Query 001062
Match_columns 1167
No_of_seqs 284 out of 1702
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 14:46:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1824 TATA-binding protein-i 100.0 4E-182 8E-187 1512.8 101.6 1145 1-1156 1-1157(1233)
2 KOG1824 TATA-binding protein-i 100.0 1.5E-49 3.2E-54 447.2 75.1 987 5-1094 48-1187(1233)
3 KOG2171 Karyopherin (importin) 100.0 1.3E-43 2.9E-48 414.8 70.0 824 142-1158 131-1027(1075)
4 KOG2023 Nuclear transport rece 100.0 7.1E-39 1.5E-43 349.3 43.9 676 4-762 13-778 (885)
5 KOG2171 Karyopherin (importin) 100.0 3.5E-30 7.7E-35 302.5 77.7 932 8-1158 83-1074(1075)
6 KOG1241 Karyopherin (importin) 100.0 2.5E-30 5.5E-35 288.3 55.9 671 18-760 51-812 (859)
7 KOG2023 Nuclear transport rece 100.0 4.5E-29 9.7E-34 273.1 44.4 603 5-675 129-821 (885)
8 KOG1241 Karyopherin (importin) 100.0 2.8E-27 6.1E-32 264.1 46.0 613 2-691 170-836 (859)
9 PF08623 TIP120: TATA-binding 100.0 4.5E-31 9.7E-36 252.1 8.5 119 1038-1157 1-119 (169)
10 COG5215 KAP95 Karyopherin (imp 99.9 8.3E-21 1.8E-25 205.0 58.4 595 16-676 53-716 (858)
11 COG5215 KAP95 Karyopherin (imp 99.9 2.7E-22 5.8E-27 216.4 46.5 594 6-690 178-833 (858)
12 KOG0213 Splicing factor 3b, su 99.9 3.5E-17 7.6E-22 181.9 59.1 668 35-797 353-1063(1172)
13 PLN03200 cellulose synthase-in 99.9 3.8E-15 8.3E-20 190.9 79.8 629 5-720 190-864 (2102)
14 PLN03200 cellulose synthase-in 99.9 7.6E-15 1.7E-19 188.2 76.7 784 4-882 13-861 (2102)
15 KOG0213 Splicing factor 3b, su 99.8 4.6E-15 1E-19 165.3 60.2 534 127-760 511-1066(1172)
16 KOG1242 Protein containing ada 99.8 3.4E-18 7.3E-23 191.0 34.4 464 37-623 87-558 (569)
17 COG5181 HSH155 U2 snRNP splice 99.8 1.8E-15 4E-20 165.3 44.5 655 6-805 170-876 (975)
18 KOG1242 Protein containing ada 99.8 7.3E-16 1.6E-20 172.5 38.4 521 56-665 27-558 (569)
19 COG5181 HSH155 U2 snRNP splice 99.8 1.2E-13 2.7E-18 151.2 49.8 727 178-1044 176-957 (975)
20 KOG0915 Uncharacterized conser 99.7 4.7E-14 1E-18 169.9 44.9 576 4-671 818-1469(1702)
21 KOG0915 Uncharacterized conser 99.6 6.4E-11 1.4E-15 143.5 46.9 557 42-678 814-1434(1702)
22 PF01602 Adaptin_N: Adaptin N 99.6 9.9E-12 2.2E-16 151.5 41.0 476 6-588 44-522 (526)
23 KOG0212 Uncharacterized conser 99.6 2.5E-11 5.5E-16 132.9 38.9 429 50-543 4-447 (675)
24 KOG0212 Uncharacterized conser 99.5 1.3E-10 2.8E-15 127.5 37.3 391 176-633 6-410 (675)
25 PF01602 Adaptin_N: Adaptin N 99.5 6.3E-10 1.4E-14 135.7 44.7 440 168-711 77-522 (526)
26 KOG1991 Nuclear transport rece 99.5 2.2E-07 4.7E-12 109.8 61.7 562 1-624 1-795 (1010)
27 KOG1248 Uncharacterized conser 99.5 2.3E-07 5.1E-12 111.6 62.2 705 6-760 140-899 (1176)
28 PTZ00429 beta-adaptin; Provisi 99.4 5.9E-09 1.3E-13 126.1 48.9 469 4-586 68-542 (746)
29 KOG1943 Beta-tubulin folding c 99.4 2.1E-07 4.5E-12 110.7 59.0 597 16-672 137-882 (1133)
30 KOG1248 Uncharacterized conser 99.4 7.6E-08 1.6E-12 115.7 54.6 627 12-714 232-899 (1176)
31 PTZ00429 beta-adaptin; Provisi 99.4 6.2E-08 1.3E-12 117.4 51.0 284 370-713 256-546 (746)
32 KOG0211 Protein phosphatase 2A 99.3 6.5E-09 1.4E-13 124.0 38.7 560 63-712 99-663 (759)
33 KOG1991 Nuclear transport rece 99.3 3E-06 6.6E-11 100.4 59.0 509 52-649 10-592 (1010)
34 KOG1992 Nuclear export recepto 99.3 3.8E-06 8.3E-11 97.2 57.5 587 16-714 51-710 (960)
35 PRK13800 putative oxidoreducta 99.3 3.8E-10 8.3E-15 143.4 25.8 274 47-451 622-895 (897)
36 KOG2274 Predicted importin 9 [ 99.3 7.9E-06 1.7E-10 95.7 56.2 614 50-764 8-651 (1005)
37 PRK13800 putative oxidoreducta 99.2 1.6E-09 3.5E-14 137.7 24.5 274 5-395 622-895 (897)
38 KOG2274 Predicted importin 9 [ 99.2 4.6E-05 9.9E-10 89.6 58.4 234 425-672 448-690 (1005)
39 KOG0211 Protein phosphatase 2A 99.1 1.3E-07 2.8E-12 113.2 35.9 543 42-673 117-666 (759)
40 KOG1020 Sister chromatid cohes 99.1 6E-05 1.3E-09 93.1 57.5 568 3-630 580-1255(1692)
41 KOG1993 Nuclear transport rece 99.1 2.6E-05 5.5E-10 90.1 50.7 206 442-659 503-716 (978)
42 PRK09687 putative lyase; Provi 99.1 1.2E-08 2.6E-13 110.6 22.5 255 170-537 23-279 (280)
43 PRK09687 putative lyase; Provi 99.1 1.5E-08 3.3E-13 109.7 21.7 240 3-305 22-262 (280)
44 KOG1943 Beta-tubulin folding c 99.1 8.7E-06 1.9E-10 97.3 45.5 510 42-629 337-881 (1133)
45 PF10508 Proteasom_PSMB: Prote 99.0 5.9E-07 1.3E-11 106.6 36.3 390 3-498 2-420 (503)
46 KOG0166 Karyopherin (importin) 99.0 5.2E-08 1.1E-12 109.8 24.4 355 5-400 67-437 (514)
47 KOG1992 Nuclear export recepto 99.0 0.00018 4E-09 83.8 57.0 572 49-714 9-669 (960)
48 PF12460 MMS19_C: RNAPII trans 99.0 8.6E-07 1.9E-11 103.1 34.7 367 49-474 2-413 (415)
49 PF10508 Proteasom_PSMB: Prote 98.9 1.9E-06 4.1E-11 102.3 34.7 348 9-401 43-422 (503)
50 KOG2021 Nuclear mRNA export fa 98.9 0.00018 4E-09 82.8 47.2 631 17-690 52-778 (980)
51 KOG1060 Vesicle coat complex A 98.9 2.3E-05 5.1E-10 90.3 38.3 487 50-672 39-534 (968)
52 KOG0166 Karyopherin (importin) 98.9 1.1E-06 2.3E-11 99.4 27.0 356 87-498 69-436 (514)
53 KOG1020 Sister chromatid cohes 98.8 0.0012 2.7E-08 82.1 68.8 646 419-1155 809-1525(1692)
54 KOG1060 Vesicle coat complex A 98.8 1.6E-05 3.4E-10 91.7 35.5 431 224-775 50-512 (968)
55 KOG1062 Vesicle coat complex A 98.8 0.00011 2.4E-09 85.5 39.6 420 45-594 106-548 (866)
56 PF12348 CLASP_N: CLASP N term 98.7 8.9E-07 1.9E-11 94.6 18.5 183 340-544 18-210 (228)
57 COG5240 SEC21 Vesicle coat com 98.6 0.0019 4.2E-08 72.2 44.3 472 161-710 55-552 (898)
58 PF12348 CLASP_N: CLASP N term 98.6 8.6E-07 1.9E-11 94.7 17.1 187 94-289 17-212 (228)
59 KOG1059 Vesicle coat complex A 98.6 0.0002 4.4E-09 82.1 35.9 233 638-895 140-380 (877)
60 PF12460 MMS19_C: RNAPII trans 98.6 7.5E-06 1.6E-10 95.3 25.5 253 39-303 128-414 (415)
61 KOG1062 Vesicle coat complex A 98.6 0.0021 4.5E-08 75.3 42.8 415 125-628 105-543 (866)
62 KOG0168 Putative ubiquitin fus 98.6 3.5E-05 7.7E-10 89.6 28.6 429 4-466 167-640 (1051)
63 COG5656 SXM1 Importin, protein 98.6 0.0042 9.2E-08 71.9 45.3 149 144-301 431-586 (970)
64 KOG1240 Protein kinase contain 98.4 6.3E-05 1.4E-09 90.9 25.1 301 206-594 423-729 (1431)
65 KOG1061 Vesicle coat complex A 98.4 0.00027 5.9E-09 82.6 29.6 200 4-217 86-289 (734)
66 KOG4535 HEAT and armadillo rep 98.3 0.0026 5.7E-08 69.8 32.2 188 484-671 406-603 (728)
67 KOG1240 Protein kinase contain 98.3 6.9E-05 1.5E-09 90.5 21.7 254 19-286 438-728 (1431)
68 KOG4535 HEAT and armadillo rep 98.2 0.0067 1.4E-07 66.7 32.7 118 525-652 498-623 (728)
69 KOG1967 DNA repair/transcripti 98.2 0.033 7.2E-07 66.7 39.8 159 366-538 863-1022(1030)
70 KOG1820 Microtubule-associated 98.2 0.00024 5.2E-09 86.4 23.3 368 170-595 63-448 (815)
71 KOG4224 Armadillo repeat prote 98.2 0.0002 4.2E-09 75.6 19.4 264 7-286 88-366 (550)
72 KOG1967 DNA repair/transcripti 98.1 0.045 9.8E-07 65.6 64.3 133 927-1059 864-1008(1030)
73 PF12755 Vac14_Fab1_bd: Vacuol 98.1 1.4E-05 3.1E-10 70.6 9.3 77 226-305 2-78 (97)
74 KOG1059 Vesicle coat complex A 98.1 0.038 8.3E-07 64.2 45.9 203 344-591 159-366 (877)
75 KOG1993 Nuclear transport rece 98.1 0.011 2.4E-07 69.3 33.5 363 120-539 424-811 (978)
76 KOG2956 CLIP-associating prote 98.0 0.0004 8.7E-09 76.3 19.8 209 84-304 286-499 (516)
77 KOG4224 Armadillo repeat prote 98.0 0.00027 5.8E-09 74.6 16.9 269 6-285 210-495 (550)
78 KOG1820 Microtubule-associated 98.0 0.00033 7.2E-09 85.2 20.4 183 339-544 263-447 (815)
79 PF05004 IFRD: Interferon-rela 98.0 0.00049 1.1E-08 75.9 20.1 186 483-674 57-260 (309)
80 KOG0891 DNA-dependent protein 98.0 0.04 8.7E-07 74.6 40.3 532 15-628 144-762 (2341)
81 PF08623 TIP120: TATA-binding 98.0 1.6E-06 3.5E-11 84.0 0.1 125 963-1094 8-148 (169)
82 COG5064 SRP1 Karyopherin (impo 98.0 0.00055 1.2E-08 71.6 18.1 215 61-284 53-273 (526)
83 KOG1061 Vesicle coat complex A 97.9 0.031 6.8E-07 66.0 34.0 488 106-713 32-528 (734)
84 PF12755 Vac14_Fab1_bd: Vacuol 97.9 0.00017 3.7E-09 63.8 11.9 88 345-447 2-89 (97)
85 KOG2032 Uncharacterized conser 97.9 0.015 3.4E-07 64.8 29.1 145 555-701 254-404 (533)
86 KOG0414 Chromosome condensatio 97.9 0.16 3.4E-06 62.9 69.6 156 852-1053 919-1082(1251)
87 KOG0168 Putative ubiquitin fus 97.9 0.021 4.6E-07 67.4 31.0 255 171-477 168-436 (1051)
88 KOG2956 CLIP-associating prote 97.9 0.00097 2.1E-08 73.4 19.1 192 4-206 286-484 (516)
89 COG5096 Vesicle coat complex, 97.9 0.024 5.2E-07 68.3 32.2 104 4-114 92-196 (757)
90 KOG2022 Nuclear transport rece 97.9 0.14 2.9E-06 61.4 52.9 355 339-714 477-868 (982)
91 KOG0946 ER-Golgi vesicle-tethe 97.8 0.13 2.9E-06 60.6 40.1 345 170-591 22-400 (970)
92 PF12717 Cnd1: non-SMC mitotic 97.8 0.00013 2.8E-09 74.0 11.0 134 944-1093 2-139 (178)
93 PF03378 CAS_CSE1: CAS/CSE pro 97.8 0.008 1.7E-07 69.4 26.6 255 243-593 18-275 (435)
94 KOG2259 Uncharacterized conser 97.8 0.0026 5.6E-08 72.7 21.3 289 167-501 195-514 (823)
95 KOG2032 Uncharacterized conser 97.8 0.076 1.7E-06 59.5 31.4 123 166-292 254-380 (533)
96 PF13513 HEAT_EZ: HEAT-like re 97.7 4.8E-05 1E-09 60.1 4.9 55 343-397 1-55 (55)
97 KOG1822 Uncharacterized conser 97.7 0.17 3.6E-06 65.6 37.5 142 24-167 851-997 (2067)
98 KOG4413 26S proteasome regulat 97.7 0.055 1.2E-06 56.9 27.6 305 185-591 55-378 (524)
99 PLN03076 ARF guanine nucleotid 97.7 0.39 8.5E-06 64.5 42.1 275 380-693 1193-1511(1780)
100 PF12717 Cnd1: non-SMC mitotic 97.6 0.0017 3.8E-08 65.7 16.0 111 343-475 2-113 (178)
101 KOG4653 Uncharacterized conser 97.6 0.0084 1.8E-07 70.9 22.9 214 46-274 727-955 (982)
102 KOG1058 Vesicle coat complex C 97.6 0.067 1.4E-06 62.6 29.2 313 425-776 55-442 (948)
103 KOG0946 ER-Golgi vesicle-tethe 97.6 0.044 9.5E-07 64.4 27.9 211 81-299 19-262 (970)
104 PF05004 IFRD: Interferon-rela 97.6 0.0095 2.1E-07 65.8 21.8 195 377-593 50-260 (309)
105 COG5064 SRP1 Karyopherin (impo 97.6 0.00032 6.9E-09 73.4 9.3 231 47-285 158-400 (526)
106 COG5657 CSE1 CAS/CSE protein i 97.6 0.38 8.2E-06 58.1 40.3 116 16-133 50-172 (947)
107 PF03378 CAS_CSE1: CAS/CSE pro 97.5 0.15 3.3E-06 59.0 31.7 216 81-305 23-252 (435)
108 COG5656 SXM1 Importin, protein 97.5 0.35 7.6E-06 56.9 57.7 193 450-651 563-779 (970)
109 KOG1525 Sister chromatid cohes 97.5 0.072 1.6E-06 68.3 30.7 344 39-455 41-405 (1266)
110 PF14500 MMS19_N: Dos2-interac 97.5 0.014 2.9E-07 62.7 21.0 236 51-301 4-256 (262)
111 PF14500 MMS19_N: Dos2-interac 97.5 0.077 1.7E-06 57.0 26.3 239 142-432 12-256 (262)
112 COG1413 FOG: HEAT repeat [Ener 97.5 0.038 8.3E-07 62.8 25.7 186 5-237 44-240 (335)
113 KOG2259 Uncharacterized conser 97.4 0.012 2.7E-07 67.4 20.4 302 431-774 203-526 (823)
114 KOG4653 Uncharacterized conser 97.4 0.034 7.4E-07 66.0 24.1 191 6-205 729-924 (982)
115 PF08506 Cse1: Cse1; InterPro 97.4 0.058 1.3E-06 61.1 25.8 254 285-585 72-370 (370)
116 PF05804 KAP: Kinesin-associat 97.4 0.7 1.5E-05 56.5 38.9 367 189-672 268-650 (708)
117 PLN03076 ARF guanine nucleotid 97.3 0.058 1.3E-06 72.0 27.6 288 13-305 1146-1512(1780)
118 KOG1078 Vesicle coat complex C 97.3 0.67 1.5E-05 55.1 37.9 237 429-708 103-343 (865)
119 KOG0891 DNA-dependent protein 97.3 0.56 1.2E-05 64.2 36.5 535 14-598 491-1049(2341)
120 KOG1078 Vesicle coat complex C 97.3 0.69 1.5E-05 55.0 34.8 247 426-713 282-532 (865)
121 KOG2021 Nuclear mRNA export fa 97.3 0.66 1.4E-05 54.8 49.2 479 42-610 185-784 (980)
122 PF12231 Rif1_N: Rap1-interact 97.3 0.17 3.6E-06 58.0 28.0 262 13-283 2-303 (372)
123 PF01603 B56: Protein phosphat 97.3 0.079 1.7E-06 61.3 25.5 304 18-365 40-377 (409)
124 KOG0392 SNF2 family DNA-depend 97.3 1 2.3E-05 56.3 43.5 151 6-160 79-239 (1549)
125 KOG0414 Chromosome condensatio 97.3 1 2.2E-05 56.2 61.8 662 420-1149 302-1080(1251)
126 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00029 6.2E-09 55.6 3.6 54 225-281 2-55 (55)
127 KOG0413 Uncharacterized conser 97.2 0.37 8E-06 58.1 29.7 128 525-672 945-1074(1529)
128 KOG2062 26S proteasome regulat 97.2 0.76 1.6E-05 54.2 42.5 271 833-1153 398-674 (929)
129 PF05804 KAP: Kinesin-associat 97.2 0.09 1.9E-06 64.0 25.8 342 45-456 289-650 (708)
130 TIGR02270 conserved hypothetic 97.2 0.025 5.5E-07 64.7 20.2 152 5-199 55-207 (410)
131 PF02985 HEAT: HEAT repeat; I 97.2 0.00053 1.1E-08 46.5 3.8 30 47-76 1-30 (31)
132 KOG0392 SNF2 family DNA-depend 97.1 0.02 4.3E-07 70.5 18.9 235 45-286 647-928 (1549)
133 PF13251 DUF4042: Domain of un 97.1 0.0084 1.8E-07 59.8 13.4 161 344-541 1-175 (182)
134 PF13646 HEAT_2: HEAT repeats; 97.1 0.0037 8E-08 55.1 9.7 86 6-109 1-88 (88)
135 PF11865 DUF3385: Domain of un 97.1 0.0057 1.2E-07 60.3 11.7 113 167-283 7-157 (160)
136 PF08167 RIX1: rRNA processing 97.1 0.016 3.4E-07 57.7 14.9 141 124-304 22-164 (165)
137 PF05918 API5: Apoptosis inhib 97.0 0.1 2.2E-06 61.1 22.9 294 343-674 36-344 (556)
138 PF08506 Cse1: Cse1; InterPro 97.0 0.51 1.1E-05 53.6 27.6 210 185-444 111-364 (370)
139 cd00020 ARM Armadillo/beta-cat 97.0 0.0035 7.5E-08 59.0 9.0 107 171-282 8-119 (120)
140 cd00020 ARM Armadillo/beta-cat 97.0 0.0035 7.5E-08 59.0 8.9 110 427-539 8-119 (120)
141 PF05918 API5: Apoptosis inhib 96.9 0.12 2.6E-06 60.6 22.4 274 9-304 28-319 (556)
142 KOG1077 Vesicle coat complex A 96.9 1.4 3E-05 51.8 40.1 135 17-168 90-226 (938)
143 TIGR02270 conserved hypothetic 96.9 0.12 2.6E-06 59.4 21.7 208 372-670 88-295 (410)
144 KOG1058 Vesicle coat complex C 96.9 1.5 3.3E-05 51.9 36.9 334 171-593 100-466 (948)
145 PF13251 DUF4042: Domain of un 96.9 0.015 3.2E-07 58.1 12.4 152 270-457 2-176 (182)
146 PF13646 HEAT_2: HEAT repeats; 96.9 0.0044 9.5E-08 54.6 8.0 87 48-154 1-88 (88)
147 COG5240 SEC21 Vesicle coat com 96.8 1.4 2.9E-05 50.5 43.0 142 423-588 409-553 (898)
148 PF04118 Dopey_N: Dopey, N-ter 96.8 0.13 2.8E-06 56.3 20.3 222 462-698 49-285 (307)
149 cd00256 VATPase_H VATPase_H, r 96.8 1.5 3.2E-05 50.4 28.7 316 142-498 67-425 (429)
150 KOG4524 Uncharacterized conser 96.7 0.92 2E-05 55.4 27.4 114 149-262 568-685 (1014)
151 COG1413 FOG: HEAT repeat [Ener 96.7 0.055 1.2E-06 61.5 17.1 184 812-1033 44-241 (335)
152 COG5096 Vesicle coat complex, 96.6 2.7 5.8E-05 51.3 40.9 172 106-300 38-209 (757)
153 KOG2062 26S proteasome regulat 96.6 2.3 5E-05 50.4 46.2 232 810-1054 412-673 (929)
154 PF10274 ParcG: Parkin co-regu 96.6 0.031 6.7E-07 55.2 12.4 95 368-476 36-133 (183)
155 PF12719 Cnd3: Nuclear condens 96.6 0.82 1.8E-05 50.8 25.4 151 149-309 3-165 (298)
156 KOG2081 Nuclear transport regu 96.6 2.1 4.5E-05 49.5 36.2 352 22-399 35-457 (559)
157 PF04826 Arm_2: Armadillo-like 96.6 0.11 2.4E-06 55.3 17.4 190 3-204 11-210 (254)
158 KOG1243 Protein kinase [Genera 96.6 0.02 4.2E-07 67.0 12.2 257 6-285 256-517 (690)
159 PF10274 ParcG: Parkin co-regu 96.5 0.021 4.6E-07 56.4 10.6 95 465-565 36-130 (183)
160 KOG0567 HEAT repeat-containing 96.5 0.16 3.4E-06 52.5 16.8 241 5-282 4-279 (289)
161 KOG1077 Vesicle coat complex A 96.5 2.7 5.8E-05 49.6 39.8 456 168-697 109-608 (938)
162 PF08167 RIX1: rRNA processing 96.3 0.089 1.9E-06 52.4 14.1 137 422-568 21-164 (165)
163 KOG2933 Uncharacterized conser 96.3 0.038 8.2E-07 58.2 11.5 149 427-593 89-237 (334)
164 KOG2025 Chromosome condensatio 96.3 0.37 7.9E-06 56.5 20.0 105 2-108 83-188 (892)
165 PF12719 Cnd3: Nuclear condens 96.2 0.28 6E-06 54.5 18.5 111 556-672 23-144 (298)
166 PF08064 UME: UME (NUC010) dom 96.2 0.067 1.4E-06 48.7 11.0 77 223-304 28-105 (107)
167 PF04826 Arm_2: Armadillo-like 96.1 0.062 1.3E-06 57.3 12.2 146 130-284 15-164 (254)
168 KOG0413 Uncharacterized conser 96.0 5.7 0.00012 48.5 50.4 101 944-1047 983-1087(1529)
169 PF13001 Ecm29: Proteasome sta 95.9 4 8.8E-05 48.8 27.9 95 121-219 17-113 (501)
170 smart00802 UME Domain in UVSB 95.9 0.1 2.3E-06 47.0 11.0 76 224-304 29-105 (107)
171 PF11865 DUF3385: Domain of un 95.9 0.062 1.3E-06 53.0 10.3 76 421-498 80-157 (160)
172 KOG2160 Armadillo/beta-catenin 95.9 0.91 2E-05 49.6 19.7 184 14-201 93-284 (342)
173 PF08064 UME: UME (NUC010) dom 95.9 0.072 1.6E-06 48.5 9.9 94 166-260 7-105 (107)
174 PF12054 DUF3535: Domain of un 95.7 3.4 7.3E-05 48.3 25.1 295 60-363 101-429 (441)
175 KOG2973 Uncharacterized conser 95.6 3.1 6.7E-05 44.3 21.6 273 3-285 2-317 (353)
176 PF02985 HEAT: HEAT repeat; I 95.6 0.021 4.5E-07 38.6 3.9 30 171-200 1-30 (31)
177 KOG2149 Uncharacterized conser 95.6 0.18 3.9E-06 55.6 13.0 126 170-300 58-187 (393)
178 smart00802 UME Domain in UVSB 95.6 0.067 1.5E-06 48.2 8.2 96 555-650 7-104 (107)
179 KOG2137 Protein kinase [Signal 95.5 2.7 5.8E-05 50.1 23.2 255 6-287 241-500 (700)
180 cd00256 VATPase_H VATPase_H, r 95.5 6.3 0.00014 45.4 27.7 295 573-883 113-427 (429)
181 PF10363 DUF2435: Protein of u 95.5 0.12 2.6E-06 45.3 9.2 85 5-95 4-88 (92)
182 KOG0889 Histone acetyltransfer 95.4 21 0.00045 50.7 54.1 236 15-290 69-330 (3550)
183 PF08767 CRM1_C: CRM1 C termin 95.3 1.2 2.6E-05 49.8 19.1 191 385-589 42-243 (319)
184 KOG2549 Transcription initiati 95.3 0.83 1.8E-05 52.4 17.3 158 167-398 204-369 (576)
185 PF10521 DUF2454: Protein of u 95.3 0.4 8.7E-06 52.6 14.9 152 458-614 110-277 (282)
186 KOG0567 HEAT repeat-containing 95.2 1.3 2.8E-05 46.0 16.7 195 370-627 67-278 (289)
187 KOG2022 Nuclear transport rece 95.1 11 0.00024 46.0 64.7 176 424-611 460-641 (982)
188 KOG1243 Protein kinase [Genera 95.1 0.21 4.5E-06 58.9 12.2 245 435-714 263-516 (690)
189 PF10521 DUF2454: Protein of u 95.0 0.46 1E-05 52.1 14.5 142 42-183 115-278 (282)
190 KOG2160 Armadillo/beta-catenin 95.0 1.2 2.5E-05 48.7 16.9 179 99-284 98-283 (342)
191 PF12231 Rif1_N: Rap1-interact 94.9 9.1 0.0002 43.9 29.3 266 385-674 8-306 (372)
192 COG5116 RPN2 26S proteasome re 94.9 1.2 2.6E-05 50.7 17.1 182 851-1051 480-667 (926)
193 KOG1949 Uncharacterized conser 94.8 2.7 5.7E-05 49.5 19.7 182 11-200 181-372 (1005)
194 cd08050 TAF6 TATA Binding Prot 94.8 0.66 1.4E-05 52.3 15.2 145 427-588 179-338 (343)
195 PF11864 DUF3384: Domain of un 94.8 12 0.00026 44.5 39.9 432 143-668 4-463 (464)
196 KOG1517 Guanine nucleotide bin 94.8 0.28 6E-06 59.8 12.4 161 14-202 567-735 (1387)
197 PF05536 Neurochondrin: Neuroc 94.7 13 0.00029 44.8 38.6 232 5-244 6-266 (543)
198 COG5116 RPN2 26S proteasome re 94.5 0.46 1E-05 54.0 12.7 149 13-183 525-675 (926)
199 KOG2137 Protein kinase [Signal 94.5 2.2 4.8E-05 50.8 18.8 191 554-757 344-537 (700)
200 KOG2933 Uncharacterized conser 94.5 1.1 2.3E-05 47.8 14.5 163 342-528 101-265 (334)
201 KOG2549 Transcription initiati 94.4 1.5 3.2E-05 50.4 16.5 148 425-589 206-369 (576)
202 KOG2149 Uncharacterized conser 94.4 0.47 1E-05 52.4 12.2 114 429-544 61-174 (393)
203 PF08767 CRM1_C: CRM1 C termin 94.4 0.36 7.7E-06 53.9 11.8 168 344-525 42-228 (319)
204 PF13001 Ecm29: Proteasome sta 94.2 0.51 1.1E-05 56.4 13.5 116 167-286 316-446 (501)
205 KOG0889 Histone acetyltransfer 94.2 41 0.00088 48.1 57.6 137 390-539 651-795 (3550)
206 KOG2081 Nuclear transport regu 94.1 15 0.00032 42.9 37.4 108 504-628 333-456 (559)
207 COG5218 YCG1 Chromosome conden 94.1 2.4 5.1E-05 48.8 17.1 125 106-234 69-194 (885)
208 KOG1949 Uncharacterized conser 94.0 0.39 8.3E-06 56.0 10.8 149 514-669 177-329 (1005)
209 PF12074 DUF3554: Domain of un 93.8 10 0.00022 43.0 22.6 100 111-218 10-113 (339)
210 KOG4413 26S proteasome regulat 93.8 11 0.00024 40.3 28.1 194 56-262 53-266 (524)
211 cd08050 TAF6 TATA Binding Prot 93.8 1.3 2.8E-05 49.9 14.8 139 209-382 179-321 (343)
212 KOG1517 Guanine nucleotide bin 93.7 2.6 5.6E-05 52.0 17.3 165 425-597 511-678 (1387)
213 PF01603 B56: Protein phosphat 93.6 14 0.0003 43.0 23.1 235 340-589 101-369 (409)
214 smart00638 LPD_N Lipoprotein N 93.5 9.2 0.0002 47.1 23.1 113 169-291 392-517 (574)
215 KOG2140 Uncharacterized conser 93.3 16 0.00036 41.7 21.5 36 120-157 231-266 (739)
216 PF14664 RICTOR_N: Rapamycin-i 93.2 3.8 8.3E-05 46.6 17.4 217 855-1094 28-270 (371)
217 COG5095 TAF6 Transcription ini 93.1 1.7 3.6E-05 45.6 12.8 182 70-262 183-383 (450)
218 KOG1293 Proteins containing ar 93.1 2 4.4E-05 50.4 14.7 145 10-158 383-533 (678)
219 PF11864 DUF3384: Domain of un 92.9 25 0.00055 41.7 36.9 266 422-712 24-329 (464)
220 PF12333 Ipi1_N: Rix1 complex 92.9 0.26 5.7E-06 44.4 6.0 62 242-306 2-64 (102)
221 KOG1837 Uncharacterized conser 92.8 5 0.00011 52.0 18.7 97 185-287 1519-1615(1621)
222 KOG2025 Chromosome condensatio 92.8 27 0.00058 41.8 32.0 56 343-398 99-154 (892)
223 PF12074 DUF3554: Domain of un 92.7 12 0.00025 42.6 20.6 236 18-262 1-258 (339)
224 PF12530 DUF3730: Protein of u 92.4 17 0.00036 38.6 20.1 170 372-578 2-177 (234)
225 KOG1525 Sister chromatid cohes 92.4 48 0.001 43.7 51.5 253 427-701 182-441 (1266)
226 COG5095 TAF6 Transcription ini 91.8 4.1 8.8E-05 42.9 13.7 136 224-397 212-357 (450)
227 PF08389 Xpo1: Exportin 1-like 91.1 0.78 1.7E-05 44.8 7.9 130 61-194 3-148 (148)
228 PF10363 DUF2435: Protein of u 91.1 2.3 5E-05 37.4 9.6 78 133-213 9-86 (92)
229 PF01347 Vitellogenin_N: Lipop 90.9 51 0.0011 41.0 25.8 125 224-394 449-584 (618)
230 KOG1848 Uncharacterized conser 90.7 38 0.00081 43.9 22.6 224 55-283 851-1132(1610)
231 KOG0803 Predicted E3 ubiquitin 90.6 13 0.00029 48.6 19.6 104 172-280 43-150 (1312)
232 PF05536 Neurochondrin: Neuroc 90.4 49 0.0011 40.0 38.6 212 86-305 7-241 (543)
233 PF08569 Mo25: Mo25-like; Int 89.9 38 0.00082 38.0 23.4 110 430-541 168-284 (335)
234 PF05327 RRN3: RNA polymerase 89.9 22 0.00047 43.4 20.1 136 161-302 64-212 (563)
235 PF11698 V-ATPase_H_C: V-ATPas 89.3 0.68 1.5E-05 42.4 5.0 61 15-75 55-115 (119)
236 PF03224 V-ATPase_H_N: V-ATPas 89.1 22 0.00048 39.7 18.2 119 142-260 70-200 (312)
237 KOG0803 Predicted E3 ubiquitin 88.6 49 0.0011 43.7 22.4 196 376-595 47-268 (1312)
238 PF03224 V-ATPase_H_N: V-ATPas 88.5 11 0.00023 42.3 15.2 220 6-232 60-306 (312)
239 PF01347 Vitellogenin_N: Lipop 88.4 28 0.00061 43.3 20.4 116 787-909 453-584 (618)
240 PF08389 Xpo1: Exportin 1-like 88.2 1.8 3.9E-05 42.2 7.8 117 185-305 3-136 (148)
241 KOG1926 Predicted regulator of 87.8 91 0.002 39.8 26.6 245 2-262 71-342 (1129)
242 PF14225 MOR2-PAG1_C: Cell mor 87.4 46 0.00099 35.9 19.8 147 125-287 109-258 (262)
243 PF04118 Dopey_N: Dopey, N-ter 87.0 40 0.00088 37.2 17.8 122 104-234 75-196 (307)
244 smart00638 LPD_N Lipoprotein N 86.6 46 0.001 40.9 20.6 92 811-909 442-540 (574)
245 KOG2213 Apoptosis inhibitor 5/ 86.5 21 0.00047 39.5 14.8 55 37-94 52-106 (460)
246 KOG3961 Uncharacterized conser 85.5 4.5 9.6E-05 40.6 8.4 94 206-304 112-208 (262)
247 KOG1837 Uncharacterized conser 85.0 5 0.00011 52.0 10.7 95 944-1038 1518-1615(1621)
248 KOG4524 Uncharacterized conser 84.8 1.2E+02 0.0026 38.2 42.0 93 510-608 802-895 (1014)
249 KOG1293 Proteins containing ar 84.6 98 0.0021 37.1 34.4 110 427-539 420-532 (678)
250 KOG1851 Uncharacterized conser 84.6 1.6E+02 0.0034 39.3 30.5 139 340-500 1538-1680(1710)
251 KOG2213 Apoptosis inhibitor 5/ 84.5 73 0.0016 35.5 19.5 32 169-200 60-91 (460)
252 PF10350 DUF2428: Putative dea 84.3 51 0.0011 35.5 17.0 171 342-523 60-252 (255)
253 PF07571 DUF1546: Protein of u 84.1 3.7 8E-05 36.2 6.7 58 340-397 17-76 (92)
254 COG5218 YCG1 Chromosome conden 83.9 97 0.0021 36.5 41.4 133 383-533 60-192 (885)
255 KOG1851 Uncharacterized conser 83.8 1.7E+02 0.0036 39.1 35.6 137 465-612 1524-1660(1710)
256 PF04388 Hamartin: Hamartin pr 83.5 12 0.00026 46.3 13.2 158 129-307 6-164 (668)
257 PF12830 Nipped-B_C: Sister ch 82.5 11 0.00023 38.5 10.4 80 963-1046 7-86 (187)
258 PF04931 DNA_pol_phi: DNA poly 81.7 5.8 0.00013 50.5 9.9 33 206-240 587-619 (784)
259 PF12530 DUF3730: Protein of u 81.6 77 0.0017 33.6 22.6 138 54-199 9-151 (234)
260 KOG2005 26S proteasome regulat 81.5 48 0.001 39.5 15.7 61 853-913 641-703 (878)
261 PF07571 DUF1546: Protein of u 81.1 6 0.00013 34.8 6.8 58 142-199 19-78 (92)
262 PF00514 Arm: Armadillo/beta-c 81.1 2.8 6E-05 30.4 4.0 30 45-74 11-40 (41)
263 PF12830 Nipped-B_C: Sister ch 81.0 7.8 0.00017 39.5 8.7 69 5-78 9-77 (187)
264 PF14664 RICTOR_N: Rapamycin-i 80.5 1.1E+02 0.0025 34.9 20.8 244 25-283 4-269 (371)
265 PF05997 Nop52: Nucleolar prot 80.3 80 0.0017 33.0 18.8 88 7-94 3-92 (217)
266 PF00514 Arm: Armadillo/beta-c 80.0 2.8 6E-05 30.4 3.7 29 852-880 12-40 (41)
267 KOG4500 Rho/Rac GTPase guanine 79.9 47 0.001 37.4 14.3 150 45-200 314-476 (604)
268 PF08161 NUC173: NUC173 domain 79.9 51 0.0011 33.8 14.1 157 144-305 15-181 (198)
269 PF14225 MOR2-PAG1_C: Cell mor 79.6 95 0.0021 33.5 19.9 126 167-305 108-238 (262)
270 PF14631 FancD2: Fanconi anaem 78.7 1.7E+02 0.0037 39.8 21.9 126 151-282 416-541 (1426)
271 KOG3961 Uncharacterized conser 78.5 4.9 0.00011 40.3 5.9 88 964-1051 114-204 (262)
272 PF11640 TAN: Telomere-length 78.5 38 0.00082 33.3 12.4 56 1-56 1-58 (155)
273 KOG0929 Guanine nucleotide exc 78.4 1.2E+02 0.0026 40.5 19.5 121 181-304 1185-1320(1514)
274 PF08569 Mo25: Mo25-like; Int 78.1 1.2E+02 0.0027 33.9 18.9 194 931-1142 77-295 (335)
275 PF12333 Ipi1_N: Rix1 complex 78.0 21 0.00044 32.2 9.4 62 418-479 3-65 (102)
276 PF09026 CENP-B_dimeris: Centr 77.9 4.7 0.0001 34.6 4.7 24 338-361 38-64 (101)
277 PF11698 V-ATPase_H_C: V-ATPas 77.4 11 0.00024 34.6 7.5 70 129-199 45-115 (119)
278 PF09324 DUF1981: Domain of un 76.9 11 0.00024 32.7 7.1 56 141-196 30-85 (86)
279 PF07539 DRIM: Down-regulated 76.6 14 0.00031 35.4 8.5 49 43-95 14-62 (141)
280 KOG2759 Vacuolar H+-ATPase V1 76.5 1.4E+02 0.0031 33.8 20.5 287 576-882 129-439 (442)
281 PF08146 BP28CT: BP28CT (NUC21 75.8 59 0.0013 31.8 12.7 78 185-262 36-119 (153)
282 PF12765 Cohesin_HEAT: HEAT re 74.3 4.2 9.2E-05 29.7 3.2 41 351-393 1-41 (42)
283 cd03561 VHS VHS domain family; 74.1 22 0.00047 33.9 9.1 78 510-594 36-116 (133)
284 PF08161 NUC173: NUC173 domain 73.6 1.1E+02 0.0025 31.3 15.6 173 270-497 16-198 (198)
285 KOG2122 Beta-catenin-binding p 71.7 1.6E+02 0.0034 39.0 17.3 162 850-1038 392-563 (2195)
286 cd03569 VHS_Hrs_Vps27p VHS dom 71.6 40 0.00087 32.5 10.2 82 211-298 44-127 (142)
287 cd03568 VHS_STAM VHS domain fa 71.5 45 0.00097 32.3 10.5 75 425-500 36-112 (144)
288 PF12612 TFCD_C: Tubulin foldi 71.3 67 0.0015 32.9 12.6 34 41-74 2-35 (193)
289 PF04388 Hamartin: Hamartin pr 70.6 84 0.0018 39.1 15.2 94 463-568 66-161 (668)
290 PF10350 DUF2428: Putative dea 70.5 96 0.0021 33.4 14.1 163 143-305 61-250 (255)
291 KOG1048 Neural adherens juncti 70.3 2.7E+02 0.0059 34.3 22.2 67 48-115 235-306 (717)
292 PF12397 U3snoRNP10: U3 small 70.2 22 0.00048 33.2 8.0 73 638-714 2-75 (121)
293 PF12765 Cohesin_HEAT: HEAT re 68.7 7.9 0.00017 28.3 3.6 40 153-194 3-42 (42)
294 KOG2973 Uncharacterized conser 68.7 1.8E+02 0.0039 31.6 18.8 66 1069-1136 249-319 (353)
295 PF00790 VHS: VHS domain; Int 68.3 40 0.00088 32.4 9.6 76 425-500 41-120 (140)
296 PF03810 IBN_N: Importin-beta 68.0 15 0.00032 30.9 5.9 49 7-55 17-75 (77)
297 PF12612 TFCD_C: Tubulin foldi 67.4 83 0.0018 32.2 12.3 151 423-589 4-157 (193)
298 PF03542 Tuberin: Tuberin; In 64.9 1.8E+02 0.0038 33.0 14.9 142 6-157 143-302 (356)
299 PF09324 DUF1981: Domain of un 64.8 41 0.00089 29.2 7.9 66 210-279 19-84 (86)
300 smart00288 VHS Domain present 64.6 69 0.0015 30.5 10.2 75 425-499 36-112 (133)
301 cd03568 VHS_STAM VHS domain fa 64.4 63 0.0014 31.3 9.9 76 369-459 36-114 (144)
302 PF12783 Sec7_N: Guanine nucle 64.4 58 0.0013 32.4 10.3 97 143-239 36-146 (168)
303 KOG1848 Uncharacterized conser 64.1 4.7E+02 0.01 34.8 26.5 225 12-240 850-1133(1610)
304 KOG1222 Kinesin associated pro 63.9 2.8E+02 0.006 32.0 24.4 73 209-284 591-664 (791)
305 smart00288 VHS Domain present 63.8 58 0.0013 31.0 9.6 77 511-594 37-115 (133)
306 PF12054 DUF3535: Domain of un 63.8 3E+02 0.0065 32.4 22.4 97 440-541 101-209 (441)
307 cd03572 ENTH_epsin_related ENT 62.6 1.3E+02 0.0029 28.0 11.2 76 423-498 35-119 (122)
308 PF10193 Telomere_reg-2: Telom 62.3 65 0.0014 29.7 9.2 36 267-302 18-56 (114)
309 PF11841 DUF3361: Domain of un 61.6 1.5E+02 0.0033 29.1 11.8 104 102-205 32-137 (160)
310 PF11935 DUF3453: Domain of un 61.4 2.3E+02 0.0049 30.2 18.2 199 54-302 1-211 (239)
311 KOG0929 Guanine nucleotide exc 60.6 3.4E+02 0.0074 36.6 18.0 121 572-693 1185-1320(1514)
312 cd03565 VHS_Tom1 VHS domain fa 60.6 1.1E+02 0.0024 29.5 10.8 78 210-288 40-120 (141)
313 PF03130 HEAT_PBS: PBS lyase H 60.4 9.2 0.0002 24.8 2.4 25 868-895 1-25 (27)
314 cd03569 VHS_Hrs_Vps27p VHS dom 60.3 91 0.002 30.1 10.2 75 425-500 40-116 (142)
315 KOG4500 Rho/Rac GTPase guanine 60.3 3.1E+02 0.0067 31.3 24.6 110 250-399 314-431 (604)
316 KOG3723 PH domain protein Melt 60.2 2.2E+02 0.0047 33.4 14.3 30 229-258 181-210 (851)
317 cd03572 ENTH_epsin_related ENT 60.1 62 0.0013 30.1 8.6 69 964-1032 38-117 (122)
318 PF04510 DUF577: Family of unk 59.9 76 0.0016 31.3 9.4 127 170-304 3-139 (174)
319 COG5101 CRM1 Importin beta-rel 59.0 3.9E+02 0.0084 32.1 46.5 180 18-201 61-263 (1053)
320 PF04931 DNA_pol_phi: DNA poly 58.5 5E+02 0.011 33.3 30.5 34 249-285 587-620 (784)
321 KOG2759 Vacuolar H+-ATPase V1 58.4 3.3E+02 0.0071 31.1 26.2 77 419-499 359-439 (442)
322 PF04510 DUF577: Family of unk 58.0 1.2E+02 0.0026 30.0 10.4 147 128-284 4-165 (174)
323 PF11701 UNC45-central: Myosin 58.0 52 0.0011 32.4 8.4 141 50-196 7-156 (157)
324 PF12397 U3snoRNP10: U3 small 56.8 68 0.0015 29.9 8.7 72 42-115 2-76 (121)
325 cd03561 VHS VHS domain family; 56.7 1.8E+02 0.0039 27.6 11.9 80 83-163 36-117 (133)
326 cd03567 VHS_GGA VHS domain fam 56.3 1E+02 0.0022 29.6 9.6 76 511-593 38-119 (139)
327 KOG1222 Kinesin associated pro 56.1 3.7E+02 0.0081 31.0 25.2 102 642-747 304-405 (791)
328 KOG2011 Sister chromatid cohes 55.6 5.8E+02 0.013 33.1 24.6 212 144-393 170-393 (1048)
329 cd03565 VHS_Tom1 VHS domain fa 54.4 1.4E+02 0.003 28.8 10.4 76 425-500 37-117 (141)
330 KOG2122 Beta-catenin-binding p 54.4 6.9E+02 0.015 33.6 27.2 223 342-590 364-601 (2195)
331 PF14911 MMS22L_C: S-phase gen 54.2 3.8E+02 0.0082 30.5 19.3 37 43-79 62-102 (373)
332 KOG2011 Sister chromatid cohes 53.3 6.3E+02 0.014 32.8 21.8 115 420-538 280-397 (1048)
333 KOG1877 Putative transmembrane 52.8 1.6E+02 0.0035 36.7 12.7 115 23-138 75-204 (819)
334 smart00567 EZ_HEAT E-Z type HE 52.8 17 0.00038 24.0 2.9 14 343-356 1-14 (30)
335 KOG4199 Uncharacterized conser 52.5 3.6E+02 0.0078 29.8 25.5 280 13-300 116-420 (461)
336 cd00197 VHS_ENTH_ANTH VHS, ENT 52.5 74 0.0016 29.3 8.1 74 206-282 35-114 (115)
337 PF10193 Telomere_reg-2: Telom 52.1 40 0.00087 31.1 6.0 82 210-295 5-91 (114)
338 PF11640 TAN: Telomere-length 51.6 77 0.0017 31.1 8.4 90 49-139 7-119 (155)
339 PF03542 Tuberin: Tuberin; In 51.4 4.1E+02 0.0089 30.1 17.0 154 141-305 154-329 (356)
340 smart00185 ARM Armadillo/beta- 51.3 22 0.00047 25.3 3.5 28 47-74 13-40 (41)
341 PF14911 MMS22L_C: S-phase gen 51.1 4.2E+02 0.0091 30.2 23.1 145 266-478 200-348 (373)
342 cd03567 VHS_GGA VHS domain fam 51.0 1.4E+02 0.0031 28.6 9.8 74 370-458 38-119 (139)
343 PF11701 UNC45-central: Myosin 50.7 1.2E+02 0.0025 29.9 9.5 130 977-1130 18-157 (157)
344 PF11841 DUF3361: Domain of un 48.6 56 0.0012 31.9 6.6 76 16-91 72-147 (160)
345 smart00185 ARM Armadillo/beta- 48.6 22 0.00048 25.2 3.2 29 852-880 12-40 (41)
346 COG5234 CIN1 Beta-tubulin fold 48.6 5.9E+02 0.013 31.1 26.0 157 167-359 243-417 (993)
347 KOG2199 Signal transducing ada 48.3 1.9E+02 0.0041 32.4 11.0 56 142-199 58-118 (462)
348 PF12783 Sec7_N: Guanine nucle 47.6 1.8E+02 0.0039 28.9 10.6 98 343-455 36-146 (168)
349 PF04147 Nop14: Nop14-like fam 46.8 3.1E+02 0.0068 35.3 14.8 59 419-477 465-526 (840)
350 KOG2999 Regulator of Rac1, req 46.1 3.1E+02 0.0068 32.3 12.7 154 45-204 82-247 (713)
351 KOG1877 Putative transmembrane 46.0 4.8E+02 0.01 32.8 15.2 125 381-521 68-203 (819)
352 cd00197 VHS_ENTH_ANTH VHS, ENT 45.9 1.4E+02 0.0031 27.4 8.9 42 424-465 35-76 (115)
353 KOG1822 Uncharacterized conser 45.9 1E+03 0.022 33.1 79.1 186 10-201 57-250 (2067)
354 cd03562 CID CID (CTD-Interacti 44.6 2.4E+02 0.0052 25.8 10.2 74 206-284 35-109 (114)
355 PF08713 DNA_alkylation: DNA a 44.5 31 0.00066 36.0 4.7 90 950-1046 107-196 (213)
356 PF11935 DUF3453: Domain of un 43.7 4.3E+02 0.0093 28.1 14.7 69 380-457 3-74 (239)
357 KOG2842 Interferon-related pro 42.4 5.5E+02 0.012 29.0 16.0 105 483-592 74-179 (427)
358 PF14631 FancD2: Fanconi anaem 37.7 5.2E+02 0.011 35.5 15.2 144 53-201 442-585 (1426)
359 PF14961 BROMI: Broad-minded p 37.6 3.8E+02 0.0082 35.1 12.8 73 5-79 162-235 (1296)
360 PF08713 DNA_alkylation: DNA a 36.0 4.3E+02 0.0093 27.2 11.9 29 49-77 54-82 (213)
361 smart00582 RPR domain present 35.8 3.6E+02 0.0077 24.9 10.4 102 175-284 5-108 (121)
362 PRK13689 hypothetical protein; 35.6 93 0.002 25.7 4.8 42 73-115 3-44 (75)
363 PF14668 RICTOR_V: Rapamycin-i 34.8 1.1E+02 0.0023 25.6 5.4 53 187-240 4-59 (73)
364 PF09462 Mus7: Mus7/MMS22 fami 34.1 9.9E+02 0.022 29.6 21.8 40 440-479 467-506 (614)
365 PF11919 DUF3437: Domain of un 34.0 92 0.002 27.3 5.1 56 344-400 4-59 (90)
366 PF12243 CTK3: CTD kinase subu 33.5 4.4E+02 0.0095 25.3 10.4 103 175-285 13-121 (139)
367 PF11919 DUF3437: Domain of un 32.9 79 0.0017 27.7 4.5 58 441-501 4-61 (90)
368 PHA02836 putative transmembran 32.5 55 0.0012 30.1 3.5 37 226-262 103-140 (153)
369 PF00790 VHS: VHS domain; Int 32.4 4.6E+02 0.0099 25.1 12.5 80 82-162 40-122 (140)
370 KOG1087 Cytosolic sorting prot 32.2 2.7E+02 0.0058 32.8 9.9 76 425-500 37-114 (470)
371 cd00872 PI3Ka_I Phosphoinositi 30.9 4.1E+02 0.0089 26.5 9.7 59 51-113 74-134 (171)
372 KOG1048 Neural adherens juncti 30.7 1.1E+03 0.025 29.2 19.4 128 607-739 526-665 (717)
373 PF08146 BP28CT: BP28CT (NUC21 29.8 5.4E+02 0.012 25.2 11.3 36 60-95 35-70 (153)
374 COG5110 RPN1 26S proteasome re 29.2 1E+03 0.022 28.2 20.3 53 641-700 449-501 (881)
375 cd06561 AlkD_like A new struct 29.1 1.9E+02 0.0041 29.5 7.6 91 950-1047 93-183 (197)
376 PF14663 RasGEF_N_2: Rapamycin 29.1 73 0.0016 29.4 3.9 32 43-74 5-36 (115)
377 KOG1789 Endocytosis protein RM 28.9 7.4E+02 0.016 32.0 12.8 66 8-74 1816-1882(2235)
378 KOG1789 Endocytosis protein RM 28.9 1.4E+03 0.03 29.7 23.4 120 1001-1140 1999-2124(2235)
379 cd03562 CID CID (CTD-Interacti 28.2 3.8E+02 0.0083 24.4 8.7 53 619-676 19-71 (114)
380 COG5369 Uncharacterized conser 28.1 1.4E+02 0.0029 35.0 6.4 111 45-157 430-544 (743)
381 PF07539 DRIM: Down-regulated 27.9 2.3E+02 0.005 27.3 7.2 83 167-260 14-97 (141)
382 PF14868 DUF4487: Domain of un 26.9 1.2E+03 0.026 28.3 28.7 77 464-541 476-553 (559)
383 KOG1832 HIV-1 Vpr-binding prot 26.7 33 0.00072 41.9 1.5 17 16-32 674-690 (1516)
384 PF09759 Atx10homo_assoc: Spin 25.6 1.5E+02 0.0033 26.6 5.1 58 227-287 3-63 (102)
385 COG5101 CRM1 Importin beta-rel 24.7 1.3E+03 0.028 28.0 46.7 75 553-629 186-261 (1053)
386 KOG2256 Predicted protein invo 24.6 1.3E+03 0.029 28.1 24.1 93 464-564 369-473 (661)
387 PF12726 SEN1_N: SEN1 N termin 24.4 1.5E+03 0.033 28.6 38.4 232 46-280 77-343 (727)
388 PF12726 SEN1_N: SEN1 N termin 24.2 1.5E+03 0.033 28.6 37.0 135 169-310 119-271 (727)
389 KOG2085 Serine/threonine prote 24.2 1.1E+03 0.024 27.0 20.6 276 18-303 83-392 (457)
390 PF00613 PI3Ka: Phosphoinositi 23.4 7.1E+02 0.015 25.2 10.2 57 52-112 81-139 (184)
391 KOG2038 CAATT-binding transcri 23.3 8.1E+02 0.017 30.4 11.6 136 362-520 296-431 (988)
392 KOG1566 Conserved protein Mo25 23.2 1E+03 0.022 26.2 14.5 112 429-542 169-288 (342)
393 COG5219 Uncharacterized conser 23.2 1.7E+03 0.036 28.6 16.3 90 172-262 46-137 (1525)
394 PF05327 RRN3: RNA polymerase 22.8 1.4E+03 0.031 27.8 25.6 58 142-203 87-158 (563)
395 PRK07003 DNA polymerase III su 22.8 1.5E+03 0.033 28.8 14.2 27 193-219 311-337 (830)
396 PF02854 MIF4G: MIF4G domain; 21.9 8.3E+02 0.018 24.6 11.3 166 6-180 4-180 (209)
397 COG3082 Uncharacterized protei 21.8 2.9E+02 0.0064 22.3 5.2 40 75-115 5-44 (74)
398 KOG1087 Cytosolic sorting prot 21.7 3.2E+02 0.007 32.1 8.1 79 511-594 38-116 (470)
399 KOG3036 Protein involved in ce 21.6 9.3E+02 0.02 25.6 10.3 96 345-454 94-196 (293)
400 PF06371 Drf_GBD: Diaphanous G 21.0 2.8E+02 0.006 27.9 7.0 93 344-454 91-186 (187)
401 KOG2307 Low density lipoprotei 20.6 6.6E+02 0.014 29.8 9.9 58 418-479 488-545 (705)
402 KOG2199 Signal transducing ada 20.2 8.7E+02 0.019 27.5 10.4 37 425-461 44-80 (462)
No 1
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=3.9e-182 Score=1512.79 Aligned_cols=1145 Identities=52% Similarity=0.817 Sum_probs=1074.4
Q ss_pred CchHHHH-HHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh
Q 001062 1 MANLQMA-AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE 79 (1167)
Q Consensus 1 ~~~~~i~-~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~ 79 (1167)
|+++... .+++||.++|+|+||||+|||+++|+++.+++|++++++++++++++|+|.|+||||.|+||+|+++.++++
T Consensus 1 ma~~~~~i~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke 80 (1233)
T KOG1824|consen 1 MASMQVGINLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE 80 (1233)
T ss_pred CchhHHHHHHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH
Confidence 8888888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc---hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHH
Q 001062 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS---SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDV 156 (1167)
Q Consensus 80 ~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~---~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l 156 (1167)
++++.+++.||..+.+++.+.|++++++|++++.++++. .++..+++.+.|+|.+++...+....++.+++|+++++
T Consensus 81 ~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 81 DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999974 46788999999999999987765667999999999999
Q ss_pred HHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001062 157 LHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGA 236 (1167)
Q Consensus 157 ~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~ 236 (1167)
..++|..+.++|..++..++..+.+++..|||+|+.|+|.++.+++...+..+++++..++..+.. ....+++++++++
T Consensus 161 lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q-~~~~rt~Iq~l~~ 239 (1233)
T KOG1824|consen 161 LSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQ-MSATRTYIQCLAA 239 (1233)
T ss_pred HHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCc-hHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999977643 4667799999999
Q ss_pred HHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCC
Q 001062 237 LSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEE 316 (1167)
Q Consensus 237 l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~ 316 (1167)
+++..|++|+.|++.++|++.++++..+++|||+||+|+++++.|+.+||.++.||+++++++++++++|||||.++++|
T Consensus 240 i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~e 319 (1233)
T KOG1824|consen 240 ICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEE 319 (1233)
T ss_pred HHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCcc
Confidence 99999999999999999999999976666899999999999999999999999999999999999999999999988876
Q ss_pred CCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHH
Q 001062 317 DSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIE 396 (1167)
Q Consensus 317 d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~ 396 (1167)
|++.|..+|.+|||.+++|+||||+||||||||++|+.++|.++++.+..+|+.+.|.++.|||||||+|+.+++.++..
T Consensus 320 Ded~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ 399 (1233)
T KOG1824|consen 320 DEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIA 399 (1233)
T ss_pred chhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 65555545555556679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCccCC---CCCch---HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHH
Q 001062 397 LVRQTGNVTKGQIDN---NELNP---RWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIP 470 (1167)
Q Consensus 397 l~~~~~~~~~~~~~~---~~~~p---~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~ 470 (1167)
+++++++..+|-.+. ..+++ ...+.++.|.|++.+.+++++++.++|+.|+..|.+++.+.|+.+.+|++.++|
T Consensus 400 ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvp 479 (1233)
T KOG1824|consen 400 LLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVP 479 (1233)
T ss_pred HHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccch
Confidence 999998766665431 12333 367889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccC
Q 001062 471 GIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLG 550 (1167)
Q Consensus 471 ~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~ 550 (1167)
.|...|+|++..+..+++++.++..++.+|+|+.|+||++.+.|.+..+++|++|++..||+.++++++++++|...+++
T Consensus 480 gI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~ 559 (1233)
T KOG1824|consen 480 GIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSS 559 (1233)
T ss_pred hhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCcc
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999998765556
Q ss_pred CCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhcC
Q 001062 551 FDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAAS 630 (1167)
Q Consensus 551 ~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~ 630 (1167)
.++.||+.+++...++++..+|.|+|||++||.|+|.++.++|+.+...++.+++++++|++||.||..|++|+..|+.+
T Consensus 560 ~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S 639 (1233)
T KOG1824|consen 560 FDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMS 639 (1233)
T ss_pred CCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHH
Q 001062 631 PLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCT 710 (1167)
Q Consensus 631 ~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~ 710 (1167)
+...++.+.+..+++++..++++++|.+|.+++.++..++.+++..++...++.++.++.++++++|.++.+.++.++..
T Consensus 640 ~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 640 PLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTT 719 (1233)
T ss_pred cceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 98888999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HhhcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccCCCh--HHHHHHHhhcCCCCCCCcchhhh
Q 001062 711 LMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSF--DTLLDSLLSSAKPSPQSGGVAKQ 788 (1167)
Q Consensus 711 l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~~~~--~~ll~~L~~~~~~~~~~~~~~~~ 788 (1167)
+... .|.....+...+++.++.+++||++||.++.+++.++.+++....+.+ ..++..+..++.+ +...+++++
T Consensus 720 l~~~---~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~-~~~~~l~kq 795 (1233)
T KOG1824|consen 720 LAII---QPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYE-QVTDGLHKQ 795 (1233)
T ss_pred HHhc---ccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCccc-ccccchhHH
Confidence 9998 787777789999999999999999999999999999999998775544 4566667766633 345578899
Q ss_pred hhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCCCccchHHHHHHhcCCChhhH
Q 001062 789 AMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEI 868 (1167)
Q Consensus 789 a~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~l~~~l~~~~e~v 868 (1167)
++.++|+|+|.++...++ ....+..+++.++.+ +..+...+.++++++||+|++.++++.+++.++++++|++++|+|
T Consensus 796 a~~siA~cvA~Lt~~~~~-~s~s~a~kl~~~~~s-~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edv 873 (1233)
T KOG1824|consen 796 AYYSIAKCVAALTCACPQ-KSKSLATKLIQDLQS-PKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDV 873 (1233)
T ss_pred HHHHHHHHHHHHHHhccc-cchhHHHHHHHHHhC-CCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHH
Confidence 999999999999876654 556788889888876 356778899999999999999999888899999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhh
Q 001062 869 KSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRN 948 (1167)
Q Consensus 869 r~aaa~aLG~l~~~~~~~~lp~l~~~l~~~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~e~vr~ 948 (1167)
+.||++|||.+++||++.|+|+|++++.+++++||++|+||||++...+.+ .+.|+++.||+.||++|++.+|++|+
T Consensus 874 ksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd---~~~~~v~~IW~lL~k~cE~~eegtR~ 950 (1233)
T KOG1824|consen 874 KSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVD---GLKPYVEKIWALLFKHCECAEEGTRN 950 (1233)
T ss_pred HHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccc---hhhhhHHHHHHHHHHhcccchhhhHH
Confidence 999999999999999999999999999999999999999999999988775 67899999999999999999999999
Q ss_pred HHHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHH
Q 001062 949 VVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLA 1028 (1167)
Q Consensus 949 ~aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~ 1028 (1167)
++|||||+++.++|+.++|.|...+.++.+..|.++++++||.+++.....+++++++|+.|+..++|+|.+|||+|+.+
T Consensus 951 vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv 1030 (1233)
T KOG1824|consen 951 VVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVV 1030 (1233)
T ss_pred HHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHhcCchhhhchhhhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhhccccCCcccchHHH
Q 001062 1029 LSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPY 1108 (1167)
Q Consensus 1029 L~~~a~~~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~~~~~~~~~~~~~~~ 1108 (1167)
+++++||+|.++++.++++||.||.+|++|+++||+|+||||||+||||+++||+||||||||++.|++++|+.+|+ ++
T Consensus 1031 ~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl-~~ 1109 (1233)
T KOG1824|consen 1031 LNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFL-NH 1109 (1233)
T ss_pred HHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHH-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred HhcccCCcchhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhccc
Q 001062 1109 LKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGL 1156 (1167)
Q Consensus 1109 ~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~~~~~ 1156 (1167)
+..||.||+|||+++++||.+++..+|+.|.+++|+++++|+++...=
T Consensus 1110 ~~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k 1157 (1233)
T KOG1824|consen 1110 VEDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLK 1157 (1233)
T ss_pred HHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999987643
No 2
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.5e-49 Score=447.21 Aligned_cols=987 Identities=17% Similarity=0.227 Sum_probs=702.0
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHh-cC--CCChhHHHHHHHHHH-Hhhh----h
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQ-LD--DVAGDVSGLAVKCLA-PLVK----K 76 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~-L~--d~~~~Vr~~A~~~l~-~l~~----~ 76 (1167)
.+..+++.+.|..+++...|...|.-..++ +.+.....+++.|... ++ ++..++-..+.+..- .+.+ .
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsK----vke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~ 123 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSK----VKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSF 123 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhh----chHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccc
Confidence 345677777888888888888887655543 4567888899998876 43 455666666666533 2222 3
Q ss_pred cChhhHHHHHHHHHHHhcCCCc--chhcHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 001062 77 VSEPRVVEMTDKLCIKLLNGKD--QHRDIASIALKTIIAEVTTS--SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDI 152 (1167)
Q Consensus 77 ~~~~~~~~l~~~L~~~~~~~~~--~~r~~a~~aL~~~~~~~~~~--~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~ 152 (1167)
+....+..+.++|.+.+....+ ..+-.++--+.-+..+++.- .+-..+.+.++|++ ..+ ...||..++.+
T Consensus 124 la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql----~s~--R~aVrKkai~~ 197 (1233)
T KOG1824|consen 124 LAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQL----QSP--RLAVRKKAITA 197 (1233)
T ss_pred cccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcc----cCh--HHHHHHHHHHH
Confidence 4455567777777776653211 12222222233333333321 12233444444444 333 46799999999
Q ss_pred HHHHHHHhccchhHHHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHhhcC-CCChHHH
Q 001062 153 LCDVLHKFGNLMSNDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSK-GAKPEMI 227 (1167)
Q Consensus 153 L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~-~~~~~~r 227 (1167)
|+.++...+.. .+..+++.+++.|.++. +..-+..++|++.++...+.. ..+.++|.+.+..++. ..+++.|
T Consensus 198 l~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELr 274 (1233)
T KOG1824|consen 198 LGHLASSCNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELR 274 (1233)
T ss_pred HHHHHHhcCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHH
Confidence 99999888775 46778888898887653 366677899999999887765 4677888888776332 2346899
Q ss_pred HHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcC-----------------CCChh--------------HHHHHHH
Q 001062 228 RTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSAS-----------------ENDEE--------------LREYSLQ 276 (1167)
Q Consensus 228 ~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~-----------------e~~~e--------------~re~al~ 276 (1167)
+.++|+++.+.+.+|..+.||.|+++..+++++.++. ++|+| +|.+|..
T Consensus 275 E~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaK 354 (1233)
T KOG1824|consen 275 EYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAK 354 (1233)
T ss_pred HHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHH
Confidence 9999999999999999999999999999999997631 01111 8999999
Q ss_pred HHHHHHHhCCccccccHHHHHHHH-------------------HHhhccCCCCCCCCCCCCcccccccccchhhcCCCCC
Q 001062 277 ALESFLLRCPRDISSYCDEILHLT-------------------LEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTD 337 (1167)
Q Consensus 277 ~l~~l~~~~~~~~~~~l~~ii~~~-------------------~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~d 337 (1167)
+++.++..-++.+..+..++-+.+ ...++.-+++.+.-.| .|.|+ + .+-
T Consensus 355 cl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d-~d~~e-------~-~g~--- 422 (1233)
T KOG1824|consen 355 CLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLAD-NDAME-------Q-GGT--- 422 (1233)
T ss_pred HHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccC-chhhh-------c-cCC---
Confidence 999998765543332333332322 2223222222111000 00000 0 000
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchH
Q 001062 338 DEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1167)
Q Consensus 338 ddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~ 417 (1167)
....|-+++. ...++..+-+.++++.-..|..++..+.++++...
T Consensus 423 -~s~~~~L~~~-------------------~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp--------------- 467 (1233)
T KOG1824|consen 423 -PSDLSMLSDQ-------------------VPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLP--------------- 467 (1233)
T ss_pred -ccchHHHHhh-------------------hHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCc---------------
Confidence 0001221111 11122222223455656678889999999998865
Q ss_pred HHHHHHHHHHHHHHHHHhccCCh--hhHHHHHHHHHH-HHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHH
Q 001062 418 WLLKQEVSKIVKSINRQLREKSI--KTKVGAFSVLRE-LVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTR 494 (1167)
Q Consensus 418 ~~l~~~~~~l~~~l~~~L~~~~~--~~r~~~~~~l~~-l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~ 494 (1167)
+.+.++++.+++.+...|++++. ..+..++.++.. |+...|+.|.+|++.+.|.+..+..|+. ..+..+|+....
T Consensus 468 ~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f--yKisaEAL~v~~ 545 (1233)
T KOG1824|consen 468 GALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF--YKISAEALLVCQ 545 (1233)
T ss_pred chhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch--HhhhHHHHHHHH
Confidence 36788999999999999998864 466677766654 4555578899999999999999999874 367788888888
Q ss_pred HHhccCC---C---CchhhhhHhhHHHHHHHhc--CCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHH
Q 001062 495 LVLSSHS---P---PVFHPYIKALSSPVLAAVG--ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMS 566 (1167)
Q Consensus 495 ~l~~~~~---~---~~~~~~l~~ll~~l~~~l~--d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 566 (1167)
.+++... + -++.+|+.+++....+.+. |.+++|+..|+.++|+++..+++ .....++.+++.+++
T Consensus 546 ~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD-------~l~~eL~~~L~il~e 618 (1233)
T KOG1824|consen 546 QLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD-------FLGNELPRTLPILLE 618 (1233)
T ss_pred HHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh-------hhhhhhHHHHHHHHH
Confidence 7776432 2 3456899999999999885 77899999999999999998875 346678999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhc-CcccccchhhhHHHHHHhhcC--chhhHHHHHHHHHHhcCCCCCch-hhHHHH
Q 001062 567 RLTNQDQDQEVKECAISCMGLVISTF-GDNLGAELPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDL-TCVLEH 642 (1167)
Q Consensus 567 ~l~~~d~~~~vr~~Ai~alg~l~~~~-g~~l~~~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~~~~~~~~-~~~~~~ 642 (1167)
++++. -.|-.|+.|+..++... .-.+.+.+..+++.+...++. ...|..+..++..++... ...+ ...+..
T Consensus 619 Rl~nE----iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~-~~~~~~~~~e~ 693 (1233)
T KOG1824|consen 619 RLGNE----ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNY-SDSIPAELLEA 693 (1233)
T ss_pred HHhch----hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHH
Confidence 99753 24788888888876542 224567889999999887743 346778888888877432 1122 345678
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhh--HHHHHHHHHHHhhcccCCCc
Q 001062 643 VIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHM--TALALELCCTLMADKRSSPN 720 (1167)
Q Consensus 643 ~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~--~~~al~~l~~l~~~~~~~p~ 720 (1167)
++.++.+++..++..+-..|+.++..++...+..+. ....++++++..+++++-.+. ....+.++..++.++ .|+
T Consensus 694 vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~-~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~--~~~ 770 (1233)
T KOG1824|consen 694 VLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLL-KISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITK--EPD 770 (1233)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHH-HHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcC--CCC
Confidence 999999999999999999999999999987765432 234678888888888766553 445667777777762 222
Q ss_pred hhhhhhhchHHHHHHHhhhcc-------chhhhHHHHHHHHHHHHhccCCChH----HHHHHHhhcC-------------
Q 001062 721 VGLAVRNKVLPQALALIKSSL-------LQGQALVALQSFFAALVYSANTSFD----TLLDSLLSSA------------- 776 (1167)
Q Consensus 721 ~~~~~~~~~l~~l~~ll~~~~-------l~~~~l~~~~~~~~~l~~~~~~~~~----~ll~~L~~~~------------- 776 (1167)
.+ +..++..+..|. ++.++++++..|.+++....++... .++..+..+-
T Consensus 771 -----l~--y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~Lsl 843 (1233)
T KOG1824|consen 771 -----LD--YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSL 843 (1233)
T ss_pred -----cc--HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhh
Confidence 11 445566665553 3557778899999888876543222 2222222110
Q ss_pred C-------CCCCCc----------chhhhhhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHh
Q 001062 777 K-------PSPQSG----------GVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLG 839 (1167)
Q Consensus 777 ~-------~~~~~~----------~~~~~a~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lg 839 (1167)
+ .++.++ .-++....+.+.++|.+++++ .+..++.++.++.+ ++.++++.|+++.
T Consensus 844 GElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn----l~~yLpfil~qi~s----qpk~QyLLLhSlk 915 (1233)
T KOG1824|consen 844 GELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN----LPKYLPFILEQIES----QPKRQYLLLHSLK 915 (1233)
T ss_pred hhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc----hHhHHHHHHHHHhc----chHhHHHHHHHHH
Confidence 0 000000 001333345556777776643 34677777777765 6889999999999
Q ss_pred hhhccCCCC----CccchHHHHHHhcCCChhhHHHHHHHHHHhhhhcCcccchHHHHHHhhc-ccchhHHHHHHHHHHHh
Q 001062 840 EIGRRKDLS----SHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDN-QQKKQYLLLHSLKEVIV 914 (1167)
Q Consensus 840 ei~~~~~~~----~~~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~-~~~~~~~~l~aLkei~~ 914 (1167)
|+....+.+ ..+++|+.+++.+++..|+.|+..|+|||+++..+|+..+|.+-..+.+ .+..|.+++.|+|+.+.
T Consensus 916 evi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsis 995 (1233)
T KOG1824|consen 916 EVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSIS 995 (1233)
T ss_pred HHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeec
Confidence 998776544 2468999999999999999999999999999999999999999999988 46789999999999987
Q ss_pred hccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCcc-------cchHHHHHhhcCCChhhHHHHHHH
Q 001062 915 RQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPA-------KLVPALKVRTTSSAAFTRATVVIA 987 (1167)
Q Consensus 915 ~~~~~~~~~l~~~~~~i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~~~-------~~lp~l~~~~~~~~~~~R~~~~~~ 987 (1167)
.... .+.++..+.+..++....++|-+||++|..++.+.+++.|. .++|.+++.++-.++.+|.+-||+
T Consensus 996 d~p~----~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGP 1071 (1233)
T KOG1824|consen 996 DQPQ----PIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGP 1071 (1233)
T ss_pred CCCC----ccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccC
Confidence 6655 46788888888888888899999999999999999999984 678888888887889999999999
Q ss_pred HHHHhccCCh-------hhhhhhhHh-----HHHHHh----hccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHH
Q 001062 988 IKYSIVERPE-------KIDEIIFPE-----ISSFLM----LIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLL 1051 (1167)
Q Consensus 988 lk~~~~~~~~-------~~~~~l~~~-----i~~~l~----~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~~l~~llp~L 1051 (1167)
|||+++++.+ ...+.|..+ +..|+. +|.|. .++|...+.++.+++...|..+.+.++.++++|
T Consensus 1072 FKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpL 1150 (1233)
T KOG1824|consen 1072 FKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPL 1150 (1233)
T ss_pred ccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 9999999863 344566655 335665 45565 899999999999999999999999999999999
Q ss_pred HHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhh
Q 001062 1052 YDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDS 1094 (1167)
Q Consensus 1052 ~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~ 1094 (1167)
-+....| +.-+..|+..|+..|+.|+|.+.+++|+..
T Consensus 1151 r~t~~~k------~k~~svKqE~ek~~eLkRSAlRav~~L~~i 1187 (1233)
T KOG1824|consen 1151 RKTCTLK------VKANSVKQEFEKQDELKRSALRAVAALLTI 1187 (1233)
T ss_pred HHHhhcc------cccchHhHhHHHHHHHHHHHHHHHHHHhcc
Confidence 9887665 356789999999999999999999999654
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-43 Score=414.75 Aligned_cols=824 Identities=17% Similarity=0.198 Sum_probs=564.7
Q ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC--HH---HHHHHHHHHHHH
Q 001062 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS--DD---LLAKATIEVVRN 216 (1167)
Q Consensus 142 ~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~--~~---~~~~l~~~l~~~ 216 (1167)
++..|+.++-+|..+...+|..+.+|+..+++.+.+++++++..||-.|++|++.++.+.+ .+ .|..++|.++..
T Consensus 131 ~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~v 210 (1075)
T KOG2171|consen 131 NPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNV 210 (1075)
T ss_pred CcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHH
Confidence 3556777777788888888898999999999999999999887899999999999999995 22 478889988887
Q ss_pred hhcC--CCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccc---c
Q 001062 217 LRSK--GAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS---S 291 (1167)
Q Consensus 217 l~~~--~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~---~ 291 (1167)
++.. ..+.+....++.+|..++...|+-++||+..++.+.++.+.+. +-++.+|..|++++.+++++.|...+ +
T Consensus 211 l~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~-~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~ 289 (1075)
T KOG2171|consen 211 LQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNK-ELENSIRHLALEFLVSLSEYAPAMCKKLAL 289 (1075)
T ss_pred hHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHHHHHHhhHHHhhhchh
Confidence 7542 2233456788999999999999999999999999999998773 25678999999999999999876544 7
Q ss_pred cHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 001062 292 YCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEA 371 (1167)
Q Consensus 292 ~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i 371 (1167)
|..+++..+++.+. +.++| + ++.. +|+.++||.+ .--+.|.++++.+..+.|
T Consensus 290 ~~~~lv~~~l~~mt------e~~~D--~-----ew~~--~d~~ded~~~---~~~~~A~~~lDrlA~~L~---------- 341 (1075)
T KOG2171|consen 290 LGHTLVPVLLAMMT------EEEDD--D-----EWSN--EDDLDEDDEE---TPYRAAEQALDRLALHLG---------- 341 (1075)
T ss_pred hhccHHHHHHHhcC------Ccccc--h-----hhcc--cccccccccc---CcHHHHHHHHHHHHhcCC----------
Confidence 88899999998875 11111 0 0000 0000011111 112355555554443332
Q ss_pred hhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 001062 372 CPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLR 451 (1167)
Q Consensus 372 ~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~ 451 (1167)
+ +..+|.+++.+...+.+.+|+-|++++.+++
T Consensus 342 -------------------------------g-----------------~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als 373 (1075)
T KOG2171|consen 342 -------------------------------G-----------------KQVLPPLFEALEAMLQSTEWKERHAALLALS 373 (1075)
T ss_pred -------------------------------h-----------------hhehHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 2345888888889999999999999999999
Q ss_pred HHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCC-chHHHHH
Q 001062 452 ELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER-YYKVTAE 530 (1167)
Q Consensus 452 ~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~-~~~v~~~ 530 (1167)
.+++.+++.+..+++++++.+...|+|+ +++||..|+.+++.+.....|+.-+.|-+.+.|.+...+.+. +++|...
T Consensus 374 ~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp--hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ah 451 (1075)
T KOG2171|consen 374 VIAEGCSDVMIGNLPKILPIVLNGLNDP--HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAH 451 (1075)
T ss_pred HHHcccHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHH
Confidence 9999999999999999999999999998 679999999999999877665433345566777777777654 6699999
Q ss_pred HHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHh
Q 001062 531 ALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDR 610 (1167)
Q Consensus 531 al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~ 610 (1167)
|..++-++.+.... ..+.||++.+|...+..+..+ ..+.|++.+..++|.++...++.|.||++++||.|...
T Consensus 452 Aa~al~nf~E~~~~------~~l~pYLd~lm~~~l~~L~~~-~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~ 524 (1075)
T KOG2171|consen 452 AAAALVNFSEECDK------SILEPYLDGLMEKKLLLLLQS-SKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNF 524 (1075)
T ss_pred HHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Confidence 88888888775433 368999999999777777654 45899999999999999998888888888888888776
Q ss_pred hcCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCC-CChhhHHHHHHHH
Q 001062 611 MGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK-IGASAYEVIIVEL 689 (1167)
Q Consensus 611 L~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~-~~~~~~~~~l~~l 689 (1167)
|.|.. .++.+.+|..+++|++.++..+|+. +.+ ..+++++-+
T Consensus 525 L~n~~------------------------------------~~d~r~LrgktmEcisli~~AVGke~F~~-~a~eliqll 567 (1075)
T KOG2171|consen 525 LQNAD------------------------------------DKDLRELRGKTMECLSLIARAVGKEKFLP-LAEELIQLL 567 (1075)
T ss_pred HhCCC------------------------------------chhhHHHHhhHHHHHHHHHHHhhhhhhhH-hHHHHHHHH
Confidence 65521 2456778999999999999988853 221 123333333
Q ss_pred hhh---cCCCchhhHHHHHHHHHHHhhcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccCCChH
Q 001062 690 STL---ISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFD 766 (1167)
Q Consensus 690 ~~~---l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~~~~~ 766 (1167)
..+ ..+.|...+.+.+.+|+.+++. .+..+.++.+.++|.++...+..- ...+ + ++...+
T Consensus 568 ~~~~~~~~~~dd~~~sy~~~~warmc~i---lg~~F~p~L~~Vmppl~~ta~~~p--~~~~------~------d~~d~e 630 (1075)
T KOG2171|consen 568 LELQGSDQDDDDPLRSYMIAFWARMCRI---LGDDFAPFLPVVMPPLLKTARLDP--DVAL------S------DEEDEE 630 (1075)
T ss_pred HhhcccchhhccccHHHHHHHHHHHHHH---hchhhHhHHHHHhHHHHHhhccCC--cccC------c------Cchhhh
Confidence 333 3445667888999999999998 777788889999988876554221 1000 0 000000
Q ss_pred HHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCC
Q 001062 767 TLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKD 846 (1167)
Q Consensus 767 ~ll~~L~~~~~~~~~~~~~~~~a~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~ 846 (1167)
. .+ +-.+. ....+ .++..+ .+++ .---.+.-|+..|+++....+
T Consensus 631 -~---------~~-~~~~~---e~~~~----------~~~e~~---------~I~T---svl~eK~~A~~~Lv~~a~~lk 674 (1075)
T KOG2171|consen 631 -E---------EQ-DLDGW---EVVEL----------GDKENI---------GIRT---SVLDEKETACEALGEYAKELK 674 (1075)
T ss_pred -h---------cc-ccccc---hhhcc----------CCceee---------eeee---hhHHHHHHHHHHHHHHHHhhh
Confidence 0 00 00000 00000 000000 0111 001123457778888887776
Q ss_pred CCCc---cchHHHHHHhcC-CChhhHHHHHHHHHHhhhhc-------Ccc-------cchHHHHHHhhcccc--hhHHHH
Q 001062 847 LSSH---EHIENVIIESFQ-SPFEEIKSAASYALGNIAVG-------NLS-------KFLPFILDQIDNQQK--KQYLLL 906 (1167)
Q Consensus 847 ~~~~---~~~~~~l~~~l~-~~~e~vr~aaa~aLG~l~~~-------~~~-------~~lp~l~~~l~~~~~--~~~~~l 906 (1167)
..|. +++....+..++ ..+++||.+|+.+++.++.. .+. .+.|.++..+..++. .-..++
T Consensus 675 ~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl 754 (1075)
T KOG2171|consen 675 EAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEIL 754 (1075)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHH
Confidence 6654 356665555555 56899999999999987742 221 234555566666544 356689
Q ss_pred HHHHHHHhhcccc--chhhhhHHHHHHHHHHHhh----cc-----CCc-------c-------chhhHHHHHhhhccccC
Q 001062 907 HSLKEVIVRQSVD--KAEFQDSSVEKILNLLFNH----CE-----SEE-------E-------GVRNVVAECLGKIALIE 961 (1167)
Q Consensus 907 ~aLkei~~~~~~~--~~~~l~~~~~~i~~~L~~~----~~-----~~~-------e-------~vr~~aa~~Lg~l~~~~ 961 (1167)
.++.+.++.+|.. ..+........+...+... .+ .++ | ..-..+.+.+++++...
