+...|.+.+...+...+.-+.||..|.+...... ++.+|+..+....| ...+..+.+|....+.|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34566778888888778889999999998887765544 77777776664412 455677777888888899999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHH
Q 001060 447 AYQLVHTETSPGLLEAIIKHANME 470 (1169)
Q Consensus 447 ~~~~a~~~~~P~~~~~~~~~a~~e 470 (1169)
.++.+ +++.|++.++....-.++
T Consensus 96 ~~~~l-L~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 96 YVRGL-LQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHH-HHHCTTCHHHHHHHHHHH
T ss_pred HHHHH-HHhCCCCHHHHHHHHHHH
Confidence 88887 788888877755544443
No 458
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.55 E-value=0.31 Score=55.80 Aligned_cols=172 Identities=11% Similarity=-0.005 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhhccChHHHH----
Q 001060 360 HNYLDFIERDGDFNKVVKLYERCLIACAN-----YPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHL---- 429 (1169)
Q Consensus 360 ~~yl~~~~~~gd~~~a~~lyeraL~~~~~-----~~e~W~~~a~~l~~-~g~~e~A~~vl~rAl~~~~p~~~~l~~---- 429 (1169)
..+++.+.+.|+.++...++......... ...+-..+++.+.. .+..+.-..++..+++-. .+....|+
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34556666667777766666654433322 12333344444433 234444455666666533 33333443
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHhhhcCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC-CccCchHH
Q 001060 430 --FAARFKEQNGDIDGARAAYQLVHTETSP-----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK-EHSQTLPM 501 (1169)
Q Consensus 430 --~~a~~~e~~g~~~~A~~~~~~a~~~~~P-----~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~-~~~~~~~~ 501 (1169)
.++.++...|++.+|.+++.++..++.. ...+++..-+.++...+|+.+++.+|.+|......- .++.....
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 5788999999999999999887443322 245678888889999999999999999998865321 11222233
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHhhhcC
Q 001060 502 LYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 532 (1169)
Q Consensus 502 l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p 532 (1169)
+...-+.+.....++++.|...|-++++.+.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 4444444444049999999999999987653
No 459
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.82 E-value=0.082 Score=49.04 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=55.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeec-eEEEEEe
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG-RQVYIEE 1109 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g-~~l~V~~ 1109 (1169)
..+.|-|-+.|... ...|-.+|++||.|.+.. . . ....+-.|.|.+..+|++||..||..|+| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~--~--~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHV--M--S---NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEE--E--C---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEec--c--C---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 45788999999886 556779999999998743 2 1 13469999999999999999999999986 4455544
No 460
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.45 E-value=1.3 Score=50.60 Aligned_cols=175 Identities=17% Similarity=0.162 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhccCCHHH
Q 001060 314 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER-DGDFNKVVKLYERCLIACANYPEY 392 (1169)
Q Consensus 314 ~k~i~~~~~~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~-~gd~~~a~~lyeraL~~~~~~~e~ 392 (1169)
+..+..++++|.+.+++++-...+... |++|..-+.. .-..+-+.+++.... .+..+.-+.+...|+.-+...--.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ka-k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~ 95 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVT--RPFLSSISKA-KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRT 95 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHT--TTGGGGSCHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHhchH-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788999999998877776654 5677654322 334556677776644 355667788888888776655556
Q ss_pred HH------HHHHHHHHcCChHHHHHHHHHHHHHhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhh---hc--C
Q 001060 393 WI------RYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVHT---ET--S 456 (1169)
Q Consensus 393 W~------~~a~~l~~~g~~e~A~~vl~rAl~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~---~~--~ 456 (1169)
|+ +++.++...|++.+|..++.+.++-+.. ...++++.-.+++...+++.+++.+|.++.. .+ .
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 64 7889999999999999999988875522 1235666677888899999999999998731 11 1
Q ss_pred CC-hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhh
Q 001060 457 PG-LLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEK 491 (1169)
Q Consensus 457 P~-~~~~~~~~a~~e~-r~g~~e~A~~iy~~Al~~~~ 491 (1169)
|. ...+...-|.++. ..++|..|...|-.++..+.
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 21 2234555666777 78999999999999987664
No 461
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.33 E-value=0.057 Score=50.75 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=55.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeec---------CCCc-----ccccEEEEEECCHHHHHHHHHhCCCe
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRN---------RKDV-----VGVCYAFVEFEDISGVQNAIQASPIQ 1099 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~---------~~~g-----~~~g~afV~F~~~~~a~~Ai~~~~~~ 1099 (1169)
..|.|-+.|.+.+.. +-+.|++||.|.+. +...+ +... .+.++-.|.|++..+|.+||..||..
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~-~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILED-FEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSC-CGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeee-ccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 567788898766655 55899999999762 11111 0000 13568899999999999999999999
Q ss_pred eeceEEEEEecc
Q 001060 1100 LAGRQVYIEERR 1111 (1169)
Q Consensus 1100 i~g~~l~V~~~r 1111 (1169)
|+|..|-|..-+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999887787654
No 462
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.80 E-value=0.48 Score=44.87 Aligned_cols=98 Identities=7% Similarity=-0.053 Sum_probs=74.2
Q ss_pred ccCCCCCCchHHHHHHHHHHhC--CC-CHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Q 001060 74 VDGSVPAMSGEEDRLWNIVKAN--SS-DFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEFPL-CYGYWKKYADHEARV 148 (1169)
Q Consensus 74 ~~~~~~~~~~~~~~l~~al~~n--P~-d~~aw~~L~~~~~~~~-~~~i~~Ar~~ye~~l~~~P~-~~~~W~~~a~~e~~~ 148 (1169)
.|...+-.+.++..|++..... +. ..++-+.++-.+.++. ..++.+++.+++.++...|. .-++|+.+|--+.+.
T Consensus 12 ~~~~~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl 91 (134)
T 3o48_A 12 KDAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL 91 (134)
T ss_dssp TGGGCCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh
Confidence 3444455667788888777553 21 3455555554443332 34778999999999999994 589999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCCHHH
Q 001060 149 GSMDKVVEVYERAVQGVTYSVDI 171 (1169)
Q Consensus 149 ~~~e~A~~l~eraL~~~P~s~~l 171 (1169)
|+|++|++..+++|+..|.|...
