BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001061
(1167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/931 (40%), Positives = 537/931 (57%), Gaps = 77/931 (8%)
Query: 87 VRPRKPISRNHRHHRLVDNKQKTNGVVLEAEVDLTTKGLYDKIQFLDVDGGAWKQGWDVK 146
+RP ++R+ R + D Q VD+ LYD++ F D+DGG WKQGW++K
Sbjct: 16 IRPPLKVARSPRPGQCQDVVQDV------PNVDVQMLELYDRMSFKDIDGGVWKQGWNIK 69
Query: 147 YRGDEWD-HEKLKIFVVPHSHNDPGWKLTVDEYYDRQSRHILDTIVETLSKDARRKFIWE 205
Y +++ H KLK+FVVPHSHNDPGW T +EYY ++HIL + L + KFIW
Sbjct: 70 YDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWA 129
Query: 206 EMSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWL 265
E+SY R++ D E+++ ++VKNGQLE V GGWVM DEANSH+ ++ Q+ EG WL
Sbjct: 130 EISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWL 189
Query: 266 NDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQ 325
+ P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 190 KQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQ 249
Query: 326 SWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQ 385
WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+ P +
Sbjct: 250 IWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISD 308
Query: 386 ENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNP 445
+NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF++INS
Sbjct: 309 QNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQA 368
Query: 446 SLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWS 505
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWS
Sbjct: 369 HFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWS 416
Query: 506 GYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALF 565
GYY SRP+ K +DRVL +RA EM+ A + A+ E+ +L ARR L+LF
Sbjct: 417 GYYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQARRELSLF 468
Query: 566 QHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQ 623
QHHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S F +
Sbjct: 469 QHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDD 528
Query: 624 VR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCV 680
R S + ++ S+ VV+ N L RE++V V+ P ++V D V
Sbjct: 529 SRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPV 588
Query: 681 QSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVK 732
++Q+SP + T ++R+ +KA +P +GL Y + +KP
Sbjct: 589 EAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----ISDSKPEH 643
Query: 733 LKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHING 783
Y+S+ N S P ++ GD +I R L+F GLL+ I
Sbjct: 644 TSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQD 702
Query: 784 SQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRT 838
S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S
Sbjct: 703 SPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLP 761
Query: 839 AWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSD 898
+ + H T + G I+ V++ S ++ E+++R +T ID+ IFY+D
Sbjct: 762 S-----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSGDIFYTD 807
Query: 899 LNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMX 958
LNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEIM
Sbjct: 808 LNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASGELEIMQ 866
Query: 959 XXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 989
QGVLDN+ + ++ +++E
Sbjct: 867 DRRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/931 (40%), Positives = 537/931 (57%), Gaps = 77/931 (8%)
Query: 87 VRPRKPISRNHRHHRLVDNKQKTNGVVLEAEVDLTTKGLYDKIQFLDVDGGAWKQGWDVK 146
+RP ++R+ R + D Q VD+ LYD++ F D+DGG WKQGW++K
Sbjct: 16 IRPPLKVARSPRPGQCQDVVQDV------PNVDVQMLELYDRMSFKDIDGGVWKQGWNIK 69
Query: 147 YRGDEWD-HEKLKIFVVPHSHNDPGWKLTVDEYYDRQSRHILDTIVETLSKDARRKFIWE 205
Y +++ H KLK+FVVPHSHNDPGW T +EYY ++HIL + L + KFIW
Sbjct: 70 YDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWA 129
Query: 206 EMSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWL 265