T Consensus 755 ~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~ 834 (1075)
T KOG2171|consen 755 ESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKAL 834 (1075)
T ss_pred HHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHc
Confidence 9999999988854 2222222222222222221 11 000 1 12234556666666544
Q ss_pred cc-------cchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHh
Q 001062 962 PA-------KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAH 1034 (1167)
Q Consensus 962 ~~-------~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~ 1034 (1167)
.. .+.|.+.+.+.+..+..|..+++.+.+++..++++.-++...+++.++..++|.+.+||++|.+++|.++.
T Consensus 835 k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq 914 (1075)
T KOG2171|consen 835 KGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQ 914 (1075)
T ss_pred cccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 43 45666666777767777999999999999999877777888889999999999999999999999999999
Q ss_pred cCchhhhchhhhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHH----HHHHHHHhhccccCCcccchHHHHh
Q 001062 1035 NKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAF----ECVDTLLDSCLDQVNPSSFIVPYLK 1110 (1167)
Q Consensus 1035 ~~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~----~~~~~ll~~~~~~~~~~~~~~~~~~ 1110 (1167)
..+....+.....+|.|.+....... | .|.+..|+ .|+.-++......+.+.+.+ +.++
T Consensus 915 ~~g~~y~~v~~~~l~~L~~~iq~~~a--r--------------~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl-~~~l 977 (1075)
T KOG2171|consen 915 FGGEDYAPVCSEALPLLVQVLQPPLA--R--------------TEENRRATENAIGAIAKILLFNPNRIPVDQVL-PAWL 977 (1075)
T ss_pred HcCcchHHHHHHHHHHHHHHHcChhh--h--------------hHHHhHHHHHHHHHHHHHHHhCCccCcHHHHH-HHHH
Confidence 99998777777888887765543211 1 24444444 45555555544455566666 6666
Q ss_pred cccCC--cchhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhccccc
Q 001062 1111 SGLED--HYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGLIG 1158 (1167)
Q Consensus 1111 ~gl~D--~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~ 1158 (1167)
..|.= +.+.-.-.+..|..|.+..+-.|.+...+.+|.+-.++...+.
T Consensus 978 ~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~ 1027 (1075)
T KOG2171|consen 978 SWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLA 1027 (1075)
T ss_pred HhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhh
Confidence 55542 3334446788888888877777777555555555444444433
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-39 Score=349.34 Aligned_cols=676 Identities=14% Similarity=0.192 Sum_probs=485.7
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHH-----------------------------------HHhcccccCCChHHHHHHH
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLL-----------------------------------NELNKESFKADADLEVKLS 48 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~-----------------------------------~~l~~~~~~~~~~~~~~i~ 48 (1167)
.++.++++...|||+++|-.+..-|. +.+...+..+.......+.
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK 92 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK 92 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH
Confidence 35666777777777777765555444 2222233345557788899
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHH
Q 001062 49 NIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSL 128 (1167)
Q Consensus 49 ~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i 128 (1167)
..+++.+.|+++.||+.....|..++.+..-..|+++++.|++.+.+++....++|.-||.++|++.+..
T Consensus 93 s~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~---------- 162 (885)
T KOG2023|consen 93 SECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQF---------- 162 (885)
T ss_pred HHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHH----------
Confidence 9999999999999999999999999998888889999999999999888778899999999999876541
Q ss_pred HHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---
Q 001062 129 TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL--- 205 (1167)
Q Consensus 129 ~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~--- 205 (1167)
+. . ++ .....+-++|.+++..+++++++|+.|+.|+..+...-++.+
T Consensus 163 ----ld---s---~~--------------------~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~ 212 (885)
T KOG2023|consen 163 ----LD---S---DV--------------------LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVH 212 (885)
T ss_pred ----Hh---h---hc--------------------ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHH
Confidence 00 0 00 012345677788888899999999999999999998888874
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh-
Q 001062 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR- 284 (1167)
Q Consensus 206 ~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~- 284 (1167)
++++++.+.....++ +.++|+..+.++..+.+..|+++.||++.+|.++++..++ .|+++ |+++++.|...
T Consensus 213 iD~Fle~lFalanD~--~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd---~dE~V---ALEACEFwla~a 284 (885)
T KOG2023|consen 213 IDKFLEILFALANDE--DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQD---VDENV---ALEACEFWLALA 284 (885)
T ss_pred HHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccC---cchhH---HHHHHHHHHHHh
Confidence 677888888776554 4589999999999999999999999999999999998887 66666 66666666543
Q ss_pred ----CCccccccHHHHHHHHHHhhccCCCC----CCCCCCC---Ccccc--------------cc-cccchhhcCCCCCC
Q 001062 285 ----CPRDISSYCDEILHLTLEYLSYDPNF----TDNMEED---SDDEA--------------YE-EEEEDESANEYTDD 338 (1167)
Q Consensus 285 ----~~~~~~~~l~~ii~~~~~~l~~dp~~----~~~~~~d---~~~~~--------------~~-~~~d~~~~~~~~dd 338 (1167)
|+..+.||+++++++++..|.|...- .+.+||+ |-++| ++ +++||++|++++||
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 34457799999999999999986421 1111111 10111 11 12222222222444
Q ss_pred CCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHH
Q 001062 339 EDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1167)
Q Consensus 339 dd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~ 418 (1167)
..+.|.+|++++.+|+.+..-+++ +++..++|.|-+.+...+|.||.+.+-+++++.+ ||..
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~~---elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE---------------GcM~ 426 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFGD---ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE---------------GCMQ 426 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhHH---HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH---------------HHhh
Confidence 556799999999999999988875 5677888988888877889999999999999865 3445
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhc-CchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHh
Q 001062 419 LLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL-PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 497 (1167)
Q Consensus 419 ~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~-~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~ 497 (1167)
.+-+++|.+++.+..+|.++.+-+|...+.+|+...... ...-..|+.+++..+.+.+-|+ +.++..+|+..+..+-
T Consensus 427 g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~--NK~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 427 GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDS--NKKVQEAACSAFATLE 504 (885)
T ss_pred hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHH
Confidence 677899999999999999999999987777776554432 1223467888888888888887 4689999999999998
Q ss_pred ccCCCCchhhhhHhhHHHHHHHhc---CCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhc-CCC
Q 001062 498 SSHSPPVFHPYIKALSSPVLAAVG---ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN-QDQ 573 (1167)
Q Consensus 498 ~~~~~~~~~~~l~~ll~~l~~~l~---d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~-~d~ 573 (1167)
+..+ +.+-||+..|+..+..+++ .++-.+...|++++++-+.+-- +-..|++-+||.++++.+. +|.
T Consensus 505 E~A~-~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~L--------n~~~YiqiLmPPLi~KW~~lsd~ 575 (885)
T KOG2023|consen 505 EEAG-EELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHAL--------NKPAYIQILMPPLIEKWELLSDS 575 (885)
T ss_pred Hhcc-chhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhc--------CcHHHHHHhccHHHHHHHhcCcc
Confidence 8765 5677899999999998875 4555788888888777664311 1245899999999998753 244
Q ss_pred CHHHHHHHHHHHHHHHHhcCcccccchh----hhHHHHHHhhc------Cch-----hh---HHHHHHHHHHhcCCCCCc
Q 001062 574 DQEVKECAISCMGLVISTFGDNLGAELP----ACLPVLVDRMG------NEI-----TR---LTAVKAFAVIAASPLHID 635 (1167)
Q Consensus 574 ~~~vr~~Ai~alg~l~~~~g~~l~~~~~----~~l~~L~~~L~------~e~-----~r---~~a~~al~~i~~~~~~~~ 635 (1167)
|.++ -.-+.|+..++..+|..|.||.+ +++.++...+. +.. .| .+++..+.-++.+- +..
T Consensus 576 DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegL-g~~ 653 (885)
T KOG2023|consen 576 DKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGL-GSH 653 (885)
T ss_pred cchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHh-hhc
Confidence 4444 36688999999999988887554 45555543321 111 11 23444444444221 112
Q ss_pred hhhHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhh
Q 001062 636 LTCVLE--HVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMA 713 (1167)
Q Consensus 636 ~~~~~~--~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~ 713 (1167)
+++.+. .++..+...+.+.-..+|++|+..|+.+.+.+...+-+ ....++..+...+......+.+.|.-++|.++.
T Consensus 654 ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p-~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~ 732 (885)
T KOG2023|consen 654 IEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIP-NLADFLPILGANLNPENISVCNNAIWAIGEIAL 732 (885)
T ss_pred hHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHH
Confidence 233332 25666777777888999999999999999987654433 345556656666666667788888889999887
Q ss_pred cccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccC
Q 001062 714 DKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSAN 762 (1167)
Q Consensus 714 ~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~ 762 (1167)
. ......++...++..++..++.+-.....++...--++.++...|
T Consensus 733 k---~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~P 778 (885)
T KOG2023|consen 733 K---MGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICP 778 (885)
T ss_pred H---hchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCH
Confidence 6 444455678888888888887665444444444444444544443
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-30 Score=302.54 Aligned_cols=932 Identities=15% Similarity=0.168 Sum_probs=584.7
Q ss_pred HHHHHhcC-CChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh---HH
Q 001062 8 AILEKITG-KDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR---VV 83 (1167)
Q Consensus 8 ~ll~~~~~-~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~---~~ 83 (1167)
++|+.+.+ +-+-+|. ++-|+..++-++ .+++ ..+.+++.++++.+++++..|..|+..|..+...+++.. +.
T Consensus 83 ~lL~~~~~E~~~~vr~-k~~dviAeia~~--~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~ 158 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRH-KLADVIAEIARN--DLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD 158 (1075)
T ss_pred HHHHHHHhccchHHHH-HHHHHHHHHHHh--cccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH
Confidence 34444333 3334443 344555555432 2344 789999999999999999999999999999988887653 34
Q ss_pred HHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhcc--CCChhHHHHHHHHHHHHHHHhc
Q 001062 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLK--DMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 84 ~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~--~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
.+..-+.+.+.+++..+|-.|..|+.+++...+.++-....+..++|.+++.++.- .++......++++|.+++...+
T Consensus 159 ~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p 238 (1075)
T KOG2171|consen 159 DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP 238 (1075)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch
Confidence 66666667777877779999999999999888643333445677888888777542 2245567899999999999999
Q ss_pred cchhHHHHHHHHHHhhhhcCCh--HHHHHHHHHHHHHHHhhcCHH------HHHHHHHHHHHHhhcCC----CC------
Q 001062 162 NLMSNDHERLLSALLPQLSANQ--ASVRKKSVSCIASLASSLSDD------LLAKATIEVVRNLRSKG----AK------ 223 (1167)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~~~--~~vrk~a~~~l~~l~~~~~~~------~~~~l~~~l~~~l~~~~----~~------ 223 (1167)
+.+.++...+++..++...+.+ ..+|..|++++..++.+.+.. +..++++.++..+.+.. |.
T Consensus 239 k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d 318 (1075)
T KOG2171|consen 239 KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD 318 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence 9999999999999999988765 499999999999999885432 45667777776654321 10
Q ss_pred ----hHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHH
Q 001062 224 ----PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHL 299 (1167)
Q Consensus 224 ----~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~ 299 (1167)
+.....+.+++-.++...|.+. -+|.+++.+-..+++ .+---|.+++.+++.+.+.|++.|.+.+++|++.
T Consensus 319 ed~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 319 EDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQS---TEWKERHAALLALSVIAEGCSDVMIGNLPKILPI 393 (1075)
T ss_pred cccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1234567788888887765321 246778888888888 7788899999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhh-HHHhh
Q 001062 300 TLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACP-KLIDR 378 (1167)
Q Consensus 300 ~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p-~L~~~ 378 (1167)
++.+++ || ..+||-||+.|+|.+...++..+...+...+| .|+..
T Consensus 394 Vl~~l~-Dp---------------------------------hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ 439 (1075)
T KOG2171|consen 394 VLNGLN-DP---------------------------------HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIAL 439 (1075)
T ss_pred HHhhcC-CC---------------------------------CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHH
Confidence 999886 33 45999999999999999887777777766665 55544
Q ss_pred hccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHH-HHHHHhccCChhhHHHHHHHHHHHHHhc
Q 001062 379 FKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVK-SINRQLREKSIKTKVGAFSVLRELVVVL 457 (1167)
Q Consensus 379 l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~-~l~~~L~~~~~~~r~~~~~~l~~l~~~~ 457 (1167)
+ |+..++|..+-.+ ..+++.... -+.+.+.+|+|.+++ .+...+.+.++.++..++.++++.+...
T Consensus 440 l-d~~~~~rV~ahAa-~al~nf~E~-----------~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 440 L-DSTQNVRVQAHAA-AALVNFSEE-----------CDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred h-cccCchHHHHHHH-HHHHHHHHh-----------CcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 4 4555555433222 223332211 122578999999998 4444456667789999999999999999
Q ss_pred CchhHhhhhhhHHHHHHhcccCC--CCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHH---hcCCchHHHHHHH
Q 001062 458 PDCLADHIGSLIPGIEKSLNDKS--STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAA---VGERYYKVTAEAL 532 (1167)
Q Consensus 458 ~~~l~~~l~~l~~~l~~~l~d~~--~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~---l~d~~~~v~~~al 532 (1167)
...|.+|++.++|.+.+.|.... ....+|..++.+++.+....+.+.|.++...++..+... ..+.+...++..+
T Consensus 507 ~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~ 586 (1075)
T KOG2171|consen 507 QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMI 586 (1075)
T ss_pred hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHH
Confidence 99999999999999999998643 233577788888888887778889999999999888877 4455667888899
Q ss_pred HHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhh-hHHHHHHhh
Q 001062 533 RVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPA-CLPVLVDRM 611 (1167)
Q Consensus 533 ~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~-~l~~L~~~L 611 (1167)
..++.+++.+|+ +|.||++.+||.++...+.. .+..+-.. .+.......-|-.+...-+. .+.+-..
T Consensus 587 ~~warmc~ilg~-------~F~p~L~~Vmppl~~ta~~~-p~~~~~d~--~d~e~~~~~~~~e~~~~~~~e~~~I~Ts-- 654 (1075)
T KOG2171|consen 587 AFWARMCRILGD-------DFAPFLPVVMPPLLKTARLD-PDVALSDE--EDEEEEQDLDGWEVVELGDKENIGIRTS-- 654 (1075)
T ss_pred HHHHHHHHHhch-------hhHhHHHHHhHHHHHhhccC-CcccCcCc--hhhhhccccccchhhccCCceeeeeeeh--
Confidence 999999999977 79999999999998877532 21111000 00000000000000000000 0000000
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Q 001062 612 GNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFL-RKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELS 690 (1167)
Q Consensus 612 ~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L-~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~ 690 (1167)
--..+..|+.+|+..+.- .+..|.||+.++++.....+ ---..++|.++++++..++.+......
T Consensus 655 -vl~eK~~A~~~Lv~~a~~-lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~------------ 720 (1075)
T KOG2171|consen 655 -VLDEKETACEALGEYAKE-LKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQ------------ 720 (1075)
T ss_pred -hHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 002367899999988854 35678999999998333333 345788999999999998876432100
Q ss_pred hhcCCCchhhHHHHHHHHHHHhhcccCCCchhhhhhhchHHHHHHHhhhcc---chhhhHHHHHHHHHHHHhcc--CCCh
Q 001062 691 TLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSL---LQGQALVALQSFFAALVYSA--NTSF 765 (1167)
Q Consensus 691 ~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~---l~~~~l~~~~~~~~~l~~~~--~~~~ 765 (1167)
. .|.........+.|.++..++..- +-...+.++..+++..+..+ .+..
T Consensus 721 -----~---------------------~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~ 774 (1075)
T KOG2171|consen 721 -----G---------------------GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGL 774 (1075)
T ss_pred -----c---------------------ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHH
Confidence 0 000000111112222222222111 00111222333333222111 0001
Q ss_pred HHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccC
Q 001062 766 DTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRK 845 (1167)
Q Consensus 766 ~~ll~~L~~~~~~~~~~~~~~~~a~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~ 845 (1167)
..+...+...+ .. ++...-.+.-+..... .+... ...+. |-
T Consensus 775 ~~~~~~~~~~~--------------------l~---------~~~~~~~r~~~~~eed--~d~~e-ee~~~---e~---- 815 (1075)
T KOG2171|consen 775 EALLGGLLAQL--------------------LQ---------HFKRMQDRQEEDDEED--DDIEE-EEDLD---EQ---- 815 (1075)
T ss_pred HHHHHHHHHHH--------------------HH---------HHHHHHhhhhhhhhhh--hhhHH-HHHHh---hh----
Confidence 11111110000 00 0000000000000000 00000 00000 00
Q ss_pred CCCCccchHHHHHHhcCCChhhHHHHHHHHHHhhhhcCcccchHHHHHHhhcc-cchhHHHHHHHHHHHhhccccchhhh
Q 001062 846 DLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQ-QKKQYLLLHSLKEVIVRQSVDKAEFQ 924 (1167)
Q Consensus 846 ~~~~~~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~~-~~~~~~~l~aLkei~~~~~~~~~~~l 924 (1167)
+ ..+++.+. ++--+.+.+.+.--.....++.|.+++.+.++ +..|...+-.+.+++..++. +.
T Consensus 816 d----~~ll~~i~--------~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~----a~ 879 (1075)
T KOG2171|consen 816 D----AYLLDAIS--------DILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGE----AS 879 (1075)
T ss_pred h----HHHHHHHH--------HHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccc----cc
Confidence 0 00111110 01111222222211223355677777777663 33477778888888888876 34
Q ss_pred hHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhh
Q 001062 925 DSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIF 1004 (1167)
Q Consensus 925 ~~~~~~i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~ 1004 (1167)
.++....++.++..+.+.+.+||.+|++-+|-++-..++.|-|.+.+
T Consensus 880 ~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~--------------------------------- 926 (1075)
T KOG2171|consen 880 AKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSE--------------------------------- 926 (1075)
T ss_pred chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHH---------------------------------
Confidence 56777888888888888888899999998888776555444332222
Q ss_pred HhHHHHHhhccC------CChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhccccceeeeeccCceeecccCh
Q 001062 1005 PEISSFLMLIKD------QDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGL 1078 (1167)
Q Consensus 1005 ~~i~~~l~~l~d------~d~~vr~~a~~~L~~~a~~~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gl 1078 (1167)
.++.+...++. .+....-.+..++.++..++|..+- +++++|.++..+-.+ ++.
T Consensus 927 -~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~--vdqvl~~~l~~LPl~-----------------~D~ 986 (1075)
T KOG2171|consen 927 -ALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP--VDQVLPAWLSWLPLK-----------------EDK 986 (1075)
T ss_pred -HHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc--HHHHHHHHHHhCCCc-----------------cch
Confidence 22222322221 2223445677778888888888655 899999999887653 456
Q ss_pred hHHHHHHHHHHHHHhhcccc------CCcccchHHHHhcccCC---cchhHHHH--HHHHHHHHhhCchHHHHHHHHHHH
Q 001062 1079 ELRKAAFECVDTLLDSCLDQ------VNPSSFIVPYLKSGLED---HYDVKMPC--HLILSKLADKCPSAVLADFLHLMY 1147 (1167)
Q Consensus 1079 e~Rk~a~~~~~~ll~~~~~~------~~~~~~~~~~~~~gl~D---~~di~~l~--~~~l~~l~~~~p~~~~~~l~~l~~ 1147 (1167)
|.-+-.|+++..|++.-+.. -++..|+ .++..++.+ .++-. ++ ..++..+- -.|+.+.+.+..+.+
T Consensus 987 eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~-~v~~~~~~~~~~~~~~~-~~r~~~ilkq~~-~~~~~~~~~~~~L~~ 1063 (1075)
T KOG2171|consen 987 EEAVPIYTFLSDLYESNHPIVLGPNNQNIPKIL-SVCAESLADKKIEPRST-LARVIEILKQFL-APPSQFAALLATLPP 1063 (1075)
T ss_pred hhhhhHHHHHHHHHHhCCCeeeCCCcccchHHH-HHHHhhhhccCCCccch-HHHHHHHHHHHh-cCHHHHHHHHHhCCH
Confidence 78889999999999874221 2455566 566655554 11111 22 22333333 377777778888888
Q ss_pred HHHHHhccccc
Q 001062 1148 TIITFSVGLIG 1158 (1167)
Q Consensus 1148 ~~~~~~~~~~~ 1158 (1167)
.....++.++.
T Consensus 1064 ~~~~~lq~~~~ 1074 (1075)
T KOG2171|consen 1064 DQQQALQAVLN 1074 (1075)
T ss_pred HHHHHHHHHhc
Confidence 88888777664
No 6
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-30 Score=288.26 Aligned_cols=671 Identities=15% Similarity=0.225 Sum_probs=497.6
Q ss_pred hhHHhHhHHHHHHHhcc-----------cccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhh-hcChhhHHHH
Q 001062 18 KDFRYMATSDLLNELNK-----------ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK-KVSEPRVVEM 85 (1167)
Q Consensus 18 ~d~R~mAl~dL~~~l~~-----------~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~-~~~~~~~~~l 85 (1167)
++.|..|.-.|++.|.. .|.+++.+..++|...+++.|.+|.+.+.+.|..|++.++. .++...|+.+
T Consensus 51 ~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~l 130 (859)
T KOG1241|consen 51 DVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPEL 130 (859)
T ss_pred HHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHH
Confidence 45677777777777753 45778888999999999999999999999999999999996 6888999999
Q ss_pred HHHHHHHhcCCCcc-hhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccch
Q 001062 86 TDKLCIKLLNGKDQ-HRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~-~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l 164 (1167)
+..|...+.++.+. +++.++.||+.+|+++.++ ....-.+.++..+.+++...+++..||..+..+|-.-++-.+..|
T Consensus 131 i~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF 209 (859)
T KOG1241|consen 131 IVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANF 209 (859)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhh
Confidence 99999998876554 8999999999999999996 556667889999999999988899999999999988877766666
Q ss_pred h--HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 001062 165 S--NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238 (1167)
Q Consensus 165 ~--~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~ 238 (1167)
. ....-+++...+..+.++..+|.+|+.||-.|.....+- +. +.++...++.+++++ +++...++..|+++|
T Consensus 210 ~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~--deValQaiEFWstic 287 (859)
T KOG1241|consen 210 NNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDN--DEVALQAIEFWSTIC 287 (859)
T ss_pred ccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHH
Confidence 5 455668899999998999999999999999998765443 22 335556667777654 488889999999988
Q ss_pred HH-------hhhhhhcch------------hhhHHHHHHHhhhcCCCC--hh--HHHHHHHHHHHHHHhCCccccccHHH
Q 001062 239 RA-------VGYRFGPHL------------GDTVPVLIDYCTSASEND--EE--LREYSLQALESFLLRCPRDISSYCDE 295 (1167)
Q Consensus 239 ~~-------~~~~~~p~l------------~~lvp~l~~~l~~~~e~~--~e--~re~al~~l~~l~~~~~~~~~~~l~~ 295 (1167)
.. .++.+..++ +.++|.+++.+..++|++ |+ ...+|-.+|..+...|+.++-| .
T Consensus 288 eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~---~ 364 (859)
T KOG1241|consen 288 EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP---H 364 (859)
T ss_pred HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh---h
Confidence 74 133333333 489999999998754322 22 5667778888888888866544 2
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcC-ChhhHHHHHHHhhH
Q 001062 296 ILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-PEMLSKLYEEACPK 374 (1167)
Q Consensus 296 ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~-~~~l~~~~~~i~p~ 374 (1167)
+++.+-+.++ ..+|+-|.+|+.++|++.... ++.+.++....+|.
T Consensus 365 Vl~Fiee~i~----------------------------------~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ 410 (859)
T KOG1241|consen 365 VLPFIEENIQ----------------------------------NPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPS 410 (859)
T ss_pred hHHHHHHhcC----------------------------------CcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHH
Confidence 2333322222 125999999999999998864 57788899999999
Q ss_pred HHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHH
Q 001062 375 LIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELV 454 (1167)
Q Consensus 375 L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~ 454 (1167)
++..+.|+.-.||..+-.+++.+++..... . .-+.+.+.++..+...|++ .+++...++.++..|+
T Consensus 411 ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~---------~----~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 411 IINLMSDPSLWVKDTAAWTLGRIADFLPEA---------I----INQELLQSKLSALLEGLND-EPRVASNVCWAFISLA 476 (859)
T ss_pred HHHHhcCchhhhcchHHHHHHHHHhhchhh---------c----ccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHH
Confidence 999999999899988889999998865310 0 1145667788888888876 4677778888888888
Q ss_pred HhcCch---------hHhhhhhhHHHHHHhcccCC-CCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhc---
Q 001062 455 VVLPDC---------LADHIGSLIPGIEKSLNDKS-STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG--- 521 (1167)
Q Consensus 455 ~~~~~~---------l~~~l~~l~~~l~~~l~d~~-~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~--- 521 (1167)
+.+++. ..++++.|+..+.+.-.-.. ..+++|..++..|..+++.. +....+.+..+.+.+...+.
T Consensus 477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~s-t~~vy~~v~~~~l~il~kl~q~i 555 (859)
T KOG1241|consen 477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNS-TDDVYPMVQKLTLVILEKLDQTI 555 (859)
T ss_pred HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 765332 23567777777776554211 35679999999999999964 56677777777777766443
Q ss_pred --------CC--chHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 001062 522 --------ER--YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIST 591 (1167)
Q Consensus 522 --------d~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~ 591 (1167)
|+ ...+..--..+++.+.+.+++ ++.++.+.+|..++..++. ..+.-+.+.|+.+++.++.+
T Consensus 556 ~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-------~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 556 SSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-------DIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAES 627 (859)
T ss_pred HHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-------cchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHH
Confidence 11 123444445566777766655 5678999999999999875 23456789999999999999
Q ss_pred cCcccccchhhhHHHHHHhhcCchhh---HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHh--hHHHHHHHHHHH
Q 001062 592 FGDNLGAELPACLPVLVDRMGNEITR---LTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA--NRALRQATLGTM 666 (1167)
Q Consensus 592 ~g~~l~~~~~~~l~~L~~~L~~e~~r---~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~--~~~lr~~al~~L 666 (1167)
+|..|..|.+.+.|.|...|+|...+ ..|+..+|.++++ ...+|-||...++..|...|+++ +|.+|...+.++
T Consensus 628 Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra-L~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~F 706 (859)
T KOG1241|consen 628 LGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA-LEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVF 706 (859)
T ss_pred HhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHccCccccccccchHHHHH
Confidence 99999999999999999999887644 4566777788765 46788999999999999999875 789999999999
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHhhhc-------CCC-c-------hhhHHHHHHHHHHHhhcccCCC-chhhhhhhchH
Q 001062 667 NSLVVAYGDKIGASAYEVIIVELSTLI-------SDS-D-------LHMTALALELCCTLMADKRSSP-NVGLAVRNKVL 730 (1167)
Q Consensus 667 ~~l~~~~~~~~~~~~~~~~l~~l~~~l-------~~~-d-------~~~~~~al~~l~~l~~~~~~~p-~~~~~~~~~~l 730 (1167)
+.|+.+.|.+ +++.++.+.+++ .++ | ..+|..++++..-+++. .. .........++
T Consensus 707 gDIAlaIg~~-----F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qg---lk~~~~~~~~~p~v 778 (859)
T KOG1241|consen 707 GDIALAIGAD-----FEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQG---LKTHADVMLVQPYV 778 (859)
T ss_pred HHHHHHHHHh-----HHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHH---hhcccchhhhhcch
Confidence 9999999864 333333333322 111 1 13677778777666654 22 11223455667
Q ss_pred HHHHHHhh----hccchhhhHHHHHHHHHHHHhc
Q 001062 731 PQALALIK----SSLLQGQALVALQSFFAALVYS 760 (1167)
Q Consensus 731 ~~l~~ll~----~~~l~~~~l~~~~~~~~~l~~~ 760 (1167)
|++++++. .+..++....+.+.+++.++..
T Consensus 779 ~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~ 812 (859)
T KOG1241|consen 779 PHIISFIDRIAAEPDVSEALHAAALGLIGDLATM 812 (859)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 77777664 2333444445566666666543
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-29 Score=273.11 Aligned_cols=603 Identities=14% Similarity=0.164 Sum_probs=443.3
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCC----hHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChh
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKAD----ADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP 80 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~----~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~ 80 (1167)
-+.++.+-+.++|-..-..|...|.+..++....+| ..-.+-+++.+++....+++.+|..|+.|+.+++..-+..
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa 208 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA 208 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence 456778888888877777888888888776332222 2556788999999999999999999999999888544332
Q ss_pred ---hHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 001062 81 ---RVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1167)
Q Consensus 81 ---~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~ 157 (1167)
.+..+++.|+....+.++++|.-.+.||..+.+-.+. -..+.++.|+..+++.-++. +++|..+|++.+..++
T Consensus 209 l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~tqd~--dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 209 LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRTQDV--DENVALEACEFWLALA 284 (885)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHh
Confidence 4678899999998888999999999999988876554 23445677777777776665 5789999999999999
Q ss_pred HH--hccchhHHHHHHHHHHhhhhc-----------CC------------------------------------------
Q 001062 158 HK--FGNLMSNDHERLLSALLPQLS-----------AN------------------------------------------ 182 (1167)
Q Consensus 158 ~~--~g~~l~~~~~~l~~~ll~~l~-----------~~------------------------------------------ 182 (1167)
+. +...+.+|.+.++|.++..+. ++
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 86 445667999999999987543 00
Q ss_pred ---hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHH
Q 001062 183 ---QASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDY 259 (1167)
Q Consensus 183 ---~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~ 259 (1167)
+|.+||.++.+++.++...+++++..++|.+.+.+.++.| -.|+.++.++|+||+.|-+.|.||+|.++|+++++
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W--~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~ 442 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEW--KVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSL 442 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchh--hhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHH
Confidence 1789999999999999999999999999999999999877 68999999999999999999999999999999999
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhCCcccc-ccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCC
Q 001062 260 CTSASENDEELREYSLQALESFLLRCPRDIS-SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDD 338 (1167)
Q Consensus 260 l~~~~e~~~e~re~al~~l~~l~~~~~~~~~-~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dd 338 (1167)
+.+ ..+-+|..+.|++..+..+.-.+-+ .|+..++.-+++.+- |
T Consensus 443 L~D---KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll-D------------------------------- 487 (885)
T KOG2023|consen 443 LDD---KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL-D------------------------------- 487 (885)
T ss_pred hcc---CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh-c-------------------------------
Confidence 988 7788999999998877655432222 455555554444432 2
Q ss_pred CCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhh---ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCc
Q 001062 339 EDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF---KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415 (1167)
Q Consensus 339 dd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l---~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 415 (1167)
..-+|.+||+.++.++.+..++.+-++++.++..|..+| +.++--+..+++++++.-+.+.-+ .
T Consensus 488 --~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln-----------~ 554 (885)
T KOG2023|consen 488 --SNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALN-----------K 554 (885)
T ss_pred --ccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcC-----------c
Confidence 224899999999999999988888889999999998777 344444555666555544432211 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcc-----------cC---CC
Q 001062 416 PRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN-----------DK---SS 481 (1167)
Q Consensus 416 p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~-----------d~---~~ 481 (1167)
| ..++-.+|++++.-. ++++++. ----.+..|++++..++.+|.||.+++....++.+. |. ..
T Consensus 555 ~-~YiqiLmPPLi~KW~-~lsd~DK-dLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~p 631 (885)
T KOG2023|consen 555 P-AYIQILMPPLIEKWE-LLSDSDK-DLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAP 631 (885)
T ss_pred H-HHHHHhccHHHHHHH-hcCcccc-hHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCC
Confidence 1 244555566655432 2334332 222345667888888888888887766554444333 11 12
Q ss_pred CchHHHHHHHHHHHHhccCCCCchhhhh--HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHH
Q 001062 482 TSNLKIEALTFTRLVLSSHSPPVFHPYI--KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP 559 (1167)
Q Consensus 482 ~~~~~~~al~~l~~l~~~~~~~~~~~~l--~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~ 559 (1167)
+.+.-+.++.+++.++++.+ ..+.+.+ ..++..+..|++|.-++||+.++..+|++.+.+-+ ...|++..
T Consensus 632 dkdfiI~sLDL~SGLaegLg-~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~-------~v~p~~~~ 703 (885)
T KOG2023|consen 632 DKDFIIVSLDLLSGLAEGLG-SHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFE-------HVIPNLAD 703 (885)
T ss_pred CcceEEEeHHHHhHHHHHhh-hchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-------hccchHHH
Confidence 33455778899999998765 3455533 35889999999999999999999999999998743 46788899
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchh----hHHHHHHHHHHhcCCCCCc
Q 001062 560 IYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEIT----RLTAVKAFAVIAASPLHID 635 (1167)
Q Consensus 560 l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~----r~~a~~al~~i~~~~~~~~ 635 (1167)
.++.+-..+... .-.+..+|++++|+++..+|....+++..++.-|...++.+.+ -+.+.-++|.+..-. +..
T Consensus 704 fl~~lg~Nl~~~--~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~-Pe~ 780 (885)
T KOG2023|consen 704 FLPILGANLNPE--NISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYIC-PEE 780 (885)
T ss_pred HHHHHhhcCChh--hchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccC-HHh
Confidence 888876555321 2367899999999999999988888888888877766654332 244555566665321 223
Q ss_pred hhhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhCC
Q 001062 636 LTCVLEHVIAELTAFLRK-ANRALRQATLGTMNSLVVAYGD 675 (1167)
Q Consensus 636 ~~~~~~~~l~~L~~~L~~-~~~~lr~~al~~L~~l~~~~~~ 675 (1167)
+.|+++..+..-+.-++. .+..-+.+|++-++.++.-.+.
T Consensus 781 vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 781 VAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred cchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCch
Confidence 456666666655555543 3455688888888888765543
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-27 Score=264.09 Aligned_cols=613 Identities=15% Similarity=0.235 Sum_probs=432.8
Q ss_pred chHHHHHHHHHhcC--CChhHHhHhHHHHHHHhcccccCCCh-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcC
Q 001062 2 ANLQMAAILEKITG--KDKDFRYMATSDLLNELNKESFKADA-DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1167)
Q Consensus 2 ~~~~i~~ll~~~~~--~d~d~R~mAl~dL~~~l~~~~~~~~~-~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~ 78 (1167)
.|-.+..+.+.|+. ++.++|.+|++.|++.|+.-.-+++. ...+.|++.+...-..|+.+||.+|..||..++.-+.
T Consensus 170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 45567778888865 78899999999999999864434443 3445667888899999999999999999999997665
Q ss_pred hhhHHHHHHHHHHHhcC-CCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHh--hhccCCChhHHHHHHHHHHH
Q 001062 79 EPRVVEMTDKLCIKLLN-GKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKG--ITLKDMNTEIRCECLDILCD 155 (1167)
Q Consensus 79 ~~~~~~l~~~L~~~~~~-~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~--l~~~~~~~~v~~~~~~~L~~ 155 (1167)
+.-...+-+.|+..... -+++.-+++..|+. ++..+++.=+...... ..+....|.-.
T Consensus 250 ~~m~~yM~~alfaitl~amks~~deValQaiE----------FWsticeEEiD~~~e~~e~~d~~~~p~~~--------- 310 (859)
T KOG1241|consen 250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIE----------FWSTICEEEIDLAIEYGEAVDQGLPPSSK--------- 310 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhcCCCchhh---------
Confidence 54444555557764331 11233457777765 4444444433322210 01111011000
Q ss_pred HHHHhccchhHHHHHHHHHHhhhhc-------CChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHH
Q 001062 156 VLHKFGNLMSNDHERLLSALLPQLS-------ANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIR 228 (1167)
Q Consensus 156 l~~~~g~~l~~~~~~l~~~ll~~l~-------~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~ 228 (1167)
.|.. ...+.++|.+++.|. +++|..-|+|-.||..++...++++...+++++.+.+++++| +.|+
T Consensus 311 ---~fa~---~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdw--r~re 382 (859)
T KOG1241|consen 311 ---YFAR---QALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDW--RNRE 382 (859)
T ss_pred ---HHHH---HHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcch--hhhh
Confidence 0111 223344444444443 245799999999999999999999999999999999999987 7899
Q ss_pred HHHHHHHHHHHH-hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccc--ccHHHHHHHHHHhhc
Q 001062 229 TNIQMVGALSRA-VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS--SYCDEILHLTLEYLS 305 (1167)
Q Consensus 229 ~~~~~l~~l~~~-~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~--~~l~~ii~~~~~~l~ 305 (1167)
.+..+||++... ++.++.|+.+..+|.++..+.+ ..--+|+++.|+|+.++..+|+.+- .++..++..+++.+.
T Consensus 383 aavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D---~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 383 AAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD---PSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred HHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC---chhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 999999999986 6778999999999999999886 6778899999999999999996554 478888999998887
Q ss_pred cCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhc-CChhhHHHHHHHhhHHHhhh--cc-
Q 001062 306 YDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLYEEACPKLIDRF--KE- 381 (1167)
Q Consensus 306 ~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~-~~~~l~~~~~~i~p~L~~~l--~d- 381 (1167)
..|..+. ..+|..=.-|-.+-.+.... ..+...++|+.++..|++.- .|
T Consensus 460 DePrva~---------------------------N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dg 512 (859)
T KOG1241|consen 460 DEPRVAS---------------------------NVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADG 512 (859)
T ss_pred hCchHHH---------------------------HHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhcccccc
Confidence 5454211 12343322221121111111 11223368888888887553 12
Q ss_pred CChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccC--ChhhH-------HHHHHHHHH
Q 001062 382 REENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK--SIKTK-------VGAFSVLRE 452 (1167)
Q Consensus 382 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~--~~~~r-------~~~~~~l~~ 452 (1167)
.+-+.|..+++++.++++.... .....+.+..+.++..+.+.+.+. +...| -..+..|..
T Consensus 513 nqsNLR~AAYeALmElIk~st~-----------~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~ 581 (859)
T KOG1241|consen 513 NQSNLRSAAYEALMELIKNSTD-----------DVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQS 581 (859)
T ss_pred chhhHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHH
Confidence 3457999999999999987531 011233445555555555555421 11112 223445677
Q ss_pred HHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhc-CCchHHHHHH
Q 001062 453 LVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG-ERYYKVTAEA 531 (1167)
Q Consensus 453 l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~-d~~~~v~~~a 531 (1167)
+....+..+.+..+.++..+.+.++.+ .+..+..+++..++.++++.+ ..|..|++.+.|.+...++ -..+-|...|
T Consensus 582 i~rk~~~~~~~~~d~iM~lflri~~s~-~s~~v~e~a~laV~tl~~~Lg-~~F~kym~~f~pyL~~gL~n~~e~qVc~~a 659 (859)
T KOG1241|consen 582 IIRKVGSDIREVSDQIMGLFLRIFESK-RSAVVHEEAFLAVSTLAESLG-KGFAKYMPAFKPYLLMGLSNFQEYQVCAAA 659 (859)
T ss_pred HHHHccccchhHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 777777777788899999999999873 245688999999999999876 5899999999999999994 4578899999
Q ss_pred HHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhh
Q 001062 532 LRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM 611 (1167)
Q Consensus 532 l~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L 611 (1167)
.+.+|++++.++. ++.||.+.++..+++.|++...+.+||-.-+++.|.++...|..|.+|++.+++++...-
T Consensus 660 VglVgdl~raL~~-------~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 660 VGLVGDLARALED-------DILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999865 689999999999999999888899999999999999999999999999999999998643
Q ss_pred --c-----Cc------hhhHHHHHHHHHHhcCC-C--CC-chhhHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Q 001062 612 --G-----NE------ITRLTAVKAFAVIAASP-L--HI-DLTCVLEHVIAELTAFLRKA--NRALRQATLGTMNSLVVA 672 (1167)
Q Consensus 612 --~-----~e------~~r~~a~~al~~i~~~~-~--~~-~~~~~~~~~l~~L~~~L~~~--~~~lr~~al~~L~~l~~~ 672 (1167)
. .+ ..|+.++.+..-+...- . +. -+.||++.++.-+...-..+ ...+...++..|+.|+..
T Consensus 733 ~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~ 812 (859)
T KOG1241|consen 733 SVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATM 812 (859)
T ss_pred hccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 1 11 25788888877555221 1 11 13466666665444433222 367888999999999999
Q ss_pred hCCC-----CChhhHHHHHHHHhh
Q 001062 673 YGDK-----IGASAYEVIIVELST 691 (1167)
Q Consensus 673 ~~~~-----~~~~~~~~~l~~l~~ 691 (1167)
+|+. ++.+++.+++.+..+
T Consensus 813 fg~~~~~~~~~~~~i~~~L~~~~k 836 (859)
T KOG1241|consen 813 FGKGVIKLFLDEDWIKDFLNEGRK 836 (859)
T ss_pred cccchhhhhcchHHHHHHHHHhhh
Confidence 9854 234566666666543
No 9
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=99.97 E-value=4.5e-31 Score=252.09 Aligned_cols=119 Identities=51% Similarity=0.826 Sum_probs=108.3
Q ss_pred hhhhchhhhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhhccccCCcccchHHHHhcccCCcc
Q 001062 1038 NLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHY 1117 (1167)
Q Consensus 1038 ~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~~~~~~~~~~~~~~~~~~gl~D~~ 1117 (1167)
++++|+++.++|.+|.+|.+++++||+|+||||||++|||+|+||+||||||||+++|.+++|+.+|+ +++..|++|++
T Consensus 1 ~li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~-~~v~~GL~D~~ 79 (169)
T PF08623_consen 1 DLIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFL-DRVEAGLKDEH 79 (169)
T ss_dssp GGTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHH-HHHHHTTSS-H
T ss_pred CchHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHhhcCCcH
Confidence 36889999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred hhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhcccc
Q 001062 1118 DVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGLI 1157 (1167)
Q Consensus 1118 di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~~~~~~ 1157 (1167)
|||++|++||.|+++.+|..+.++||+++++++++++.=.
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~ 119 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKL 119 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999997533
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.94 E-value=8.3e-21 Score=204.99 Aligned_cols=595 Identities=13% Similarity=0.174 Sum_probs=423.3
Q ss_pred CChhHHhHhHHHHHHHhcc-----------cccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhh-hcChhhHH
Q 001062 16 KDKDFRYMATSDLLNELNK-----------ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK-KVSEPRVV 83 (1167)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~-----------~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~-~~~~~~~~ 83 (1167)
..+.+|..|.--|++.|.. .|..+..+.-.++....+++|.+|.+...+.|...++.++. .++...|+
T Consensus 53 s~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp 132 (858)
T COG5215 53 SNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWP 132 (858)
T ss_pred CcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccch
Confidence 4466788888888888753 34556778888999999999999999999999999999997 57888899
Q ss_pred HHHHHHHHHhcCCCcc-hhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhcc
Q 001062 84 EMTDKLCIKLLNGKDQ-HRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1167)
Q Consensus 84 ~l~~~L~~~~~~~~~~-~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~ 162 (1167)
.++..+...+.++.+. ....+..+++..|+.-.++ ...+..+.++-.+..+-.+.+++..||..++.+|-+-+.....
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe-~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~ 211 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPE-DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG 211 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHH-HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888776543 4556777788888877774 3333456666667776666677888999999999884433333
Q ss_pred chh--HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-----HHhhcCCCChHHHHHHHHHHH
Q 001062 163 LMS--NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVV-----RNLRSKGAKPEMIRTNIQMVG 235 (1167)
Q Consensus 163 ~l~--~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~-----~~l~~~~~~~~~r~~~~~~l~ 235 (1167)
.+. ...+-+++...+..+.++..++.+|+-|+..+.....+ ..+.+++..+ +.+++++ +++...++..|+
T Consensus 212 nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~-fm~~ymE~aL~alt~~~mks~n--d~va~qavEfWs 288 (858)
T COG5215 212 NFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK-FMQSYMENALAALTGRFMKSQN--DEVAIQAVEFWS 288 (858)
T ss_pred hhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcc--hHHHHHHHHHHH
Confidence 332 45567888888888888899999999999998865533 3334444333 3445555 378889999999
Q ss_pred HHHHH--hhhhhhcc---------------hhhhHHHHHHHhhhcCCC----ChhHHHHHHHHHHHHHHhCCccccccHH
Q 001062 236 ALSRA--VGYRFGPH---------------LGDTVPVLIDYCTSASEN----DEELREYSLQALESFLLRCPRDISSYCD 294 (1167)
Q Consensus 236 ~l~~~--~~~~~~p~---------------l~~lvp~l~~~l~~~~e~----~~e~re~al~~l~~l~~~~~~~~~~~l~ 294 (1167)
.+|.. .+.--..| +..++|-+++.+..++|+ |=...-+|-.+++.|...++..
T Consensus 289 ticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~------ 362 (858)
T COG5215 289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK------ 362 (858)
T ss_pred HHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH------
Confidence 99874 11111112 356899999998775422 2225566777788888887743
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCC-hhhHHHHHHHhh
Q 001062 295 EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP-EMLSKLYEEACP 373 (1167)
Q Consensus 295 ~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~-~~l~~~~~~i~p 373 (1167)
++.-++.|+.. |.. ..+|.-|.+|+.++|++....- +.+..+..+.+|
T Consensus 363 -i~~pVl~FvEq--ni~----------------------------~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp 411 (858)
T COG5215 363 -IMRPVLGFVEQ--NIR----------------------------SESWANREAAVMAFGSVMHGPCEDCLTKIVPQALP 411 (858)
T ss_pred -hHHHHHHHHHH--hcc----------------------------CchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhH
Confidence 23333344321 110 1269999999999999988643 567778899999
Q ss_pred HHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH
Q 001062 374 KLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLREL 453 (1167)
Q Consensus 374 ~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l 453 (1167)
.++.-+.|..--|+.....+++.+..+..-. .+| ..+++..+......+.+ .++....|...+..+
T Consensus 412 ~i~n~m~D~~l~vk~ttAwc~g~iad~va~~---------i~p----~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nl 477 (858)
T COG5215 412 GIENEMSDSCLWVKSTTAWCFGAIADHVAMI---------ISP----CGHLVLEVSASLIGLMD-CPFRSINCSWRKENL 477 (858)
T ss_pred HHHHhcccceeehhhHHHHHHHHHHHHHHHh---------cCc----cccccHHHHHHHhhhhc-cchHHhhhHHHHHhH
Confidence 9988888887778888778888887665310 111 23555555555555555 345555566666666
Q ss_pred HHhcCc-------hhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhc-----
Q 001062 454 VVVLPD-------CLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG----- 521 (1167)
Q Consensus 454 ~~~~~~-------~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~----- 521 (1167)
+..+++ .+.++.+.|+..+.+.-+-.......|..++..++.++..+ ++...+.+..++..+.+.+.
T Consensus 478 v~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~-~d~V~~~~a~~~~~~~~kl~~~isv 556 (858)
T COG5215 478 VDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC-PDAVSDILAGFYDYTSKKLDECISV 556 (858)
T ss_pred HHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 34566777777776654433334578999999999998865 45666666555555555442
Q ss_pred --------CC--chHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 001062 522 --------ER--YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIST 591 (1167)
Q Consensus 522 --------d~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~ 591 (1167)
|. ..++.+.-+.++..+++..++ +..+.-+.+|..++..++.++. .-+-.-.+.+++.+...
T Consensus 557 ~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~-------~ie~v~D~lm~Lf~r~les~~~-t~~~~dV~~aIsal~~s 628 (858)
T COG5215 557 LGQILATEDQLLVEELQSNYIGVLEAIIRTRRR-------DIEDVEDQLMELFIRILESTKP-TTAFGDVYTAISALSTS 628 (858)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-------CcccHHHHHHHHHHHHHhccCC-chhhhHHHHHHHHHHHH
Confidence 11 225566667777777766554 4566677899999988876533 34556778889999888
Q ss_pred cCcccccchhhhHHHHHHhhcCchhh---HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHh--hHHHHHHHHHHH
Q 001062 592 FGDNLGAELPACLPVLVDRMGNEITR---LTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA--NRALRQATLGTM 666 (1167)
Q Consensus 592 ~g~~l~~~~~~~l~~L~~~L~~e~~r---~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~--~~~lr~~al~~L 666 (1167)
+++.|..|.+.+.|.+.+.+ |+..| ..|+..+|.++++ ...+|.+|...++..|...|+++ +|.++.+.+.++
T Consensus 629 l~e~Fe~y~~~fiPyl~~al-n~~d~~v~~~avglvgdlant-l~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvF 706 (858)
T COG5215 629 LEERFEQYASKFIPYLTRAL-NCTDRFVLNSAVGLVGDLANT-LGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVF 706 (858)
T ss_pred HHHHHHHHHhhhhHHHHHHh-cchhHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHH
Confidence 99999999999999999988 44433 5677778888876 46789999999999999999765 789999999999
Q ss_pred HHHHHHhCCC
Q 001062 667 NSLVVAYGDK 676 (1167)
Q Consensus 667 ~~l~~~~~~~ 676 (1167)
+.|+.+.|..
T Consensus 707 gDIAlaiga~ 716 (858)
T COG5215 707 GDIALAIGAN 716 (858)
T ss_pred HHHHHHHhhh
Confidence 9999998853
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.94 E-value=2.7e-22 Score=216.37 Aligned_cols=594 Identities=14% Similarity=0.158 Sum_probs=399.2
Q ss_pred HHHHHHHh--cCCChhHHhHhHHHHHHHhcccccCCC-hHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhH
Q 001062 6 MAAILEKI--TGKDKDFRYMATSDLLNELNKESFKAD-ADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV 82 (1167)
Q Consensus 6 i~~ll~~~--~~~d~d~R~mAl~dL~~~l~~~~~~~~-~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~ 82 (1167)
+-.++... ..+++.+|..|++.|+..+..-..++. +...+++++.+...-+.++.++|.+|.-|+..++.-... .+
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~-fm 256 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK-FM 256 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH-HH
Confidence 33444443 347889999999999987754222222 355677888889999999999999999999998864432 23
Q ss_pred HHHHH-HHHHHh----cCCCcchhcHHHHHHH---HHHhh-cCCc--------------hhHHHHHHHHHHHHHHhhhcc
Q 001062 83 VEMTD-KLCIKL----LNGKDQHRDIASIALK---TIIAE-VTTS--------------SLAQSIHTSLTPQLTKGITLK 139 (1167)
Q Consensus 83 ~~l~~-~L~~~~----~~~~~~~r~~a~~aL~---~~~~~-~~~~--------------~~~~~~~~~i~p~Ll~~l~~~ 139 (1167)
..+++ .|+.+. .++++ +++..|.. ++|++ ++-+ -++......++|.|++.|..+
T Consensus 257 ~~ymE~aL~alt~~~mks~nd---~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q 333 (858)
T COG5215 257 QSYMENALAALTGRFMKSQND---EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ 333 (858)
T ss_pred HHHHHHHHHHHHHHHhcCcch---HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc
Confidence 34433 333332 23333 45555554 23432 1110 111222222333333322221
Q ss_pred CCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhc
Q 001062 140 DMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRS 219 (1167)
Q Consensus 140 ~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~ 219 (1167)
+ +.-..++|.+.+.|..||..++...++.++.+++.++-+.+++
T Consensus 334 ~------------------------------------ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~ 377 (858)
T COG5215 334 G------------------------------------EDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRS 377 (858)
T ss_pred C------------------------------------CCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccC
Confidence 1 0112456799999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHH-hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccc--cHHHH
Q 001062 220 KGAKPEMIRTNIQMVGALSRA-VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS--YCDEI 296 (1167)
Q Consensus 220 ~~~~~~~r~~~~~~l~~l~~~-~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~--~l~~i 296 (1167)
++| ..|+.++.+||++... +...+.|+++..+|.+.+.+.+ .---+++.+.|+++.+....+..+.| |++..
T Consensus 378 ~~w--~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D---~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~ 452 (858)
T COG5215 378 ESW--ANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSD---SCLWVKSTTAWCFGAIADHVAMIISPCGHLVLE 452 (858)
T ss_pred chh--hhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccc---ceeehhhHHHHHHHHHHHHHHHhcCccccccHH
Confidence 987 7899999999999886 4456899999999999988765 55568899999999999988877775 67777
Q ss_pred HHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHH
Q 001062 297 LHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLI 376 (1167)
Q Consensus 297 i~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~ 376 (1167)
+..++.-+...|-... ..||+.-.-+...- ......+..+.++|..++..|+
T Consensus 453 vsa~liGl~D~p~~~~---------------------------ncsw~~~nlv~h~a-~a~~~~~S~l~~fY~ai~~~Lv 504 (858)
T COG5215 453 VSASLIGLMDCPFRSI---------------------------NCSWRKENLVDHIA-KAVREVESFLAKFYLAILNALV 504 (858)
T ss_pred HHHHHhhhhccchHHh---------------------------hhHHHHHhHHHhhh-hhhccccchhHHHHHHHHHHHH
Confidence 7777666554442110 13565433222111 1111124456678988988887
Q ss_pred hh--hccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchH-----HHHHHHHHHHHHHHHHHhccCC----hhhHHH
Q 001062 377 DR--FKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR-----WLLKQEVSKIVKSINRQLREKS----IKTKVG 445 (1167)
Q Consensus 377 ~~--l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~-----~~l~~~~~~l~~~l~~~L~~~~----~~~r~~ 445 (1167)
+. ..+.+-+.|...+.++++++....-. -.+. +.....+.+-+.....++.-++ ..+...
T Consensus 505 ~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~---------V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN 575 (858)
T COG5215 505 KGTELALNESNLRVSLFSALGTLILICPDA---------VSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSN 575 (858)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHhhcchh---------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 55 35667789999999999998764310 0000 0111112222222222222111 123334
Q ss_pred HHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCch
Q 001062 446 AFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYY 525 (1167)
Q Consensus 446 ~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~ 525 (1167)
-+.++..++...++.+.+--+.++..+.+.|+... ...+..+.+..++.+..+.+ +.|..|.++++|.+.+.++..++
T Consensus 576 ~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~-~t~~~~dV~~aIsal~~sl~-e~Fe~y~~~fiPyl~~aln~~d~ 653 (858)
T COG5215 576 YIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTK-PTTAFGDVYTAISALSTSLE-ERFEQYASKFIPYLTRALNCTDR 653 (858)
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccC-CchhhhHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHhcchhH
Confidence 45677788888888887778888999999887652 34567778888888877664 68999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHH
Q 001062 526 KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLP 605 (1167)
Q Consensus 526 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~ 605 (1167)
-+...|.+.+|++...++. +|.+|.+.++..+.+.+++...+.++|-.-+++.|.++.+.|..|.+|++.++-
T Consensus 654 ~v~~~avglvgdlantl~~-------df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~ 726 (858)
T COG5215 654 FVLNSAVGLVGDLANTLGT-------DFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMM 726 (858)
T ss_pred HHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999998855 799999999999999999888888999999999999999999999999999988
Q ss_pred HHHHh--hcCc-------hhhHHHHHHHHH----HhcCC-CCCc-hhhHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHH
Q 001062 606 VLVDR--MGNE-------ITRLTAVKAFAV----IAASP-LHID-LTCVLEHVIAELTAFLRKAN--RALRQATLGTMNS 668 (1167)
Q Consensus 606 ~L~~~--L~~e-------~~r~~a~~al~~----i~~~~-~~~~-~~~~~~~~l~~L~~~L~~~~--~~lr~~al~~L~~ 668 (1167)
++... ++.+ +-|..++..+.. |..+. .+.+ +.||+..+...+...-.+++ +..-.+++..|+.
T Consensus 727 L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigD 806 (858)
T COG5215 727 LFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGD 806 (858)
T ss_pred HHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHH
Confidence 88754 2211 134455554432 11121 1121 34666655555543333222 3444789999999
Q ss_pred HHHHhCCC-----CChhhHHHHHHHHh
Q 001062 669 LVVAYGDK-----IGASAYEVIIVELS 690 (1167)
Q Consensus 669 l~~~~~~~-----~~~~~~~~~l~~l~ 690 (1167)
|+..+++. ++.+|+..++....
T Consensus 807 la~mfpkgelk~~~~~dWv~d~l~~~~ 833 (858)
T COG5215 807 LAGMFPKGELKFGLDEDWVKDFLYGMM 833 (858)
T ss_pred HHHhCCCcchhhccchHHHHHHHHHHH
Confidence 99988753 45666666655443
No 12
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.89 E-value=3.5e-17 Score=181.89 Aligned_cols=668 Identities=16% Similarity=0.195 Sum_probs=423.7
Q ss_pred cccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCC--cchhcHHHHHHHHHH
Q 001062 35 ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGK--DQHRDIASIALKTII 112 (1167)
Q Consensus 35 ~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~--~~~r~~a~~aL~~~~ 112 (1167)
+.+..++..+++|...+|+.= .-++..|..|.+.|..=+...+. ..++++++..+.+.. ++.|..-.-.|..++
T Consensus 353 ~~L~~~e~kEr~i~~llLkvK-NG~ppmRk~~LR~ltdkar~~ga---~~lfnqiLpllMs~tLeDqerhllVkvidriL 428 (1172)
T KOG0213|consen 353 PLLEDEEGKERKIMRLLLKVK-NGTPPMRKSALRILTDKARNFGA---GPLFNQILPLLMSPTLEDQERHLLVKVIDRIL 428 (1172)
T ss_pred hhcCcccccHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHhhcc---HHHHHHHHHHHcCccccchhhhhHHHHHHHHH
Confidence 444455677888888887654 45667899999988766655543 245555555444432 233444444444455
Q ss_pred hhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHH
Q 001062 113 AEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVS 192 (1167)
Q Consensus 113 ~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~ 192 (1167)
-.++. ...+++++|+-.+-..+-++ +...|...-++++.+.+.+|- ...+..+-+.+.+.++-||....+
T Consensus 429 yklDd--lvrpYVhkILvViepllide--d~yar~egreIisnLakaaGl------a~mistmrpDidn~deYVRnttar 498 (1172)
T KOG0213|consen 429 YKLDD--LVRPYVHKILVVIEPLLIDE--DYYARVEGREIISNLAKAAGL------ATMISTMRPDIDNKDEYVRNTTAR 498 (1172)
T ss_pred Hhhcc--cchhceeeeEEEeecceecc--hHHHhhchHHHHHHHHHHhhh------HHHHHhhcCCcccccHHHHHHHHH
Confidence 44443 34455555542221222222 466788888999999998885 345667778888888899999999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHH
Q 001062 193 CIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELRE 272 (1167)
Q Consensus 193 ~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re 272 (1167)
+++.++.+++-+. ++|.+....++.. +++.|.+++.+...||.-.|-..-||+..++.++-..+.+ +..-+|-
T Consensus 499 afavvasalgip~---llpfLkavc~Skk-SwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~D---e~qkVR~ 571 (1172)
T KOG0213|consen 499 AFAVVASALGIPA---LLPFLKAVCGSKK-SWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKD---EQQKVRT 571 (1172)
T ss_pred HHHHHHHHhCcHH---HHHHHHHHhcccc-chhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcc---cchhhhh
Confidence 9999999988654 4444444444432 2478999999999999999988999999999999999988 7778999
Q ss_pred HHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcch-HHHH----
Q 001062 273 YSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW-KVRR---- 347 (1167)
Q Consensus 273 ~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw-~vR~---- 347 (1167)
.+..++..+++... ||--+.++.+++-+ | .+|+
T Consensus 572 itAlalsalaeaa~----Pygie~fDsVlkpL--------------------------------------wkgir~hrgk 609 (1172)
T KOG0213|consen 572 ITALALSALAEAAT----PYGIEQFDSVLKPL--------------------------------------WKGIRQHRGK 609 (1172)
T ss_pred HHHHHHHHHHHhcC----CcchHHHHHHHHHH--------------------------------------HHHHHHccCh
Confidence 88888888887643 44333344333322 1 1232
Q ss_pred ---HHHHHHHHHHhcCChhhHHHH-HHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccC-------------
Q 001062 348 ---AAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQID------------- 410 (1167)
Q Consensus 348 ---aA~~~l~~li~~~~~~l~~~~-~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~------------- 410 (1167)
+=.++++-++--....-..+| ..++-.++.-|..++|+.+.-++..+..++...|....|.+.
T Consensus 610 ~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~r 689 (1172)
T KOG0213|consen 610 ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGR 689 (1172)
T ss_pred HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhh
Confidence 223444444332211112233 345556666688888888888888888877655532111111
Q ss_pred --CCCCch-------HHHHHHHH--HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCch-h-HhhhhhhHHHHHHhcc
Q 001062 411 --NNELNP-------RWLLKQEV--SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC-L-ADHIGSLIPGIEKSLN 477 (1167)
Q Consensus 411 --~~~~~p-------~~~l~~~~--~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~-l-~~~l~~l~~~l~~~l~ 477 (1167)
+.+--. ...+.+.+ .+++..+..-+++.++.-|.....+...++..+|.. + ......++..|+.++.
T Consensus 690 rmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afq 769 (1172)
T KOG0213|consen 690 RMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQ 769 (1172)
T ss_pred hhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 000000 00111111 334455555566777777777777777777766542 2 2346677888888888
Q ss_pred cCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccch
Q 001062 478 DKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYV 557 (1167)
Q Consensus 478 d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l 557 (1167)
.......+. +..++.+....+ ...+||+++|...++..++++.+++|+.|+.+++.+..++.... + ...+
T Consensus 770 eqtt~d~vm---l~gfg~V~~~lg-~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~-----e-e~~m 839 (1172)
T KOG0213|consen 770 EQTTEDSVM---LLGFGTVVNALG-GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCG-----E-EKLM 839 (1172)
T ss_pred hcccchhhh---hhhHHHHHHHHh-hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhcc-----H-HHHH
Confidence 764333333 445556555544 45789999999999999999999999999999999988765421 1 1123
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCc-ccccchhhhHHHHHHhhcC--chhhHHHHHHHHHHhcC-CCC
Q 001062 558 QPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD-NLGAELPACLPVLVDRMGN--EITRLTAVKAFAVIAAS-PLH 633 (1167)
Q Consensus 558 ~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~-~l~~~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~~-~~~ 633 (1167)
..+=..+.+.+. ..++||--.-+.++..++...|- ...|-...++|.|...|+| +-+.+.++..+|.|+.. +..
T Consensus 840 ~~lGvvLyEylg--eeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~ 917 (1172)
T KOG0213|consen 840 GHLGVVLYEYLG--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEY 917 (1172)
T ss_pred HHhhHHHHHhcC--cccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCccc
Confidence 333345566775 34678887777777777776652 3444445555555555544 34667899999999943 333
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhh
Q 001062 634 IDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMA 713 (1167)
Q Consensus 634 ~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~ 713 (1167)
.....|..-+. +|.+.|...+..+|.++..+++.|++..|. ++++..+...|...+++.+-.+--.++-+.+
T Consensus 918 v~aREWMRIcf-eLlelLkahkK~iRRaa~nTfG~IakaIGP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE 989 (1172)
T KOG0213|consen 918 VSAREWMRICF-ELLELLKAHKKEIRRAAVNTFGYIAKAIGP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAE 989 (1172)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHhcCH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhh
Confidence 33345665554 467788888999999999999999998873 4466667766766666665444334444333
Q ss_pred cccCCCchhhhhhhchHHHHHHHhhhcc--chhhhHHHHHHHHHHHHhccCCChHHHHHHHhhcCCCCCCCcchhhhhhH
Q 001062 714 DKRSSPNVGLAVRNKVLPQALALIKSSL--LQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMY 791 (1167)
Q Consensus 714 ~~~~~p~~~~~~~~~~l~~l~~ll~~~~--l~~~~l~~~~~~~~~l~~~~~~~~~~ll~~L~~~~~~~~~~~~~~~~a~~ 791 (1167)
.+ - .=.++|.+++-.+.|. +|...|.++..+|+.+++.+..+.-.+.+.|-.++-+ .+.++++...
T Consensus 990 ~c--~-------pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmD---rD~vhRqta~ 1057 (1172)
T KOG0213|consen 990 TC--G-------PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMD---RDLVHRQTAM 1057 (1172)
T ss_pred hc--C-------chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcc---ccHHHHHHHH
Confidence 31 1 1257899988888876 5778889998899888877654443444444444311 2224455444
Q ss_pred HHHHHH
Q 001062 792 SIAQCV 797 (1167)
Q Consensus 792 ~~a~~i 797 (1167)
++.+-+
T Consensus 1058 ~~I~Hl 1063 (1172)
T KOG0213|consen 1058 NVIKHL 1063 (1172)
T ss_pred HHHHHH
Confidence 444333
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=3.8e-15 Score=190.87 Aligned_cols=629 Identities=15% Similarity=0.136 Sum_probs=403.6
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhhhhcChhh--
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSEPR-- 81 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d-~~~~Vr~~A~~~l~~l~~~~~~~~-- 81 (1167)
.+..+.+-+.+.|++.++-|..-|.+......-..+.-.....++.+++.|.+ ++..||..|+.+|+.++..-.+..
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~ 269 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQA 269 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHH
Confidence 35566777788999999999998876654311001111234458899999964 677999999999999997532211
Q ss_pred H--HHHHHHHHHHhcCCC---------cchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHH
Q 001062 82 V--VEMTDKLCIKLLNGK---------DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECL 150 (1167)
Q Consensus 82 ~--~~l~~~L~~~~~~~~---------~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~ 150 (1167)
+ ...++.|+..+..+. ...++.+.-||.+++.+.+ .++|.|-+.+.+.. +..+..+++
T Consensus 270 Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~----------~ll~~L~~ll~s~r-d~~~~ada~ 338 (2102)
T PLN03200 270 IADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMS----------ALILYLGELSESPR-SPAPIADTL 338 (2102)
T ss_pred HHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCch----------hhHHHHHHhhcccc-hHHHHHHHH
Confidence 1 122566666655332 2347889999999997653 36666666554432 344566777
Q ss_pred HHHHHHHHHhccchhHHH----HHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcC-HHHHH--HHHHHHHHHhhcCCC
Q 001062 151 DILCDVLHKFGNLMSNDH----ERLLSALLPQLSANQA-SVRKKSVSCIASLASSLS-DDLLA--KATIEVVRNLRSKGA 222 (1167)
Q Consensus 151 ~~L~~l~~~~g~~l~~~~----~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~-~~~~~--~l~~~l~~~l~~~~~ 222 (1167)
.++..++..+...-.... ..+.+.|.+.++++++ .++.++..+|..+..... ...+. ...+.++..++..+
T Consensus 339 gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~- 417 (2102)
T PLN03200 339 GALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT- 417 (2102)
T ss_pred hhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC-
Confidence 777777665543221111 1234677788887766 468888888865433221 11111 23455666666554
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccH-HHHHHHH
Q 001062 223 KPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLT 300 (1167)
Q Consensus 223 ~~~~r~~~~~~l~~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l-~~ii~~~ 300 (1167)
.+.+..++.++..++....+...--. ...+|.+++.+.+ .+.+.++.+.+++..+............ ...++.+
T Consensus 418 -~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~L 493 (2102)
T PLN03200 418 -ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPL 493 (2102)
T ss_pred -HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 47888999999999865333211111 3368999999988 7788999999999988764332211111 1335555
Q ss_pred HHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHH--HHHhhHHHhh
Q 001062 301 LEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY--EEACPKLIDR 378 (1167)
Q Consensus 301 ~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~--~~i~p~L~~~ 378 (1167)
.+++.. + +.++|+-|+.+++.+... ++...... ..++|.|++.
T Consensus 494 V~LL~s-~---------------------------------~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~L 538 (2102)
T PLN03200 494 VQLLET-G---------------------------------SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWL 538 (2102)
T ss_pred HHHHcC-C---------------------------------CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHH
Confidence 556542 1 128899999999988764 33333333 2477888888
Q ss_pred hccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcC
Q 001062 379 FKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLP 458 (1167)
Q Consensus 379 l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~ 458 (1167)
+++.+..++..+..++..++.... .+.++. +...|...+++.+..++..++.+.....
T Consensus 539 L~sgd~~~q~~Aa~AL~nLi~~~d------------------~~~I~~----Lv~LLlsdd~~~~~~aL~vLgnIlsl~~ 596 (2102)
T PLN03200 539 LKNGGPKGQEIAAKTLTKLVRTAD------------------AATISQ----LTALLLGDLPESKVHVLDVLGHVLSVAS 596 (2102)
T ss_pred HhCCCHHHHHHHHHHHHHHHhccc------------------hhHHHH----HHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence 888888999999999988876422 122233 4455777778888888888887765443
Q ss_pred chh-H-h--hhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhh-hhHhhHHHHHHHhcCCchHHHHHHHH
Q 001062 459 DCL-A-D--HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP-YIKALSSPVLAAVGERYYKVTAEALR 533 (1167)
Q Consensus 459 ~~l-~-~--~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~ll~~l~~~l~d~~~~v~~~al~ 533 (1167)
..- . . .-...+|.+.+.+... +...+..|+.++..++.+.. +.... .....+|.++..++....+++.++..
T Consensus 597 ~~d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~-d~~~avv~agaIpPLV~LLss~~~~v~keAA~ 673 (2102)
T PLN03200 597 LEDLVREGSAANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQ-DLCESLATDEIINPCIKLLTNNTEAVATQSAR 673 (2102)
T ss_pred hhHHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCCHHHHHHHHhcCChHHHHHHHH
Confidence 321 1 0 0235678888888765 46789999999999987543 22222 33567899999999888999999999
Q ss_pred HHHHHHHhccCCccccCCCCccchH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhc
Q 001062 534 VCGELVRVLRPSVEGLGFDFKPYVQ-PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG 612 (1167)
Q Consensus 534 ~l~~l~~~~~~~~~~~~~~~~~~l~-~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~ 612 (1167)
+++.+....... .-..++. ..++.+++.++ +.+.++++.|+.+++.++......-.-.-...++.|++.|+
T Consensus 674 AL~nL~~~~~~~------q~~~~v~~GaV~pL~~LL~--~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr 745 (2102)
T PLN03200 674 ALAALSRSIKEN------RKVSYAAEDAIKPLIKLAK--SSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR 745 (2102)
T ss_pred HHHHHHhCCCHH------HHHHHHHcCCHHHHHHHHh--CCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH
Confidence 999998643221 0111222 35667777775 45678999999999999876421110011345677777775
Q ss_pred C--chhhHHHHHHHHHHhcCCCCCc-hhhHH--HHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHhC-CCCChhhHHH
Q 001062 613 N--EITRLTAVKAFAVIAASPLHID-LTCVL--EHVIAELTAFLRKANRALRQA--TLGTMNSLVVAYG-DKIGASAYEV 684 (1167)
Q Consensus 613 ~--e~~r~~a~~al~~i~~~~~~~~-~~~~~--~~~l~~L~~~L~~~~~~lr~~--al~~L~~l~~~~~-~~~~~~~~~~ 684 (1167)
. ...|+.|..++..++......+ +..++ ...+..|..+|+..|-..-.. ++..|..+++... ...+.+-+-.
T Consensus 746 ~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~ 825 (2102)
T PLN03200 746 EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAV 825 (2102)
T ss_pred hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhh
Confidence 4 4469999999999996532222 32333 346777889998877665555 8999999988532 2232221111
Q ss_pred H------HHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCc
Q 001062 685 I------IVELSTLISDSDLHMTALALELCCTLMADKRSSPN 720 (1167)
Q Consensus 685 ~------l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~ 720 (1167)
+ +..+..-+...++.+..-++++|.++|+. +|.
T Consensus 826 ~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~---~~~ 864 (2102)
T PLN03200 826 LAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD---QPV 864 (2102)
T ss_pred HHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc---Chh
Confidence 1 22222334667888899999999999998 554
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.86 E-value=7.6e-15 Score=188.17 Aligned_cols=784 Identities=14% Similarity=0.111 Sum_probs=466.6
Q ss_pred HHHHHHHHHhcCC--ChhHHhHhHHHHHHHhcccccCCChHHH---HHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcC
Q 001062 4 LQMAAILEKITGK--DKDFRYMATSDLLNELNKESFKADADLE---VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1167)
Q Consensus 4 ~~i~~ll~~~~~~--d~d~R~mAl~dL~~~l~~~~~~~~~~~~---~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~ 78 (1167)
-.+..+++++.+. +++.|..|+-.|.......... .... ...++.|+..|...+..+|..|+.++..+..+-.
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en--R~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA--RKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH--HHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 3567888998866 7888999999988777653211 0111 2367889999999999999999999998885411
Q ss_pred hh--hH-HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHH--HHHHHHHHHHHhhhccCC-ChhHHHHHHHH
Q 001062 79 EP--RV-VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQS--IHTSLTPQLTKGITLKDM-NTEIRCECLDI 152 (1167)
Q Consensus 79 ~~--~~-~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~--~~~~i~p~Ll~~l~~~~~-~~~v~~~~~~~ 152 (1167)
.. .+ ..-++-|...+.+++.+.|+.++.+|..+..+-..+..... +..-.+|.|+..+++... +..++..++-+
T Consensus 91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 11 11 23466677777788888899999999998765321111111 235567888888876421 22355666778
Q ss_pred HHHHHHHhccchhH-HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHH
Q 001062 153 LCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMI 227 (1167)
Q Consensus 153 L~~l~~~~g~~l~~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~~~r 227 (1167)
|..++.+.+..-.. .....++.+...++++++.++..|+.++..++...++. +. ...+|.+++.+++.+. ...|
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-~~VR 249 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-VSVR 249 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-hHHH
Confidence 87777654432111 11236778888888888999999999998888765543 12 2357888888875432 3689
Q ss_pred HHHHHHHHHHHHHhhhhhhcch--hhhHHHHHHHhhhcC------CCChhHHHHHHHHHHHHHHhCCccccccHHHHHHH
Q 001062 228 RTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSAS------ENDEELREYSLQALESFLLRCPRDISSYCDEILHL 299 (1167)
Q Consensus 228 ~~~~~~l~~l~~~~~~~~~p~l--~~lvp~l~~~l~~~~------e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~ 299 (1167)
+.+..+++.|+...++ ++..+ ...+|.+++.+...+ +....+++.|.+++.+++... +.+++.
T Consensus 250 E~AA~AL~nLAs~s~e-~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~--------~~ll~~ 320 (2102)
T PLN03200 250 AEAAGALEALSSQSKE-AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM--------SALILY 320 (2102)
T ss_pred HHHHHHHHHHhcCCHH-HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc--------hhhHHH
Confidence 9999999999985432 22211 345777777776411 123457899999999998654 223333
Q ss_pred HHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcC--ChhhHHHH--HHHhhHH
Q 001062 300 TLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR--PEMLSKLY--EEACPKL 375 (1167)
Q Consensus 300 ~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~--~~~l~~~~--~~i~p~L 375 (1167)
+.+.+...... .+--.++-++..++... +......+ ..+.+.|
T Consensus 321 L~~ll~s~rd~---------------------------------~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~L 367 (2102)
T PLN03200 321 LGELSESPRSP---------------------------------APIADTLGALAYALMVFDSSAESTRAFDPTVIEQIL 367 (2102)
T ss_pred HHHhhcccchH---------------------------------HHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHH
Confidence 33322110000 00111112222221111 11000111 1234666
Q ss_pred HhhhccCChhH-HHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HHHHHHHHHHhccCChhhHHHHHHHHHH
Q 001062 376 IDRFKEREENV-KMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINRQLREKSIKTKVGAFSVLRE 452 (1167)
Q Consensus 376 ~~~l~d~~~~v-r~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~l~~~l~~~L~~~~~~~r~~~~~~l~~ 452 (1167)
++.++.+++.. +..+..++..++... .+...+ ...++.+..+|...+..++..+...+..
T Consensus 368 V~Llr~k~p~~vqe~V~eALasl~gN~-----------------~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~ 430 (2102)
T PLN03200 368 VKLLKPRDTKLVQERIIEALASLYGNA-----------------YLSRKLNHAEAKKVLVGLITMATADVQEELIRALSS 430 (2102)
T ss_pred HHHhCCCCCchhHHHHHHHHHHhcCCh-----------------HHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHH
Confidence 66676665553 555556665543221 111111 3455667778877777888888888888
Q ss_pred HHHhcCchhHhh-hhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhh-HhhHHHHHHHhcCCchHHHHH
Q 001062 453 LVVVLPDCLADH-IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYI-KALSSPVLAAVGERYYKVTAE 530 (1167)
Q Consensus 453 l~~~~~~~l~~~-l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l-~~ll~~l~~~l~d~~~~v~~~ 530 (1167)
++..-.+....- -...+|.+.+.|... +...+..++..++.+..... +.-...+ .-.+|.+...+...+.+++.+
T Consensus 431 L~~~~~e~~~aIi~~ggIp~LV~LL~s~--s~~iQ~~A~~~L~nLa~~nd-enr~aIieaGaIP~LV~LL~s~~~~iqee 507 (2102)
T PLN03200 431 LCCGKGGLWEALGGREGVQLLISLLGLS--SEQQQEYAVALLAILTDEVD-ESKWAITAAGGIPPLVQLLETGSQKAKED 507 (2102)
T ss_pred HhCCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 875422221111 122477888888754 45778888989998876432 1122222 357888999998888999999
Q ss_pred HHHHHHHHHHhccCCccccCCCCccch--HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHH
Q 001062 531 ALRVCGELVRVLRPSVEGLGFDFKPYV--QPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLV 608 (1167)
Q Consensus 531 al~~l~~l~~~~~~~~~~~~~~~~~~l--~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~ 608 (1167)
|.+++++++.+ .+ .....+ ...++.+++.+++ .+.++++.|..++..++..... ..+ +.++
T Consensus 508 AawAL~NLa~~-~~-------qir~iV~~aGAIppLV~LL~s--gd~~~q~~Aa~AL~nLi~~~d~---~~I----~~Lv 570 (2102)
T PLN03200 508 SATVLWNLCCH-SE-------DIRACVESAGAVPALLWLLKN--GGPKGQEIAAKTLTKLVRTADA---ATI----SQLT 570 (2102)
T ss_pred HHHHHHHHhCC-cH-------HHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHhccch---hHH----HHHH
Confidence 99999999753 11 122223 1456677777764 4679999999999999765321 122 3344
Q ss_pred HhhcC--chhhHHHHHHHHHHhcCCCCCchh-hH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHH
Q 001062 609 DRMGN--EITRLTAVKAFAVIAASPLHIDLT-CV--LEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYE 683 (1167)
Q Consensus 609 ~~L~~--e~~r~~a~~al~~i~~~~~~~~~~-~~--~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~ 683 (1167)
+-|.. ...+..++++++.+.......++. .. -...++.|..+++.++...|+.|..+|..++.........-...