T Consensus 92 gdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 92 GEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHH
T ss_pred hhHHHHHHHHHHHHhhCCCCHHH
Confidence 99999999999999999988644
No 463
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.72 E-value=0.18 Score=44.64 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=42.3
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~ 1095 (1169)
+-++| +.|.++...||.++|+.||.|. |.-.+. .-|||.|.+++.|..|+..
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~---I~WidD------TsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDD------TSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC---CEEEET------TEEEEECSCHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE---EEEEcC------CeEEEEecCHHHHHHHHHh
Confidence 44556 9999999999999999999653 433343 2799999999999999874
No 464
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.50 E-value=0.23 Score=46.85 Aligned_cols=85 Identities=15% Similarity=-0.001 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001060 85 EDRLWNIVKANSSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEF-P-LCYGYWKKYADHEARVGSMDKVVEVYERA 161 (1169)
Q Consensus 85 ~~~l~~al~~nP~d~~aw~~L~~~~~~~~-~~~i~~Ar~~ye~~l~~~-P-~~~~~W~~~a~~e~~~~~~e~A~~l~era 161 (1169)
.+.+.+.+..++-..++-+.++-.+-++. ..++.+.+.+++.++... | ..-++.+.+|-.+.+.|+|++|++.++.+
T Consensus 21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444444555555554444443321 123344555555555544 3 33445555555555555555555555555
Q ss_pred HhccCCCH
Q 001060 162 VQGVTYSV 169 (1169)
Q Consensus 162 L~~~P~s~ 169 (1169)
|+..|.|.
T Consensus 101 L~~eP~n~ 108 (126)
T 1nzn_A 101 LQTEPQNN 108 (126)
T ss_dssp HHHCTTCH
T ss_pred HHhCCCCH
Confidence 55555553
No 465
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=93.39 E-value=0.38 Score=45.12 Aligned_cols=110 Identities=12% Similarity=0.138 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccCCCceEEEEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNGGVLVMVSGS 803 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~~~~ilv~v~G~ 803 (1169)
...+..|+..++ .+.+.|..+|.++..++...+....|...|.+.-..+...++..+.+..++...+ ++..++...-.
T Consensus 9 ~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~-gd~A~~~~~~~ 87 (129)
T 3hx8_A 9 EAANADFVKAYNSKDAAGVASKYMDDAAAFPPDMARVDGRQNIQKLWQGAMDMGISELKLTTLDVQES-GDFAFESGSFS 87 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSCCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCCCcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CCEEEEEEEEE
Confidence 567899999987 6899999999998766533233345555444333333333444555555554432 23233322222
Q ss_pred EEe--cCccccc--eeEEEEEEEee-CCeEEEEcceEE
Q 001060 804 VKT--KEFCRRR--KFVQTFFLAPQ-EKGYFVLNDIFH 836 (1169)
Q Consensus 804 ~~~--~~~~~~~--~F~q~F~L~~~-~~~y~v~nDifr 836 (1169)
++. .+. ... ...-++++..+ +++|.|..|.|-
T Consensus 88 ~~~~~~~G-~~~~~~g~~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 88 LKAPGKDS-KLVDAAGKYVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp EEEECTTS-CEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEeeCCCC-CeeeeeEEEEEEEEECCCCcEEEEEeecc
Confidence 222 122 122 23445666677 789999999983
No 466
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.18 E-value=0.13 Score=46.29 Aligned_cols=73 Identities=8% Similarity=0.084 Sum_probs=58.1
Q ss_pred eEEEEecCCCCC-C----HHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeceEEEE
Q 001060 1034 KSVYVRNLPSTV-T----AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1107 (1169)
Q Consensus 1034 ~~i~V~nlp~~~-t----~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g~~l~V 1107 (1169)
.+|+|.||+.++ . .+.++++|..|+++..... ++ +..-..|.|.+.++|.+|-.. ++..++|+.|+|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lk------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FK------SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ET------TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cC------cceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 689999998765 2 2577999999999987542 32 223568999999999999876 899999999999
Q ss_pred EeccCC
Q 001060 1108 EERRPN 1113 (1169)
Q Consensus 1108 ~~~r~~ 1113 (1169)
-++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998743
No 467
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=93.04 E-value=0.46 Score=46.05 Aligned_cols=108 Identities=8% Similarity=0.105 Sum_probs=67.9
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCceEEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVLVMVS 801 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~ilv~v~ 801 (1169)
..++..|+..++ .+.+.|..+|.++..++ ..|....|...|.+....+..-.+.. +.+...+.....++..++.+.
T Consensus 22 ~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~-~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~A~v~~~ 100 (143)
T 4i4k_A 22 AALPARIVAAWADHDADRFADVFAEDGTMI-LPGLFRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGDGIALLITE 100 (143)
T ss_dssp HTHHHHHHHHHHTTCHHHHHTTEEEEEEEE-ETTEEEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhcCceEE-eCCCeecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCCCEEEEEec
Confidence 567899999887 68999999999987776 56644456555544433333333332 233333332222233444455
Q ss_pred EEEEecCcc---ccceeEEEEEEEeeCCeEEEEcc
Q 001060 802 GSVKTKEFC---RRRKFVQTFFLAPQEKGYFVLND 833 (1169)
Q Consensus 802 G~~~~~~~~---~~~~F~q~F~L~~~~~~y~v~nD 833 (1169)
|.+..++.. +.+.+.+|+++...+++|.|...