E+SY R++ D E+++ ++VKNGQLE V GGWVM DEANSH+ ++ Q+ EG WL
Sbjct: 130 EISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWL 189
Query: 266 NDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQ 325
+ P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 190 KQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQ 249
Query: 326 SWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQ 385
WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+ P +
Sbjct: 250 IWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISD 308
Query: 386 ENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNP 445
+NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF++INS
Sbjct: 309 QNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQA 368
Query: 446 SLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWS 505
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWS
Sbjct: 369 HFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWS 416
Query: 506 GYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALF 565
GYY SRP+ K +DRVL +RA EM+ A + A+ E+ +L ARR L+LF
Sbjct: 417 GYYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQARRELSLF 468
Query: 566 QHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQ 623
QHHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S F +
Sbjct: 469 QHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDD 528
Query: 624 VR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCV 680
R S + ++ S+ VV+ N L RE++V V+ P ++V D V
Sbjct: 529 SRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPV 588
Query: 681 QSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVK 732
++Q+SP + T ++R+ +KA +P +GL Y + +KP
Sbjct: 589 EAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----ISDSKPEH 643
Query: 733 LKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHING 783
Y+S+ N S P ++ GD +I R L+F GLL+ I
Sbjct: 644 TSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQD 702
Query: 784 SQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRT 838
S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S
Sbjct: 703 SPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLP 761
Query: 839 AWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSD 898
+ + H T + G I+ V++ S ++ E+++R +T ID+ IFY+D
Sbjct: 762 S-----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSGDIFYTD 807
Query: 899 LNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMX 958
LNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEIM
Sbjct: 808 LNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASGELEIMQ 866
Query: 959 XXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 989
QGVLDN+ + ++ +++E
Sbjct: 867 DRRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/931 (40%), Positives = 537/931 (57%), Gaps = 77/931 (8%)
Query: 87 VRPRKPISRNHRHHRLVDNKQKTNGVVLEAEVDLTTKGLYDKIQFLDVDGGAWKQGWDVK 146
+RP ++R+ R + D Q VD+ LYD++ F D+DGG WKQGW++K
Sbjct: 16 IRPPLKVARSPRPGQCQDVVQDV------PNVDVQMLELYDRMSFKDIDGGVWKQGWNIK 69
Query: 147 YRGDEWD-HEKLKIFVVPHSHNDPGWKLTVDEYYDRQSRHILDTIVETLSKDARRKFIWE 205
Y +++ H KLK+FVVPHSHNDPGW T +EYY ++HIL + L + KFIW
Sbjct: 70 YDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWA 129
Query: 206 EMSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWL 265
E+SY R++ D E+++ ++VKNGQLE V GGWVM DEANSH+ ++ Q+ EG WL
Sbjct: 130 EISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWL 189
Query: 266 NDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQ 325
+ P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 190 KQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQ 249
Query: 326 SWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQ 385
WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+ P +
Sbjct: 250 IWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISD 308
Query: 386 ENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNP 445
+NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF++INS
Sbjct: 309 QNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQA 368
Query: 446 SLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWS 505
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWS
Sbjct: 369 HFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWS 416
Query: 506 GYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALF 565
GYY SRP+ K +DRVL +RA EM+ A + A+ E+ +L ARR L+LF
Sbjct: 417 GYYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQARRELSLF 468
Query: 566 QHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQ 623
QHHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S F +
Sbjct: 469 QHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDD 528
Query: 624 VR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCV 680
R S + ++ S+ VV+ N L RE++V V+ P ++V D V
Sbjct: 529 SRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPV 588
Query: 681 QSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVK 732
++Q+SP + T ++R+ +KA +P +GL Y + +KP
Sbjct: 589 EAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----ISDSKPEH 643
Query: 733 LKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHING 783
Y+S+ N S P ++ GD +I R L+F GLL+ I
Sbjct: 644 TSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQD 702
Query: 784 SQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRT 838
S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S
Sbjct: 703 SPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLP 761
Query: 839 AWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSD 898
+ + H T + G I+ V++ S ++ E+++R +T ID+ IFY+D
Sbjct: 762 S-----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSGDIFYTD 807
Query: 899 LNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMX 958
LNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEIM
Sbjct: 808 LNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASGELEIMQ 866
Query: 959 XXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 989
QGVLDN+ + ++ +++E
Sbjct: 867 DRRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/931 (40%), Positives = 537/931 (57%), Gaps = 77/931 (8%)
Query: 87 VRPRKPISRNHRHHRLVDNKQKTNGVVLEAEVDLTTKGLYDKIQFLDVDGGAWKQGWDVK 146
+RP ++R+ R + D Q VD+ LYD++ F D+DGG WKQGW++K
Sbjct: 16 IRPPLKVARSPRPGQCQDVVQDV------PNVDVQMLELYDRMSFKDIDGGVWKQGWNIK 69
Query: 147 YRGDEWD-HEKLKIFVVPHSHNDPGWKLTVDEYYDRQSRHILDTIVETLSKDARRKFIWE 205
Y +++ H KLK+FVVPHSHNDPGW T +EYY ++HIL + L + KFIW
Sbjct: 70 YDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWA 129
Query: 206 EMSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWL 265
E+SY R++ D E+++ ++VKNGQLE V GGWVM DEANSH+ ++ Q+ EG WL
Sbjct: 130 EISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWL 189
Query: 266 NDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQ 325
+ P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 190 KQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQ 249
Query: 326 SWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQ 385
WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+ P +
Sbjct: 250 IWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISD 308
Query: 386 ENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNP 445
+NV R+ L+DQ+KKK+ LYRTN LL+PLGD+FR+ E + Q NY+ LF++INS
Sbjct: 309 QNVAARSDLLVDQWKKKAELYRTNVLLIPLGDNFRFKQNTEWDVQRVNYERLFEHINSQA 368
Query: 446 SLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWS 505
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWS
Sbjct: 369 HFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWS 416
Query: 506 GYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALF 565
GYY SRP+ K +DRVL +RA EM+ A + A+ E+ +L ARR L+LF
Sbjct: 417 GYYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQARRELSLF 468
Query: 566 QHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQ 623
QHHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S F +