T Consensus 571 ~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~a 650 (2102)
T PLN03200 571 ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATD 650 (2102)
T ss_pred HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 44433 345677899998886432221111 10 13578999999999999999999999999987443211111112
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCc-hhhhhhhchHHHHHHHhhhcc--chhhhHHHHHHHHHHH---
Q 001062 684 VIIVELSTLISDSDLHMTALALELCCTLMADKRSSPN-VGLAVRNKVLPQALALIKSSL--LQGQALVALQSFFAAL--- 757 (1167)
Q Consensus 684 ~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~-~~~~~~~~~l~~l~~ll~~~~--l~~~~l~~~~~~~~~l--- 757 (1167)
..+..+..+++.++..++..+-.+|+.+.... ... ....+....+|.++++++++. +...++.++.+++..-
T Consensus 651 gaIpPLV~LLss~~~~v~keAA~AL~nL~~~~--~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~ 728 (2102)
T PLN03200 651 EIINPCIKLLTNNTEAVATQSARALAALSRSI--KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA 728 (2102)
T ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH
Confidence 23444556677777777777777777777542 111 122345679999999998663 2334444555544211
Q ss_pred Hhc-cCCChHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHhhcCCc-------chhHHHHHHHHHhhcCCCCchH
Q 001062 758 VYS-ANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQ-------KCSSTVKMLTDILKDDSSTNSA 829 (1167)
Q Consensus 758 ~~~-~~~~~~~ll~~L~~~~~~~~~~~~~~~~a~~~~a~~i~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~~~~~ 829 (1167)
.+. .....+.++.-|- ++++. .++ +.+.++..++...... ...+++..+...+... +.+..
T Consensus 729 ~ei~~~~~I~~Lv~lLr-----~G~~~-~k~----~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~-~~~~~ 797 (2102)
T PLN03200 729 AEALAEDIILPLTRVLR-----EGTLE-GKR----NAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST-DLDSS 797 (2102)
T ss_pred HHHHhcCcHHHHHHHHH-----hCChH-HHH----HHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC-Ccchh
Confidence 000 0112333333332 22222 123 3445555555422211 1235666677777653 22333
Q ss_pred HHHHHHHHHhhhhccC---CC--CC------ccchHHHHHHhcCCChhhHHHHHHHHHHhhhhc
Q 001062 830 KQHLALLCLGEIGRRK---DL--SS------HEHIENVIIESFQSPFEEIKSAASYALGNIAVG 882 (1167)
Q Consensus 830 ~~~lal~~Lgei~~~~---~~--~~------~~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~ 882 (1167)
...-+|..|+-+.+.. .. .. .|.-++.++..+.+.++.+...|.+.|.++|..
T Consensus 798 ~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 798 ATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 3344666666666542 11 11 244577788888888999999999999888854
No 15
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.85 E-value=4.6e-15 Score=165.29 Aligned_cols=534 Identities=15% Similarity=0.183 Sum_probs=349.9
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC---H
Q 001062 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS---D 203 (1167)
Q Consensus 127 ~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~---~ 203 (1167)
.++|.| ++++.+..+|..|+.++.+..+++.-.|....++...+++++-..+.+.+..||--++.|++.++...+ -
T Consensus 511 ~llpfL-kavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygi 589 (1172)
T KOG0213|consen 511 ALLPFL-KAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGI 589 (1172)
T ss_pred HHHHHH-HHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcch
Confidence 344443 344444458999999999999999999999889999999999999999988999999999999887654 4
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhc-chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 001062 204 DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGP-HLGDTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1167)
Q Consensus 204 ~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p-~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~ 282 (1167)
+.|+.++..+.++++.... ..--..+.++|.++--.-..... |-.++|-++..-.+. .|+|++...+..+...+
T Consensus 590 e~fDsVlkpLwkgir~hrg--k~laafLkAigyliplmd~eya~yyTrevmlil~rEf~s---PDeemkkivLKVv~qcc 664 (1172)
T KOG0213|consen 590 EQFDSVLKPLWKGIRQHRG--KELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGS---PDEEMKKIVLKVVKQCC 664 (1172)
T ss_pred HHHHHHHHHHHHHHHHccC--hHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHh
Confidence 5799999999999987544 22334556666665533223333 345778888877777 78899998888877666
Q ss_pred HhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHH------HH---H
Q 001062 283 LRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAA------KC---L 353 (1167)
Q Consensus 283 ~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~------~~---l 353 (1167)
..-+-+-.=.-.++++...+. -|. |+.|. ++ -
T Consensus 665 ~t~Gv~~~y~r~dilp~ff~~--------------------------------------fw~-rrmA~drr~ykqlv~tt 705 (1172)
T KOG0213|consen 665 ATDGVEPAYIRFDILPEFFFS--------------------------------------FWG-RRMALDRRNYKQLVDTT 705 (1172)
T ss_pred cccCCCHHHHhhhhhHHHHhh--------------------------------------hhh-hhhhccccchhhHHHHH
Confidence 543321100011222221111 122 33322 11 1
Q ss_pred HHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHH-HHHHHHHHHHHH
Q 001062 354 AALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL-KQEVSKIVKSIN 432 (1167)
Q Consensus 354 ~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l-~~~~~~l~~~l~ 432 (1167)
..+....+ ...++..++.-++|..|.-|.-+.++...++...+.. .+ +.....++..+.
T Consensus 706 v~ia~KvG------~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~--------------diderleE~lidgil 765 (1172)
T KOG0213|consen 706 VEIAAKVG------SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAA--------------DIDERLEERLIDGIL 765 (1172)
T ss_pred HHHHHHhC------chHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccc--------------cccHHHHHHHHHHHH
Confidence 11222111 1123334445578888888988888888888766531 11 112233344444
Q ss_pred HHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHh---ccCCCCchhhhh
Q 001062 433 RQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL---SSHSPPVFHPYI 509 (1167)
Q Consensus 433 ~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~---~~~~~~~~~~~l 509 (1167)
-.+........ ..+..|+..+..+++.+.+|+++|+..++..|+++ +..+|+.++.+++.++ ++++.+.. +
T Consensus 766 ~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~---m 839 (1172)
T KOG0213|consen 766 YAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKL---M 839 (1172)
T ss_pred HHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHH---H
Confidence 44433322222 34567888888889999999999999999999988 5689999999877764 45544333 3
Q ss_pred HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 001062 510 KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVI 589 (1167)
Q Consensus 510 ~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~ 589 (1167)
..+=-.+...+.+.++++....++++-.++.+++-. ...|-+..|+|.+...|++ ...+|.++.+..+|.++
T Consensus 840 ~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~------km~pPi~dllPrltPILkn--rheKVqen~IdLvg~Ia 911 (1172)
T KOG0213|consen 840 GHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT------KMTPPIKDLLPRLTPILKN--RHEKVQENCIDLVGTIA 911 (1172)
T ss_pred HHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccc------ccCCChhhhcccchHhhhh--hHHHHHHHHHHHHHHHH
Confidence 444455678888999999999999999888877542 3567788888888888875 45789999999999999
Q ss_pred HhcCccccc--chhhhHHHHHHhhc--CchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001062 590 STFGDNLGA--ELPACLPVLVDRMG--NEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGT 665 (1167)
Q Consensus 590 ~~~g~~l~~--~~~~~l~~L~~~L~--~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~ 665 (1167)
....+.++. ...-|+.+ ++.|+ +...|.+|+..+|-|+..-.. .+++..|.+.|..++|..|..+-.+
T Consensus 912 drgpE~v~aREWMRIcfeL-lelLkahkK~iRRaa~nTfG~IakaIGP-------qdVLatLlnnLkvqeRq~RvcTtva 983 (1172)
T KOG0213|consen 912 DRGPEYVSAREWMRICFEL-LELLKAHKKEIRRAAVNTFGYIAKAIGP-------QDVLATLLNNLKVQERQNRVCTTVA 983 (1172)
T ss_pred hcCcccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHhcCH-------HHHHHHHHhcchHHHHHhchhhhhh
Confidence 887665543 33333433 34443 345788999999999865322 4577888899999999999999999
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCchhhhhhhchHHHHHHHhhhcc-chh
Q 001062 666 MNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSL-LQG 744 (1167)
Q Consensus 666 L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~-l~~ 744 (1167)
++.+++.++. -.+++.+..--+.++..+.+-.|..++.+.+- ..+-...|.-.+.|-+-..+.+.. ++.
T Consensus 984 IaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGVLkalsf~Fey---igemskdYiyav~PlleDAlmDrD~vhR 1053 (1172)
T KOG0213|consen 984 IAIVAETCGP-------FTVLPALMNEYRTPEANVQNGVLKALSFMFEY---IGEMSKDYIYAVTPLLEDALMDRDLVHR 1053 (1172)
T ss_pred hhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhHHHHHHHHHHH---HHHHhhhHHHHhhHHHHHhhccccHHHH
Confidence 9988887763 12333333333445555555566666666554 333233455566666555443221 111
Q ss_pred hhHHHHHHHHHHHHhc
Q 001062 745 QALVALQSFFAALVYS 760 (1167)
Q Consensus 745 ~~l~~~~~~~~~l~~~ 760 (1167)
....+.++.++-.
T Consensus 1054 ---qta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1054 ---QTAMNVIKHLALG 1066 (1172)
T ss_pred ---HHHHHHHHHHhcC
Confidence 2345566666544
No 16
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.4e-18 Score=191.05 Aligned_cols=464 Identities=19% Similarity=0.231 Sum_probs=336.5
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcC
Q 001062 37 FKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVT 116 (1167)
Q Consensus 37 ~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~ 116 (1167)
...++.....++..++..++.|++.||.+..+|+.+++..........+.+.+.+.+..++...|..++.++..++.+..
T Consensus 87 ~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~ 166 (569)
T KOG1242|consen 87 LQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG 166 (569)
T ss_pred ccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH
Confidence 44566788899999999999999999999999999999888777777778888887777777789999999999988776
Q ss_pred CchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHH
Q 001062 117 TSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIAS 196 (1167)
Q Consensus 117 ~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~ 196 (1167)
...+.. ..++..+..++.+++ +...|+.+.-+........|..+.||.-.+++.++.++.+....||.+|..+...
T Consensus 167 i~~~~~---~~~l~~l~~ai~dk~-~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~ka 242 (569)
T KOG1242|consen 167 IESLKE---FGFLDNLSKAIIDKK-SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKA 242 (569)
T ss_pred Hhhhhh---hhHHHHHHHHhcccc-hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHH
Confidence 531111 234555666666654 3445667888888888999999999999999999999999989999999999999
Q ss_pred HHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHH
Q 001062 197 LASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQ 276 (1167)
Q Consensus 197 l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~ 276 (1167)
+..+++..-...+++.++..+.+..| ..+..+++.+|.++.+.|..+.-+++.++|-+.+.+.+ .++|+|+++..
T Consensus 243 i~~~~~~~aVK~llpsll~~l~~~kW--rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D---T~~evr~a~~~ 317 (569)
T KOG1242|consen 243 IMRCLSAYAVKLLLPSLLGSLLEAKW--RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD---TKPEVRKAGIE 317 (569)
T ss_pred HHHhcCcchhhHhhhhhHHHHHHHhh--hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc---CCHHHHHHHHH
Confidence 99999887778888888888887766 67889999999999999999999999999999999999 89999999988
Q ss_pred HHHHHHHhCC-ccccccHHHHHHHHHHhhccCCC-CCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHH
Q 001062 277 ALESFLLRCP-RDISSYCDEILHLTLEYLSYDPN-FTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLA 354 (1167)
Q Consensus 277 ~l~~l~~~~~-~~~~~~l~~ii~~~~~~l~~dp~-~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~ 354 (1167)
++-.+.+..- .++.+|+|.+++.+ .||+ +. ..|+.
T Consensus 318 ~l~~~~svidN~dI~~~ip~Lld~l-----~dp~~~~--------------------------------------~e~~~ 354 (569)
T KOG1242|consen 318 TLLKFGSVIDNPDIQKIIPTLLDAL-----ADPSCYT--------------------------------------PECLD 354 (569)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh-----cCcccch--------------------------------------HHHHH
Confidence 8777765432 13444444444332 1332 10 01121
Q ss_pred HHHhcC-ChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH
Q 001062 355 ALIVSR-PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINR 433 (1167)
Q Consensus 355 ~li~~~-~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~ 433 (1167)
.+..+. -+.+. .+-+.-+++.+.+
T Consensus 355 ~L~~ttFV~~V~-------------------------------------------------------~psLalmvpiL~R 379 (569)
T KOG1242|consen 355 SLGATTFVAEVD-------------------------------------------------------APSLALMVPILKR 379 (569)
T ss_pred hhcceeeeeeec-------------------------------------------------------chhHHHHHHHHHH
Confidence 121110 00000 0112233444444
Q ss_pred HhccCChhhHHHHHHHHHHHHHhc--CchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHh
Q 001062 434 QLREKSIKTKVGAFSVLRELVVVL--PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKA 511 (1167)
Q Consensus 434 ~L~~~~~~~r~~~~~~l~~l~~~~--~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ 511 (1167)
-+.+.+...+..+..+++.++.-- |..+++|++.++|.+...+.|. .+.+|..+...++.+.+..+...| +.
T Consensus 380 ~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f----~d 453 (569)
T KOG1242|consen 380 GLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSF----DD 453 (569)
T ss_pred HHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhcc----cc
Confidence 455544444445555566665544 5678999999999999999887 578999999999999987765555 66
Q ss_pred hHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 001062 512 LSSPVLAAVGER-YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIS 590 (1167)
Q Consensus 512 ll~~l~~~l~d~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~ 590 (1167)
..|.+...+.+. .-.-+..+...+++.+..++ .++...+++.++........+..+|..-++.+.-+-.
T Consensus 454 ~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~----------v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~ 523 (569)
T KOG1242|consen 454 LIPELSETLTSEKSLVDRSGAAQDLSEVLAGLG----------VEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPY 523 (569)
T ss_pred cccHHHHhhccchhhhhhHHHhhhHHHHHhccc----------chHHHHHHHHHHHHHhhccchhhhccCeeehhhccch
Confidence 677777776543 12223334444444443322 3577888888888877767777788877777776666
Q ss_pred hcCcccccchhhhHHHHHHhhcC--chhhHHHHHH
Q 001062 591 TFGDNLGAELPACLPVLVDRMGN--EITRLTAVKA 623 (1167)
Q Consensus 591 ~~g~~l~~~~~~~l~~L~~~L~~--e~~r~~a~~a 623 (1167)
.++..+++|+.++++.+++++.+ |..+..++++
T Consensus 524 ~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 524 IFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred hhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 66788889999999999998843 3345444443
No 17
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.81 E-value=1.8e-15 Score=165.28 Aligned_cols=655 Identities=16% Similarity=0.185 Sum_probs=390.1
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCCh-HHHHHHHHHHH-HhcCCCChhHHHHHHHHHHHhhhhcChhh--
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADA-DLEVKLSNIVV-QQLDDVAGDVSGLAVKCLAPLVKKVSEPR-- 81 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~-~~~~~i~~~ll-~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~-- 81 (1167)
+..++=|.++-.+..|--++--|.. ...++++ ...+++++.++ ..|+|+. |+..++.|..+.-++..-.
T Consensus 170 v~rllLkvKNG~~~mR~~~lRiLtd----kav~fg~~~vfnkvLp~lm~r~LeDqe---rhl~vk~idr~Ly~lddl~~p 242 (975)
T COG5181 170 VYRLLLKVKNGGKRMRMEGLRILTD----KAVNFGAAAVFNKVLPMLMSRELEDQE---RHLVVKLIDRLLYGLDDLKVP 242 (975)
T ss_pred HHHHHhhcccCCchhhHHHHHHHHH----HhhcccHHHHHHHHHHHHHhhhhhhhh---hHhHHHHHHHHHHhccccccc
Confidence 4556667777777777777666543 1222322 44566666666 3455554 4556666665543322110
Q ss_pred -----------------------HHHHHHHHHHHhc-------------CCCcchhcHHHHHHHHHHhhcCCchhHHHHH
Q 001062 82 -----------------------VVEMTDKLCIKLL-------------NGKDQHRDIASIALKTIIAEVTTSSLAQSIH 125 (1167)
Q Consensus 82 -----------------------~~~l~~~L~~~~~-------------~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~ 125 (1167)
-.+++..|..... +.++=+|...+.|...++..+.-
T Consensus 243 yvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv-------- 314 (975)
T COG5181 243 YVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV-------- 314 (975)
T ss_pred ceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc--------
Confidence 0123333332110 11222566666666666555443
Q ss_pred HHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH--
Q 001062 126 TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD-- 203 (1167)
Q Consensus 126 ~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~-- 203 (1167)
..++|-| +++..+..+|..|+.++.+..+++.-.|....++...++.++-+++.+.+..||--++.+++.++...++
T Consensus 315 ~~llpfl-~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pyg 393 (975)
T COG5181 315 EELLPFL-EALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYG 393 (975)
T ss_pred HHHHHHH-HHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcc
Confidence 3445544 4444444489999999999999999999988899999999999999998889999999999988876544
Q ss_pred -HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH-hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 001062 204 -DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA-VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESF 281 (1167)
Q Consensus 204 -~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~-~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l 281 (1167)
+.|+.++..+..+.+..... .--..+.+.|.+.-. .|+-...|-.+.|.+++..++. .|+|.+...+.
T Consensus 394 ie~fd~vl~pLw~g~~~hrgk--~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~s---pdeemkk~~l~----- 463 (975)
T COG5181 394 IEQFDEVLCPLWEGASQHRGK--ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKS---PDEEMKKDLLV----- 463 (975)
T ss_pred hHHHHHHHHHHHHHHHhcCCc--hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCC---chhhcchhHHH-----
Confidence 57999999999888765432 222334444444322 2333444556677777777766 55554332211
Q ss_pred HHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCC
Q 001062 282 LLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP 361 (1167)
Q Consensus 282 ~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~ 361 (1167)
+...|-+ -+.++.|+.|.- ..|
T Consensus 464 --------------v~~~C~~----------------------------------v~~~tp~~lr~~----------v~p 485 (975)
T COG5181 464 --------------VERICDK----------------------------------VGTDTPWKLRDQ----------VSP 485 (975)
T ss_pred --------------HHHHHhc----------------------------------cCCCCHHHHHHh----------hcH
Confidence 1111100 012346776642 122
Q ss_pred hhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChh
Q 001062 362 EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIK 441 (1167)
Q Consensus 362 ~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~ 441 (1167)
+.+..+|..-. -.||- .-+ .+..+-..+.+..+ -|.++..+...++++.++
T Consensus 486 efF~~fw~rr~------A~dr~-~~k-~v~~ttvilAk~~g---------------------~~~v~~kil~~~~De~ep 536 (975)
T COG5181 486 EFFSPFWRRRS------AGDRR-SYK-QVVLTTVILAKMGG---------------------DPRVSRKILEYYSDEPEP 536 (975)
T ss_pred HhhchHHHhhh------ccccc-ccc-eeehhHHHHHHHcC---------------------ChHHHHHHHhhccCCcch
Confidence 22333332210 01110 000 00111111222221 166777778888888777
Q ss_pred hHHHHHHHHHHHHHhcCc-hh-HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHH
Q 001062 442 TKVGAFSVLRELVVVLPD-CL-ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAA 519 (1167)
Q Consensus 442 ~r~~~~~~l~~l~~~~~~-~l-~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~ 519 (1167)
-|.....+.+.++..+|. .+ ......+...++.++........+- +.+++.++.+.+ -..+||++.|+..+++.
T Consensus 537 ~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~i---l~~f~tv~vsl~-~r~kp~l~~ivStiL~~ 612 (975)
T COG5181 537 YRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLI---LPCFSTVLVSLE-FRGKPHLSMIVSTILKL 612 (975)
T ss_pred hhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEE---Eecccceeeehh-hccCcchHHHHHHHHHH
Confidence 776666666666665543 23 2335666777888887654322222 223444433322 23478999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC-ccccc
Q 001062 520 VGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG-DNLGA 598 (1167)
Q Consensus 520 l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g-~~l~~ 598 (1167)
++++.+.++..|+.+++.+..++.... + ...+..+-..+.+.+. ..++||-..-+.|+..+....+ ..++|
T Consensus 613 L~~k~p~vR~~aadl~~sl~~vlk~c~-----e-~~~l~klg~iLyE~lg--e~ypEvLgsil~Ai~~I~sv~~~~~mqp 684 (975)
T COG5181 613 LRSKPPDVRIRAADLMGSLAKVLKACG-----E-TKELAKLGNILYENLG--EDYPEVLGSILKAICSIYSVHRFRSMQP 684 (975)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHhcc-----h-HHHHHHHhHHHHHhcC--cccHHHHHHHHHHHHHHhhhhcccccCC
Confidence 999999999999999999988765421 1 1245556666677775 3467887776777776665554 34555
Q ss_pred chhhhHHHHHHhhcCc--hhhHHHHHHHHHHhc-CCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCC
Q 001062 599 ELPACLPVLVDRMGNE--ITRLTAVKAFAVIAA-SPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGD 675 (1167)
Q Consensus 599 ~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~-~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~ 675 (1167)
-...++|.|...|+|. .....++..+|.|+. ++.......|..-+. +|.+.|.+.|..+|.+|..+++.|.+..|.
T Consensus 685 Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcf-eLvd~Lks~nKeiRR~A~~tfG~Is~aiGP 763 (975)
T COG5181 685 PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICF-ELVDSLKSWNKEIRRNATETFGCISRAIGP 763 (975)
T ss_pred chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHhhHHHHHhhhhhhhhHHhhcCH
Confidence 5555555555555543 345678999999994 443334455665444 467788888999999999999999998873
Q ss_pred CCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCchhhhhhhchHHHHHHHhhhcc--chhhhHHHHHHH
Q 001062 676 KIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSL--LQGQALVALQSF 753 (1167)
Q Consensus 676 ~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~--l~~~~l~~~~~~ 753 (1167)
++++..+...+...+++.+-.+--.++-+.+. .. .=.++|.++.-..+|. +|...|.++.-+
T Consensus 764 -------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~---cg------pfsVlP~lm~dY~TPe~nVQnGvLkam~fm 827 (975)
T COG5181 764 -------QDVLDILLNNLKVQERQQRVCTSVAISIVAEY---CG------PFSVLPTLMSDYETPEANVQNGVLKAMCFM 827 (975)
T ss_pred -------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh---cC------chhhHHHHHhcccCchhHHHHhHHHHHHHH
Confidence 45677777777666776654433333333333 10 1257888887777775 577788888888
Q ss_pred HHHHHhccCCChHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHhhcC
Q 001062 754 FAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAG 805 (1167)
Q Consensus 754 ~~~l~~~~~~~~~~ll~~L~~~~~~~~~~~~~~~~a~~~~a~~i~~~~~~~~ 805 (1167)
|+.+++....+.-.+.+.|-.++.+ .+.++++...++-+-+..-|.+.|
T Consensus 828 Feyig~~s~dYvy~itPlleDAltD---rD~vhRqta~nvI~Hl~Lnc~gtg 876 (975)
T COG5181 828 FEYIGQASLDYVYSITPLLEDALTD---RDPVHRQTAMNVIRHLVLNCPGTG 876 (975)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhcc---cchHHHHHHHHHHHHHhcCCCCcc
Confidence 8888876644443344444444422 223446655555554444444444
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=7.3e-16 Score=172.54 Aligned_cols=521 Identities=16% Similarity=0.200 Sum_probs=345.3
Q ss_pred CCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCC-CcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 001062 56 DDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTK 134 (1167)
Q Consensus 56 ~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~ 134 (1167)
.|++..|++.-.+........-+.+++..+.+---+.+.+. +...|.....--.....+... ..+-...++..+++
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~---~d~~~~~~~~~~~~ 103 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQI---VDPRPISIIEILLE 103 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccc---cCcchhHHHHHHHH
Confidence 78999998877666665555555555666665555555432 222333222211111112211 11223456667777
Q ss_pred hhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH--HHHHHH
Q 001062 135 GITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL--AKATIE 212 (1167)
Q Consensus 135 ~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~--~~l~~~ 212 (1167)
.+..+ .+.++.....+|..+....... ......+.+.+.++.....-|+.+...+..+....+-..+ ..++..
T Consensus 104 ~~~tp--s~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~ 178 (569)
T KOG1242|consen 104 ELDTP--SKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDN 178 (569)
T ss_pred hcCCC--cHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHH
Confidence 66665 5788888888887776554443 2334455555666666678888888888888876655433 235666
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcc-ccc
Q 001062 213 VVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD-ISS 291 (1167)
Q Consensus 213 l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~-~~~ 291 (1167)
+...+++.+. ...|+.+..++.......|..+.||+..++|.++..+.+ ...++|+++..+...+....+.. ++.
T Consensus 179 l~~ai~dk~~-~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d---~~~~Vr~Aa~~a~kai~~~~~~~aVK~ 254 (569)
T KOG1242|consen 179 LSKAIIDKKS-ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGD---KINKVREAAVEAAKAIMRCLSAYAVKL 254 (569)
T ss_pred HHHHhcccch-hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhc---cchhhhHHHHHHHHHHHHhcCcchhhH
Confidence 6666666543 355667889999999999999999999999999999888 78899999999999888876543 333
Q ss_pred cHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 001062 292 YCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEA 371 (1167)
Q Consensus 292 ~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i 371 (1167)
+++.++.-+. +..|+-..+|+..++.+..+.|..+...++.+
T Consensus 255 llpsll~~l~--------------------------------------~~kWrtK~aslellg~m~~~ap~qLs~~lp~i 296 (569)
T KOG1242|consen 255 LLPSLLGSLL--------------------------------------EAKWRTKMASLELLGAMADCAPKQLSLCLPDL 296 (569)
T ss_pred hhhhhHHHHH--------------------------------------HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHh
Confidence 4444333221 12799999999999999999999999999999
Q ss_pred hhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 001062 372 CPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLR 451 (1167)
Q Consensus 372 ~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~ 451 (1167)
+|.+.+.+.|....||.+...++..+.....+ ..++. +++.+...+.+++.++. .|+..|+
T Consensus 297 iP~lsevl~DT~~evr~a~~~~l~~~~svidN--------------~dI~~----~ip~Lld~l~dp~~~~~-e~~~~L~ 357 (569)
T KOG1242|consen 297 IPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN--------------PDIQK----IIPTLLDALADPSCYTP-ECLDSLG 357 (569)
T ss_pred hHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc--------------HHHHH----HHHHHHHHhcCcccchH-HHHHhhc
Confidence 99999999999999999998888777665542 23444 44555566667654444 3333332
Q ss_pred --HHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccC-CCCchhhhhHhhHHHHHHHhcCCchHHH
Q 001062 452 --ELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH-SPPVFHPYIKALSSPVLAAVGERYYKVT 528 (1167)
Q Consensus 452 --~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~-~~~~~~~~l~~ll~~l~~~l~d~~~~v~ 528 (1167)
+++... -.+.+.-++|.+.+.+++++ ...+..+...++.+++-. .+..+.||++.|+|.+...+.|..+++|
T Consensus 358 ~ttFV~~V---~~psLalmvpiL~R~l~eRs--t~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR 432 (569)
T KOG1242|consen 358 ATTFVAEV---DAPSLALMVPILKRGLAERS--TSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVR 432 (569)
T ss_pred ceeeeeee---cchhHHHHHHHHHHHHhhcc--chhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHH
Confidence 222211 13568899999999999884 355566666666666544 5778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHH
Q 001062 529 AEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLV 608 (1167)
Q Consensus 529 ~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~ 608 (1167)
..+.++++.+.+.++.. +++...|.+.+.+... ....-|..+...++.++...|. .++..+++.+.
T Consensus 433 ~vaarAL~~l~e~~g~~----------~f~d~~p~l~e~~~~~-k~~~~~~g~aq~l~evl~~~~v---~~~~~~~~~~~ 498 (569)
T KOG1242|consen 433 AVAARALGALLERLGEV----------SFDDLIPELSETLTSE-KSLVDRSGAAQDLSEVLAGLGV---EKVEDILPEIL 498 (569)
T ss_pred HHHHHHHHHHHHHHHhh----------cccccccHHHHhhccc-hhhhhhHHHhhhHHHHHhcccc---hHHHHHHHHHH
Confidence 99999999999987653 2255555555555322 2223356666777777765543 34556666555
Q ss_pred HhhcC----chhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001062 609 DRMGN----EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGT 665 (1167)
Q Consensus 609 ~~L~~----e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~ 665 (1167)
....+ +..|..-+..+.-+ -.....++++|+..+++.+...+.+.++..+..+++.
T Consensus 499 a~~~~~~~~~~~~dg~~~~~~~l-p~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 499 ANASSVLIDERIRDGVIWLFYLL-PYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred HHHhhccchhhhccCeeehhhcc-chhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 43221 11222222222111 0112245688999999988888877777766655554
No 19
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.77 E-value=1.2e-13 Score=151.24 Aligned_cols=727 Identities=11% Similarity=0.106 Sum_probs=407.0
Q ss_pred hhcCChHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHH
Q 001062 178 QLSANQASVRKKSVSCIASLASSLSDD-LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVL 256 (1167)
Q Consensus 178 ~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l 256 (1167)
..++.....|+.+++-|.-=+...+.+ +|+++++.++..--+ +..|...+.++-.+....++--.||...|+=.+
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~Le----Dqerhl~vk~idr~Ly~lddl~~pyvhkILvVv 251 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELE----DQERHLVVKLIDRLLYGLDDLKVPYVHKILVVV 251 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh----hhhhHhHHHHHHHHHHhcccccccceeeEEEEe
Confidence 456777789999999998888777776 789999888765322 245777888888898888887788887765443
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCC
Q 001062 257 IDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYT 336 (1167)
Q Consensus 257 ~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~ 336 (1167)
-..+-+ +|...|-..-+.+.+++.+|+-.+ .+..|. |++. ..|+
T Consensus 252 ~pllid---ed~~~r~~g~eii~nL~~~~Gl~~----------~vs~mr--pDi~-------------------~~de-- 295 (975)
T COG5181 252 GPLLID---EDLKRRCMGREIILNLVYRCGLGF----------SVSSMR--PDIT-------------------SKDE-- 295 (975)
T ss_pred eccccC---ccHHHhcccHHHHHHHHHHhccce----------eeeecc--CCcc-------------------cccH--
Confidence 333334 566666555566667777765221 111111 2110 0111
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccC-ChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCc
Q 001062 337 DDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKER-EENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415 (1167)
Q Consensus 337 dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 415 (1167)
-||..-.++.+.++...+ .+.++|.|-..-..| .|.-|...+.+...+....|.
T Consensus 296 -------YVRnvt~ra~~vva~alg------v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~------------ 350 (975)
T COG5181 296 -------YVRNVTGRAVGVVADALG------VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGR------------ 350 (975)
T ss_pred -------HHHHHHHHHHHHHHHhhC------cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCc------------
Confidence 589988889888888765 344555543333455 788888888888888777663
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHH
Q 001062 416 PRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRL 495 (1167)
Q Consensus 416 p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~ 495 (1167)
..-+++..+++.+.+.+.+.+..+|..+...++.+++..++.-...++.++..+-+..+... ...-..-+.+.+.
T Consensus 351 ---s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hr--gk~l~sfLkA~g~ 425 (975)
T COG5181 351 ---SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHR--GKELVSFLKAMGF 425 (975)
T ss_pred ---cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcC--CchHHHHHHHhcc
Confidence 23467889999999999999999999988899999987655444556666666655544221 1122222333333
Q ss_pred HhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhc----C
Q 001062 496 VLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN----Q 571 (1167)
Q Consensus 496 l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~----~ 571 (1167)
++--++|+...-+-...+..+..-++.++-+..-.- ..+...|...+... -.-+.+++.|.+++..-. .
T Consensus 426 iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~-l~v~~~C~~v~~~t------p~~lr~~v~pefF~~fw~rr~A~ 498 (975)
T COG5181 426 IIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDL-LVVERICDKVGTDT------PWKLRDQVSPEFFSPFWRRRSAG 498 (975)
T ss_pred ccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhH-HHHHHHHhccCCCC------HHHHHHhhcHHhhchHHHhhhcc
Confidence 443334443333445566666666665544333322 22333333333221 011222333322222110 0
Q ss_pred C------------------CCHHH---------------HHHHHHHHHHHHHhcCc-cccc-chhhhHHHHHHhhcCchh
Q 001062 572 D------------------QDQEV---------------KECAISCMGLVISTFGD-NLGA-ELPACLPVLVDRMGNEIT 616 (1167)
Q Consensus 572 d------------------~~~~v---------------r~~Ai~alg~l~~~~g~-~l~~-~~~~~l~~L~~~L~~e~~ 616 (1167)
| .++.+ |.-+......++..+|. .+.. ....++.-++..++...+
T Consensus 499 dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~ 578 (975)
T COG5181 499 DRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT 578 (975)
T ss_pred cccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc
Confidence 0 01111 11122222222222221 1111 011111111111111110
Q ss_pred -hHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCC
Q 001062 617 -RLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISD 695 (1167)
Q Consensus 617 -r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~ 695 (1167)
-..-+.+++.+..+. .....||++.++..+...|++..+.+|..++...+.|+.-..+.-..+.+..+=..+...+..
T Consensus 579 t~~~il~~f~tv~vsl-~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge 657 (975)
T COG5181 579 TVGLILPCFSTVLVSL-EFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGE 657 (975)
T ss_pred cccEEEecccceeeeh-hhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCc
Confidence 001112222222110 112268999999999999999989999999988877765433222233444444446677777
Q ss_pred CchhhHHHHHHHHHHHhhcccCCC-chhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccCCChHHHHHHHhh
Q 001062 696 SDLHMTALALELCCTLMADKRSSP-NVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLS 774 (1167)
Q Consensus 696 ~d~~~~~~al~~l~~l~~~~~~~p-~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~ll~~L~~ 774 (1167)
.++.+.+..+.++..+... .. ...++-...++|.+.-+++.. +...-.....+++.++..++.+.+
T Consensus 658 ~ypEvLgsil~Ai~~I~sv---~~~~~mqpPi~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~~peyi~-------- 724 (975)
T COG5181 658 DYPEVLGSILKAICSIYSV---HRFRSMQPPISGILPSLTPILRNK--HQKVVANTIALVGTICMNSPEYIG-------- 724 (975)
T ss_pred ccHHHHHHHHHHHHHHhhh---hcccccCCchhhccccccHhhhhh--hHHHhhhHHHHHHHHHhcCcccCC--------
Confidence 8888888888888777654 11 001112344566665555543 122223344555555544432110
Q ss_pred cCCCCCCCcchhhhhhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCCCccchH
Q 001062 775 SAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIE 854 (1167)
Q Consensus 775 ~~~~~~~~~~~~~~a~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~ 854 (1167)
.++.. . +-..++..+++ -+...|--|-.++|.|.+..+. .++.
T Consensus 725 ----------~rEWM---------R------------IcfeLvd~Lks---~nKeiRR~A~~tfG~Is~aiGP---qdvL 767 (975)
T COG5181 725 ----------VREWM---------R------------ICFELVDSLKS---WNKEIRRNATETFGCISRAIGP---QDVL 767 (975)
T ss_pred ----------HHHHH---------H------------HHHHHHHHHHH---hhHHHHHhhhhhhhhHHhhcCH---HHHH
Confidence 00110 0 11123333333 1233455567788888888766 5789
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhhhhcC-cccchHHHHHHhhc-ccchhHHHHHHHHHHHhhccccchhhhhHHHHHHH
Q 001062 855 NVIIESFQSPFEEIKSAASYALGNIAVGN-LSKFLPFILDQIDN-QQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKIL 932 (1167)
Q Consensus 855 ~~l~~~l~~~~e~vr~aaa~aLG~l~~~~-~~~~lp~l~~~l~~-~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~i~ 932 (1167)
..++..|+..+...|.+.+.|+|-++..+ |-..+|.++..... +...|.-+|.|+..+....+. +...|+-.|.
T Consensus 768 ~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~----~s~dYvy~it 843 (975)
T COG5181 768 DILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQ----ASLDYVYSIT 843 (975)
T ss_pred HHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHH----HHHHHHHHhh
Confidence 99999999999999999999999887654 34589999988876 456678888888888776665 2345677777
Q ss_pred HHHHhhccCCccchhhHHHHHhhhccccCcc--------cchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhh
Q 001062 933 NLLFNHCESEEEGVRNVVAECLGKIALIEPA--------KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIF 1004 (1167)
Q Consensus 933 ~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~~~--------~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~ 1004 (1167)
+.|-++.-+.+..-|..++-.+-.++++.|. +++..|-..+-.++|.+ +.++++.+.. +.+.|.
T Consensus 844 PlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhv----i~~~~Eg~e~----~~~~lg 915 (975)
T COG5181 844 PLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHV----IQSFDEGMES----FATVLG 915 (975)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHH----HHHHHHHHHH----HHHHhc
Confidence 7666666555555577777777777776542 22222222223334432 3333322211 111111
Q ss_pred --HhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchh
Q 001062 1005 --PEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLL 1044 (1167)
Q Consensus 1005 --~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~~l 1044 (1167)
.++.-+.++|..++..||+.=+...+.+-+-..+...|++
T Consensus 916 ~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~damvp~y 957 (975)
T COG5181 916 SGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCY 957 (975)
T ss_pred cHHHHHHHHHhccCchHHHHHHHHHHHhhhhhcccccccccc
Confidence 1333455678888888888777777777666555554444
No 20
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=4.7e-14 Score=169.87 Aligned_cols=576 Identities=16% Similarity=0.153 Sum_probs=359.3
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCC-hHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhH
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKAD-ADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV 82 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~-~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~ 82 (1167)
+....+..+..|+.|-+|.+++-=|...+++-..+.. .-..++|.......|.|.+.-+|..|.+=+|-.-.--...--
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH
Confidence 3455666778999999999998877777765331111 135677888889999999999999999988743322111222
Q ss_pred HHHHHHHHHHhcCCC----------------------------------------------------------cchhcHH
Q 001062 83 VEMTDKLCIKLLNGK----------------------------------------------------------DQHRDIA 104 (1167)
Q Consensus 83 ~~l~~~L~~~~~~~~----------------------------------------------------------~~~r~~a 104 (1167)
..+++.|...+..++ +.-|.+|
T Consensus 898 ~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~Ga 977 (1702)
T KOG0915|consen 898 KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGA 977 (1702)
T ss_pred HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccch
Confidence 334444443332110 1224578
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChH
Q 001062 105 SIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA 184 (1167)
Q Consensus 105 ~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~ 184 (1167)
+.|++++.++... -.+++.+.++|+|...=- +++..|+....+++..++..-...+..|..+|++-|+..+++..|
T Consensus 978 AfGf~~i~~~a~~--kl~p~l~kLIPrLyRY~y--DP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kew 1053 (1702)
T KOG0915|consen 978 AFGFGAIAKQAGE--KLEPYLKKLIPRLYRYQY--DPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEW 1053 (1702)
T ss_pred hhchHHHHHHHHH--hhhhHHHHhhHHHhhhcc--CCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhH
Confidence 8888888776643 467899999999987533 346889999999999999888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcC--CCChHHHHHH---HHHHHHHHHHh-----hhhhhcchhhhHH
Q 001062 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSK--GAKPEMIRTN---IQMVGALSRAV-----GYRFGPHLGDTVP 254 (1167)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~r~~~---~~~l~~l~~~~-----~~~~~p~l~~lvp 254 (1167)
.||.+++.|+.-+...-+.+.+.+-+|.++..+-.. +-++.+|+.+ ..+++.++-.. |.+=...+..++|
T Consensus 1054 RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLP 1133 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILP 1133 (1702)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHH
Confidence 999999999999999887776666666665554221 1123566655 44455444332 2233446788899
Q ss_pred HHHHH-hhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcC
Q 001062 255 VLIDY-CTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESAN 333 (1167)
Q Consensus 255 ~l~~~-l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~ 333 (1167)
+++.. +-. .-+|+|..++.++..++...|+.++||++++++.++.... ++ ++
T Consensus 1134 fLl~~gims---~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s--~l-----------------E~----- 1186 (1702)
T KOG0915|consen 1134 FLLDEGIMS---KVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS--EL-----------------EP----- 1186 (1702)
T ss_pred HHhccCccc---chHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc--cc-----------------ch-----
Confidence 88852 223 5689999999999999999999999999999999987643 21 00
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHH-HHHHHHHHHHHHhhCCCCCCccCCC
Q 001062 334 EYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVK-MDVFNTFIELVRQTGNVTKGQIDNN 412 (1167)
Q Consensus 334 ~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr-~~~~~~l~~l~~~~~~~~~~~~~~~ 412 (1167)
..+---|+++.+ .=...+..+... .++ .-.++++..+++...
T Consensus 1187 ---------~vLnYls~r~~~------------~e~ealDt~R~s------~aksspmmeTi~~ci~~iD---------- 1229 (1702)
T KOG0915|consen 1187 ---------QVLNYLSLRLIN------------IETEALDTLRAS------AAKSSPMMETINKCINYID---------- 1229 (1702)
T ss_pred ---------HHHHHHHHhhhh------------hHHHHHHHHHHh------hhcCCcHHHHHHHHHHhhh----------
Confidence 011111111100 000000000000 000 012445555555432
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHH
Q 001062 413 ELNPRWLLKQEVSKIVKSINRQLREK-SIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALT 491 (1167)
Q Consensus 413 ~~~p~~~l~~~~~~l~~~l~~~L~~~-~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~ 491 (1167)
...+.+.+|.+. +.+++. .-.+|.+|..++..|+..++..+.||...++..++..++|+ ++.++..-..
T Consensus 1230 ----~~vLeelip~l~----el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dR--Nesv~kafAs 1299 (1702)
T KOG0915|consen 1230 ----ISVLEELIPRLT----ELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDR--NESVRKAFAS 1299 (1702)
T ss_pred ----HHHHHHHHHHHH----HHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccc--cHHHHHHHHH
Confidence 123444445544 444433 45688899999999999999999999999999999999998 4577777777
Q ss_pred HHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcC
Q 001062 492 FTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ 571 (1167)
Q Consensus 492 ~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~ 571 (1167)
+.+-+++..+++.++.++..++..+.....+.+ ++ +..+...+..+.. ..+..|...++|.++=.....
T Consensus 1300 AmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-si---scatis~Ian~s~-------e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1300 AMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-SI---SCATISNIANYSQ-------EMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-ch---hHHHHHHHHHhhH-------HHHHhhHHHHHHHHHHHHhHH
Confidence 888888887777787777777766665443333 33 3344444443322 236778899999875433211
Q ss_pred -CCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCch---hhHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 001062 572 -DQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEI---TRLTAVKAFAVIAASPLHIDLTCVLEHVIAEL 647 (1167)
Q Consensus 572 -d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~---~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L 647 (1167)
...++.+. ..+.+++......+.-+..+++..+++...++. .|..+.+++-.++......--.|++..+...+
T Consensus 1369 ~Ka~q~Lw~---dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~l 1445 (1702)
T KOG0915|consen 1369 EKANQELWN---DVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSL 1445 (1702)
T ss_pred HHHHHHHHH---HHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHH
Confidence 00112221 123333222111222277888888887765554 46667777776663211100134554455545
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Q 001062 648 TAFLRKANRALRQATLGTMNSLVV 671 (1167)
Q Consensus 648 ~~~L~~~~~~lr~~al~~L~~l~~ 671 (1167)
...+...-+.-++-.+.++...+.
T Consensus 1446 l~~L~GRiwdGKe~iLKAl~~~~~ 1469 (1702)
T KOG0915|consen 1446 LDTLNGRIWDGKEEILKALASAFE 1469 (1702)
T ss_pred HHHhhccccccHHHHHHHHHHHHH
Confidence 444444344444445555554433
No 21
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=6.4e-11 Score=143.47 Aligned_cols=557 Identities=17% Similarity=0.207 Sum_probs=360.4
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh-hh----HHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcC
Q 001062 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-PR----VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVT 116 (1167)
Q Consensus 42 ~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~-~~----~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~ 116 (1167)
.....+...+.+.+.|||+.+|++++--+=.++++++. +. ..++.......+.+.++-.+|+|+.||+-+-+ +.
T Consensus 814 ~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYe-lg 892 (1702)
T KOG0915|consen 814 TRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYE-LG 892 (1702)
T ss_pred ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEe-cC
Confidence 45566677888899999999999998888788887762 21 34455555555556666678999998876543 33
Q ss_pred CchhHHHHHHHHHHHHHHhhhccC----------------CChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhc
Q 001062 117 TSSLAQSIHTSLTPQLTKGITLKD----------------MNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLS 180 (1167)
Q Consensus 117 ~~~~~~~~~~~i~p~Ll~~l~~~~----------------~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~ 180 (1167)
..+.....++.++..|..|=.+.. +...-+...+.=|..++...| .|.++=.+|+.-+
T Consensus 893 d~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~------qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 893 DSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG------QPDLVYKFMQLAN 966 (1702)
T ss_pred CchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC------ChHHHHHHHHHhh
Confidence 323445556666666654211100 000001222222233333333 3677777887766
Q ss_pred CC-hHHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHH
Q 001062 181 AN-QASVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVL 256 (1167)
Q Consensus 181 ~~-~~~vrk~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l 256 (1167)
+. .|.=|+.|+-+++.++...+++ ++.+++|.+...=-+|+. .+++.....|+++..-.......|+.+|..-+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~--~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDK--KVQDAMTSIWNALITDSKKVVDEYLNEILDEL 1044 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcH--HHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 53 4688999999999999888776 588888888887667754 67888899999998765566788999999999
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHHhCCcc-ccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCC
Q 001062 257 IDYCTSASENDEELREYSLQALESFLLRCPRD-ISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEY 335 (1167)
Q Consensus 257 ~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~-~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~ 335 (1167)
+..+++ ..=.+||++..++..++..-|.+ +...++++-..+.+.+.
T Consensus 1045 L~~lt~---kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD------------------------------ 1091 (1702)
T KOG0915|consen 1045 LVNLTS---KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD------------------------------ 1091 (1702)
T ss_pred HHhccc---hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH------------------------------
Confidence 988887 66789999999999999987753 55677777776666541
Q ss_pred CCCCCcchHHHHHHHHHHHHHHh---c-----CChhhHHHHHHHhhHHHhh-hccCChhHHHHHHHHHHHHHHhhCCCCC
Q 001062 336 TDDEDASWKVRRAAAKCLAALIV---S-----RPEMLSKLYEEACPKLIDR-FKEREENVKMDVFNTFIELVRQTGNVTK 406 (1167)
Q Consensus 336 ~dddd~sw~vR~aA~~~l~~li~---~-----~~~~l~~~~~~i~p~L~~~-l~d~~~~vr~~~~~~l~~l~~~~~~~~~ 406 (1167)
|..-.||+||-++...+.+ . .+..-.+....++|.|++. +....++||.-.+.++..++++.|
T Consensus 1092 ----DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg---- 1163 (1702)
T KOG0915|consen 1092 ----DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG---- 1163 (1702)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch----
Confidence 1111799998766555433 2 1233346888899999865 447789999999999999999876
Q ss_pred CccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhh------H-----HHHHHHH--------------HHHHHhcCchh
Q 001062 407 GQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKT------K-----VGAFSVL--------------RELVVVLPDCL 461 (1167)
Q Consensus 407 ~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~------r-----~~~~~~l--------------~~l~~~~~~~l 461 (1167)
..+.++.|.+++.+......-.+.+ | ..++..+ ..++....
T Consensus 1164 -----------~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD--- 1229 (1702)
T KOG0915|consen 1164 -----------KELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID--- 1229 (1702)
T ss_pred -----------hhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh---
Confidence 3567777888877776665432211 1 1222222 11111111
Q ss_pred HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 001062 462 ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRV 541 (1167)
Q Consensus 462 ~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~ 541 (1167)
..-+.+++|.+.+.++..- .-..|..+..++..+...++ ..+.||..+++..++..+.|++..++..--.++|.+++.
T Consensus 1230 ~~vLeelip~l~el~R~sV-gl~Tkvg~A~fI~~L~~r~~-~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1230 ISVLEELIPRLTELVRGSV-GLGTKVGCASFISLLVQRLG-SEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred HHHHHHHHHHHHHHHhccC-CCCcchhHHHHHHHHHHHhc-cccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhc
Confidence 1237788999998887643 23457778888888887665 678999999999999999999999988877889999877
Q ss_pred ccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhH---
Q 001062 542 LRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRL--- 618 (1167)
Q Consensus 542 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~--- 618 (1167)
-.+. .+..+++.+...++.. +.+. +..+...+..+..+..+.+..+-..++|.+.=....+ .+.
T Consensus 1308 Ss~d------q~qKLie~~l~~~l~k----~es~--~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee-~Ka~q~ 1374 (1702)
T KOG0915|consen 1308 SSPD------QMQKLIETLLADLLGK----DESL--KSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE-EKANQE 1374 (1702)
T ss_pred CChH------HHHHHHHHHHHHHhcc----CCCc--cchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH-HHHHHH
Confidence 5442 2344444444433322 2211 2333333444555556777788889999775322222 111
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhCCCCC
Q 001062 619 TAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA-NRALRQATLGTMNSLVVAYGDKIG 678 (1167)
Q Consensus 619 ~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~-~~~lr~~al~~L~~l~~~~~~~~~ 678 (1167)
-=-+.+.++.... ..-+.=|...++-.++...-.+ .+.+|..+..++..++.......+
T Consensus 1375 Lw~dvW~e~vsgg-agtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~ 1434 (1702)
T KOG0915|consen 1375 LWNDVWAELVSGG-AGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAP 1434 (1702)
T ss_pred HHHHHHHHhCCCC-cchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCC
Confidence 0112333333211 1112225666666666655444 488999999998888876554444
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.58 E-value=9.9e-12 Score=151.50 Aligned_cols=476 Identities=17% Similarity=0.185 Sum_probs=320.5
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHH
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM 85 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l 85 (1167)
+..+..-+.+.|...|.++---+..... .+++...-++..+.+-|.++|+.+|..|.++++.+. .++..+.+
T Consensus 44 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~-----~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l 115 (526)
T PF01602_consen 44 FMEVIKLISSKDLELKRLGYLYLSLYLH-----EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPL 115 (526)
T ss_dssp HHHHHCTCSSSSHHHHHHHHHHHHHHTT-----TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHH
Confidence 3445555667777777655554444333 234566778899999999999999999999999886 55667788
Q ss_pred HHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHH-HHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccch
Q 001062 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTS-LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~-i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l 164 (1167)
++.+.+.+.++++.+|..|+.|+..++...|.. ++. ++|.+.+.+.++ ++.|+..|+.++.++ ++-....
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~------~~~~~~~~l~~lL~d~--~~~V~~~a~~~l~~i-~~~~~~~ 186 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL------VEDELIPKLKQLLSDK--DPSVVSAALSLLSEI-KCNDDSY 186 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC------HHGGHHHHHHHHTTHS--SHHHHHHHHHHHHHH-HCTHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH------HHHHHHHHHhhhccCC--cchhHHHHHHHHHHH-ccCcchh
Confidence 888888899999999999999999999876652 233 577777777665 589999999999999 3333322
Q ss_pred hHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh
Q 001062 165 SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY 243 (1167)
Q Consensus 165 ~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~ 243 (1167)
....+.+.+.+.+.+..+++-++...+..+..++.......- ..+++.+...+++.+ ..+ .+++...+....+.
T Consensus 187 ~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~--~~V---~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 187 KSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSS--PSV---VYEAIRLIIKLSPS 261 (526)
T ss_dssp TTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHSSS
T ss_pred hhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccc--cHH---HHHHHHHHHHhhcc
Confidence 245566667777666788888888888888877654433321 456777776666432 233 34444444443322
Q ss_pred hhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCccccc
Q 001062 244 RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAY 323 (1167)
Q Consensus 244 ~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~ 323 (1167)
. +.+..+++.+...+.+ .++.+|-.+++++..++...|..+. +..-. ..++.+|++
T Consensus 262 ~--~~~~~~~~~L~~lL~s---~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~----~~~l~~~~d-------------- 317 (526)
T PF01602_consen 262 P--ELLQKAINPLIKLLSS---SDPNVRYIALDSLSQLAQSNPPAVF-NQSLI----LFFLLYDDD-------------- 317 (526)
T ss_dssp H--HHHHHHHHHHHHHHTS---SSHHHHHHHHHHHHHHCCHCHHHHG-THHHH----HHHHHCSSS--------------
T ss_pred h--HHHHhhHHHHHHHhhc---ccchhehhHHHHHHHhhcccchhhh-hhhhh----hheecCCCC--------------
Confidence 1 1567888899998887 7888999999999998877644433 11111 122332211
Q ss_pred ccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccC-ChhHHHHHHHHHHHHHHhhC
Q 001062 324 EEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKER-EENVKMDVFNTFIELVRQTG 402 (1167)
Q Consensus 324 ~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~-~~~vr~~~~~~l~~l~~~~~ 402 (1167)
-.||+.+...+..+.... -+..+++.|.+.+++. ++.++.+++.+++.+.....
T Consensus 318 -------------------~~Ir~~~l~lL~~l~~~~------n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 318 -------------------PSIRKKALDLLYKLANES------NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp -------------------HHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred -------------------hhHHHHHHHHHhhccccc------chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence 168999999988877632 3455666666666454 66799999999998876543
Q ss_pred CCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCC
Q 001062 403 NVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSST 482 (1167)
Q Consensus 403 ~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~ 482 (1167)
+ .....++.+.+.+......+...++..+..++...|+.- ..++..+.+.+.+.. .
T Consensus 373 ~-------------------~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~----~~~l~~L~~~l~~~~-~ 428 (526)
T PF01602_consen 373 P-------------------DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR----EKILKKLIELLEDIS-S 428 (526)
T ss_dssp S-------------------SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH----HHHHHHHHHHHTSSS-S
T ss_pred c-------------------hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhh----HHHHHHHHHHHHHhh-H
Confidence 2 224556666777776666777788888888887766543 334555666665532 4
Q ss_pred chHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHH
Q 001062 483 SNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYN 562 (1167)
Q Consensus 483 ~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 562 (1167)
+..+..+++++|........ .. ....++..+...+.+....++...+.++..+....... ...+.+++
T Consensus 429 ~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~---------~~~~~i~~ 496 (526)
T PF01602_consen 429 PEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN---------EVQNEILQ 496 (526)
T ss_dssp HHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST---------THHHHHHH
T ss_pred HHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch---------hhHHHHHH
Confidence 56788888888887654331 11 45667777777777777889999999999988653321 12236666
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHH
Q 001062 563 AIMSRLTNQDQDQEVKECAISCMGLV 588 (1167)
Q Consensus 563 ~ll~~l~~~d~~~~vr~~Ai~alg~l 588 (1167)
.+.......+.+.+||++|...+.-+
T Consensus 497 ~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 497 FLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 66555543466899999998877644
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=2.5e-11 Score=132.93 Aligned_cols=429 Identities=13% Similarity=0.119 Sum_probs=297.4
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhhhhcCh----hhHHHHHHHHHHHh-cCCCcchhcHHHHHHHHHHhhcCCchhHHHH
Q 001062 50 IVVQQLDDVAGDVSGLAVKCLAPLVKKVSE----PRVVEMTDKLCIKL-LNGKDQHRDIASIALKTIIAEVTTSSLAQSI 124 (1167)
Q Consensus 50 ~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~----~~~~~l~~~L~~~~-~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~ 124 (1167)
.+.+.|.|.--|-|++|.--+..+++.+-. .++.++++.|+.-. .+++...|.+..+|+.++.-.+..+ -. .+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~-~~-~Y 81 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIK-DA-GY 81 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccc-cH-HH
Confidence 356788999999999999999999875532 35677788777644 4556666789999999988777774 22 38
Q ss_pred HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-CH
Q 001062 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL-SD 203 (1167)
Q Consensus 125 ~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~-~~ 203 (1167)
+..++|..+.-+.++ +..+|-.||+.+-.+++-....+..+++.+...+.+...+++..||..|- .+..+..-+ .+
T Consensus 82 ~~~iv~Pv~~cf~D~--d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdIVte 158 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQ--DSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDIVTE 158 (675)
T ss_pred HHHhhHHHHHhccCc--cceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHhccc
Confidence 899999999988876 47899999999999999887777789999999999999888888877653 344443322 11
Q ss_pred H----HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh-hhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHH
Q 001062 204 D----LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY-RFGPHLGDTVPVLIDYCTSASENDEELREYSLQAL 278 (1167)
Q Consensus 204 ~----~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l 278 (1167)
+ .++.++|-+-..+-..+. ..| .++--|-.+....|. .|-.|+|.+.+.+++++++ ..+|+|.-|-.++
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~--~tR-~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD---~s~eVr~~~~t~l 232 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINP--MTR-QFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSD---SSDEVRTLTDTLL 232 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCc--hHH-HHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcC---CcHHHHHHHHHHH
Confidence 1 256677777766655432 344 555556666666554 7888999999999999998 8899998887777
Q ss_pred HHHHHhCCccccccHHHHHHHHHHhhccCCCC-CCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q 001062 279 ESFLLRCPRDISSYCDEILHLTLEYLSYDPNF-TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1167)
Q Consensus 279 ~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~-~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li 357 (1167)
..|.... ..+|.. .+++ +-...-.+- -...-.++.-|..=+..++
T Consensus 233 ~~fL~eI-------------------~s~P~s~d~~~------~i~vlv~~l---------~ss~~~iq~~al~Wi~efV 278 (675)
T KOG0212|consen 233 SEFLAEI-------------------RSSPSSMDYDD------MINVLVPHL---------QSSEPEIQLKALTWIQEFV 278 (675)
T ss_pred HHHHHHH-------------------hcCccccCccc------chhhccccc---------cCCcHHHHHHHHHHHHHHh
Confidence 7665432 123321 0100 000000000 0001257777788888899
Q ss_pred hcCChhhHHHHHHHhhHHHhhhccCCh-hHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHH--HHHHHHHHHHHHH
Q 001062 358 VSRPEMLSKLYEEACPKLIDRFKEREE-NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLK--QEVSKIVKSINRQ 434 (1167)
Q Consensus 358 ~~~~~~l~~~~~~i~p~L~~~l~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~--~~~~~l~~~l~~~ 434 (1167)
...|..+-.++..++..++..+.+.++ +++..+...-+.+..-.+.. ... --+..++..+.++
T Consensus 279 ~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~--------------~~~~~id~~~ii~vl~~~ 344 (675)
T KOG0212|consen 279 KIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE--------------RLKEEIDYGSIIEVLTKY 344 (675)
T ss_pred cCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh--------------hhccccchHHHHHHHHHH
Confidence 888876667788888777777877776 35544433333333322210 001 1235889999999
Q ss_pred hccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHH
Q 001062 435 LREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSS 514 (1167)
Q Consensus 435 L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~ 514 (1167)
+.+....+|.+++.-+..+-...|+.+.-|..++++.+.+.|.|+ +..+-..++.++..++.++... +..+++.
T Consensus 345 l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~--sd~vvl~~L~lla~i~~s~~~~----~~~~fl~ 418 (675)
T KOG0212|consen 345 LSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR--SDEVVLLALSLLASICSSSNSP----NLRKFLL 418 (675)
T ss_pred hhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc--hhHHHHHHHHHHHHHhcCcccc----cHHHHHH
Confidence 999999999999999999999999999999999999999999998 4578888999999999865432 3344444
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhcc
Q 001062 515 PVLAAVGERYYKVTAEALRVCGELVRVLR 543 (1167)
Q Consensus 515 ~l~~~l~d~~~~v~~~al~~l~~l~~~~~ 543 (1167)
.++..+....--+...+-..+.++|-.+.
T Consensus 419 sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~ 447 (675)
T KOG0212|consen 419 SLLEMFKEDTKLLEVRGNLIIRQLCLLLN 447 (675)
T ss_pred HHHHHHhhhhHHHHhhhhHHHHHHHHHhC
Confidence 45554443322333345555666665443
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.3e-10 Score=127.47 Aligned_cols=391 Identities=16% Similarity=0.195 Sum_probs=274.8
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhh
Q 001062 176 LPQLSANQASVRKKSVSCIASLASSLSD----DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGD 251 (1167)
Q Consensus 176 l~~l~~~~~~vrk~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~ 251 (1167)
.+.+++.-..-||.|+.-+..+..-+-. +.+..+++.+....-.+.. ...|++++-.+.+++-..|.+-.+|+..
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~-~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPH-ANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcc-cccccchHHHHHHHHHHhccccHHHHHH
Confidence 3455555567888888888877764322 2466677766665433322 2467788888888888888888889999
Q ss_pred hHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhh
Q 001062 252 TVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDES 331 (1167)
Q Consensus 252 lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~ 331 (1167)
++|.++.++.+ .|..+|-+|.+.+-+++..+..++.+|++.++.++.+... |++
T Consensus 85 iv~Pv~~cf~D---~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa-Dsd---------------------- 138 (675)
T KOG0212|consen 85 IVPPVLNCFSD---QDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA-DSD---------------------- 138 (675)
T ss_pred hhHHHHHhccC---ccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc-CCc----------------------
Confidence 99999999998 7889999999999999999999999999999999888764 111
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHHHHhcCC----hhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCC
Q 001062 332 ANEYTDDEDASWKVRRAAAKCLAALIVSRP----EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKG 407 (1167)
Q Consensus 332 ~~~~~dddd~sw~vR~aA~~~l~~li~~~~----~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 407 (1167)
-.|| .++..+..+++... ..+ .++.++|.|-+++...++.+|.-++.-+..+-..+.
T Consensus 139 -----------~~V~-~~aeLLdRLikdIVte~~~tF--sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~----- 199 (675)
T KOG0212|consen 139 -----------QNVR-GGAELLDRLIKDIVTESASTF--SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD----- 199 (675)
T ss_pred -----------cccc-cHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-----
Confidence 0222 23344555544221 111 366788998899888899999877766655433221
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHh---cCchhHhhhhhhHHHHHHhcccCCCCch
Q 001062 408 QIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVV---LPDCLADHIGSLIPGIEKSLNDKSSTSN 484 (1167)
Q Consensus 408 ~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~---~~~~l~~~l~~l~~~l~~~l~d~~~~~~ 484 (1167)
-.+-.++|.+++.++..|.+++..+|..+=.+++++... -|..+ ..+..++.+..-+..+ .+.
T Consensus 200 ----------~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~--d~~~~i~vlv~~l~ss--~~~ 265 (675)
T KOG0212|consen 200 ----------LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM--DYDDMINVLVPHLQSS--EPE 265 (675)
T ss_pred ----------HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc--CcccchhhccccccCC--cHH
Confidence 355679999999999999999999997766655555332 24443 4566677777666544 457
Q ss_pred HHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCch-HHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHH
Q 001062 485 LKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYY-KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNA 563 (1167)
Q Consensus 485 ~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~-~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 563 (1167)
++..|+.-+..+++.. +..+.+|...++..++.++.+... .++..+..+-+.+..-++.... +++ =-+.++++.
T Consensus 266 iq~~al~Wi~efV~i~-g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~--~~~--id~~~ii~v 340 (675)
T KOG0212|consen 266 IQLKALTWIQEFVKIP-GRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERL--KEE--IDYGSIIEV 340 (675)
T ss_pred HHHHHHHHHHHHhcCC-CcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhh--ccc--cchHHHHHH
Confidence 8888888888888865 468889999999999999987765 3555555555555554433221 111 124577887
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCch--hhHHHHHHHHHHhcCCCC
Q 001062 564 IMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEI--TRLTAVKAFAVIAASPLH 633 (1167)
Q Consensus 564 ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~--~r~~a~~al~~i~~~~~~ 633 (1167)
+...+.+ ...+.|-.++.-+-.+-..++..+..+...+++.|+..|.+.. +-..++..+..+|.++..
T Consensus 341 l~~~l~~--~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 341 LTKYLSD--DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHhhc--chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 7777753 3346676666666666666677777788999999999997653 456788888888876533
No 25
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.48 E-value=6.3e-10 Score=135.71 Aligned_cols=440 Identities=14% Similarity=0.152 Sum_probs=291.0
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhc
Q 001062 168 HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGP 247 (1167)
Q Consensus 168 ~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p 247 (1167)
.......+.+.+.++++.+|..|+++++.++ ..+..+.+++.+.+.+.++++ .+|+.|+.++..+.+..|+.+.+
T Consensus 77 ~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p~~~~~ 151 (526)
T PF01602_consen 77 LILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSP--YVRKKAALALLKIYRKDPDLVED 151 (526)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSH--HHHHHHHHHHHHHHHHCHCCHHG
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCch--HHHHHHHHHHHHHhccCHHHHHH
Confidence 3446677788888999999999999998877 677788889999988887754 89999999999999988776554
Q ss_pred chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCccccccccc
Q 001062 248 HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEE 327 (1167)
Q Consensus 248 ~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~ 327 (1167)
. ++|.+.+.+.+ .++.++.+|+.++..+ ..-+....+.++.++..+.+.+. ++
T Consensus 152 ~---~~~~l~~lL~d---~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~-~~------------------- 204 (526)
T PF01602_consen 152 E---LIPKLKQLLSD---KDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLS-DP------------------- 204 (526)
T ss_dssp G---HHHHHHHHTTH---SSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHT-CC-------------------
T ss_pred H---HHHHHhhhccC---CcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhccc-cc-------------------
Confidence 3 57777777777 7888999998888877 32233333566777766666552 11
Q ss_pred chhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCC
Q 001062 328 EDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKG 407 (1167)
Q Consensus 328 d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 407 (1167)
..|- +....+++..+....+..-.. ..+++.+...+...++.|+.++..++..+...
T Consensus 205 -------------~~~~-q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~------- 261 (526)
T PF01602_consen 205 -------------DPWL-QIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS------- 261 (526)
T ss_dssp -------------SHHH-HHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-------
T ss_pred -------------chHH-HHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-------
Confidence 1353 444455554433322221100 34555665666677788887777776544211
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHH
Q 001062 408 QIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKI 487 (1167)
Q Consensus 408 ~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~ 487 (1167)
...+..+++.+.+.+.++++.+|-.++..+..++...+..+. .....+.....+. +..+|.
T Consensus 262 -------------~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----~~~~~~~~l~~~~--d~~Ir~ 322 (526)
T PF01602_consen 262 -------------PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF----NQSLILFFLLYDD--DPSIRK 322 (526)
T ss_dssp -------------HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG----THHHHHHHHHCSS--SHHHHH
T ss_pred -------------hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh----hhhhhhheecCCC--ChhHHH
Confidence 125567788888899988888999999998888766533332 2222233333244 467899
Q ss_pred HHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHH
Q 001062 488 EALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER-YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMS 566 (1167)
Q Consensus 488 ~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 566 (1167)
.++.++..++.. ..+..+++.+...+.+. +..++.+++..++.++....+ ..+..++.+++
T Consensus 323 ~~l~lL~~l~~~-------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~-----------~~~~~v~~l~~ 384 (526)
T PF01602_consen 323 KALDLLYKLANE-------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP-----------DAEWYVDTLLK 384 (526)
T ss_dssp HHHHHHHHH--H-------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS-----------SHHHHHHHHHH
T ss_pred HHHHHHhhcccc-------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc-----------hHHHHHHHHHH
Confidence 999988888752 23456788888888544 667999999999999876533 23344444445
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhh---cCchhhHHHHHHHHHHhcCCCCCchhhHHHHH
Q 001062 567 RLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM---GNEITRLTAVKAFAVIAASPLHIDLTCVLEHV 643 (1167)
Q Consensus 567 ~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L---~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~ 643 (1167)
.+.. ....+...++..+..++....+. ...++..+.+.+ ..+..+..++..+|+-+..... .. ....+
T Consensus 385 ll~~--~~~~~~~~~~~~i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~ 455 (526)
T PF01602_consen 385 LLEI--SGDYVSNEIINVIRDLLSNNPEL----REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPDI 455 (526)
T ss_dssp HHHC--TGGGCHCHHHHHHHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHH
T ss_pred hhhh--ccccccchHHHHHHHHhhcChhh----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHHH
Confidence 5542 23455777788888887663322 234455555554 3345677888999887632110 01 45666
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcC--CCchhhHHHHHHHHHHH
Q 001062 644 IAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLIS--DSDLHMTALALELCCTL 711 (1167)
Q Consensus 644 l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~--~~d~~~~~~al~~l~~l 711 (1167)
+..+.......+..+|...+.++..+....+. .+..+.+++.+..+.+ +.|..+++-|.+.++-+
T Consensus 456 ~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~---~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 456 LRSLIENFIEESPEVKLQILTALAKLFKRNPE---NEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS---TTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHhhCCc---hhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 67676666667788999999999999987763 1223467777777776 67889998888777654
No 26
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.2e-07 Score=109.76 Aligned_cols=562 Identities=18% Similarity=0.188 Sum_probs=336.8
Q ss_pred CchHHHHHHHHHhcCCChhHHhHhHHHHH----------------------------------HHhccccc---------
Q 001062 1 MANLQMAAILEKITGKDKDFRYMATSDLL----------------------------------NELNKESF--------- 37 (1167)
Q Consensus 1 ~~~~~i~~ll~~~~~~d~d~R~mAl~dL~----------------------------------~~l~~~~~--------- 37 (1167)
|....+..++..+-++||+.|-.|-..|+ |.+.+.|-
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 66677888888888888888888877776 22222221
Q ss_pred CCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCC
Q 001062 38 KADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT 117 (1167)
Q Consensus 38 ~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~ 117 (1167)
.+.++....+.+.++..+-....-+|-+=-.|+..+...=.+++|+.++++....+.+++..+--++..+|..+++....
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 13344555666777777665566777777788877776555678999999999988877665566777777776654331
Q ss_pred c-----hhHHHHHHHHHHH---------------------------------------------------HHHhhhccCC
Q 001062 118 S-----SLAQSIHTSLTPQ---------------------------------------------------LTKGITLKDM 141 (1167)
Q Consensus 118 ~-----~~~~~~~~~i~p~---------------------------------------------------Ll~~l~~~~~ 141 (1167)
. +-...++....|. ++..++.+-+
T Consensus 161 k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP 240 (1010)
T KOG1991|consen 161 KKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVP 240 (1010)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCC
Confidence 0 0011111111111 1111221110
Q ss_pred ---------------ChhHHHHHHHHHHHHHHHhccchh--------------HHHHHHHHHHhhhhc------------
Q 001062 142 ---------------NTEIRCECLDILCDVLHKFGNLMS--------------NDHERLLSALLPQLS------------ 180 (1167)
Q Consensus 142 ---------------~~~v~~~~~~~L~~l~~~~g~~l~--------------~~~~~l~~~ll~~l~------------ 180 (1167)
-|..++=|+.+|..+.+++|.--. .+.+.+++.+++.+.
T Consensus 241 ~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rv 320 (1010)
T KOG1991|consen 241 VEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRV 320 (1010)
T ss_pred hhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 123456678888888887766311 223333444443332
Q ss_pred -------------------------------------------------CChHHHHH-------------HHHHHHHHHH
Q 001062 181 -------------------------------------------------ANQASVRK-------------KSVSCIASLA 198 (1167)
Q Consensus 181 -------------------------------------------------~~~~~vrk-------------~a~~~l~~l~ 198 (1167)
+|..-+|+ +|..++-.++
T Consensus 321 l~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~ 400 (1010)
T KOG1991|consen 321 LYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLV 400 (1010)
T ss_pred HHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHH
Confidence 11224444 5667777777
Q ss_pred hhcCHHHHHHHHHHHHHHhh------cCCCChHHHHHHHHHHHHHHHHhhhhhhcch----hhhHHHHHHHhhhcCCCCh
Q 001062 199 SSLSDDLLAKATIEVVRNLR------SKGAKPEMIRTNIQMVGALSRAVGYRFGPHL----GDTVPVLIDYCTSASENDE 268 (1167)
Q Consensus 199 ~~~~~~~~~~l~~~l~~~l~------~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l----~~lvp~l~~~l~~~~e~~~ 268 (1167)
.-.+++.|+.+++.+.+.+. .++.+...+.+|+.++|++++..-++ +||- .-++++++-.+++ ...
T Consensus 401 ~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~-s~~~~~mE~flv~hVfP~f~s---~~g 476 (1010)
T KOG1991|consen 401 SKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK-SPYKSQMEYFLVNHVFPEFQS---PYG 476 (1010)
T ss_pred HhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHhhHhhcC---chh
Confidence 77777788888888888876 44445567889999999999764321 2221 1134444444455 556
Q ss_pred hHHHHHHHHHHHHHHhCCcccc--ccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHH
Q 001062 269 ELREYSLQALESFLLRCPRDIS--SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVR 346 (1167)
Q Consensus 269 e~re~al~~l~~l~~~~~~~~~--~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR 346 (1167)
-+|.-|+++++.+..- +|+ ..+.++++...+.+.-| ..--||
T Consensus 477 ~Lrarac~vl~~~~~~---df~d~~~l~~ale~t~~~l~~d---------------------------------~~lPV~ 520 (1010)
T KOG1991|consen 477 YLRARACWVLSQFSSI---DFKDPNNLSEALELTHNCLLND---------------------------------NELPVR 520 (1010)
T ss_pred HHHHHHHHHHHHHHhc---cCCChHHHHHHHHHHHHHhccC---------------------------------CcCchh
Confidence 6898899988888732 333 35566777777766521 112789
Q ss_pred HHHHHHHHHHHhcCC---hhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHH
Q 001062 347 RAAAKCLAALIVSRP---EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQE 423 (1167)
Q Consensus 347 ~aA~~~l~~li~~~~---~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~ 423 (1167)
--|+-||..++...+ +.+.++...++..|+.-.++-|-.....+++.+ +..-+- +-+|. -.+.
T Consensus 521 VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~i---V~~fse---------ElsPf--A~eL 586 (1010)
T KOG1991|consen 521 VEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKI---VCKFSE---------ELSPF--AVEL 586 (1010)
T ss_pred hHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHH---HHHHHH---------hhchh--HHHH
Confidence 899999999999775 335555555665666555666554444444332 222110 01121 1233
Q ss_pred HHHHHHHHHHHhcc---CCh--h-h---HHHHHHHHHHHHHhc---CchhHhhhhhhHHHHHHhcccCCCCchHHHHHHH
Q 001062 424 VSKIVKSINRQLRE---KSI--K-T---KVGAFSVLRELVVVL---PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALT 491 (1167)
Q Consensus 424 ~~~l~~~l~~~L~~---~~~--~-~---r~~~~~~l~~l~~~~---~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~ 491 (1167)
...+.....+.+.. .++ . . ..+++.++.++..+. |.-+..--+.+.|.+..+|... -.+.-.+++.
T Consensus 587 ~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~--i~dfyeE~~e 664 (1010)
T KOG1991|consen 587 CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKND--ITDFYEELLE 664 (1010)
T ss_pred HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 44555566666653 111 1 2 223455555555443 4334444556677777777643 2456666666
Q ss_pred HHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcC
Q 001062 492 FTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ 571 (1167)
Q Consensus 492 ~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~ 571 (1167)
++..+.-. ...+.|-+=.+++.+..++++....-..+..-++.+++.+-++.. .....|.+.++..+-..+.+.
T Consensus 665 i~~~~t~~--~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~----~s~~~y~~il~~i~~~~l~~e 738 (1010)
T KOG1991|consen 665 IVSSLTFL--SKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSL----LSNPDYLQILLEIIKKVLTSE 738 (1010)
T ss_pred HHhhhhhh--hcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhh----hccchHHHHHHHHHHHHHcCC
Confidence 55544221 234667677888999999887765555666667777765533321 122347788888887778766
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCch----hhHHHHHHH
Q 001062 572 DQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEI----TRLTAVKAF 624 (1167)
Q Consensus 572 d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~----~r~~a~~al 624 (1167)
+....-++.|..-++.++-+++..+.++++..+.+.+.+++.+. .|..+++++
T Consensus 739 ~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVv 795 (1010)
T KOG1991|consen 739 NGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVV 795 (1010)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 55555677888999999988887777788888888888886632 355555544
No 27
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=2.3e-07 Score=111.63 Aligned_cols=705 Identities=14% Similarity=0.166 Sum_probs=365.6
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCCh--HHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHh---hhhcCh
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADA--DLEVKLSNIVVQQLDDVA-GDVSGLAVKCLAPL---VKKVSE 79 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~--~~~~~i~~~ll~~L~d~~-~~Vr~~A~~~l~~l---~~~~~~ 79 (1167)
+-.++.-.-++.|-+|-||..-++..|..+.+-.+. +..-.+..-.++.+.... +.......+.|.-| ...++.
T Consensus 140 ~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~ 219 (1176)
T KOG1248|consen 140 LFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPR 219 (1176)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCH
Confidence 345566678888999999999999999976655443 222333333333333222 23333444444322 233444
Q ss_pred hhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHH
Q 001062 80 PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1167)
Q Consensus 80 ~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~ 159 (1167)
..+..+.+.|...+...+..++-.+..++..++...+.. ........++..+.+. .-...+......=+.++.....+
T Consensus 220 ~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~-l~a~~~a~lL~al~~l-~ps~~D~~~t~~W~~v~~~~~~~ 297 (1176)
T KOG1248|consen 220 PLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTA-LAAELNARLLTALMTL-SPSENDDLLTVAWLKVLNEAHDI 297 (1176)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCc-chHHHHHHHHHHHHHh-CCCccchHHHHHHHHHHHHHHHH
Confidence 444444444444444444445666677777777766652 2222222222222211 00000111111222222222222
Q ss_pred hcc---ch-hHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001062 160 FGN---LM-SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVG 235 (1167)
Q Consensus 160 ~g~---~l-~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~ 235 (1167)
+.. .. -...+.+.+.+...+.++...+-..|-+|+..+..-... +.+.+-...+..+.+-.. ...-+.+++.+.
T Consensus 298 la~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf-~~~~~~ilqi~s 375 (1176)
T KOG1248|consen 298 LATLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKF-HAVWRFILQILS 375 (1176)
T ss_pred HHHhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchH-HHHHHHHHHHHH
Confidence 111 11 145667777777777677666666677777766643332 222222222222222221 234557899999
Q ss_pred HHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccc-ccH-------------HHHHHHHH
Q 001062 236 ALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS-SYC-------------DEILHLTL 301 (1167)
Q Consensus 236 ~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~-~~l-------------~~ii~~~~ 301 (1167)
.++..||+..+||+...+..+-.. ... +|..-+..--+++++.+..+|.+.- ..+ .=++|++.
T Consensus 376 ~~fek~G~~s~~~l~~~L~~l~~l-r~~--~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR 452 (1176)
T KOG1248|consen 376 ALFEKCGELSGPELTKTLEGLCDL-RAS--PDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLR 452 (1176)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHh-hcC--CCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHH
Confidence 999999999999887766665542 221 2222233344555666655543210 000 00122222
Q ss_pred HhhccCCCCCCCCCCC-Ccccc----cccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcC------ChhhHHHHHH
Q 001062 302 EYLSYDPNFTDNMEED-SDDEA----YEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR------PEMLSKLYEE 370 (1167)
Q Consensus 302 ~~l~~dp~~~~~~~~d-~~~~~----~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~------~~~l~~~~~~ 370 (1167)
+++..- +.+..-+.- --.|. ..+.-+ .+ -.++ ---.+...+.... |--+..-|..
T Consensus 453 ~~i~~A-~La~F~~~ivpla~sl~~K~~~l~~----------~~--~~~~-~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~ 518 (1176)
T KOG1248|consen 453 DYIIGA-SLAFFTEYIVPLAMSLQLKAKKLKE----------AG--SQVS-LYDTLVDQLWSLLPGFCNYPVDLAESFTD 518 (1176)
T ss_pred HhhccC-cHHHHHHHHHHHHHHHHHHHHhhhh----------cc--CcHH-HHHHHHHHHHHhChhhhCCCccHHHHHHH
Confidence 221100 000000000 00000 000000 00 0011 0001111222222 3223345677
Q ss_pred HhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChh------hHH
Q 001062 371 ACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIK------TKV 444 (1167)
Q Consensus 371 i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~------~r~ 444 (1167)
+.|.+...+..+. ..|..++.++..++++..+.. ........+.++....++.++.....+... .|.