T Consensus 101 ~~~~~~g~~~~~~~~~~~~T~v~~r~~g~WrI~~~ 135 (143)
T 4i4k_A 101 GGILAPGETEASGDGAVRASWLAVEQDGQWRLAAY 135 (143)
T ss_dssp EEEECTTCSSCCGGGEEEEEEEEEEETTEEEEEEE
T ss_pred cceecCCCCCCCcccceEEEEEEEEECCcEEEEEe
Confidence 666555532 23678999999999999998763
No 468
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.02 E-value=1.8 Score=54.35 Aligned_cols=131 Identities=13% Similarity=0.116 Sum_probs=79.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcC
Q 001060 360 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 439 (1169)
Q Consensus 360 ~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g 439 (1169)
...+.++++.|..+.|+.+.+ ++..-+.+ ....|++++|.++.+. -+.+..|..+|++..+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~---~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKFEL---ALKVGQLTLARDLLTD------ESAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHHHH---HHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchheeh---hhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcC
Confidence 556677777887777665443 22222222 2356788888766421 246788999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHH
Q 001060 440 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 519 (1169)
Q Consensus 440 ~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~e~ 519 (1169)
+++.|..+|.++ .. +-....++...++.+....+-+.+..... + ..+...+...|++++
T Consensus 696 ~~~~A~~~y~~~-~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----------~--~~A~~~~~~~g~~~~ 754 (814)
T 3mkq_A 696 NFKLAIEAFTNA-HD--------LESLFLLHSSFNNKEGLVTLAKDAETTGK----------F--NLAFNAYWIAGDIQG 754 (814)
T ss_dssp CHHHHHHHHHHH-TC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC----------H--HHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHc-cC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc----------h--HHHHHHHHHcCCHHH
Confidence 999999999886 21 22334444456777766666555554321 1 111111223788888
Q ss_pred HHHHHHHHh
Q 001060 520 ARQILVDSL 528 (1169)
Q Consensus 520 Ar~i~~kAl 528 (1169)
|.++|.+.-
T Consensus 755 a~~~~~~~~ 763 (814)
T 3mkq_A 755 AKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 888877553
No 469
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.95 E-value=0.89 Score=43.04 Aligned_cols=93 Identities=11% Similarity=-0.063 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 376 VKLYERCLIACANYPEYWIRYVLCMEASGSM---DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 376 ~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~---e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
+.-|++=+ ...-.++.-++||..|.+..+. ..++.+|+..+...+....+.++.+|.-..+.|++++|+...+.+
T Consensus 27 ~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l- 104 (134)
T 3o48_A 27 RQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL- 104 (134)
T ss_dssp HHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH-
T ss_pred HHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 33454433 3344678888888888876544 467788888777653355678888888888999999999999987
Q ss_pred hhcCCChHHHHHHHHHHH
Q 001060 453 TETSPGLLEAIIKHANME 470 (1169)
Q Consensus 453 ~~~~P~~~~~~~~~a~~e 470 (1169)
+++.|++.++......++
T Consensus 105 L~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 105 FEHERNNKQVGALKSMVE 122 (134)
T ss_dssp HTTCTTCHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHHH
Confidence 888999877655444333
No 470
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.88 E-value=0.78 Score=45.24 Aligned_cols=113 Identities=16% Similarity=0.062 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccCCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHHhh--ccChHHH
Q 001060 360 HNYLDFIERDGDFNKVVKLYERCLIACANYPE---------YWIRYVLCMEASGSMDLAHNALARATHVFV--KRLPEIH 428 (1169)
Q Consensus 360 ~~yl~~~~~~gd~~~a~~lyeraL~~~~~~~e---------~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~--p~~~~l~ 428 (1169)
+.-++.+...+.++.|+.+...++....++++ +.+.+|+.+..++.+..|...|++|++... ++.+...
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33344456678899999998887766544333 677788888889999999999999987541 1111110
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001060 429 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 485 (1169)
Q Consensus 429 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~ 485 (1169)
-.. + . ...+... .. .+...++-++.+.++..++++++|+.+++.
T Consensus 104 ~~~-------~-~---~ss~p~s-~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 104 PST-------G-N---SASTPQS-QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccc-------c-c---cCCCccc-cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 000 0 0 0000000 11 233556667777777777777777777654
No 471
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.79 E-value=0.11 Score=46.29 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=42.0
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1095 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~ 1095 (1169)
+-++| +.|.++...||.++|+.||.|. |.-.+. .-|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---I~WidD------TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDD------TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---EEEEET------TEEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---EEEEcC------CeEEEEecCHHHHHHHHHh
Confidence 34455 9999999999999999999543 444444 2799999999999999985
No 472
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.54 E-value=3.7 Score=41.04 Aligned_cols=99 Identities=12% Similarity=0.142 Sum_probs=57.7
Q ss_pred HHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHH
Q 001060 366 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 445 (1169)
Q Consensus 366 ~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 445 (1169)
..+.|+++.|..+-+.. .+...|.+++..-..+|+++-|..+|.++-. ...+.+. +...|+.++-.
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~L----y~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFL----YLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHH----HHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHH----HHHhCCHHHHH
Confidence 35677888777765543 6678888888888888888888888876532 2223222 23466666655
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001060 446 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 484 (1169)
Q Consensus 446 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~ 484 (1169)
++-+.+.. .-++. + ......-+|+++++..+|.
T Consensus 81 kla~iA~~--~g~~n-~---af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQT--REDFG-S---MLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHH--TTCHH-H---HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHH--CccHH-H---HHHHHHHcCCHHHHHHHHH
Confidence 55444311 11111 1 1112223577777777764
No 473
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.17 E-value=1.2 Score=42.67 Aligned_cols=98 Identities=7% Similarity=-0.051 Sum_probs=74.2
Q ss_pred ccCCCCCCchHHHHHHHHHHhC---CCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Q 001060 74 VDGSVPAMSGEEDRLWNIVKAN---SSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEFPL-CYGYWKKYADHEARV 148 (1169)
Q Consensus 74 ~~~~~~~~~~~~~~l~~al~~n---P~d~~aw~~L~~~~~~~~-~~~i~~Ar~~ye~~l~~~P~-~~~~W~~~a~~e~~~ 148 (1169)
.|...+-.+.+++.|++..... .-..++-+.++-.+-++. ..++.+.+.+++.++...|. .-++.+.+|--+.+.
T Consensus 11 ~~~~~~l~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl 90 (144)
T 1y8m_A 11 KDAYEPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL 90 (144)
T ss_dssp GGGGCCCCHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHh
Confidence 3333455567788888877655 445566666655544432 35778999999999999995 567888888899999
Q ss_pred CCHHHHHHHHHHHHhccCCCHHH
Q 001060 149 GSMDKVVEVYERAVQGVTYSVDI 171 (1169)
Q Consensus 149 ~~~e~A~~l~eraL~~~P~s~~l 171 (1169)
|+|++|++..+.+|+..|.|-..