Sbjct: 469 QHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDD 528
Query: 624 VR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCV 680
R S + ++ S+ VV+ N L RE++V V+ P ++V D V
Sbjct: 529 SRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPV 588
Query: 681 QSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVK 732
++Q+SP + T ++R+ +KA +P +GL Y + +KP
Sbjct: 589 EAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----ISDSKPEH 643
Query: 733 LKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHING 783
Y+S+ N S P ++ GD +I R L+F GLL+ I
Sbjct: 644 TSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQD 702
Query: 784 SQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRT 838
S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S
Sbjct: 703 SPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLP 761
Query: 839 AWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSD 898
+ + H T + G I+ V++ S ++ E+++R +T ID+ IFY+D
Sbjct: 762 S-----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSGDIFYTD 807
Query: 899 LNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMX 958
LNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEIM
Sbjct: 808 LNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASGELEIMQ 866
Query: 959 XXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 989
QGVLDN+ + ++ +++E
Sbjct: 867 DRRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/900 (41%), Positives = 526/900 (58%), Gaps = 71/900 (7%)
Query: 118 VDLTTKGLYDKIQFLDVDGGAWKQGWDVKYRGDEWD-HEKLKIFVVPHSHNDPGWKLTVD 176
VD+ LYD++ F D+DGG WKQGW++KY +++ H KLK+FVVPHSHNDPGW T +
Sbjct: 11 VDVQMLELYDRMSFKDIDGGVWKQGWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFE 70
Query: 177 EYYDRQSRHILDTIVETLSKDARRKFIWEEMSYLERWWRDSSESQRASFTNLVKNGQLEI 236
EYY ++HIL + L + KFIW E+SY R++ D E+++ ++VKNGQLE
Sbjct: 71 EYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEF 130
Query: 237 VGGGWVMNDEANSHYFAIIEQIMEGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMG 296
V GGWVM DEANSH+ ++ Q+ EG WL + P SWAIDPFG+S TM Y+L++ G
Sbjct: 131 VTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQKSG 190
Query: 297 FENMLIQRTHYELKKELALHQNLEYIWRQSWDTEETSDIFVHMMPFYSYDIPHTCGPEPA 356
F+NMLIQRTHY +KKELA + LE++WRQ WD + + +F HMMPFYSYDIPHTCGP+P
Sbjct: 191 FKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPK 250
Query: 357 VCCQFDFARMGGFFYEACPWRQNPVETNQENVQERALKLLDQYKKKSTLYRTNTLLVPLG 416
VCCQFDF RMG F +CPW+ P + +NV R+ L+DQ+KKK+ LYRTN LL+PLG
Sbjct: 251 VCCQFDFKRMGSFGL-SCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLG 309
Query: 417 DDFRYTTINEAEAQFRNYQLLFDYINSNPSLNAEAKFGTLDDYFRTLREEADRINYSRPG 476
DDFR+ E + Q NY+ LF++INS N +A+FGTL +YF + +A+R
Sbjct: 310 DDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAV-HQAER------- 361
Query: 477 EIGSGQVEGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALLL 536
+GQ E FP+LSGDFFTYADR +YWSGYY SRP+ K +DRVL +RA EM+ A
Sbjct: 362 ---AGQAE-FPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSA-WH 416
Query: 537 GYCQRAQCEKLPMSFAYKLTAARRNLALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQI 596
+ A+ E+ +L ARR L+LFQHHDG+TGTAK HVV+DY RM +L+ Q+
Sbjct: 417 SWDGMARIEE-------RLEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQM 469
Query: 597 FMSKAIEVLLGIRERY--DQNLSQFEPEQVR---SKYDAQPVHKVINVHEGTSQSVVIFN 651
M +++ LL Y D + S F + R S + ++ S+ VV+ N
Sbjct: 470 VMQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHN 529
Query: 652 PLEQTREEIVMVIVNRPDITVLDSNWTCVQSQISPELRHGKSKIF--------TGRHRLH 703
L RE++V V+ P ++V D V++Q+SP + T ++R+
Sbjct: 530 TLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRII 589
Query: 704 WKATIPALGLQVYYIANGFVGCDKAKPVKLKYSSD-----NSFSCPTPYACSKIE-GDVA 757
+KA +P +GL Y + +KP Y+S+ N S P ++ GD
Sbjct: 590 FKARVPPMGLATYVLT-----ISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPR 644
Query: 758 DIRNR---HQILSFDVRHGLLQKISHINGSQNV-VEEEIDMYS--SQG--SGAYLFMPNG 809