T Consensus 519 la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~------~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~ 591 (1176)
T KOG1248|consen 519 LAPILGAALLKRP-ELRETICNSLRMLVEQNKPSS------DAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRS 591 (1176)
T ss_pred HHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcc------hHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHH
Confidence 7788887776664 899999999999998742110 001111234455566666666666554322 233
Q ss_pred HHHHHHH-HHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHH---HHHHhccCCCCchhhhhHhhHHHHHHHh
Q 001062 445 GAFSVLR-ELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTF---TRLVLSSHSPPVFHPYIKALSSPVLAAV 520 (1167)
Q Consensus 445 ~~~~~l~-~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~---l~~l~~~~~~~~~~~~l~~ll~~l~~~l 520 (1167)
.-+.... ...+..|..+...+..-+.... .+.. .+......+.+ +..++.......+. .+. .+....
T Consensus 592 ~~L~~i~~~~~~~t~~dv~~~l~~s~~e~a---s~~~-~s~~~~~~~slLdl~~~~a~~~~e~~vs----~l~-~v~~~~ 662 (1176)
T KOG1248|consen 592 TVLEIIRVDYFTVTPTDVVGSLKDSAGELA---SDLD-ESVASFKTLSLLDLLIALAPVQTESQVS----KLF-TVDPEF 662 (1176)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhHh---ccch-hhhhhHHHHHHHHHHHhhhccccchhHH----HHH-HhhHHh
Confidence 3332222 3333334433222222221111 1111 11122233333 44444433323333 333 333333
Q ss_pred -cCCchHHHHHHHHHHHHHHHhccCCccccCCC-CccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCccccc
Q 001062 521 -GERYYKVTAEALRVCGELVRVLRPSVEGLGFD-FKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA 598 (1167)
Q Consensus 521 -~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~-~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~ 598 (1167)
+.....++..++++++.++.. +. +.. ...++..+++.+.+.+++ .+...+..++.|+..++...+.+...
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~--~s----~~~~~~q~i~~I~n~L~ds~qs--~~~~~~~~rl~~L~~L~~~~~~e~~~ 734 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSS--PS----GEGLVEQRIDDIFNSLLDSFQS--SSSPAQASRLKCLKRLLKLLSAEHCD 734 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcC--Cc----hhhHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHhccHHHHH
Confidence 334678999999999999875 22 111 245778888888888863 44567888999999999887755545
Q ss_pred chhhhHHHHHHhhc--CchhhHHHHHHHHHHh--cCCCC-C--chhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001062 599 ELPACLPVLVDRMG--NEITRLTAVKAFAVIA--ASPLH-I--DLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVV 671 (1167)
Q Consensus 599 ~~~~~l~~L~~~L~--~e~~r~~a~~al~~i~--~~~~~-~--~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~ 671 (1167)
.+...+|.++=.++ |+..|..|..+|-.|+ .+... . .-...++..+..+...+-......+...+.++..++.
T Consensus 735 ~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~ 814 (1176)
T KOG1248|consen 735 LIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ 814 (1176)
T ss_pred HHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 66666665554444 3346888888777766 22111 0 1123566666666666543333344444889999999
Q ss_pred HhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCch-hhhhhhchHHHHHHHhhhccchhhhHHHH
Q 001062 672 AYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNV-GLAVRNKVLPQALALIKSSLLQGQALVAL 750 (1167)
Q Consensus 672 ~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~-~~~~~~~~l~~l~~ll~~~~l~~~~l~~~ 750 (1167)
...+.++.+.++.+++.+...|..+.++++.+|+.++..++.. .|.. ...+.+.++|.++.+.+..- .......
T Consensus 815 e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~---~pe~~l~~~~~~LL~sll~ls~d~k--~~~r~Kv 889 (1176)
T KOG1248|consen 815 EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK---FPEECLSPHLEELLPSLLALSHDHK--IKVRKKV 889 (1176)
T ss_pred HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc---CCHHHHhhhHHHHHHHHHHHHHhhh--HHHHHHH
Confidence 8888888899999999999999999999999999999999988 7753 34567788888888765432 2222234
Q ss_pred HHHHHHHHhc
Q 001062 751 QSFFAALVYS 760 (1167)
Q Consensus 751 ~~~~~~l~~~ 760 (1167)
-.+++.++..
T Consensus 890 r~LlekLirk 899 (1176)
T KOG1248|consen 890 RLLLEKLIRK 899 (1176)
T ss_pred HHHHHHHHHH
Confidence 4455555543
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=99.45 E-value=5.9e-09 Score=126.09 Aligned_cols=469 Identities=13% Similarity=0.166 Sum_probs=289.1
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHH
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~ 83 (1167)
.-+..++..+.+.|..+|-|.---|.++.. ..++..--.+..+.+-+.|+|+.||..|+++++.+- -+..++
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~-----~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir---~~~i~e 139 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTAR-----LQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR---VSSVLE 139 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcc-----cChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---cHHHHH
Confidence 344555666777788888776666655433 234455567899999999999999999999998654 234456
Q ss_pred HHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 001062 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1167)
Q Consensus 84 ~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~ 163 (1167)
.++..+-+.+.+.++-+|..|++|+..+....|.. . .-..+++.|...|.++ ++.|...|+-+|.++....+..
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel--v--~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL--F--YQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc--c--cccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHhCchh
Confidence 67777778888888899999999999987655531 0 0123456666656654 6889999999999998776554
Q ss_pred hhHHHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 164 MSNDHERLLSALLPQLSA-NQASVRKKSVSCIASLASSLS--DDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 164 l~~~~~~l~~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
+... ...+..++..+.+ +.| -+- ..+..+..+.+ ++....++..+...+++.+ ..+.-.++.++-.+...
T Consensus 214 l~l~-~~~~~~Ll~~L~e~~EW-~Qi---~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N--~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 214 IESS-NEWVNRLVYHLPECNEW-GQL---YILELLAAQRPSDKESAETLLTRVLPRMSHQN--PAVVMGAIKVVANLASR 286 (746)
T ss_pred hHHH-HHHHHHHHHHhhcCChH-HHH---HHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCc
Confidence 4222 2233444555533 344 222 33444444433 2235567777888787764 35555555555444332
Q ss_pred h-hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhcc-CCCCCCCCCCCC
Q 001062 241 V-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSY-DPNFTDNMEEDS 318 (1167)
Q Consensus 241 ~-~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~-dp~~~~~~~~d~ 318 (1167)
. +..+...+..+.+.++.. .. .+++++-.++..+..++...|.-|.+++... ++.| ||
T Consensus 287 ~~~~~~~~~~~rl~~pLv~L-~s---s~~eiqyvaLr~I~~i~~~~P~lf~~~~~~F------f~~~~Dp---------- 346 (746)
T PTZ00429 287 CSQELIERCTVRVNTALLTL-SR---RDAETQYIVCKNIHALLVIFPNLLRTNLDSF------YVRYSDP---------- 346 (746)
T ss_pred CCHHHHHHHHHHHHHHHHHh-hC---CCccHHHHHHHHHHHHHHHCHHHHHHHHHhh------hcccCCc----------
Confidence 2 122222233343444443 33 5689999999999999988876555433211 1222 11
Q ss_pred cccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHH
Q 001062 319 DDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELV 398 (1167)
Q Consensus 319 ~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~ 398 (1167)
..||+.....|-.++... .+ ..++.-|.+...+.+...+..++.+++.+.
T Consensus 347 ------------------------~yIK~~KLeIL~~Lane~--Nv----~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA 396 (746)
T PTZ00429 347 ------------------------PFVKLEKLRLLLKLVTPS--VA----PEILKELAEYASGVDMVFVVEVVRAIASLA 396 (746)
T ss_pred ------------------------HHHHHHHHHHHHHHcCcc--cH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 157888888877665432 22 334444445556777888889999998886
Q ss_pred HhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcc-
Q 001062 399 RQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN- 477 (1167)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~- 477 (1167)
... ......++..+...+..+.. ....++.++..+....|+.. +++.+...+.
T Consensus 397 ~k~-------------------~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~------il~~L~~~~~~ 450 (746)
T PTZ00429 397 IKV-------------------DSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL------MLDTLVTDYGA 450 (746)
T ss_pred HhC-------------------hHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH------HHHHHHHhhcc
Confidence 432 23445666777777765433 34456778888888777642 3344443321
Q ss_pred cCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccch
Q 001062 478 DKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYV 557 (1167)
Q Consensus 478 d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l 557 (1167)
+.-..+..|...++.++.+.+... ..+.++..++..+.+....|+...+.++..+.-.. | +..
T Consensus 451 ~~i~e~~AKaaiiWILGEy~~~I~------~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~-p----------~~~ 513 (746)
T PTZ00429 451 DEVVEEEAKVSLLWMLGEYCDFIE------NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRD-P----------QGM 513 (746)
T ss_pred cccccHHHHHHHHHHHHhhHhhHh------hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcC-c----------HHH
Confidence 222244667777888888754221 12334444445555666789888888887776432 2 123
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001062 558 QPIYNAIMSRLTNQDQDQEVKECAISCMG 586 (1167)
Q Consensus 558 ~~l~~~ll~~l~~~d~~~~vr~~Ai~alg 586 (1167)
+.++..++..+.+.+.+++||.+|..-+.
T Consensus 514 ~~~l~~vL~~~t~~~~d~DVRDRA~~Y~r 542 (746)
T PTZ00429 514 EPQLNRVLETVTTHSDDPDVRDRAFAYWR 542 (746)
T ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 55666666666555678899999976554
No 29
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.1e-07 Score=110.68 Aligned_cols=597 Identities=16% Similarity=0.157 Sum_probs=316.0
Q ss_pred CChhHHhHhHHHHHHHhcccc-cC-CCh-----HH--HHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh-hhHHHH
Q 001062 16 KDKDFRYMATSDLLNELNKES-FK-ADA-----DL--EVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-PRVVEM 85 (1167)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~~~-~~-~~~-----~~--~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~-~~~~~l 85 (1167)
.|-.-||+-+.=|--.+..+. ++ +|+ +. ..+|+......+... +-.|..|+-+++.+..+-.. +.+..+
T Consensus 137 ~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~-~~~r~~aalllsk~~sR~D~~~~~~~F 215 (1133)
T KOG1943|consen 137 SDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISS-GILRRSAALLLSKLFSRTDVKDLLLSF 215 (1133)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHcccccHHHHHHHH
Confidence 345668888877776666532 11 333 22 445555544444433 37888888899888743221 113444
Q ss_pred HHHHHHHhcCCCcc--hhcHHHHHHHHHHhhcCCc-------------------hhHHHHHHHHHHHHHHhh-----hcc
Q 001062 86 TDKLCIKLLNGKDQ--HRDIASIALKTIIAEVTTS-------------------SLAQSIHTSLTPQLTKGI-----TLK 139 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~--~r~~a~~aL~~~~~~~~~~-------------------~~~~~~~~~i~p~Ll~~l-----~~~ 139 (1167)
++.+...-+..... ...+-..++..+++..+.+ .-.+....++++++.+.+ ...
T Consensus 216 l~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~pr 295 (1133)
T KOG1943|consen 216 LDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPR 295 (1133)
T ss_pred HHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecCCC
Confidence 55433322211111 1234556666666655442 001134455556665511 111
Q ss_pred CCChhHHHHHHHHHHHH---------------HHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH
Q 001062 140 DMNTEIRCECLDILCDV---------------LHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1167)
Q Consensus 140 ~~~~~v~~~~~~~L~~l---------------~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1167)
.++|....+.-.+-+.+ =..-|..+....+.++..++..+++.+..||=.|+..++.+...++.+
T Consensus 296 s~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~ 375 (1133)
T KOG1943|consen 296 SPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE 375 (1133)
T ss_pred CcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH
Confidence 12343321111111100 001122333566788899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhc-chhhhHHHHHHHhhhcCC-----CChhHHHHHHHHH
Q 001062 205 LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGP-HLGDTVPVLIDYCTSASE-----NDEELREYSLQAL 278 (1167)
Q Consensus 205 ~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p-~l~~lvp~l~~~l~~~~e-----~~~e~re~al~~l 278 (1167)
+.++++..++..+ .+-++...=.+++.+++.+++.. -+-| -++.++|.+...+.++.. ....+|++|.-++
T Consensus 376 Lad~vi~svid~~-~p~e~~~aWHgacLaLAELA~rG--lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~ 452 (1133)
T KOG1943|consen 376 LADQVIGSVIDLF-NPAEDDSAWHGACLALAELALRG--LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVC 452 (1133)
T ss_pred HHHHHHHHHHHhc-CcCCchhHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHH
Confidence 8888888888833 33322344457888888888752 1223 367899999999987210 2335999998888
Q ss_pred HHHHHhC-CccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q 001062 279 ESFLLRC-PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1167)
Q Consensus 279 ~~l~~~~-~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li 357 (1167)
..|.+.+ |.+++|++..+...++....+||.. .+||||..++...+
T Consensus 453 WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrev---------------------------------ncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 453 WAFARAYSPSDLKPVLQSLASALLIVALFDREV---------------------------------NCRRAASAALQENV 499 (1133)
T ss_pred HHHHhcCChhhhhHHHHHHHHHHHHHHhcCchh---------------------------------hHhHHHHHHHHHHh
Confidence 8888755 6679999999999888777777642 78999999998887
Q ss_pred hcCC---hhhH--------------HHHHHH--------------hhHHH-hhhccCChhHHHHHHHHHHHHHHhhCCCC
Q 001062 358 VSRP---EMLS--------------KLYEEA--------------CPKLI-DRFKEREENVKMDVFNTFIELVRQTGNVT 405 (1167)
Q Consensus 358 ~~~~---~~l~--------------~~~~~i--------------~p~L~-~~l~d~~~~vr~~~~~~l~~l~~~~~~~~ 405 (1167)
-.++ +-++ ..|..+ +..++ +.+..=...+|.-+..++..+....
T Consensus 500 GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~---- 575 (1133)
T KOG1943|consen 500 GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE---- 575 (1133)
T ss_pred ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh----
Confidence 6543 1111 111111 11111 0011112223333333333322211
Q ss_pred CCccCCCCCchHHHHH-HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCch---h----Hh---hhhhhHHHHHH
Q 001062 406 KGQIDNNELNPRWLLK-QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC---L----AD---HIGSLIPGIEK 474 (1167)
Q Consensus 406 ~~~~~~~~~~p~~~l~-~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~---l----~~---~l~~l~~~l~~ 474 (1167)
| ..+. .++|++++ ..-.++...|++++.+.++++..+... + .. -++.++|.+..
T Consensus 576 ----------p-k~~a~~~L~~lld----~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~ 640 (1133)
T KOG1943|consen 576 ----------P-KYLADYVLPPLLD----STLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICD 640 (1133)
T ss_pred ----------H-Hhhcccchhhhhh----hhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHH
Confidence 1 1122 23344443 333456778888887777776543210 1 11 12223333333
Q ss_pred hcccCCCCchHHHHHHHHHHHHhccCCCCchhhhh-HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhcc--CCccc---
Q 001062 475 SLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYI-KALSSPVLAAVGERYYKVTAEALRVCGELVRVLR--PSVEG--- 548 (1167)
Q Consensus 475 ~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l-~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~--~~~~~--- 548 (1167)
.--.+....-.+...+.++..+-.+.. ..+..++ +.....+.+.+.+++ .++..|...+++++...- ++...
T Consensus 641 ~~~~rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~l 718 (1133)
T KOG1943|consen 641 RYFYRGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPL 718 (1133)
T ss_pred HHhccchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHH
Confidence 222221112344455555555543321 2222222 223333333333333 567777788887765321 11000
Q ss_pred -------------------c-------C-CCC-ccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCc-ccccc
Q 001062 549 -------------------L-------G-FDF-KPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD-NLGAE 599 (1167)
Q Consensus 549 -------------------~-------~-~~~-~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~-~l~~~ 599 (1167)
+ + ... .++-+.+...+++.. ..+..++-|+..+.++..++...+. .++..
T Consensus 719 i~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~-p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~ 797 (1133)
T KOG1943|consen 719 ITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELL-PSDAWAEARQQNVKALAHVCKTVTSLLFSES 797 (1133)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccC-cccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 0 0 000 011122222222222 2344567888888888888877763 34446
Q ss_pred hhhhHHHHHHhhcCc----------hhhHHHHHHHHHHhcC-CCCCch-hhHHHHHHHHHHHH-HHHhhHHHHHHHHHHH
Q 001062 600 LPACLPVLVDRMGNE----------ITRLTAVKAFAVIAAS-PLHIDL-TCVLEHVIAELTAF-LRKANRALRQATLGTM 666 (1167)
Q Consensus 600 ~~~~l~~L~~~L~~e----------~~r~~a~~al~~i~~~-~~~~~~-~~~~~~~l~~L~~~-L~~~~~~lr~~al~~L 666 (1167)
..+++..|++.+.+= -+|+.|++++..+..- +.+.-+ +..+..++..+... ..+-+ .+|..+..|+
T Consensus 798 ~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKId-rlre~a~~~~ 876 (1133)
T KOG1943|consen 798 IEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKID-RLRELAASAL 876 (1133)
T ss_pred HHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHH
Confidence 777777777776431 1689999999876521 111111 22333333322222 22334 3599999999
Q ss_pred HHHHHH
Q 001062 667 NSLVVA 672 (1167)
Q Consensus 667 ~~l~~~ 672 (1167)
..+...
T Consensus 877 ~qi~~~ 882 (1133)
T KOG1943|consen 877 NQIVVH 882 (1133)
T ss_pred hceeec
Confidence 988765
No 30
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=7.6e-08 Score=115.70 Aligned_cols=627 Identities=16% Similarity=0.179 Sum_probs=371.6
Q ss_pred HhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChh--------HHHHHHHHHHHhhhhcChhhHH
Q 001062 12 KITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGD--------VSGLAVKCLAPLVKKVSEPRVV 83 (1167)
Q Consensus 12 ~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~--------Vr~~A~~~l~~l~~~~~~~~~~ 83 (1167)
-|...+..++..+++.|.....+....++.....+++..+.+.--+.+.. |-+.|-.|++.+=....-..++
T Consensus 232 i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~ 311 (1176)
T KOG1248|consen 232 ITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALP 311 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhh
Confidence 35667788899999999998887555566677777777777665554443 2344444444433333333455
Q ss_pred HHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 001062 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1167)
Q Consensus 84 ~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~ 163 (1167)
.+++..+....++..++-..+...++.+..+... +....|...+-.++ ..+ --.+-..++.+++.+.+.+|+.
T Consensus 312 ~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~--~~~~~c~~~~~~~l---~~k--f~~~~~~ilqi~s~~fek~G~~ 384 (1176)
T KOG1248|consen 312 RLFSLFFTILESLIEELVQAASQSLKEILKESVT--VIDALCSKQLHSLL---DYK--FHAVWRFILQILSALFEKCGEL 384 (1176)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc--ccHHHHHHHHHHHH---cch--HHHHHHHHHHHHHHHHHHhhhh
Confidence 6666666656677777667778888888877665 33444555333332 221 2345667889999999999996
Q ss_pred hhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH-Hhh
Q 001062 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSR-AVG 242 (1167)
Q Consensus 164 l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~-~~~ 242 (1167)
..++....++.+-..=.+++..-+-.--+|+|+.+.++|++.+-.++|-=+ ........| .+ ++=.+=. ..+
T Consensus 385 s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~R-sW--LLPvLR~~i~~ 457 (1176)
T KOG1248|consen 385 SGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTR-SW--LLPVLRDYIIG 457 (1176)
T ss_pred cCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccch-hH--hHHHHHHhhcc
Confidence 557766666666554334444444466779999999999987655555333 111111122 22 1111111 134
Q ss_pred hhhhcchhhhHHHHHHHhhhc---CC--CCh-hHHHHHHHHHHHHHHhC--CccccccHHHHHHHHHHhhccCCCCCCCC
Q 001062 243 YRFGPHLGDTVPVLIDYCTSA---SE--NDE-ELREYSLQALESFLLRC--PRDISSYCDEILHLTLEYLSYDPNFTDNM 314 (1167)
Q Consensus 243 ~~~~p~l~~lvp~l~~~l~~~---~e--~~~-e~re~al~~l~~l~~~~--~~~~~~~l~~ii~~~~~~l~~dp~~~~~~ 314 (1167)
..++-|...++|+..++-... .+ ... ..+..+.+.++.+-..| |.+...-+..+.+.+...+.|.|
T Consensus 458 A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~------ 531 (1176)
T KOG1248|consen 458 ASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP------ 531 (1176)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch------
Confidence 455556677777766654321 01 111 23333444445444444 66666667777777777776533
Q ss_pred CCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcC-C--------hhhHHHHHHHhhHHHhhhccCChh
Q 001062 315 EEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-P--------EMLSKLYEEACPKLIDRFKEREEN 385 (1167)
Q Consensus 315 ~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~-~--------~~l~~~~~~i~p~L~~~l~d~~~~ 385 (1167)
..|..-+.+|..++... | +.+..+-...+|.+.+........
T Consensus 532 -----------------------------elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~ 582 (1176)
T KOG1248|consen 532 -----------------------------ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAA 582 (1176)
T ss_pred -----------------------------HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcc
Confidence 46778888888888764 1 234456666778777666433333
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChh----hHHHHHHHHHHHHHhcCch-
Q 001062 386 VKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIK----TKVGAFSVLRELVVVLPDC- 460 (1167)
Q Consensus 386 vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~----~r~~~~~~l~~l~~~~~~~- 460 (1167)
-| .+..+....+..+... .-...| .+....+...+.....+.+.. .....+..+..++.+.+..
T Consensus 583 ~~-~~l~~~~~~L~~i~~~------~~~~t~----~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~ 651 (1176)
T KOG1248|consen 583 GR-KILASRSTVLEIIRVD------YFTVTP----TDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ 651 (1176)
T ss_pred cc-ccHHHHHHHHHHHHHH------Hhhccc----HHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh
Confidence 32 2222222222221100 000001 112223333333333333211 2223344444555444332
Q ss_pred hHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCch-hhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001062 461 LADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF-HPYIKALSSPVLAAVGERYYKVTAEALRVCGELV 539 (1167)
Q Consensus 461 l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~-~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1167)
.+..+ .+.|... .+ .+..++..+..+|..++..-..+.+ ..++..+...+...+++.....+..++.++..++
T Consensus 652 vs~l~-~v~~~~e----~~-~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~ 725 (1176)
T KOG1248|consen 652 VSKLF-TVDPEFE----NS-SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLL 725 (1176)
T ss_pred HHHHH-HhhHHhh----cc-ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 22223 3333332 22 2457888899999999876222333 4477777888888887777788899999999998
Q ss_pred HhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH--Hhc---Cccc-ccchhhhHHHHHHhhcC
Q 001062 540 RVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVI--STF---GDNL-GAELPACLPVLVDRMGN 613 (1167)
Q Consensus 540 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~--~~~---g~~l-~~~~~~~l~~L~~~L~~ 613 (1167)
+..+. ++..++..+++.++=.. ++.+..-|+.|+.||-.+. ... |+.= ...+...++++...+-+
T Consensus 726 ~~~~~-------e~~~~i~k~I~EvIL~~--Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~g 796 (1176)
T KOG1248|consen 726 KLLSA-------EHCDLIPKLIPEVILSL--KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVG 796 (1176)
T ss_pred HhccH-------HHHHHHHHHHHHHHHhc--ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcc
Confidence 86542 34456666666655444 4566677888877777665 222 2211 22778888888888877
Q ss_pred chhhHHH--HHHHHHHhcC-CCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Q 001062 614 EITRLTA--VKAFAVIAAS-PLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELS 690 (1167)
Q Consensus 614 e~~r~~a--~~al~~i~~~-~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~ 690 (1167)
+.++..+ +-+++.++.. ..-.+ .++++.++..+..+|.++.+.++.+|+..+..++...+...-...++.+++.+.
T Consensus 797 d~~~~~as~Ivai~~il~e~~~~ld-~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll 875 (1176)
T KOG1248|consen 797 DSTRVVASDIVAITHILQEFKNILD-DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLL 875 (1176)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHH
Confidence 7776554 4555555521 11111 678999999999999999999999999999999988775433445677777777
Q ss_pred hhcCCCchhhHHHHHHHHHHHhhc
Q 001062 691 TLISDSDLHMTALALELCCTLMAD 714 (1167)
Q Consensus 691 ~~l~~~d~~~~~~al~~l~~l~~~ 714 (1167)
.++.+....++...-.++..+++.
T Consensus 876 ~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 876 ALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Confidence 777666677777777777777766
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=99.37 E-value=6.2e-08 Score=117.40 Aligned_cols=284 Identities=12% Similarity=0.155 Sum_probs=181.0
Q ss_pred HHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHH
Q 001062 370 EACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSV 449 (1167)
Q Consensus 370 ~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~ 449 (1167)
.++..+..+++.++..|..++++++..+..... + ......+..+.+.+... .++++.+|-.++.-
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~-------------~-~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~ 320 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS-------------Q-ELIERCTVRVNTALLTL-SRRDAETQYIVCKN 320 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC-------------H-HHHHHHHHHHHHHHHHh-hCCCccHHHHHHHH
Confidence 344445556777888898888887765542211 1 11222222233333333 44567789899988
Q ss_pred HHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHH
Q 001062 450 LRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTA 529 (1167)
Q Consensus 450 l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~ 529 (1167)
+..++...|.-|.+++.. +.-..+|+ ..+|...+.++..++.. .. +..++..+..++.+.+..++.
T Consensus 321 I~~i~~~~P~lf~~~~~~----Ff~~~~Dp---~yIK~~KLeIL~~Lane---~N----v~~IL~EL~eYa~d~D~ef~r 386 (746)
T PTZ00429 321 IHALLVIFPNLLRTNLDS----FYVRYSDP---PFVKLEKLRLLLKLVTP---SV----APEILKELAEYASGVDMVFVV 386 (746)
T ss_pred HHHHHHHCHHHHHHHHHh----hhcccCCc---HHHHHHHHHHHHHHcCc---cc----HHHHHHHHHHHhhcCCHHHHH
Confidence 888888888777665432 33334454 46888888888888753 22 466788888888888889999
Q ss_pred HHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHH
Q 001062 530 EALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVD 609 (1167)
Q Consensus 530 ~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~ 609 (1167)
.++.++|.++..+ ......++..+++.+... .++...++.++..++....+.. +++.++.
T Consensus 387 ~aIrAIg~lA~k~-----------~~~a~~cV~~Ll~ll~~~---~~~v~e~i~vik~IlrkyP~~~------il~~L~~ 446 (746)
T PTZ00429 387 EVVRAIASLAIKV-----------DSVAPDCANLLLQIVDRR---PELLPQVVTAAKDIVRKYPELL------MLDTLVT 446 (746)
T ss_pred HHHHHHHHHHHhC-----------hHHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHHHHCccHH------HHHHHHH
Confidence 9999999997543 335677787777777532 2345567888888887654321 3455554
Q ss_pred h-----hcCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHH
Q 001062 610 R-----MGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEV 684 (1167)
Q Consensus 610 ~-----L~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~ 684 (1167)
. +.....|...++.+|+.+.. -+..+.++..+..-...++..+|.+.+.+...++...+. ..+.
T Consensus 447 ~~~~~~i~e~~AKaaiiWILGEy~~~------I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-----~~~~ 515 (746)
T PTZ00429 447 DYGADEVVEEEAKVSLLWMLGEYCDF------IENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-----GMEP 515 (746)
T ss_pred hhcccccccHHHHHHHHHHHHhhHhh------HhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH-----HHHH
Confidence 2 33445677778899987632 112334444444433456778999999999988876542 2345
Q ss_pred HHHHHhhhc-C-CCchhhHHHHHHHHHHHhh
Q 001062 685 IIVELSTLI-S-DSDLHMTALALELCCTLMA 713 (1167)
Q Consensus 685 ~l~~l~~~l-~-~~d~~~~~~al~~l~~l~~ 713 (1167)
++..+.... + ++|+.+|.-++..+..+..
T Consensus 516 ~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 516 QLNRVLETVTTHSDDPDVRDRAFAYWRLLSK 546 (746)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHcC
Confidence 555555433 3 4677889888887776643
No 32
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.34 E-value=6.5e-09 Score=124.04 Aligned_cols=560 Identities=16% Similarity=0.191 Sum_probs=332.4
Q ss_pred HHHHHHHHHHhhhhcChhh-HHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCC
Q 001062 63 SGLAVKCLAPLVKKVSEPR-VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDM 141 (1167)
Q Consensus 63 r~~A~~~l~~l~~~~~~~~-~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~ 141 (1167)
|-++.+-+..+.-..++.. -..+++.+.+.. ....++...++..++.++.... ...+...++|.+.......
T Consensus 99 r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~----~~~~~~~ll~~le~l~~~e-- 171 (759)
T KOG0211|consen 99 RLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG----GPEYAHMLLPPLELLATVE-- 171 (759)
T ss_pred hhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc----chhHHHHhhHHHHhhhHHH--
Confidence 3344444444443333321 346677777766 5556667777777776655432 3456677777776665543
Q ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcC
Q 001062 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSK 220 (1167)
Q Consensus 142 ~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~ 220 (1167)
.+.||+.+++.+..++......- ....+++.+...... ++ .-|-.++..++......++..+..-+..+.+.+.+.
T Consensus 172 et~vr~k~ve~l~~v~~~~~~~~--~~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d 248 (759)
T KOG0211|consen 172 ETGVREKAVESLLKVAVGLPKEK--LREHLVPLLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQD 248 (759)
T ss_pred HHHHHHHHHHHHHHHHHhcChHH--HHHHHHHHHHHccch-hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccc
Confidence 47789999999998887766642 234444444433333 44 556667777777777777544443344444444433
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHH
Q 001062 221 GAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLT 300 (1167)
Q Consensus 221 ~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~ 300 (1167)
. ...+|+++.+-+|.++...+.... ...++|...+...+ +.+-+|+.|...+..+........ +....+.+.+
T Consensus 249 ~-~~~Vr~~~a~~l~~~a~~~~~~~~--~s~v~~~~~~L~~D---dqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l 321 (759)
T KOG0211|consen 249 D-TPMVRRAVASNLGNIAKVLESEIV--KSEVLPTLIQLLRD---DQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESL 321 (759)
T ss_pred c-chhhHHHHHhhhHHHHHHHHHHHH--HhhccHHHhhhhhc---chhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHH
Confidence 3 247888999999999998876322 25566666666666 678899999988887776543221 1111111111
Q ss_pred HHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhc
Q 001062 301 LEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFK 380 (1167)
Q Consensus 301 ~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~ 380 (1167)
..+.+|.+|++|...+.....+....+.. .......|.....++
T Consensus 322 ----------------------------------~~~~~d~~~~v~~~~~~~~~~L~~~~~~~--~~~~~~~~~~~~l~~ 365 (759)
T KOG0211|consen 322 ----------------------------------VQAVEDGSWRVSYMVADKFSELSSAVGPS--ATRTQLVPPVSNLLK 365 (759)
T ss_pred ----------------------------------HHHhcChhHHHHHHHhhhhhhHHHHhccc--cCcccchhhHHHHhc
Confidence 11235678999988776665555443220 011122333445568
Q ss_pred cCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCch
Q 001062 381 EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC 460 (1167)
Q Consensus 381 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~ 460 (1167)
+.++++|.++..-...+...... .+ ...--...+++.+.....+.+..+|.+.......+...+|
T Consensus 366 ~~~~e~r~a~a~~~~~l~~~l~~-----------~~--~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-- 430 (759)
T KOG0211|consen 366 DEEWEVRYAIAKKVQKLACYLNA-----------SC--YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-- 430 (759)
T ss_pred chhhhhhHHhhcchHHHhhhcCc-----------cc--ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--
Confidence 88889987765444433322210 00 0001112345666666677777777665544333333333
Q ss_pred hHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 001062 461 LADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVR 540 (1167)
Q Consensus 461 l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~ 540 (1167)
...-+..+.|.....++|. ...++......+..+....+......+.+.++|.+.....|..++++.+.+..+-.++.
T Consensus 431 k~~ti~~llp~~~~~l~de--~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 431 KERTISELLPLLIGNLKDE--DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred cCcCccccChhhhhhcchh--hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 2344667777777777765 34666665555554444444445556778899999988888889999998888887775
Q ss_pred hccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCc--hhhH
Q 001062 541 VLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE--ITRL 618 (1167)
Q Consensus 541 ~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e--~~r~ 618 (1167)
..+ .+++.+-+..++... -.|...++|++|.+.+-.++..+|... ....+.+.++....+. -.|.
T Consensus 509 q~~----------~~~~~~~~~~l~~~~-l~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~ 575 (759)
T KOG0211|consen 509 QLG----------VEFFDEKLAELLRTW-LPDHVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRM 575 (759)
T ss_pred hhh----------hHHhhHHHHHHHHhh-hhhhHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCcccchhh
Confidence 543 223333333333222 134557899999999999999988322 4555666666544332 3566
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHH-HHHHHhhhcCCCc
Q 001062 619 TAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEV-IIVELSTLISDSD 697 (1167)
Q Consensus 619 ~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~-~l~~l~~~l~~~d 697 (1167)
+.+.++..++.-..+ +-+...+++.+..+.......+|-+++..|..+...... +..+. +.+.+..+.+++|
T Consensus 576 t~l~si~~la~v~g~---ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~ 648 (759)
T KOG0211|consen 576 TTLFSIHELAEVLGQ---EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQE 648 (759)
T ss_pred HHHHHHHHHHHHhcc---HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcc
Confidence 666666666532211 334566777777777788889999999999998775543 23333 3333333445777
Q ss_pred hhhHHHHHHHHHHHh
Q 001062 698 LHMTALALELCCTLM 712 (1167)
Q Consensus 698 ~~~~~~al~~l~~l~ 712 (1167)
...+-.+..+++.+-
T Consensus 649 ~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 649 LDVRYRAILAFGSIE 663 (759)
T ss_pred cchhHHHHHHHHHHH
Confidence 777666666555543
No 33
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=3e-06 Score=100.37 Aligned_cols=509 Identities=16% Similarity=0.184 Sum_probs=279.7
Q ss_pred HHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCc--chhcHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 001062 52 VQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKD--QHRDIASIALKTIIAEVTTSSLAQSIHTSLT 129 (1167)
Q Consensus 52 l~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~--~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~ 129 (1167)
+.+--|+++.+|..|...|.++-+ .+..+..|.+.+.++.. .+|..|++=+|+.+...=+. . . -
T Consensus 10 ~~~T~d~d~~~R~~AE~~L~q~~K------~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~-~------~-~ 75 (1010)
T KOG1991|consen 10 FRATIDSDAKERKAAEQQLNQLEK------QPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSS-H------E-A 75 (1010)
T ss_pred HHHhcCCChHHHHHHHHHHHHhhc------CCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCc-c------C-C
Confidence 344447889999999998887642 34566777776665443 47889999899876432110 0 0 0
Q ss_pred HHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 001062 130 PQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA 209 (1167)
Q Consensus 130 p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l 209 (1167)
| |.... ........+.+.++..+......+|..--.|+..+...-.++.|..+
T Consensus 76 ~----g~~~~-----------------------I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l 128 (1010)
T KOG1991|consen 76 P----GRPFG-----------------------IPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGL 128 (1010)
T ss_pred C----CCcCC-----------------------CChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhH
Confidence 0 00000 00112222223333333233336666666777777777666778888
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh-----h--hhhcchhhhHHHHH----HHhhhcCCCChhHHHHHHHHH
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG-----Y--RFGPHLGDTVPVLI----DYCTSASENDEELREYSLQAL 278 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~-----~--~~~p~l~~lvp~l~----~~l~~~~e~~~e~re~al~~l 278 (1167)
++.+...+++++. ...-+++.++-.++++-- . .+++-+....|.++ +.+...++...++-..-+..+
T Consensus 129 ~d~i~~~Lqs~~~--~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKif 206 (1010)
T KOG1991|consen 129 LDKIKNLLQSQDA--NHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIF 206 (1010)
T ss_pred HHHHHHHhcCcch--hhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 8888888887653 345577888888887532 1 13333344444444 444441112223333344444
Q ss_pred HHHHHh-CCcccc--ccHHHHHHHHHHhhccC-CCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHH
Q 001062 279 ESFLLR-CPRDIS--SYCDEILHLTLEYLSYD-PNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLA 354 (1167)
Q Consensus 279 ~~l~~~-~~~~~~--~~l~~ii~~~~~~l~~d-p~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~ 354 (1167)
-+.+.+ .|..+. ..+..-+.+.+..+... |+ +.... |..+.-...-||++++|..-+.
T Consensus 207 ks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~--E~l~~----------------d~e~R~~~~wwK~KKWa~~~L~ 268 (1010)
T KOG1991|consen 207 KSLIYYELPLELSAPETFTSWMELFLSILNRPVPV--EVLSL----------------DPEDRSSWPWWKCKKWALHILN 268 (1010)
T ss_pred HHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCCh--hcccC----------------ChhhcccccchhhHHHHHHHHH
Confidence 444432 344332 23445555666555421 22 11000 0001123457999999999999
Q ss_pred HHHhcCChh---------hH-----HHHHHHhhHHHhhh---ccC---ChhHHHHHHHHHHHHHHhhCCCCCCccCCCCC
Q 001062 355 ALIVSRPEM---------LS-----KLYEEACPKLIDRF---KER---EENVKMDVFNTFIELVRQTGNVTKGQIDNNEL 414 (1167)
Q Consensus 355 ~li~~~~~~---------l~-----~~~~~i~p~L~~~l---~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~ 414 (1167)
.+.+.+++. +. .+...++..+++-+ +.+ .+.|-.-++..+...+.+..
T Consensus 269 Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~------------ 336 (1010)
T KOG1991|consen 269 RLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHAS------------ 336 (1010)
T ss_pred HHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHH------------
Confidence 888876421 11 12222333322222 111 12233333333333322211
Q ss_pred chHHHHHHHHHHHHH-HHHHHhc--cCC----------------------hhhHHHHHHHHHHHHHhcCchhHhhhhhhH
Q 001062 415 NPRWLLKQEVSKIVK-SINRQLR--EKS----------------------IKTKVGAFSVLRELVVVLPDCLADHIGSLI 469 (1167)
Q Consensus 415 ~p~~~l~~~~~~l~~-~l~~~L~--~~~----------------------~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~ 469 (1167)
-...+++++..++. .++.++. +.+ .+.+.++..++.+++..-++.- ++.++
T Consensus 337 -twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~---l~k~l 412 (1010)
T KOG1991|consen 337 -TWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKET---LPKIL 412 (1010)
T ss_pred -HHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhh---hhhHH
Confidence 01245566666553 4444432 211 1234677778888887664333 66677
Q ss_pred HHHHHhcc------cCCCCchHHHHHHHHHHHHhccCC-CCchhhhhHh-hHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 001062 470 PGIEKSLN------DKSSTSNLKIEALTFTRLVLSSHS-PPVFHPYIKA-LSSPVLAAVGERYYKVTAEALRVCGELVRV 541 (1167)
Q Consensus 470 ~~l~~~l~------d~~~~~~~~~~al~~l~~l~~~~~-~~~~~~~l~~-ll~~l~~~l~d~~~~v~~~al~~l~~l~~~ 541 (1167)
+.+.+.|. ....+.+.+..|+..++++++... ...+...++. +++.+...+++++--.|+.|+.+++.++..
T Consensus 413 ~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~ 492 (1010)
T KOG1991|consen 413 SFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSI 492 (1010)
T ss_pred HHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhc
Confidence 77777666 223345567788888888875432 2344444543 567888888999889999999999999732
Q ss_pred -ccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCc---ccccchhhhHHHHHHhhcCchhh
Q 001062 542 -LRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD---NLGAELPACLPVLVDRMGNEITR 617 (1167)
Q Consensus 542 -~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~---~l~~~~~~~l~~L~~~L~~e~~r 617 (1167)
+.. ...+...+......+.+ |.+..||-.|.-|+..++++... .++++++.++..|+. |.|+..-
T Consensus 493 df~d---------~~~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~-L~ne~En 561 (1010)
T KOG1991|consen 493 DFKD---------PNNLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLK-LSNEVEN 561 (1010)
T ss_pred cCCC---------hHHHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH-HHHhcch
Confidence 221 23567788888888864 66778999999999999988653 366677766666654 2333222
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q 001062 618 LTAVKAFAVIAASPLHIDLTCVLEHVIAELTA 649 (1167)
Q Consensus 618 ~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~ 649 (1167)
..-..++..++.. .+.++.||..++...|..
T Consensus 562 d~Lt~vme~iV~~-fseElsPfA~eL~q~La~ 592 (1010)
T KOG1991|consen 562 DDLTNVMEKIVCK-FSEELSPFAVELCQNLAE 592 (1010)
T ss_pred hHHHHHHHHHHHH-HHHhhchhHHHHHHHHHH
Confidence 2223344444422 123456666666665543
No 34
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.8e-06 Score=97.20 Aligned_cols=587 Identities=15% Similarity=0.170 Sum_probs=301.8
Q ss_pred CChhHHhHhHHHHHHHhcccccC-------CChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHH
Q 001062 16 KDKDFRYMATSDLLNELNKESFK-------ADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDK 88 (1167)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~~~~~-------~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~ 88 (1167)
.|+.+|.+|.--++++++++|.. +.+...+.+...++..+-+....+|.+=..++..+.++=-++.|+.+++.
T Consensus 51 ~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~d 130 (960)
T KOG1992|consen 51 QDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPD 130 (960)
T ss_pred cChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 37889999999999999986633 33456667777777877777788999999999999988778889999999
Q ss_pred HHHHhcCCCcchhcHHHHHHHHHHhhcCCc----hhHHHHHHHHHH----H---HH----HhhhccCCChhHHHHHHHHH
Q 001062 89 LCIKLLNGKDQHRDIASIALKTIIAEVTTS----SLAQSIHTSLTP----Q---LT----KGITLKDMNTEIRCECLDIL 153 (1167)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~----~~~~~~~~~i~p----~---Ll----~~l~~~~~~~~v~~~~~~~L 153 (1167)
|++.+++++-.+..+....-..+++...++ .++..+ +.++. . |+ ...+..+.+.. ++..|
T Consensus 131 L~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EI-K~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~----~l~~l 205 (960)
T KOG1992|consen 131 LVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEI-KLVLDRFAEPLTDLFRKTMELIQRHANDAA----ALNIL 205 (960)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHH-HHHHHhhHhHHHHHHHHHHHHHhhcccchh----HHHHH
Confidence 999998765544444444445566666553 222221 11111 1 11 11100000111 11111
Q ss_pred HH----HHHHh--------ccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCC
Q 001062 154 CD----VLHKF--------GNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG 221 (1167)
Q Consensus 154 ~~----l~~~~--------g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~ 221 (1167)
-. +++-| ++.+..+..+-|..+.+.++.+.|.. ++..
T Consensus 206 f~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~l-------------------------------e~~~ 254 (960)
T KOG1992|consen 206 FGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLL-------------------------------ESDE 254 (960)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCccc-------------------------------ccCc
Confidence 11 11111 11112222223333333332222211 1110
Q ss_pred C--C--hHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhCC--ccccccH
Q 001062 222 A--K--PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSAS--ENDEELREYSLQALESFLLRCP--RDISSYC 293 (1167)
Q Consensus 222 ~--~--~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~--e~~~e~re~al~~l~~l~~~~~--~~~~~~l 293 (1167)
+ + ...|...|..+.--+..-++.|.||+++.+......+...+ ...|.+...|+++|.+++++-. +-|. .
T Consensus 255 ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~--~ 332 (960)
T KOG1992|consen 255 EEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFE--G 332 (960)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhc--c
Confidence 0 0 13344445555555666778899999999998888876632 1334566677888877775421 1111 1
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhh--cCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHH
Q 001062 294 DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDES--ANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEA 371 (1167)
Q Consensus 294 ~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~--~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i 371 (1167)
+.++..+...+. =||+.-..+|+ ++ ++|+-.++. |-+-+| -| .-||+|+..++.+...+...+..++...
T Consensus 333 ~~vl~~i~e~Vv-lpN~~lR~eDe--El-FED~pleYiRRDlEGsD-vd---TRRR~a~dlvrgL~~~fe~~vt~v~~~~ 404 (960)
T KOG1992|consen 333 ENVLAQICEKVV-LPNLILREEDE--EL-FEDNPLEYIRRDLEGSD-VD---TRRRAAIDLVRGLCKNFEGQVTGVFSSE 404 (960)
T ss_pred hHHHHHHHHhhc-ccccccchhhH--HH-hccCHHHHHHHhcccCC-cc---hhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 222322222222 26764322111 01 000000000 000011 11 5588999888887776643333344444
Q ss_pred hhHHHhhh-ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHH
Q 001062 372 CPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVL 450 (1167)
Q Consensus 372 ~p~L~~~l-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l 450 (1167)
+..+++.+ +++ +.+|+.+-.++.++
T Consensus 405 v~~~l~~y~~nP------------------------------------------------------S~nWk~kd~aiyL~ 430 (960)
T KOG1992|consen 405 VQRLLDQYSKNP------------------------------------------------------SGNWKKKDRAIYLV 430 (960)
T ss_pred HHHHHHHhccCC------------------------------------------------------Cccccccchhhhhh
Confidence 33333332 111 11233333344433
Q ss_pred HHHHHhcC---ch---------hHhh-hhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHH
Q 001062 451 RELVVVLP---DC---------LADH-IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVL 517 (1167)
Q Consensus 451 ~~l~~~~~---~~---------l~~~-l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~ 517 (1167)
.+++.... .+ +..+ ...+.|.+... +.+..+-++.+++..+-.+=. ..-.+++-.++|.+.
T Consensus 431 talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~--~vn~~pilka~aIKy~~~FR~----ql~~~~lm~~~p~li 504 (960)
T KOG1992|consen 431 TALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSP--NVNEFPILKADAIKYIYTFRN----QLGKEHLMALLPRLI 504 (960)
T ss_pred HHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccC--ccccccchhhcccceeeeecc----cCChHHHHHHHHHHH
Confidence 33332210 00 1111 22333333320 111223355555443322211 122347788899999
Q ss_pred HHhcCCchHHHHHHHHHHHHHHHhccCCcccc--CCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 001062 518 AAVGERYYKVTAEALRVCGELVRVLRPSVEGL--GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDN 595 (1167)
Q Consensus 518 ~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~--~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~ 595 (1167)
..++...+.|-..|..++..+...-.+..... +.+..||+..++..+++.++..+. . --+-...|+-.++....+.
T Consensus 505 ~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~-~-EneylmKaImRii~i~~~~ 582 (960)
T KOG1992|consen 505 RFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK-A-ENEYLMKAIMRIISILQSA 582 (960)
T ss_pred HhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc-c-ccHHHHHHHHHHHHhCHHh
Confidence 99988777777788888887765432211000 345788888888888877753222 1 1233444555555444444
Q ss_pred cccchhhhHHHHHHh----hcCchh-h--HHHHHHHHHHhcCCCCC---chhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001062 596 LGAELPACLPVLVDR----MGNEIT-R--LTAVKAFAVIAASPLHI---DLTCVLEHVIAELTAFLRKANRALRQATLGT 665 (1167)
Q Consensus 596 l~~~~~~~l~~L~~~----L~~e~~-r--~~a~~al~~i~~~~~~~---~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~ 665 (1167)
.-|+.+.+++.|.+. -+|... + .--..+++.+.....+. -+..+...++|.+...++..-...-.-++..
T Consensus 583 i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQl 662 (960)
T KOG1992|consen 583 IIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQL 662 (960)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666555543 345432 1 22344444444221111 2456777788888887877666677788999
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHh-hhc--CCCchhhHHHHHHHHHHHhhc
Q 001062 666 MNSLVVAYGDKIGASAYEVIIVELS-TLI--SDSDLHMTALALELCCTLMAD 714 (1167)
Q Consensus 666 L~~l~~~~~~~~~~~~~~~~l~~l~-~~l--~~~d~~~~~~al~~l~~l~~~ 714 (1167)
++.+++.+.+.++.. +.++++-+. +.+ ++.+ .++....+..+.+.
T Consensus 663 la~lve~~~~~ip~~-~~~l~~~lLsp~lW~r~gN---ipalvrLl~aflk~ 710 (960)
T KOG1992|consen 663 LAVLVEHSSGTIPDS-YSPLFPPLLSPNLWKRSGN---IPALVRLLQAFLKT 710 (960)
T ss_pred HHHHHHhcCCCCchh-HHHHHHHhcCHHHHhhcCC---cHHHHHHHHHHHhc
Confidence 999999877644443 444444332 222 2222 34556666777766
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.28 E-value=3.8e-10 Score=143.43 Aligned_cols=274 Identities=18% Similarity=0.234 Sum_probs=194.8
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHH
Q 001062 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1167)
Q Consensus 47 i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~ 126 (1167)
.++.|+..|+|+++.||..|++.|+.+.. +..++.|...+.+++..+|..++.+|..+.+..+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-------- 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-------- 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch--------
Confidence 45678899999999999999999997641 345677777788888899999999998876544431
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH
Q 001062 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL 206 (1167)
Q Consensus 127 ~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~ 206 (1167)
+.|...|.++ ++.||..+++.|+.+-. +. ...++..+.++++.||..|+.+|+.+..
T Consensus 687 ---~~L~~~L~~~--d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~------- 743 (897)
T PRK13800 687 ---PALRDHLGSP--DPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSVDD------- 743 (897)
T ss_pred ---HHHHHHhcCC--CHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC-------
Confidence 2344445543 68999999999887521 11 1245667889999999999999998632
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC
Q 001062 207 AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1167)
Q Consensus 207 ~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~ 286 (1167)
.+.+...+.+++ .++|..+..+++.+.... ...++.+...+++ +++++|.+++.+|..+-. +
T Consensus 744 ---~~~l~~~l~D~~--~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~--~ 805 (897)
T PRK13800 744 ---VESVAGAATDEN--REVRIAVAKGLATLGAGG--------APAGDAVRALTGD---PDPLVRAAALAALAELGC--P 805 (897)
T ss_pred ---cHHHHHHhcCCC--HHHHHHHHHHHHHhcccc--------chhHHHHHHHhcC---CCHHHHHHHHHHHHhcCC--c
Confidence 123455566664 489999999988775422 1235667777777 789999999998876521 1
Q ss_pred ccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHH
Q 001062 287 RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSK 366 (1167)
Q Consensus 287 ~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~ 366 (1167)
+.+++.+...+. |.+|.||++|+.+|+.+-.
T Consensus 806 -------~~~~~~l~~aL~----------------------------------d~d~~VR~~Aa~aL~~l~~-------- 836 (897)
T PRK13800 806 -------PDDVAAATAALR----------------------------------ASAWQVRQGAARALAGAAA-------- 836 (897)
T ss_pred -------chhHHHHHHHhc----------------------------------CCChHHHHHHHHHHHhccc--------
Confidence 112223333332 1249999999999986521
Q ss_pred HHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHH
Q 001062 367 LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGA 446 (1167)
Q Consensus 367 ~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~ 446 (1167)
+..++.|+..++|.++.||.++..+|+.+ .+. |...+.+.+.+++.+..+|..+
T Consensus 837 --~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~---------------------~~a~~~L~~al~D~d~~Vr~~A 890 (897)
T PRK13800 837 --DVAVPALVEALTDPHLDVRKAAVLALTRW---PGD---------------------PAARDALTTALTDSDADVRAYA 890 (897)
T ss_pred --cchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCC---------------------HHHHHHHHHHHhCCCHHHHHHH
Confidence 23446777888999999999999998774 110 3455666778889999999998
Q ss_pred HHHHH
Q 001062 447 FSVLR 451 (1167)
Q Consensus 447 ~~~l~ 451 (1167)
...|.
T Consensus 891 ~~aL~ 895 (897)
T PRK13800 891 RRALA 895 (897)
T ss_pred HHHHh
Confidence 87764
No 36
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.25 E-value=7.9e-06 Score=95.69 Aligned_cols=614 Identities=14% Similarity=0.115 Sum_probs=300.6
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCC--CcchhcHHHHHHHHHHhhcCCchhHHHHHHH
Q 001062 50 IVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTTSSLAQSIHTS 127 (1167)
Q Consensus 50 ~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~--~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~ 127 (1167)
.++...-|+++.||.+|.+.+.++-.. +.+-..|+..+.++ .-..|.+|..-|+..+++.-..
T Consensus 8 ~~L~~~ls~d~~vr~~AE~~l~qle~~------~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~--------- 72 (1005)
T KOG2274|consen 8 ELLSGSLSADQNVRSQAETQLKQLELT------EGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSP--------- 72 (1005)
T ss_pred HHHHhhcCCChhHHHHHHHHHhccccc------hHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCC---------
Confidence 345566699999999999988776421 23556677666654 3357899998888877654321
Q ss_pred HHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHH
Q 001062 128 LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLA 207 (1167)
Q Consensus 128 i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~ 207 (1167)
......++. .+.+ +....+-..++..+.+++.++|+.+..|++.++...-++.|.
T Consensus 73 ----~~E~fr~~~---~~~e------------------~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~Wp 127 (1005)
T KOG2274|consen 73 ----NFEAFRYPL---IVSE------------------EVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWP 127 (1005)
T ss_pred ----hHhhccCCC---cccH------------------HHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhH
Confidence 111111111 0110 122233344455555777799999999999999998888899
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHH-----HHHHHHH
Q 001062 208 KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYS-----LQALESF 281 (1167)
Q Consensus 208 ~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~a-----l~~l~~l 281 (1167)
++++.+...+.+.+. .....+++++..+..-.-..-.++. +-..+-+.....-.....+-.|-.+ +..+-.+
T Consensus 128 Elv~~i~~~l~~~n~--n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~l 205 (1005)
T KOG2274|consen 128 ELVPFILKLLSSGNE--NSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTL 205 (1005)
T ss_pred HHHHHHHHHHhccch--hhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHH
Confidence 999999999987543 4556778888777765421111111 1222222222111000112222111 1112222
Q ss_pred HHhCCc----cccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q 001062 282 LLRCPR----DISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1167)
Q Consensus 282 ~~~~~~----~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li 357 (1167)
++...+ ..+.++.++++..+..+.+-=. -.+-..|-.|..-.+++..+.
T Consensus 206 i~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~---------------------------~~~g~~~~~~~eilk~~t~l~ 258 (1005)
T KOG2274|consen 206 ITNVEEVWAEHVKVFLSQILNQFMDILEHPLQ---------------------------RNDGSDFSLRMEILKCLTQLV 258 (1005)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---------------------------ccccchHHHHHHHHHHHHHHH
Confidence 222221 1234444444443333321000 001134889999999999999
Q ss_pred hcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHH-HHHHHhhCCCCCCccCCCCCch-HHHHHHHHHHHHHHHHHHh
Q 001062 358 VSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTF-IELVRQTGNVTKGQIDNNELNP-RWLLKQEVSKIVKSINRQL 435 (1167)
Q Consensus 358 ~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l-~~l~~~~~~~~~~~~~~~~~~p-~~~l~~~~~~l~~~l~~~L 435 (1167)
+.+|..+.++....+|..-.. .......+ .+-+.+++..-..+.+ ..| ...+...+-.++..+...+
T Consensus 259 ~nfp~~~~~~~~~~~~~vw~~--------~~~~~~~yir~~V~~~e~~~~~~~d---sd~e~~~~~~l~i~i~eF~s~i~ 327 (1005)
T KOG2274|consen 259 ENFPSLINPFMMGMFSIVWQT--------LEKILAVYVRESVNGTEDSYDARYD---SDPEEKSVETLVIQIVEFLSTIV 327 (1005)
T ss_pred HhhHHhhhHHHHhhhhHHHHH--------HHHHHhhhhhhhccccccCcccccC---CchhhhChHHhhhhHHHHHHHHH
Confidence 998866655555555443221 11111111 0111111111001111 111 0112222233333333222
Q ss_pred ccCCh--hhHHHHHHHHHHHHHhcCchhHhhhhhh-HHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhh
Q 001062 436 REKSI--KTKVGAFSVLRELVVVLPDCLADHIGSL-IPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKAL 512 (1167)
Q Consensus 436 ~~~~~--~~r~~~~~~l~~l~~~~~~~l~~~l~~l-~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l 512 (1167)
+.... .++.....++..++.. -.+..+--.+ ..-..+...|.+.....++.+-..+-.++...+.+...+..+..
T Consensus 328 t~~~~~~ti~~~l~~lI~~~v~y--~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~ 405 (1005)
T KOG2274|consen 328 TNRFLSKTIKKNLPELIYQLVAY--LQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFGNEGINPIQDAA 405 (1005)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHH--HHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhccchhhhHHHHHH
Confidence 11000 0000000000000000 0000000000 00001111222222245666666666666555544444433332
Q ss_pred HHHHHHH-----hcC-CchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001062 513 SSPVLAA-----VGE-RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMG 586 (1167)
Q Consensus 513 l~~l~~~-----l~d-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg 586 (1167)
-..+... +++ .++++...-+...... +. +.....++..++..+...+..+ ..+..-.+|+.+++
T Consensus 406 ~~~~~es~at~~~~~~~~wk~qea~l~a~~~~----~~-----~~~~dd~l~~l~~~~~~~l~~~-e~P~Ll~Ra~~~i~ 475 (1005)
T KOG2274|consen 406 GRHFQESQATYLFNNESWWKIQEALLVAAESV----RI-----DDANDDKLIELTIMIDNGLVYQ-ESPFLLLRAFLTIS 475 (1005)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHhhc----cc-----CcchHHHHHHHHHHHHhhcccc-cCHHHHHHHHHHHH
Confidence 2222211 122 2344443333333222 21 1123446666776666666543 34566669999999
Q ss_pred HHHHhcCcccccchhhhHHHHHHhhcCc---hhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001062 587 LVISTFGDNLGAELPACLPVLVDRMGNE---ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATL 663 (1167)
Q Consensus 587 ~l~~~~g~~l~~~~~~~l~~L~~~L~~e---~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al 663 (1167)
.+...... -.+.+..++...+..+.-+ ..|..|++++.-.+. ..-+.+..+.++.-|..+..+....+-..-+
T Consensus 476 ~fs~~~~~-~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~---~~vl~~~~p~ild~L~qlas~~s~evl~llm 551 (1005)
T KOG2274|consen 476 KFSSSTVI-NPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK---VKVLLSLQPMILDGLLQLASKSSDEVLVLLM 551 (1005)
T ss_pred HHHhhhcc-chhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC---ceeccccchHHHHHHHHHcccccHHHHHHHH
Confidence 87755321 1124455555555555433 356666666654442 1234667777888888877777777777778
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhhhc--CCCchhhHHHHHHHHHHHhhcccCCCchhhhhhhchHHHHHHHhhhcc
Q 001062 664 GTMNSLVVAYGDKIGASAYEVIIVELSTLI--SDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSL 741 (1167)
Q Consensus 664 ~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l--~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~ 741 (1167)
++|+..+.--++ .+...-..+.+.+..+. ..+|+.+...+.+++..+++.. .....+....+|.+++.+..+.
T Consensus 552 E~Ls~vv~~dpe-f~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~----~~~g~m~e~~iPslisil~~~~ 626 (1005)
T KOG2274|consen 552 EALSSVVKLDPE-FAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA----ANYGPMQERLIPSLISVLQLNA 626 (1005)
T ss_pred HHHHHHhccChh-hhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH----HhhcchHHHHHHHHHHHHcCcc
Confidence 888877654332 22222223344433332 4578888888888888887752 2233478889999999987653
Q ss_pred c--hhhhHHHHHHHHHHHHhccCCC
Q 001062 742 L--QGQALVALQSFFAALVYSANTS 764 (1167)
Q Consensus 742 l--~~~~l~~~~~~~~~l~~~~~~~ 764 (1167)
- ........++++..+.+..++.
T Consensus 627 ~~~~~~l~~~aidvLttvvr~tp~p 651 (1005)
T KOG2274|consen 627 DKAPAGLCAIAIDVLTTVLRNTPSP 651 (1005)
T ss_pred cccCchhhHHHHHHHHHHHhcCCCC
Confidence 1 1111233556666667666543
No 37
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.18 E-value=1.6e-09 Score=137.74 Aligned_cols=274 Identities=18% Similarity=0.160 Sum_probs=192.7
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
.+..|++.+.|+|+++|..|...|.+.- .+..++.|.+.|+|++.+||..|+..|+.+....+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~---- 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA---- 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch----
Confidence 4567888899999999999999987532 2457888889999999999999999999886544321
Q ss_pred HHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccch
Q 001062 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1167)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l 164 (1167)
+.|...+.++++.+|..+..+|..+-. .. .+.++..|.++ ++.||..++..|+.+ +.
T Consensus 687 --~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-----------~~~l~~~L~D~--d~~VR~~Av~aL~~~----~~-- 743 (897)
T PRK13800 687 --PALRDHLGSPDPVVRAAALDVLRALRA--GD-----------AALFAAALGDP--DHRVRIEAVRALVSV----DD-- 743 (897)
T ss_pred --HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-----------HHHHHHHhcCC--CHHHHHHHHHHHhcc----cC--
Confidence 234455566777788888777775321 11 12344556655 689999999999864 11
Q ss_pred hHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhh
Q 001062 165 SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR 244 (1167)
Q Consensus 165 ~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~ 244 (1167)
.+.++..+.++++.||..++.+|+.+...-... ++.+...+++++ ..+|..++.+++.+...
T Consensus 744 -------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~-----~~~L~~ll~D~d--~~VR~aA~~aLg~~g~~---- 805 (897)
T PRK13800 744 -------VESVAGAATDENREVRIAVAKGLATLGAGGAPA-----GDAVRALTGDPD--PLVRAAALAALAELGCP---- 805 (897)
T ss_pred -------cHHHHHHhcCCCHHHHHHHHHHHHHhccccchh-----HHHHHHHhcCCC--HHHHHHHHHHHHhcCCc----
Confidence 123566788999999999999999887543321 344556666654 58898888888777321
Q ss_pred hhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccc
Q 001062 245 FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYE 324 (1167)
Q Consensus 245 ~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~ 324 (1167)
+.+.+.+...+.+ ++..+|..|.++|+.+-. ++.++.+.+.++
T Consensus 806 -----~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~------------------- 848 (897)
T PRK13800 806 -----PDDVAAATAALRA---SAWQVRQGAARALAGAAA----------DVAVPALVEALT------------------- 848 (897)
T ss_pred -----chhHHHHHHHhcC---CChHHHHHHHHHHHhccc----------cchHHHHHHHhc-------------------
Confidence 2234557777777 788999999999875421 223344444442
Q ss_pred cccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHH
Q 001062 325 EEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFI 395 (1167)
Q Consensus 325 ~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~ 395 (1167)
|.+|.||++|+.+|+.+ ... ....+.|...++|.+..||..+..++.
T Consensus 849 ---------------D~~~~VR~~A~~aL~~~-~~~--------~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 849 ---------------DPHLDVRKAAVLALTRW-PGD--------PAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred ---------------CCCHHHHHHHHHHHhcc-CCC--------HHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 23589999999999875 111 134556667788999999999888775
No 38
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.17 E-value=4.6e-05 Score=89.56 Aligned_cols=234 Identities=11% Similarity=0.111 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhccC-ChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCC
Q 001062 425 SKIVKSINRQLREK-SIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPP 503 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~-~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~ 503 (1167)
..+...+...+... .+..-..++.++..+....+-. .+.+..++.....++... ....+++.|+..+.... +++
T Consensus 448 ~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~-~~~~~~fl~~~v~~l~~~-~~~~~ki~a~~~~~~~~---~~~ 522 (1005)
T KOG2274|consen 448 IELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVIN-PQLLQHFLNATVNALTMD-VPPPVKISAVRAFCGYC---KVK 522 (1005)
T ss_pred HHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhhccC-CCCchhHHHHHHHHhcc---Cce
Confidence 34444444444322 2322224444455444432110 112344444444444422 24568888887777666 456
Q ss_pred chhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 001062 504 VFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAIS 583 (1167)
Q Consensus 504 ~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~ 583 (1167)
.+.++.+.++..+.+...+....+-.--+.++...++. .|.... .... .+.|..+........|+-|-..+-.
T Consensus 523 vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~a---s~~s---kI~P~~i~lF~k~s~DP~V~~~~qd 595 (1005)
T KOG2274|consen 523 VLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAA---SMES---KICPLTINLFLKYSEDPQVASLAQD 595 (1005)
T ss_pred eccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-Chhhhh---hhhc---chhHHHHHHHHHhcCCchHHHHHHH
Confidence 77888888999888888766666666556666666643 332110 0111 2233222222222345666666666
Q ss_pred HHHHHHHhcCcccccchhhhHHHHHHhhcCch------hhHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHHH-HHhh
Q 001062 584 CMGLVISTFGDNLGAELPACLPVLVDRMGNEI------TRLTAVKAFAVIAASPLHIDLT-CVLEHVIAELTAFL-RKAN 655 (1167)
Q Consensus 584 alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~------~r~~a~~al~~i~~~~~~~~~~-~~~~~~l~~L~~~L-~~~~ 655 (1167)
++..++.. ....+|+...++|.++.-++.+. ....++..++.+.... +.++. ..+..+.|.+.... -+.|
T Consensus 596 ~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t-p~pL~~~l~~~~FpaVak~tlHsdD 673 (1005)
T KOG2274|consen 596 LFEELLQI-AANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT-PSPLPNLLICYAFPAVAKITLHSDD 673 (1005)
T ss_pred HHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC-CCCccHHHHHHHhHHhHhheeecCC
Confidence 66666543 34566788888998888774432 3456788888777442 22232 24455555555543 3556
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001062 656 RALRQATLGTMNSLVVA 672 (1167)
Q Consensus 656 ~~lr~~al~~L~~l~~~ 672 (1167)
..+-+++-+||..++..
T Consensus 674 ~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 674 HETLQNATECLRALISV 690 (1005)
T ss_pred hHHHHhHHHHHHHHHhc
Confidence 67778888999988775
No 39
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.14 E-value=1.3e-07 Score=113.18 Aligned_cols=543 Identities=13% Similarity=0.125 Sum_probs=338.5
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHh-cCCCcchhcHHHHHHHHHHhhcCCchh
Q 001062 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKL-LNGKDQHRDIASIALKTIIAEVTTSSL 120 (1167)
Q Consensus 42 ~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~-~~~~~~~r~~a~~aL~~~~~~~~~~~~ 120 (1167)
.....+++.+-... +.+-+|+..+..-+|.+.+.++......++...+..+ ......+|+.+.-.+..++...+.+..
T Consensus 117 ~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~ 195 (759)
T KOG0211|consen 117 RTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL 195 (759)
T ss_pred hhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 34566778888888 8899999999999999998887766665555444433 334456799999999999988887422
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 001062 121 AQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASS 200 (1167)
Q Consensus 121 ~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~ 200 (1167)
...+.|.+...... + -...|..++.+++........ ..-..++.+..-+.-++..+.||+.+..-++.++.+
T Consensus 196 ----~~~lv~l~~~l~~~-d-~~~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~ 267 (759)
T KOG0211|consen 196 ----REHLVPLLKRLATG-D-WFQSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV 267 (759)
T ss_pred ----HHHHHHHHHHccch-h-hhhcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHH
Confidence 23344443322111 1 122355566665555444432 124455666666667788889999999999999999
Q ss_pred cCHHHH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 001062 201 LSDDLL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALE 279 (1167)
Q Consensus 201 ~~~~~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~ 279 (1167)
++.+.. ..+++...+...+.. +.+|..++..+..+........ +....+.+.+++..++ .+..+|......+.
T Consensus 268 ~~~~~~~s~v~~~~~~L~~Ddq--dsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d---~~~~v~~~~~~~~~ 341 (759)
T KOG0211|consen 268 LESEIVKSEVLPTLIQLLRDDQ--DSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVED---GSWRVSYMVADKFS 341 (759)
T ss_pred HHHHHHHhhccHHHhhhhhcch--hhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcC---hhHHHHHHHhhhhh
Confidence 988754 445555555555543 4789999999999888643322 4445667777766555 44555555544444
Q ss_pred HHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhc
Q 001062 280 SFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS 359 (1167)
Q Consensus 280 ~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~ 359 (1167)
.+....+.+. ..++.++.....+ .|..|.+|.+.++=...+-..
T Consensus 342 ~L~~~~~~~~--~~~~~~~~~~~l~----------------------------------~~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 342 ELSSAVGPSA--TRTQLVPPVSNLL----------------------------------KDEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred hHHHHhcccc--CcccchhhHHHHh----------------------------------cchhhhhhHHhhcchHHHhhh
Confidence 4443333211 1111122222111 134588888877555444332
Q ss_pred CC--hhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhcc
Q 001062 360 RP--EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE 437 (1167)
Q Consensus 360 ~~--~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~ 437 (1167)
.. ....-..+.++|.+..-..+.++.||.........+.-..+ ..+.++.+.+.....+++
T Consensus 386 l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-----------------k~~ti~~llp~~~~~l~d 448 (759)
T KOG0211|consen 386 LNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-----------------KERTISELLPLLIGNLKD 448 (759)
T ss_pred cCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-----------------cCcCccccChhhhhhcch
Confidence 11 11111233446666555567778888654333322211111 123345556666777778
Q ss_pred CChhhHHHHHHHHHHHHHhcC-chhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHH
Q 001062 438 KSIKTKVGAFSVLRELVVVLP-DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPV 516 (1167)
Q Consensus 438 ~~~~~r~~~~~~l~~l~~~~~-~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l 516 (1167)
..+.+|......+..+-...+ .+...+.+..+|.+...-.|. .++++.+.+..+..++...+.+.+. +.+.+.+
T Consensus 449 e~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~~~~~~---~~~~~l~ 523 (759)
T KOG0211|consen 449 EDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLGVEFFD---EKLAELL 523 (759)
T ss_pred hhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhhhHHhh---HHHHHHH
Confidence 788888877766655544442 344556777788777766665 5788888888888877654422222 3455555
Q ss_pred HHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCccc
Q 001062 517 LAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNL 596 (1167)
Q Consensus 517 ~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l 596 (1167)
...+.|.-+.++..|...+-.++..+|.. =+...+.+-++....+ ....+|...+.++..++..+|..+
T Consensus 524 ~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~---------w~~~~~i~k~L~~~~q--~~y~~R~t~l~si~~la~v~g~ei 592 (759)
T KOG0211|consen 524 RTWLPDHVYSIREAAARNLPALVETFGSE---------WARLEEIPKLLAMDLQ--DNYLVRMTTLFSIHELAEVLGQEI 592 (759)
T ss_pred HhhhhhhHHHHHHHHHHHhHHHHHHhCcc---------hhHHHhhHHHHHHhcC--cccchhhHHHHHHHHHHHHhccHH
Confidence 66677888899999999999999887741 2445566666555542 246789999999999999988765
Q ss_pred ccchhhhHHHHHHhhcC--chhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 001062 597 GAELPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAY 673 (1167)
Q Consensus 597 ~~~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~ 673 (1167)
+...++|.+.+...+ .++|..+++.+..+..--.. ...=..+.|.+..+.+.++..+|..|..+++.+....
T Consensus 593 --~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~---~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 593 --TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE---SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred --HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch---HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence 456778888775544 35788999998887632111 1122334444444455778889999999888876543
No 40
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.12 E-value=6e-05 Score=93.14 Aligned_cols=568 Identities=16% Similarity=0.174 Sum_probs=295.8
Q ss_pred hHHHHHHHHHhcC--CChhHHhHh---HHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHhhh
Q 001062 3 NLQMAAILEKITG--KDKDFRYMA---TSDLLNELNKESFKADADLEVKLSNIVVQQLDDVA--GDVSGLAVKCLAPLVK 75 (1167)
Q Consensus 3 ~~~i~~ll~~~~~--~d~d~R~mA---l~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~--~~Vr~~A~~~l~~l~~ 75 (1167)
+..++.+|+|..+ .+.|+|..= +.||...++.+..-..+..+..+...|+....+.+ -.+|.++..-||.++.
T Consensus 580 ~~fl~~fL~rc~s~~~e~d~r~LfeNfvqDLLs~ln~PEWPatE~ILs~Lg~~Lv~~~s~ks~~~sir~asLdlLG~Iaa 659 (1692)
T KOG1020|consen 580 NHFLTTFLERCFSKQGEEDYRILFENFVQDLLSALNLPEWPATELILSLLGKLLVHNFSNKSVDVSIRTASLDLLGTIAA 659 (1692)
T ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHccCCcCccHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 4556778888755 456899653 45677777764433334445555555666556544 4579999999999998
Q ss_pred hcChhhHHHHHHHHHHHhcCC-----CcchhcHHHHH----HHHHHhhcCCc----------hhHHHHHHHHHHHHHHhh
Q 001062 76 KVSEPRVVEMTDKLCIKLLNG-----KDQHRDIASIA----LKTIIAEVTTS----------SLAQSIHTSLTPQLTKGI 136 (1167)
Q Consensus 76 ~~~~~~~~~l~~~L~~~~~~~-----~~~~r~~a~~a----L~~~~~~~~~~----------~~~~~~~~~i~p~Ll~~l 136 (1167)
++..+.+...++. +..+. ..+-....+.- |--++.....+ -....+...+.-.....+
T Consensus 660 rLrkd~v~s~l~~---g~v~~~~~~~s~~~~~~k~~~l~~~Lldfl~~~~~~~~~~~v~~~~fyi~~w~~d~~le~~~~~ 736 (1692)
T KOG1020|consen 660 RLRKDAVLSKLEQ---GSVDRELDQDSEEKHNIKLIVLQKTLLDFLKSNTEETALSEVYACHFYIAQWYRDTRLETILIM 736 (1692)
T ss_pred HHHHHHHHHHHhh---ccchhhhhhcccccccchhhhhHHHHHHHHHHhhhccchhhHHHhhHHHHhHHHHHHHHHHHHH
Confidence 8877765553222 11110 00000111111 11111111100 011112112211111222
Q ss_pred hcc---CCChhHH-HHHHHHHHHHHHHhccchhHHHHHHHHH--HhhhhcCChH-HHHHHHHHHHHHHHhhcCHH-HHHH
Q 001062 137 TLK---DMNTEIR-CECLDILCDVLHKFGNLMSNDHERLLSA--LLPQLSANQA-SVRKKSVSCIASLASSLSDD-LLAK 208 (1167)
Q Consensus 137 ~~~---~~~~~v~-~~~~~~L~~l~~~~g~~l~~~~~~l~~~--ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~-~~~~ 208 (1167)
... +.+..+. ...++.....+...+..+.-+...|.+. -....+.+.+ ..+..|....-.++...+=. .|+.
T Consensus 737 ~~~kd~~s~~~~~~~~~~el~~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~ 816 (1692)
T KOG1020|consen 737 EENKDVDSNEGTHHWFSFELAYEKVITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDP 816 (1692)
T ss_pred HhccCccccccchhHHHHHHHHHHHhhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHH
Confidence 111 1111111 1112222222222222222222222222 0001111111 23333333333333332222 3788
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcc
Q 001062 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD 288 (1167)
Q Consensus 209 l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~ 288 (1167)
++..++..+.++. ...|-.|+.+++.|+...|..+.. +.+-..+..-+.+ ..--|||+|+..++.++.+.|+.
T Consensus 817 yLk~Il~~l~e~~--ialRtkAlKclS~ive~Dp~vL~~--~dvq~~Vh~R~~D---ssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 817 YLKLILSVLGENA--IALRTKALKCLSMIVEADPSVLSR--PDVQEAVHGRLND---SSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHHHHHHhcCch--HHHHHHHHHHHHHHHhcChHhhcC--HHHHHHHHHhhcc---chhHHHHHHHHHHhhhhhccHHH
Confidence 8999999998664 478999999999999987765431 4444445555555 67789999999999999998877
Q ss_pred ccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHH
Q 001062 289 ISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY 368 (1167)
Q Consensus 289 ~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~ 368 (1167)
+..|...|++-++ |++-.||+-+++-+..+-...|+.- ..
T Consensus 890 ~~qyY~~i~erIl--------------------------------------DtgvsVRKRvIKIlrdic~e~pdf~--~i 929 (1692)
T KOG1020|consen 890 IFQYYDQIIERIL--------------------------------------DTGVSVRKRVIKILRDICEETPDFS--KI 929 (1692)
T ss_pred HHHHHHHHHhhcC--------------------------------------CCchhHHHHHHHHHHHHHHhCCChh--hH
Confidence 6667766665331 2345899999999999999888632 23
Q ss_pred HHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCcc-----------------CCCCCchHHH------------
Q 001062 369 EEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQI-----------------DNNELNPRWL------------ 419 (1167)
Q Consensus 369 ~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~-----------------~~~~~~p~~~------------ 419 (1167)
..++..++.|.+|.|.+|+.=+..+|..+.-...+.+-.+. ..+-......
T Consensus 930 ~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~ 1009 (1692)
T KOG1020|consen 930 VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKT 1009 (1692)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh
Confidence 34555667788888888888777777766543322110000 0000000000
Q ss_pred --------HHHHHHHHHHHHHHHhc------------cCChhhH-HHHHHHHHHHHHhcCchhH-hhhhhhHHHHHHhcc
Q 001062 420 --------LKQEVSKIVKSINRQLR------------EKSIKTK-VGAFSVLRELVVVLPDCLA-DHIGSLIPGIEKSLN 477 (1167)
Q Consensus 420 --------l~~~~~~l~~~l~~~L~------------~~~~~~r-~~~~~~l~~l~~~~~~~l~-~~l~~l~~~l~~~l~ 477 (1167)
....+...+..+..++. .++..+| .+++.+|..++...|.-+. .|+..+-|.+... .
T Consensus 1010 ~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~-~ 1088 (1692)
T KOG1020|consen 1010 MKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSK-A 1088 (1692)
T ss_pred hhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhcc-c
Confidence 00001111111111111 1112233 4566777777777787776 7888888887654 1
Q ss_pred cCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccch
Q 001062 478 DKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYV 557 (1167)
Q Consensus 478 d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l 557 (1167)
+......+.......+..++.-.. +.-..++..|=..+++.+--.......+|.-|++.++...... ...+
T Consensus 1089 ~t~~~~~fl~~vi~Ile~VlPlv~-~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~--------~~~v 1159 (1692)
T KOG1020|consen 1089 STIEEAQFLYYVIQILECVLPLVA-NPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDG--------AKVV 1159 (1692)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhc-cchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccc--------hHHH
Confidence 111112233333344444433211 1112345555555555554445567788899999998764331 2345
Q ss_pred HHHHHHHHHHhhc---C---CCC---HHHHHHHHHHHHHHHHhcC--------cccc----cchhhhHHHHHHh--hcCc
Q 001062 558 QPIYNAIMSRLTN---Q---DQD---QEVKECAISCMGLVISTFG--------DNLG----AELPACLPVLVDR--MGNE 614 (1167)
Q Consensus 558 ~~l~~~ll~~l~~---~---d~~---~~vr~~Ai~alg~l~~~~g--------~~l~----~~~~~~l~~L~~~--L~~e 614 (1167)
..++..++..+.- + +.+ -..-.+++.++|.+.+++. .... ...+.++..|+.. ..+.
T Consensus 1160 ~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~ 1239 (1692)
T KOG1020|consen 1160 KACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDG 1239 (1692)
T ss_pred HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhh
Confidence 5555555544432 1 111 1234689999999998762 1111 1334555555533 3456
Q ss_pred hhhHHHHHHHHHHhcC
Q 001062 615 ITRLTAVKAFAVIAAS 630 (1167)
Q Consensus 615 ~~r~~a~~al~~i~~~ 630 (1167)
..|..|+.++|.++..
T Consensus 1240 ~lR~~al~~Lg~~ci~ 1255 (1692)
T KOG1020|consen 1240 ELRRKALINLGFICIQ 1255 (1692)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 7899999999999844
No 41
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.6e-05 Score=90.12 Aligned_cols=206 Identities=13% Similarity=0.152 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhc--cCCCCchhhhhHhhHHHHHHH
Q 001062 442 TKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS--SHSPPVFHPYIKALSSPVLAA 519 (1167)
Q Consensus 442 ~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~--~~~~~~~~~~l~~ll~~l~~~ 519 (1167)
.|.....+++.++++- ...+.-+.+-..+.+.+.|.+ +-.++.++...++.+++ +..++.|.||++.+...+.+.