T Consensus 91 ~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 91 GEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TCHHHHHHHHHHHHHTCCCCHHH
T ss_pred hhHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999999999999988543
No 474
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=92.12 E-value=0.64 Score=41.10 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=51.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeeec
Q 001060 1034 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1102 (1169)
Q Consensus 1034 ~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g--~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g 1102 (1169)
++|-|++||+.+|++++.+.++....+.... .+..+.+. ...+-|+|.|.+.+++..-.+. +|+.+-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~-fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFE-FFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEE-EEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEE-EeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4789999999999999999999888765533 23322221 2346789999999998888877 7887754
No 475
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.69 E-value=0.079 Score=61.52 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=44.5
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeec
Q 001060 1032 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG 1102 (1169)
Q Consensus 1032 ~~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g~~~g~afV~F~~~~~a~~Ai~~~~~~i~g 1102 (1169)
..++|||. +|..+++.+|.+.|++||+|.++. . ++..| .|+.|||.+.+++.+++....+-..+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~--~-~~~~g---~~~~vef~~~~~~~~~~~~~~~p~~~ 115 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHF--F-YESFG---LYAVVEFCQKESIGSLQNGTHTPXXX 115 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEE--E-ECSSS---EEEEEECC---CCHHHHSSCCCCCCB
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEE--E-EccCC---eEEEEEeCCHHHHHHHHhccCCCccc
Confidence 35899998 799999999999999999999953 3 23222 69999999999999887664444443
No 476
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=91.11 E-value=1.6 Score=42.32 Aligned_cols=115 Identities=15% Similarity=0.179 Sum_probs=69.5
Q ss_pred hHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCceEEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVLVMVS 801 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~ilv~v~ 801 (1169)
..++..|...++ .+.+.|..+|.++..++...|....|...|.+....+..-.+.. +.+...+.....++..++.+.
T Consensus 9 ~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~A~v~~~ 88 (146)
T 3gzr_A 9 QALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGSALAVVT 88 (146)
T ss_dssp HHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCCeeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCCEEEEEEE
Confidence 467889998887 68999999999988777556654556655544443333333332 222222222111233344444
Q ss_pred EEEE---ecCccc--cceeEEEEEEEeeCCeEEEEcceEEecc
Q 001060 802 GSVK---TKEFCR--RRKFVQTFFLAPQEKGYFVLNDIFHFLD 839 (1169)
Q Consensus 802 G~~~---~~~~~~--~~~F~q~F~L~~~~~~y~v~nDifr~~~ 839 (1169)
..++ ..+..+ ...+.+|++|...+++|.|..+--..++
T Consensus 89 ~~l~g~~~~~G~~~~~~~~~~t~v~vr~dg~WrI~a~h~s~v~ 131 (146)
T 3gzr_A 89 LIQDAYVTPDGRQMPRAHDRLTLLAVEREGVWRFIHGHNTIVN 131 (146)
T ss_dssp EEECCEECTTCCEECCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEecceeCCCCCcCCccCcEEEEEEEEECCEEEEEEEecccCc
Confidence 3342 122211 2468999999999999999998776554
No 477
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.07 E-value=1.1 Score=55.43 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=86.2
Q ss_pred HHHHHHHcCC-hHHHHHHHHHHHHhccCCHHHH-HHHHHHHHHcCC-hHHHHHHHHHHHHHhh-----------------
Q 001060 362 YLDFIERDGD-FNKVVKLYERCLIACANYPEYW-IRYVLCMEASGS-MDLAHNALARATHVFV----------------- 421 (1169)
Q Consensus 362 yl~~~~~~gd-~~~a~~lyeraL~~~~~~~e~W-~~~a~~l~~~g~-~e~A~~vl~rAl~~~~----------------- 421 (1169)
++.+....+. ++.++.++++.....|...-+. ..++..+...++ --+|..++.++++...
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3444444555 5779999999888887654322 223333332222 2246677777764321
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 422 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 486 (1169)
Q Consensus 422 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~A 486 (1169)
+....+...-++|+...|+++-|+++-+++ +.+.|.....|..++.++..+|+++.|.-.+..+
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~A-V~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTS-TELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHH-HhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111234555688899999999999999998 8899999999999999999999999999776644
No 478
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.89 E-value=1.5 Score=42.01 Aligned_cols=82 Identities=11% Similarity=-0.039 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001060 387 ANYPEYWIRYVLCMEASGS---MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 463 (1169)
Q Consensus 387 ~~~~e~W~~~a~~l~~~g~---~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 463 (1169)
....+.-++||..|.+..+ ..+++.+++..+...+....+..+.+|.-..+.|+|++|+.+.+.+ +++.|++.++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l-L~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL-FEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH-HhcCCCcHHHH
Confidence 4577888999988888764 4467778888777553245567777777788899999999999987 78899887765
Q ss_pred HHHHHH
Q 001060 464 IKHANM 469 (1169)
Q Consensus 464 ~~~a~~ 469 (1169)
...-.+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 479
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.51 E-value=5.6 Score=39.76 Aligned_cols=110 Identities=9% Similarity=-0.004 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001060 97 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC 176 (1169)
Q Consensus 97 ~d~~aw~~L~~~~~~~~~~~i~~Ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y~ 176 (1169)
.|.+.-+.|+- ++ |+++.|..+.+.+ ++...|..+++..+++|+++-|+++|+++=.. . .+
T Consensus 6 ~D~~~rF~LAL---~l--g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----~-----~L 66 (177)
T 3mkq_B 6 QDPHIRFDLAL---EY--GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF----D-----KL 66 (177)
T ss_dssp SCHHHHHHHHH---HT--TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----H-----HH
T ss_pred CChHHHHHHHH---hc--CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----H-----HH
Confidence 45555555555 32 5899998887665 78899999999999999999999999876332 1 22
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001060 177 IFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 233 (1169)
Q Consensus 177 ~~~~~~~~~~e~Ar~~~erAl~~~g~d~~s~~lw~~y~~~e~~~~~~~~a~~iY~r~ 233 (1169)
.|+....|+.++..++-+.|.. .|. ....+..|+ ..|+++.+.++|.+.
