BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001062
(1167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/1153 (43%), Positives = 730/1153 (63%), Gaps = 32/1153 (2%)
Query: 2 ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD 61
A+ ++ +LEK+T DKDFR+MAT+DL+ EL K+S K D D E K+ ++++ L+D G+
Sbjct: 4 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63
Query: 62 VSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEV----TT 117
V LAVKCL PLV KV E +V + D LC +L+ K+Q RDI+SI LKT+I E+ +
Sbjct: 64 VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123
Query: 118 SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLP 177
S+LA ++ +T +LT I K + ++ E LDI+ D+L + G L+ N H +L+ LLP
Sbjct: 124 SALAANVCKKITGRLTSAIA-KQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP 182
Query: 178 QLSANQASVRKKSVSCIXXXXXXXXXXXXXXXTIEVVRNLRSKGAKPEMI---RTNIQMV 234
QL++ + +VRK+++ + ++++ +L S+ +K + + RT IQ +
Sbjct: 183 QLTSPRLAVRKRTIIALGHLVMSCGNIVF----VDLIEHLLSELSKNDSMSTTRTYIQCI 238
Query: 235 GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD 294
A+SR G+R G +L +P+++ +C +D+ELREY +QA ESF+ RCP+++ +
Sbjct: 239 AAISRQAGHRIGEYLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRCPKEVYPHVS 295
Query: 295 EILHLTLEYLSYDPNFT---DNMXXXXXXXXXXXXXXXXXXXXXTDDEDASWKVRRAAAK 351
I+++ L+YL+YDPN+ ++ +DD+D SWKVRRAAAK
Sbjct: 296 TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK 355
Query: 352 CLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDN 411
CL A++ +R EML + Y+ P LI RFKEREENVK DVF+ ++ L++QT V D
Sbjct: 356 CLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDP 415
Query: 412 NEL----NPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGS 467
+ + P +L+ +V IVK++++Q++EKS+KT+ F++L ELV VLP L HI
Sbjct: 416 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 475
Query: 468 LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKV 527
L+PGI SLNDKSS+SNLKI+AL+ ++L +HSP VFHP+++AL PV+A VG+ +YK+
Sbjct: 476 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 535
Query: 528 TAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGL 587
T+EAL V +LV+V+RP + FD PY++ ++ + RL D DQEVKE AISCMG
Sbjct: 536 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595
Query: 588 VISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAEL 647
+I GDNLG++LP L + ++R+ NEITRLT VKA +IA SPL IDL VL + L
Sbjct: 596 IICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPIL 655
Query: 648 TAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALEL 707
+FLRK RAL+ TL ++ L+ Y D + A+ + ++ EL LIS+SD+H++ +A+
Sbjct: 656 ASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISF 715
Query: 708 CCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANXXXXX 767
TL + P+ + +L + + L++S LLQG AL A+ FF ALV +
Sbjct: 716 LTTL---AKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY 772
Query: 768 XXXXXXXXAKPSPQSGGVA-KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSST 826
QS + KQ+ YSIA+CVA L A + + + + D+ K+ ST
Sbjct: 773 MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV-KNSRST 831
Query: 827 NSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSK 886
+S + LALL LGE+G DLS +++VI+E+F SP EE+KSAASYALG+I+VGNL +
Sbjct: 832 DSIRL-LALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPE 890
Query: 887 FLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGV 946
+LPF+L +I +Q K+QYLLLHSLKE+I SV + VE I LL HCE EEG
Sbjct: 891 YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGT 947
Query: 947 RNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPE 1006
RNVVAECLGK+ LI+P L+P LK A+K++I + P+ ID ++
Sbjct: 948 RNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNC 1007
Query: 1007 ISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVD 1066
I FL ++D D +VRR A++ ++ AHNKP+LI+ Y++T V+KELIR V+
Sbjct: 1008 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVE 1067
Query: 1067 LGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLI 1126
+GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++ F+ +++ GL+DHYD+KM L+
Sbjct: 1068 MGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLM 1126
Query: 1127 LSKLADKCPSAVL 1139
L +L+ CPSAVL
Sbjct: 1127 LVRLSTLCPSAVL 1139
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/1153 (42%), Positives = 729/1153 (63%), Gaps = 32/1153 (2%)
Query: 2 ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD 61
A+ ++ +LEK+T DKDFR+MAT+DL+ EL K+S K D D E K+ ++++ L+D G+
Sbjct: 27 ASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 86