T Consensus 503 iRRRVa~ilg~Wvsvq--~~~e~k~l~Y~a~lnLL~d~~-D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkl 579 (978)
T KOG1993|consen 503 IRRRVAWILGQWVSVQ--QKLELKPLLYCAFLNLLQDQN-DLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKL 579 (978)
T ss_pred HHHHHHHHHhhhhhee--chHhHHHHHHHHHHHhcCccc-cceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHH
Confidence 3444555777777632 111123334445666676654 45689999999999887 345788999998888777776
Q ss_pred hcCC-chHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCccccc
Q 001062 520 VGER-YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA 598 (1167)
Q Consensus 520 l~d~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~ 598 (1167)
+..- ...-+...+.+++.+++.+++. ..||...++..+=.........+-+|.+-+.++.+++...|..-.+
T Consensus 580 l~~~~e~Dtk~~VL~~ls~lI~r~~e~-------I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~ 652 (978)
T KOG1993|consen 580 LKAVEECDTKTSVLNLLSTLIERVSEH-------IAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFE 652 (978)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCcc
Confidence 6421 2244566788999998877653 4577666665443444333445568888899999999999876545
Q ss_pred chhhhHHHHHHhhcCch-----hhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHH
Q 001062 599 ELPACLPVLVDRMGNEI-----TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALR 659 (1167)
Q Consensus 599 ~~~~~l~~L~~~L~~e~-----~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr 659 (1167)
..+-++|++--..+-+. .-+-++..++...... ..+.|-+-.++|.|...+..+.+.++
T Consensus 653 ~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~--~~l~p~ll~L~p~l~~~iE~ste~L~ 716 (978)
T KOG1993|consen 653 FYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNS--QKLTPELLLLFPHLLYIIEQSTENLP 716 (978)
T ss_pred chHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcc--cccCHHHHHHHHHHHHHHHhhhhhHH
Confidence 55666666654432221 2356777777665432 22456666777888887776666655
No 42
>PRK09687 putative lyase; Provisional
Probab=99.09 E-value=1.2e-08 Score=110.56 Aligned_cols=255 Identities=15% Similarity=0.084 Sum_probs=176.7
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch
Q 001062 170 RLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL 249 (1167)
Q Consensus 170 ~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l 249 (1167)
.-++.|.+.|.+++..||..|+.+|+.+.. +. +++.+...+++++ ...|..++.++|.+-.... ..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~---~~----~~~~l~~ll~~~d--~~vR~~A~~aLg~lg~~~~-----~~ 88 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG---QD----VFRLAIELCSSKN--PIERDIGADILSQLGMAKR-----CQ 88 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc---ch----HHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCcc-----ch
Confidence 335556777889999999999999987763 32 3334444455553 4789999999999754210 03
Q ss_pred hhhHHHHHHHh-hhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccc
Q 001062 250 GDTVPVLIDYC-TSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEE 328 (1167)
Q Consensus 250 ~~lvp~l~~~l-~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d 328 (1167)
...+|.+...+ ++ .+++||.++..+++.+... .. .+.+.+++.+...+.
T Consensus 89 ~~a~~~L~~l~~~D---~d~~VR~~A~~aLG~~~~~---~~-~~~~~a~~~l~~~~~----------------------- 138 (280)
T PRK09687 89 DNVFNILNNLALED---KSACVRASAINATGHRCKK---NP-LYSPKIVEQSQITAF----------------------- 138 (280)
T ss_pred HHHHHHHHHHHhcC---CCHHHHHHHHHHHhccccc---cc-ccchHHHHHHHHHhh-----------------------
Confidence 46777777663 44 7889999999999876322 11 123344444433332
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCc
Q 001062 329 DESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQ 408 (1167)
Q Consensus 329 ~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 408 (1167)
|.+|.||++|+.+|+.+-. +..++.|+..++|.++.||..+..+++.+ . .
T Consensus 139 -----------D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~-~-~------- 188 (280)
T PRK09687 139 -----------DKSTNVRFAVAFALSVIND----------EAAIPLLINLLKDPNGDVRNWAAFALNSN-K-Y------- 188 (280)
T ss_pred -----------CCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC-C-C-------
Confidence 1258999999999974421 34667888888999999999999999876 1 1
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHH
Q 001062 409 IDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIE 488 (1167)
Q Consensus 409 ~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~ 488 (1167)
.-|..++.+.+.+.+.++.+|..+...|+.+- -+..+|.|.+.+++. .++..
T Consensus 189 --------------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----------~~~av~~Li~~L~~~----~~~~~ 240 (280)
T PRK09687 189 --------------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRK----------DKRVLSVLIKELKKG----TVGDL 240 (280)
T ss_pred --------------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccC----------ChhHHHHHHHHHcCC----chHHH
Confidence 11566777888889999999999998887652 246678888888764 36777
Q ss_pred HHHHHHHHhccCCCCchhhhhHhhHHHHHHHhc-CCchHHHHHHHHHHHH
Q 001062 489 ALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG-ERYYKVTAEALRVCGE 537 (1167)
Q Consensus 489 al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~-d~~~~v~~~al~~l~~ 537 (1167)
+...++.+=. +..+|.+...++ +.+.+++..|..++.+
T Consensus 241 a~~ALg~ig~-----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 241 IIEAAGELGD-----------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHhcCC-----------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 7777776522 355777777775 6678899888887754
No 43
>PRK09687 putative lyase; Provisional
Probab=99.06 E-value=1.5e-08 Score=109.69 Aligned_cols=240 Identities=13% Similarity=0.030 Sum_probs=167.3
Q ss_pred hHHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhH
Q 001062 3 NLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV 82 (1167)
Q Consensus 3 ~~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~ 82 (1167)
.+++..|.+.+.|.|..+|..|...|.. +. ...+++.+.+++.|+++.||..|+..||++...-. ..
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~-~~----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~--~~ 88 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQL-RG----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKR--CQ 88 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHh-cC----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc--ch
Confidence 4567788889999999999999999863 11 25677777888899999999999999999864211 12
Q ss_pred HHHHHHHHHH-hcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc
Q 001062 83 VEMTDKLCIK-LLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 83 ~~l~~~L~~~-~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
...++.|... ..++++.+|..++.+|+.+...-.. .....+..+...+.++ ++.||..+...|+.+ +
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~------~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~----~ 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPL------YSPKIVEQSQITAFDK--STNVRFAVAFALSVI----N 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc------cchHHHHHHHHHhhCC--CHHHHHHHHHHHhcc----C
Confidence 3455666655 3566778899999999887543221 0112333444444444 689999999988643 2
Q ss_pred cchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 001062 162 NLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1167)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~ 241 (1167)
.+..++.|+..++++++.||..|+.+||.+. .-.+ ..++.++..+.+.++ ++|..++.++|.+-.
T Consensus 157 ------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-~~~~----~~~~~L~~~L~D~~~--~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 157 ------DEAAIPLLINLLKDPNGDVRNWAAFALNSNK-YDNP----DIREAFVAMLQDKNE--EIRIEAIIGLALRKD-- 221 (280)
T ss_pred ------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-CCCH----HHHHHHHHHhcCCCh--HHHHHHHHHHHccCC--
Confidence 2456788888888999999999999999982 2223 345667777777654 789888888876422
Q ss_pred hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhc
Q 001062 242 GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1167)
Q Consensus 242 ~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~ 305 (1167)
+..+|.+++.+++ ++ +|..+..+++.+=. ++.++.+.+++.
T Consensus 222 --------~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~ 262 (280)
T PRK09687 222 --------KRVLSVLIKELKK---GT--VGDLIIEAAGELGD----------KTLLPVLDTLLY 262 (280)
T ss_pred --------hhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCC----------HhHHHHHHHHHh
Confidence 4688899988876 33 67667777665432 355666666553
No 44
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.7e-06 Score=97.34 Aligned_cols=510 Identities=14% Similarity=0.148 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCC-cchhcHHHHHHHHHHhh-cCCch
Q 001062 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGK-DQHRDIASIALKTIIAE-VTTSS 119 (1167)
Q Consensus 42 ~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~-~~~r~~a~~aL~~~~~~-~~~~~ 119 (1167)
...+.+++.|+..|+|.+..||..|+|-+|.+..+.+..-..+.+...+..+.-.. +..=.+++.||..+... +
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl---- 412 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL---- 412 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC----
Confidence 56678899999999999999999999999999999997766777777777443211 12223788888765422 1
Q ss_pred hHHHHHHHHHHHHHHhhhccCC------ChhHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHhhhhc-CChHHHHHHHH
Q 001062 120 LAQSIHTSLTPQLTKGITLKDM------NTEIRCECLDILCDVLHKFGN-LMSNDHERLLSALLPQLS-ANQASVRKKSV 191 (1167)
Q Consensus 120 ~~~~~~~~i~p~Ll~~l~~~~~------~~~v~~~~~~~L~~l~~~~g~-~l~~~~~~l~~~ll~~l~-~~~~~vrk~a~ 191 (1167)
+...-+..++|.++.++...+. ...||..|+.+.=.+.+.+.+ .+.|+...+...++..-- +++...|++|.
T Consensus 413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 1123466788888888765321 356899999999999988766 456888888888876644 44559999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHH-hhhcCCCChhH
Q 001062 192 SCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDY-CTSASENDEEL 270 (1167)
Q Consensus 192 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~-l~~~~e~~~e~ 270 (1167)
.|+.....--++- |+-+..+...+. -....--.++..++.... .|..|...++..++.. +.. =|..+
T Consensus 493 AAlqE~VGR~~n~------p~Gi~Lis~~dy--~sV~~rsNcy~~l~~~ia-~~~~y~~~~f~~L~t~Kv~H---Wd~~i 560 (1133)
T KOG1943|consen 493 AALQENVGRQGNF------PHGISLISTIDY--FSVTNRSNCYLDLCVSIA-EFSGYREPVFNHLLTKKVCH---WDVKI 560 (1133)
T ss_pred HHHHHHhccCCCC------CCchhhhhhcch--hhhhhhhhHHHHHhHHHH-hhhhHHHHHHHHHHhccccc---ccHHH
Confidence 9887666443221 001111111111 001111234455554432 2444555555555543 444 47889
Q ss_pred HHHHHHHHHHHHHhCCcccc-ccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHH
Q 001062 271 REYSLQALESFLLRCPRDIS-SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAA 349 (1167)
Q Consensus 271 re~al~~l~~l~~~~~~~~~-~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA 349 (1167)
|+.+..++..+....|+.+. -+++++++..+ +.|+ ..|...
T Consensus 561 relaa~aL~~Ls~~~pk~~a~~~L~~lld~~l---s~~~-----------------------------------~~r~g~ 602 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPKYLADYVLPPLLDSTL---SKDA-----------------------------------SMRHGV 602 (1133)
T ss_pred HHHHHHHHHHHHHhhHHhhcccchhhhhhhhc---CCCh-----------------------------------HHhhhh
Confidence 99999999999999888877 46666665432 1111 234444
Q ss_pred HHHHHHHHhcCCh---hhH----H---HHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHH
Q 001062 350 AKCLAALIVSRPE---MLS----K---LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWL 419 (1167)
Q Consensus 350 ~~~l~~li~~~~~---~l~----~---~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~ 419 (1167)
..+.+.++..... .+. . ....++|.+..+.-.|... .-+.+++...+++..-...+-. + ..
T Consensus 603 ~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~--~lmr~~~~~~Ie~~s~s~~~~~------~-~~ 673 (1133)
T KOG1943|consen 603 FLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQG--TLMRQATLKFIEQLSLSKDRLF------Q-DF 673 (1133)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchH--HHHHHHHHHHHHHhhhccchhH------H-HH
Confidence 4444444433210 000 0 1111233333332223211 1122333333443321110000 0 11
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhcc
Q 001062 420 LKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1167)
Q Consensus 420 l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1167)
+.+.+.. .+.+.++.++ ..|.++...++.++...-..=..+..+++......+.+.+ .+..|......++.+
T Consensus 674 v~e~~~~---ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~-~~~~r~g~~lal~~l--- 745 (1133)
T KOG1943|consen 674 VIENWQM---LLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCS-EERIRRGLILALGVL--- 745 (1133)
T ss_pred HHHHHHH---HHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCch-HHHHHHHHHHHHccC---
Confidence 1122222 2333334444 6788899999988875411111112245555555555442 223333222222221
Q ss_pred CCCCchhhhh-HhhHHHHHHHh-cCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhc------C
Q 001062 500 HSPPVFHPYI-KALSSPVLAAV-GERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN------Q 571 (1167)
Q Consensus 500 ~~~~~~~~~l-~~ll~~l~~~l-~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~------~ 571 (1167)
..+.+.-++ +.+...++... +|.+..-++.++.++...++..+.. .+..-.++.+..+++.+.+ .
T Consensus 746 -p~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~------~~~~~~~k~~e~LL~~lddYttd~rG 818 (1133)
T KOG1943|consen 746 -PSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSL------LFSESIEKFRETLLNALDDYTTDSRG 818 (1133)
T ss_pred -cHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHh------hccccHHHHHHHHHHHHhhcccccCc
Confidence 111222222 23323333222 2336677888888888888876631 2333455666666666643 2
Q ss_pred CCCHHHHHHHHHHHHHHHHhcC--ccccc-chhhhHHHHHHhh--cCchhhHHHHHHHHHHhc
Q 001062 572 DQDQEVKECAISCMGLVISTFG--DNLGA-ELPACLPVLVDRM--GNEITRLTAVKAFAVIAA 629 (1167)
Q Consensus 572 d~~~~vr~~Ai~alg~l~~~~g--~~l~~-~~~~~l~~L~~~L--~~e~~r~~a~~al~~i~~ 629 (1167)
|...=||++|..++..+.-... +.+.+ ....++.-+++.- +-..+|+.|.+++..+..
T Consensus 819 DVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~ 881 (1133)
T KOG1943|consen 819 DVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVV 881 (1133)
T ss_pred cHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceee
Confidence 3334599999999998765443 33333 2233333222211 112257788888877663
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.05 E-value=5.9e-07 Score=106.60 Aligned_cols=390 Identities=16% Similarity=0.184 Sum_probs=237.3
Q ss_pred hHHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh-
Q 001062 3 NLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR- 81 (1167)
Q Consensus 3 ~~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~- 81 (1167)
.-.++..++.+... +-|+-++..++..+....+ + ...+ .+.++.+|++.+.+.=..++.+|..+........
T Consensus 2 ~~~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~-l--~~~~--~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l 74 (503)
T PF10508_consen 2 EEWINELLEELSSK--AERLEALPELKTELSSSPF-L--ERLP--EPVLFDCLNTSNREQVELICDILKRLLSALSPDSL 74 (503)
T ss_pred chHHHHHHHHHhcc--cchHHHHHHHHHHHhhhhH-H--Hhch--HHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH
Confidence 34566777777776 5688899999887765321 0 1111 1227788888877777777777877776554443
Q ss_pred HHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc
Q 001062 82 VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 82 ~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
.+.+.+.|...+.++++.+|..++.+|+.++ ....
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~---------------------------------------------~~~~ 109 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIA---------------------------------------------RHSE 109 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---------------------------------------------cCCH
Confidence 3455555555555555555555555544433 2221
Q ss_pred cchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHH-----HHHHHHHhhcCCCChHHHHHHHHHHH
Q 001062 162 NLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA-----TIEVVRNLRSKGAKPEMIRTNIQMVG 235 (1167)
Q Consensus 162 ~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l-----~~~l~~~l~~~~~~~~~r~~~~~~l~ 235 (1167)
.... -....+++.++.++.+++..|.+.|+.+|..++.+-.. ++.+ +..+...+.+++ +..|-.++.++.
T Consensus 110 ~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~--~~~l~~~~~~~~L~~l~~~~~--~~vR~Rv~el~v 185 (503)
T PF10508_consen 110 GAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG--LEQLFDSNLLSKLKSLMSQSS--DIVRCRVYELLV 185 (503)
T ss_pred HHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh--HHHHhCcchHHHHHHHHhccC--HHHHHHHHHHHH
Confidence 1111 12244677788888888899999999999999975432 3333 566666665533 356777888888
Q ss_pred HHHHHhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHH--HHHHHHHHhhccCCCCCC
Q 001062 236 ALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD--EILHLTLEYLSYDPNFTD 312 (1167)
Q Consensus 236 ~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~--~ii~~~~~~l~~dp~~~~ 312 (1167)
.++...+..+.-.. ..+++.++..+.+ +|.-++-.|++.+..++. .+.. ..|+. .+++.+...+... .
T Consensus 186 ~i~~~S~~~~~~~~~sgll~~ll~eL~~---dDiLvqlnalell~~La~-~~~g-~~yL~~~gi~~~L~~~l~~~-~--- 256 (503)
T PF10508_consen 186 EIASHSPEAAEAVVNSGLLDLLLKELDS---DDILVQLNALELLSELAE-TPHG-LQYLEQQGIFDKLSNLLQDS-E--- 256 (503)
T ss_pred HHHhcCHHHHHHHHhccHHHHHHHHhcC---ccHHHHHHHHHHHHHHHc-ChhH-HHHHHhCCHHHHHHHHHhcc-c---
Confidence 88887766554322 2488888888877 777789999999999988 3322 33333 2455555444310 0
Q ss_pred CCCCCCcccccccccchhhcCCCCCCCCc-chHHHH-HHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHH
Q 001062 313 NMEEDSDDEAYEEEEEDESANEYTDDEDA-SWKVRR-AAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDV 390 (1167)
Q Consensus 313 ~~~~d~~~~~~~~~~d~~~~~~~~dddd~-sw~vR~-aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~ 390 (1167)
+|. .-.+.- +..+..+.+....|..+...|+.++..+.+.+...+...+..+
T Consensus 257 --------------------------~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A 310 (503)
T PF10508_consen 257 --------------------------EDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVA 310 (503)
T ss_pred --------------------------cCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Confidence 000 001111 2235556666555655555667777666666667778889999
Q ss_pred HHHHHHHHHhhCCCCCCccCCCCCchHHHH----HHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhh
Q 001062 391 FNTFIELVRQTGNVTKGQIDNNELNPRWLL----KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIG 466 (1167)
Q Consensus 391 ~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l----~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~ 466 (1167)
+.+++.+.....+ - ..+ .+.+..+++.+....++.....|..++..|+.+....+..-.+.+.
T Consensus 311 ~dtlg~igst~~G------------~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~ 377 (503)
T PF10508_consen 311 FDTLGQIGSTVEG------------K-QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDIL 377 (503)
T ss_pred HHHHHHHhCCHHH------------H-HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH
Confidence 9999987643321 1 122 2345667777777777766778889999998887654432122222
Q ss_pred hhHHH-------------HHHhcccCCCCchHHHHHHHHHHHHhc
Q 001062 467 SLIPG-------------IEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1167)
Q Consensus 467 ~l~~~-------------l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1167)
.+... +...++.+ -+++|.+++.++..++.
T Consensus 378 ~~~~~w~~~~~~~~~~~~l~~~~~qP--F~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 378 SITESWYESLSGSPLSNLLMSLLKQP--FPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhcCC--chHHHHHHHHHHHHHhc
Confidence 33333 33333333 25678888888877765
No 46
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=5.2e-08 Score=109.79 Aligned_cols=355 Identities=15% Similarity=0.168 Sum_probs=246.8
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhccccc-CCChHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHhhhhcChhhH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESF-KADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEPRV 82 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~-~~~~~~~~~i~~~ll~~L~-d~~~~Vr~~A~~~l~~l~~~~~~~~~ 82 (1167)
.....++++.+.|+..++-|...+++.++++.. .++.-....+++.+...|. +.++.+|-.|+-+|..++..-.+..-
T Consensus 67 ~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 67 NLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 356778899999999999999999999987543 2344555678999999996 88899999999999999975543211
Q ss_pred ----HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHH-HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 001062 83 ----VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1167)
Q Consensus 83 ----~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~-~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~ 157 (1167)
..-++.+...+.+++.++++.|.-||+.+..+.+. +..-+ -..+++.|+..+..+. .-.....+.-+|+.++
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~--~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD--CRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSNLC 223 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH--HHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHHHH
Confidence 13467788888899999999999999999887765 22222 2234566666666543 2245667888899988
Q ss_pred HHhccchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH----HHHHHHHHHHHhhcCCCChHHHHHHHH
Q 001062 158 HKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL----LAKATIEVVRNLRSKGAKPEMIRTNIQ 232 (1167)
Q Consensus 158 ~~~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~----~~~l~~~l~~~l~~~~~~~~~r~~~~~ 232 (1167)
+.--+.-. .....+++.+...+.+.++.|..-|+-|++.++..-++.+ -..+++.++..+.++.. .++-.++.
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLR 301 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALR 301 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHh
Confidence 76533222 5677899999999999999999999999999998877763 23478899999988764 46678899
Q ss_pred HHHHHHHHhhhhhhcc-hhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHH-HHHHHHHHhhccCCCC
Q 001062 233 MVGALSRAVGYRFGPH-LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNF 310 (1167)
Q Consensus 233 ~l~~l~~~~~~~~~p~-l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~-~ii~~~~~~l~~dp~~ 310 (1167)
++|.|+......-.-- -...+|.+...+... ..+-+|..|.|++.++....++.++..+. .+++.++..++..
T Consensus 302 aiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s--~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~--- 376 (514)
T KOG0166|consen 302 AIGNIVTGSDEQTQVVINSGALPVLSNLLSSS--PKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA--- 376 (514)
T ss_pred hccceeeccHHHHHHHHhcChHHHHHHHhccC--cchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc---
Confidence 9999877543321111 144677777777641 33448999999999998866655553322 4555666555421
Q ss_pred CCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhc-CChhhHHHH-HHHhhHHHhhhccCChhHHH
Q 001062 311 TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLY-EEACPKLIDRFKEREENVKM 388 (1167)
Q Consensus 311 ~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~-~~~~l~~~~-~~i~p~L~~~l~d~~~~vr~ 388 (1167)
..+.|+-|+-+++.+..+ .++.+.-++ ..+++.+...+.-.+..+..
T Consensus 377 -------------------------------ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~ 425 (514)
T KOG0166|consen 377 -------------------------------EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIIL 425 (514)
T ss_pred -------------------------------chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHH
Confidence 138999999999877653 344333222 22556666665444444444
Q ss_pred HHHHHHHHHHHh
Q 001062 389 DVFNTFIELVRQ 400 (1167)
Q Consensus 389 ~~~~~l~~l~~~ 400 (1167)
.++.++.-+++.
T Consensus 426 v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 426 VALDGLENILKV 437 (514)
T ss_pred HHHHHHHHHHHH
Confidence 555565555543
No 47
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=0.00018 Score=83.79 Aligned_cols=572 Identities=15% Similarity=0.177 Sum_probs=297.8
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCC--CcchhcHHHHHHHHHHh-hcCCc-------
Q 001062 49 NIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIA-EVTTS------- 118 (1167)
Q Consensus 49 ~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~--~~~~r~~a~~aL~~~~~-~~~~~------- 118 (1167)
..+.+.| +|++.||+.|.+.|..+-.. + .+--.|.+.+.++ +.+.|-+|+.++|+.|+ +-.+.
T Consensus 9 ~~l~qTl-~pdps~rk~aEr~L~~~e~q--~----~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i 81 (960)
T KOG1992|consen 9 NYLLQTL-SPDPSVRKPAERALRSLEGQ--Q----NYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKI 81 (960)
T ss_pred HHHHhcC-CCCCccCchHHHHHHHhccC--C----CchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcccc
Confidence 3333333 67889999999988876532 1 1122233334433 34678899999999997 21110
Q ss_pred --hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHH
Q 001062 119 --SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIAS 196 (1167)
Q Consensus 119 --~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~ 196 (1167)
.-...+-..|++.+++ . ...++..--++++-+.+ ..+...|+++++-+...+++.+-.+-+.....-.+
T Consensus 82 ~~~~~e~ikslIv~lMl~----s--~~~iQ~qlseal~~Ig~---~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahs 152 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLS----S--PFNIQKQLSEALSLIGK---RDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHS 152 (960)
T ss_pred chhHHHHHHHHHHHHHhc----C--cHHHHHHHHHHHHHHhc---cccchhhHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 1223344445555443 2 35666655555554432 24557899999999999987765443333333332
Q ss_pred HHhh-----cCHHHHHH--------------HHHHHHHHhhcCCCChHHHHHHHHHHHHHHH--------Hhhhhhhcch
Q 001062 197 LASS-----LSDDLLAK--------------ATIEVVRNLRSKGAKPEMIRTNIQMVGALSR--------AVGYRFGPHL 249 (1167)
Q Consensus 197 l~~~-----~~~~~~~~--------------l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~--------~~~~~~~p~l 249 (1167)
+-.- -++++|.+ ++.......+....+...-...+..+--+++ -.|+.|..|+
T Consensus 153 iFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm 232 (960)
T KOG1992|consen 153 IFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNM 232 (960)
T ss_pred HHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhH
Confidence 3321 23333222 1222222222211111212222232222222 2577899999
Q ss_pred hhhHHHHHHHhhhcC---CCC-------hhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhc---cCCCCCCCCCC
Q 001062 250 GDTVPVLIDYCTSAS---END-------EELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS---YDPNFTDNMEE 316 (1167)
Q Consensus 250 ~~lvp~l~~~l~~~~---e~~-------~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~---~dp~~~~~~~~ 316 (1167)
..-|+.+.+.++.+. +.| +++|..-.+-+...+.+++++|.||+++.+.+.-.++. -|+.|.
T Consensus 233 ~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD----- 307 (960)
T KOG1992|consen 233 KTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYD----- 307 (960)
T ss_pred HHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHH-----
Confidence 999999999998631 111 13677777888888899999999999999987655543 233320
Q ss_pred CCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHH
Q 001062 317 DSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIE 396 (1167)
Q Consensus 317 d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~ 396 (1167)
-.-..|.+-|..+.. ++ +|..+ |. .++|. .+
T Consensus 308 ---------------------------~Lvs~Al~FLt~V~~-r~-----~y~~~-------F~--~~~vl-------~~ 338 (960)
T KOG1992|consen 308 ---------------------------YLVSKALQFLTSVSR-RP-----HYAEL-------FE--GENVL-------AQ 338 (960)
T ss_pred ---------------------------HHHHHHHHHHHHHHh-hh-----hhHhh-------hc--chHHH-------HH
Confidence 222344444544433 22 11111 00 11111 11
Q ss_pred HHHhh--CCCCCCccCCCCCchHHHHHHHHH-HHHHHHHHHhccCChhhH-HHHHHHHHHHHHhcCchhHhhhhhhHHHH
Q 001062 397 LVRQT--GNVTKGQIDNNELNPRWLLKQEVS-KIVKSINRQLREKSIKTK-VGAFSVLRELVVVLPDCLADHIGSLIPGI 472 (1167)
Q Consensus 397 l~~~~--~~~~~~~~~~~~~~p~~~l~~~~~-~l~~~l~~~L~~~~~~~r-~~~~~~l~~l~~~~~~~l~~~l~~l~~~l 472 (1167)
+++.. ++..-|..+ ++... .-+..+.+-+..++..+| .+|+.++..|+..+.+...+-+...+..+
T Consensus 339 i~e~VvlpN~~lR~eD----------eElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~ 408 (960)
T KOG1992|consen 339 ICEKVVLPNLILREED----------EELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRL 408 (960)
T ss_pred HHHhhcccccccchhh----------HHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 11111 000000000 11111 123445556666666554 57888999999887554433344434333
Q ss_pred HH-hcccCCCCchHHHHHHHHHHHHhcc-----CCC---C---chhhhh-HhhHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001062 473 EK-SLNDKSSTSNLKIEALTFTRLVLSS-----HSP---P---VFHPYI-KALSSPVLAAVGERYYKVTAEALRVCGELV 539 (1167)
Q Consensus 473 ~~-~l~d~~~~~~~~~~al~~l~~l~~~-----~~~---~---~~~~~l-~~ll~~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1167)
+. ...+++.++.-+..+..++..+... +|. . ....|+ ..++|.+...-...++-++..|++-+--+-
T Consensus 409 l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR 488 (960)
T KOG1992|consen 409 LDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFR 488 (960)
T ss_pred HHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeec
Confidence 33 2334444454555566666666432 111 1 112222 445555554333445556666654432221
Q ss_pred HhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCc---------ccccchhhhHHHHHHh
Q 001062 540 RVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD---------NLGAELPACLPVLVDR 610 (1167)
Q Consensus 540 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~---------~l~~~~~~~l~~L~~~ 610 (1167)
..+ -.+++-.++|.++..++. .+.-|-.-|..++..+...-+. .+.|++..++.-+...
T Consensus 489 ~ql----------~~~~lm~~~p~li~~L~a--~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a 556 (960)
T KOG1992|consen 489 NQL----------GKEHLMALLPRLIRFLEA--ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKA 556 (960)
T ss_pred ccC----------ChHHHHHHHHHHHHhccC--cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHh
Confidence 111 245788889988888863 2445667777888877654433 3445555555555554
Q ss_pred hcCch--hhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHhCCCCChhhH-
Q 001062 611 MGNEI--TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRK-----ANRALRQATLGTMNSLVVAYGDKIGASAY- 682 (1167)
Q Consensus 611 L~~e~--~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~-----~~~~lr~~al~~L~~l~~~~~~~~~~~~~- 682 (1167)
++... ..+--++++-++..- .....-|+.+.++..|...+.+ +++.-..--++.++.++...+.. ++..+
T Consensus 557 ~s~p~~~EneylmKaImRii~i-~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~-~~~~vs 634 (960)
T KOG1992|consen 557 LSLPGKAENEYLMKAIMRIISI-LQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKA-NPSAVS 634 (960)
T ss_pred ccCCcccccHHHHHHHHHHHHh-CHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhcc-CchHHH
Confidence 43221 123345555544321 1122346677777777776643 23444445567778777765542 11222
Q ss_pred ---HHHHHHHhhhcCCCchhhHHHHHHHHHHHhhc
Q 001062 683 ---EVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1167)
Q Consensus 683 ---~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1167)
..+++.+...++.+-....+++|++++.+++.
T Consensus 635 ~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~ 669 (960)
T KOG1992|consen 635 SLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEH 669 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33343333344544456789999999999987
No 48
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.00 E-value=8.6e-07 Score=103.08 Aligned_cols=367 Identities=18% Similarity=0.273 Sum_probs=220.1
Q ss_pred HHHHHhcCCCCh---hHHHHHHHHHHHhhhh--cChhhHHHHHHHHHHHhcCCC-cchhcHHHHHHHHHHhhcCCch---
Q 001062 49 NIVVQQLDDVAG---DVSGLAVKCLAPLVKK--VSEPRVVEMTDKLCIKLLNGK-DQHRDIASIALKTIIAEVTTSS--- 119 (1167)
Q Consensus 49 ~~ll~~L~d~~~---~Vr~~A~~~l~~l~~~--~~~~~~~~l~~~L~~~~~~~~-~~~r~~a~~aL~~~~~~~~~~~--- 119 (1167)
+.++..|.|.+. .-.....+.|+.++.. +-+.....++.+|.....++. .+.-.....+|..+++......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 567778877655 3344555555555521 112223344444444433322 2223344455555555443321
Q ss_pred hHHHHHHH-HHHHHHHhhhccCC-ChhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHhhhhc---------CChH---
Q 001062 120 LAQSIHTS-LTPQLTKGITLKDM-NTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLS---------ANQA--- 184 (1167)
Q Consensus 120 ~~~~~~~~-i~p~Ll~~l~~~~~-~~~v~~~~~~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~---------~~~~--- 184 (1167)
-...+.+. ++|.+++....... +.......++.++.++...-..+. +.++.++..+...+- .+..
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~ 161 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTIS 161 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccc
Confidence 12233333 78888765543211 111234555666666555444443 344455554444332 1111
Q ss_pred HHHHHHHHHHHHHHhhcCHH----HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHh
Q 001062 185 SVRKKSVSCIASLASSLSDD----LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYC 260 (1167)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~----~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l 260 (1167)
...++.+..+..+...++++ ...+++..++....+... ...|..++++++.++...+. +..+..++..+....
T Consensus 162 ~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~-~~~~~~~~~~la~LvNK~~~--~~~l~~~l~~~~~~~ 238 (415)
T PF12460_consen 162 EQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSED-EFSRLAALQLLASLVNKWPD--DDDLDEFLDSLLQSI 238 (415)
T ss_pred cccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCC--hhhHHHHHHHHHhhh
Confidence 23455555555565555554 245577777777665543 57899999999999987432 124445555555444
Q ss_pred hhcCCCChhHHHHHHHHHHHH----HHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCC
Q 001062 261 TSASENDEELREYSLQALESF----LLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYT 336 (1167)
Q Consensus 261 ~~~~e~~~e~re~al~~l~~l----~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~ 336 (1167)
... .+++.|..++..+..+ +.+.. |...++++.++..+.
T Consensus 239 ~~~--~~~~~~~~~~~~~~Wi~KaLv~R~~----~~~~~~~~~L~~lL~------------------------------- 281 (415)
T PF12460_consen 239 SSS--EDSELRPQALEILIWITKALVMRGH----PLATELLDKLLELLS------------------------------- 281 (415)
T ss_pred ccc--CCcchhHHHHHHHHHHHHHHHHcCC----chHHHHHHHHHHHhC-------------------------------
Confidence 111 3445555555554433 33322 223333333333332
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCChhh-------------HHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCC
Q 001062 337 DDEDASWKVRRAAAKCLAALIVSRPEML-------------SKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGN 403 (1167)
Q Consensus 337 dddd~sw~vR~aA~~~l~~li~~~~~~l-------------~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~ 403 (1167)
+.++...|+++++.++...++.+ +.+|..++|.|++.+++.+...|...+.++..++++..
T Consensus 282 -----~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP- 355 (415)
T PF12460_consen 282 -----SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP- 355 (415)
T ss_pred -----ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC-
Confidence 02567788888887776643221 35888899999999988777788888999999999763
Q ss_pred CCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHH
Q 001062 404 VTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEK 474 (1167)
Q Consensus 404 ~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~ 474 (1167)
...+..+++.+++.+.+.|.-++..++.+++.++..+....|+.+.+|+..++|.+++
T Consensus 356 -------------~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 356 -------------KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred -------------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 3577889999999999999888888999999999999998899999999999999875
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.94 E-value=1.9e-06 Score=102.33 Aligned_cols=348 Identities=16% Similarity=0.197 Sum_probs=224.9
Q ss_pred HHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChh----hHHH
Q 001062 9 ILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP----RVVE 84 (1167)
Q Consensus 9 ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~----~~~~ 84 (1167)
+++++.+.++|.=-.+..-|.+.+.... . ....+++.+.+..+|..|++.||..|++.++.+++.-... .-..
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~--~-~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALS--P-DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccC--H-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 4555555555554555555555554321 1 2347899999999999999999999999999887543221 0135
Q ss_pred HHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHH-HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 001062 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1167)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~-~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~ 163 (1167)
+++.++..+.+++..+...|+.+|+.+...-+. . ..+ -..+.+.|.+.+..+ +..+|...++++..+.+.....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~--~-~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG--L-EQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh--H-HHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCHHH
Confidence 678888888888888888888888887764221 1 111 112255666655543 4678999999999998776665
Q ss_pred hhHHH-HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HH--HHHHHHHHHHhhcCCCCh---H-HHHHHHHHHH
Q 001062 164 MSNDH-ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LL--AKATIEVVRNLRSKGAKP---E-MIRTNIQMVG 235 (1167)
Q Consensus 164 l~~~~-~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~--~~l~~~l~~~l~~~~~~~---~-~r~~~~~~l~ 235 (1167)
+.... ..+++.++..+.+++..+|..++..++.++..-... ++ ..+++.+...+.+...++ . .--+.+..+|
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 53222 248999999999999999999999999999833322 22 236666666665543321 1 2223467888
Q ss_pred HHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCc-c-c----cccHHHHHHHHHHhhccCCC
Q 001062 236 ALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-D-I----SSYCDEILHLTLEYLSYDPN 309 (1167)
Q Consensus 236 ~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~-~-~----~~~l~~ii~~~~~~l~~dp~ 309 (1167)
.++...|..+....|.++..+++.+.. .|...+..|+.+++.+...... . + .+-+..++..+....+
T Consensus 275 ~la~~~~~~v~~~~p~~~~~l~~~~~s---~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~---- 347 (503)
T PF10508_consen 275 NLARVSPQEVLELYPAFLERLFSMLES---QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIK---- 347 (503)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhc----
Confidence 888876666665668888888887777 7888999999999988743211 0 1 0111112222211111
Q ss_pred CCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCCh--------hhHHHHHHHh----h-HHH
Q 001062 310 FTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPE--------MLSKLYEEAC----P-KLI 376 (1167)
Q Consensus 310 ~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~--------~l~~~~~~i~----p-~L~ 376 (1167)
..+-.+|..+..+++.++...++ .....|+... . .+.
T Consensus 348 ------------------------------~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~ 397 (503)
T PF10508_consen 348 ------------------------------SGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLM 397 (503)
T ss_pred ------------------------------CCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHH
Confidence 01225788889999888764432 1223444432 1 344
Q ss_pred hhhccCChhHHHHHHHHHHHHHHhh
Q 001062 377 DRFKEREENVKMDVFNTFIELVRQT 401 (1167)
Q Consensus 377 ~~l~d~~~~vr~~~~~~l~~l~~~~ 401 (1167)
+.++.+=+++|.+++..+..++.+.
T Consensus 398 ~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 398 SLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHhcCCchHHHHHHHHHHHHHhcCH
Confidence 5557777899999999999988653
No 50
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=0.00018 Score=82.75 Aligned_cols=631 Identities=13% Similarity=0.134 Sum_probs=301.2
Q ss_pred ChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHh-----cCCC----ChhHHHHHHHHHHHhhhhcChhhHHHHHH
Q 001062 17 DKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQ-----LDDV----AGDVSGLAVKCLAPLVKKVSEPRVVEMTD 87 (1167)
Q Consensus 17 d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~-----L~d~----~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~ 87 (1167)
++-+||--++.|...+...+.......+..|-..+... +++. -+-++|.+...++.|.-...+..|+.++.
T Consensus 52 ~d~vkf~clqtL~e~vrekyne~nl~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~ 131 (980)
T KOG2021|consen 52 NDLVKFYCLQTLIELVREKYNEANLNELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFD 131 (980)
T ss_pred cchhhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 33455555555555554433323333344444444433 3454 45689999999999987777788999988
Q ss_pred HHHHHhcCCCc-chhcHHHHHHHHHHhhcCCc-------h------hHHHHHHHHHHHHHHh----hh-ccCC-ChhHHH
Q 001062 88 KLCIKLLNGKD-QHRDIASIALKTIIAEVTTS-------S------LAQSIHTSLTPQLTKG----IT-LKDM-NTEIRC 147 (1167)
Q Consensus 88 ~L~~~~~~~~~-~~r~~a~~aL~~~~~~~~~~-------~------~~~~~~~~i~p~Ll~~----l~-~~~~-~~~v~~ 147 (1167)
.|...+.-+.. .--+..+--|-++=+++-.. + .-..+.+.-+|.+.+. +. ++.. ++++..
T Consensus 132 dlmsv~~~~s~~~~~dfflkvllaIdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~ 211 (980)
T KOG2021|consen 132 DLMSVFQVDSAISGLDFFLKVLLAIDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLIN 211 (980)
T ss_pred HHHHHHhcccchhhHHHHHHHHHHhhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHH
Confidence 88876643221 11222222222221121110 0 0112233344544421 11 1111 567788
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHh-----hcCC
Q 001062 148 ECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL-LAKATIEVVRNL-----RSKG 221 (1167)
Q Consensus 148 ~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~-~~~l~~~l~~~l-----~~~~ 221 (1167)
.++++++..+....-.+- .-+..++.+.+.+. -..+|.+|+.|+-.++.---+.. =-.++..+.+.+ .+..
T Consensus 212 ~cLdc~g~fVSWIdInLI-aNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~d 288 (980)
T KOG2021|consen 212 SCLDCIGSFVSWIDINLI-ANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSAD 288 (980)
T ss_pred HHHHHHHHHhhhhhhhhh-hchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccc
Confidence 888888888776544332 12334555555553 23799999999988876433321 011222221111 1110
Q ss_pred --CChHHH---HHHHHHHHH--------HHHH-h---hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 001062 222 --AKPEMI---RTNIQMVGA--------LSRA-V---GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 222 --~~~~~r---~~~~~~l~~--------l~~~-~---~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~ 284 (1167)
.+.+.- -..+..+|. +-.. . ......-+-.++|++++.+.+ ++++.....+..+...+..
T Consensus 289 q~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~---e~ddit~~ifpFlsdyl~~ 365 (980)
T KOG2021|consen 289 QMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNN---EFDDITAKIFPFLSDYLAF 365 (980)
T ss_pred cccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcc---cchhhHHHHHHHHHHHHHH
Confidence 111111 111121111 1000 0 011222234589999999988 7777776666666655543
Q ss_pred CCc------cccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHh
Q 001062 285 CPR------DISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIV 358 (1167)
Q Consensus 285 ~~~------~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~ 358 (1167)
..+ .-..++.+++..+.+-++|||.|..+++-.+ +|++ +.--.+|+---..++.+..
T Consensus 366 LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg-----~EeE------------a~f~e~RkkLk~fqdti~~ 428 (980)
T KOG2021|consen 366 LKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTG-----DEEE------------AFFEEVRKKLKNFQDTIVV 428 (980)
T ss_pred HhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCC-----chHH------------HHHHHHHHHHHHHHHHHHh
Confidence 322 2335788999999999999998743322000 0011 1112678776666677777
Q ss_pred cCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccC
Q 001062 359 SRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK 438 (1167)
Q Consensus 359 ~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~ 438 (1167)
-.|+.+-......+..-+...++..+....-++.-+-.+-+...+.. ....+++-++...+....+.++..- .+.
T Consensus 429 idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~-~~~nsgd~s~~~vl~~~~~ll~tsq--v~~-- 503 (980)
T KOG2021|consen 429 IDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNY-FGLNSGDISTSQVLFLNELLLMTSQ--VLA-- 503 (980)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcccccc-ccccCccccHHHHHHHHHHHHHHcc--ccc--
Confidence 77755443333333332222233333333333332222222221100 0001112222222333333332211 111
Q ss_pred ChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccC----CCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHH
Q 001062 439 SIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK----SSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSS 514 (1167)
Q Consensus 439 ~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~----~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~ 514 (1167)
...+...+-.+..++.+ ..|-++-+.-+|.+..++-|. +.+.++|..+..++..+++... ..+-||++.++.
T Consensus 504 -h~h~lVqLlfmE~ivRY--~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk-kqlvpfie~iln 579 (980)
T KOG2021|consen 504 -HDHELVQLLFMELIVRY--NKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK-KQLVPFIEEILN 579 (980)
T ss_pred -CCchHHHHHHHHHHHHH--HHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 12334444444555542 223222333445555444432 3356789899999999888643 345567777777
Q ss_pred HHHHHhcCCc------------hHHHHHHHHHHHHHHHhccCC---ccc--cCCCCccchH-HHHHHHHHHhhcCCCC-H
Q 001062 515 PVLAAVGERY------------YKVTAEALRVCGELVRVLRPS---VEG--LGFDFKPYVQ-PIYNAIMSRLTNQDQD-Q 575 (1167)
Q Consensus 515 ~l~~~l~d~~------------~~v~~~al~~l~~l~~~~~~~---~~~--~~~~~~~~l~-~l~~~ll~~l~~~d~~-~ 575 (1167)
-+...+..+. +.-...-++++|-++.. +.. .++ +..-..|.+. .+...+...+. +|.+ +
T Consensus 580 ~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l-~n~paE~qaay~~~litpl~~~~~igl~~a~la-sde~~p 657 (980)
T KOG2021|consen 580 KIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITL-NNSPAELQAAYANTLITPLILDQIIGLLFAQLA-SDEASP 657 (980)
T ss_pred HHHHHHcCcCCCcCccccccccccccceeeecceEEEeC-CCCCHHHHHHHHhcccChHHHHHHHHHHHHHHh-cccccc
Confidence 7766662111 11111122222322211 110 000 0011122222 22222233343 2333 2
Q ss_pred HH---HHHHHHHHHHHHHhcCcc------------cccchhhhHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCchhhHH
Q 001062 576 EV---KECAISCMGLVISTFGDN------------LGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVL 640 (1167)
Q Consensus 576 ~v---r~~Ai~alg~l~~~~g~~------------l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~~~~~~~~~~~ 640 (1167)
.+ ..+++.++|.+.+.+... +...++.+++.|....+.|..|...--.++++.... +.++-|++
T Consensus 658 v~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~l-g~~vlPfi 736 (980)
T KOG2021|consen 658 VVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPIL-GNKVLPFI 736 (980)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhc-chhhhcch
Confidence 22 256778888887766432 223455666666666788888887777778776432 33456777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Q 001062 641 EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELS 690 (1167)
Q Consensus 641 ~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~ 690 (1167)
+.+++.+.. +.+.---..-+..|..+...+. ..+.++++++.
T Consensus 737 pklie~lL~---s~d~kEmvdfl~flsQLihkfk-----~~~~~ilnqml 778 (980)
T KOG2021|consen 737 PKLIELLLS---STDLKEMVDFLGFLSQLIHKFK-----TDCYQILNQML 778 (980)
T ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 777665543 2232222344555555555443 23445555543
No 51
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=2.3e-05 Score=90.35 Aligned_cols=487 Identities=16% Similarity=0.191 Sum_probs=280.2
Q ss_pred HHHHhcCCCCh-hHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHH
Q 001062 50 IVVQQLDDVAG-DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSL 128 (1167)
Q Consensus 50 ~ll~~L~d~~~-~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i 128 (1167)
.|.++|++.+. +.+.+--+.|+.+++ .+.+..+++.....+.+++.+++...-.=|-...++-|...+. =
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~---G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL------S 109 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAK---GKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL------S 109 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee------e
Confidence 35566766544 444444445555553 3347788888888888888887665444444445554442110 0
Q ss_pred HHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHH
Q 001062 129 TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAK 208 (1167)
Q Consensus 129 ~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~ 208 (1167)
+..+-+.|.|+ ++-+|..|+.+|+.+= +.-..+-++-++-++.+++.+-|||.|+.||..+=..-++. -++
T Consensus 110 IntfQk~L~Dp--N~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~-k~q 180 (968)
T KOG1060|consen 110 INTFQKALKDP--NQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ-KDQ 180 (968)
T ss_pred HHHHHhhhcCC--cHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh-HHH
Confidence 23444556555 6889999999998652 11123344455556777888999999999998887655543 346
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcc
Q 001062 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD 288 (1167)
Q Consensus 209 l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~ 288 (1167)
+++.+-..+.+.. .-+...++.+|..+|-.--+-+.+|...+-.++.+. +|--+ .-
T Consensus 181 L~e~I~~LLaD~s--plVvgsAv~AF~evCPerldLIHknyrklC~ll~dv--------deWgQ--vv------------ 236 (968)
T KOG1060|consen 181 LEEVIKKLLADRS--PLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDV--------DEWGQ--VV------------ 236 (968)
T ss_pred HHHHHHHHhcCCC--CcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccch--------hhhhH--HH------------
Confidence 6665555565543 256677788887765433333455555544443321 11100 11
Q ss_pred ccccHHHHHHHHHHhhcc---CCCCCCCCCCCCcccccccccch--hhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChh
Q 001062 289 ISSYCDEILHLTLEYLSY---DPNFTDNMEEDSDDEAYEEEEED--ESANEYTDDEDASWKVRRAAAKCLAALIVSRPEM 363 (1167)
Q Consensus 289 ~~~~l~~ii~~~~~~l~~---dp~~~~~~~~d~~~~~~~~~~d~--~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~ 363 (1167)
+|..+.+|.++ +|+..+.+-++ ...+- -..+. +....|.-|.|
T Consensus 237 -------lI~mL~RYAR~~l~~P~~~~~~~e~-n~~~~-~~~~~~~~~~~P~~~d~D----------------------- 284 (968)
T KOG1060|consen 237 -------LINMLTRYARHQLPDPTVVDSSLED-NGRSC-NLKDKYNEIRTPYVNDPD----------------------- 284 (968)
T ss_pred -------HHHHHHHHHHhcCCCcccccccccc-Ccccc-cccccccccCCCcccCcc-----------------------
Confidence 12233333221 34321110000 00000 00000 00011111111
Q ss_pred hHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhH
Q 001062 364 LSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTK 443 (1167)
Q Consensus 364 l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r 443 (1167)
+..+++..-|. +..++..|..++.+++-.+. | ......|++.+.+.|++. ..++
T Consensus 285 ~~lLL~stkpL----l~S~n~sVVmA~aql~y~lA-----------------P----~~~~~~i~kaLvrLLrs~-~~vq 338 (968)
T KOG1060|consen 285 LKLLLQSTKPL----LQSRNPSVVMAVAQLFYHLA-----------------P----KNQVTKIAKALVRLLRSN-REVQ 338 (968)
T ss_pred HHHHHHhccHH----HhcCCcHHHHHHHhHHHhhC-----------------C----HHHHHHHHHHHHHHHhcC-Ccch
Confidence 11233333332 35778888877777765442 2 124566788888888764 4578
Q ss_pred HHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCC
Q 001062 444 VGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER 523 (1167)
Q Consensus 444 ~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~ 523 (1167)
...++.+..++..-|+-|.||+..++-.- .|+ ..+++-=+..|+.++... .+..|++.+...+++.
T Consensus 339 yvvL~nIa~~s~~~~~lF~P~lKsFfv~s----sDp---~~vk~lKleiLs~La~es-------ni~~ILrE~q~YI~s~ 404 (968)
T KOG1060|consen 339 YVVLQNIATISIKRPTLFEPHLKSFFVRS----SDP---TQVKILKLEILSNLANES-------NISEILRELQTYIKSS 404 (968)
T ss_pred hhhHHHHHHHHhcchhhhhhhhhceEeec----CCH---HHHHHHHHHHHHHHhhhc-------cHHHHHHHHHHHHhcC
Confidence 78888888888888888888887654110 121 223333344567766532 3578889999999888
Q ss_pred chHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhh
Q 001062 524 YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPAC 603 (1167)
Q Consensus 524 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~ 603 (1167)
+.++...|+.++|.+....+. .-+.++..++..+++. +..|-..|...+-.++..-.. ...++
T Consensus 405 d~~faa~aV~AiGrCA~~~~s-----------v~~tCL~gLv~Llssh--de~Vv~eaV~vIk~Llq~~p~----~h~~i 467 (968)
T KOG1060|consen 405 DRSFAAAAVKAIGRCASRIGS-----------VTDTCLNGLVQLLSSH--DELVVAEAVVVIKRLLQKDPA----EHLEI 467 (968)
T ss_pred chhHHHHHHHHHHHHHHhhCc-----------hhhHHHHHHHHHHhcc--cchhHHHHHHHHHHHHhhChH----HHHHH
Confidence 778999999999998776543 4567888888888754 556778888888888754221 22233
Q ss_pred HHHHHHhh---cCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001062 604 LPVLVDRM---GNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVA 672 (1167)
Q Consensus 604 l~~L~~~L---~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~ 672 (1167)
+..|.+.+ .-..-|...++.+|+.+.- ...+.++++..+..-...++..+|...+.....+...
T Consensus 468 i~~La~lldti~vp~ARA~IiWLige~~e~-----vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~ 534 (968)
T KOG1060|consen 468 LFQLARLLDTILVPAARAGIIWLIGEYCEI-----VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLT 534 (968)
T ss_pred HHHHHHHhhhhhhhhhhceeeeeehhhhhh-----cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEe
Confidence 33333333 2223455556666766632 1345677777777767777888898888877776543
No 52
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.1e-06 Score=99.41 Aligned_cols=356 Identities=16% Similarity=0.185 Sum_probs=225.7
Q ss_pred HHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh-
Q 001062 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS- 165 (1167)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~- 165 (1167)
+.+...+.+.+.+.+--+..+++.+.+.-........+..-++|.++..|...+ ++.++.+|-.+|..++......-.
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCC-ChhHHHHHHHHHHHHhcCchhhccc
Confidence 344444445544445555566666654433223445556688999999997543 588999999999988864333211
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 001062 166 NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1167)
Q Consensus 166 ~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~ 241 (1167)
--...-++.+...+.+++..|+..|+-|||.++...+.- .+ ...++.++..+..+.. ....+.+..++..+|+..
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-LSMLRNATWTLSNLCRGK 226 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-hHHHHHHHHHHHHHHcCC
Confidence 111234677889999999999999999999999765442 22 2356677777766542 357788999999999974
Q ss_pred -hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHH-HHHHHHHHhhccCCCCCCCCCCCCc
Q 001062 242 -GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNFTDNMEEDSD 319 (1167)
Q Consensus 242 -~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~-~ii~~~~~~l~~dp~~~~~~~~d~~ 319 (1167)
|.-=-..+..++|.+...+.+ .|+++..-++|++..+...-++.+.-.++ .+++.+..++.+..
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~---~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~----------- 292 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHS---TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS----------- 292 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC-----------
Confidence 321111356788899988888 88999999999999888765544432221 33444444444221
Q ss_pred ccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHH-HHHHHhhHHHhhhc-cCChhHHHHHHHHHHHH
Q 001062 320 DEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSK-LYEEACPKLIDRFK-EREENVKMDVFNTFIEL 397 (1167)
Q Consensus 320 ~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~-~~~~i~p~L~~~l~-d~~~~vr~~~~~~l~~l 397 (1167)
-+|+..|.+++|.++......... +-...+|.|...+. .+.+.+|.+++.+++-+
T Consensus 293 -----------------------~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 293 -----------------------PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred -----------------------cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence 267888999999866654322221 22234566666664 66777999998888776
Q ss_pred HHhhCCCCCCccCCCCCchHHHHHHHH-HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh--hhhHHHHHH
Q 001062 398 VRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGIEK 474 (1167)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~l~~~~-~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~l~~~l~~ 474 (1167)
.. |+ + ..++..+ ..+++.+...|.....++|-.|..+++.++.........|+ ..+++.++.
T Consensus 350 tA--G~------------~-~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcd 414 (514)
T KOG0166|consen 350 TA--GN------------Q-EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCD 414 (514)
T ss_pred hc--CC------------H-HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhh
Confidence 54 11 1 2333332 34667788888877788888888888877654322222232 236777777
Q ss_pred hcccCCCCchHHHHHHHHHHHHhc
Q 001062 475 SLNDKSSTSNLKIEALTFTRLVLS 498 (1167)
Q Consensus 475 ~l~d~~~~~~~~~~al~~l~~l~~ 498 (1167)
.|.-. +.++-..++..+..+++
T Consensus 415 lL~~~--D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 415 LLTCP--DVKIILVALDGLENILK 436 (514)
T ss_pred cccCC--ChHHHHHHHHHHHHHHH
Confidence 77433 33444445556666655
No 53
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.85 E-value=0.0012 Score=82.09 Aligned_cols=646 Identities=14% Similarity=0.162 Sum_probs=318.1
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhc
Q 001062 419 LLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1167)
Q Consensus 419 ~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1167)
.|...+...++.+...+.++...+|.-|+.+++.+++.-|.-+. -+.+-..+..-+.|. +..||.+|+.+++.++-
T Consensus 809 ~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~Ds--sasVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDS--SASVREAALDLVGRFVL 884 (1692)
T ss_pred HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccc--hhHHHHHHHHHHhhhhh
Confidence 34556677888888888888889999999999999886554432 344455566666676 45799999999999886
Q ss_pred cCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHH
Q 001062 499 SHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVK 578 (1167)
Q Consensus 499 ~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr 578 (1167)
++. .+..+.+..+...+.|..-.||-.+++.+.++|... | +|.. ...+..-++.+.+ |....|+
T Consensus 885 ~~~-----e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-p-------df~~-i~~~cakmlrRv~--DEEg~I~ 948 (1692)
T KOG1020|consen 885 SIP-----ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEET-P-------DFSK-IVDMCAKMLRRVN--DEEGNIK 948 (1692)
T ss_pred ccH-----HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-C-------Chhh-HHHHHHHHHHHhc--cchhHHH
Confidence 542 355666777788888988899999999999998752 2 2332 2233333444443 3333466
Q ss_pred HHHHHHHHHHHHhcCcccccchh-hhHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH-HHHH-hh
Q 001062 579 ECAISCMGLVISTFGDNLGAELP-ACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTA-FLRK-AN 655 (1167)
Q Consensus 579 ~~Ai~alg~l~~~~g~~l~~~~~-~~l~~L~~~L~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~-~L~~-~~ 655 (1167)
.-+...+-.+ ||+|--. ...+...+....+... +..+. .. ...|+++++..+.. .+.+ ..
T Consensus 949 kLv~etf~kl------WF~p~~~~~d~~~~~~kI~~~~~v--v~~~~--d~-------~~~~~eqLl~~ilk~~~~~~~~ 1011 (1692)
T KOG1020|consen 949 KLVRETFLKL------WFTPVPEVNDQPAKARKISLEVDV--VMSQV--DL-------MNDWLEQLLDHILKFYLLKTMK 1011 (1692)
T ss_pred HHHHHHHHHH------hccCCCcccccHHHHHhhHHHHHH--HHHHH--HH-------hcChHHHHHHHHHHHHHhhhhh
Confidence 5555544443 3333111 1111111111111100 11111 01 13355555444322 2211 11
Q ss_pred HHHHHHHHHHHH---HHHHHhCCCCChhhHHHHHHHHh--hhcCCCchhhHHHHHHHHHHHhhcccCCCchhhhhhhchH
Q 001062 656 RALRQATLGTMN---SLVVAYGDKIGASAYEVIIVELS--TLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVL 730 (1167)
Q Consensus 656 ~~lr~~al~~L~---~l~~~~~~~~~~~~~~~~l~~l~--~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l 730 (1167)
...+..++.++. .|..++- ++. +.++- ...++.+-......+.+|..+++. .|.... ...+
T Consensus 1012 ~~~~~v~~~~v~~~~~L~~~cl-------~~~-i~ev~~~~~~~~~~~~~~~~~lstL~~Fski---rP~Llt---~khv 1077 (1692)
T KOG1020|consen 1012 ESVKPVALAKVTHVLNLLTHCL-------VEK-ISEVESDDMNEEESEVRLLAYLSTLFVFSKI---RPQLLT---KKHV 1077 (1692)
T ss_pred hhhhHHHHhhcchHHHHHHHHH-------HHH-HHhhhhHhhhcccchhHHHHHHHHHHHHHhc---Cchhcc---HHHH
Confidence 122222222222 1111110 000 01111 011222333345567777888877 555222 1333
Q ss_pred HHHHHHhhhcc--c-hhhhHHHHHHHHHHHHhccCCChHH----HHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHhh
Q 001062 731 PQALALIKSSL--L-QGQALVALQSFFAALVYSANTSFDT----LLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLA 803 (1167)
Q Consensus 731 ~~l~~ll~~~~--l-~~~~l~~~~~~~~~l~~~~~~~~~~----ll~~L~~~~~~~~~~~~~~~~a~~~~a~~i~~~~~~ 803 (1167)
-.+.-.+.+.. . ...-++....+++.+..-.+...+. +-+.|+..+-.. + ......+.-|+|.++..
T Consensus 1078 ~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~----g--~a~V~~~vsCl~sl~~k 1151 (1692)
T KOG1020|consen 1078 ITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKM----G--MATVVEAVSCLGSLATK 1151 (1692)
T ss_pred HHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhc----c--hHHHHHHHHHHHHHHhh
Confidence 33333444432 0 1122344555555544332211112 222233222000 0 11122334577766542
Q ss_pred --cCCcchhHHHHHHHHHh---hcCCCCc-----hHHHHHHHHHHhhhhccCCCCC----c-----------cchHHHHH
Q 001062 804 --AGDQKCSSTVKMLTDIL---KDDSSTN-----SAKQHLALLCLGEIGRRKDLSS----H-----------EHIENVII 858 (1167)
Q Consensus 804 --~~~~~~~~~~~~l~~~l---~~~~~~~-----~~~~~lal~~Lgei~~~~~~~~----~-----------~~~~~~l~ 858 (1167)
.+-..+......|.+.+ +.+-..+ -+.-.=.+.++|-+.|+.+... . +.++..+.
T Consensus 1152 ~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~ 1231 (1692)
T KOG1020|consen 1152 RTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLM 1231 (1692)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHH
Confidence 12112333444454433 2210011 1222334568899999865421 0 12233333
Q ss_pred HhcCCChhhHHHHHHHHHHhhhhcCcccchHH-HHHHh----hc---ccchhHHHHHHHHHHHhhccccchhhhhHHHHH
Q 001062 859 ESFQSPFEEIKSAASYALGNIAVGNLSKFLPF-ILDQI----DN---QQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEK 930 (1167)
Q Consensus 859 ~~l~~~~e~vr~aaa~aLG~l~~~~~~~~lp~-l~~~l----~~---~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~ 930 (1167)
-.....+.++|..|-.+||.++..+++-+... +...+ .+ +...+..++..+-..+...... +
T Consensus 1232 ~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~----l------ 1301 (1692)
T KOG1020|consen 1232 YFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKK----L------ 1301 (1692)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH----H------
Confidence 33456679999999999999999988765432 22222 11 1111334444444443322111 0
Q ss_pred HHHHHHhhccCCccchhhHHHHHhhhccccC------------cccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChh
Q 001062 931 ILNLLFNHCESEEEGVRNVVAECLGKIALIE------------PAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEK 998 (1167)
Q Consensus 931 i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~------------~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~ 998 (1167)
.+.........-++-++.+.-.. -..|++.+.+..-+.+...|.+++..++-++..+..
T Consensus 1302 --------~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLV- 1372 (1692)
T KOG1020|consen 1302 --------RNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLV- 1372 (1692)
T ss_pred --------HhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCC-
Confidence 00001111122222222222100 125778888877677888999999999988776641
Q ss_pred hhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHH---HhhhccccceeeeeccCceeecc
Q 001062 999 IDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLY---DQTIVKKELIRTVDLGPFKHTVD 1075 (1167)
Q Consensus 999 ~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~~l~~llp~L~---~~~~~~~~lir~v~~gp~k~~~d 1075 (1167)
.=..|+|.++.+-.|+...+|..|...|.-+-...+..+...+..=+..-| +.+... . + -..+-|...-.
T Consensus 1373 ---hP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk~~~G~~lsf~lq~~~~~~-~--~-~~~~~fr~~d~ 1445 (1692)
T KOG1020|consen 1373 ---HPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSKLSQGVQLSFKLQQHIDEK-T--Y-KPVRGFRLPDH 1445 (1692)
T ss_pred ---CccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHH-h--h-cccccccCccc
Confidence 112468888877779999999999999988877888877766654332222 111110 0 0 01112221111
Q ss_pred cChhHHHHHHHHHHHHHhhccccCCcccchHHHHhcccCC-c-chhHHHHHHHHHHH------HhhCchHHHHHHHHHHH
Q 001062 1076 DGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-H-YDVKMPCHLILSKL------ADKCPSAVLADFLHLMY 1147 (1167)
Q Consensus 1076 ~gle~Rk~a~~~~~~ll~~~~~~~~~~~~~~~~~~~gl~D-~-~di~~l~~~~l~~l------~~~~p~~~~~~l~~l~~ 1147 (1167)
.+- +.-.-+|++++. .|...+.|+ .-+..+..| + ..+..+-+. --.| ..--|-.+...+|..+.
T Consensus 1446 ss~----tl~s~ly~~~r~--nk~~rr~fl-~si~~lfd~~~ks~vs~~~yi-adnLA~fPyvsqdEPLyl~~tID~~la 1517 (1692)
T KOG1020|consen 1446 SSS----TLKSNLYKSIRG--NKQIRRSFL-QSILDLFDDPNKSVVSFLLYI-ADNLANFPYVSQDEPLYLMHTIDLTLA 1517 (1692)
T ss_pred chh----HHHhccHHHHhh--hHHHHHHHH-HHHHHhccCCCcchhhhHHHH-HhhhccCCcccccchHHHHHHHHHHHH
Confidence 111 111333455554 133345566 666677776 3 333333222 2222 23556667777776666
Q ss_pred HHHHHhcc
Q 001062 1148 TIITFSVG 1155 (1167)
Q Consensus 1148 ~~~~~~~~ 1155 (1167)
.....+-+
T Consensus 1518 ~~g~~ll~ 1525 (1692)
T KOG1020|consen 1518 RLGEVLLD 1525 (1692)
T ss_pred HhhHHHHH
Confidence 55544433
No 54
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.6e-05 Score=91.72 Aligned_cols=431 Identities=15% Similarity=0.188 Sum_probs=247.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHh
Q 001062 224 PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEY 303 (1167)
Q Consensus 224 ~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~ 303 (1167)
...+++.=..++.|++. +. ...++|.+.+-... .+.|+|...+--|-.+++.-|..--- -|....+.
T Consensus 50 ~~KleAmKRIia~iA~G--~d----vS~~Fp~VVKNVas---kn~EVKkLVyvYLlrYAEeqpdLALL----SIntfQk~ 116 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKG--KD----VSLLFPAVVKNVAS---KNIEVKKLVYVYLLRYAEEQPDLALL----SINTFQKA 116 (968)
T ss_pred HHHHHHHHHHHHHHhcC--Cc----HHHHHHHHHHHhhc---cCHHHHHHHHHHHHHHhhcCCCceee----eHHHHHhh
Confidence 34444444455556653 23 34455555555555 67888887665555555443321000 02222333
Q ss_pred hccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCC
Q 001062 304 LSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKERE 383 (1167)
Q Consensus 304 l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~ 383 (1167)
+ +||| .-+|-+|.+++..+=. | . +-.-++-.+-++..|..
T Consensus 117 L-~DpN---------------------------------~LiRasALRvlSsIRv--p-~---IaPI~llAIk~~~~D~s 156 (968)
T KOG1060|consen 117 L-KDPN---------------------------------QLIRASALRVLSSIRV--P-M---IAPIMLLAIKKAVTDPS 156 (968)
T ss_pred h-cCCc---------------------------------HHHHHHHHHHHHhcch--h-h---HHHHHHHHHHHHhcCCc
Confidence 3 3555 3689888888876521 1 1 11122223335568899
Q ss_pred hhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchh--
Q 001062 384 ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCL-- 461 (1167)
Q Consensus 384 ~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l-- 461 (1167)
+-||..+..++..+-..- .++-+.++..+.+.|++.++.|.-++..+|.+++ |+.+
T Consensus 157 ~yVRk~AA~AIpKLYsLd-------------------~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evC---PerldL 214 (968)
T KOG1060|consen 157 PYVRKTAAHAIPKLYSLD-------------------PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVC---PERLDL 214 (968)
T ss_pred HHHHHHHHHhhHHHhcCC-------------------hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhc---hhHHHH
Confidence 999999888876654321 1234588888899999999888877777666654 5543
Q ss_pred -HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC----------------------------CCchhhhhHhh
Q 001062 462 -ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS----------------------------PPVFHPYIKAL 512 (1167)
Q Consensus 462 -~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~----------------------------~~~~~~~l~~l 512 (1167)
-+|+..+. +.|-|- +.+-++-.+..|...++..- |-...+-+..+
T Consensus 215 IHknyrklC----~ll~dv--deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lL 288 (968)
T KOG1060|consen 215 IHKNYRKLC----RLLPDV--DEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLL 288 (968)
T ss_pred hhHHHHHHH----hhccch--hhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHH
Confidence 33444433 333332 12323333333333332110 11112334556
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 001062 513 SSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTF 592 (1167)
Q Consensus 513 l~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~ 592 (1167)
+..+..+++..++.|...+ .++..++.|. . -...+...++..+.. .+++|.-.+.++..+...-
T Consensus 289 L~stkpLl~S~n~sVVmA~----aql~y~lAP~-----~----~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~~ 352 (968)
T KOG1060|consen 289 LQSTKPLLQSRNPSVVMAV----AQLFYHLAPK-----N----QVTKIAKALVRLLRS---NREVQYVVLQNIATISIKR 352 (968)
T ss_pred HHhccHHHhcCCcHHHHHH----HhHHHhhCCH-----H----HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhcc
Confidence 6666666667777665433 3444444441 1 344556666665642 3567777777888877665
Q ss_pred CcccccchhhhHHHHHHhhcCc-hhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001062 593 GDNLGAELPACLPVLVDRMGNE-ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVV 671 (1167)
Q Consensus 593 g~~l~~~~~~~l~~L~~~L~~e-~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~ 671 (1167)
...|.||+...+-.- .+. .++.-=+..|.++++. .-+..+++++..|+.+.++.+-..++.+|+..+.
T Consensus 353 ~~lF~P~lKsFfv~s----sDp~~vk~lKleiLs~La~e-------sni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~ 421 (968)
T KOG1060|consen 353 PTLFEPHLKSFFVRS----SDPTQVKILKLEILSNLANE-------SNISEILRELQTYIKSSDRSFAAAAVKAIGRCAS 421 (968)
T ss_pred hhhhhhhhhceEeec----CCHHHHHHHHHHHHHHHhhh-------ccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 666666654432211 111 2334446677778753 2357899999999999999888999999999888
Q ss_pred HhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHH
Q 001062 672 AYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQ 751 (1167)
Q Consensus 672 ~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~ 751 (1167)
+.+. +-+..++-+..+++..|..+...+...+..+++. .|. ...+++..+..++.+-. -..+-...+
T Consensus 422 ~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~---~p~----~h~~ii~~La~lldti~-vp~ARA~Ii 488 (968)
T KOG1060|consen 422 RIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK---DPA----EHLEILFQLARLLDTIL-VPAARAGII 488 (968)
T ss_pred hhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh---ChH----HHHHHHHHHHHHhhhhh-hhhhhceee
Confidence 7763 4466788888889888988888899999999988 453 23345666666553322 122222233
Q ss_pred HHHHHHHhccCCChHHHHHHHhhc
Q 001062 752 SFFAALVYSANTSFDTLLDSLLSS 775 (1167)
Q Consensus 752 ~~~~~l~~~~~~~~~~ll~~L~~~ 775 (1167)
=+++..++..+...+.++..+...
T Consensus 489 WLige~~e~vpri~PDVLR~laks 512 (968)
T KOG1060|consen 489 WLIGEYCEIVPRIAPDVLRKLAKS 512 (968)
T ss_pred eeehhhhhhcchhchHHHHHHHHh
Confidence 444555544444455555544443
No 55
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00011 Score=85.45 Aligned_cols=420 Identities=15% Similarity=0.180 Sum_probs=246.4
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHH
Q 001062 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI 124 (1167)
Q Consensus 45 ~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~ 124 (1167)
--+...+-+-|+++|.-|...|...+|.+. +++-...+.+..-..+...++-+|.-|.+|+-.++-..|. .
T Consensus 106 lLltNslknDL~s~nq~vVglAL~alg~i~---s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~------l 176 (866)
T KOG1062|consen 106 LLLTNSLKNDLNSSNQYVVGLALCALGNIC---SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD------L 176 (866)
T ss_pred HHHHHHHHhhccCCCeeehHHHHHHhhccC---CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch------H
Confidence 345667778889999999999999999876 3444445555555555667777899999999999887776 4
Q ss_pred HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcC---------------ChHHHHHH
Q 001062 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA---------------NQASVRKK 189 (1167)
Q Consensus 125 ~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~---------------~~~~vrk~ 189 (1167)
+..++|..-+.|.++ +..|-..++.++.++++.....+. ++..+++-+...|++ ++|-++-+
T Consensus 177 ~e~f~~~~~~lL~ek--~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~ 253 (866)
T KOG1062|consen 177 VEHFVIAFRKLLCEK--HHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR 253 (866)
T ss_pred HHHhhHHHHHHHhhc--CCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH
Confidence 566777777777765 578888889999999888655443 333355444443321 13456666
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh--hhhc-chhhhHHHHHHHhhhcCCC
Q 001062 190 SVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY--RFGP-HLGDTVPVLIDYCTSASEN 266 (1167)
Q Consensus 190 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~p-~l~~lvp~l~~~l~~~~e~ 266 (1167)
.++.|+.++..-.+. .+.| ...++.+++.+.. ..+. -|-+.+..++.. . .
T Consensus 254 iLrlLriLGq~d~da--Sd~M--------------------~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~---~ 306 (866)
T KOG1062|consen 254 ILRLLRILGQNDADA--SDLM--------------------NDILAQVATNTDSSKNAGNAILYECVRTIMDI--R---S 306 (866)
T ss_pred HHHHHHHhcCCCccH--HHHH--------------------HHHHHHHHhcccccccchhHHHHHHHHHHHhc--c---C
Confidence 666666666554332 1222 2223333322100 0010 011111122211 1 4
Q ss_pred ChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHH
Q 001062 267 DEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVR 346 (1167)
Q Consensus 267 ~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR 346 (1167)
+..+|..|..+++.|+.+--. .+|
T Consensus 307 ~~~LrvlainiLgkFL~n~d~--------------------------------------------------------Nir 330 (866)
T KOG1062|consen 307 NSGLRVLAINILGKFLLNRDN--------------------------------------------------------NIR 330 (866)
T ss_pred CchHHHHHHHHHHHHhcCCcc--------------------------------------------------------cee
Confidence 578999998888877654211 234
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHH
Q 001062 347 RAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSK 426 (1167)
Q Consensus 347 ~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~ 426 (1167)
-.|...|..++...|.....+- ..++++++|.+..+|..+++....+++. +.+..
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn~---------------------~Nv~~ 385 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVNE---------------------SNVRV 385 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhcc---------------------ccHHH
Confidence 4455555555555554333333 3456778999999999999998888764 34466
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchh
Q 001062 427 IVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFH 506 (1167)
Q Consensus 427 l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~ 506 (1167)
+++.+...|...++..|..+..-+..+++.+.+.=.=|++.++..+.. . ...++.++..-+-.++.+.. ...+
T Consensus 386 mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~----a--G~~V~~dv~~nll~LIa~~~-~e~~ 458 (866)
T KOG1062|consen 386 MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKT----A--GDFVNDDVVNNLLRLIANAF-QELH 458 (866)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh----c--ccccchhhHHHHHHHHhcCC-cchh
Confidence 777777777777778888888888888877644333355555544432 2 34677777765555554321 2222
Q ss_pred h-hhHhhHHHHHHH----hcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHH
Q 001062 507 P-YIKALSSPVLAA----VGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECA 581 (1167)
Q Consensus 507 ~-~l~~ll~~l~~~----l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~A 581 (1167)
. .+..++..+... +.. .....-+.+|+|+....+-.... ...-...--..+...+.+.+.....+..+|.-|
T Consensus 459 ~y~~~rLy~a~~~~~~~~is~--e~l~qVa~W~IGEYGdlll~~~~-~~~p~~vtesdivd~l~~v~~~~~s~~~tk~ya 535 (866)
T KOG1062|consen 459 EYAVLRLYLALSEDTLLDISQ--EPLLQVASWCIGEYGDLLLDGAN-EEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYA 535 (866)
T ss_pred hHHHHHHHHHHhhhhhhhhhh--hhHHHHHHHHhhhhhHHhhcCcc-ccCCCcCCHHHHHHHHHHHHHhccchHHHHHHH
Confidence 2 223444444332 222 23455677777776533221100 000011112345555555555555677889999
Q ss_pred HHHHHHHHHhcCc
Q 001062 582 ISCMGLVISTFGD 594 (1167)
Q Consensus 582 i~alg~l~~~~g~ 594 (1167)
+.|+-.+-..++.
T Consensus 536 l~Al~KLSsr~~s 548 (866)
T KOG1062|consen 536 LTALLKLSSRFHS 548 (866)
T ss_pred HHHHHHHHhhccc
Confidence 8888887766544
No 56
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.67 E-value=8.9e-07 Score=94.59 Aligned_cols=183 Identities=14% Similarity=0.239 Sum_probs=130.5
Q ss_pred CcchHHHHHHHHHHHHHHhcC-----ChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCC
Q 001062 340 DASWKVRRAAAKCLAALIVSR-----PEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNEL 414 (1167)
Q Consensus 340 d~sw~vR~aA~~~l~~li~~~-----~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~ 414 (1167)
+..|+.|..|..-+..++... ++.+...+..+++.+...++|..-.|...++.++..+....+.
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~----------- 86 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS----------- 86 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG-----------
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH-----------
Confidence 456999999999999998876 2333344555556777777777777888899999999988762
Q ss_pred chHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhh-HHHHHHhcccCCCCchHHHHHHHHH
Q 001062 415 NPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSL-IPGIEKSLNDKSSTSNLKIEALTFT 493 (1167)
Q Consensus 415 ~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l-~~~l~~~l~d~~~~~~~~~~al~~l 493 (1167)
.+.++++.+++.+.+.+.+++.-++..+..++..++...+ +.+.+ .+.+...++++ ++.+|..++.++
T Consensus 87 ----~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l 155 (228)
T PF12348_consen 87 ----HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSK--NPQVREECAEWL 155 (228)
T ss_dssp ----GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S---HHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Confidence 4677889999999999999888899999999999998665 13444 67777788877 578999999999
Q ss_pred HHHhccCC--CCchhh--hhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 001062 494 RLVLSSHS--PPVFHP--YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1167)
Q Consensus 494 ~~l~~~~~--~~~~~~--~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1167)
..++..++ ...+.. .++.+.+.+.++++|.++.||..|-.++..+.+..+.
T Consensus 156 ~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 156 AIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 99998876 344444 4588999999999999999999999999999877543
No 57
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.64 E-value=0.0019 Score=72.23 Aligned_cols=472 Identities=15% Similarity=0.160 Sum_probs=250.7
Q ss_pred ccchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001062 161 GNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL--AKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1167)
Q Consensus 161 g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l 237 (1167)
|+.+. .....+.=.+++.+++.++.+|.....++..++....+-+. ..+|..+ ..... +..|-.|+..+-.+
T Consensus 55 ge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm~tssiMkD~----~~g~~-~~~kp~AiRsL~~V 129 (898)
T COG5240 55 GELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKDL----NGGVP-DDVKPMAIRSLFSV 129 (898)
T ss_pred cccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhHHHHHHHHhh----ccCCc-cccccHHHHHHHHh
Confidence 44442 44556666777888899999999999999998877666432 2333322 22211 23455555554444
Q ss_pred HHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCC
Q 001062 238 SRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEED 317 (1167)
Q Consensus 238 ~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d 317 (1167)
.. ..-.+-+.. ++-+.+.+ .....|.+|+-+---+....-...+.|.++.-++++.. +.-||+....+-.
T Consensus 130 id---~~tv~~~er---~l~~a~Vs---~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l-~q~p~~~~n~gy~ 199 (898)
T COG5240 130 ID---GETVYDFER---YLNQAFVS---TSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDL-KQFPNQHGNEGYE 199 (898)
T ss_pred cC---cchhhhHHH---Hhhhhccc---cchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhH-hhCcCccCCcccC
Confidence 33 211211111 22233333 45556666654333332222223556777777777663 3456653211100
Q ss_pred CcccccccccchhhcCCCCCCCCcchHHHH----HHHHHHHHHHhcCC---------------hhh---HHHHHHHhhHH
Q 001062 318 SDDEAYEEEEEDESANEYTDDEDASWKVRR----AAAKCLAALIVSRP---------------EML---SKLYEEACPKL 375 (1167)
Q Consensus 318 ~~~~~~~~~~d~~~~~~~~dddd~sw~vR~----aA~~~l~~li~~~~---------------~~l---~~~~~~i~p~L 375 (1167)
--.. --++ |.- -.--+..|| +-.+.+..+..... +.+ .+++.+.-|.|
T Consensus 200 Pn~~---~isq------YHa-lGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL 269 (898)
T COG5240 200 PNGN---PISQ------YHA-LGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFL 269 (898)
T ss_pred CCCC---hHHH------HHH-HHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHH
Confidence 0000 0000 000 000123333 22222222222110 111 13455555666
Q ss_pred HhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH
Q 001062 376 IDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVV 455 (1167)
Q Consensus 376 ~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~ 455 (1167)
-.-+++.-+.|..++.+.+..+...-- + .+.+...+..+...|++.....|-+|+++|..|+-
T Consensus 270 ~~wls~k~emV~lE~Ar~v~~~~~~nv------------~-----~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 270 NSWLSDKFEMVFLEAARAVCALSEENV------------G-----SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHhcCcchhhhHHHHHHHHHHHHhcc------------C-----HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 566678888888888877766543210 0 34566777888888888888889999999999998
Q ss_pred hcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHH
Q 001062 456 VLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVC 535 (1167)
Q Consensus 456 ~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l 535 (1167)
..|.... ..-+.+...++|.+ |.-+..+++.++++...+.+.. +-..+|..++-+.|.+-.+...|++.+
T Consensus 333 ~~P~kv~----vcN~evEsLIsd~N-----r~IstyAITtLLKTGt~e~idr-Lv~~I~sfvhD~SD~FKiI~ida~rsL 402 (898)
T COG5240 333 KYPQKVS----VCNKEVESLISDEN-----RTISTYAITTLLKTGTEETIDR-LVNLIPSFVHDMSDGFKIIAIDALRSL 402 (898)
T ss_pred hCCceee----ecChhHHHHhhccc-----ccchHHHHHHHHHcCchhhHHH-HHHHHHHHHHhhccCceEEeHHHHHHH
Confidence 8776532 22234444555542 2223446777787644443322 223334444445566666666777666
Q ss_pred HHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCch
Q 001062 536 GELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEI 615 (1167)
Q Consensus 536 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~ 615 (1167)
...+.. --..++..+...+.+ ....+-+..++.++..+++.. .+.-+.++..|+..+.+-.