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~-~g~---~n~af~~~l----~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQT-RED---FGSMLLNTF----YNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-TTC---HHHHHHHHH----HHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHH-Ccc---HHHHHHHHH----HcCCHHHHHHHHHHC
Confidence 3333356888888777666664 222 112223333 368999999999765
No 480
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.44 E-value=2.5 Score=53.03 Aligned_cols=47 Identities=9% Similarity=0.064 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccCCCChhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001060 323 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERC 382 (1169)
Q Consensus 323 ~y~~~~~~~~ai~~~e~al~r~~~~v~pl~~~~~~~W~~yl~~~~~~gd~~~a~~lyera 382 (1169)
+....++++.|.+..+. + .+...|..+++...+.++++.|+..|.+|
T Consensus 661 ~~l~~~~~~~A~~~~~~-----------~--~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-----------E--SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-----------C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHh-----------h--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455666666554421 1 23467888888888888888888888875
No 481
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.41 E-value=1.5 Score=54.35 Aligned_cols=119 Identities=10% Similarity=0.003 Sum_probs=78.0
Q ss_pred HHHHHH-HHHHHHHHHHhhccCCcccCCCChh-cHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhc--------------
Q 001060 324 YKKAKE-FDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDF-NKVVKLYERCLIAC-------------- 386 (1169)
Q Consensus 324 y~~~~~-~~~ai~~~e~al~r~~~~v~pl~~~-~~~~W~~yl~~~~~~gd~-~~a~~lyeraL~~~-------------- 386 (1169)
+..+++ ++.++..|++..+ .+|. .......++...+..++. -+++.+..+.|...
T Consensus 258 ~~~t~~~~~~a~~~le~L~~--------~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 258 IAITPSLVDFTIDYLKGLTK--------KDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHTCGGGHHHHHHHHHHHHH--------HCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HcccccHHHHHHHHHHHHHh--------hCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 333444 4667777877766 2332 222223334333333322 25666666665421
Q ss_pred ----cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 387 ----ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 387 ----~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
+...++...-+.||...|+++.|+.+-++|+... |..-..|..++.++...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1112455556788888999999999999999877 888999999999999999999999877753
No 482
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=90.40 E-value=0.86 Score=43.01 Aligned_cols=110 Identities=12% Similarity=0.088 Sum_probs=61.9
Q ss_pred HhHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCC--Cc-ce--eEeeeeccccCCCceE
Q 001060 724 GSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN--FT-AI--EIKTINSLGSWNGGVL 797 (1169)
Q Consensus 724 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~--~~-~~--~i~~~d~q~~~~~~il 797 (1169)
-...+..|+..++ .+.+.+..+|.++..+....+....|. ++|.+.+..+- +. .+ .|..+... .++.++
T Consensus 13 i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~~~~~G~---~ai~~~~~~~~~~~~~~~~~~~~~i~~~--~gd~a~ 87 (135)
T 3d9r_A 13 IEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGK---DELAEVYLSVFETVGFDMAYEIKEVVQT--SADWAF 87 (135)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCEESH---HHHHHHHHHHHHHEEEEEEEEEEEEEEE--ETTEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCCCcccCH---HHHHHHHHHHHhhcCCceeEEEEEEEEe--cCCEEE
Confidence 4678999999998 688999999999865543222222344 44454444321 11 22 23333221 123233
Q ss_pred EEE--EEEEEecCcccc--ceeEEEEEEEee-CCeEEEEcceEEec
Q 001060 798 VMV--SGSVKTKEFCRR--RKFVQTFFLAPQ-EKGYFVLNDIFHFL 838 (1169)
Q Consensus 798 v~v--~G~~~~~~~~~~--~~F~q~F~L~~~-~~~y~v~nDifr~~ 838 (1169)
+.+ .|.++..+..+. ..+.-++++..+ +++|.|..|+|..+
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 88 VRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 332 233333211122 234557788887 89999999999754
No 483
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.36 E-value=2.9 Score=41.17 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhhccChH---------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 394 IRYVLCMEASGSMDLAHNALARATHVFVKRLPE---------IHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 394 ~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~---------l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
+.-+.-+...+.++.|+-+...++.+. .+++. +.+.+|+.+...+++..|...|+++
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344555667788999988888877765 33333 7788899999999999999999987
No 484
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.32 E-value=1.8 Score=50.79 Aligned_cols=169 Identities=7% Similarity=0.030 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHHcCCHHH----------HHH----HHHHHhhhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001060 424 LPEIHLFAARFKEQNGDIDG----------ARA----AYQLVHTETSPG-LLEAIIKHANMERRLGNLEDAFSLYEQAIA 488 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~----------A~~----~~~~a~~~~~P~-~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~ 488 (1169)
...+|+.++.+.+..|+... .|. .+..+.+..+.. ...+|..+...+...+.++.|..+..++.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~- 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE- 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence 45677777777777766543 222 223332333333 34467777778888889999999998875
Q ss_pred hhhCCCccC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCCH---H----HHHHHHHhHhhCCChhHHHHHHHH
Q 001060 489 IEKGKEHSQ-TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK---P----LLEALIHFESIQSSPKQIDFLEQL 560 (1169)
Q Consensus 489 ~~~~~~~~~-~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s~---~----l~~~~a~~E~~~~~~~~~~~~r~l 560 (1169)
+|....+. .....+..++++... .+++.+|...|..|+...|.+. . ++.-++-..+-+|.-.. +.+
T Consensus 259 -fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~----r~l 332 (523)
T 4b4t_S 259 -YPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE----LSF 332 (523)
T ss_dssp -SCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC----HHH
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC----hHH
Confidence 44221111 112233444666554 8999999999999999887542 1 11122222222232111 223
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHhhhCC
Q 001060 561 VDKFLMSNSDSPSTANAAEREELSCVFLEFLG--LFGDAQLIKKAEDRHARLFLP 613 (1169)
Q Consensus 561 ~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~--~~Gd~~~i~~v~~R~~~~~~~ 613 (1169)
|... . + ...+.-|.++.. +.||+.....+..++...|..