Query: 62 VSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEV----TT 117
V LAVKCL PLV KV E +V + D LC +L+ K+Q RDI+SI LKT+I E+ +
Sbjct: 87 VQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 146
Query: 118 SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLP 177
S+LA ++ +T +LT I K + ++ E LDI+ D+L + G L+ N H +L+ LLP
Sbjct: 147 SALAANVCKKITGRLTSAIA-KQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP 205
Query: 178 QLSANQASVRKKSVSCIXXXXXXXXXXXXXXXTIEVVRNLRSKGAKPEMI---RTNIQMV 234
QL++ + +VRK+++ + ++++ +L S+ +K + + RT IQ +
Sbjct: 206 QLTSPRLAVRKRTIIALGHLVMSCGNIVF----VDLIEHLLSELSKNDSMSTTRTYIQCI 261
Query: 235 GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD 294
A+SR G+R G +L +P+++ +C +D+ELREY +QA ESF+ RCP+++ +
Sbjct: 262 AAISRQAGHRIGEYLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRCPKEVYPHVS 318
Query: 295 EILHLTLEYLSYDPNFT---DNMXXXXXXXXXXXXXXXXXXXXXTDDEDASWKVRRAAAK 351
I+++ L+YL+YDPN+ ++ +DD+D SWKVRRAAAK
Sbjct: 319 TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK 378
Query: 352 CLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDN 411
CL A++ +R EML + Y+ P LI RFKEREENVK DVF+ ++ L++QT V D
Sbjct: 379 CLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDP 438
Query: 412 NEL----NPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGS 467
+ + P +L+ +V IVK++++Q++EKS+KT+ F++L ELV VLP L HI
Sbjct: 439 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 498
Query: 468 LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKV 527
L+PGI SLNDKSS+SNLKI+AL+ ++L +HSP VFHP+++AL PV+A VG+ +YK+
Sbjct: 499 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 558
Query: 528 TAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGL 587
T+EAL V +LV+V+RP + FD PY++ ++ + RL D DQEVKE AISCMG
Sbjct: 559 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 618
Query: 588 VISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAEL 647
+I GDNLG++LP L + ++R+ NEITRLT VKA +IA SPL IDL VL + L
Sbjct: 619 IICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPIL 678
Query: 648 TAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALEL 707
+FLRK RAL+ TL ++ L+ Y D + A+ + ++ EL LIS+SD+H++ +A+
Sbjct: 679 ASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISF 738
Query: 708 CCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANXXXXX 767
TL + P+ + +L + + L++S LLQG AL A+ FF ALV +
Sbjct: 739 LTTL---AKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY 795
Query: 768 XXXXXXXXAKPSPQSGGVA-KQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSST 826
QS + KQ+ YSIA+CVA L A + + + + D+ K+ ST
Sbjct: 796 MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDV-KNSRST 854
Query: 827 NSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSK 886
+S + LALL LGE+G DLS +++VI+E+F SP EE+KSAASYALG+I+VGNL +
Sbjct: 855 DSIRL-LALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPE 913
Query: 887 FLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGV 946
+LPF+L +I +Q K+QYLLLHSLKE+I SV + VE I LL HCE EEG
Sbjct: 914 YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLK---PYVENIWALLLKHCECAEEGT 970
Query: 947 RNVVAECLGKIALIEPAKLVPALKXXXXXXXXXXXXXXXIAIKYSIVERPEKIDEIIFPE 1006
RNVV ECLGK+ LI+P L+P LK A+K++I + P+ ID ++
Sbjct: 971 RNVVVECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNC 1030
Query: 1007 ISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVD 1066
I FL ++D D +VRR A++ ++ AHNKP+LI+ Y++T V+KELIR V+
Sbjct: 1031 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVE 1090
Query: 1067 LGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLI 1126
+GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++ F+ +++ GL+DHYD+KM L+
Sbjct: 1091 MGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLM 1149
Query: 1127 LSKLADKCPSAVL 1139
L +L+ CPSAVL
Sbjct: 1150 LVRLSTLCPSAVL 1162
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 1075 DDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKS---GLEDHYDVKMPCHLILSKLA 1131
D L++++ C+ + DS + ++P + +++ GL+DH V C + L
Sbjct: 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLV 481
Query: 1132 DKCPSAVLADFLHLMYTIITFSVGLIGGPSPKDYQF 1167
++ A + + ++ GLIG + D +F
Sbjct: 482 EQLAEATPSPIYNFYPALVD---GLIGAANRIDNEF 514
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 505 FHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAI 564
F Y++ S +L A+ + V+ A+ ++ L DF+ Y + N +
Sbjct: 633 FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-------DFRRYSDAMMNVL 685