T Consensus 403 sl~Fp~--------------k~~s~l~FL~~~L~~-eGg~eFK~~~Vdaisd~~~~~----p~skEraLe~LC~fIEDce 463 (898)
T COG5240 403 SLLFPS--------------KKLSYLDFLGSSLLQ-EGGLEFKKYMVDAISDAMEND----PDSKERALEVLCTFIEDCE 463 (898)
T ss_pred HhhCcH--------------HHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHhhC----chHHHHHHHHHHHHHhhcc
Confidence 554311 112233333333332 334566666666666666432 1234556666666665544
Q ss_pred hhHHHHHHHHHHhc-CCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcC
Q 001062 616 TRLTAVKAFAVIAA-SPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLIS 694 (1167)
Q Consensus 616 ~r~~a~~al~~i~~-~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~ 694 (1167)
-.+.+++.++-+.. .+....-..|+.++...+ --+|..+|.+|+.||...+.+....+.+ +.+...+.+-++
T Consensus 464 y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~----iLEN~ivRsaAv~aLskf~ln~~d~~~~---~sv~~~lkRcln 536 (898)
T COG5240 464 YHQITVRILGILGREGPRAKTPGKYVRHIYNRL----ILENNIVRSAAVQALSKFALNISDVVSP---QSVENALKRCLN 536 (898)
T ss_pred hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHH----HHhhhHHHHHHHHHHHHhccCccccccH---HHHHHHHHHHhh
Confidence 44556666666652 111122255666655433 3478889999999999988776554444 334555566678
Q ss_pred CCchhhHHHHHHHHHH
Q 001062 695 DSDLHMTALALELCCT 710 (1167)
Q Consensus 695 ~~d~~~~~~al~~l~~ 710 (1167)
+.|..+|.-|--.+..
T Consensus 537 D~DdeVRdrAsf~l~~ 552 (898)
T COG5240 537 DQDDEVRDRASFLLRN 552 (898)
T ss_pred cccHHHHHHHHHHHHh
Confidence 8888887766544444
No 58
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.64 E-value=8.6e-07 Score=94.68 Aligned_cols=187 Identities=17% Similarity=0.210 Sum_probs=128.5
Q ss_pred cCCCcchhcHHHHHHHHHHhhc-CCc--hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHH
Q 001062 94 LNGKDQHRDIASIALKTIIAEV-TTS--SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHER 170 (1167)
Q Consensus 94 ~~~~~~~r~~a~~aL~~~~~~~-~~~--~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~ 170 (1167)
.+.+++.|.-+..-|+.++.+- +.. +.....++.+++.+...+.+. ...+...++.++..++...|..+.++.+.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 4556667777777777777655 111 122233444456666666553 35688999999999999999999999999
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh---hhhh
Q 001062 171 LLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA-TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG---YRFG 246 (1167)
Q Consensus 171 l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l-~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~ 246 (1167)
+++.+++.+.++...+|..|..|+..+..+.+ ....+ ++.+..+..+.+ ...|..++..+..+....| ..+.
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn--~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKN--PQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHccchHhhhc
Confidence 99999999999988999999999999999988 11233 445555555554 4789999999999998877 4555
Q ss_pred c--chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccc
Q 001062 247 P--HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDI 289 (1167)
Q Consensus 247 p--~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~ 289 (1167)
+ .++.+++.+..++.+ .++++|++|-.++..+...+|+.-
T Consensus 171 ~~~~~~~l~~~l~~~l~D---~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSD---ADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp -HHHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred ccchHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCHhh
Confidence 5 358899999999988 899999999999999988877543
No 59
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.0002 Score=82.13 Aligned_cols=233 Identities=18% Similarity=0.276 Sum_probs=156.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccC
Q 001062 638 CVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRS 717 (1167)
Q Consensus 638 ~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~ 717 (1167)
....++-+.+..+|..+-+.+|..|+..+..++..++. .+.+-.+-+..-+.++|+.+..+|..+++.+.+.
T Consensus 140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArK--- 211 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARK--- 211 (877)
T ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhh---
Confidence 34567777888888889999999999999999998875 4555666677778999999999999999999998
Q ss_pred CCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccCCChHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHH
Q 001062 718 SPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCV 797 (1167)
Q Consensus 718 ~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~ll~~L~~~~~~~~~~~~~~~~a~~~~a~~i 797 (1167)
.|+. .-++-|.++.++-+.. ..=.+=-++.+|++++.--|.-...+++.|++.+ .+ ..|.+-+=.||
T Consensus 212 nPkn----yL~LAP~ffkllttSs-NNWmLIKiiKLF~aLtplEPRLgKKLieplt~li-~s-------T~AmSLlYECv 278 (877)
T KOG1059|consen 212 NPQN----YLQLAPLFYKLLVTSS-NNWVLIKLLKLFAALTPLEPRLGKKLIEPITELM-ES-------TVAMSLLYECV 278 (877)
T ss_pred CCcc----cccccHHHHHHHhccC-CCeehHHHHHHHhhccccCchhhhhhhhHHHHHH-Hh-------hHHHHHHHHHH
Confidence 5552 2245566666664432 2222334678888887655555556777777665 22 23344445666
Q ss_pred HHHHhh---cC-Cc---chhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCCCccchHHHHHHhcCCChhhHHH
Q 001062 798 AVLCLA---AG-DQ---KCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKS 870 (1167)
Q Consensus 798 ~~~~~~---~~-~~---~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~l~~~l~~~~e~vr~ 870 (1167)
-.+... .| ++ .+.--+..+-..+.+ .++..+|+.|++++.|+..... .+..-.+.+++++++.++.+|.
T Consensus 279 NTVVa~s~s~g~~d~~asiqLCvqKLr~fied---sDqNLKYlgLlam~KI~ktHp~-~Vqa~kdlIlrcL~DkD~SIRl 354 (877)
T KOG1059|consen 279 NTVVAVSMSSGMSDHSASIQLCVQKLRIFIED---SDQNLKYLGLLAMSKILKTHPK-AVQAHKDLILRCLDDKDESIRL 354 (877)
T ss_pred HHheeehhccCCCCcHHHHHHHHHHHhhhhhc---CCccHHHHHHHHHHHHhhhCHH-HHHHhHHHHHHHhccCCchhHH
Confidence 655332 11 11 123344555545544 4778899999999999876422 2234578899999999999998
Q ss_pred HHHHHH-HhhhhcCcccchHHHHHHh
Q 001062 871 AASYAL-GNIAVGNLSKFLPFILDQI 895 (1167)
Q Consensus 871 aaa~aL-G~l~~~~~~~~lp~l~~~l 895 (1167)
-|-.-| |-+...|+..++-.++..+
T Consensus 355 rALdLl~gmVskkNl~eIVk~LM~~~ 380 (877)
T KOG1059|consen 355 RALDLLYGMVSKKNLMEIVKTLMKHV 380 (877)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 877554 4444455555555555444
No 60
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.62 E-value=7.5e-06 Score=95.28 Aligned_cols=253 Identities=17% Similarity=0.206 Sum_probs=178.6
Q ss_pred CChHHHHHHHHHHHHhcC----------CCC--hhHHHHHH----HHHHHhhhhcChhhHHHHHHHHHHHhcCC-Ccchh
Q 001062 39 ADADLEVKLSNIVVQQLD----------DVA--GDVSGLAV----KCLAPLVKKVSEPRVVEMTDKLCIKLLNG-KDQHR 101 (1167)
Q Consensus 39 ~~~~~~~~i~~~ll~~L~----------d~~--~~Vr~~A~----~~l~~l~~~~~~~~~~~l~~~L~~~~~~~-~~~~r 101 (1167)
++.+...+++..+....- +.+ .+.++..+ .+++.+-+.+.-.....++..+.....+. ++..|
T Consensus 128 l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 207 (415)
T PF12460_consen 128 LSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSR 207 (415)
T ss_pred CCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHH
Confidence 566677777777776654 111 11233222 33333334343234567888888876654 34567
Q ss_pred cHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcC
Q 001062 102 DIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA 181 (1167)
Q Consensus 102 ~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~ 181 (1167)
..++..+..++..++..+....+++.+...+ . .......+..+++++.-+.+-.----.+....++..++..+.+
T Consensus 208 ~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~----~-~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~ 282 (415)
T PF12460_consen 208 LAALQLLASLVNKWPDDDDLDEFLDSLLQSI----S-SSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS 282 (415)
T ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHhhh----c-ccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC
Confidence 7888888888888766433333444443333 1 1124566788888877666543222235667778888888866
Q ss_pred ChHHHHHHHHHHHHHHHhhcC----------------HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhh-
Q 001062 182 NQASVRKKSVSCIASLASSLS----------------DDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR- 244 (1167)
Q Consensus 182 ~~~~vrk~a~~~l~~l~~~~~----------------~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~- 244 (1167)
+.+...+..+++.+..-.+ ..+|..++|.+++..+..+. +.+..++.++..+.+..|..
T Consensus 283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~--~~k~~yL~ALs~ll~~vP~~v 358 (415)
T PF12460_consen 283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD--EIKSNYLTALSHLLKNVPKSV 358 (415)
T ss_pred --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh--hhHHHHHHHHHHHHhhCCHHH
Confidence 5788899999998876421 22488899999999887653 57889999999999999974
Q ss_pred hhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHh
Q 001062 245 FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEY 303 (1167)
Q Consensus 245 ~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~ 303 (1167)
+.++++.++|.+++.+.. +|.+++.++++++..++...|+-+.+|+..+++.+++.
T Consensus 359 l~~~l~~LlPLLlqsL~~---~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 359 LLPELPTLLPLLLQSLSL---PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 688999999999999988 78889999999999999999988999999999988763
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.0021 Score=75.34 Aligned_cols=415 Identities=16% Similarity=0.171 Sum_probs=206.3
Q ss_pred HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH
Q 001062 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1167)
Q Consensus 125 ~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1167)
.-.+...+-+-|++. +.-+.--|+-+|+.++ ++. -.+.+.+-+-..++++++.|||+|+.|.-.+..-.++
T Consensus 105 llLltNslknDL~s~--nq~vVglAL~alg~i~---s~E---mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~- 175 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSS--NQYVVGLALCALGNIC---SPE---MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD- 175 (866)
T ss_pred HHHHHHHHHhhccCC--CeeehHHHHHHhhccC---CHH---HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch-
Confidence 334445555555554 3455666666666554 332 3345555566667788899999999999999887766
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhc------CC------CChhHHH
Q 001062 205 LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA------SE------NDEELRE 272 (1167)
Q Consensus 205 ~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~------~e------~~~e~re 272 (1167)
+.+.+++..-+.+.+.+. -+-.+.+..+..+|+..++.+. |+..++|-++..+.+- .| .|+=+.-
T Consensus 176 l~e~f~~~~~~lL~ek~h--GVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi 252 (866)
T KOG1062|consen 176 LVEHFVIAFRKLLCEKHH--GVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI 252 (866)
T ss_pred HHHHhhHHHHHHHhhcCC--ceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHH
Confidence 445566666666766543 3556778888888887665433 4445666666555431 00 1222222
Q ss_pred HHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHH
Q 001062 273 YSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKC 352 (1167)
Q Consensus 273 ~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~ 352 (1167)
-.++.|..+=..-+ +....+..++.-+..-...+-|... + .-++= --..++= +..-.+|..|+.+
T Consensus 253 ~iLrlLriLGq~d~-daSd~M~DiLaqvatntdsskN~Gn-------A---ILYE~--V~TI~~I--~~~~~Lrvlaini 317 (866)
T KOG1062|consen 253 RILRLLRILGQNDA-DASDLMNDILAQVATNTDSSKNAGN-------A---ILYEC--VRTIMDI--RSNSGLRVLAINI 317 (866)
T ss_pred HHHHHHHHhcCCCc-cHHHHHHHHHHHHHhcccccccchh-------H---HHHHH--HHHHHhc--cCCchHHHHHHHH
Confidence 22332222211111 1111111221111110000001000 0 00000 0000000 0011567777777
Q ss_pred HHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHH
Q 001062 353 LAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSIN 432 (1167)
Q Consensus 353 l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~ 432 (1167)
|+.++. .+..++|.-++.++..++.+-. ...+++-.+ +.
T Consensus 318 LgkFL~----------------------n~d~NirYvaLn~L~r~V~~d~---------------~avqrHr~t----Il 356 (866)
T KOG1062|consen 318 LGKFLL----------------------NRDNNIRYVALNMLLRVVQQDP---------------TAVQRHRST----IL 356 (866)
T ss_pred HHHHhc----------------------CCccceeeeehhhHHhhhcCCc---------------HHHHHHHHH----HH
Confidence 665544 3445566555566655554421 233444444 46
Q ss_pred HHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhh
Q 001062 433 RQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKAL 512 (1167)
Q Consensus 433 ~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~l 512 (1167)
.+|++++...|..++.+...++.. ..+..++..++..|... +.+.+.+...-+..+++...|+. .=|++.+
T Consensus 357 eCL~DpD~SIkrralELs~~lvn~------~Nv~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfaP~k-~W~idtm 427 (866)
T KOG1062|consen 357 ECLKDPDVSIKRRALELSYALVNE------SNVRVMVKELLEFLESS--DEDFKADIASKIAELAEKFAPDK-RWHIDTM 427 (866)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcCCcc-hhHHHHH
Confidence 788899999999999988888752 23566666666666544 45778877777778887666532 1255555
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCcc-chHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHH
Q 001062 513 SSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKP-YVQPIYNAIMSRLTNQDQ-DQEVKECAISCMGLVIS 590 (1167)
Q Consensus 513 l~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~-~l~~l~~~ll~~l~~~d~-~~~vr~~Ai~alg~l~~ 590 (1167)
+..+..+=.=-..++...-+..+++ ..+ +... ...++|..+...- ..+. .+.+-+-|+||+|+.-.
T Consensus 428 l~Vl~~aG~~V~~dv~~nll~LIa~---~~~--------e~~~y~~~rLy~a~~~~~-~~~is~e~l~qVa~W~IGEYGd 495 (866)
T KOG1062|consen 428 LKVLKTAGDFVNDDVVNNLLRLIAN---AFQ--------ELHEYAVLRLYLALSEDT-LLDISQEPLLQVASWCIGEYGD 495 (866)
T ss_pred HHHHHhcccccchhhHHHHHHHHhc---CCc--------chhhHHHHHHHHHHhhhh-hhhhhhhhHHHHHHHHhhhhhH
Confidence 5544433211112222222222111 111 1122 2445555544321 0112 23456789999998642
Q ss_pred hc--C--c--ccccchhhhHHHHHHhhc----CchhhHHHHHHHHHHh
Q 001062 591 TF--G--D--NLGAELPACLPVLVDRMG----NEITRLTAVKAFAVIA 628 (1167)
Q Consensus 591 ~~--g--~--~l~~~~~~~l~~L~~~L~----~e~~r~~a~~al~~i~ 628 (1167)
-+ | + .....-..+...+.+.+. ...++.-|+.|+-.+.
T Consensus 496 lll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 496 LLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS 543 (866)
T ss_pred HhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 21 1 1 111122344444444332 2345666666666665
No 62
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.5e-05 Score=89.59 Aligned_cols=429 Identities=17% Similarity=0.186 Sum_probs=237.1
Q ss_pred HHHHHHHHHhcCC-ChhHHhHhHHHHHHHhcccc-cCCChHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHhhhhcChh
Q 001062 4 LQMAAILEKITGK-DKDFRYMATSDLLNELNKES-FKADADLEVKLSNIVVQQLDDV-AGDVSGLAVKCLAPLVKKVSEP 80 (1167)
Q Consensus 4 ~~i~~ll~~~~~~-d~d~R~mAl~dL~~~l~~~~-~~~~~~~~~~i~~~ll~~L~d~-~~~Vr~~A~~~l~~l~~~~~~~ 80 (1167)
.-+..|++.+++. |+-...-|+-.||..|...+ ..++-=..+.+++.|+..|++. |.++++.|++||..|..-++..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3567899999887 88888889999999887632 2223335688999999999976 7799999999999999877653
Q ss_pred h--HH--HHHHHHHHHhcC-CCcchhcHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHHHhhhccCCChhHHHHHHHHH
Q 001062 81 R--VV--EMTDKLCIKLLN-GKDQHRDIASIALKTIIAEVTTSSLA--QSIHTSLTPQLTKGITLKDMNTEIRCECLDIL 153 (1167)
Q Consensus 81 ~--~~--~l~~~L~~~~~~-~~~~~r~~a~~aL~~~~~~~~~~~~~--~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L 153 (1167)
. +. ..++.|++.+.. ..-++-+-+..||+.+-..-+.. +. ..++ .++ ..+..+ +-.++..|+-+.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A-iL~AG~l~-a~L-sylDFF-----Si~aQR~Alaia 318 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA-ILQAGALS-AVL-SYLDFF-----SIHAQRVALAIA 318 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH-HHhcccHH-HHH-HHHHHH-----HHHHHHHHHHHH
Confidence 2 11 235555544432 22233444566666554443331 11 0111 111 112222 235677788888
Q ss_pred HHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH--HHHHH-----HHHHHHHHhhcC--CCCh
Q 001062 154 CDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD--DLLAK-----ATIEVVRNLRSK--GAKP 224 (1167)
Q Consensus 154 ~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~--~~~~~-----l~~~l~~~l~~~--~~~~ 224 (1167)
...++.....=..+.-+-+|.|.+.|+..+.+.-..++.|+..++..... +.|++ ++..+.+.+.-. ....
T Consensus 319 aN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~ 398 (1051)
T KOG0168|consen 319 ANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSN 398 (1051)
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccc
Confidence 87777766543356777889999999888888888889999988865422 23443 344444444221 1112
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc-chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcc------------ccc
Q 001062 225 EMIRTNIQMVGALSRAVGYRFGP-HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD------------ISS 291 (1167)
Q Consensus 225 ~~r~~~~~~l~~l~~~~~~~~~p-~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~------------~~~ 291 (1167)
...-..+.++..++..+|.-|.. +...|...+...+...+.. +-....-.+.++|.+ +.+
T Consensus 399 ~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s-------~nas~~~~l~r~Pnel~e~~sl~~eLlp~~ 471 (1051)
T KOG0168|consen 399 GTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKS-------ANASLHELLSRSPNELYELTSLIIELLPCL 471 (1051)
T ss_pred cchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcC-------cccccccccccCcHHHHHHHHHHheeecCC
Confidence 34445567777777777765554 2344555544444331100 000011111222211 112
Q ss_pred cHHHHHHHHHHhhccCCCCCCCCCC--CCcccc-----cccc--cchhhcCCCCCCCCcchHH-HHHHHHHHHHHHhcCC
Q 001062 292 YCDEILHLTLEYLSYDPNFTDNMEE--DSDDEA-----YEEE--EEDESANEYTDDEDASWKV-RRAAAKCLAALIVSRP 361 (1167)
Q Consensus 292 ~l~~ii~~~~~~l~~dp~~~~~~~~--d~~~~~-----~~~~--~d~~~~~~~~dddd~sw~v-R~aA~~~l~~li~~~~ 361 (1167)
+++.|+.+-..++.-.-|.++.--. -||-.. ..+- .+. . -+|-.++-++ |+-...+=..++...|
T Consensus 472 p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q----~-~~~~~t~~~~~dkl~~~~r~~~l~nqp 546 (1051)
T KOG0168|consen 472 PVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQ----I-NEDTGTSRKQQDKLNGSAREGLLKNQP 546 (1051)
T ss_pred cccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhh----h-ccCcccchhhhhhcCCchhhhhhhcCH
Confidence 2332222211111100010000000 000000 0000 000 0 0000111111 1111122235677889
Q ss_pred hhhHHHHHHHhhHHHhhh-ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HHHHHHHHHHhccC
Q 001062 362 EMLSKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINRQLREK 438 (1167)
Q Consensus 362 ~~l~~~~~~i~p~L~~~l-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~l~~~l~~~L~~~ 438 (1167)
+.+..+.+.++|+|++-. ..-+..||..++.++..++-.... ..+.+.+ ..+-..+...|..+
T Consensus 547 el~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~s--------------eli~slLk~~~vSS~lAG~lssk 612 (1051)
T KOG0168|consen 547 ELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNS--------------ELIGSLLKNTNVSSHLAGMLSSK 612 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCH--------------HHHHHHHhcchHHHHHHhhhhcC
Confidence 999999999999999887 456789998888877666543220 2333322 12334566667777
Q ss_pred ChhhHHHHHHHHHHHHHhcCchhHhhhh
Q 001062 439 SIKTKVGAFSVLRELVVVLPDCLADHIG 466 (1167)
Q Consensus 439 ~~~~r~~~~~~l~~l~~~~~~~l~~~l~ 466 (1167)
+.++-..++++..-|++.+|+.|.+++.
T Consensus 613 D~~vlVgALQvAEiLmeKlpd~F~~~F~ 640 (1051)
T KOG0168|consen 613 DLTVLVGALQVAEILMEKLPDTFSPSFR 640 (1051)
T ss_pred CCeeEeehHHHHHHHHHHhHHHhhhhHh
Confidence 8888889999999999999998877654
No 63
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=0.0042 Score=71.94 Aligned_cols=149 Identities=14% Similarity=0.217 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHHHhccchh----HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHhh
Q 001062 144 EIRCECLDILCDVLHKFGNLMS----NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LLAKATIEVVRNLR 218 (1167)
Q Consensus 144 ~v~~~~~~~L~~l~~~~g~~l~----~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~ 218 (1167)
.-.++|+-+++.+.. +-...+ -...-+++.+++.++++..-+|.||+..++.+..-.++. +..+..+.....++
T Consensus 431 rq~egalr~lasi~s-~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~ 509 (970)
T COG5656 431 RQAEGALRLLASIKS-FITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLK 509 (970)
T ss_pred HHHhhHHHHHHHHHH-HhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 345677777776665 212111 223346788889998888899999999999997666665 45556666666676
Q ss_pred cCCCChHHHHHHHHHHHHHHHH--hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHH
Q 001062 219 SKGAKPEMIRTNIQMVGALSRA--VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEI 296 (1167)
Q Consensus 219 ~~~~~~~~r~~~~~~l~~l~~~--~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~i 296 (1167)
+.+- .++..+..++..+... ...+|+.|+|..|.-++..-+. -+-+. --.+++.++++++++++||-+++
T Consensus 510 nn~l--pv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~---feiD~---LS~vMe~fVe~fseELspfa~eL 581 (970)
T COG5656 510 NNHL--PVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT---FEIDP---LSMVMESFVEYFSEELSPFAPEL 581 (970)
T ss_pred cCCc--chhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc---ccchH---HHHHHHHHHHHhHHhhchhHHHH
Confidence 6433 5666666677666664 4457899999999998876544 22222 34567889999999999999988
Q ss_pred HHHHH
Q 001062 297 LHLTL 301 (1167)
Q Consensus 297 i~~~~ 301 (1167)
..-+.
T Consensus 582 a~~Lv 586 (970)
T COG5656 582 AGSLV 586 (970)
T ss_pred HHHHH
Confidence 77543
No 64
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.40 E-value=6.3e-05 Score=90.88 Aligned_cols=301 Identities=14% Similarity=0.150 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC
Q 001062 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1167)
Q Consensus 206 ~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~ 285 (1167)
|-.++...+..++.. +.+..++.++..++....+.. -++.++|+++.++.+ .+.+||-.|+.++..++...
T Consensus 423 ~vs~lts~IR~lk~~----~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~D---s~a~Vra~Al~Tlt~~L~~V 493 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTI----QTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMD---SEADVRATALETLTELLALV 493 (1431)
T ss_pred eHHHHHHHHHhhhcc----hhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcC---chHHHHHHHHHHHHHHHhhc
Confidence 344555555555543 457788888888888654432 378999999999988 78899999999988776543
Q ss_pred C----ccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCC
Q 001062 286 P----RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP 361 (1167)
Q Consensus 286 ~----~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~ 361 (1167)
. .+..=|.+-+++.+..+.. | .+.-.||-+-|.+|+.++.+.-
T Consensus 494 r~~~~~daniF~eYlfP~L~~l~~-d--------------------------------~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 494 RDIPPSDANIFPEYLFPHLNHLLN-D--------------------------------SSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred cCCCcccchhhHhhhhhhhHhhhc-c--------------------------------CccceehhhHHhhHHHHHHHHH
Confidence 2 2222344455555544432 0 0122789999999998877543
Q ss_pred hhhHHHHHHHhhHHHhh--hccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 001062 362 EMLSKLYEEACPKLIDR--FKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKS 439 (1167)
Q Consensus 362 ~~l~~~~~~i~p~L~~~--l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~ 439 (1167)
.. ++.. -.+-.. +++.+.+. .+ .... ...+++....+-+.+..++.++.
T Consensus 541 rF----le~~-q~~~~~g~~n~~nset---------------~~--------~~~~-~~~~~~L~~~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 541 RF----LELT-QELRQAGMLNDPNSET---------------AP--------EQNY-NTELQALHHTVEQMVSSLLSDSP 591 (1431)
T ss_pred HH----HHHH-HHHHhcccccCccccc---------------cc--------cccc-chHHHHHHHHHHHHHHHHHcCCc
Confidence 21 1111 011111 12222110 00 0000 02445555666667777788888
Q ss_pred hhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHH
Q 001062 440 IKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAA 519 (1167)
Q Consensus 440 ~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~ 519 (1167)
+-||++.++-+..|+.-++.. ..-+.|++.+...|+|+ ++.+|..-+.-+..+.-..+.... -+-++|.+..+
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDk--Dw~LR~aFfdsI~gvsi~VG~rs~---seyllPLl~Q~ 664 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDK--DWRLRGAFFDSIVGVSIFVGWRSV---SEYLLPLLQQG 664 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCc--cHHHHHHHHhhccceEEEEeeeeH---HHHHHHHHHHh
Confidence 889999999888888766553 23566788999999998 567775533333322222333222 25679999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 001062 520 VGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD 594 (1167)
Q Consensus 520 l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~ 594 (1167)
+.|...-|...|++++..|++. +-. =++++.++++.++..+- .++.=+|..++..+......++.
T Consensus 665 ltD~EE~Viv~aL~~ls~Lik~-~ll-------~K~~v~~i~~~v~PlL~--hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 665 LTDGEEAVIVSALGSLSILIKL-GLL-------RKPAVKDILQDVLPLLC--HPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred ccCcchhhHHHHHHHHHHHHHh-ccc-------chHHHHHHHHhhhhhee--CchHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999985 221 24566777776666663 56678999998888888777653
No 65
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00027 Score=82.64 Aligned_cols=200 Identities=18% Similarity=0.138 Sum_probs=130.3
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChh-hH
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP-RV 82 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~-~~ 82 (1167)
-.++.++....+++|.+|.||+.++.. .. .+....++.+-+.++++|.++.||..|.-|...+-..-++. .-
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~------l~-v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~ 158 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGC------LR-VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED 158 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceee------Ee-ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc
Confidence 356778888899999999999988742 22 24678899999999999999999999999999886432221 12
Q ss_pred HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhcc
Q 001062 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1167)
Q Consensus 83 ~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~ 162 (1167)
..+++.|...+.+.++.+-..|..||..+.+.-+.. ....+...++..++..++ .-....-+.+|..+.+....
T Consensus 159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~-~~~~l~~~~~~~lL~al~-----ec~EW~qi~IL~~l~~y~p~ 232 (734)
T KOG1061|consen 159 SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV-NLLELNPQLINKLLEALN-----ECTEWGQIFILDCLAEYVPK 232 (734)
T ss_pred cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC-CcccccHHHHHHHHHHHH-----HhhhhhHHHHHHHHHhcCCC
Confidence 467888888888777776666666666666554421 111122233334444332 23445566677777666655
Q ss_pred chhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH---HHHHHHHHHHHHHh
Q 001062 163 LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD---DLLAKATIEVVRNL 217 (1167)
Q Consensus 163 ~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l 217 (1167)
.- .....+.+.+.+.+.+..+.|--.+...+-.+..+..+ .++..+-+.++..+
T Consensus 233 d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tll 289 (734)
T KOG1061|consen 233 DS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLL 289 (734)
T ss_pred Cc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeee
Confidence 32 35567888888888887776666666666666665555 23444444444433
No 66
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.29 E-value=0.0026 Score=69.78 Aligned_cols=188 Identities=11% Similarity=0.098 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHH
Q 001062 484 NLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNA 563 (1167)
Q Consensus 484 ~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 563 (1167)
-++.+|......++-.++...-..+...-...+...+.|+...++..+..++|.+...+.....++...-..+...++..
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~ 485 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK 485 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 36777777666665544433344466777778888888988899999999999987765442210000001122222222
Q ss_pred HHHHhhcCC-CCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcC-------chhhHHHHHHHHHHhcCC-CCC
Q 001062 564 IMSRLTNQD-QDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGN-------EITRLTAVKAFAVIAASP-LHI 634 (1167)
Q Consensus 564 ll~~l~~~d-~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~-------e~~r~~a~~al~~i~~~~-~~~ 634 (1167)
.+......+ ...+||.+|+.++|.+.........+-+..++..-+..+.. -.+|=.++.++|++.... .+.
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 222221112 23489999999999988665433333444444444433322 135678999999999543 222
Q ss_pred chhhHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Q 001062 635 DLTCVLEHVIAELTAFLRK-ANRALRQATLGTMNSLVV 671 (1167)
Q Consensus 635 ~~~~~~~~~l~~L~~~L~~-~~~~lr~~al~~L~~l~~ 671 (1167)
+-.+|.+.+.+.|..++++ .|--+|..|..+|..-..
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 3357899999999999876 466788888777765443
No 67
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.27 E-value=6.9e-05 Score=90.53 Aligned_cols=254 Identities=15% Similarity=0.104 Sum_probs=172.9
Q ss_pred hHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh---h----hHHHHHHHHHH
Q 001062 19 DFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE---P----RVVEMTDKLCI 91 (1167)
Q Consensus 19 d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~---~----~~~~l~~~L~~ 91 (1167)
+-|-.|+.-|. .+.. ..-|+..+++|++.++.++.|+..+||.+|+.+|..+..-+++ . ..+.+++.|-.
T Consensus 438 ~tK~~ALeLl~-~lS~--~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 438 QTKLAALELLQ-ELST--YIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred hhHHHHHHHHH-HHhh--hcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 44556655443 3332 2235688999999999999999999999999999977754432 2 24677888877
Q ss_pred HhcCC-CcchhcHHHHHHHHHHh------------------hcCCc---------hhHHHHHHHHHHHHH-HhhhccCCC
Q 001062 92 KLLNG-KDQHRDIASIALKTIIA------------------EVTTS---------SLAQSIHTSLTPQLT-KGITLKDMN 142 (1167)
Q Consensus 92 ~~~~~-~~~~r~~a~~aL~~~~~------------------~~~~~---------~~~~~~~~~i~p~Ll-~~l~~~~~~ 142 (1167)
.+.+. ...+|-..+..|..+.. +.+.+ ....+..+ .+.+++ ..+.++ .
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~-~V~~~v~sLlsd~--~ 591 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH-TVEQMVSSLLSDS--P 591 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH-HHHHHHHHHHcCC--c
Confidence 77763 33456544443333220 11111 11122222 222333 333333 4
Q ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHhhcCC
Q 001062 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL-LAKATIEVVRNLRSKG 221 (1167)
Q Consensus 143 ~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~-~~~l~~~l~~~l~~~~ 221 (1167)
+.||..-++-+..++.-||+. ..-+.|+++++..|++.++.+|..=+.-|..++.+.+..- =+-++|-+.+++.++.
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~E 669 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGE 669 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcc
Confidence 789999999999999999986 3456789999999999999999999999888888888763 3447888889998875
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC
Q 001062 222 AKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1167)
Q Consensus 222 ~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~ 286 (1167)
+ .+...+++++..+++..-- =+|++-+++.-+.-.+-. ...=+|.+++..+....+...
T Consensus 670 E--~Viv~aL~~ls~Lik~~ll-~K~~v~~i~~~v~PlL~h---PN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 670 E--AVIVSALGSLSILIKLGLL-RKPAVKDILQDVLPLLCH---PNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred h--hhHHHHHHHHHHHHHhccc-chHHHHHHHHhhhhheeC---chHHHHHHHHHHHHHHHhhhh
Confidence 4 6777888899888885311 144555565555555556 667799999888887776554
No 68
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.0067 Score=66.73 Aligned_cols=118 Identities=21% Similarity=0.206 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHHHhcCcccc--cc
Q 001062 525 YKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ---DQDQEVKECAISCMGLVISTFGDNLG--AE 599 (1167)
Q Consensus 525 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~---d~~~~vr~~Ai~alg~l~~~~g~~l~--~~ 599 (1167)
++|+..|++.+|.+.+.+.+.. .+-+..+++.-+..+... .....||-+|.+++|+++++-.-.+. +.
T Consensus 498 dkV~~navraLgnllQvlq~i~-------~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~w 570 (728)
T KOG4535|consen 498 DKVKSNAVRALGNLLQFLQPIE-------KPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPW 570 (728)
T ss_pred hhhhhHHHHHHhhHHHHHHHhh-------hccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCc
Confidence 5899999999999888776532 223344444333333221 22457999999999999987322222 35
Q ss_pred hhhhHHHHHHhh---cCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHH
Q 001062 600 LPACLPVLVDRM---GNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLR 652 (1167)
Q Consensus 600 ~~~~l~~L~~~L---~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~ 652 (1167)
-+.+|++|+.-+ +|=.+|..|..++..... +.++.+.++-....+...|.
T Consensus 571 A~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~---re~~~d~~~Lsw~~lv~aLi 623 (728)
T KOG4535|consen 571 ASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK---REQYGDQYALSWNALVTALQ 623 (728)
T ss_pred hHHHHHHHHHHHHHhccceEeehhhhhhcCCCC---cccchhHHhHHHHHHHHHHH
Confidence 567777777654 344467777777654432 23344444444455555443
No 69
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.16 E-value=0.033 Score=66.67 Aligned_cols=159 Identities=11% Similarity=0.229 Sum_probs=132.0
Q ss_pred HHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHH
Q 001062 366 KLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVG 445 (1167)
Q Consensus 366 ~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~ 445 (1167)
.+|..+.|.+++.++...-.+|..-+.++.-++... |...+-+.+|.+++.+.+.|.-++..+|..
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v--------------P~~vllp~~~~LlPLLLq~Ls~~D~~v~vs 928 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNV--------------PKQVLLPQFPMLLPLLLQALSMPDVIVRVS 928 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcC--------------CHHhhccchhhHHHHHHHhcCCCccchhhh
Confidence 588899999999887333456666777888887754 334667888999999999999999999999
Q ss_pred HHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCC-CchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCc
Q 001062 446 AFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSS-TSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERY 524 (1167)
Q Consensus 446 ~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~-~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~ 524 (1167)
.+.++..+....+.-...|+..++|.+...=.|.+. ...+|..|++++..+.+..+...+.+|-+..+..+.+.+.|+-
T Consensus 929 tl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen 929 TLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK 1008 (1030)
T ss_pred HhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH
Confidence 999998888777777788999999999977666543 2579999999999999977788899999999999999999987
Q ss_pred hHHHHHHHHHHHHH
Q 001062 525 YKVTAEALRVCGEL 538 (1167)
Q Consensus 525 ~~v~~~al~~l~~l 538 (1167)
-.||.+|.++=+.-
T Consensus 1009 RlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 1009 RLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHHhhhh
Confidence 78999998875543
No 70
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.15 E-value=0.00024 Score=86.44 Aligned_cols=368 Identities=16% Similarity=0.201 Sum_probs=225.1
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh------
Q 001062 170 RLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY------ 243 (1167)
Q Consensus 170 ~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~------ 243 (1167)
.+++....++..+.+.+|....+++..++... -....+..+...+..... ..-..++..+..+....+.
T Consensus 63 ~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~~~e~~~~~~~~k~p--k~~~~~~~~~~~lv~~~g~p~~~~~ 137 (815)
T KOG1820|consen 63 QLLSFGLKCLDSKRVNIRDTKTQSLLRIGKLE---DIKEVVEAAKALLSFKSP--KKIAAAVAAVLSLVEEFGKPKVPSK 137 (815)
T ss_pred eeccchhhhcccccccccCcchhHHHHHHHhh---hhHHHHHHHHhhccccCc--hhHHHHHHHHHHHHHHhcCCCCccc
Confidence 45555666776676677777777777773221 133444445444332221 2233455556666554332
Q ss_pred hhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHH--HHHHHHhhccCCCCC-CCCCCCCcc
Q 001062 244 RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEI--LHLTLEYLSYDPNFT-DNMEEDSDD 320 (1167)
Q Consensus 244 ~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~i--i~~~~~~l~~dp~~~-~~~~~d~~~ 320 (1167)
.|.|+++.++ |-.+|..+.+.+..+-+.++..+.+++... .....++-.|.+... ....+....
T Consensus 138 ~~~~~~~~l~-------------D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 204 (815)
T KOG1820|consen 138 AFIKHVGSLA-------------DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPL 204 (815)
T ss_pred cccccCcccc-------------ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccc
Confidence 2344444443 235788888888888888887777655422 222222222222110 000000000
Q ss_pred cccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHH---hcCC----hhh--HHHHHHHhhHHHhhhccCChhHHHHHH
Q 001062 321 EAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI---VSRP----EML--SKLYEEACPKLIDRFKEREENVKMDVF 391 (1167)
Q Consensus 321 ~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li---~~~~----~~l--~~~~~~i~p~L~~~l~d~~~~vr~~~~ 391 (1167)
.. ....++.+.+|+-+..+-...-... .+.| +.+ .++...+-+.+...+-+..|.-|.+++
T Consensus 205 ~~----------~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eal 274 (815)
T KOG1820|consen 205 LK----------SQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEAL 274 (815)
T ss_pred cc----------cccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHH
Confidence 00 0000001111111111000000000 0000 011 135666667777778888999999999
Q ss_pred HHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHH
Q 001062 392 NTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPG 471 (1167)
Q Consensus 392 ~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~ 471 (1167)
..+..++...... .-..+...+...+...+.+.+..+...+...+..++..++..+.+|...++|.
T Consensus 275 e~l~~~l~e~~~~--------------~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~ 340 (815)
T KOG1820|consen 275 EELVAILEEAKKE--------------IVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPS 340 (815)
T ss_pred HHHHHHHhccccc--------------cccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcch
Confidence 9988888764410 00111122333344446677888888888999999999998899999999999
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCC
Q 001062 472 IEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGF 551 (1167)
Q Consensus 472 l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~ 551 (1167)
++..+.++ ...++.....++..++.++ .+..+.+.+...+++.++.++.+....++..++.+++. .
T Consensus 341 lld~lkek--k~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~-----~ 406 (815)
T KOG1820|consen 341 LLDRLKEK--KSELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK-----T 406 (815)
T ss_pred HHHHhhhc--cHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc-----C
Confidence 99999987 3578888888888887743 35678899999999999999999999999999887752 2
Q ss_pred CCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 001062 552 DFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDN 595 (1167)
Q Consensus 552 ~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~ 595 (1167)
.+..-+..+.|.++.... |.+.+||.+|..+++.+...+|+.
T Consensus 407 ~~~~t~~~l~p~~~~~~~--D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHIN--DTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred cchhhHHHHhHHHhhhcc--CCcHHHHHHHHHHHHHHHHHhhHH
Confidence 456678899999988775 778899999999999999998863
No 71
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0002 Score=75.60 Aligned_cols=264 Identities=17% Similarity=0.178 Sum_probs=153.9
Q ss_pred HHHHHHhcCCChhHHhHhHHHHHHHh-cccccCCChHHHHHH--HHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh-H
Q 001062 7 AAILEKITGKDKDFRYMATSDLLNEL-NKESFKADADLEVKL--SNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR-V 82 (1167)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l-~~~~~~~~~~~~~~i--~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~-~ 82 (1167)
..++--.+++||.+...|...|.+.- +.++- ...-++ ++.|+..+..++.+||..|++||..|+..-..+. +
T Consensus 88 epvl~llqs~d~~Iq~aa~~alGnlAVn~enk----~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 88 EPVLALLQSCDKCIQCAAGEALGNLAVNMENK----GLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hHHHHHHhCcchhhhhhhhhhhccceeccCCc----eEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhh
Confidence 44555678999999999988886432 11110 000111 3456777778899999999999999986522211 1
Q ss_pred H--HHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHH--
Q 001062 83 V--EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLH-- 158 (1167)
Q Consensus 83 ~--~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~-- 158 (1167)
. .-+..|.....+++..+|.-+.-+|.++--.... ...-+..--+|.|+..+... +..++..+...++.+.-
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~En--Rr~LV~aG~lpvLVsll~s~--d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSREN--RRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhh--hhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhhhhhhH
Confidence 0 1123333322334334455444444433211111 11112223457777777654 58899999999987763
Q ss_pred HhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH--HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001062 159 KFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD--LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVG 235 (1167)
Q Consensus 159 ~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~--~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~ 235 (1167)
..-+.+.+..|.+++.+.+...+++++++-.|..+++.++.--... +. ..-+|.+++.++++-. ...-..+.++-
T Consensus 240 ~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~--plilasVaCIr 317 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMG--PLILASVACIR 317 (550)
T ss_pred HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcch--hHHHHHHHHHh
Confidence 3344555777889999999999999999999999999988633221 11 1236777788877654 33334444553
Q ss_pred HHHHHhhhh--h--hcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC
Q 001062 236 ALSRAVGYR--F--GPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1167)
Q Consensus 236 ~l~~~~~~~--~--~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~ 286 (1167)
.++-.-... + .-|+.. +...+... +.+|.+=.|..++..++....
T Consensus 318 nisihplNe~lI~dagfl~p----LVrlL~~~--dnEeiqchAvstLrnLAasse 366 (550)
T KOG4224|consen 318 NISIHPLNEVLIADAGFLRP----LVRLLRAG--DNEEIQCHAVSTLRNLAASSE 366 (550)
T ss_pred hcccccCcccceecccchhH----HHHHHhcC--CchhhhhhHHHHHHHHhhhhh
Confidence 343321110 0 112232 33344442 456677778888888876543
No 72
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.14 E-value=0.045 Score=65.58 Aligned_cols=133 Identities=20% Similarity=0.226 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhhccCCccchhhHHHHHhhhccccCc--------ccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChh
Q 001062 927 SVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEP--------AKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEK 998 (1167)
Q Consensus 927 ~~~~i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~~--------~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~ 998 (1167)
+..+|++.+.+++....-+.|.+-.+.|.....+-| ..++|.|.+.+.-++..+|.-....++.++.....-
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 566777777777664445677777777766655444 378899999888788889988888888877766544
Q ss_pred hhhhhhHhHHHHHhhccCCC---hHHHHHHHHHHHHHHhcCch-hhhchhhhhhHHHHHhhhccc
Q 001062 999 IDEIIFPEISSFLMLIKDQD---RHVRRAAVLALSTFAHNKPN-LIKGLLPELLPLLYDQTIVKK 1059 (1167)
Q Consensus 999 ~~~~l~~~i~~~l~~l~d~d---~~vr~~a~~~L~~~a~~~p~-~~~~~l~~llp~L~~~~~~~~ 1059 (1167)
..+++..+++.++..=.|.| .-||..|+.||+.+...-|. .+.++-++++-.|.+-+..|+
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK 1008 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK 1008 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH
Confidence 56678888888887655655 56999999999999996665 677888889888887776554
No 73
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.14 E-value=1.4e-05 Score=70.65 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhc
Q 001062 226 MIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1167)
Q Consensus 226 ~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~ 305 (1167)
.|++++.++.+++...|..+.+|++.++|.++.++++ .|..+|.+|.+++..++..++.++-+|++++++.+.+.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D---~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDD---QDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788999999999999999999999999999999998 8999999999999999999999999999999999998774
No 74
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.038 Score=64.25 Aligned_cols=203 Identities=16% Similarity=0.213 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHH
Q 001062 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQE 423 (1167)
Q Consensus 344 ~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~ 423 (1167)
=||+-|+-++-.+...+|+.+. ...|.|.+++.|+++.|..+++..+.++.+.-. ...
T Consensus 159 YvRKkAIl~lykvFLkYPeAlr----~~FprL~EkLeDpDp~V~SAAV~VICELArKnP--------------kny---- 216 (877)
T KOG1059|consen 159 YVRKKAILLLYKVFLKYPEALR----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNP--------------QNY---- 216 (877)
T ss_pred HHHHHHHHHHHHHHHhhhHhHh----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCC--------------ccc----
Confidence 4899999999888888997654 556788899999999999999999999987642 111
Q ss_pred HHHHHHHHHHHhccC--ChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhcc-C
Q 001062 424 VSKIVKSINRQLREK--SIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS-H 500 (1167)
Q Consensus 424 ~~~l~~~l~~~L~~~--~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~-~ 500 (1167)
=++.+.+++.|..+ +| +-.-.+.+|+.|+-.-|.- -..++|.|...++... ...+-.+ ++.+++.. .
T Consensus 217 -L~LAP~ffkllttSsNNW-mLIKiiKLF~aLtplEPRL----gKKLieplt~li~sT~-AmSLlYE---CvNTVVa~s~ 286 (877)
T KOG1059|consen 217 -LQLAPLFYKLLVTSSNNW-VLIKLLKLFAALTPLEPRL----GKKLIEPITELMESTV-AMSLLYE---CVNTVVAVSM 286 (877)
T ss_pred -ccccHHHHHHHhccCCCe-ehHHHHHHHhhccccCchh----hhhhhhHHHHHHHhhH-HHHHHHH---HHHHheeehh
Confidence 23444556666543 55 3334455566665433332 2344555555554211 1123333 34444332 1
Q ss_pred --CCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHH
Q 001062 501 --SPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVK 578 (1167)
Q Consensus 501 --~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr 578 (1167)
+..+-...+...+.-+-..+.|.+++.+.-++.+++.+.+. +| ..++.--+.++.++. |.|..+|
T Consensus 287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~kt-Hp----------~~Vqa~kdlIlrcL~--DkD~SIR 353 (877)
T KOG1059|consen 287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT-HP----------KAVQAHKDLILRCLD--DKDESIR 353 (877)
T ss_pred ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh-CH----------HHHHHhHHHHHHHhc--cCCchhH
Confidence 11111234455666666777888999999999999888764 22 123334445666675 5677899
Q ss_pred HHHHHHHHHHHHh
Q 001062 579 ECAISCMGLVIST 591 (1167)
Q Consensus 579 ~~Ai~alg~l~~~ 591 (1167)
-+|+.-+-.++..
T Consensus 354 lrALdLl~gmVsk 366 (877)
T KOG1059|consen 354 LRALDLLYGMVSK 366 (877)
T ss_pred HHHHHHHHHHhhh
Confidence 9998888777643
No 75
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.011 Score=69.26 Aligned_cols=363 Identities=14% Similarity=0.168 Sum_probs=213.5
Q ss_pred hHHHHHHHHHHHHHHhhhc----cCC------ChhHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHhhhhcCChH---H
Q 001062 120 LAQSIHTSLTPQLTKGITL----KDM------NTEIRCECL-DILCDVLHKFGNLMSNDHERLLSALLPQLSANQA---S 185 (1167)
Q Consensus 120 ~~~~~~~~i~p~Ll~~l~~----~~~------~~~v~~~~~-~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~---~ 185 (1167)
+...+.+.++|.++.-+.. ..+ +.-++.+|+ ...+--...+...+ ++..=+.+.+++.++.+.. .
T Consensus 424 lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~-dF~~Wl~~~llpEl~~~~~~~Ri 502 (978)
T KOG1993|consen 424 LFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNIL-DFDKWLQEALLPELANDHGNSRI 502 (978)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHhhCHHhhhcccchhH
Confidence 3455667777887766522 110 112344443 34443333333333 4455566777777665432 8
Q ss_pred HHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH---hhhhhhcchhhhHHHHHHHhh
Q 001062 186 VRKKSVSCIASLASSL-SDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA---VGYRFGPHLGDTVPVLIDYCT 261 (1167)
Q Consensus 186 vrk~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~---~~~~~~p~l~~lvp~l~~~l~ 261 (1167)
+|+|.+-.+|+-+..- ..+.-..+-..+++.+++.++ -.+|-++.+++..+..- .++.|-||++.+...+++.+.
T Consensus 503 iRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D-~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~ 581 (978)
T KOG1993|consen 503 IRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQND-LVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLK 581 (978)
T ss_pred HHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCcccc-ceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHH
Confidence 8999988888877643 333333444555666666543 46777888888888764 567899999999999999887
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCc
Q 001062 262 SASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDA 341 (1167)
Q Consensus 262 ~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~ 341 (1167)
.. +.-|.|-..+.+++.++.+.++.++||..++++.+-....-. + +++
T Consensus 582 ~~--~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s--------------------~---------~e~- 629 (978)
T KOG1993|consen 582 AV--EECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES--------------------E---------EEP- 629 (978)
T ss_pred HH--hhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh--------------------c---------cCc-
Confidence 75 456788899999999999999999999999998887666310 0 000
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhh--ccCC-hhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHH
Q 001062 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF--KERE-ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1167)
Q Consensus 342 sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l--~d~~-~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~ 418 (1167)
-+|-+-..++..++.+.+..=..+|.-..|.+--.. ..++ -..-.+.+..+...+....
T Consensus 630 --lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~---------------- 691 (978)
T KOG1993|consen 630 --LLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ---------------- 691 (978)
T ss_pred --HHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc----------------
Confidence 456666677777777655332345555566553222 1221 1233456666666655432
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhc-CchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHh
Q 001062 419 LLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL-PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 497 (1167)
Q Consensus 419 ~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~-~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~ 497 (1167)
.+.+.+-.+++.+...+....+. -..++.++.+-+--. +..+..|...++..+.+.+.|-. .+--+..+..+..++
T Consensus 692 ~l~p~ll~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr--~egl~avLkiveili 768 (978)
T KOG1993|consen 692 KLTPELLLLFPHLLYIIEQSTEN-LPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVR--NEGLQAVLKIVEILI 768 (978)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHH
Confidence 12233333444444444333332 224555554433322 33446788888888877776421 122233334444455
Q ss_pred ccCCCCchhh-hhHhhHHHHHHHh--cCCchHHHHHHHHHHHHHH
Q 001062 498 SSHSPPVFHP-YIKALSSPVLAAV--GERYYKVTAEALRVCGELV 539 (1167)
Q Consensus 498 ~~~~~~~~~~-~l~~ll~~l~~~l--~d~~~~v~~~al~~l~~l~ 539 (1167)
++.. .+.+ +...++|.+...+ +++++-+.++-+.+++.+.
T Consensus 769 ~t~~--il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~ 811 (978)
T KOG1993|consen 769 KTNP--ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARIS 811 (978)
T ss_pred hhhH--HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 5421 3332 4556666666655 5778888877777777654
No 76
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.04 E-value=0.0004 Score=76.30 Aligned_cols=209 Identities=15% Similarity=0.187 Sum_probs=153.2
Q ss_pred HHHHHHHHHhcCC-CcchhcHHHHHHHH-HHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc
Q 001062 84 EMTDKLCIKLLNG-KDQHRDIASIALKT-IIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 84 ~l~~~L~~~~~~~-~~~~r~~a~~aL~~-~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
.++..++..+.+. ..+.+..|..-|-. .+++. . .++.++.+.|+-.+++.|.+.+ +...|.-|+.+|..+++.-+
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~s-f-svWeq~f~~iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGS-F-SVWEQHFAEILLLLLEVLSDSE-DEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccc-h-hHHHHHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHhch
Confidence 4555666555432 44456666654444 34332 2 4788899999999999998844 57789999999999999988
Q ss_pred cchhHHHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 162 NLMSNDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
.-+..+.+.-+..+++.-.+.+. .+|.++-.|+..++.+.+..-+..+.+.|+. . +...--.++..+..+++.
T Consensus 363 ~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~--D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----A--DEPRAVAVIKMLTKLFER 436 (516)
T ss_pred HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----C--cchHHHHHHHHHHHHHhh
Confidence 77777777777788888777766 6666666677788888887655555555543 2 223333456677777776
Q ss_pred hh-hhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC-ccccccHHHHHHHHHHhh
Q 001062 241 VG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP-RDISSYCDEILHLTLEYL 304 (1167)
Q Consensus 241 ~~-~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~-~~~~~~l~~ii~~~~~~l 304 (1167)
.+ +.+.+-++.++|.+++..+. .+..+|.+|.-+|-.++.+.| ++|.||+.++-..=++++
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S---~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDS---TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcC---chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 55 46888899999999999888 678899999999999999999 889999998865544444
No 77
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00027 Score=74.61 Aligned_cols=269 Identities=19% Similarity=0.166 Sum_probs=166.2
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccc-cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKES-FKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~-~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
+.-+.+-.++.|+|+||-++..+.+.--... -+.=.+..+++++.|+..++|+++.|+.+|...++.++..- ++..+
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt--~Yq~e 287 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT--EYQRE 287 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc--hhhhH
Confidence 4456677889999999998888765432211 11112566789999999999999999999999999888432 12222
Q ss_pred H-----HHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHH-HHHHHHHHhhhccCCChhHHHHHHHHHHHHHH
Q 001062 85 M-----TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLH 158 (1167)
Q Consensus 85 l-----~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~-~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~ 158 (1167)
+ ++.|...+.++....--....+++++--. |-+ ...+.+ -.+..|+..|...+ +++++..|.++|-.++.
T Consensus 288 iv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plN--e~lI~dagfl~pLVrlL~~~d-nEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 288 IVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLN--EVLIADAGFLRPLVRLLRAGD-NEEIQCHAVSTLRNLAA 363 (550)
T ss_pred HHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCc--ccceecccchhHHHHHHhcCC-chhhhhhHHHHHHHHhh
Confidence 2 55666666666544333334444443211 100 000111 12223444444443 67799999999999987
Q ss_pred HhccchhHHH-HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HH-H-HHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001062 159 KFGNLMSNDH-ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LL-A-KATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1167)
Q Consensus 159 ~~g~~l~~~~-~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~-~-~l~~~l~~~l~~~~~~~~~r~~~~~~l 234 (1167)
......+... ..-++.+...+-+....+|.+--.|++.++-.-.++ .| + .+++.++....+.+ .++|..+..++
T Consensus 364 sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s--~Ev~gNaAaAL 441 (550)
T KOG4224|consen 364 SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSES--EEVRGNAAAAL 441 (550)
T ss_pred hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccc--hhhcccHHHHH
Confidence 6554433221 223555556665666699999999999988665444 22 2 24556665555543 47888888888
Q ss_pred HHHHHHhhh--hh----hcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC
Q 001062 235 GALSRAVGY--RF----GPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1167)
Q Consensus 235 ~~l~~~~~~--~~----~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~ 285 (1167)
+.++..... ++ ..-...+-.++..++.. ++-.+|..+.+++..+.+.-
T Consensus 442 ~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S---~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 442 INLSSDVEHYARVIEAWDHPVQGIQGRLARFLAS---HELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHhC
Confidence 888765322 22 11124455566666666 56678888999998888753
No 78
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.00 E-value=0.00033 Score=85.25 Aligned_cols=183 Identities=19% Similarity=0.227 Sum_probs=145.1
Q ss_pred CCcchHHHHHHHHHHHHHHhcCC-hhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchH
Q 001062 339 EDASWKVRRAAAKCLAALIVSRP-EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1167)
Q Consensus 339 dd~sw~vR~aA~~~l~~li~~~~-~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~ 417 (1167)
.+..|+-|..|...+...++..+ +....++..+...+--+++|.+-+|..-+..++..+....+
T Consensus 263 ~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr--------------- 327 (815)
T KOG1820|consen 263 LSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR--------------- 327 (815)
T ss_pred hccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc---------------
Confidence 44569999999999888887665 22223444444555455789898888888888888887765
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHh
Q 001062 418 WLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 497 (1167)
Q Consensus 418 ~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~ 497 (1167)
..+..+...+++.++..+.++...+|.+...++..+.. .-++..+.+.|..++.++ ++..+.++..++...+
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGK--NPQIKGECLLLLDRKL 399 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHH
Confidence 24567778888888999999999999998888888776 334778888999999887 4688999999999988
Q ss_pred ccCCC-CchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 001062 498 SSHSP-PVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1167)
Q Consensus 498 ~~~~~-~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1167)
...++ ..+...+..++|.++...+|.+..||..|+.+++.+.+.+|.
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 77663 345567899999999999999999999999999999988765
No 79
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.99 E-value=0.00049 Score=75.91 Aligned_cols=186 Identities=17% Similarity=0.143 Sum_probs=132.0
Q ss_pred chHHHHHHHHHHHHhcc-CCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHH
Q 001062 483 SNLKIEALTFTRLVLSS-HSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY 561 (1167)
Q Consensus 483 ~~~~~~al~~l~~l~~~-~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 561 (1167)
...|..++..+..++.. +.++.+......++..+.++++-...+-+.-|+.+++-++-.+|+ +.+-...++.+.
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~-----g~~~~ei~~~~~ 131 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA-----GEDSEEIFEELK 131 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC-----CccHHHHHHHHH
Confidence 56799999887777754 333444556778899999999755556677788888888877764 223455777888
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchh---hhHHHHHH--hhc--C----------chhhHHHHHHH
Q 001062 562 NAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELP---ACLPVLVD--RMG--N----------EITRLTAVKAF 624 (1167)
Q Consensus 562 ~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~---~~l~~L~~--~L~--~----------e~~r~~a~~al 624 (1167)
|.+...+.+......+|..++.|+|.+....+..... .. .++..+.. ..+ . ......|+.++
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~-~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEE-TEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhH-HHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 8888888766556688999999999987766654422 23 44442221 111 1 12456789999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhC
Q 001062 625 AVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYG 674 (1167)
Q Consensus 625 ~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~ 674 (1167)
+-++.......+..++...++.|..+|.+.+..+|.+|-++|+.|.+...
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 88874332223567778899999999999999999999999999987654
No 80
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.97 E-value=0.04 Score=74.61 Aligned_cols=532 Identities=14% Similarity=0.192 Sum_probs=285.1
Q ss_pred CCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHH---HHHHHH
Q 001062 15 GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM---TDKLCI 91 (1167)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l---~~~L~~ 91 (1167)
..+.++|++|..-+.+.+......+--+....++..++..+.|+++-+|-.|+..+.......+++..... +..+..
T Consensus 144 ~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd 223 (2341)
T KOG0891|consen 144 GERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQREAKLKPQWYQRCVD 223 (2341)
T ss_pred hhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhccchhhhHHHHHHHH
Confidence 56678888988888888876544444578899999999999999999999999998876655544431111 111211
Q ss_pred H----hcCCCcchhcHHH-------------------HHHHH-------------HHhhcCCc-------hhHHHHHHHH
Q 001062 92 K----LLNGKDQHRDIAS-------------------IALKT-------------IIAEVTTS-------SLAQSIHTSL 128 (1167)
Q Consensus 92 ~----~~~~~~~~r~~a~-------------------~aL~~-------------~~~~~~~~-------~~~~~~~~~i 128 (1167)
. +.+.... -.++. ++.+. ++.+..+. .+...+++..
T Consensus 224 ~~~~~l~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 302 (2341)
T KOG0891|consen 224 EARHGLSSDGVK-IHASLLVYNELLRISDPFLEKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTE 302 (2341)
T ss_pred hccccccchHHH-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHH
Confidence 1 1111100 00000 11111 01111100 1111223333
Q ss_pred HHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHH---HHHHHHHHHHHhhcCHHH
Q 001062 129 TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVR---KKSVSCIASLASSLSDDL 205 (1167)
Q Consensus 129 ~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vr---k~a~~~l~~l~~~~~~~~ 205 (1167)
+-.++..+.. +...++..++.+.-..+..+.++...+...+.+.+....-..+ +....|++.++...+...
T Consensus 303 ~~~~l~~~~~------~~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 376 (2341)
T KOG0891|consen 303 MDHLLSILRK------EKTRAFVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASALGPAD 376 (2341)
T ss_pred HHHHHHhhhc------cchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhccCHHH
Confidence 3333332221 1145566677777777777766666655555555543322222 235668888888888888
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhh-----c-----------------
Q 001062 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTS-----A----------------- 263 (1167)
Q Consensus 206 ~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~-----~----------------- 263 (1167)
+..+...++..+.+.... .....++-.++...|..-.+-.+.++..+-..+.. .
T Consensus 377 ~~~~~~~il~~~~~~~~~----~~l~e~l~~l~~rl~~l~~~i~~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p~~~~~ 452 (2341)
T KOG0891|consen 377 QKDLNKDILEQMFKCTLS----DSLLERLFILSQRIPKLGQSIQDRLLNMTSQVLSGKAFIQPGQFTVLPKLAIPKAILQ 452 (2341)
T ss_pred HHhHHHHHHHHHhcCCch----HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhCccccCccccCccchhcccchhhh
Confidence 877777788777654332 22334444444444332221111111111111111 0
Q ss_pred -CCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHH-hhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCc
Q 001062 264 -SENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLE-YLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDA 341 (1167)
Q Consensus 264 -~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~-~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~ 341 (1167)
.+++..--..|+++++.+..... . +...+..++. ++.. |++
T Consensus 453 ~~~~~~~~~~~a~~~l~~~~~~~~-~----~~~~~~~~~~~~~~~-------------------------------~~~- 495 (2341)
T KOG0891|consen 453 KTGDSTDDIQLAFKTLGGFKFSGY-S----LTLFVQQCVDSYLEA-------------------------------DDS- 495 (2341)
T ss_pred hcccccHHHHHHHHHHhhhhhhhh-h----HHHHHHHHHHHHHhc-------------------------------ccH-
Confidence 00111113335555555543210 0 1111122111 1110 000
Q ss_pred chHHHHHHHHHHHHHHhcCCh-------hhHHHHHHHhhHHHhh-hccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCC
Q 001062 342 SWKVRRAAAKCLAALIVSRPE-------MLSKLYEEACPKLIDR-FKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNE 413 (1167)
Q Consensus 342 sw~vR~aA~~~l~~li~~~~~-------~l~~~~~~i~p~L~~~-l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~ 413 (1167)
.+|+.++.++..++..... .+ ++++.++..+... +.+.++.+|..++..+..-
T Consensus 496 --e~r~~~~l~~~~ll~~~~~~~~~~~~~~-~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~---------------- 556 (2341)
T KOG0891|consen 496 --EIRKNAALTCCELLKYDIICSQTSPHAL-QVVKEVLSALLTVAIADTDPDIRIRVLSSLNER---------------- 556 (2341)
T ss_pred --HHHHHHHHHHHHHHhhhhhhhcccchHH-HHHHHHHHHHHHHhccCCCcchhhhHHhhhccc----------------
Confidence 6888887777666554321 11 2233333333322 3566777776665555410
Q ss_pred CchHHHHHH-HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHH
Q 001062 414 LNPRWLLKQ-EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTF 492 (1167)
Q Consensus 414 ~~p~~~l~~-~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~ 492 (1167)
.... --|..+..++..+.+.....+..+...++.+++..|..+.+++.........-++-.. ....+..+...
T Consensus 557 -----~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg-~~r~~~~~a~~ 630 (2341)
T KOG0891|consen 557 -----FDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSG-MARTKEESAKL 630 (2341)
T ss_pred -----hhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcc-hHHhHHHHHHH
Confidence 0000 1144555566666666666666777677766666665554444443333332222111 11233333333
Q ss_pred HHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCC
Q 001062 493 TRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQD 572 (1167)
Q Consensus 493 l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d 572 (1167)
+..++.. .+.-+.+|+.+++-.+...+++....+...++.+.++++...|. +...+++.+++.+.+.+...
T Consensus 631 ~~~~i~~-~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~-------~~~~~~~~~~~~~~~~l~~~- 701 (2341)
T KOG0891|consen 631 LCELIIS-SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGE-------EMVKWVDELFSLIIKMLQDQ- 701 (2341)
T ss_pred hhHHHHH-HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccc-------hhhhccchHHHHHHHHHHHh-
Confidence 3333332 23456788899999999999988889999999999999987653 34456666677666666532
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccccc--chhhhHHHHHHhhcCch---hhHHHHHHHHHHh
Q 001062 573 QDQEVKECAISCMGLVISTFGDNLGA--ELPACLPVLVDRMGNEI---TRLTAVKAFAVIA 628 (1167)
Q Consensus 573 ~~~~vr~~Ai~alg~l~~~~g~~l~~--~~~~~l~~L~~~L~~e~---~r~~a~~al~~i~ 628 (1167)
....-|..+..++|.+.+..|-.+.| ..+.++..+.+.++.+. .|..+++.+|...
T Consensus 702 s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 702 SSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred hhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 23456889999999999988876666 45777888777665443 5677888887543
No 81
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=97.96 E-value=1.6e-06 Score=83.97 Aligned_cols=125 Identities=19% Similarity=0.217 Sum_probs=96.0
Q ss_pred ccchHHHHHhhcCCChhhHHHHHHHHHHHhccCCh----hh---hhh---------hhHhHHHHHhhccCCChHHHHHHH
Q 001062 963 AKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPE----KI---DEI---------IFPEISSFLMLIKDQDRHVRRAAV 1026 (1167)
Q Consensus 963 ~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~----~~---~~~---------l~~~i~~~l~~l~d~d~~vr~~a~ 1026 (1167)
..++|.++..+.-....+|.+-||+|||.++++.+ +| ++. +..++..+..++.| +.+||..+.
T Consensus 8 ~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~ 86 (169)
T PF08623_consen 8 DQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCH 86 (169)
T ss_dssp HHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHH
Confidence 36788898888877788999999999999998864 11 222 23345566678999 899999999
Q ss_pred HHHHHHHhcCchhhhchhhhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhh
Q 001062 1027 LALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDS 1094 (1167)
Q Consensus 1027 ~~L~~~a~~~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~ 1094 (1167)
.+|.+++...|..+.++++.+.+.+-+.+..| +.-.+.|+.++.--|+.|++++++..+-..
T Consensus 87 ~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k------~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~ 148 (169)
T PF08623_consen 87 LMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKK------LKENAVKQEIEKQQELIRSVLRAVKALNSK 148 (169)
T ss_dssp HHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----------TTS-HHHHHHHHHHHHHHHHHHHHH-HS
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHhhcc------CCCCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998877543 345678999999999999999999998444
No 82
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00055 Score=71.61 Aligned_cols=215 Identities=15% Similarity=0.163 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccC
Q 001062 61 DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD 140 (1167)
Q Consensus 61 ~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~ 140 (1167)
+|...|...+-++-.+... -+++|.+.+.+.+-+..-.+.+-.+.+++.-.......-+-.-++|++++.|...+
T Consensus 53 dv~e~a~ss~i~meqq~~~-----elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q 127 (526)
T COG5064 53 DVSEEAESSFIPMEQQFYS-----ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ 127 (526)
T ss_pred cccchhhhccCchhHHhhh-----hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc
Confidence 4555566554444433322 24666666655544434455555666553321112333344567899999885432
Q ss_pred CChhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH---HHHH-HHHHHHHH
Q 001062 141 MNTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD---DLLA-KATIEVVR 215 (1167)
Q Consensus 141 ~~~~v~~~~~~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~---~~~~-~l~~~l~~ 215 (1167)
..-.+.+|--+|..+..-...+-. -....-+|.+.+.|.+++..||..++=|||.++.-.+. -.++ ..++.++.
T Consensus 128 -~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ 206 (526)
T COG5064 128 -RDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLG 206 (526)
T ss_pred -hhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHH
Confidence 233466777777766654332211 01123467788888888889999999999999854322 1221 24555666
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHH-hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 001062 216 NLRSKGAKPEMIRTNIQMVGALSRA-VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 216 ~l~~~~~~~~~r~~~~~~l~~l~~~-~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~ 284 (1167)
.+.+...+....+.+--+++.+||. -|.-=-..+...+|.+.+.+-. .|+|+---|+|++..+...
T Consensus 207 ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys---~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 207 LLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS---RDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHhccC
Confidence 6655443345667888899999985 2221122457788998888877 7888888889998877654
No 83
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.031 Score=66.01 Aligned_cols=488 Identities=14% Similarity=0.156 Sum_probs=260.6
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHH
Q 001062 106 IALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQAS 185 (1167)
Q Consensus 106 ~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~ 185 (1167)
.|++.++..+.-. .=+..+.|.+++.++..+ -+.+.-+..-+ .+++..=.......+..+++...+++|.
T Consensus 32 ~a~kkvIa~Mt~G----~DvSslF~dvvk~~~T~d--lelKKlvyLYl----~nYa~~~P~~a~~avnt~~kD~~d~np~ 101 (734)
T KOG1061|consen 32 DAVKKVIAYMTVG----KDVSSLFPDVVKCMQTRD--LELKKLVYLYL----MNYAKGKPDLAILAVNTFLKDCEDPNPL 101 (734)
T ss_pred HHHHHHHhcCccC----cchHhhhHHHHhhcccCC--chHHHHHHHHH----HHhhccCchHHHhhhhhhhccCCCCCHH
Confidence 4566666655431 124456677766655432 22222222111 1222211122334567788888899999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCC
Q 001062 186 VRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASE 265 (1167)
Q Consensus 186 vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e 265 (1167)
+|..|++..+.+-. +++...+...+...+++.+. .+|+++.-+...+-...++-+.+ ..+++.+.+.+.+
T Consensus 102 iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~--yvRktaa~~vakl~~~~~~~~~~--~gl~~~L~~ll~D--- 171 (734)
T KOG1061|consen 102 IRALALRTMGCLRV---DKITEYLCDPLLKCLKDDDP--YVRKTAAVCVAKLFDIDPDLVED--SGLVDALKDLLSD--- 171 (734)
T ss_pred HHHHHhhceeeEee---hHHHHHHHHHHHHhccCCCh--hHHHHHHHHHHHhhcCChhhccc--cchhHHHHHHhcC---
Confidence 99999988776543 44556667777777777643 67877776666665544443322 4566677776666
Q ss_pred CChhHHHHHHHHHHHHHHhCCc-cccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchH
Q 001062 266 NDEELREYSLQALESFLLRCPR-DISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWK 344 (1167)
Q Consensus 266 ~~~e~re~al~~l~~l~~~~~~-~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~ 344 (1167)
+++.+-..|+.++..+.+.-|. .......+++.-++..+.. -..|.
T Consensus 172 ~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~e---------------------------------c~EW~ 218 (734)
T KOG1061|consen 172 SNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNE---------------------------------CTEWG 218 (734)
T ss_pred CCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHH---------------------------------hhhhh
Confidence 7889999999999999988764 2222333444433333320 01143
Q ss_pred HHHHHHHHHHHHHhcCCh---hhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHH
Q 001062 345 VRRAAAKCLAALIVSRPE---MLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLK 421 (1167)
Q Consensus 345 vR~aA~~~l~~li~~~~~---~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~ 421 (1167)
-+..+..+....|. ....+.+.+.|. +...+..|...+...+-.+++... ..-.
T Consensus 219 ----qi~IL~~l~~y~p~d~~ea~~i~~r~~p~----Lqh~n~avvlsavKv~l~~~~~~~---------------~~~~ 275 (734)
T KOG1061|consen 219 ----QIFILDCLAEYVPKDSREAEDICERLTPR----LQHANSAVVLSAVKVILQLVKYLK---------------QVNE 275 (734)
T ss_pred ----HHHHHHHHHhcCCCCchhHHHHHHHhhhh----hccCCcceEeehHHHHHHHHHHHH---------------HHHH
Confidence 23445555555552 222344444443 445555665555555544433221 0000
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC
Q 001062 422 QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1167)
Q Consensus 422 ~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1167)
.....+-+.+...+...+ .....++.=+.-+....|+-+...+ ..+.--.+| ..+++.+-+.++..++..
T Consensus 276 ~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~----~~Ff~kynD---PiYvK~eKleil~~la~~-- 345 (734)
T KOG1061|consen 276 LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEI----KVFFCKYND---PIYVKLEKLEILIELAND-- 345 (734)
T ss_pred HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHh----HeeeeecCC---chhhHHHHHHHHHHHhhH--
Confidence 111111122222222222 3344444444445555555332221 111112223 346777777777766542
Q ss_pred CCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHH
Q 001062 502 PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECA 581 (1167)
Q Consensus 502 ~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~A 581 (1167)
..+++++..+.....+.+.....++++++|.+...... . ..++..+++.++.+ .+ -|.+.+
T Consensus 346 -----~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-----------~-~~cv~~lLell~~~-~~-yvvqE~ 406 (734)
T KOG1061|consen 346 -----ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-----------S-NDCVSILLELLETK-VD-YVVQEA 406 (734)
T ss_pred -----hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-----------h-hhhHHHHHHHHhhc-cc-ceeeeh
Confidence 23466888888888888888899999999998654322 2 56777777777532 22 244566
Q ss_pred HHHHHHHHHhcCcccccchhhhHHHHHH---hhcCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHH
Q 001062 582 ISCMGLVISTFGDNLGAELPACLPVLVD---RMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRAL 658 (1167)
Q Consensus 582 i~alg~l~~~~g~~l~~~~~~~l~~L~~---~L~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~l 658 (1167)
+..+-.+...++..+ +.+.+.+.. .++++..|..-+..+|.-+..- + -...++..+.....++.
T Consensus 407 ~vvi~dilRkyP~~~----~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i-----~-~a~elL~~f~en~~dE~--- 473 (734)
T KOG1061|consen 407 IVVIRDILRKYPNKY----ESVVAILCENLDSLQEPEAKAALIWILGEYAERI-----E-NALELLESFLENFKDET--- 473 (734)
T ss_pred hHHHHhhhhcCCCch----hhhhhhhcccccccCChHHHHHHHHHHhhhhhcc-----C-cHHHHHHHHHhhcccch---
Confidence 677777776655432 444444443 3455666666677777665331 1 01222222222222223
Q ss_pred HHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhc--CCCchhhHHHHHHHHHHHhh
Q 001062 659 RQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLI--SDSDLHMTALALELCCTLMA 713 (1167)
Q Consensus 659 r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l--~~~d~~~~~~al~~l~~l~~ 713 (1167)
....+..|...++-+... +..-+.+++.+++.- ..+|+.++.-++..+..+..
T Consensus 474 ~~Vql~LLta~ik~Fl~~--p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~ 528 (734)
T KOG1061|consen 474 AEVQLELLTAAIKLFLKK--PTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSE 528 (734)
T ss_pred HHHHHHHHHHHHHHHhcC--CccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhc
Confidence 444556666666544332 113455666666553 23466778888877777663
No 84
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.91 E-value=0.00017 Score=63.81 Aligned_cols=88 Identities=14% Similarity=0.213 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH
Q 001062 345 VRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV 424 (1167)
Q Consensus 345 vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~ 424 (1167)
-|+++..+|.++....+..+.++++.++|.++..+.|.++.||..+++++..+.+..+ ..+-.++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---------------~~~l~~f 66 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR---------------GEILPYF 66 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 3889999999998888888889999999999999999999999999999999998865 3455688
Q ss_pred HHHHHHHHHHhccCChhhHHHHH
Q 001062 425 SKIVKSINRQLREKSIKTKVGAF 447 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~ 447 (1167)
+.|+..+.+...++++.||.++.
T Consensus 67 ~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 67 NEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHcCCchhHHHHHH
Confidence 99999999999999999998874
No 85
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.015 Score=64.75 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=106.7
Q ss_pred cchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhc---CchhhHHHHHHHHHHhcCC
Q 001062 555 PYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG---NEITRLTAVKAFAVIAASP 631 (1167)
Q Consensus 555 ~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~---~e~~r~~a~~al~~i~~~~ 631 (1167)
+.+.+.+..+..+.. |++..+|.-|+.++|..+.-.++....+....+..+...|- |+++...++.++..+....
T Consensus 254 ~lL~s~~~~la~ka~--dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKAT--DPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 567788887777764 67779999999999999876565555567777777776662 3456667788887777554
Q ss_pred CCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhc---CCCchhhH
Q 001062 632 LHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLI---SDSDLHMT 701 (1167)
Q Consensus 632 ~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l---~~~d~~~~ 701 (1167)
...++.+|+-++.-.+.++..+.+...|.+++..++.++.-.|+.-.....+.+.....+++ .++++.+.
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va 404 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA 404 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH
Confidence 55678999999999999999999999999999999999987775322222344555666653 55555443
No 86
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.16 Score=62.91 Aligned_cols=156 Identities=22% Similarity=0.324 Sum_probs=114.0
Q ss_pred chHHHHHHhcCCC----hhhHHHHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHH
Q 001062 852 HIENVIIESFQSP----FEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSS 927 (1167)
Q Consensus 852 ~~~~~l~~~l~~~----~e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~~~~~~~~~l~aLkei~~~~~~~~~~~l~~~ 927 (1167)
.+.+.+.+.+.++ +++++.||..|||+++... ..|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-----------------------------------------a~f 957 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-----------------------------------------AEF 957 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-----------------------------------------HHH
Confidence 4566677777543 5889999999999876431 123
Q ss_pred HHHHHHHHHhhcc-CCccchhhHHHHHhhhccccCc---ccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhh
Q 001062 928 VEKILNLLFNHCE-SEEEGVRNVVAECLGKIALIEP---AKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEII 1003 (1167)
Q Consensus 928 ~~~i~~~L~~~~~-~~~e~vr~~aa~~Lg~l~~~~~---~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l 1003 (1167)
++.-.+.||...+ ++..-+|..+.-++|-|+...| +..-+.|+..+.++++.+|.+++-.+-|++-...- -.
T Consensus 958 ces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmi----KV 1033 (1251)
T KOG0414|consen 958 CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMI----KV 1033 (1251)
T ss_pred HHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhh----Hh
Confidence 4444445555443 4557789889999999998776 35678899999999999999999989888776532 23
Q ss_pred hHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHH
Q 001062 1004 FPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYD 1053 (1167)
Q Consensus 1004 ~~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~~l~~llp~L~~ 1053 (1167)
+..++.+..++.|++.+||..|-.-+..+++. ++.+...||+++-.|-+
T Consensus 1034 KGql~eMA~cl~D~~~~IsdlAk~FF~Els~k-~n~iynlLPdil~~Ls~ 1082 (1251)
T KOG0414|consen 1034 KGQLSEMALCLEDPNAEISDLAKSFFKELSSK-GNTIYNLLPDILSRLSN 1082 (1251)
T ss_pred cccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc-ccchhhhchHHHHhhcc
Confidence 45677888899999999999999888887654 47777666666655543
No 87
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.021 Score=67.42 Aligned_cols=255 Identities=18% Similarity=0.184 Sum_probs=153.0
Q ss_pred HHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCHHH-----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhh
Q 001062 171 LLSALLPQLSAN-QASVRKKSVSCIASLASSLSDDL-----LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR 244 (1167)
Q Consensus 171 l~~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~~-----~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~ 244 (1167)
=++.|++.++.. ++..+-.|+.=+........++. .+.++|.+++.+++.+. .+....|+.++..+++.+|..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-FDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhhccch
Confidence 355667777665 55555555554554444444442 58899999999998764 688889999999999999986
Q ss_pred hhcchh-hhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCccccc
Q 001062 245 FGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAY 323 (1167)
Q Consensus 245 ~~p~l~-~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~ 323 (1167)
..-.+. ..+|.++.-+..- +.-++.|.++++++.+-+.-|..+-. ..-+..++.|+.+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~I--eyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a~LsylDF----------------- 305 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTI--EYIDVAEQSLQALEKISRRHPKAILQ--AGALSAVLSYLDF----------------- 305 (1051)
T ss_pred hheeecccchHHHHHhhhhh--hhhHHHHHHHHHHHHHHhhccHHHHh--cccHHHHHHHHHH-----------------
Confidence 554333 4788887766542 45679999999999998887754321 0112334444421
Q ss_pred ccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhc-CChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhC
Q 001062 324 EEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTG 402 (1167)
Q Consensus 324 ~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~-~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~ 402 (1167)
. |-.+.|.|......+-.. .++.+ .++-..+|.|...+......+...+.-++..++....