T Consensus 333 f~q~-----~----l-----~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~ 373 (523)
T 4b4t_S 333 FHQS-----N----M-----QKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLK 373 (523)
T ss_dssp HTTT-----S----C-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHH
T ss_pred hhch-----h----H-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceecc
Confidence 2210 0 0 012344555443 358999999999999888864
No 485
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=88.96 E-value=1.3 Score=44.29 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=66.7
Q ss_pred HhHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCcc--eeEeeeeccccCCCceEEEE
Q 001060 724 GSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVLVMV 800 (1169)
Q Consensus 724 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~--~~i~~~d~q~~~~~~ilv~v 800 (1169)
=..++..|+..++ .+.+.+..+|.++..++.+.|....|...|.+....+....+.. +.+...+.....++..++.+
T Consensus 18 I~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~A~v~~ 97 (172)
T 3cu3_A 18 IRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQLALMLV 97 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCCCCeEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCCCEEEEEE
Confidence 3568899999987 69999999999987776445544455444433322232222322 22222222222123344445
Q ss_pred EEEEEecCcc---ccceeEEEEEEEeeCCeEEEEcceEE
Q 001060 801 SGSVKTKEFC---RRRKFVQTFFLAPQEKGYFVLNDIFH 836 (1169)
Q Consensus 801 ~G~~~~~~~~---~~~~F~q~F~L~~~~~~y~v~nDifr 836 (1169)
.+.+...+.. +...+..+++|...+++|.|...-..
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~t~v~~r~dG~WrI~~~~~s 136 (172)
T 3cu3_A 98 VIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNT 136 (172)
T ss_dssp EEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEECC
T ss_pred EEEEEeCCCCCcCCccceEEEEEEEEeCCeEEEEEEEcC
Confidence 5557665431 23556778888888999999986654
No 486
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=87.40 E-value=2.2 Score=41.30 Aligned_cols=111 Identities=7% Similarity=0.058 Sum_probs=66.7
Q ss_pred hHHHHHHHHhhh-hCcccccccccCC--ceEEEEcCCcccchhhHHHHHHHHhcCCCcceeEeeeeccccCC-CceEEEE
Q 001060 725 SYFVGQYYQVLQ-QQPDLVHQFYSDA--SSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWN-GGVLVMV 800 (1169)
Q Consensus 725 ~~Fv~~YY~~l~-~~p~~l~~fY~~~--s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~~~~i~~~d~q~~~~-~~ilv~v 800 (1169)
.+-.+.||.-|+ .+.+.|..+|.++ .++++..|....|...+.+--+.+...+ ..+.|...|.+-..+ +..++.+
T Consensus 11 ~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g~~l~G~~ai~~~w~~~f~~~-~~~~i~~~~v~v~~~gd~A~v~~ 89 (144)
T 3gwr_A 11 EAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLAAPLNGRAAVAAGWRSMFGAA-GRFRLQVKAVHEIRQADHVIRIV 89 (144)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTCCCEESHHHHHHHHHHHHHHH-CCEEEEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCCCCcccHHHHHHHHHHHHcCC-CcEEEEEEEEEEEecCCEEEEEE
Confidence 345778888886 7999999999987 4455655555555544432222222211 134555444443222 2345555
Q ss_pred EEEEEecCc-cccceeEEEEEEEeeCCeEEEEcceEE
Q 001060 801 SGSVKTKEF-CRRRKFVQTFFLAPQEKGYFVLNDIFH 836 (1169)
Q Consensus 801 ~G~~~~~~~-~~~~~F~q~F~L~~~~~~y~v~nDifr 836 (1169)
...+...+. .+...+.-|+++..++++|.|...--.
T Consensus 90 ~e~~~~~~~~g~~~~~r~T~V~~r~~g~WrivhhH~S 126 (144)
T 3gwr_A 90 DEFLTIGDETAPRPAILATNVYRREADGWRMVLHHAS 126 (144)
T ss_dssp EEEEEETTCSSCCCCEEEEEEEEECSSSEEEEEEEEE
T ss_pred EEEEEecCCCCceeeEEEEEEEEEECCEEEEEEEecC
Confidence 666766322 122567788888888899999886663
No 487
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.05 E-value=50 Score=38.19 Aligned_cols=105 Identities=15% Similarity=0.129 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hhCCCccCc
Q 001060 425 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-----LLEAIIKHANMERRLGNLEDAFSLYEQAIAI-EKGKEHSQT 498 (1169)
Q Consensus 425 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-----~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~-~~~~~~~~~ 498 (1169)
..+...++.+++..|++.+|..++..+..+..-. -.++++.-+.++...+++.+|..+++++... +....+...
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 4567789999999999999999999875543221 2457888888889999999999999998643 222111111
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhh
Q 001060 499 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 530 (1169)
Q Consensus 499 ~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~ 530 (1169)
...++...+.+... .+++.+|.+.|..++..
T Consensus 217 k~~~~~~~~~~~~~-e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISLH-KREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhc
Confidence 12334555666555 89999999998888764
No 488
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.69 E-value=4.8 Score=46.67 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhcc-Ch----HH
Q 001060 356 LENWHNYLDFIERDGDFNKVVKLYERCLIACA---NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-LP----EI 427 (1169)
Q Consensus 356 ~~~W~~yl~~~~~~gd~~~a~~lyeraL~~~~---~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~-~~----~l 427 (1169)
...+..+++++.+.||++.|..+|.++...|. +-.++|+..+.+....+++..+...+.++..+.... ++ .+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 35688899999999999999999999998874 456899999998888999999999999987765321 22 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 001060 428 HLFAARFKEQNGDIDGARAAYQLVH 452 (1169)
Q Consensus 428 ~~~~a~~~e~~g~~~~A~~~~~~a~ 452 (1169)
....+.++...+++..|...|-.++
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHh
Confidence 3444555566778888777776653
No 489
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.00 E-value=3 Score=48.44 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhh--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC-CChH----HHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHVFV--KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS-PGLL----EAI 463 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~--p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~-P~~~----~~~ 463 (1169)
..+..+|.++.+.|+++.|.++|.++..... ....++++...++....+++..+...+.++..... .++. .+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566777777777777777777777665331 12345555555666666666666666666521111 1111 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001060 464 IKHANMERRLGNLEDAFSLYEQAIAIE 490 (1169)
Q Consensus 464 ~~~a~~e~r~g~~e~A~~iy~~Al~~~ 490 (1169)
...+.+....++|..|...|-.++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 333333444455666665555555444
No 490
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=83.85 E-value=15 Score=35.54 Aligned_cols=113 Identities=13% Similarity=0.151 Sum_probs=62.3
Q ss_pred hhHhHHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcC----CCcceeEeeeeccccCCCce
Q 001060 722 QVGSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISL----NFTAIEIKTINSLGSWNGGV 796 (1169)
Q Consensus 722 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l----~~~~~~i~~~d~q~~~~~~i 796 (1169)
+--...+..|+..++ .+.+.|..+|.++..+. +........|.++|.+.+..+ +...+.+..+.. .++.