Query: 565 MSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG 612
++N + +E+K +S G + S N+GA+ +P L D M
Sbjct: 686 AQMISNPNARRELKPAVLSVFGDIAS----NIGADF---IPYLNDIMA 726
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 1075 DDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKS---GLEDHYDVKMPCHLILSKLA 1131
D L++++ C+ + DS + ++P + +++ GL+DH V C + L
Sbjct: 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLV 481
Query: 1132 DKCPSAVLADFLHLMYTIITFSVGLIGGPSPKDYQF 1167
++ A + + ++ GLIG + D +F
Sbjct: 482 EQLAEATPSPIYNFYPALVD---GLIGAANRIDNEF 514
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 505 FHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAI 564
F Y++ S +L A+ + V+ A+ ++ L DF+ Y + N +
Sbjct: 633 FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-------DFRRYSDAMMNVL 685
Query: 565 MSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG 612
++N + +E+K +S G + S N+GA+ +P L D M
Sbjct: 686 AQMISNPNARRELKPAVLSVFGDIAS----NIGADF---IPYLNDIMA 726
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 161 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 219
Query: 818 DILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAAS 873
++L +S+ Q AL +G I DL + I ++ + + SP E IK A
Sbjct: 220 ELLSHESTL---VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC 276
Query: 874 YALGNIAVGNLSKFLPFI 891
+ + NI GN + I
Sbjct: 277 WTISNITAGNTEQIQAVI 294
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 161 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 219
Query: 818 DILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAAS 873
++L +S+ Q AL +G I DL + I ++ + + SP E IK A
Sbjct: 220 ELLSHESTL---VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC 276
Query: 874 YALGNIAVGNLSKFLPFI 891
+ + NI GN + I
Sbjct: 277 WTISNITAGNTEQIQAVI 294
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 159 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 217
Query: 818 DILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAAS 873
++L +S+ Q AL +G I DL + I ++ + + SP E IK A
Sbjct: 218 ELLSHESTL---VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC 274
Query: 874 YALGNIAVGNLSKFLPFI 891
+ + NI GN + I
Sbjct: 275 WTISNITAGNTEQIQAVI 292
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 160 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 218
Query: 818 DILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAAS 873
++L +S+ Q AL +G I DL + I ++ + + SP E IK A
Sbjct: 219 ELLSHESTL---VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC 275
Query: 874 YALGNIAVGNLSKFLPFI 891
+ + NI GN + I
Sbjct: 276 WTISNITAGNTEQIQAVI 293
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 159 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 217
Query: 818 DILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAAS 873
++L +S+ Q AL +G I DL + I ++ + + SP E IK A
Sbjct: 218 ELLSHESTL---VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC 274
Query: 874 YALGNIAVGNLSKFLPFI 891
+ + NI GN + I
Sbjct: 275 WTISNITAGNTEQIQAVI 292
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 160 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 218
Query: 818 DILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAAS 873
++L +S+ Q AL +G I DL + I ++ + + SP E IK A
Sbjct: 219 ELLSHESTL---VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC 275
Query: 874 YALGNIAVGNLSKFLPFI 891
+ + NI GN + I
Sbjct: 276 WTISNITAGNTEQIQAVI 293
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 777 KPSPQSGGVAKQAMYSIAQ-------------CVAVLCLAAGDQKCSSTV------KMLT 817
KP P V QA+ ++A+ C A+ L+ G Q+ V K L
Sbjct: 247 KPQP-DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305
Query: 818 DILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQ----SPFEEIKSAAS 873
++L +S+ Q AL +G I DL + I ++ + + SP E IK A
Sbjct: 306 ELLSHESTL---VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC 362
Query: 874 YALGNIAVGNLSKFLPFI 891
+ + NI GN + I
Sbjct: 363 WTISNITAGNTEQIQAVI 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,528,192
Number of Sequences: 62578
Number of extensions: 1053481
Number of successful extensions: 2888
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2840
Number of HSP's gapped (non-prelim): 33
length of query: 1167
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1057
effective length of database: 8,089,757
effective search space: 8550873149
effective search space used: 8550873149
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)