+I R L+F GLL+ I S +V V + Y S G SGAYLF+PNG
Sbjct: 645 EISLRVGNGPTLAFS-EQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNG 703
Query: 810 DAHPITEAGGLMVISKGPLMEEAYSYPRTAWERSPISHSTRLYNGNNMIQEFLIEKEYHV 869
A P+ +++++KG L E + S + + H T + G I+ V
Sbjct: 704 PASPVELGQPVVLVTKGKL-ESSVSVGLPS-----VVHQTIMRGGAPEIRNL-------V 750
Query: 870 ELLSHNFNDRELIVRYKTDIDNKRIFYSDLNGFQMSRRETYDKIPLQGNYYPMPALAFMQ 929
++ S ++ E+++R +T ID+ IFY+DLNG Q +R DK+PLQ NYYP+P+ F++
Sbjct: 751 DIGS--LDNTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIE 808
Query: 930 GSNGQRFSVHSRQSLGVASLKDGWLEIMXXXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 989
+N R ++ + Q LG +SL G LEIM QGVLDN+ + ++ +++E
Sbjct: 809 DAN-TRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLE 867
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/931 (40%), Positives = 536/931 (57%), Gaps = 77/931 (8%)
Query: 87 VRPRKPISRNHRHHRLVDNKQKTNGVVLEAEVDLTTKGLYDKIQFLDVDGGAWKQGWDVK 146
+RP ++R+ R + D Q VD+ LYD++ F D+DGG WKQGW++K
Sbjct: 16 IRPPLKVARSPRPGQCQDVVQDV------PNVDVQMLELYDRMSFKDIDGGVWKQGWNIK 69
Query: 147 YRGDEWD-HEKLKIFVVPHSHNDPGWKLTVDEYYDRQSRHILDTIVETLSKDARRKFIWE 205
Y +++ H KLK+FVVPHSHNDPGW T +EYY ++HIL + L + KFIW
Sbjct: 70 YDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWA 129
Query: 206 EMSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWL 265
E+SY R++ D E+++ ++VKNGQLE V GGWVM DEANSH+ ++ Q+ EG WL
Sbjct: 130 EISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWL 189
Query: 266 NDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQ 325
+ P SWAI PFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + LE++WRQ
Sbjct: 190 KQFMNVTPTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQ 249
Query: 326 SWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQ 385
WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+ P +
Sbjct: 250 IWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISD 308
Query: 386 ENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNP 445
+NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF++INS
Sbjct: 309 QNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQA 368
Query: 446 SLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWS 505
N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR +YWS
Sbjct: 369 HFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADRSDNYWS 416
Query: 506 GYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALF 565
GYY SRP+ K +DRVL +RA EM+ A + A+ E+ +L ARR L+LF
Sbjct: 417 GYYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQARRELSLF 468
Query: 566 QHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQ 623
QHHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S F +
Sbjct: 469 QHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDD 528
Query: 624 VR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCV 680
R S + ++ S+ VV+ N L RE++V V+ P ++V D V
Sbjct: 529 SRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPV 588
Query: 681 QSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVK 732
++Q+SP + T ++R+ +KA +P +GL Y + +KP
Sbjct: 589 EAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----ISDSKPEH 643
Query: 733 LKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQKISHING 783
Y+S+ N S P ++ GD +I R L+F GLL+ I
Sbjct: 644 TSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKSIQLTQD 702
Query: 784 SQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRT 838
S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E + S
Sbjct: 703 SPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESSVSVGLP 761
Query: 839 AWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSD 898
+ + H T + G I+ V++ S ++ E+++R +T ID+ IFY+D
Sbjct: 762 S-----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSGDIFYTD 807
Query: 899 LNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMX 958
LNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G LEIM