T Consensus 20 ~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~--~~~~~~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~---~~gd- 93 (156)
T 3h51_A 20 REVAALFDTWNAALATGNPHKVADLYAPDGVLL--PTVSNEVRASREQIENYFEMFLTKKPKGVINYRTVRL---LDDD- 93 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEE--CSSCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEE---CSSS-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEe--cCCCCccccCHHHHHHHHHHHHhhCCCCcccceEEEE---ecCC-
Confidence 334667888998887 79999999999975543 321111223444555454432 211122223322 2222
Q ss_pred EEEEEEEEEe-----cCccccceeEEEEEEEeeCCeEEEEcceEEeccC
Q 001060 797 LVMVSGSVKT-----KEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDE 840 (1169)
Q Consensus 797 lv~v~G~~~~-----~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~~~~ 840 (1169)
+.+|+|.+.. ++.........|+++...+++|.|..+-+..+.+
T Consensus 94 ~A~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG~WkIv~~H~S~~p~ 142 (156)
T 3h51_A 94 SAVDAGVYTFTLTDKNGKKSDVQARYTFVYEKRDGKWLIINHHSSAMPE 142 (156)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred eEEEEEEEEEEEEcCCCCeEEEEeEEEEEEEEECCEEEEEEEeecCCCc
Confidence 3334554332 2211123346677777889999999988866543
No 491
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=83.24 E-value=2 Score=38.25 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=45.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhcCCCeeeeeEEeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeeec
Q 001060 1033 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1102 (1169)
Q Consensus 1033 ~~~i~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~~~~g--~~~g~afV~F~~~~~a~~Ai~~-~~~~i~g 1102 (1169)
+-+|-|+.||+.+|++++.+.++..=.+.... .+..+.+- ...+-|+|.|.+.+++..-.+. +|..+-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~-fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFE-FFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECC-CCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEE-EeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35799999999999998766655433322111 11111111 1235789999999999988877 7777654
No 492
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.03 E-value=15 Score=39.07 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=48.1
Q ss_pred HHHcCChHHHHHHHHHHHHHhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001060 400 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 462 (1169)
Q Consensus 400 l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 462 (1169)
+.+.|++++|+..+...++.. |.+..+...+.++++-.|++++|.+-++.+ .+++|.....
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~-a~l~p~~~~~ 67 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS-IKLFPEYLPG 67 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCGGGHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCchhhHH
Confidence 345678888888888888776 788888888888888888888888888876 6778876544
No 493
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=81.67 E-value=9.9 Score=48.26 Aligned_cols=95 Identities=5% Similarity=-0.109 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH----hccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhccChHHHHHHH
Q 001060 357 ENWHNYLDFIERDGDFNKVVKLYERCLI----ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 432 (1169)
Q Consensus 357 ~~W~~yl~~~~~~gd~~~a~~lyeraL~----~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~~~~p~~~~l~~~~a 432 (1169)
..+..+|+.+-+.|+.++|..+|++... -+.-+...|.-++.-+.+.|++++|.++|++..+.-..-+...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4567777777778888888888755332 245566777777777777888888888887776544334555666666
Q ss_pred HHHHHcCC-HHHHHHHHHHH
Q 001060 433 RFKEQNGD-IDGARAAYQLV 451 (1169)
Q Consensus 433 ~~~e~~g~-~~~A~~~~~~a 451 (1169)
..+.+.|+ .++|..+|++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHH
Confidence 66777776 36677777765
No 494
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.62 E-value=3.8 Score=46.80 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=32.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001060 362 YLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 418 (1169)
Q Consensus 362 yl~~~~~~gd~~~a~~lyeraL~~~~~~~e~W~~~a~~l~~~g~~e~A~~vl~rAl~ 418 (1169)
+++.+...|++.+++..+++++..+|.+..+|..++..|...|+..+|+.+|+++..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445556666666666666666666666666666666556666666655555443
No 495
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=80.58 E-value=7.7 Score=49.25 Aligned_cols=98 Identities=12% Similarity=0.008 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH---hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHH
Q 001060 391 EYWIRYVLCMEASGSMDLAHNALARATHV---FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKH 466 (1169)
Q Consensus 391 e~W~~~a~~l~~~g~~e~A~~vl~rAl~~---~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~ 466 (1169)
-.+..++..+.+.|++++|..+|.+..+. -..-+...|..+..-+.+.|++++|+++|++... -+.| +.-.|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 35667788888999999999999664321 1123667888888889999999999999998632 2355 45677888
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHh
Q 001060 467 ANMERRLGN-LEDAFSLYEQAIAI 489 (1169)
Q Consensus 467 a~~e~r~g~-~e~A~~iy~~Al~~ 489 (1169)
+..+.+.|+ .++|..+|++....