T Consensus 306 ------F-----------Si~aQR~AlaiaaN~Cksi~sd~f-~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 306 ------F-----------SIHAQRVALAIAANCCKSIRSDEF-HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred ------H-----------HHHHHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 0 124555554443333333 34443 3555677888777765556666666777777776543
Q ss_pred CCCCCccCCCCCchHHHHHHHH-HHHHHHHHHHhccCC----hhhHHHHHHHHHHHHHhcCchhHh-hhhhhHHHHHHhc
Q 001062 403 NVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKS----IKTKVGAFSVLRELVVVLPDCLAD-HIGSLIPGIEKSL 476 (1167)
Q Consensus 403 ~~~~~~~~~~~~~p~~~l~~~~-~~l~~~l~~~L~~~~----~~~r~~~~~~l~~l~~~~~~~l~~-~l~~l~~~l~~~l 476 (1167)
. +| ..|++.. +.++..+..++.-.. ..+..+.+.+|..++...|-.+.. +...|...+...|
T Consensus 368 h-----------~~-~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il 435 (1051)
T KOG0168|consen 368 H-----------GP-DKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRIL 435 (1051)
T ss_pred c-----------Ch-HHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHH
Confidence 2 23 2444433 667777777664332 234555666677776655544422 2333444444444
Q ss_pred c
Q 001062 477 N 477 (1167)
Q Consensus 477 ~ 477 (1167)
.
T Consensus 436 ~ 436 (1051)
T KOG0168|consen 436 Q 436 (1051)
T ss_pred h
Confidence 3
No 88
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.87 E-value=0.00097 Score=73.40 Aligned_cols=192 Identities=15% Similarity=0.228 Sum_probs=137.7
Q ss_pred HHHHHHHHHhcCC-ChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhhhhcChh-
Q 001062 4 LQMAAILEKITGK-DKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSEP- 80 (1167)
Q Consensus 4 ~~i~~ll~~~~~~-d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d-~~~~Vr~~A~~~l~~l~~~~~~~- 80 (1167)
..+..++.++.+. -.+-|--|+..|.+.+..+.|.+=++.-.+++..++..|+| .+...+..|.+.|..+...-+..
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 4567788888776 66789999999999998887776567788999999999999 78899999999999998644332
Q ss_pred --hHHHHHHHHHHHhcCCCcchhcHHHH-HHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 001062 81 --RVVEMTDKLCIKLLNGKDQHRDIASI-ALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1167)
Q Consensus 81 --~~~~l~~~L~~~~~~~~~~~r~~a~~-aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~ 157 (1167)
..+..+.++++...+..+++-..|.- +++.+....|.. -+..|.|.+++ . +...-..++..+..++
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-----~I~~i~~~Ilt----~--D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-----CIVNISPLILT----A--DEPRAVAVIKMLTKLF 434 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-----HHHHHhhHHhc----C--cchHHHHHHHHHHHHH
Confidence 23444666666666655554444444 444444444441 23445566655 1 2344455566777777
Q ss_pred HHhcc-chhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH
Q 001062 158 HKFGN-LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL 206 (1167)
Q Consensus 158 ~~~g~-~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~ 206 (1167)
++... .+.+..+.+.|.+++.-.+.++.|||.|+.||-.+...+|-+-+
T Consensus 435 e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m 484 (516)
T KOG2956|consen 435 ERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM 484 (516)
T ss_pred hhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh
Confidence 77654 45578889999999999999899999999999999888885433
No 89
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.024 Score=68.29 Aligned_cols=104 Identities=17% Similarity=0.090 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHH
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~ 83 (1167)
-.++.+..-++++++.+|-||+..|.. . -+++....+++.+.++++|+++.||+.|+-|+..+-+.=++-...
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~------l-~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~ 164 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSL------L-RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE 164 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHh------c-ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc
Confidence 357788888999999999999999863 1 134678899999999999999999999999999887533322222
Q ss_pred H-HHHHHHHHhcCCCcchhcHHHHHHHHHHhh
Q 001062 84 E-MTDKLCIKLLNGKDQHRDIASIALKTIIAE 114 (1167)
Q Consensus 84 ~-l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~ 114 (1167)
. .+..+...+.+.++.+-.-|..+|..+..+
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2 455555666788877777788888877665
No 90
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.14 Score=61.43 Aligned_cols=355 Identities=14% Similarity=0.107 Sum_probs=194.8
Q ss_pred CCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccC--ChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCch
Q 001062 339 EDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKER--EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNP 416 (1167)
Q Consensus 339 dd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p 416 (1167)
+-.+|..-++-+-++..+....++.....+...+... .+.+-. +......+...++++..-.+. .|
T Consensus 477 ~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~-asik~S~~n~ql~~Tss~~igs~s~~l~e-----------~P 544 (982)
T KOG2022|consen 477 DPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETS-ASIKLSAPNPQLLSTSSDLIGSLSNWLGE-----------HP 544 (982)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhc-cccccccCChhHHHHHHHHHHHHHHHHhc-----------CC
Confidence 3457998888888888888877755444433332221 111211 333444455555555443321 12
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHH
Q 001062 417 RWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV 496 (1167)
Q Consensus 417 ~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l 496 (1167)
.++++-++.+++.|. +++.-+.+...+.++++.++..+.+|...++...-..++........+...+..+|.+
T Consensus 545 -----~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyv 617 (982)
T KOG2022|consen 545 -----MYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYV 617 (982)
T ss_pred -----cccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHH
Confidence 244555555555564 2344456677799999999999999999999999988887655556788888888888
Q ss_pred hccCCCCchhhhhHhhHHHHHHHhcCC------ch--HHH-HHHHHHHHHHHHhccCCc-----ccc--C------CCCc
Q 001062 497 LSSHSPPVFHPYIKALSSPVLAAVGER------YY--KVT-AEALRVCGELVRVLRPSV-----EGL--G------FDFK 554 (1167)
Q Consensus 497 ~~~~~~~~~~~~l~~ll~~l~~~l~d~------~~--~v~-~~al~~l~~l~~~~~~~~-----~~~--~------~~~~ 554 (1167)
+....++....|+.+++..+...++.. .+ +.+ ..-+.+++.+...+.... .++ . ....
T Consensus 618 ls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il 697 (982)
T KOG2022|consen 618 LSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPIL 697 (982)
T ss_pred HHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHH
Confidence 877667777788888888777766421 11 222 223455666665543211 000 0 0112
Q ss_pred cchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCccc-ccchhhhHHHHHHhhcCchhhHHHHHHHHHHh--c--
Q 001062 555 PYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNL-GAELPACLPVLVDRMGNEITRLTAVKAFAVIA--A-- 629 (1167)
Q Consensus 555 ~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l-~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~--~-- 629 (1167)
..+.++++.+-..+..--.+..|-+.+...++.=+...++.| .|+++++.+.+.+...+..- .++.....++ .
T Consensus 698 ~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a--~tl~l~~~~l~~~~~ 775 (982)
T KOG2022|consen 698 QVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLA--VTLSLIAACLLAKST 775 (982)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHH--HHHHHHHHHHHhhhc
Confidence 244566665544433212233454544444433334444445 56777777777764333211 1111111111 1
Q ss_pred CCCCC-----chhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCCh--hhHHH-HHHHHhhhcCCCchhhH
Q 001062 630 SPLHI-----DLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGA--SAYEV-IIVELSTLISDSDLHMT 701 (1167)
Q Consensus 630 ~~~~~-----~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~--~~~~~-~l~~l~~~l~~~d~~~~ 701 (1167)
..... +|...+...+-...+.--.++.++...-+.++..+.+..++-... ..+.. ++.....++..+.+...
T Consensus 776 ~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i 855 (982)
T KOG2022|consen 776 VEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTI 855 (982)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHH
Confidence 11111 111112222111111111456677778888888888877653222 12333 44355667777777777
Q ss_pred HHHHHHHHHHhhc
Q 001062 702 ALALELCCTLMAD 714 (1167)
Q Consensus 702 ~~al~~l~~l~~~ 714 (1167)
.++-+++..+...
T Consensus 856 ~aa~qF~t~~~~~ 868 (982)
T KOG2022|consen 856 RAASQFLTALATY 868 (982)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887654
No 91
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.13 Score=60.61 Aligned_cols=345 Identities=16% Similarity=0.221 Sum_probs=194.0
Q ss_pred HHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcc
Q 001062 170 RLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPH 248 (1167)
Q Consensus 170 ~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~ 248 (1167)
+.++.|..-..+.. ..-|+.|+.+|..++.-+......+=|+.+++.++..-.+.+....++.++-.+..... .
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd---~-- 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD---S-- 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc---c--
Confidence 34444444444433 37899999999999988877776777888888887665555665555555544443321 0
Q ss_pred hhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccc
Q 001062 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEE 328 (1167)
Q Consensus 249 l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d 328 (1167)
|.++ + +..+.-+..+|.-+.|+.+ +..|.+++.++..+
T Consensus 97 -~~v~--------d---ds~qsdd~g~~iae~fik~---------qd~I~lll~~~e~~--------------------- 134 (970)
T KOG0946|consen 97 -PEVM--------D---DSTQSDDLGLWIAEQFIKN---------QDNITLLLQSLEEF--------------------- 134 (970)
T ss_pred -hhhc--------c---cchhhhHHHHHHHHHHHcC---------chhHHHHHHHHHhh---------------------
Confidence 0000 0 1112334466666666654 34556666665310
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHH---HHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCC
Q 001062 329 DESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKL---YEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVT 405 (1167)
Q Consensus 329 ~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~---~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~ 405 (1167)
.+.||+.|++++.+++.++|..+... ++.-+..++..+.|..|.+|.+++-.+.++++..+
T Consensus 135 -------------DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~--- 198 (970)
T KOG0946|consen 135 -------------DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS--- 198 (970)
T ss_pred -------------chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc---
Confidence 14899999999999999999655542 23334556677789999999999999999988643
Q ss_pred CCccCCCCCchHHHHHHH--HHHHHHHHHHHhccCC----hhhHHHHHHHHHHHHHhcCc---hh--HhhhhhhHHHHHH
Q 001062 406 KGQIDNNELNPRWLLKQE--VSKIVKSINRQLREKS----IKTKVGAFSVLRELVVVLPD---CL--ADHIGSLIPGIEK 474 (1167)
Q Consensus 406 ~~~~~~~~~~p~~~l~~~--~~~l~~~l~~~L~~~~----~~~r~~~~~~l~~l~~~~~~---~l--~~~l~~l~~~l~~ 474 (1167)
.+++. +..++..++..+.... --+...|+.++..|....-. .| ..|++.+...+-.
T Consensus 199 -------------~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 199 -------------SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence 33332 2445566666664432 13667888888887765422 12 2244444311111
Q ss_pred -hcccC-CCCc-hHH----HHHHHHHHHHhccCCC-Cchh---hhh--HhhHHHHHHHhcCC--chHHHHHHHHHHHHHH
Q 001062 475 -SLNDK-SSTS-NLK----IEALTFTRLVLSSHSP-PVFH---PYI--KALSSPVLAAVGER--YYKVTAEALRVCGELV 539 (1167)
Q Consensus 475 -~l~d~-~~~~-~~~----~~al~~l~~l~~~~~~-~~~~---~~l--~~ll~~l~~~l~d~--~~~v~~~al~~l~~l~ 539 (1167)
.+.|. ...+ .-| +.++..++.++.-..+ ..-+ ..+ ..++..++..+-.+ ..+|+.+++.++++++
T Consensus 266 f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevV 345 (970)
T KOG0946|consen 266 FEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVV 345 (970)
T ss_pred ccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHH
Confidence 01121 0011 122 4566667777652111 1111 111 24566666665433 5688999999999887
Q ss_pred HhccCCccccCCCCccchH----HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 001062 540 RVLRPSVEGLGFDFKPYVQ----PIYNAIMSRLTNQDQDQEVKECAISCMGLVIST 591 (1167)
Q Consensus 540 ~~~~~~~~~~~~~~~~~l~----~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~ 591 (1167)
+.-............|+.+ .|+-.++... +.......|.+.++|+-.+...
T Consensus 346 Rgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~-ne~q~~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 346 RGNARNQDEFADVTAPSIPNPRPSIVVLLMSMF-NEKQPFSLRCAVLYCFRSYLYD 400 (970)
T ss_pred HhchHHHHHHhhccCCCCCCCccchhHHHHHHH-hccCCchHHHHHHHHHHHHHhc
Confidence 6421100000011122222 2332222333 3334568899999999877643
No 92
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.82 E-value=0.00013 Score=73.98 Aligned_cols=134 Identities=23% Similarity=0.281 Sum_probs=103.6
Q ss_pred cchhhHHHHHhhhccccCcc---cchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChH
Q 001062 944 EGVRNVVAECLGKIALIEPA---KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRH 1020 (1167)
Q Consensus 944 e~vr~~aa~~Lg~l~~~~~~---~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~ 1020 (1167)
+.+|+.+..++|-|+...|. .++|.+...++++++.+|.+++..+.+++....-... ..++..++.++.|+|.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHcCCCHH
Confidence 46899999999999998874 7899999999999999999999999998886542222 23457888999999999
Q ss_pred HHHHHHHHHHHHHhc-CchhhhchhhhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHh
Q 001062 1021 VRRAAVLALSTFAHN-KPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLD 1093 (1167)
Q Consensus 1021 vr~~a~~~L~~~a~~-~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~ 1093 (1167)
||..|...+..+... .|..+..++++++-.+-...... .. -..+.+-|+..|..+...++
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~-~~------------~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHP-VY------------GPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccc-cc------------cccCHHHHHHHHHHHHHHcC
Confidence 999999999999888 88888777777665444322110 00 13566788888887766665
No 93
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.81 E-value=0.008 Score=69.43 Aligned_cols=255 Identities=15% Similarity=0.228 Sum_probs=149.6
Q ss_pred hhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccc
Q 001062 243 YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEA 322 (1167)
Q Consensus 243 ~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~ 322 (1167)
..+.|++..++..++..+... ...--|+..+++-.++..+.+.+.|+...+++.+...+.
T Consensus 18 ~di~p~~~~ll~~Lf~~i~~~---~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~----------------- 77 (435)
T PF03378_consen 18 ADIQPFAQQLLQNLFALIEKP---GSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILK----------------- 77 (435)
T ss_dssp GGTTCCHHHHHHHHHHHHHTT----STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHH-----------------
T ss_pred HHhhhhHHHHHHHHHHHHhcC---CCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 468899999999999998762 212234456666666777777777777766665543331
Q ss_pred cccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhC
Q 001062 323 YEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTG 402 (1167)
Q Consensus 323 ~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~ 402 (1167)
.+...| .++.--.-.|++++.+++...
T Consensus 78 ---------------------------------~v~kNP--------------------snP~FnHylFEsi~~lir~~~ 104 (435)
T PF03378_consen 78 ---------------------------------EVSKNP--------------------SNPRFNHYLFESIGALIRFVC 104 (435)
T ss_dssp ---------------------------------HHHTS-----------------------HHHHHHHHHHHHHHHHHS-
T ss_pred ---------------------------------HHHhCC--------------------CCcchhhhHHHHHHHHHHhcc
Confidence 011111 122223345666666666543
Q ss_pred CCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcC-chhHhhhhhhHHHHHHhcccCCC
Q 001062 403 NVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLP-DCLADHIGSLIPGIEKSLNDKSS 481 (1167)
Q Consensus 403 ~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~-~~l~~~l~~l~~~l~~~l~d~~~ 481 (1167)
.. .| ..+...-+.+++.+...|...-.+.---++++++.+.+..+ +.+.+.+..++|.+..----..
T Consensus 105 ~~----------~~-~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~- 172 (435)
T PF03378_consen 105 EA----------DP-EAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWER- 172 (435)
T ss_dssp GG----------GH-H---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGS-
T ss_pred CC----------Ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhcc-
Confidence 10 01 22334446666666777766544555578889999999887 6677777788887764332211
Q ss_pred CchHHHHHH-HHHHHHhccCCCCch-hhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHH
Q 001062 482 TSNLKIEAL-TFTRLVLSSHSPPVF-HPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP 559 (1167)
Q Consensus 482 ~~~~~~~al-~~l~~l~~~~~~~~~-~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~ 559 (1167)
.-.+-++ .++..+++..+.... ..++..++....+.+..+... .+|+..+..++.++.. ..+.+|++.
T Consensus 173 --~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~------~~l~~yl~~ 242 (435)
T PF03378_consen 173 --RGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPP------EALEPYLKQ 242 (435)
T ss_dssp --TTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-H------HHHGGGHHH
T ss_pred --CCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCH------HHHHHHHHH
Confidence 1123333 477777765432221 247788888888888766433 5689999999998754 247899999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 001062 560 IYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 593 (1167)
Q Consensus 560 l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g 593 (1167)
++..++.+++++.+ .+-+..-+..++.++...|
T Consensus 243 I~~lll~RLq~skT-~kf~~~fv~F~~~~~~~~g 275 (435)
T PF03378_consen 243 IFTLLLTRLQSSKT-EKFVKRFVVFLSLFAIKYG 275 (435)
T ss_dssp HHHHHHHHHHHC---HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHcC
Confidence 99999999986544 3444444555665555444
No 94
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0026 Score=72.73 Aligned_cols=289 Identities=19% Similarity=0.230 Sum_probs=163.4
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh---
Q 001062 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY--- 243 (1167)
Q Consensus 167 ~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~--- 243 (1167)
........+.....+.++.||+.|+.++=.++... ++-..+.....+.+.+.. ..+|..|++++......+|.
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~~~~Y~~A~~~lsD~~--e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KLSKACYSRAVKHLSDDY--EDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc--cccHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhcCCCccc
Confidence 33444555666666777899999999987777632 222233444455555543 47999999999888887742
Q ss_pred hhhc---chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccC---------C---
Q 001062 244 RFGP---HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYD---------P--- 308 (1167)
Q Consensus 244 ~~~p---~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~d---------p--- 308 (1167)
+... +.+..+-.+...+.+ -+-.+|-.|..+++.|-.... .++.+.+. .|.|..+ |
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~D---~sl~VRV~AaK~lG~~~~vSe----e~i~QTLd--KKlms~lRRkr~ahkrpk~l 341 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVRD---RSLSVRVEAAKALGEFEQVSE----EIIQQTLD--KKLMSRLRRKRTAHKRPKAL 341 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHhc---CceeeeehHHHHhchHHHhHH----HHHHHHHH--HHHhhhhhhhhhcccchHHH
Confidence 1221 234444455555555 455677777777776643321 12222211 1222211 1
Q ss_pred ----CCCCCCCCCCcccccccccchhhcCC-CC--------CCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHH
Q 001062 309 ----NFTDNMEEDSDDEAYEEEEEDESANE-YT--------DDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKL 375 (1167)
Q Consensus 309 ----~~~~~~~~d~~~~~~~~~~d~~~~~~-~~--------dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L 375 (1167)
.|..+-+..+|.-.+++++ +++.. -+ .-+|.-+.||+||+..+..+..+.|. +-...+-.|
T Consensus 342 ~s~GewSsGk~~~advpsee~d~--~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfL 415 (823)
T KOG2259|consen 342 YSSGEWSSGKEWNADVPSEEDDE--EEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFL 415 (823)
T ss_pred HhcCCcccCccccccCchhhccc--cccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHH
Confidence 1111111101100000000 00000 00 11344579999999999999999985 344556677
Q ss_pred HhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH
Q 001062 376 IDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVV 455 (1167)
Q Consensus 376 ~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~ 455 (1167)
+..|+|..+.||..++.++..+..+.. ++ .+.++.+.+.|.+.+.++|++.-.+|... .
T Consensus 416 vDMfNDE~~~VRL~ai~aL~~Is~~l~-----------------i~---eeql~~il~~L~D~s~dvRe~l~elL~~~-~ 474 (823)
T KOG2259|consen 416 VDMFNDEIEVVRLKAIFALTMISVHLA-----------------IR---EEQLRQILESLEDRSVDVREALRELLKNA-R 474 (823)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHhe-----------------ec---HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C
Confidence 888999999999999999998877632 11 33444556667788889998876655432 1
Q ss_pred hcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC
Q 001062 456 VLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1167)
Q Consensus 456 ~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1167)
. +. ..-+.-.+..+.+.|..- +.-+-+.+.+++.+-.+|+
T Consensus 475 ~-~d--~~~i~m~v~~lL~~L~ky---PqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 475 V-SD--LECIDMCVAHLLKNLGKY---PQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred C-Cc--HHHHHHHHHHHHHHhhhC---CCCcHHHHHHHHHHhccCh
Confidence 1 11 122555566666666532 1225566777777776664
No 95
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.076 Score=59.48 Aligned_cols=123 Identities=12% Similarity=0.088 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH-h
Q 001062 166 NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA-V 241 (1167)
Q Consensus 166 ~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~-~ 241 (1167)
+....++..+....++++..+|..|+.+|+..+...+++ ....++..++.++-++.. .++.-.++.++..+... .
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhh
Confidence 344556666777777888899999999999999998887 367789999999988764 56766677776666654 3
Q ss_pred hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccccc
Q 001062 242 GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSY 292 (1167)
Q Consensus 242 ~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~ 292 (1167)
...+.+|+-.+.--+.+...+ +++++|-+++..++.+...++...+.+
T Consensus 333 ~~~l~~~~l~ialrlR~l~~s---e~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 333 NDDLESYLLNIALRLRTLFDS---EDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred hcchhhhchhHHHHHHHHHHh---cChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 456888877777777777777 889999999999999999988765543
No 96
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.73 E-value=4.8e-05 Score=60.11 Aligned_cols=55 Identities=31% Similarity=0.382 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHH
Q 001062 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIEL 397 (1167)
Q Consensus 343 w~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l 397 (1167)
|.||++|+.+|+.+....++.+.++...++|.|+..++|.++.||..+..+++.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999888888888899999999999999999999999999888753
No 97
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.17 Score=65.61 Aligned_cols=142 Identities=18% Similarity=0.088 Sum_probs=88.0
Q ss_pred hHHHHHHHhccccc--CCChHHHHHHH-HHHHHhcCCCChhHHHHHHHHHHHhhhhcChh-hHHHHHHHHHHHhcCCCcc
Q 001062 24 ATSDLLNELNKESF--KADADLEVKLS-NIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP-RVVEMTDKLCIKLLNGKDQ 99 (1167)
Q Consensus 24 Al~dL~~~l~~~~~--~~~~~~~~~i~-~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~-~~~~l~~~L~~~~~~~~~~ 99 (1167)
|+....+++....+ .+++...+++. ..++..|..+++..|-.+.+.++.++..++.. .+..+....+..+.+..+.
T Consensus 851 al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~ 930 (2067)
T KOG1822|consen 851 ALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDP 930 (2067)
T ss_pred HHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCc
Confidence 44445555555444 56776666665 55557788999999999999999999877654 3456677777776654444
Q ss_pred -hhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHH
Q 001062 100 -HRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND 167 (1167)
Q Consensus 100 -~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~ 167 (1167)
.|.+-..|++.+-.....- ...+....-+..++...+|+. .+.|+.-++..+.-++...|+.+.-+
T Consensus 931 i~R~ghslalg~lhkyvgs~-~s~qhl~t~v~illal~~Ds~-~p~VqtwSL~al~~i~~s~~p~~~~~ 997 (2067)
T KOG1822|consen 931 ITRTGHSLALGCLHKYVGSI-GSGQHLNTSVSILLALATDST-SPVVQTWSLHALALILDSSGPMFRVL 997 (2067)
T ss_pred HHHHHHHHHHHHHHHhccCC-CCchhcccHHHHHHHHhhcCC-CchhhhhHHHHHHHHHcCCCceehhh
Confidence 4666677777665443321 011223333334555555543 56777777777776666666554433
No 98
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.055 Score=56.92 Aligned_cols=305 Identities=16% Similarity=0.206 Sum_probs=155.8
Q ss_pred HHHHH---HHHHHHHHHhhcC-HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh-hhhc----chhhhHHH
Q 001062 185 SVRKK---SVSCIASLASSLS-DDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY-RFGP----HLGDTVPV 255 (1167)
Q Consensus 185 ~vrk~---a~~~l~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~p----~l~~lvp~ 255 (1167)
.-|.+ .+.|+..+-.... -.+..++++.+..++..++. .++..++..++.+.+.|.. ..+. .-..+.|.
T Consensus 55 nhrekttlcVscLERLfkakegahlapnlmpdLQrGLiadda--sVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 55 NHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDA--SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred cccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcc--hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 44555 3444444443322 23567788888888877653 5677788888888876542 1111 12568888
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCC
Q 001062 256 LIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEY 335 (1167)
Q Consensus 256 l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~ 335 (1167)
++.++.. +|+++..+|.+.+..+... | .-+.. +. ..+..
T Consensus 133 ildcIgg---eddeVAkAAiesikrialf-p--------aalea----iF-eSell------------------------ 171 (524)
T KOG4413|consen 133 ILDCIGG---EDDEVAKAAIESIKRIALF-P--------AALEA----IF-ESELL------------------------ 171 (524)
T ss_pred HHHHHcC---CcHHHHHHHHHHHHHHHhc-H--------HHHHH----hc-ccccC------------------------
Confidence 9999888 8899999888888777542 1 11111 11 00000
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCc
Q 001062 336 TDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELN 415 (1167)
Q Consensus 336 ~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 415 (1167)
|| .+.|.-|++|-+ + +|..++..+.++....
T Consensus 172 ---Dd--lhlrnlaakcnd-i-----------------------------aRvRVleLIieifSiS-------------- 202 (524)
T KOG4413|consen 172 ---DD--LHLRNLAAKCND-I-----------------------------ARVRVLELIIEIFSIS-------------- 202 (524)
T ss_pred ---Ch--HHHhHHHhhhhh-H-----------------------------HHHHHHHHHHHHHhcC--------------
Confidence 01 266766666632 1 1222222222221110
Q ss_pred hHHHHHHHHHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHhcCc-hhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHH
Q 001062 416 PRWLLKQEVSKIVKSINRQLRE-KSIKTKVGAFSVLRELVVVLPD-CLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFT 493 (1167)
Q Consensus 416 p~~~l~~~~~~l~~~l~~~L~~-~~~~~r~~~~~~l~~l~~~~~~-~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l 493 (1167)
|...-.-.-..++..+..-++. ++.-++..|+.+..+|+++..+ .+-+ -..++..|+..+...++++.-+..++-.+
T Consensus 203 pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefla-QeglIdlicnIIsGadsdPfekfralmgf 281 (524)
T KOG4413|consen 203 PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLA-QEGLIDLICNIISGADSDPFEKFRALMGF 281 (524)
T ss_pred HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcc-hhhHHHHHHHHhhCCCCCcHHHHHHHHHH
Confidence 0000000113345555555655 4555788899999999886533 3311 13456666666665544455555556555
Q ss_pred HHHhccC-----CCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccc---CCCCccchHHHHHHHH
Q 001062 494 RLVLSSH-----SPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGL---GFDFKPYVQPIYNAIM 565 (1167)
Q Consensus 494 ~~l~~~~-----~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~---~~~~~~~l~~l~~~ll 565 (1167)
+.++... .++..-..+...+...+..+.-.++.....|+.++|.+-.. .++. -..-.|..+.++-
T Consensus 282 gkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn----teGadlllkTgppaaehlla--- 354 (524)
T KOG4413|consen 282 GKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN----TEGADLLLKTGPPAAEHLLA--- 354 (524)
T ss_pred HHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC----cchhHHHhccCChHHHHHHH---
Confidence 5555421 11222122222333333444445567778888888877432 1110 0011233444333
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHh
Q 001062 566 SRLTNQDQDQEVKECAISCMGLVIST 591 (1167)
Q Consensus 566 ~~l~~~d~~~~vr~~Ai~alg~l~~~ 591 (1167)
+...++... -.+.+++|+..+...
T Consensus 355 -rafdqnaha-kqeaaihaLaaIage 378 (524)
T KOG4413|consen 355 -RAFDQNAHA-KQEAAIHALAAIAGE 378 (524)
T ss_pred -HHhcccccc-hHHHHHHHHHHhhcc
Confidence 333222222 246778888877643
No 99
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.68 E-value=0.39 Score=64.49 Aligned_cols=275 Identities=10% Similarity=0.094 Sum_probs=152.2
Q ss_pred ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCc
Q 001062 380 KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD 459 (1167)
Q Consensus 380 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~ 459 (1167)
+.....||.-+++++..++...+ ..++.-|++++..+.....++++.....++..+..++..+-.
T Consensus 1193 ~s~~~eVrE~ILeCv~qmI~s~~---------------~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~ 1257 (1780)
T PLN03076 1193 KSNAVEIRELIIRCVSQMVLSRV---------------NNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP 1257 (1780)
T ss_pred hcCchHHHHHHHHHHHHHHHHHH---------------hhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh
Confidence 34567899999999999887654 356778899999888887777777777888888776653211
Q ss_pred hh----HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHH----hccC-------------------------------
Q 001062 460 CL----ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV----LSSH------------------------------- 500 (1167)
Q Consensus 460 ~l----~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l----~~~~------------------------------- 500 (1167)
.+ ...+..++..+...-+.+. +.++...|+.++..+ ++..
T Consensus 1258 ~l~~~~~~~F~DlV~cL~~Fa~q~~-~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 1336 (1780)
T PLN03076 1258 YITETETTTFTDCVNCLIAFTNSRF-NKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFT 1336 (1780)
T ss_pred hccccchhHHHHHHHHHHHHHhCcC-cccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccc
Confidence 11 1234444444443332221 244556666665533 1110
Q ss_pred CCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCcc-c----hHHHHHHHHHHhhcCCCCH
Q 001062 501 SPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKP-Y----VQPIYNAIMSRLTNQDQDQ 575 (1167)
Q Consensus 501 ~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~-~----l~~l~~~ll~~l~~~d~~~ 575 (1167)
..+....++=.++-.+.....|....||..|+.++=+++...|. .|.+ + +..++-.++..++.. .+.
T Consensus 1337 ~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~-------~Fs~~~W~~if~~VLFPIFd~l~~~-~~~ 1408 (1780)
T PLN03076 1337 DKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH-------LFSLPLWERVFESVLFPIFDYVRHA-IDP 1408 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc-------cCCHHHHHHHHHHHHHHHHHHHHHh-hcc
Confidence 00001123334455555556688899999999998887766554 3444 2 222222233332210 000
Q ss_pred HHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhh
Q 001062 576 EVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKAN 655 (1167)
Q Consensus 576 ~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~ 655 (1167)
...-..-|..+...-+. .-....+ .+|-..|++.+.++...-. ..+.+.++.++..|..++.++|
T Consensus 1409 ----------~~~~~~~~~~~~~~~~~--~e~~~Wl--~eT~~~AL~~lvdLft~fF-d~L~~~L~~~l~ll~~ci~q~n 1473 (1780)
T PLN03076 1409 ----------SGGDEPEGQGVDGDQGE--LDQDAWL--YETCTLALQLVVDLFVKFY-PTVNPLLKKVLMLLVSFIKRPH 1473 (1780)
T ss_pred ----------ccccccccccccccccc--hhhhhHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCch
Confidence 00000000000000000 0000000 0112223333333331100 1234567778888888888999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhc
Q 001062 656 RALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLI 693 (1167)
Q Consensus 656 ~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l 693 (1167)
..+-.....||..++...|..++.+.+..++..+..+.
T Consensus 1474 ~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1474 QSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998899888888888877665
No 100
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.64 E-value=0.0017 Score=65.74 Aligned_cols=111 Identities=19% Similarity=0.282 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHH
Q 001062 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1167)
Q Consensus 343 w~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~ 422 (1167)
+.||.-++.+++.+...+|..+ +..+|.+..+++|+++.||..++.++..++..- ..|
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--~ik---------------- 59 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILED--MIK---------------- 59 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--cee----------------
Confidence 5799999999999999998644 455677778899999999999999999987641 111
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHh-cCchhHhhhhhhHHHHHHh
Q 001062 423 EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVV-LPDCLADHIGSLIPGIEKS 475 (1167)
Q Consensus 423 ~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~-~~~~l~~~l~~l~~~l~~~ 475 (1167)
.-+.++..+...+.|+++.+|..|-.+|.++... .|..+..++++++..+...
T Consensus 60 ~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 60 VKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 1144556667778999999999999999999887 5666655666555544443
No 101
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0084 Score=70.93 Aligned_cols=214 Identities=16% Similarity=0.238 Sum_probs=149.2
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChh---hHHHHHHHHHHHhcCCCcchhcHHHHHHH---HHHhhcCCch
Q 001062 46 KLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP---RVVEMTDKLCIKLLNGKDQHRDIASIALK---TIIAEVTTSS 119 (1167)
Q Consensus 46 ~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~---~~~~l~~~L~~~~~~~~~~~r~~a~~aL~---~~~~~~~~~~ 119 (1167)
..++..+..+.||-.-+|..|...+..++++=... ....++......+.+.++ -+...|++ .+|+-.|
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds---yvyLnaI~gv~~Lcevy~--- 800 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS---YVYLNAIRGVVSLCEVYP--- 800 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc---eeeHHHHHHHHHHHHhcc---
Confidence 44677888899999999999999999998732221 234555556666655543 24444555 4555444
Q ss_pred hHHHHHHHHHHHHHH-hhhccC-CChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHH
Q 001062 120 LAQSIHTSLTPQLTK-GITLKD-MNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASL 197 (1167)
Q Consensus 120 ~~~~~~~~i~p~Ll~-~l~~~~-~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l 197 (1167)
+.++|.+.. ..+.++ ...+.|...=+++..++...|+.+..|...+...++....+|+...|-.++..+|.+
T Consensus 801 ------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 801 ------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred ------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 357777765 222221 113344444499999999999999999999999999999988888999999999999
Q ss_pred HhhcC---HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch----hhhHHHHHHHhhhcCCCChhH
Q 001062 198 ASSLS---DDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL----GDTVPVLIDYCTSASENDEEL 270 (1167)
Q Consensus 198 ~~~~~---~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l----~~lvp~l~~~l~~~~e~~~e~ 270 (1167)
+.... .+.|.+++..++...+... ...+||.|++.+..+.++.|..+-|.+ -.....+.++...+ +++.+
T Consensus 875 cq~~a~~vsd~~~ev~~~Il~l~~~d~-s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~--~dd~~ 951 (982)
T KOG4653|consen 875 CQLLAFQVSDFFHEVLQLILSLETTDG-SVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQH--DDDGL 951 (982)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHccCC-chhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcC--chhHH
Confidence 87654 4477888888887766543 468999999999999999888777743 34444445544442 44445
Q ss_pred HHHH
Q 001062 271 REYS 274 (1167)
Q Consensus 271 re~a 274 (1167)
|-.+
T Consensus 952 klha 955 (982)
T KOG4653|consen 952 KLHA 955 (982)
T ss_pred HHHH
Confidence 4433
No 102
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.067 Score=62.61 Aligned_cols=313 Identities=16% Similarity=0.176 Sum_probs=168.5
Q ss_pred HHHHHHHHHH-hccCChhhHHHHHHHHHHHHHhc-C-chhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC
Q 001062 425 SKIVKSINRQ-LREKSIKTKVGAFSVLRELVVVL-P-DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1167)
Q Consensus 425 ~~l~~~l~~~-L~~~~~~~r~~~~~~l~~l~~~~-~-~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1167)
|.++-.+.+. |-..+-..+ -.+..+.+++-.. + +.+-..+--+...+.+=|+.+ +..+|-.++.|++.+=+
T Consensus 55 p~Llm~IiRfvlps~~~elK-KLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHP--NEyiRG~TLRFLckLkE--- 128 (948)
T KOG1058|consen 55 PSLLMTIIRFVLPSRNHELK-KLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHP--NEYIRGSTLRFLCKLKE--- 128 (948)
T ss_pred hHHHHHHhheeeccCchHHH-HHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCc--hHhhcchhhhhhhhcCc---
Confidence 5555444444 333332222 3344555655433 2 233222333334444444444 56889999999887633
Q ss_pred CCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHH
Q 001062 502 PPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECA 581 (1167)
Q Consensus 502 ~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~A 581 (1167)
...+++++|.+..|++.++.-||..|+.++..+.+... .+.|-.+.++...+.. +.|+.-+.+|
T Consensus 129 ----~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~--------~L~pDapeLi~~fL~~----e~DpsCkRNA 192 (948)
T KOG1058|consen 129 ----PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--------HLIPDAPELIESFLLT----EQDPSCKRNA 192 (948)
T ss_pred ----HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--------hhcCChHHHHHHHHHh----ccCchhHHHH
Confidence 23568899999999999999999999999999887622 3455666666654432 4455555555
Q ss_pred HHHH------------HHHHHhcCcccccchhhhHHHHHH--hhcCchhh------------------------------
Q 001062 582 ISCM------------GLVISTFGDNLGAELPACLPVLVD--RMGNEITR------------------------------ 617 (1167)
Q Consensus 582 i~al------------g~l~~~~g~~l~~~~~~~l~~L~~--~L~~e~~r------------------------------ 617 (1167)
+..+ +..+...+ .+.+.++.++-.+.. ++++...+
T Consensus 193 Fi~L~~~D~ErAl~Yl~~~idqi~-~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS 271 (948)
T KOG1058|consen 193 FLMLFTTDPERALNYLLSNIDQIP-SFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS 271 (948)
T ss_pred HHHHHhcCHHHHHHHHHhhHhhcc-CccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc
Confidence 4433 33332222 111222221111111 11111111
Q ss_pred ------HHHHHHHHHHhcC-CC-CC---c----------hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCC
Q 001062 618 ------LTAVKAFAVIAAS-PL-HI---D----------LTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK 676 (1167)
Q Consensus 618 ------~~a~~al~~i~~~-~~-~~---~----------~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~ 676 (1167)
..|..++-.++.. +. .. . -...+..++-.+..+|..+|-.+|..++...-.|+.+.
T Consensus 272 ~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr--- 348 (948)
T KOG1058|consen 272 NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR--- 348 (948)
T ss_pred CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc---
Confidence 1222222222211 00 00 0 02334444444556666788888888888777776532
Q ss_pred CChhhHHHHHHHHhhhc-------CCCchhhHHHHHHHHHHHhhcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHH
Q 001062 677 IGASAYEVIIVELSTLI-------SDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVA 749 (1167)
Q Consensus 677 ~~~~~~~~~l~~l~~~l-------~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~ 749 (1167)
.+++++.-+..-+ .+.+..-|+..+..+....-. +|+ +...++|.++..+.+. +..+-..
T Consensus 349 ----Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~---Fp~----~aatvV~~ll~fisD~--N~~aas~ 415 (948)
T KOG1058|consen 349 ----NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK---FPE----VAATVVSLLLDFISDS--NEAAASD 415 (948)
T ss_pred ----cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc---ChH----HHHHHHHHHHHHhccC--CHHHHHH
Confidence 3555555544322 112334578888888887776 776 6677888888877543 3333345
Q ss_pred HHHHHHHHHhccCCChHHHHHHHhhcC
Q 001062 750 LQSFFAALVYSANTSFDTLLDSLLSSA 776 (1167)
Q Consensus 750 ~~~~~~~l~~~~~~~~~~ll~~L~~~~ 776 (1167)
.+.|++...+..|..-..+++.++...
T Consensus 416 vl~FvrE~iek~p~Lr~~ii~~l~~~~ 442 (948)
T KOG1058|consen 416 VLMFVREAIEKFPNLRASIIEKLLETF 442 (948)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhh
Confidence 677887777766543344555555443
No 103
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.044 Score=64.42 Aligned_cols=211 Identities=18% Similarity=0.190 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHhcCC-CcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHH
Q 001062 81 RVVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1167)
Q Consensus 81 ~~~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~ 159 (1167)
...+.+++||..+.+. -.+.|.-|+.|||++...... .+...-++.|++.|+....+++.-..++|++.-+..+
T Consensus 19 s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~-----~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~ 93 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYRE-----EVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH 93 (970)
T ss_pred cHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHH-----HHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 4567788888887653 346688999999987764433 2333334555555554434667777777777666544
Q ss_pred h---------------ccchhH---HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHH------HHHHHHH
Q 001062 160 F---------------GNLMSN---DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAK------ATIEVVR 215 (1167)
Q Consensus 160 ~---------------g~~l~~---~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~------l~~~l~~ 215 (1167)
- |..+.. ..+..+..++..+...+-.||..|++.++.+..+.+.+.-+. =+..++.
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 2 222221 123456777888877778999999999999999999885332 3455666
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHhhh--hhhcchhhhHHHHHHHhhhcCCCC-hhHHHHHHHHHHHHHHhCCcc---c
Q 001062 216 NLRSKGAKPEMIRTNIQMVGALSRAVGY--RFGPHLGDTVPVLIDYCTSASEND-EELREYSLQALESFLLRCPRD---I 289 (1167)
Q Consensus 216 ~l~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~p~l~~lvp~l~~~l~~~~e~~-~e~re~al~~l~~l~~~~~~~---~ 289 (1167)
.+.+..+ ..|..++.++..+.+.++. ++..| ..++.-+++.+...+.-| .-+-+.|+..+.++..+--.. |
T Consensus 174 lL~DsrE--~IRNe~iLlL~eL~k~n~~IQKlVAF-ENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F 250 (970)
T KOG0946|consen 174 LLRDSRE--PIRNEAILLLSELVKDNSSIQKLVAF-ENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF 250 (970)
T ss_pred HHhhhhh--hhchhHHHHHHHHHccCchHHHHHHH-HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence 6666543 6888999999999998764 33332 566777777776532122 246788999999888764322 3
Q ss_pred c--ccHHHHHHH
Q 001062 290 S--SYCDEILHL 299 (1167)
Q Consensus 290 ~--~~l~~ii~~ 299 (1167)
+ .|++.+..+
T Consensus 251 rE~~~i~rL~kl 262 (970)
T KOG0946|consen 251 REGSYIPRLLKL 262 (970)
T ss_pred hccccHHHHHhh
Confidence 3 466555443
No 104
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.58 E-value=0.0095 Score=65.82 Aligned_cols=195 Identities=13% Similarity=0.161 Sum_probs=131.2
Q ss_pred hhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHh
Q 001062 377 DRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVV 456 (1167)
Q Consensus 377 ~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~ 456 (1167)
..+.++....|.+++..+..++.+... ...+.....+|+..+.+.++..+.+-+..++.++.-++-.
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~-------------~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~lt 116 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYL-------------PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALT 116 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Confidence 345577788999999998888765321 1456777889999999999876655556677778777777
Q ss_pred cC--chhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHH--hccCCCCchhhhhHhhHHHHHHH--hc-C-------
Q 001062 457 LP--DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLV--LSSHSPPVFHPYIKALSSPVLAA--VG-E------- 522 (1167)
Q Consensus 457 ~~--~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l--~~~~~~~~~~~~l~~ll~~l~~~--l~-d------- 522 (1167)
++ ..-...+..+.|.+.+.+.|.......|..++.+|+.+ +...+++....- -..+..+... .+ +
T Consensus 117 lg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~-~~~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 117 LGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL-MESLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH-HHHHHHHHHHHhcCcCCCccccc
Confidence 55 44456788999999999998755556777777666654 333333333210 1223322221 11 1
Q ss_pred --CchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 001062 523 --RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 593 (1167)
Q Consensus 523 --~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g 593 (1167)
+...+...|+.+++-++..+.+ ..+..+++..+|.+...|. ..+.+||-.|-.+++-+.+...
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~------~~~~~~~~~~~~~l~~lL~--s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPD------SKLEDLLEEALPALSELLD--SDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhh
Confidence 1357899999999998866543 1244567777888888776 3478999999999998876654
No 105
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.00032 Score=73.35 Aligned_cols=231 Identities=13% Similarity=0.111 Sum_probs=146.4
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhhhhc---ChhhHH-HHHHHHHHHhcCCCcc--hhcHHHHHHHHHHhhcCCchh
Q 001062 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKV---SEPRVV-EMTDKLCIKLLNGKDQ--HRDIASIALKTIIAEVTTSSL 120 (1167)
Q Consensus 47 i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~---~~~~~~-~l~~~L~~~~~~~~~~--~r~~a~~aL~~~~~~~~~~~~ 120 (1167)
-++.++++|.|++.+||.+|+=.||.++..- .+..+. ..++.|+..+.+...+ .-.-+.-.|.++|.+-.+..-
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~ 237 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD 237 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence 4788899999999999999999999988532 221111 2244444444443332 122345567777766544212
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 001062 121 AQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND-HERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1167)
Q Consensus 121 ~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~-~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1167)
+ ..+...+|.|.+.+... ++++-.+|+-+++-+..---+..... --.+.+.|++.|++++..++.-|++.+|.++.
T Consensus 238 w-~~isqalpiL~KLiys~--D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 238 W-SNISQALPILAKLIYSR--DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred h-HHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence 2 23456677777766654 58899999998887654322111111 11234567888888888999999999998876
Q ss_pred hcCHH---HHH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHH
Q 001062 200 SLSDD---LLA-KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYS 274 (1167)
Q Consensus 200 ~~~~~---~~~-~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~a 274 (1167)
..... +++ -.++.+-..+.++.. ..|+.++-+++.|-......+...+ ..++|.++..+.. .+--+|..|
T Consensus 315 G~D~QTqviI~~G~L~a~~~lLs~~ke--~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~---ae~k~kKEA 389 (526)
T COG5064 315 GSDDQTQVIINCGALKAFRSLLSSPKE--NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS---AEYKIKKEA 389 (526)
T ss_pred cCccceehheecccHHHHHHHhcChhh--hhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH---HHHHHHHHH
Confidence 54443 111 123333334555543 6889999998888654433333322 4588999998887 566788888
Q ss_pred HHHHHHHHHhC
Q 001062 275 LQALESFLLRC 285 (1167)
Q Consensus 275 l~~l~~l~~~~ 285 (1167)
.|++.+....+
T Consensus 390 CWAisNatsgg 400 (526)
T COG5064 390 CWAISNATSGG 400 (526)
T ss_pred HHHHHhhhccc
Confidence 89888776554
No 106
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=97.56 E-value=0.38 Score=58.13 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=83.5
Q ss_pred CChhHHhHhHHHHHHHhcccccC-------CChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHH
Q 001062 16 KDKDFRYMATSDLLNELNKESFK-------ADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDK 88 (1167)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~~~~~-------~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~ 88 (1167)
.|=-+|..|+=-+++++.+.|-. .+++. -|-+.++.++-..++..+-+-..|++.+++.--++.|+.+++.
T Consensus 50 ~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v--~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~D 127 (947)
T COG5657 50 NSMSLRWAALIQFKNYIDKHWREENGNSILPDENV--LIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPD 127 (947)
T ss_pred cchhHHHHHHHHHHhhHHHHhhhhcccCCCCccch--HHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHH
Confidence 34567999999999999875522 23322 6678888888888887777888999999998888899999999
Q ss_pred HHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 001062 89 LCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLT 133 (1167)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll 133 (1167)
|+..+++++.........++..+++.+.+....++.+-.+.|.|.
T Consensus 128 L~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd~lf~ei~p~L~ 172 (947)
T COG5657 128 LLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSDALFLEIAPVLL 172 (947)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 999998865555666777777777766543222334444444443
No 107
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.54 E-value=0.15 Score=59.03 Aligned_cols=216 Identities=13% Similarity=0.138 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHH
Q 001062 81 RVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS--SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLH 158 (1167)
Q Consensus 81 ~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~--~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~ 158 (1167)
....++..|+..+..+.....+.-+-++-.++.-.... +....+++.+...+......+. ++..-+..++.++.+++
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPs-nP~FnHylFEsi~~lir 101 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPS-NPRFNHYLFESIGALIR 101 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchhhhHHHHHHHHHH
Confidence 35677888888776544444555555555555444432 2344445555444433333343 68889999999999999
Q ss_pred Hhccc----hhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH----HHHHHHHHHHHHh-hcCCCChHHHHH
Q 001062 159 KFGNL----MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD----LLAKATIEVVRNL-RSKGAKPEMIRT 229 (1167)
Q Consensus 159 ~~g~~----l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~----~~~~l~~~l~~~l-~~~~~~~~~r~~ 229 (1167)
..... +....+.++|.+...|+++-...---+.+.++.+....+.. .+.++++.++... .+... ..-.
T Consensus 102 ~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~g---niPa 178 (435)
T PF03378_consen 102 FVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRG---NIPA 178 (435)
T ss_dssp HS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTT---THHH
T ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCC---CcCc
Confidence 75542 33567788888888887775566667788888888877622 2445555554321 11111 2234
Q ss_pred HHHHHHHHHHHhhhhhh--cchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcc-ccccHHHHHHHHHHhhc
Q 001062 230 NIQMVGALSRAVGYRFG--PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD-ISSYCDEILHLTLEYLS 305 (1167)
Q Consensus 230 ~~~~l~~l~~~~~~~~~--p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~-~~~~l~~ii~~~~~~l~ 305 (1167)
.+..+.++.+..|..+. +++..++..+-..+... ..| ..++..++.++.++|.+ +.||++.++.++++.++
T Consensus 179 lvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk---~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq 252 (435)
T PF03378_consen 179 LVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK---AND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQ 252 (435)
T ss_dssp HHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T---TCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC---Ccc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 55677777888887764 67888888877777662 222 35899999999999985 79999999999998886
No 108
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.35 Score=56.85 Aligned_cols=193 Identities=13% Similarity=0.099 Sum_probs=110.1
Q ss_pred HHHHHHhcCchhHhhhhhhHHHHHH--------hcccC---C-CCchHHHHHHHHHHHH---hccC--CCCchhhhhHhh
Q 001062 450 LRELVVVLPDCLADHIGSLIPGIEK--------SLNDK---S-STSNLKIEALTFTRLV---LSSH--SPPVFHPYIKAL 512 (1167)
Q Consensus 450 l~~l~~~~~~~l~~~l~~l~~~l~~--------~l~d~---~-~~~~~~~~al~~l~~l---~~~~--~~~~~~~~l~~l 512 (1167)
+.++++.+++.++|+-++++..+.+ .+... . ...+-.+.|..+++.+ +-+. .+..++.....+
T Consensus 563 Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl 642 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL 642 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4556666666677776666665554 11111 1 1113345565655543 3222 222233233456
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 001062 513 SSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTF 592 (1167)
Q Consensus 513 l~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~ 592 (1167)
.|.+.--+.+.-..+-.+|+..+.......+ +..|....+++.+.+.+...++ ..--+.+.-++..++...
T Consensus 643 ypvi~Filkn~i~dfy~Ea~dildg~tf~sk--------eI~pimwgi~Ell~~~l~~~~t-~~y~ee~~~al~nfityG 713 (970)
T COG5656 643 YPVISFILKNEISDFYQEALDILDGYTFMSK--------EIEPIMWGIFELLLNLLIDEIT-AVYSEEVADALDNFITYG 713 (970)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhHHHH--------HhhhhhhHHHHHHHhcccccch-hhhHHHHHHHHHHHHHhC
Confidence 6666555666656777888888877654332 2456777777777766654332 233456677888888887
Q ss_pred Cccccc---chhhhHHHHHHhhcCch----hhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHH
Q 001062 593 GDNLGA---ELPACLPVLVDRMGNEI----TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFL 651 (1167)
Q Consensus 593 g~~l~~---~~~~~l~~L~~~L~~e~----~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L 651 (1167)
+..+.. |...++.++..++.+|. .+..+++.+..++.+-...-+.+|++-.+......+
T Consensus 714 ~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l 779 (970)
T COG5656 714 KTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGL 779 (970)
T ss_pred ccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhh
Confidence 766653 66777888888887775 366778887777644322123455554444333333
No 109
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.072 Score=68.30 Aligned_cols=344 Identities=16% Similarity=0.153 Sum_probs=183.9
Q ss_pred CChHHHHHHHHHHH--HhcCCCChhHHHHHHHHHHHhhhhcChh------hHHHHHHHHHHHhc---CCCcc--hhcHHH
Q 001062 39 ADADLEVKLSNIVV--QQLDDVAGDVSGLAVKCLAPLVKKVSEP------RVVEMTDKLCIKLL---NGKDQ--HRDIAS 105 (1167)
Q Consensus 39 ~~~~~~~~i~~~ll--~~L~d~~~~Vr~~A~~~l~~l~~~~~~~------~~~~l~~~L~~~~~---~~~~~--~r~~a~ 105 (1167)
.+......+...|+ ..|..++.+||-...-|+..+.+.+.++ ++..+..-++..+. +..+. .|. .
T Consensus 41 ~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~--~ 118 (1266)
T KOG1525|consen 41 LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRY--F 118 (1266)
T ss_pred hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhH--H
Confidence 45566677777777 3578999999999999999998876543 34444444443332 22111 111 1
Q ss_pred HHHHH-----HH--hhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhh
Q 001062 106 IALKT-----II--AEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQ 178 (1167)
Q Consensus 106 ~aL~~-----~~--~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~ 178 (1167)
.-|.+ +| -..+. .+..+..+...++..+.++ .+.--...+++++.++...-. ....++..++..
T Consensus 119 ~lletl~~~k~~l~~~l~d---~~e~~~~~f~~f~d~~~~~--~~~~v~~~~~i~~~li~e~d~----v~~e~L~~ll~~ 189 (1266)
T KOG1525|consen 119 YLLETLAKVKFCLLMLLED---CQELVHELFRTFFDLARKG--HPKKVFNMLDIAIMLITEEDT----VQSELLDVLLEN 189 (1266)
T ss_pred HHHHHHHHhHHHheeeccc---hHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHhhcc----chHHHHHHHHHH
Confidence 11111 11 11111 1112222333333333222 122222256666666655443 345666666666
Q ss_pred hcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHH
Q 001062 179 LSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG-AKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLI 257 (1167)
Q Consensus 179 l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~ 257 (1167)
|-.+....++.|...-..++..+++.+.+.+-..+...+.... .....+..+...+-.+-+..|.- +-.++|.+.
T Consensus 190 lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~l----l~~vip~l~ 265 (1266)
T KOG1525|consen 190 LVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQL----LLAVIPQLE 265 (1266)
T ss_pred hccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHH----HHHHHHHHH
Confidence 6666555555555555555555555443333333333332111 11234555666666666665544 457889998
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCC
Q 001062 258 DYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTD 337 (1167)
Q Consensus 258 ~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~d 337 (1167)
.-+.. +++++|-.|...++.+.......+..-.+.+....+.-+
T Consensus 266 ~eL~s---e~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~--------------------------------- 309 (1266)
T KOG1525|consen 266 FELLS---EQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRF--------------------------------- 309 (1266)
T ss_pred HHHhc---chHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHh---------------------------------
Confidence 88888 788999999888887765432222111111111111111
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchH
Q 001062 338 DEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1167)
Q Consensus 338 ddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~ 417 (1167)
-|-+-.||.+..++...++.+.|+... ...-.+.-+..+.++.+|.....++..+ .. .
T Consensus 310 -~D~~~~vR~~~v~~~~~~l~~~~~~~~----~~~~~~~l~~~~~D~~~rir~~v~i~~~-~v----------------~ 367 (1266)
T KOG1525|consen 310 -NDISVEVRMECVESIKQCLLNNPSIAK----ASTILLALRERDLDEDVRVRTQVVIVAC-DV----------------M 367 (1266)
T ss_pred -ccCChhhhhhHHHHhHHHHhcCchhhh----HHHHHHHHHhhcCChhhhheeeEEEEEe-eh----------------h
Confidence 012237899999999888888874322 1111122233444555553321111100 00 0
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH
Q 001062 418 WLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVV 455 (1167)
Q Consensus 418 ~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~ 455 (1167)
..--.+.|.+++.+...+.++.++||..|+.-|..+-.
T Consensus 368 ~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 368 KFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 01123456699999999999999999999998888766
No 110
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.50 E-value=0.014 Score=62.71 Aligned_cols=236 Identities=11% Similarity=0.149 Sum_probs=142.0
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhhhhcCh-----hhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHH
Q 001062 51 VVQQLDDVAGDVSGLAVKCLAPLVKKVSE-----PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH 125 (1167)
Q Consensus 51 ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~-----~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~ 125 (1167)
+=..|.|+++.+|..|..+|+.+...++. .++..+++.++..+.+.. . -..+..|+..++ ++.. +.....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~-~~~~l~gl~~L~-~~~~--~~~~~~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-C-VQPALKGLLALV-KMKN--FSPESA 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-h-HHHHHHHHHHHH-hCcC--CChhhH
Confidence 33578899999999999999999877764 456667777777774321 2 223366676666 2222 112223
Q ss_pred HHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHH
Q 001062 126 TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDD 204 (1167)
Q Consensus 126 ~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~ 204 (1167)
..++..+++...-+.-....|..++.++..+++++...+....+..+..+++.+..++ |.-=.-+...+..+....+-
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~- 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI- 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-
Confidence 3344444432222222356899999999999999887776666777888777776533 32223344445555544432
Q ss_pred HHHHHHHHHHHHh--------hcCCCCh--HHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHH
Q 001062 205 LLAKATIEVVRNL--------RSKGAKP--EMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYS 274 (1167)
Q Consensus 205 ~~~~l~~~l~~~l--------~~~~~~~--~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~a 274 (1167)
.+..+.+...+ +.+..+. =.++..-..+-.... +...|+ +..+|.+++-+.. +...++..+
T Consensus 158 --~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa---~~~~p~LleKL~s---~~~~~K~D~ 228 (262)
T PF14500_consen 158 --SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFA---PFAFPLLLEKLDS---TSPSVKLDS 228 (262)
T ss_pred --chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhH---HHHHHHHHHHHcC---CCcHHHHHH
Confidence 33333343332 2222111 011111111111111 223455 5589999999988 777899999
Q ss_pred HHHHHHHHHhCCcc-ccccHHHHHHHHH
Q 001062 275 LQALESFLLRCPRD-ISSYCDEILHLTL 301 (1167)
Q Consensus 275 l~~l~~l~~~~~~~-~~~~l~~ii~~~~ 301 (1167)
++++...+..++.. +.||+.++-..+.
T Consensus 229 L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 229 LQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999988888754 7788888877664
No 111
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.47 E-value=0.077 Score=56.96 Aligned_cols=239 Identities=19% Similarity=0.262 Sum_probs=151.6
Q ss_pred ChhHHHHHHHHHHHHHHHhccc-hh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHh
Q 001062 142 NTEIRCECLDILCDVLHKFGNL-MS-NDHERLLSALLPQLSANQASVRKKSVSCIASLAS--SLSDDLLAKATIEVVRNL 217 (1167)
Q Consensus 142 ~~~v~~~~~~~L~~l~~~~g~~-l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~--~~~~~~~~~l~~~l~~~l 217 (1167)
++.+|..++.+|+.++...... ++ .....++..+...+.+. ..++.. +.++..+.. ..+.+....++..+.+..
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKMKNFSPESAVKILRSLFQNV 89 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhCcCCChhhHHHHHHHHHHhC
Confidence 6889999999999999999864 43 67778888888888543 344443 777777763 345555666676666654
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHH
Q 001062 218 RSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEIL 297 (1167)
Q Consensus 218 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii 297 (1167)
.-+......|..+++.+..+.......+...=+..+..+++.+.. |.||.=--.+++.+..++...+ +.++.++++
T Consensus 90 ~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g--EkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lF 165 (262)
T PF14500_consen 90 DVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG--EKDPRNLLLSFKLLKVILQEFD--ISEFAEDLF 165 (262)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhcc--cchhHHHHH
Confidence 333223467888999999998875554433334555555655543 4677644456666777777665 477888888
Q ss_pred HHHHHhh--ccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHH
Q 001062 298 HLTLEYL--SYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKL 375 (1167)
Q Consensus 298 ~~~~~~l--~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L 375 (1167)
+++.-|. .+.|.-++ . ... +.-.+++ +|...+.+.| .+-+..+|.|
T Consensus 166 d~~~cYFPI~F~pp~~d--p---~~I-------------------T~edLk~----~L~~cl~s~~----~fa~~~~p~L 213 (262)
T PF14500_consen 166 DVFSCYFPITFRPPPND--P---YGI-------------------TREDLKR----ALRNCLSSTP----LFAPFAFPLL 213 (262)
T ss_pred HHhhheeeeeeeCCCCC--C---CCC-------------------CHHHHHH----HHHHHhcCcH----hhHHHHHHHH
Confidence 8775442 22222100 0 000 0001222 2333333333 2446688999
Q ss_pred HhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHH
Q 001062 376 IDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSIN 432 (1167)
Q Consensus 376 ~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~ 432 (1167)
++++......++.++++++..++..-+. ..+.+++.+|...+.
T Consensus 214 leKL~s~~~~~K~D~L~tL~~c~~~y~~--------------~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 214 LEKLDSTSPSVKLDSLQTLKACIENYGA--------------DSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHCCH--------------HHHHHHHHHHHHHHH
Confidence 9999888899999999999999886652 345667666665554
No 112
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.46 E-value=0.038 Score=62.83 Aligned_cols=186 Identities=19% Similarity=0.207 Sum_probs=117.3
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
.+..+++-..++|+.+|.-|...|.. ......++.+...+.|+++.||..|+.++|.+-. +.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~-----------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------~~ 105 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGE-----------LGSEEAVPLLRELLSDEDPRVRDAAADALGELGD-------PE 105 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhh-----------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------hh
Confidence 45667777788888888888877532 3456788999999999999999999998886531 23
Q ss_pred HHHHHHHHhc-CCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccC----------CChhHHHHHHHHH
Q 001062 85 MTDKLCIKLL-NGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD----------MNTEIRCECLDIL 153 (1167)
Q Consensus 85 l~~~L~~~~~-~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~----------~~~~v~~~~~~~L 153 (1167)
-++.|...+. +.+..+|..+..+|..+-... -++.++..+++.. ..+.+|..+...+
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~------------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l 173 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER------------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEAL 173 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh------------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHH
Confidence 3444444444 577778999999888643211 1233344444321 1123555555555
Q ss_pred HHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 001062 154 CDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQM 233 (1167)
Q Consensus 154 ~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~ 233 (1167)
+.+ ..+...+.+...+.++...||..|..+++.+.... ..+.+.+...+.++++ .+|..++.+
T Consensus 174 ~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~--~vr~~~~~~ 236 (335)
T COG1413 174 GEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESL--EVRKAALLA 236 (335)
T ss_pred HHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCH--HHHHHHHHH
Confidence 433 12334445566666776788888888888887654 1233445555555544 677666666
Q ss_pred HHHH
Q 001062 234 VGAL 237 (1167)
Q Consensus 234 l~~l 237 (1167)
+|.+
T Consensus 237 l~~~ 240 (335)
T COG1413 237 LGEI 240 (335)
T ss_pred hccc
Confidence 6544
No 113
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.012 Score=67.42 Aligned_cols=302 Identities=17% Similarity=0.160 Sum_probs=181.8
Q ss_pred HHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC-CCc----h
Q 001062 431 INRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS-PPV----F 505 (1167)
Q Consensus 431 l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~-~~~----~ 505 (1167)
+.....+.+.++|..|+..+-+|-+. -.+ -..+.....+.+.|. ...+|.+|+.++...-.-+. +.. -
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL---~~~~Y~~A~~~lsD~--~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEG--FKL---SKACYSRAVKHLSDD--YEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccc--ccc---cHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 55556677888998888887777552 222 334456677788876 46899999888776655441 111 1
Q ss_pred hhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHH-HHHHHhhcCCCCHHHHHHHHHH
Q 001062 506 HPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYN-AIMSRLTNQDQDQEVKECAISC 584 (1167)
Q Consensus 506 ~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~-~ll~~l~~~d~~~~vr~~Ai~a 584 (1167)
....+..+..++..+.|....||.+|..++|.+-.+- ..++.+.+. -++.++.++-. ..-|.++.+.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-----------ee~i~QTLdKKlms~lRRkr~-ahkrpk~l~s 343 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-----------EEIIQQTLDKKLMSRLRRKRT-AHKRPKALYS 343 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-----------HHHHHHHHHHHHhhhhhhhhh-cccchHHHHh
Confidence 2345666777888889999999999999999885431 123333332 22222222111 1223344444
Q ss_pred HHHHHHhcCcccccchh---------hh-----HHHHHHhhcCc--hhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q 001062 585 MGLVISTFGDNLGAELP---------AC-----LPVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELT 648 (1167)
Q Consensus 585 lg~l~~~~g~~l~~~~~---------~~-----l~~L~~~L~~e--~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~ 648 (1167)
=|.+.+ |.......+ .+ =..++..|.+| ++|.+|+..++.++.+. ..+....+.-|.
T Consensus 344 ~GewSs--Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-----P~FA~~aldfLv 416 (823)
T KOG2259|consen 344 SGEWSS--GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-----PGFAVRALDFLV 416 (823)
T ss_pred cCCccc--CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-----CCcHHHHHHHHH
Confidence 443321 111111111 01 12333345555 47999999999999653 335567778888
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCchhhhhhhc
Q 001062 649 AFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNK 728 (1167)
Q Consensus 649 ~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~ 728 (1167)
+.+.++.+.+|..|+.+|..|+.+.. +. ++.++.++..+.+....+++..-++|+..= .+. ......
T Consensus 417 DMfNDE~~~VRL~ai~aL~~Is~~l~--i~----eeql~~il~~L~D~s~dvRe~l~elL~~~~-----~~d--~~~i~m 483 (823)
T KOG2259|consen 417 DMFNDEIEVVRLKAIFALTMISVHLA--IR----EEQLRQILESLEDRSVDVREALRELLKNAR-----VSD--LECIDM 483 (823)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHhe--ec----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCc--HHHHHH
Confidence 88999999999999999999987632 33 445666666677778888888877776531 222 112333
Q ss_pred hHHHHHHHhhhccchhhhHHHHHHHHHHHHhccCCChHHHHHHHhh
Q 001062 729 VLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLS 774 (1167)
Q Consensus 729 ~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~ll~~L~~ 774 (1167)
.+..++.-+. .-.++-+....|.+.++++.+..+-..+..++.
T Consensus 484 ~v~~lL~~L~---kyPqDrd~i~~cm~~iGqnH~~lv~s~m~rfl~ 526 (823)
T KOG2259|consen 484 CVAHLLKNLG---KYPQDRDEILRCMGRIGQNHRRLVLSNMGRFLE 526 (823)
T ss_pred HHHHHHHHhh---hCCCCcHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 3333333221 122333567888888888776555556666653
No 114
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.034 Score=66.05 Aligned_cols=191 Identities=17% Similarity=0.172 Sum_probs=144.2
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHH
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM 85 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l 85 (1167)
++..+.-+.|+-+-+|-.|+..|...+++.+. -+-....+++...+..|.|.++-|-=.|++-+..|+...++ .+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~-~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~i 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKK-ATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DI 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hh
Confidence 34455567778888899999999999986421 12356789999999999999999999999977777766654 45
Q ss_pred HHHHHH-HhcCC---CcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc
Q 001062 86 TDKLCI-KLLNG---KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 86 ~~~L~~-~~~~~---~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
++.|.+ +...+ ..+.|-...-|+..++....+ +...+...++...+.+..++ +...|..++..++.++....
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge--l~~~y~~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE--LVFKYKAVLINTFLSGVREP--DHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHHHh
Confidence 555655 23221 124455666888888877775 66777888888999998865 46779999999999999887
Q ss_pred cchhHHHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcCHHH
Q 001062 162 NLMSNDHERLLSALLPQLSA-NQASVRKKSVSCIASLASSLSDDL 205 (1167)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~~~ 205 (1167)
..++...-+....++...+. +...+|++|+..+..+....+.+.
T Consensus 880 ~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 880 FQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred hhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 77776666777766666554 455999999999999988887764
No 115
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.42 E-value=0.058 Score=61.08 Aligned_cols=254 Identities=15% Similarity=0.130 Sum_probs=136.8
Q ss_pred CCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhh
Q 001062 285 CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEML 364 (1167)
Q Consensus 285 ~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l 364 (1167)
.|+.|...+...++...+++.++.-. ..++| +|+...-|+++.+.+..+.-....+.+.+
T Consensus 72 LPe~fed~l~~wm~~f~~~L~~~~p~-l~~~d-------------------~~e~~~l~kvK~~i~~~~~ly~~kY~e~f 131 (370)
T PF08506_consen 72 LPEFFEDNLSEWMEIFHKYLTYPNPA-LEEDD-------------------DDEPGLLEKVKAWICENLNLYAEKYEEEF 131 (370)
T ss_dssp --HHHHHTHHHHHHHHHHHHH--SGG-G-TT--------------------SSS--HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCcc-cCCCC-------------------cccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36556667777888888888875321 00000 01123458999999999988888887666
Q ss_pred HHHHHHHhhHHHhhh-----ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHH-HH------
Q 001062 365 SKLYEEACPKLIDRF-----KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKS-IN------ 432 (1167)
Q Consensus 365 ~~~~~~i~p~L~~~l-----~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~-l~------ 432 (1167)
.++.+.++....+.+ +.+.+.+...+++.++++++......-+. -++++..|++. +.
T Consensus 132 ~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~-----------~~~~L~~Iie~VI~Pnl~~~ 200 (370)
T PF08506_consen 132 EPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFE-----------NKPHLQQIIEKVIFPNLCLR 200 (370)
T ss_dssp HHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT------------SHHHHHHHHHHTHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhC-----------CHHHHHHHHHHhccCccCCC
Confidence 555555544332222 22334555566777776554321000000 02233333321 12
Q ss_pred ----------------HHhccC-ChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcc----cCCCCchHHHHHHH
Q 001062 433 ----------------RQLREK-SIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN----DKSSTSNLKIEALT 491 (1167)
Q Consensus 433 ----------------~~L~~~-~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~----d~~~~~~~~~~al~ 491 (1167)
+-+... ....|.+|..++..++...++...+ .+...+...++ ++..+++.+..|+.
T Consensus 201 e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~---i~~~~i~~~l~~y~~~~~~~w~~KD~Al~ 277 (370)
T PF08506_consen 201 EEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTS---ILMQYIQQLLQQYASNPSNNWRSKDGALY 277 (370)
T ss_dssp HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-TTT-HHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHhhCCcccHHHHHHHHH
Confidence 112111 1246778999999998766554422 22333333343 44445677888999
Q ss_pred HHHHHhccCC-----CC------chhhhh-HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHH
Q 001062 492 FTRLVLSSHS-----PP------VFHPYI-KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP 559 (1167)
Q Consensus 492 ~l~~l~~~~~-----~~------~~~~~l-~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~ 559 (1167)
+++++..... -. .+..++ ..++|.+. .-.+..+-++..|++.+..+-..+. .+.+..
T Consensus 278 Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~----------~~~l~~ 346 (370)
T PF08506_consen 278 LIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP----------KEQLLQ 346 (370)
T ss_dssp HHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-----------HHHHHH
T ss_pred HHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC----------HHHHHH
Confidence 9998875321 11 233433 45667666 3335567789999999888865542 347888
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHH
Q 001062 560 IYNAIMSRLTNQDQDQEVKECAISCM 585 (1167)
Q Consensus 560 l~~~ll~~l~~~d~~~~vr~~Ai~al 585 (1167)
++|.+...+.+ .+.-|+.-|..|+
T Consensus 347 ~~~~l~~~L~~--~~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 IFPLLVNHLQS--SSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTTS--S-HHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CCcchhhhhhhhC
Confidence 99999999974 3445666665543
No 116
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.36 E-value=0.7 Score=56.49 Aligned_cols=367 Identities=16% Similarity=0.205 Sum_probs=193.6
Q ss_pred HHHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH--hhhhhhcchhhhHHHHHHHhhhc
Q 001062 189 KSVSCIASLASSLSDDL---LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA--VGYRFGPHLGDTVPVLIDYCTSA 263 (1167)
Q Consensus 189 ~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~--~~~~~~p~l~~lvp~l~~~l~~~ 263 (1167)
.++..|..++.....+. =..+++.++..+.+.+ .+....++.++..++-. ....+. -..++|.+...+..
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n--~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s- 342 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDREN--EELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPS- 342 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcC-
Confidence 45566666665443331 1346677777776653 35555555666555432 112222 14588888888877
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCccccccHH--HHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCc
Q 001062 264 SENDEELREYSLQALESFLLRCPRDISSYCD--EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDA 341 (1167)
Q Consensus 264 ~e~~~e~re~al~~l~~l~~~~~~~~~~~l~--~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~ 341 (1167)
++.+++..++..+-++... .+.++.+- .+++.+..++. ||
T Consensus 343 --~~~~l~~~aLrlL~NLSfd--~~~R~~mV~~GlIPkLv~LL~-d~--------------------------------- 384 (708)
T PF05804_consen 343 --ENEDLVNVALRLLFNLSFD--PELRSQMVSLGLIPKLVELLK-DP--------------------------------- 384 (708)
T ss_pred --CCHHHHHHHHHHHHHhCcC--HHHHHHHHHCCCcHHHHHHhC-CC---------------------------------
Confidence 7788899999888777422 12221111 12233333332 22
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhh-ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHH
Q 001062 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL 420 (1167)
Q Consensus 342 sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l 420 (1167)
+.|..+.+.|..+.......-.--+..++|.+++.+ ...++.+..+++..+.-+.....+. ..+
T Consensus 385 --~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna-------------qlm 449 (708)
T PF05804_consen 385 --NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA-------------QLM 449 (708)
T ss_pred --chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH-------------HHH
Confidence 233445555544433211000112345667776664 3345556544433322222111100 000
Q ss_pred H--HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhc
Q 001062 421 K--QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1167)
Q Consensus 421 ~--~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1167)
. ..++.+++... +.+++ ..+.++..+..+- +.....+...+..+...+.... +.+...+++..++.+.-
T Consensus 450 ~~g~gL~~L~~ra~---~~~D~----lLlKlIRNiS~h~-~~~k~~f~~~i~~L~~~v~~~~-~ee~~vE~LGiLaNL~~ 520 (708)
T PF05804_consen 450 CEGNGLQSLMKRAL---KTRDP----LLLKLIRNISQHD-GPLKELFVDFIGDLAKIVSSGD-SEEFVVECLGILANLTI 520 (708)
T ss_pred HhcCcHHHHHHHHH---hcccH----HHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhccc
Confidence 0 12334443322 22222 3456666666543 2333334444444555555443 46788888888887753
Q ss_pred cCCCCchhhhhH--hhHHHHHHHhcCC--chHHHHHHHHHHHHHHHhccCCccccCCCCccchH--HHHHHHHHHhhcCC
Q 001062 499 SHSPPVFHPYIK--ALSSPVLAAVGER--YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ--PIYNAIMSRLTNQD 572 (1167)
Q Consensus 499 ~~~~~~~~~~l~--~ll~~l~~~l~d~--~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~--~l~~~ll~~l~~~d 572 (1167)
. ...+...+. .++|.+...+... ...+.-++..++|.++.. + ...+.+- .+++.+++.+..+.
T Consensus 521 ~--~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~-------~~A~lL~~sgli~~Li~LL~~kq 589 (708)
T PF05804_consen 521 P--DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--P-------ECAPLLAKSGLIPTLIELLNAKQ 589 (708)
T ss_pred C--CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--H-------HHHHHHHhCChHHHHHHHHHhhC
Confidence 2 234555553 5888888888633 336888888888877632 1 1222322 56677777777667
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHH
Q 001062 573 QDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLR 652 (1167)
Q Consensus 573 ~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~ 652 (1167)
.|.|.--+.++++..++.+ +.||..-++ . .++...|.+++.
T Consensus 590 eDdE~VlQil~~f~~ll~h----------------------~~tr~~ll~-------~----------~~~~~ylidL~~ 630 (708)
T PF05804_consen 590 EDDEIVLQILYVFYQLLFH----------------------EETREVLLK-------E----------TEIPAYLIDLMH 630 (708)
T ss_pred chHHHHHHHHHHHHHHHcC----------------------hHHHHHHHh-------c----------cchHHHHHHHhc
Confidence 7888888888888888755 222221111 0 123444666667
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 001062 653 KANRALRQATLGTMNSLVVA 672 (1167)
Q Consensus 653 ~~~~~lr~~al~~L~~l~~~ 672 (1167)
+.|..+|..|=.||..++..
T Consensus 631 d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 631 DKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 77888888888888877764
No 117
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.31 E-value=0.058 Score=72.00 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=169.7
Q ss_pred hcCCChhHHhHhHHHHHHHhcc----cccCCChHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHhhhhcCh---hhHHH
Q 001062 13 ITGKDKDFRYMATSDLLNELNK----ESFKADADLEVKLSNIVVQQL-DDVAGDVSGLAVKCLAPLVKKVSE---PRVVE 84 (1167)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~----~~~~~~~~~~~~i~~~ll~~L-~d~~~~Vr~~A~~~l~~l~~~~~~---~~~~~ 84 (1167)
..+++.++|+-|+.-|++.-.+ +.. ....-++.++.-+...+ +..+.+||...++|+.+|+..... .-|..
T Consensus 1146 g~~~n~~va~fAidsLrQLs~kfle~eEL-~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWkt 1224 (1780)
T PLN03076 1146 GCSENLSIAIFAMDSLRQLSMKFLEREEL-ANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKS 1224 (1780)
T ss_pred cCCcchhHHHHHHHHHHHHHHHhcchhhh-hchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHH
Confidence 4566788999999977653332 110 11134456666555544 366789999999999999864332 24888
Q ss_pred HHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhcc
Q 001062 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS--SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1167)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~--~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~ 162 (1167)
++..|.....+.....-..+-..++.++.+.-.. ..-......++--|...-.. ..+.++...|++.|..+...+..
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q-~~~~nISL~AI~lL~~~~~~La~ 1303 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNS-RFNKDISLNAIAFLRFCATKLAE 1303 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhC-cCcccccHHHHHHHHHHHHHHHh
Confidence 8888877665554444445555566665441110 00011223333333333322 22355666777766644333200
Q ss_pred ------------------------------------chhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh----hcC
Q 001062 163 ------------------------------------LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLAS----SLS 202 (1167)
Q Consensus 163 ------------------------------------~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~----~~~ 202 (1167)
.....|-.++..|.....+++..||++|++.|=.+.. .++
T Consensus 1304 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076 1304 GDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred ccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCC
Confidence 0012344556666666678889999999997655543 344
Q ss_pred HHH----HHHHHHHHHHHhhcC-----------------CCChH----HHHHHHHHHHHHHHHhh---hhhhcchhhhHH
Q 001062 203 DDL----LAKATIEVVRNLRSK-----------------GAKPE----MIRTNIQMVGALSRAVG---YRFGPHLGDTVP 254 (1167)
Q Consensus 203 ~~~----~~~l~~~l~~~l~~~-----------------~~~~~----~r~~~~~~l~~l~~~~~---~~~~p~l~~lvp 254 (1167)
.+. |..++-.++..++.. +...+ ...++.+++..++.... +.+.+.|+.++.
T Consensus 1384 ~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ 1463 (1780)
T PLN03076 1384 LPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLM 1463 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 444555555554321 00000 23455555555555433 344556677777
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccc-ccHHHHHHHHHHhhc
Q 001062 255 VLIDYCTSASENDEELREYSLQALESFLLRCPRDIS-SYCDEILHLTLEYLS 305 (1167)
Q Consensus 255 ~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~-~~l~~ii~~~~~~l~ 305 (1167)
.+..++.. +++.+...+..+|..++...+..|. ..+..++..+.+...
T Consensus 1464 ll~~ci~q---~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1464 LLVSFIKR---PHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHcC---chHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 77777777 7788999999999999999988887 478888887776654
No 118
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.67 Score=55.11 Aligned_cols=237 Identities=20% Similarity=0.236 Sum_probs=124.7
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHH-HHHHHhccCCCCchhh
Q 001062 429 KSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALT-FTRLVLSSHSPPVFHP 507 (1167)
Q Consensus 429 ~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~-~l~~l~~~~~~~~~~~ 507 (1167)
..+.+-.+..+...|..++. +|+...++.. +..+-..+.+++-|+. ..++..++- .+.. +.. .....
T Consensus 103 sslmkD~t~~~d~yr~~AiR---~L~~I~d~~m---~~~iery~kqaivd~~--~avSsaalvss~hl-l~~-~~~~v-- 170 (865)
T KOG1078|consen 103 SSLMKDMTGKEDLYRAAAIR---ALCSIIDGTM---LQAIERYMKQAIVDKN--PAVSSAALVSSYHL-LPI-SFDVV-- 170 (865)
T ss_pred HHHHhhccCCCcchhHHHHH---HHHhhcCcch---hHHHHHHHHhHeeccc--cccchHHHHHHhhh-hcc-cHHHH--
Confidence 33444444455556666655 4444445555 5555566667777763 233333321 1111 111 11111
Q ss_pred hhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 001062 508 YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGL 587 (1167)
Q Consensus 508 ~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~ 587 (1167)
..-...+..+.++.+.-++..|++.+-++.++-+ -.+.+++..... + .++..-..|++.