Sbjct: 808 LNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASGELEIMQ 866
Query: 959 XXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 989
QGVLDN+ + ++ +++E
Sbjct: 867 DRRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 608 bits (1569), Expect = e-174, Method: Compositional matrix adjust.
Identities = 363/900 (40%), Positives = 509/900 (56%), Gaps = 71/900 (7%)
Query: 118 VDLTTKGLYDKIQFLDVDGGAWKQGWDVKYRGDEWD-HEKLKIFVVPHSHNDPGWKLTVD 176
VD+ LYD+ F D+DGG WKQGW++KY +++ H KLK+FVVPHSHNDPGW T +
Sbjct: 11 VDVQXLELYDRXSFKDIDGGVWKQGWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFE 70
Query: 177 EYYDRQSRHILDTIVETLSKDARRKFIWEEMSYLERWWRDSSESQRASFTNLVKNGQLEI 236
EYY ++HIL + L + KFIW E+SY R++ D E+++ ++VKNGQLE
Sbjct: 71 EYYQHDTKHILSNALRHLHDNPEXKFIWAEISYFARFYHDLGENKKLQXKSIVKNGQLEF 130
Query: 237 VGGGWVMNDEANSHYFAIIEQIMEGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMG 296
V GGWV DEANSH+ ++ Q+ EG WL P SWAIDPFG+S T Y+L++ G
Sbjct: 131 VTGGWVXPDEANSHWRNVLLQLTEGQTWLKQFXNVTPTASWAIDPFGHSPTXPYILQKSG 190
Query: 297 FENMLIQRTHYELKKELALHQNLEYIWRQSWDTEETSDIFVHMMPFYSYDIPHTCGPEPA 356
F+NMLIQRTHY +KKELA + LE++WRQ WD + + +F H PFYSYDIPHTCGP+P
Sbjct: 191 FKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHXXPFYSYDIPHTCGPDPK 250
Query: 357 VCCQFDFARMGGFFYEACPWRQNPVETNQENVQERALKLLDQYKKKSTLYRTNTLLVPLG 416
VCCQFDF R G F +CPW+ P + +NV R+ L+DQ+KKK+ LYRTN LL+PLG
Sbjct: 251 VCCQFDFKRXGSFGL-SCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLG 309
Query: 417 DDFRYTTINEAEAQFRNYQLLFDYINSNPSLNAEAKFGTLDDYFRTLREEADRINYSRPG 476
DDFR+ E + Q NY+ LF++INS N +A+FGTL +YF + +A+R
Sbjct: 310 DDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAV-HQAER------- 361
Query: 477 EIGSGQVEGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALLL 536
+GQ E FP+LSGDFFTYADR +YWSGYY SRP+ K DRVL +RA E + A
Sbjct: 362 ---AGQAE-FPTLSGDFFTYADRSDNYWSGYYTSRPYHKRXDRVLXHYVRAAEXLSA-WH 416
Query: 537 GYCQRAQCEKLPMSFAYKLTAARRNLALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQI 596
+ A+ E+ +L ARR L+LFQHHDG+TGTAK HVV+DY R +L+ Q
Sbjct: 417 SWDGMARIEE-------RLEQARRELSLFQHHDGITGTAKTHVVVDYEQRXQEALKACQX 469
Query: 597 FMSKAIEVLLGIRERY--DQNLSQFEPEQVR---SKYDAQPVHKVINVHEGTSQSVVIFN 651
+++ LL Y D + S F + R S + ++ S+ VV N
Sbjct: 470 VXQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVXHN 529
Query: 652 PLEQTREEIVMVIVNRPDITVLDSNWTCVQSQISPELRHGKSKIF--------TGRHRLH 703
L RE++V V+ P ++V D V++Q+SP + T ++R+
Sbjct: 530 TLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRII 589
Query: 704 WKATIPALGLQVYYIANGFVGCDKAKPVKLKYSSD-----NSFSCPTPYACSKIE-GDVA 757
+KA +P GL Y + +KP Y+S+ N S P ++ GD
Sbjct: 590 FKARVPPXGLATYVLT-----ISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPR 644
Query: 758 DIRNR---HQILSFDVRHGLLQKISHINGSQNV-VEEEIDMYS--SQG--SGAYLFMPNG 809
+I R L+F GLL+ I S +V V + Y S G SGAYLF+PNG
Sbjct: 645 EISLRVGNGPTLAFS-EQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNG 703
Query: 810 DAHPITEAGGLMVISKGPLMEEAYSYPRTAWERSPISHSTRLYNGNNMIQEFLIEKEYHV 869
A P+ +++++KG L E + S + + H T G I+ V
Sbjct: 704 PASPVELGQPVVLVTKGKL-ESSVSVGLPS-----VVHQTIXRGGAPEIRNL-------V 750
Query: 870 ELLSHNFNDRELIVRYKTDIDNKRIFYSDLNGFQMSRRETYDKIPLQGNYYPMPALAFMQ 929
++ S ++ E++ R +T ID+ IFY+DLNG Q +R DK+PLQ NYYP+P+ F++
Sbjct: 751 DIGS--LDNTEIVXRLETHIDSGDIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGXFIE 808
Query: 930 GSNGQRFSVHSRQSLGVASLKDGWLEIMXXXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 989
+N R ++ + Q LG +SL G LEI QGVLDN+ + ++ +++E
Sbjct: 809 DAN-TRLTLLTGQPLGGSSLASGELEIXQDRRLASDDERGLGQGVLDNKPVLHIYRLVLE 867
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 156 bits (394), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 154/310 (49%), Gaps = 38/310 (12%)
Query: 155 EKLKIFVVPHSHNDPGWKLTVDEYY--------DRQSRHILDTIVETLSKDARRKFIWEE 206
+ L + +VPH+H+D GW TVD+Y+ ++ILD+++ +L + R+FI+ E