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 888888887 47888999888764
No 496
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=79.11 E-value=9.1 Score=35.38 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=55.3
Q ss_pred HHHHHHHHhhh-hCcccccccc--cCCceEEEEcCCcccchhhHHHHHHHHhc-C--CC--cceeEeeeeccccCCCceE
Q 001060 726 YFVGQYYQVLQ-QQPDLVHQFY--SDASSMIRVDGDSTESASSMLDIHSLVIS-L--NF--TAIEIKTINSLGSWNGGVL 797 (1169)
Q Consensus 726 ~Fv~~YY~~l~-~~p~~l~~fY--~~~s~~~~~~g~~~~~~~~~~~I~~~~~~-l--~~--~~~~i~~~d~q~~~~~~il 797 (1169)
.-++.+|.-++ .+.+.+..+| .+...++..+| ...| .++|.+.+.. + ++ ..+.+..++.+.. ++.+
T Consensus 9 ~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~~-~~~G---~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~-~~~~- 82 (122)
T 3b7c_A 9 QLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-FRNG---WDETLAAYKKNYPDKESLGELKFTIKEIKML-SNYA- 82 (122)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-EEEC---HHHHHHHHHHHCSSGGGSCEEEEEEEEEEEE-ETTE-
T ss_pred HHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCCc-cccC---HHHHHHHHHHhcCChhhcCeeEEEEEEEEEc-CCCE-
Confidence 34566666665 8999999999 66544443222 2334 4444444332 1 11 1234444454433 2223
Q ss_pred EEEEEEEEecCccccceeEEEEEEEeeCCeEEEEcce
Q 001060 798 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDI 834 (1169)
Q Consensus 798 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDi 834 (1169)
.+|.|.+............-|++|..++++|.|..+-
T Consensus 83 a~v~~~~~~~~~~~~~~~r~T~v~~k~~g~W~Iv~~H 119 (122)
T 3b7c_A 83 AMVVGRWDLKRLKDTPTGVFTLLVEKIDDRWVITMDH 119 (122)
T ss_dssp EEEEEEEEEECSSCCCEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEccCCCCCcEEEEEEEEeCCCEEEEEEe
Confidence 3344544433211122345788999999999998764
No 497
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.34 E-value=5.5 Score=45.49 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHhCCCC------HHHH----------------HHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001060 115 DNIVKIRRVYDAFLAEFPLC------YGYW----------------KKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 172 (1169)
Q Consensus 115 ~~i~~Ar~~ye~~l~~~P~~------~~~W----------------~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 172 (1169)
++...+...++++|.++-.. ...| ..+++.++..|++++|+..+++++..+|.+..+|
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~ 208 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW 208 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 46677788888888865221 1113 2456677788999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001060 173 LHYCIFAINTYGDPETIRRLFERGLA 198 (1169)
Q Consensus 173 ~~y~~~~~~~~~~~e~Ar~~~erAl~ 198 (1169)
..++..+. ..|+..+|++.|+++..
T Consensus 209 ~~lm~al~-~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 209 TQLITAYY-LSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 99999988 88999999999998766
No 498
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.84 E-value=22 Score=41.61 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHHHHHcCChHH----------HHHHHHHHHHHhh-c----cChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001060 387 ANYPEYWIRYVLCMEASGSMDL----------AHNALARATHVFV-K----RLPEIHLFAARFKEQNGDIDGARAAYQLV 451 (1169)
Q Consensus 387 ~~~~e~W~~~a~~l~~~g~~e~----------A~~vl~rAl~~~~-p----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 451 (1169)
.....+|+-|..+++..|+... .+..+-.++.... . ....+|..+.+.+...+.++.|..+..++
T Consensus 178 ~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 178 LINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp -------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3456799999988888776543 2333333333221 1 13568888889999999999999999997
Q ss_pred hhhcCCCh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001060 452 HTETSPGL-------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 493 (1169)
Q Consensus 452 ~~~~~P~~-------~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~ 493 (1169)
. .|.. ....+..+.+..-+++|.+|...+..|+...|..
T Consensus 258 -~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 258 -E--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp -C--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred -c--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 2 4432 2335556788888999999999999999877643
No 499
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=76.84 E-value=11 Score=34.91 Aligned_cols=101 Identities=9% Similarity=0.083 Sum_probs=66.6
Q ss_pred HHHHHHHHhhh-hCcccccccccCCceEEEEcCCcccchhhHHHHHHHHhcCCCc-----ceeEeeeeccccCCCceEEE
Q 001060 726 YFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT-----AIEIKTINSLGSWNGGVLVM 799 (1169)
Q Consensus 726 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~I~~~~~~l~~~-----~~~i~~~d~q~~~~~~ilv~ 799 (1169)
+-|..|+.-++ .+++.|.+-|+++..+....+.... ...+++..+ +..-|.. ...|.++|... +.-++.
T Consensus 13 ~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~~g~~~-~~~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~g---d~A~a~ 87 (120)
T 3fka_A 13 ALVETYVMAMTRGDRPALERIFFGKASEVGHYEGELL-WNSRDAFIA-MCEDAADAETDPFWAISSVSVQG---DIAMLH 87 (120)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEETTEEE-EEEHHHHHH-HHHHHCCSSCCCCEEEEEEEEET---TEEEEE
T ss_pred HHHHHHHHHHHhcCHHHHHhhCCCCeEEEEecCCcEE-EcCHHHHHh-hcCCccCCCCCceEEEEEEEEEC---CEEEEE
Confidence 34889999887 7899999999998877655433322 223333334 4322221 23577777643 333333
Q ss_pred EEEEEEecCccccceeEEEEEEEeeCCeEEEEcceEEe
Q 001060 800 VSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 837 (1169)
Q Consensus 800 v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nDifr~ 837 (1169)
|. +.. ....|+..|.|...+++|-|.|=+|.+
T Consensus 88 v~--~~~----~~~~f~D~~~L~k~dg~WkIv~K~~~~ 119 (120)
T 3fka_A 88 VE--NDW----AGMRFDDFLTVLLHEGSWRIVSKVYRI 119 (120)
T ss_dssp EE--EEE----TTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EE--EEc----CCCceEEEEEEEEeCCEEEEEEEEEEc
Confidence 44 333 246899999999999999999999975
No 500
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=76.07 E-value=53 Score=32.25 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCC---------
Q 001060 424 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE--------- 494 (1169)
Q Consensus 424 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~iy~~Al~~~~~~~--------- 494 (1169)
.++..+.+...+.-.|++..++-++.+. + .+...+--..++.++.++.+|..+++..|+-.-+.+
T Consensus 32 ~~eY~lL~~I~LyyngEY~R~Lf~L~~l----N--T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 32 KPEYRMLMSIVLYLNGEYTRALFHLHKL----N--TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp --CTHHHHHHHHHHTTCHHHHHHHHHTC----C--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred ChHHHhhhhhhhhhcchHhHHHHHHHhc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 3344444555555555555554443331 1 122222223344455566666666666653211100
Q ss_pred ---ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhcCCC
Q 001060 495 ---HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 534 (1169)
Q Consensus 495 ---~~~~~~~l~~~~a~~~~~~~g~~e~Ar~i~~kAl~~~p~s 534 (1169)
+..+.-.++..++.++.. .|+.++|...|.....+.|--
T Consensus 106 ffvd~~DkEfFy~l~a~lltq-~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTL-SGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCH
T ss_pred eeeccchHHHHHHHHHHHHHH-hcCHHHhhhHhhhhcCCcccc
Confidence 011222345667777665 999999999999999887643
Done!