Sbjct: 12 DMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRFIYVE 71
Query: 207 MSYLERWWRDSSESQRASFTNLVKNGQLEIVGGGWVMNDEANSHYFAIIEQIMEGNMWLN 266
+++ RWWR + + + LV+ G+LE GGWVMNDEA +HY AII+Q+ G +L
Sbjct: 72 IAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLE 131
Query: 267 DTIGF--IPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWR 324
+T G P+ +W IDPFG+S A L +MGF+ R Y+ KK +E +WR
Sbjct: 132 ETFGSDGRPRVAWHIDPFGHSREQASLFAQMGFDGFFFGRLDYQDKKVRKKTLQMEQVWR 191
Query: 325 QSWDTE-ETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVET 383
S + T+D+F ++ P+ P +C A PV
Sbjct: 192 ASTSLKPPTADLFTSVL-------PNMYNPPEGLCWDMLCA-------------DKPVVE 231
Query: 384 NQENVQERALKLLDQYKKKST----LYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFD 439
+ + + A +L+ + K +T LYRT ++ +G DF+Y N F+N L
Sbjct: 232 DTRSPEYNAKELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENAN---TWFKNLDKLIQ 288
Query: 440 YINSNPSLNA 449
+N+ N
Sbjct: 289 LVNAQQRANG 298
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 282
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 20/171 (11%)
Query: 796 SSQGSGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRTAWERSPISHSTRLYNGN 855
SSQ SGAY+F PN + + K L++E + +AW S RLY
Sbjct: 51 SSQASGAYIFRPNQNKPLFVSHWAQTHLVKASLVQEVHQ-NFSAW----CSQVVRLYP-- 103
Query: 856 NMIQEFLIEKEYHVELLSHNFN-DRELIVRYKTDIDNKRIFYSDLNGFQ-MSRRETYDKI 913
++ +E E+ V + +E+I R+ T + + +FY+D NG + + RR Y
Sbjct: 104 ---RQRHLELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREILERRRNYRPT 160
Query: 914 -------PLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIM 957
P+ GNYYP+ + ++ N Q +V + +S G +SL+DG LE+M
Sbjct: 161 WKLNQTEPVAGNYYPVNSRIYITDGNMQ-LTVLTDRSQGGSSLRDGSLELM 210
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 28/162 (17%)
Query: 562 LALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY----DQNLS 617
+A+ QHHD V+GT++ HV DY ++ + ++ MS A+ L G++E + N+S
Sbjct: 10 MAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGLKEDFAFCRKLNIS 69
Query: 618 QFEPEQVRSKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNW 677
Q ++ V+++NPL + + +V + V++ V D
Sbjct: 70 ICPLTQTAERFQ-----------------VIVYNPLGRKVDWMVRLPVSKHVYLVKDPGG 112
Query: 678 TCVQSQISPELRHGKSKIFTGRHRLHWKATIPALGLQVYYIA 719
V S + + + L + A +PA+G +Y ++
Sbjct: 113 KIVPSDVV-------TIPSSDSQELLFSALVPAVGFSIYSVS 147
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 84
Score = 37.7 bits (86), Expect = 0.040, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 492 DFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVAL 534
DFF YAD +W+GY+ SRP K +R+ L+ + AL
Sbjct: 30 DFFPYADGPYMFWTGYFSSRPALKRYERLSYNFLQVCNQLEAL 72
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 457 DDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSG 491
D YFR R+ AD++ YS+P + S FP+L G
Sbjct: 260 DPYFRVCRDVADKLKYSKPALLHS---RFFPALQG 291
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 457 DDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSG 491
D YFR R+ AD++ YS+P + S FP+L G
Sbjct: 260 DPYFRVCRDVADKLKYSKPALLHS---RFFPALQG 291
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 130 QFLDVDGGAWKQGWDVKYRGDE-----WDHEKLKIFVVPHSHNDPGWKLTVDEYYDRQSR 184
+ +++DG W+ W ++ G E W EK ++ PGW EYY +
Sbjct: 4 EVIEIDGKQWRLIWHDEFEGSEVNKEYWTFEKGNGI----AYGIPGWGNGELEYYTENNT 59
Query: 185 HILDTIVETLSKDARRKFI 203
+I++ TL +AR++ I
Sbjct: 60 YIVNG---TLVIEARKEII 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,900,955
Number of Sequences: 62578
Number of extensions: 1490187
Number of successful extensions: 2929
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2852
Number of HSP's gapped (non-prelim): 21
length of query: 1167
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1057
effective length of database: 8,089,757
effective search space: 8550873149
effective search space used: 8550873149
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)