T Consensus 171 --krw~neiqea~~s~~~m~QyHalglLyqirk~dr-----------la~sklv~~~~~----~----~~~~~~A~~~li 229 (865)
T KOG1078|consen 171 --KRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR-----------LAVSKLVQKFTR----G----SLKSPLAVCMLI 229 (865)
T ss_pred --HHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHcc----c----cccchhHHHHHH
Confidence 2223334444445555677788888877755311 123333333222 1 111111122221
Q ss_pred -HHHhcCcccccchhhhHHHHHHhhc--CchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001062 588 -VISTFGDNLGAELPACLPVLVDRMG--NEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLG 664 (1167)
Q Consensus 588 -l~~~~g~~l~~~~~~~l~~L~~~L~--~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~ 664 (1167)
.....-+.-.+.....++.+-.+++ .|..-..|.+++..+.... ...+.+.+..|..++.++...+|-+|++
T Consensus 230 r~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~-----~r~l~pavs~Lq~flssp~~~lRfaAvR 304 (865)
T KOG1078|consen 230 RIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTN-----SRELAPAVSVLQLFLSSPKVALRFAAVR 304 (865)
T ss_pred HHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccC-----HhhcchHHHHHHHHhcCcHHHHHHHHHH
Confidence 1111111123445566777777775 4566666777776665321 2233347788888999999999999999
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHH
Q 001062 665 TMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELC 708 (1167)
Q Consensus 665 ~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l 708 (1167)
.|..++..++..+.. --.++-+++++.|+.+.-++...+
T Consensus 305 tLnkvAm~~P~~v~~-----cN~elE~lItd~NrsIat~AITtL 343 (865)
T KOG1078|consen 305 TLNKVAMKHPQAVTV-----CNLDLESLITDSNRSIATLAITTL 343 (865)
T ss_pred HHHHHHHhCCccccc-----cchhHHhhhcccccchhHHHHHHH
Confidence 999999988754322 123455667778877766655433
No 119
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.30 E-value=0.56 Score=64.23 Aligned_cols=535 Identities=14% Similarity=0.214 Sum_probs=267.5
Q ss_pred cCCChhHHhHhHHHHHHHhccccc--CCCh---HHHHHHHHHHHHh-cCCCChhHHHHHHHHHH-HhhhhcChhhHHHHH
Q 001062 14 TGKDKDFRYMATSDLLNELNKESF--KADA---DLEVKLSNIVVQQ-LDDVAGDVSGLAVKCLA-PLVKKVSEPRVVEMT 86 (1167)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~--~~~~---~~~~~i~~~ll~~-L~d~~~~Vr~~A~~~l~-~l~~~~~~~~~~~l~ 86 (1167)
...|+..|--|.-.++..+..... +..+ .....++..++.+ +.|+++.+|-....++. ...++.. .+..+
T Consensus 491 ~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~la---Q~~~l 567 (2341)
T KOG0891|consen 491 EADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLA---QPDLL 567 (2341)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhc---CchhH
Confidence 344566666665555555554222 1111 2245555555543 46999999988888877 1111111 22333
Q ss_pred HHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhH
Q 001062 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN 166 (1167)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~ 166 (1167)
..++..+.++.-..++.+...++..+..-| .+.-+.++...+...+-++-.. -..++..+-.-+..++........+
T Consensus 568 r~~~~al~~~~l~~~~~~~~~ig~l~~~~~--a~vl~~lr~~~l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~ 644 (2341)
T KOG0891|consen 568 RLLFIALHDENFAIQELATVIIGRLSSYNP--AYVLPSLRKTLLELLTELEFSG-MARTKEESAKLLCELIISSPVLISP 644 (2341)
T ss_pred HHHHHHhhhhhhhhHHhHHhhccccccccH--HHHhHHHHHHHHHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHh
Confidence 334444444433334444333332222111 1112222233333333222211 1122333333333333333334457
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh
Q 001062 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY 243 (1167)
Q Consensus 167 ~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~ 243 (1167)
+...++..+++.+.++++.+-+.+..+++.++...+.+. .+.+++-+.+.+.+... ...|+.++.+++.+....+.
T Consensus 645 ~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~-~~rr~aslk~l~~l~s~~~~ 723 (2341)
T KOG0891|consen 645 YVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSS-LGKRLAALKALGQLESSTGY 723 (2341)
T ss_pred hcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhh-hhchhHHHHHhhhhhcccce
Confidence 888888999999999999999999999999999988432 34555555555554332 35678899999999998888
Q ss_pred hhhcch--hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCccc
Q 001062 244 RFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDE 321 (1167)
Q Consensus 244 ~~~p~l--~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~ 321 (1167)
...||. |.++..+.+.+... ...-+|.++++.++... ...||.-..+.... ..+.+.++.--+.+-...+
T Consensus 724 ~v~p~~~~P~ll~~l~~~~~te--~~~~ir~~~v~~~g~~g-----~~d~~~~~~~~~~~-~~~~~~~~~k~~~~~~~~~ 795 (2341)
T KOG0891|consen 724 VVDPYLDYPELLDILINILKTE--QSSTIRREAIRLLGLLG-----ALDPYKHKVTEGTS-ASKISSEQIKSDIDISLLE 795 (2341)
T ss_pred EecccccChHHHHHHHHHHhHh--hhhHHHHHHHHHhhhhc-----ccchhHHHHHhhhh-hHhhhhccccccchHHHHH
Confidence 788865 77777777766541 34557888888877443 33455554444331 1122223221100000000
Q ss_pred ccccccchhhcCCCCC---------CCCcch-HHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHH
Q 001062 322 AYEEEEEDESANEYTD---------DEDASW-KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVF 391 (1167)
Q Consensus 322 ~~~~~~d~~~~~~~~d---------ddd~sw-~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~ 391 (1167)
... . . +-+..|.- -.|.+- +=-...+.+...+..+.+.....+...++|.++...+.-..+.+...+
T Consensus 796 ~~~-~-~-~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~ 872 (2341)
T KOG0891|consen 796 SGV-N-P-SNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYF 872 (2341)
T ss_pred hhh-h-h-hhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHH
Confidence 000 0 0 00000000 000000 000011111112222222222234555555544332211122221111
Q ss_pred HHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHH
Q 001062 392 NTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPG 471 (1167)
Q Consensus 392 ~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~ 471 (1167)
.-++.++-... .+..++.+.+...+...+.. +.........+..++...+.+.|..++++.++.
T Consensus 873 ~q~~~~~~~~~---------------~h~~~~~~~i~~~i~~~~~~-~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~ 936 (2341)
T KOG0891|consen 873 QQLTSLVAIVR---------------QHIRPYMESIFTLIKDFWPP-DTSLQITIISLIEDIAVALGGEFKKYLPELLPT 936 (2341)
T ss_pred Hhhhhhhhccc---------------hhHhhhhhhHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccc
Confidence 11111111000 12334445555444444431 122222334455566666778888899988888
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCC--chHHHHHHHHHHHHHHHhccCCcccc
Q 001062 472 IEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER--YYKVTAEALRVCGELVRVLRPSVEGL 549 (1167)
Q Consensus 472 l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~--~~~v~~~al~~l~~l~~~~~~~~~~~ 549 (1167)
....+ ... ....+.-.......+.+. ......|...+.|.+++.+.+. .+.++..++.+.+.+....
T Consensus 937 ~l~~~-~~~-~s~~~~~~~~~~~~~~~~--~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~------- 1005 (2341)
T KOG0891|consen 937 MLTVL-QHD-KSKDRVVSRKVLQSLQKF--GSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQV------- 1005 (2341)
T ss_pred hheee-ccc-ccchHHHHHHhhHHHHhc--CccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhh-------
Confidence 77766 221 122233333333333332 1234456667788888887766 3456667777777776543
Q ss_pred CCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCccccc
Q 001062 550 GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA 598 (1167)
Q Consensus 550 ~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~ 598 (1167)
++..|...+....+..+..+ .+++......++.+....|..+..
T Consensus 1006 --~~~~~~s~i~~~~~r~l~~s---~el~~~~~~~l~~l~~~~~~~~~i 1049 (2341)
T KOG0891|consen 1006 --DLSEYASRIIHPLVRVLSSS---PELRDVIMDTLIALVKQLGKDFAI 1049 (2341)
T ss_pred --HHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHhhcCceee
Confidence 34556777777667777533 788888888888888887765543
No 120
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.69 Score=55.03 Aligned_cols=247 Identities=15% Similarity=0.122 Sum_probs=136.6
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCch
Q 001062 426 KIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF 505 (1167)
Q Consensus 426 ~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~ 505 (1167)
+-+..+.-+++++....|-++..+|..++..+|...... -.-+...++|.+ ..+ +.-.++.++++....
T Consensus 282 pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c----N~elE~lItd~N----rsI-at~AITtLLKTG~e~-- 350 (865)
T KOG1078|consen 282 PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC----NLDLESLITDSN----RSI-ATLAITTLLKTGTES-- 350 (865)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc----chhHHhhhcccc----cch-hHHHHHHHHHhcchh--
Confidence 366777778888888899999999999999888753211 122333444432 222 333466666653322
Q ss_pred hhhhHhhHHHHHHHh---cCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHH
Q 001062 506 HPYIKALSSPVLAAV---GERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAI 582 (1167)
Q Consensus 506 ~~~l~~ll~~l~~~l---~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai 582 (1167)
.++.++..+...+ .|.+-.|...|+.++...... .-..+++.+...+.+ +...+-+...+
T Consensus 351 --sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~--------------k~~~~m~FL~~~Lr~-eGg~e~K~aiv 413 (865)
T KOG1078|consen 351 --SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPR--------------KHTVMMNFLSNMLRE-EGGFEFKRAIV 413 (865)
T ss_pred --HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccH--------------HHHHHHHHHHHHHHh-ccCchHHHHHH
Confidence 3344555444444 455555556666655443211 112333444344432 33445555555
Q ss_pred HHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhc-CCCCCchhhHHHHHHHHHHHHHHHhhHHHHHH
Q 001062 583 SCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAA-SPLHIDLTCVLEHVIAELTAFLRKANRALRQA 661 (1167)
Q Consensus 583 ~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~-~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~ 661 (1167)
.++-.++.... ..-...+..|++.+.+-..+.-+.+.++.+.. .+....-+.|+..+.. -+--.|..+|.+
T Consensus 414 d~Ii~iie~~p----dsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyN----RviLEn~ivRaa 485 (865)
T KOG1078|consen 414 DAIIDIIEENP----DSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYN----RVILENAIVRAA 485 (865)
T ss_pred HHHHHHHHhCc----chhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhh----hhhhhhhhhHHH
Confidence 66665554221 12234455555555444445556666665552 2212222556555443 223467789999
Q ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhh
Q 001062 662 TLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMA 713 (1167)
Q Consensus 662 al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~ 713 (1167)
|+.||..+..... ...+.+...+.+.+.+.|..++..+--.+..+-.
T Consensus 486 Av~alaKfg~~~~-----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 486 AVSALAKFGAQDV-----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHHHHHHHhcCCC-----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 9999999873221 1234566667777888888888776655555543
No 121
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.66 Score=54.77 Aligned_cols=479 Identities=13% Similarity=0.149 Sum_probs=245.2
Q ss_pred HHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHhhhhcChhhH--HHHHHHHHHHhcCCCcchhcHHHHHHHHHHh-h
Q 001062 42 DLEVKLSNIVVQQLD----DVAGDVSGLAVKCLAPLVKKVSEPRV--VEMTDKLCIKLLNGKDQHRDIASIALKTIIA-E 114 (1167)
Q Consensus 42 ~~~~~i~~~ll~~L~----d~~~~Vr~~A~~~l~~l~~~~~~~~~--~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~-~ 114 (1167)
...++++....+++. ..|+++-+....|+|..+.-+.-.-+ ...++-|+..+. -+++|..|+-++-.++. .
T Consensus 185 ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKk 262 (980)
T KOG2021|consen 185 NDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKK 262 (980)
T ss_pred hhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcC
Confidence 455666666666653 44889999999999988863321111 233444444443 34678888888877764 3
Q ss_pred cCCc-hhHHHHHHHH--HHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHH
Q 001062 115 VTTS-SLAQSIHTSL--TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSV 191 (1167)
Q Consensus 115 ~~~~-~~~~~~~~~i--~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~ 191 (1167)
+.+- ++ +.++.+ .-.+.. .-+. +...-.+-.+-++.++..+|-.+...+..+- +..++..+..
T Consensus 263 MkP~dKL--~lln~L~q~l~lfg-~~s~--dq~~d~df~e~vskLitg~gvel~~i~s~ln-------seld~~~kqn-- 328 (980)
T KOG2021|consen 263 MKPMDKL--ALLNMLNQTLELFG-YHSA--DQMDDLDFWESVSKLITGFGVELTIIISQLN-------SELDTLYKQN-- 328 (980)
T ss_pred CChhHHH--HHHHHHHHHHHHHh-hhcc--ccccCchHHHHHHHHHhhcceeeehhHhhhh-------hccCHHHHHH--
Confidence 4441 11 011111 111111 1111 1112223344456666677766543333322 2223333332
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH---HHhh---hhhhcchhhhHHHHHHHhhhcC-
Q 001062 192 SCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS---RAVG---YRFGPHLGDTVPVLIDYCTSAS- 264 (1167)
Q Consensus 192 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~---~~~~---~~~~p~l~~lvp~l~~~l~~~~- 264 (1167)
|+. .+-++++.+++.+.+... +.--..+..+.... +..+ ..-.-++..++..++..+.++.
T Consensus 329 -~l~---------~ll~~vpyllq~l~~e~d--dit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydem 396 (980)
T KOG2021|consen 329 -VLS---------ILLEIVPYLLQFLNNEFD--DITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEM 396 (980)
T ss_pred -HHH---------HHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHH
Confidence 222 123467777777765432 22223333333222 2221 2233466777777777665521
Q ss_pred ----C---C-Ch-----hHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhh
Q 001062 265 ----E---N-DE-----ELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDES 331 (1167)
Q Consensus 265 ----e---~-~~-----e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~ 331 (1167)
| + ++ |+|.--......++..-|+-+...+.+.+...+...
T Consensus 397 y~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns--------------------------- 449 (980)
T KOG2021|consen 397 YFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNS--------------------------- 449 (980)
T ss_pred hhcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC---------------------------
Confidence 1 1 11 245444444445555445433333333333322211
Q ss_pred cCCCCCCCCcchHHHHHHHHHHHHHHhcCChh--------h--HHHHHHHhhHHHhh--hccCChhHHHHHHHHHHHHHH
Q 001062 332 ANEYTDDEDASWKVRRAAAKCLAALIVSRPEM--------L--SKLYEEACPKLIDR--FKEREENVKMDVFNTFIELVR 399 (1167)
Q Consensus 332 ~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~--------l--~~~~~~i~p~L~~~--l~d~~~~vr~~~~~~l~~l~~ 399 (1167)
.+.+|..=+.|...+-.+.++.+.. + ........+.++.. ....++.|...-++.+...-+
T Consensus 450 -------~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~k 522 (980)
T KOG2021|consen 450 -------KEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNK 522 (980)
T ss_pred -------CcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Confidence 1247999999999988888765411 1 12344455555433 245566665443333322111
Q ss_pred hhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH--HhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcc
Q 001062 400 QTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINR--QLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN 477 (1167)
Q Consensus 400 ~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~--~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~ 477 (1167)
... .=.+++|-++..... .+..++.+||..++.+|..++..+...+-++...++..|...|+
T Consensus 523 ff~----------------~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 523 FFS----------------TESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred HHh----------------cchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 110 003467777766553 36677888999999999988888877788888888888888773
Q ss_pred cC-------------------------------CCCchHHHHHHH-----------------------------------
Q 001062 478 DK-------------------------------SSTSNLKIEALT----------------------------------- 491 (1167)
Q Consensus 478 d~-------------------------------~~~~~~~~~al~----------------------------------- 491 (1167)
.+ +...+.+...+.
T Consensus 587 ~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~ 666 (980)
T KOG2021|consen 587 IKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHI 666 (980)
T ss_pred CcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 11 000011111111
Q ss_pred --HHHHHhccCCCCc-------hhhhhHhhHHHHHHHhc--CCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHH
Q 001062 492 --FTRLVLSSHSPPV-------FHPYIKALSSPVLAAVG--ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPI 560 (1167)
Q Consensus 492 --~l~~l~~~~~~~~-------~~~~l~~ll~~l~~~l~--d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l 560 (1167)
+++.+.++..... ....+..++..++..+. .+.-.+|...-.+++.++..+++ +.-||++++
T Consensus 667 lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~-------~vlPfipkl 739 (980)
T KOG2021|consen 667 LMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGN-------KVLPFIPKL 739 (980)
T ss_pred HHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcch-------hhhcchHHH
Confidence 1222222110000 00111222222222221 12224566555666777766655 578999999
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHh
Q 001062 561 YNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDR 610 (1167)
Q Consensus 561 ~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~ 610 (1167)
...++. +.+.+--..-+..+.+++..+.....+.+.+.+|.+..|
T Consensus 740 ie~lL~-----s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~r 784 (980)
T KOG2021|consen 740 IELLLS-----STDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNR 784 (980)
T ss_pred HHHHHh-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887664 344443345567777888777777777777777777755
No 122
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=97.29 E-value=0.17 Score=57.96 Aligned_cols=262 Identities=18% Similarity=0.203 Sum_probs=165.4
Q ss_pred hcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHh----cC------CC-ChhHHHHHHHHHHHhh------h
Q 001062 13 ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQ----LD------DV-AGDVSGLAVKCLAPLV------K 75 (1167)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~----L~------d~-~~~Vr~~A~~~l~~l~------~ 75 (1167)
+.+.|.+-|.=|-..|.+.++......+.....+-++.+++. +. || +.++-.+|.+|++-+. .
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 345677778666666777776544444444444444444433 22 34 7788999999999655 5
Q ss_pred hcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHH-hhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHH
Q 001062 76 KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTII-AEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1167)
Q Consensus 76 ~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~-~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~ 154 (1167)
.++++....+++..+..+.+++.. +.++..++.-+- .++++.-........++..+ ..+.++=++..+..+.+.++-
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~-K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l-~~i~~~~~s~si~~erL~i~~ 159 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSP-KSICTHYLWCLSDQKFSPKIMTSDRVERLLAAL-HNIKNRFPSKSIISERLNIYK 159 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH-HHhhccCCchhHHHHHHHHHH
Confidence 677787777899888888766543 344444443322 23443211111122222222 222321225678889999999
Q ss_pred HHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HHHH------------------HHHHHHH
Q 001062 155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LLAK------------------ATIEVVR 215 (1167)
Q Consensus 155 ~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~------------------l~~~l~~ 215 (1167)
.++..++..+......=++.++..+-+....+|.+|..+...+...++.+ .+.. +.+.+..
T Consensus 160 ~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~ 239 (372)
T PF12231_consen 160 RLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKE 239 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHH
Confidence 99999999887776666777777776777789999888888777766654 1111 1112222
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHhhhh---hhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 001062 216 NLRSKGAKPEMIRTNIQMVGALSRAVGYR---FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1167)
Q Consensus 216 ~l~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~ 283 (1167)
.+.+. +.-..+.+.|+.+..-.+.. -.+|++..+...-.+++. .|+.+|..|+.++..++.
T Consensus 240 mi~~~----~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~---~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 240 MIKSK----DEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNS---SDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred HHhCc----CCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 22221 12346778888887766542 355788888888888888 889999999999998875
No 123
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=97.28 E-value=0.079 Score=61.29 Aligned_cols=304 Identities=16% Similarity=0.180 Sum_probs=186.9
Q ss_pred hhHHhHhHHHHHHHhcccc--cCCChHHHHHHHHHHHHhcC-----------CCChh--H-------HHHHHHHHHHhhh
Q 001062 18 KDFRYMATSDLLNELNKES--FKADADLEVKLSNIVVQQLD-----------DVAGD--V-------SGLAVKCLAPLVK 75 (1167)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~--~~~~~~~~~~i~~~ll~~L~-----------d~~~~--V-------r~~A~~~l~~l~~ 75 (1167)
++.+..+|++|...++... ..++++....++.++-.-+- |++.+ + -+.+...|-.++.
T Consensus 40 Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~NifR~lP~~~~~~~~~~~d~~~~e~~WpHL~~vY~il~~~i~ 119 (409)
T PF01603_consen 40 KEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIFRPLPPIPNPSFDPDDDEPFLEPSWPHLQLVYEILLRFIE 119 (409)
T ss_dssp HHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-S-----SS--S-GGG------TTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhccCCCCCcccccCCccccccccccccHhHHHHHHHHHHHHH
Confidence 4457899999999999876 67788778887777653331 11111 1 2344555555554
Q ss_pred hcCh-----hhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHH
Q 001062 76 KVSE-----PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECL 150 (1167)
Q Consensus 76 ~~~~-----~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~ 150 (1167)
.... ..-..++.+|+..+.++++..|+....-|..+....+. ...-+.+.+...+.+.+.... ...--.+.+
T Consensus 120 ~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~--~r~~Ir~~i~~~~~~fi~e~~-~~~gI~elL 196 (409)
T PF01603_consen 120 SPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPN--LRSFIRKSINNIFYRFIYETE-RHNGIAELL 196 (409)
T ss_dssp STT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TT--THHHHHHHHHHHHHHHHHTTS---STHHHHH
T ss_pred CccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCcc-cccCHHHHH
Confidence 3222 12246788888888888888899888888888887765 233344555555555554433 345577899
Q ss_pred HHHHHHHHHhccchh-HHHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHH
Q 001062 151 DILCDVLHKFGNLMS-NDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIR 228 (1167)
Q Consensus 151 ~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~ 228 (1167)
++++.++..+..-+. .+..-+...+++..+.+.. .-...=..|+..+...-+. +...++..++..--.. +.....
T Consensus 197 eil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~-l~~~~i~~llk~WP~t--~s~Kev 273 (409)
T PF01603_consen 197 EILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS-LAEPVIKGLLKHWPKT--NSQKEV 273 (409)
T ss_dssp HHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG-GHHHHHHHHHHHS-SS---HHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHhCCCC--CchhHH
Confidence 999999998887665 4555566888888877765 4455556666666643322 3455666666654322 223333
Q ss_pred HHHHHHHHHHHHhh-hhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHH--HHHhCCccccccHHHHHHHHHHhhc
Q 001062 229 TNIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALES--FLLRCPRDISSYCDEILHLTLEYLS 305 (1167)
Q Consensus 229 ~~~~~l~~l~~~~~-~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~--l~~~~~~~~~~~l~~ii~~~~~~l~ 305 (1167)
..+.-++.++...+ ..|.+....+...+-.+++. .+-.|.|.|+..+.+ ++.. +..+-..+++.+...+.
T Consensus 274 ~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S---~h~qVAErAl~~w~n~~~~~l----i~~~~~~i~p~i~~~L~ 346 (409)
T PF01603_consen 274 LFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISS---PHFQVAERALYFWNNEYFLSL----ISQNSRVILPIIFPALY 346 (409)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTS---SSHHHHHHHHGGGGSHHHHHH----HHCTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHCCHHHHHH----HHhChHHHHHHHHHHHH
Confidence 45677777777654 57888888888888888888 788898888766532 2321 23445566666665553
Q ss_pred cCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcch--HHHHHHHHHHHHHHhcCChhhH
Q 001062 306 YDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW--KVRRAAAKCLAALIVSRPEMLS 365 (1167)
Q Consensus 306 ~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw--~vR~aA~~~l~~li~~~~~~l~ 365 (1167)
..- ...| .||..|..++..+....|+...
T Consensus 347 ~~~-------------------------------~~HWn~~Vr~~a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 347 RNS-------------------------------KNHWNQTVRNLAQNVLKILMEMDPKLFD 377 (409)
T ss_dssp STT-------------------------------SS-SSTTHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHH-------------------------------HHHhhHHHHHHHHHHHHHHHHhCHHHHH
Confidence 110 0124 6999999999988887775443
No 124
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.25 E-value=1 Score=56.29 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=113.4
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhc-----CCC-----ChhHHHHHHHHHHHhhh
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL-----DDV-----AGDVSGLAVKCLAPLVK 75 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L-----~d~-----~~~Vr~~A~~~l~~l~~ 75 (1167)
+..|++.+-++.=.+|..|.-.|+..++......+....+.++-.++..+ +|= -..||.+.++.|+.+.+
T Consensus 79 ~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~ 158 (1549)
T KOG0392|consen 79 LEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLK 158 (1549)
T ss_pred HHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHH
Confidence 34455567778888999999999988876444444444555554444333 332 23799999999999999
Q ss_pred hcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHH
Q 001062 76 KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCD 155 (1167)
Q Consensus 76 ~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~ 155 (1167)
+..++...+.++.+.+.+..++++.|.+.+.+++..+. ... ......+..+++....+|++. +.+|+..|...+..
T Consensus 159 ~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a-ir~-d~l~~~~~~vl~~~i~~L~ds--~ddv~~~aa~~l~~ 234 (1549)
T KOG0392|consen 159 HMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVA-IRQ-DLLFQLLNLVLDFVIEGLEDS--DDDVRSVAAQFLVP 234 (1549)
T ss_pred hhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhhhhhc--chHHHHHHHHHhhh
Confidence 99998889999999998888889999999999998776 322 234466778888999999886 47888888888877
Q ss_pred HHHHh
Q 001062 156 VLHKF 160 (1167)
Q Consensus 156 l~~~~ 160 (1167)
+....
T Consensus 235 ~~s~~ 239 (1549)
T KOG0392|consen 235 APSIQ 239 (1549)
T ss_pred hhHHH
Confidence 76665
No 125
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=1 Score=56.16 Aligned_cols=662 Identities=13% Similarity=0.125 Sum_probs=321.2
Q ss_pred HHHHHHHHH----HHHHHHhccCChhhHHHHHHHHHHHHHhc--CchhHhh---hhh-hHHHHHHhcccCCCCchHHHHH
Q 001062 420 LKQEVSKIV----KSINRQLREKSIKTKVGAFSVLRELVVVL--PDCLADH---IGS-LIPGIEKSLNDKSSTSNLKIEA 489 (1167)
Q Consensus 420 l~~~~~~l~----~~l~~~L~~~~~~~r~~~~~~l~~l~~~~--~~~l~~~---l~~-l~~~l~~~l~d~~~~~~~~~~a 489 (1167)
+...+|.++ ..+...+...+...|-+.+.+++.++... .....++ +.. ++..+..-+.|- +..+|..+
T Consensus 302 lS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv--sa~vRskV 379 (1251)
T KOG0414|consen 302 LSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV--SAYVRSKV 379 (1251)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHH
Confidence 344555554 33444566667778888888888776543 2222232 332 566666666665 56899999
Q ss_pred HHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhh
Q 001062 490 LTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLT 569 (1167)
Q Consensus 490 l~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~ 569 (1167)
+..+..++..+. .....+..++......+.|++.-||..|+..+..+...- |-. . ..-..-+...++.-+++++
T Consensus 380 Lqv~~~l~~~~s--~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~-Pfs-~--~~~~~~~~~~~E~~~~~~e 453 (1251)
T KOG0414|consen 380 LQVFRRLFQQHS--IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRH-PFS-S--ELRSDDLRAKLEKELQKLE 453 (1251)
T ss_pred HHHHHHHHHccC--CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcC-Cch-h--hhcchhhhhhHHHHHHhhh
Confidence 999999998653 333466788888899999999999999999999887652 210 0 0000011122222222332
Q ss_pred cCCCCHHHHHHHHHHHHH-------HHHhc------CcccccchhhhHHHHHHhhcCch---hhHHHHHHHHHHh-cCCC
Q 001062 570 NQDQDQEVKECAISCMGL-------VISTF------GDNLGAELPACLPVLVDRMGNEI---TRLTAVKAFAVIA-ASPL 632 (1167)
Q Consensus 570 ~~d~~~~vr~~Ai~alg~-------l~~~~------g~~l~~~~~~~l~~L~~~L~~e~---~r~~a~~al~~i~-~~~~ 632 (1167)
.+..+-+-.+......+. +...- +........ .-+... .+.++. .+..-+--....+ .-..
T Consensus 454 ~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~-~~~e~~-~~~~~~~s~~~~~~i~q~~~~vq~l~d 531 (1251)
T KOG0414|consen 454 EELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDN-KQEEHC-LLENEVESVPAENEIMQLKALVQFLED 531 (1251)
T ss_pred hhcccccccchhhccchhhhhcccceeechhhhhhhccccccccc-cchhhh-hhhhhhcccchHHHHHHHHHHHHHHHH
Confidence 111000000111111111 10000 000100000 000000 111111 0111000000000 0001
Q ss_pred CCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHh
Q 001062 633 HIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLM 712 (1167)
Q Consensus 633 ~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~ 712 (1167)
..+|...+...++.+..++-..+..--..++..+.. +..++ ++. -+.-+..+++++=..|..++.+...+...+.
T Consensus 532 ~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl~~-c~~F~--I~g--ae~~irkMl~LVWskd~~i~e~v~~ayk~l~ 606 (1251)
T KOG0414|consen 532 AISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFLVR-CKQFG--IDG--AEFGIRKMLPLVWSKDKEIREAVENAYKQLY 606 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHhC--CCc--HHHHHHHHhhhhhCCCccHHHHHHHHHHHHh
Confidence 235677788888888888876655444444443332 22222 222 2445566777765566678888888888887
Q ss_pred hcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccCCChHHHHHHHhhcC--CCCCCCcchhhhhh
Q 001062 713 ADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSA--KPSPQSGGVAKQAM 790 (1167)
Q Consensus 713 ~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~ll~~L~~~~--~~~~~~~~~~~~a~ 790 (1167)
-.- .|.....-...+...+..++.... -.++.+++.++..++..+. .-..++..|.... +.++.+. ++..
T Consensus 607 ~~~--~~n~~~~e~~~ia~NL~~l~~~~s--~~d~~slE~vl~~lv~~~~-Id~~Vi~~Lw~~ftlq~~~~~~---~q~~ 678 (1251)
T KOG0414|consen 607 FRP--DGNSKASEASSIAQNLSKLLIDAS--IGDLTSLEEVLCELVARGY-IDAAVINKLWEIFTLQKKGTTN---EQSR 678 (1251)
T ss_pred ccC--CCCchhhHHHHHHHHHHHHHhccc--ccchhhHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHhccCch---hhhc
Confidence 651 222111111445555555543332 2334667777777776552 2233444433321 0111110 1111
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhc--cC----CCC-C-c---cchHHHHHH
Q 001062 791 YSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGR--RK----DLS-S-H---EHIENVIIE 859 (1167)
Q Consensus 791 ~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~--~~----~~~-~-~---~~~~~~l~~ 859 (1167)
.++ ..++.++. +...+-..--..+-+++- ..+......|..+..++. .. +-+ + . ..++..+-+
T Consensus 679 ~sl-~iL~M~s~--s~~~Iv~~~~~~lv~igl---g~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~ 752 (1251)
T KOG0414|consen 679 GSL-IILGMASR--SKPSIVLANLDLLVQIGL---GEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEK 752 (1251)
T ss_pred cce-eehhhhhc--cChhhhhhhhHHHHHhcc---CcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHH
Confidence 000 11121111 111111100011112211 122232233333333321 11 000 1 1 124444444
Q ss_pred hcCC----Ch---hhHHHHHHHHHHhhhhcCcccchHHHHHHhh---------------cccchhH--H--------HHH
Q 001062 860 SFQS----PF---EEIKSAASYALGNIAVGNLSKFLPFILDQID---------------NQQKKQY--L--------LLH 907 (1167)
Q Consensus 860 ~l~~----~~---e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~---------------~~~~~~~--~--------~l~ 907 (1167)
++.. ++ ..+...|..++-.++. .|...-..|++... .++...+ + ++.
T Consensus 753 l~~~~~~~~d~~~~~~~e~ais~Iy~is~-~Pe~la~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~lif 831 (1251)
T KOG0414|consen 753 LLFFEFMKADDDWFGVAEVAISAIYSISM-LPEVLATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLIF 831 (1251)
T ss_pred HHhhccCCcchHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHHH
Confidence 4322 22 3355556566655543 23333333333221 0111111 1 222
Q ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHhh-----------ccCCccchh--------------------hHHHHHhhh
Q 001062 908 SLKEVIVRQSVDKAEFQDSSVEKILNLLFNH-----------CESEEEGVR--------------------NVVAECLGK 956 (1167)
Q Consensus 908 aLkei~~~~~~~~~~~l~~~~~~i~~~L~~~-----------~~~~~e~vr--------------------~~aa~~Lg~ 956 (1167)
.+++++...- -|++......++- -.+..+++. +..++.+.-
T Consensus 832 ~vg~vAikql--------vyiE~~i~~~~kRr~~~~~~~e~k~~N~~e~~s~t~~~~~~~~e~dlig~tseDd~~d~i~~ 903 (1251)
T KOG0414|consen 832 IVGDVAIKQL--------VYIEVCISKEFKRRKIKTELEEKKDKNQRENLSNTQRETQFTVELDLIGGTSEDDLADLISG 903 (1251)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhcccCchhhhccccccccCCccccccCCCcchhHHHHHHH
Confidence 2333322110 1333333211110 000001100 112222222
Q ss_pred cc----ccCc----ccchHHHHHhhcC----CChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhcc-CCChHHHH
Q 001062 957 IA----LIEP----AKLVPALKVRTTS----SAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIK-DQDRHVRR 1023 (1167)
Q Consensus 957 l~----~~~~----~~~lp~l~~~~~~----~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~-d~d~~vr~ 1023 (1167)
+| ...+ ..|.|.+.+.++. .+|..+..+..++.-++.-.. .+-...++-|+..+. .+++-||.
T Consensus 904 icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRs 979 (1251)
T KOG0414|consen 904 ICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRS 979 (1251)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeee
Confidence 22 1111 2677888887753 357778888888876665432 244456777888887 57788999
Q ss_pred HHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhhccccCCccc
Q 001062 1024 AAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSS 1103 (1167)
Q Consensus 1024 ~a~~~L~~~a~~~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~~~~~~~~~~ 1103 (1167)
.++.+++-++-..|.++-|+- +.||..+. |....+||+|+-++..|+-.. .+-++-
T Consensus 980 N~VvalgDlav~fpnlie~~T----~~Ly~rL~------------------D~~~~vRkta~lvlshLILnd--miKVKG 1035 (1251)
T KOG0414|consen 980 NLVVALGDLAVRFPNLIEPWT----EHLYRRLR------------------DESPSVRKTALLVLSHLILND--MIKVKG 1035 (1251)
T ss_pred cchheccchhhhcccccchhh----HHHHHHhc------------------CccHHHHHHHHHHHHHHHHhh--hhHhcc
Confidence 999999999999998766554 55666664 566789999999999987663 234444
Q ss_pred chHHHHhcccCC-cchhHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Q 001062 1104 FIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLADFLHLMYTI 1149 (1167)
Q Consensus 1104 ~~~~~~~~gl~D-~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~~ 1149 (1167)
.+ .-....+.| +..|+-+|-.....|++.. ..+.+.|..++..|
T Consensus 1036 ql-~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdil~~L 1080 (1251)
T KOG0414|consen 1036 QL-SEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDILSRL 1080 (1251)
T ss_pred cH-HHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHHHHhh
Confidence 45 445567889 8999999999999998877 66777776666443
No 126
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.25 E-value=0.00029 Score=55.63 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 001062 225 EMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESF 281 (1167)
Q Consensus 225 ~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l 281 (1167)
.+|..++.++|.++...+..+.||++.++|.+...+++ ++++||..|..+|+.+
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d---~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD---DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS---SSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999988 7789999999998754
No 127
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.24 E-value=0.37 Score=58.05 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhH
Q 001062 525 YKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACL 604 (1167)
Q Consensus 525 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l 604 (1167)
..+++.+.-+++.+|-.- ....++++|.+.+-|+- ..+..+|.+-+-++|.++.++. ...+..+
T Consensus 945 ~~vra~~vvTlakmcLah-----------~~LaKr~~P~lvkeLe~-~~~~aiRnNiV~am~D~C~~YT----am~d~Yi 1008 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAH-----------DRLAKRLMPMLVKELEY-NTAHAIRNNIVLAMGDICSSYT----AMTDRYI 1008 (1529)
T ss_pred hHHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHh-hhHHHHhcceeeeehhhHHHHH----HHHHHhh
Confidence 468888888898887542 23567788888888864 3457889999999999887643 3456678
Q ss_pred HHHHHhhcCc--hhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001062 605 PVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVA 672 (1167)
Q Consensus 605 ~~L~~~L~~e--~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~ 672 (1167)
|.+..+|.+. .+|..++-.+.++... ++-+|=..++-.+.-.+-+.++.+|.-+=-+++.++..
T Consensus 1009 P~I~~~L~Dp~~iVRrqt~ilL~rLLq~----~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1009 PMIAASLCDPSVIVRRQTIILLARLLQF----GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhh----hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 8888888765 3688888888887632 23445455544444445567888888888888888764
No 128
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.76 Score=54.18 Aligned_cols=271 Identities=15% Similarity=0.145 Sum_probs=145.4
Q ss_pred HHHHHHhhhhccCCCCCccchHHHHHHhcCCC-hhhHHHHHHHHHHhhhhcCccc-chHHHHHHhhcccch-hHHHHHHH
Q 001062 833 LALLCLGEIGRRKDLSSHEHIENVIIESFQSP-FEEIKSAASYALGNIAVGNLSK-FLPFILDQIDNQQKK-QYLLLHSL 909 (1167)
Q Consensus 833 lal~~Lgei~~~~~~~~~~~~~~~l~~~l~~~-~e~vr~aaa~aLG~l~~~~~~~-~lp~l~~~l~~~~~~-~~~~l~aL 909 (1167)
-++++||=|-.+.+ .+..+.+...+++. +|.||--+...||-.+.|.... ....+-+.+..|... -..+-.++
T Consensus 398 GalyAlGLIhA~hG----~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~M 473 (929)
T KOG2062|consen 398 GALYALGLIHANHG----RGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAM 473 (929)
T ss_pred chhhhhhccccCcC----ccHHHHHHHHHHhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhh
Confidence 46667776644422 34677777777755 5777877766666655554332 333333333332221 12222333
Q ss_pred HHHHhhccccchhhhhHHHHHHHHHHHhhccC-CccchhhHHHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHH
Q 001062 910 KEVIVRQSVDKAEFQDSSVEKILNLLFNHCES-EEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAI 988 (1167)
Q Consensus 910 kei~~~~~~~~~~~l~~~~~~i~~~L~~~~~~-~~e~vr~~aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~l 988 (1167)
+=++..+.. .+.+..++...++ ..|.+.+-.+--+.-...+.-+..=|.+.+++.+.+|-.|+.-+-++
T Consensus 474 Gl~mlGt~~----------~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~ 543 (929)
T KOG2062|consen 474 GLLMLGTAN----------QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTL 543 (929)
T ss_pred hhHhhCcCc----------HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHH
Confidence 333332221 1122223322222 22444443333333222233346668888999988999998877665
Q ss_pred HHHhccCChhhhhhhhHhHHHHHh-hccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhccccceeeeec
Q 001062 989 KYSIVERPEKIDEIIFPEISSFLM-LIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDL 1067 (1167)
Q Consensus 989 k~~~~~~~~~~~~~l~~~i~~~l~-~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~ 1067 (1167)
.-....++. . ..+.++|. ..+|.|.+|||+|+.+|+-+.-..|+.. |....-+...
T Consensus 544 alAy~GTgn--n----kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~--------~s~V~lLses--------- 600 (929)
T KOG2062|consen 544 ALAYVGTGN--N----KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL--------PSTVSLLSES--------- 600 (929)
T ss_pred HHHHhccCc--h----hhHHHhhcccccccchHHHHHHHHHheeeEecChhhc--------hHHHHHHhhh---------
Confidence 533332221 1 34666776 5889999999999999999988888843 3222222210
Q ss_pred cCceeecccChhHHHHHHHHHHHHHhhccccCCcccchHHHHhcccCC-cchhHHHHHHHHHHHHhhCchHHHHHHHHHH
Q 001062 1068 GPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLADFLHLM 1146 (1167)
Q Consensus 1068 gp~k~~~d~gle~Rk~a~~~~~~ll~~~~~~~~~~~~~~~~~~~gl~D-~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~ 1146 (1167)
-...+|=-| -..|==.|.+.- ..+-+ +.+....+| ..=||.-++..+..+.-++-+...++...+-
T Consensus 601 --------~N~HVRyGa---A~ALGIaCAGtG-~~eAi-~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~fr 667 (929)
T KOG2062|consen 601 --------YNPHVRYGA---AMALGIACAGTG-LKEAI-NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFR 667 (929)
T ss_pred --------cChhhhhhH---HHHHhhhhcCCC-cHHHH-HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHH
Confidence 001223111 112222232222 22223 456666778 6668888888888877777666666666666
Q ss_pred HHHHHHh
Q 001062 1147 YTIITFS 1153 (1167)
Q Consensus 1147 ~~~~~~~ 1153 (1167)
..+.+.+
T Consensus 668 k~l~kvI 674 (929)
T KOG2062|consen 668 KQLEKVI 674 (929)
T ss_pred HHHHHHh
Confidence 6655544
No 129
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.22 E-value=0.09 Score=64.02 Aligned_cols=342 Identities=16% Similarity=0.221 Sum_probs=179.1
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChh-hH--HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc-hh
Q 001062 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP-RV--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS-SL 120 (1167)
Q Consensus 45 ~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~-~~--~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~-~~ 120 (1167)
+.+++.|.++|+..|.++.-.++.+|..|+-.-..+ .+ ..++++|...+.+++...+..+...|.+ ++.+ ..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~N----LSfd~~~ 364 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFN----LSFDPEL 364 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHH----hCcCHHH
Confidence 556888999999999999999999999888322111 11 2468888888877765555554444443 3332 22
Q ss_pred HHH-HHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHH--hccchh--HHHHHHHHHHhhhhcCChHHHHHHHHHHHH
Q 001062 121 AQS-IHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK--FGNLMS--NDHERLLSALLPQLSANQASVRKKSVSCIA 195 (1167)
Q Consensus 121 ~~~-~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~--~g~~l~--~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~ 195 (1167)
... +-..++|.|...|.++ ..+.-++.+|..+... .-..+. ...+.+++.++. +++..+...++..+-
T Consensus 365 R~~mV~~GlIPkLv~LL~d~----~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~---~~~~~v~~eliaL~i 437 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLKDP----NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLE---NSEEEVQLELIALLI 437 (708)
T ss_pred HHHHHHCCCcHHHHHHhCCC----chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHh---CCCccccHHHHHHHH
Confidence 222 2234778888888753 4555566666655432 222222 333444444433 344455555555555
Q ss_pred HHHhhcCHHH-H--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh---hhhcchhhhHHHHHHHhhhcCCCChh
Q 001062 196 SLASSLSDDL-L--AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY---RFGPHLGDTVPVLIDYCTSASENDEE 269 (1167)
Q Consensus 196 ~l~~~~~~~~-~--~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~p~l~~lvp~l~~~l~~~~e~~~e 269 (1167)
.++..-.... + +..++.++....+... ...+.++-.++...|. .|.+|+..++.. +... ++++
T Consensus 438 NLa~~~rnaqlm~~g~gL~~L~~ra~~~~D-----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~----v~~~--~~ee 506 (708)
T PF05804_consen 438 NLALNKRNAQLMCEGNGLQSLMKRALKTRD-----PLLLKLIRNISQHDGPLKELFVDFIGDLAKI----VSSG--DSEE 506 (708)
T ss_pred HHhcCHHHHHHHHhcCcHHHHHHHHHhccc-----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----hhcC--CcHH
Confidence 5554332221 1 1123333333222111 1234556666655432 355555554443 3331 4455
Q ss_pred HHHHHHHHHHHHHHhCCccccccHH--HHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHH
Q 001062 270 LREYSLQALESFLLRCPRDISSYCD--EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRR 347 (1167)
Q Consensus 270 ~re~al~~l~~l~~~~~~~~~~~l~--~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~ 347 (1167)
..-.|+.++.++... ..+...++. .+++.+.+.++ |..+. | .+--
T Consensus 507 ~~vE~LGiLaNL~~~-~ld~~~ll~~~~llp~L~~~L~--~g~~~--------------------------d----Dl~L 553 (708)
T PF05804_consen 507 FVVECLGILANLTIP-DLDWAQLLQEYNLLPWLKDLLK--PGASE--------------------------D----DLLL 553 (708)
T ss_pred HHHHHHHHHHhcccC-CcCHHHHHHhCCHHHHHHHHhC--CCCCC--------------------------h----HHHH
Confidence 544555555554321 112333343 35566666554 32110 0 1333
Q ss_pred HHHHHHHHHHhcCChhhHH-HHHHHhhHHHhhhccC--ChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH
Q 001062 348 AAAKCLAALIVSRPEMLSK-LYEEACPKLIDRFKER--EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV 424 (1167)
Q Consensus 348 aA~~~l~~li~~~~~~l~~-~~~~i~p~L~~~l~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~ 424 (1167)
.++..+|++.. .++.-.. .-..+++.|++.++.+ +++....++.+|..++.+.... ..+-..
T Consensus 554 E~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------~~ll~~- 618 (708)
T PF05804_consen 554 EVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------EVLLKE- 618 (708)
T ss_pred HHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------HHHHhc-
Confidence 45556665543 2211111 1234556666665333 2445567777888887764210 122111
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHh
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVV 456 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~ 456 (1167)
..+...+...+.+++..+|..|=.+|.-+++.
T Consensus 619 ~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 619 TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 45778889999999999999887777777654
No 130
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.21 E-value=0.025 Score=64.74 Aligned_cols=152 Identities=16% Similarity=0.084 Sum_probs=100.4
Q ss_pred HHHHHHHHh-cCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHH
Q 001062 5 QMAAILEKI-TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1167)
Q Consensus 5 ~i~~ll~~~-~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~ 83 (1167)
.+..++..+ .+.|+.+|+.|.--|.. .+. ...++.|+..|.|+++.||..+.+.||.+ +. .
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~--------~~~---~~~~~~L~~~L~d~~~~vr~aaa~ALg~i----~~---~ 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLA--------QED---ALDLRSVLAVLQAGPEGLCAGIQAALGWL----GG---R 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhc--------cCC---hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----Cc---h
Confidence 344556666 46778888877655531 111 12488999999999999999999999854 22 3
Q ss_pred HHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 001062 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1167)
Q Consensus 84 ~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~ 163 (1167)
...+.|...+.++++.+|..+.-++... .. .-.+.+...|+++ ++.||..++.+|+.+-.
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r----~~---------~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~----- 176 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAH----RH---------DPGPALEAALTHE--DALVRAAALRALGELPR----- 176 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhh----cc---------ChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc-----
Confidence 4455666666777777776555444431 11 1123455555544 68999999999987642
Q ss_pred hhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 001062 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1167)
Q Consensus 164 l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1167)
...++.+...+.+.++.||..|+.+++.++.
T Consensus 177 -----~~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 177 -----RLSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred -----ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 2233335566888999999999999977753
No 131
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.18 E-value=0.00053 Score=46.45 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhhhh
Q 001062 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKK 76 (1167)
Q Consensus 47 i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~ 76 (1167)
+++.++++++||+++||.+|++||+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999865
No 132
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.14 E-value=0.02 Score=70.52 Aligned_cols=235 Identities=14% Similarity=0.118 Sum_probs=153.2
Q ss_pred HHHHHHHHHhc-CCCChhHHHHHHHHHHHhhhhcChhh---HHHHHHHHHHHhcC-----CC------------------
Q 001062 45 VKLSNIVVQQL-DDVAGDVSGLAVKCLAPLVKKVSEPR---VVEMTDKLCIKLLN-----GK------------------ 97 (1167)
Q Consensus 45 ~~i~~~ll~~L-~d~~~~Vr~~A~~~l~~l~~~~~~~~---~~~l~~~L~~~~~~-----~~------------------ 97 (1167)
..++..+++.+ .+.|..+|..|.+++..+...+.+.. ...++.+.|..... +.
T Consensus 647 ~p~I~plm~tik~e~n~~~q~~~~e~~~~L~~~~~~r~p~~~~k~~k~~c~~~~~~p~~~p~~~a~~~~~~~~~~~~~~s 726 (1549)
T KOG0392|consen 647 NPIIRPLMETIKKEENAMLQPAAAEALAYLIQQCKDRKPNPYGKPLKKACESECVDPSRAPGLGASIRSIHPMVDPLIND 726 (1549)
T ss_pred hhHHHHHHHHHHhhhHhHhHHHHHHHHHHHHHHHhccCCCccccHHHHHHhhhcCCcccCCccccccccccccccccccc
Confidence 33344444444 47778899999999998887654322 22344444432210 00
Q ss_pred -------------c-------chhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 001062 98 -------------D-------QHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1167)
Q Consensus 98 -------------~-------~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~ 157 (1167)
+ -.|.++-.+|+.++..+..+ +... ...++.-|+..|+......+--...++++..+.
T Consensus 727 ~~~~~~~~~~~g~eea~~~~~~errgael~L~~l~~~fg~s-l~~k-lp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~ 804 (1549)
T KOG0392|consen 727 YTRMVASNLAPGLEEAQALISFERRGAELFLKILSKMFGGS-LAAK-LPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLA 804 (1549)
T ss_pred hhhhhccccCcchhhhhhhHHHHhhhHHHHHHHHHHHhhHH-HHHh-cchHHHHHHHhhhccCCCCcchhhhHHHHHHHH
Confidence 0 01456666777777665552 2221 122333344444432212223344556666666
Q ss_pred HHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001062 158 HKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1167)
Q Consensus 158 ~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l 237 (1167)
..+|..+.+ .-...+.++.++.+..+.+|-++++|++.+......+....++..++..+.+.. +...|..+...+..+
T Consensus 805 ~~m~s~l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~-~~~~r~~a~e~~~~l 882 (1549)
T KOG0392|consen 805 PLMHSFLHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLD-KFVRRQGADELIELL 882 (1549)
T ss_pred Hhhhhhhhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh-hHhhhhhHHHHHHHH
Confidence 666766655 446778888899999999999999999999988877765555555555554432 234566777888888
Q ss_pred HHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC
Q 001062 238 SRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1167)
Q Consensus 238 ~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~ 286 (1167)
.......+.||.+-++|.++..+.+ ..+.+|+++-+++..++...|
T Consensus 883 ~~~l~~~l~~~~~Llv~pllr~msd---~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 883 DAVLMVGLVPYNPLLVVPLLRRMSD---QIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred HHhhcccccccceeehhhhhccccc---chHHHHHHHHHHHHHHhcccc
Confidence 8888888999999999999999888 778899999999998887665
No 133
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.14 E-value=0.0084 Score=59.77 Aligned_cols=161 Identities=24% Similarity=0.312 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHhc-CChhhHHHHHHHhhH-----------HHhh-hccCChhHHHHHHHHHHHHHHhhCCCCCCccC
Q 001062 344 KVRRAAAKCLAALIVS-RPEMLSKLYEEACPK-----------LIDR-FKEREENVKMDVFNTFIELVRQTGNVTKGQID 410 (1167)
Q Consensus 344 ~vR~aA~~~l~~li~~-~~~~l~~~~~~i~p~-----------L~~~-l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~ 410 (1167)
|||.+|..||.++++. .+..+..+|..++|. |+.. ++|+++.||..+..++..+++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk-------- 72 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSK-------- 72 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH--------
Confidence 6899999999999998 667777889888873 3333 378888888888888888776431
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHH
Q 001062 411 NNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEAL 490 (1167)
Q Consensus 411 ~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al 490 (1167)
..|. . -.+ .+.+...+.-|+ . .+..-+.++-..+..+|.... +..+....+
T Consensus 73 -------~~L~-------~-----Ae~--~~~~~~sFtslS---~----tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~l 123 (182)
T PF13251_consen 73 -------PFLA-------Q-----AEE--SKGPSGSFTSLS---S----TLASMIMELHRGLLLALQAEK-SPPVLTQLL 123 (182)
T ss_pred -------HHHH-------H-----HHh--cCCCCCCcccHH---H----HHHHHHHHHHHHHHHHHhccc-ccHHHHHHH
Confidence 0110 0 000 001111111110 0 011113333334445554432 345666788
Q ss_pred HHHHHHhccCCCCchhh-hhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 001062 491 TFTRLVLSSHSPPVFHP-YIKALSSPVLAAVGERYYKVTAEALRVCGELVRV 541 (1167)
Q Consensus 491 ~~l~~l~~~~~~~~~~~-~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~ 541 (1167)
.++..++.+..-+.+.+ ++..++..+...+.+.+..++..++.++|.++..
T Consensus 124 K~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 124 KCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 88888888765555554 7788888888888888899999999999998754
No 134
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.11 E-value=0.0037 Score=55.05 Aligned_cols=86 Identities=22% Similarity=0.211 Sum_probs=66.3
Q ss_pred HHHHHHHh-cCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 6 MAAILEKI-TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 6 i~~ll~~~-~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
|..+++.+ +++|+.+|..|...|.+ +. .+++++.++..++|+++.||..|+..++.+- -..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~--------~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE--------LG---DPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC--------CT---HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH--------cC---CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHH
Confidence 45678888 89999999999999872 21 3477899999999999999999999999773 245
Q ss_pred HHHHHHHHhcCCCcc-hhcHHHHHHH
Q 001062 85 MTDKLCIKLLNGKDQ-HRDIASIALK 109 (1167)
Q Consensus 85 l~~~L~~~~~~~~~~-~r~~a~~aL~ 109 (1167)
.++.|...+.++++. +|..+..+|.
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 677777777765544 5777777763
No 135
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.09 E-value=0.0057 Score=60.31 Aligned_cols=113 Identities=20% Similarity=0.322 Sum_probs=87.9
Q ss_pred HHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHH------------------------------------HHH-H
Q 001062 167 DHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDD------------------------------------LLA-K 208 (1167)
Q Consensus 167 ~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~------------------------------------~~~-~ 208 (1167)
.+|.+++.++..+++++ +.+|+.++.++|.+++.-+-. ++. -
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~v 86 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPTV 86 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHHH
Confidence 57899999999998875 599999999999998643221 111 1
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 001062 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1167)
Q Consensus 209 l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~ 283 (1167)
.+..++..++++.- ...+...++++..+.+..+.+..||++.++|.+++.+.. .++..||..++-+..++.
T Consensus 87 vi~~L~~iL~D~sL-s~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~---~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 87 VINALMRILRDPSL-SSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT---CPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 24455555666654 345667899999999998888899999999999999987 556899999988887775
No 136
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.08 E-value=0.016 Score=57.70 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhc
Q 001062 124 IHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN-LMSNDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSL 201 (1167)
Q Consensus 124 ~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~-~l~~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~ 201 (1167)
..+++..++.+.|+++ ++..|..++-++..+++..|. .|..+....+..+++.++.+++ .+++.++.+++.+....
T Consensus 22 ~l~~l~~ri~~LL~s~--~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSK--SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHhCCC--ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4566666777777665 578899999999999999854 4557888888889999988766 88888888887665433
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 001062 202 SDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESF 281 (1167)
Q Consensus 202 ~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l 281 (1167)
.+ -+ +-.|+. ..|+++.+++.+++.+++ ....+.++.++..+
T Consensus 100 ~~----------------~p--~l~Rei---------------~tp~l~~~i~~ll~l~~~-----~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 100 RG----------------KP--TLTREI---------------ATPNLPKFIQSLLQLLQD-----SSCPETALDALATL 141 (165)
T ss_pred cC----------------CC--chHHHH---------------hhccHHHHHHHHHHHHhc-----cccHHHHHHHHHHH
Confidence 22 11 112321 478899999999987653 35677899999999
Q ss_pred HHhCCccccccHHHHHHHHHHhh
Q 001062 282 LLRCPRDISSYCDEILHLTLEYL 304 (1167)
Q Consensus 282 ~~~~~~~~~~~l~~ii~~~~~~l 304 (1167)
+.+.|.-++||..++-..+..++
T Consensus 142 l~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 142 LPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred HHHCCccccchHHHHHHHHHHHh
Confidence 99999999999999988887765
No 137
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.03 E-value=0.1 Score=61.08 Aligned_cols=294 Identities=18% Similarity=0.232 Sum_probs=155.0
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHH
Q 001062 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1167)
Q Consensus 343 w~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~ 422 (1167)
-++++-|++.+..+...+|+.- +..+..+++...|.+..||..++..+-.+++.. .+
T Consensus 36 ~k~K~Laaq~I~kffk~FP~l~----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-------------------~~ 92 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPDLQ----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-------------------PE 92 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GGGH----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---------------------T
T ss_pred HHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-------------------HH
Confidence 4889999999999999999644 344455556677889999999999988777643 35
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCC
Q 001062 423 EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSP 502 (1167)
Q Consensus 423 ~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~ 502 (1167)
+++.+...|.++|...++.....+=..|.++...-|... +..++..|... ...+..+|..++.++..=+....+
T Consensus 93 ~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t---L~~lf~~i~~~---~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT---LTGLFSQIESS---KSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHH------HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhc---ccCchHHHHHHHHHHHHHHhhCcH
Confidence 778899999999987766555555555556655444322 33344333321 112456899999999887776666
Q ss_pred Cchh--hhh-HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhh-c---CCCCH
Q 001062 503 PVFH--PYI-KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLT-N---QDQDQ 575 (1167)
Q Consensus 503 ~~~~--~~l-~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~-~---~d~~~ 575 (1167)
+.+. .-. ..++..+.+.++| |..+=+..+-+++..+.--. ...-.+-.+.+++.+.+... + ...|.
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~D----VTaeEF~l~m~lL~~lk~~~---~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~ 239 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQD----VTAEEFELFMSLLKSLKIYG---GKQTIEGRQELVDIIEEQADLDQPFDPSDP 239 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT------HHHHHHHHHHHHTSGG------GSSHHHHHHHHHHHHHHHTTTS---SSSH
T ss_pred HHhhchHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHhCcccc---ccCChHHHHHHHHHHHHHhccCCCCCCcCH
Confidence 6666 233 3455566666665 33333444444444332100 00112345677777765542 1 12345
Q ss_pred HHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhh----c--CchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q 001062 576 EVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM----G--NEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTA 649 (1167)
Q Consensus 576 ~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L----~--~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~ 649 (1167)
+.-.+.+.|+-.-+.-+.... .-..++..+++.+ . .+..+..-++++.+++......+....++.+...|..
T Consensus 240 e~Idrli~C~~~Alp~fs~~v--~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ 317 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGV--SSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKK 317 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHhcCCC--ChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHH
Confidence 666677777776432222111 1233333333321 1 3445677788888887544333445666666666655
Q ss_pred HHH--HhhHHHHHHHHHHHHHHHHHhC
Q 001062 650 FLR--KANRALRQATLGTMNSLVVAYG 674 (1167)
Q Consensus 650 ~L~--~~~~~lr~~al~~L~~l~~~~~ 674 (1167)
++. +....+.-.-++||-......+
T Consensus 318 ymP~~~~~~~l~fs~vEcLL~afh~La 344 (556)
T PF05918_consen 318 YMPSKKTEPKLQFSYVECLLYAFHQLA 344 (556)
T ss_dssp TS----------HHHHHHHHHHHHHHH
T ss_pred hCCCCCCCCcccchHhhHHHHHHHHHh
Confidence 543 2345566666777665555443
No 138
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.99 E-value=0.51 Score=53.58 Aligned_cols=210 Identities=14% Similarity=0.206 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHHHHHhhh--hh--hcchhhhHH
Q 001062 185 SVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSKGA---KPEMIRTNIQMVGALSRAVGY--RF--GPHLGDTVP 254 (1167)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~~~---~~~~r~~~~~~l~~l~~~~~~--~~--~p~l~~lvp 254 (1167)
.+|+.++..+...+.-..+. ++..++..+.+.+.+-.. .+.....+++.++++++.... -| .|++..|+.
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 78888888888877665443 244455555555543211 134455678888888775433 23 467777766
Q ss_pred HH-HHHhhh--c------------------CCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCC
Q 001062 255 VL-IDYCTS--A------------------SENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDN 313 (1167)
Q Consensus 255 ~l-~~~l~~--~------------------~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~ 313 (1167)
.+ +-.+.- . +.+.+.-|.+|...+..++.+.++.+.+.+...+..++.-..-+|+
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~---- 266 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPS---- 266 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT----
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCc----
Confidence 43 322221 0 0122235778899999998887666555555444443322111221
Q ss_pred CCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcC-----C--h-----hhHHHHHH-HhhHHHhhhc
Q 001062 314 MEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-----P--E-----MLSKLYEE-ACPKLIDRFK 380 (1167)
Q Consensus 314 ~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~-----~--~-----~l~~~~~~-i~p~L~~~l~ 380 (1167)
..|+-+.+|..+++++.... | + .+..+|.. ++|-|. .-.
T Consensus 267 ---------------------------~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~ 318 (370)
T PF08506_consen 267 ---------------------------NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDV 318 (370)
T ss_dssp ---------------------------T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS
T ss_pred ---------------------------ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccC
Confidence 35999999999999987643 1 1 13445544 557665 222
Q ss_pred cCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHH
Q 001062 381 EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKV 444 (1167)
Q Consensus 381 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~ 444 (1167)
...+-+|.++++.+...-++.. .+++..+++.+...|.+++.-++.
T Consensus 319 ~~~piLka~aik~~~~Fr~~l~------------------~~~l~~~~~~l~~~L~~~~~vv~t 364 (370)
T PF08506_consen 319 NSHPILKADAIKFLYTFRNQLP------------------KEQLLQIFPLLVNHLQSSSYVVHT 364 (370)
T ss_dssp -S-HHHHHHHHHHHHHHGGGS-------------------HHHHHHHHHHHHHHTTSS-HHHHH
T ss_pred CCCcchHHHHHHHHHHHHhhCC------------------HHHHHHHHHHHHHHhCCCCcchhh
Confidence 4556788888888877654432 457788888899999887765554
No 139
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.99 E-value=0.0035 Score=58.96 Aligned_cols=107 Identities=20% Similarity=0.298 Sum_probs=83.1
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HHH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhh
Q 001062 171 LLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLA-KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFG 246 (1167)
Q Consensus 171 l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~-~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 246 (1167)
+++.+.+.+.++++.+|+.++.+++.++...++. .+. .+++.++..+.+++ ...++.++.+++.++...+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED--EEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC--HHHHHHHHHHHHHHccCcHHHHH
Confidence 5666777788888899999999999999874333 233 67888888887753 58999999999999987654322
Q ss_pred cch-hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 001062 247 PHL-GDTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1167)
Q Consensus 247 p~l-~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~ 282 (1167)
.+. ..+++.+.+.+.+ .+.++|+.+++++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~---~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDS---SNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhc---CCHHHHHHHHHHHHHhh
Confidence 222 4589999999887 78899999999988775
No 140
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.97 E-value=0.0035 Score=58.95 Aligned_cols=110 Identities=11% Similarity=0.032 Sum_probs=85.3
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhh-hhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCch
Q 001062 427 IVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIG-SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF 505 (1167)
Q Consensus 427 l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~-~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~ 505 (1167)
+++.+.+.+.+.++++|..++.++..++...+......+. .++|.+.+.|.+. +..++..++.+++.+..... ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~-~~~ 84 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAGPE-DNK 84 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcH-HHH
Confidence 4556666777778899999999999998765555544455 8899999999876 56899999999999987532 222
Q ss_pred hhhh-HhhHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001062 506 HPYI-KALSSPVLAAVGERYYKVTAEALRVCGELV 539 (1167)
Q Consensus 506 ~~~l-~~ll~~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1167)
..+. ..+++.+.+.+++.+.+++..++.++..++
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2233 348999999999888999999999998875
No 141
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.95 E-value=0.12 Score=60.59 Aligned_cols=274 Identities=16% Similarity=0.159 Sum_probs=137.5
Q ss_pred HHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHH
Q 001062 9 ILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDK 88 (1167)
Q Consensus 9 ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~ 88 (1167)
+++..+. ++....+|.+-+-++.+ .-+...+.-++.++.+.+|.+..||.+|++-|..+++.- ++.+..+.+.
T Consensus 28 il~~~kg-~~k~K~Laaq~I~kffk-----~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDv 100 (556)
T PF05918_consen 28 ILDGVKG-SPKEKRLAAQFIPKFFK-----HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADV 100 (556)
T ss_dssp HHHGGGS--HHHHHHHHHHHHHHHC-----C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHH
T ss_pred HHHHccC-CHHHHHHHHHHHHHHHh-----hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHH
Confidence 3444443 34455556555555443 346788899999999999999999999999999887654 4568899999
Q ss_pred HHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhH--
Q 001062 89 LCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-- 166 (1167)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~-- 166 (1167)
|.+.+..++....++..-+|..++..-+.. ....+++.|.+. +..++.+|+.++..|.+=+...+..+..
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~-tL~~lf~~i~~~-------~~~de~~Re~~lkFl~~kl~~l~~~~~~p~ 172 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKG-TLTGLFSQIESS-------KSGDEQVRERALKFLREKLKPLKPELLTPQ 172 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHH----------HS-HHHHHHHHHHHHHHGGGS-TTTS---
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHhc-------ccCchHHHHHHHHHHHHHHhhCcHHHhhch
Confidence 999998777777888888888777544331 112222222211 1125779999999887766666554432
Q ss_pred -H-HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHh--hcC--CCChHHHHHHHHHHHHH
Q 001062 167 -D-HERLLSALLPQLSANQASVRKKSVSCIASLAS---SLSDDLLAKATIEVVRNL--RSK--GAKPEMIRTNIQMVGAL 237 (1167)
Q Consensus 167 -~-~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~---~~~~~~~~~l~~~l~~~l--~~~--~~~~~~r~~~~~~l~~l 237 (1167)
. ..-++..+.+.|.+=...==+..+..|.++-. .-+.+-.+.+++.+.... ..+ ..+.+.....++++..=
T Consensus 173 ~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~A 252 (556)
T PF05918_consen 173 KEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQA 252 (556)
T ss_dssp HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHh
Confidence 2 22233334444433111112233444444444 223334556666665443 111 11223322233332221
Q ss_pred HHHhhhhhhc--chhhhHHHHHHH----hhhcCCCChhHHHHHHHHHHHHHHhCCc-cccccHHHHHHHHHHhh
Q 001062 238 SRAVGYRFGP--HLGDTVPVLIDY----CTSASENDEELREYSLQALESFLLRCPR-DISSYCDEILHLTLEYL 304 (1167)
Q Consensus 238 ~~~~~~~~~p--~l~~lvp~l~~~----l~~~~e~~~e~re~al~~l~~l~~~~~~-~~~~~l~~ii~~~~~~l 304 (1167)
.| .|.+ +-..++.++..- +.+ -+++.+-.-+.++..++.+|+. +...+++.+++.++++|
T Consensus 253 ---lp-~fs~~v~Sskfv~y~~~kvlP~l~~---l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ym 319 (556)
T PF05918_consen 253 ---LP-FFSRGVSSSKFVNYMCEKVLPKLSD---LPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYM 319 (556)
T ss_dssp ---GG-G-BTTB--HHHHHHHHHHTCCCTT--------HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS
T ss_pred ---hH-HhcCCCChHHHHHHHHHHhcCChhh---CChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhC
Confidence 11 1111 112222222221 122 2334455567777777777763 34567777777777665
No 142
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=1.4 Score=51.76 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=84.6
Q ss_pred ChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCC
Q 001062 17 DKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG 96 (1167)
Q Consensus 17 d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~ 96 (1167)
.+-+=||+++-|.++ ..+..+.++..+.+-|.+.|+.-.+.|..|++.+..+= ..+.+-+.+...+.++
T Consensus 90 EKqIGYl~is~L~n~--------n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~~~DI~KlLvS~ 158 (938)
T KOG1077|consen 90 EKQIGYLFISLLLNE--------NSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAFADDIPKLLVSG 158 (938)
T ss_pred HHHHhHHHHHHHHhc--------chHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHhhhhhHHHHhCC
Confidence 344555555555432 13566777888888899999999999999999876431 1223333333444444
Q ss_pred C--cchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHH
Q 001062 97 K--DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDH 168 (1167)
Q Consensus 97 ~--~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~ 168 (1167)
+ +-+|.-|+.+|-.+....|.-.-...+.+ ++++.|++. +-.|...+..++..++++..+......
T Consensus 159 ~~~~~vkqkaALclL~L~r~spDl~~~~~W~~----riv~LL~D~--~~gv~ta~~sLi~~lvk~~p~~yk~~~ 226 (938)
T KOG1077|consen 159 SSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQ----RIVHLLDDQ--HMGVVTAATSLIEALVKKNPESYKTCL 226 (938)
T ss_pred cchHHHHHHHHHHHHHHHhcCccccChhhHHH----HHHHHhCcc--ccceeeehHHHHHHHHHcCCHHHhhhH
Confidence 3 34788999999999888665211112333 344445543 466777777778888877766544333
No 143
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.90 E-value=0.12 Score=59.36 Aligned_cols=208 Identities=10% Similarity=0.027 Sum_probs=121.8
Q ss_pred hhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 001062 372 CPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLR 451 (1167)
Q Consensus 372 ~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~ 451 (1167)
+..+++.+.+.++.||.++..+++.+= .+.....+...++++++.+|..++.+++
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-------------------------~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-------------------------GRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-------------------------chHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 455566777888888888888876541 1445556667777888888877765444
Q ss_pred HHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHH
Q 001062 452 ELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEA 531 (1167)
Q Consensus 452 ~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~a 531 (1167)
..- ..-.+.+...|+|. +..++.+++..++.+-.. ..+|.+...+.|.++.|+..|
T Consensus 143 ~r~-----------~~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA 198 (410)
T TIGR02270 143 AHR-----------HDPGPALEAALTHE--DALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAA 198 (410)
T ss_pred hhc-----------cChHHHHHHHhcCC--CHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHH
Confidence 311 11234555666655 467888888888776321 224455666788888888888
Q ss_pred HHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhh
Q 001062 532 LRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM 611 (1167)
Q Consensus 532 l~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L 611 (1167)
+..++.+ +.. .-.+.+..... ......+..+...++.. | -++.++.|...+
T Consensus 199 ~~al~~l----G~~-------------~A~~~l~~~~~--~~g~~~~~~l~~~lal~----~------~~~a~~~L~~ll 249 (410)
T TIGR02270 199 LEAGLLA----GSR-------------LAWGVCRRFQV--LEGGPHRQRLLVLLAVA----G------GPDAQAWLRELL 249 (410)
T ss_pred HHHHHHc----CCH-------------hHHHHHHHHHh--ccCccHHHHHHHHHHhC----C------chhHHHHHHHHh
Confidence 8887655 210 11122222122 12222333332222221 2 125666677767
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001062 612 GNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLV 670 (1167)
Q Consensus 612 ~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~ 670 (1167)
+++.+|..++.++|.+-.. ..++.|...+. +..++..|-+++..|.
T Consensus 250 ~d~~vr~~a~~AlG~lg~p-----------~av~~L~~~l~--d~~~aR~A~eA~~~It 295 (410)
T TIGR02270 250 QAAATRREALRAVGLVGDV-----------EAAPWCLEAMR--EPPWARLAGEAFSLIT 295 (410)
T ss_pred cChhhHHHHHHHHHHcCCc-----------chHHHHHHHhc--CcHHHHHHHHHHHHhh
Confidence 7777899999999977532 13333444333 3347888888887763
No 144
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=1.5 Score=51.88 Aligned_cols=334 Identities=14% Similarity=0.181 Sum_probs=176.8
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchh
Q 001062 171 LLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG 250 (1167)
Q Consensus 171 l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~ 250 (1167)
+-..+-+.|++|+.-+|...++-++. .-..+++++++|.+.+.+.+.+. -+|+.|+.++.+|.+. ...+-|-.|
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLck---LkE~ELlepl~p~IracleHrhs--YVRrNAilaifsIyk~-~~~L~pDap 173 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCK---LKEPELLEPLMPSIRACLEHRHS--YVRRNAILAIFSIYKN-FEHLIPDAP 173 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhh---cCcHHHhhhhHHHHHHHHhCcch--hhhhhhheeehhHHhh-hhhhcCChH
Confidence 34556677889988899887776554 44567889999999999988764 6899999999999886 334455556
Q ss_pred hhHHHHHHHhhhcCCCChhH------------HHHHHHHHHHHHHhCCccccccHHH-HHHHHHHhhccCCCCCCCCCCC
Q 001062 251 DTVPVLIDYCTSASENDEEL------------REYSLQALESFLLRCPRDISSYCDE-ILHLTLEYLSYDPNFTDNMEED 317 (1167)
Q Consensus 251 ~lvp~l~~~l~~~~e~~~e~------------re~al~~l~~l~~~~~~~~~~~l~~-ii~~~~~~l~~dp~~~~~~~~d 317 (1167)
+++...+..= .|+-= +|-|+.-+...+...|. +.+.+.. +++.+.+...-+|+
T Consensus 174 eLi~~fL~~e-----~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~-~~~~LqlViVE~Irkv~~~~p~-------- 239 (948)
T KOG1058|consen 174 ELIESFLLTE-----QDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPS-FNDSLQLVIVELIRKVCLANPA-------- 239 (948)
T ss_pred HHHHHHHHhc-----cCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccC-ccHHHHHHHHHHHHHHHhcCHH--------
Confidence 6655554321 12211 12244444433333331 1111111 11222221111111
Q ss_pred CcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhh--------------HHHHHHHhhHHHhhh-ccC
Q 001062 318 SDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEML--------------SKLYEEACPKLIDRF-KER 382 (1167)
Q Consensus 318 ~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l--------------~~~~~~i~p~L~~~l-~d~ 382 (1167)
.|.--++|+-.++.+..... ...+......+++.+ ++.
T Consensus 240 ---------------------------~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kes 292 (948)
T KOG1058|consen 240 ---------------------------EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKES 292 (948)
T ss_pred ---------------------------HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhcc
Confidence 01111222222222111000 001111111111111 222
Q ss_pred ChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhH
Q 001062 383 EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLA 462 (1167)
Q Consensus 383 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~ 462 (1167)
.-+|+.-++.-+.++-. .-+..+..++--+.+.|..++..+|.-++.+.-.|+...
T Consensus 293 dnnvklIvldrl~~l~~-------------------~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr----- 348 (948)
T KOG1058|consen 293 DNNVKLIVLDRLSELKA-------------------LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----- 348 (948)
T ss_pred CcchhhhhHHHHHHHhh-------------------hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc-----
Confidence 23333222222222210 012344566666777888888899999998877777643
Q ss_pred hhhhhhHHHHHHhcccCC-----CCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHH
Q 001062 463 DHIGSLIPGIEKSLNDKS-----STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE 537 (1167)
Q Consensus 463 ~~l~~l~~~l~~~l~d~~-----~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~ 537 (1167)
.+.+++..+.+-+.+.. .+...|..-...+..... .|..+-..++|.++..+.|.+..-....+..+.+
T Consensus 349 -Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav-----~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE 422 (948)
T KOG1058|consen 349 -NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV-----KFPEVAATVVSLLLDFISDSNEAAASDVLMFVRE 422 (948)
T ss_pred -cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh-----cChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 25555666655554321 122345554444554432 4556778899999999999988888888888887
Q ss_pred HHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 001062 538 LVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 593 (1167)
Q Consensus 538 l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g 593 (1167)
.++.+... =..++..+++.+. .-.+.++...|++.+|+.+...+
T Consensus 423 ~iek~p~L-----------r~~ii~~l~~~~~-~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 423 AIEKFPNL-----------RASIIEKLLETFP-QIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHhCchH-----------HHHHHHHHHHhhh-hhcccccchhHHHHHHHHHhhhH
Confidence 77654321 1233333333332 12245667888999998876543
No 145
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.87 E-value=0.015 Score=58.09 Aligned_cols=152 Identities=26% Similarity=0.280 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHh-CCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHH
Q 001062 270 LREYSLQALESFLLR-CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRA 348 (1167)
Q Consensus 270 ~re~al~~l~~l~~~-~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~a 348 (1167)
+|..|+.++..++.. -++.+..|++.+++-. .....++-. -.+. .=-.|.+-|+|.+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~--~~~~~~~~~-------sLlt-------------~il~Dp~~kvR~a 59 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDS--VLQGRPATP-------SLLT-------------CILKDPSPKVRAA 59 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCC--CCcCCCCCc-------chhH-------------HHHcCCchhHHHH
Confidence 688999999999999 5667888888777633 110000000 0000 0002345699999
Q ss_pred HHHHHHHHHhcCChhh-------------HHH-------HHHHhhHHHhhh-ccCChhHHHHHHHHHHHHHHhhCCCCCC
Q 001062 349 AAKCLAALIVSRPEML-------------SKL-------YEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKG 407 (1167)
Q Consensus 349 A~~~l~~li~~~~~~l-------------~~~-------~~~i~p~L~~~l-~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 407 (1167)
|+.++.+++.+....+ ..+ ..++=-.|+..+ .|.+..+...+++++..++..+.
T Consensus 60 A~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tP----- 134 (182)
T PF13251_consen 60 AASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATP----- 134 (182)
T ss_pred HHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCC-----
Confidence 9999999988642111 111 111112344444 57777888899999999987763
Q ss_pred ccCCCCCchHHHH-HHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhc
Q 001062 408 QIDNNELNPRWLL-KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL 457 (1167)
Q Consensus 408 ~~~~~~~~p~~~l-~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~ 457 (1167)
...+ ...++.++..+...+.+.+..++..++.+++.+....
T Consensus 135 ---------Y~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 135 ---------YHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred ---------hhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 2223 3577888999999998889999999999999887654
No 146
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.87 E-value=0.0044 Score=54.56 Aligned_cols=87 Identities=24% Similarity=0.211 Sum_probs=67.2
Q ss_pred HHHHHHhc-CCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHH
Q 001062 48 SNIVVQQL-DDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1167)
Q Consensus 48 ~~~ll~~L-~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~ 126 (1167)
++.|++.| +|+++.||..|+++|+.+ .. +..++.|...+.++++.+|..++.+|+.+= -+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------------~~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----GD---PEAIPALIELLKDEDPMVRRAAARALGRIG------------DP 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----TH---HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----CC---HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CH
Confidence 46788888 899999999999999944 22 366778888888888899999999998531 14
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHHHH
Q 001062 127 SLTPQLTKGITLKDMNTEIRCECLDILC 154 (1167)
Q Consensus 127 ~i~p~Ll~~l~~~~~~~~v~~~~~~~L~ 154 (1167)
..+|.|.+.+.+++ ++.+|..++..|+
T Consensus 62 ~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 56777888777654 5778999988775
No 147
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.84 E-value=1.4 Score=50.51 Aligned_cols=142 Identities=12% Similarity=0.143 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhccC-ChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC
Q 001062 423 EVSKIVKSINRQLREK-SIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1167)
Q Consensus 423 ~~~~l~~~l~~~L~~~-~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1167)
.+..++..+...|.++ ..+.+..+..++..+++..|+.-... +..++..+.|.. ...-+...++-+=+ .+
T Consensus 409 k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra----Le~LC~fIEDce----y~~I~vrIL~iLG~-Eg 479 (898)
T COG5240 409 KKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA----LEVLCTFIEDCE----YHQITVRILGILGR-EG 479 (898)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH----HHHHHHHHhhcc----hhHHHHHHHHHhcc-cC
Confidence 3345555555555433 34566677777777777766654333 344444445542 12222333333322 23
Q ss_pred CCchhh--hhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHH
Q 001062 502 PPVFHP--YIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKE 579 (1167)
Q Consensus 502 ~~~~~~--~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~ 579 (1167)
|..-.| |+..++..++ -.+..||+.|+.++..+.-...+ +..++-+..++.++- +|.|.+||.
T Consensus 480 P~a~~P~~yvrhIyNR~i----LEN~ivRsaAv~aLskf~ln~~d----------~~~~~sv~~~lkRcl-nD~DdeVRd 544 (898)
T COG5240 480 PRAKTPGKYVRHIYNRLI----LENNIVRSAAVQALSKFALNISD----------VVSPQSVENALKRCL-NDQDDEVRD 544 (898)
T ss_pred CCCCCcchHHHHHHHHHH----HhhhHHHHHHHHHHHHhccCccc----------cccHHHHHHHHHHHh-hcccHHHHH
Confidence 433333 5555555443 23457899999999888654322 345555555666664 378899999
Q ss_pred HHHHHHHHH
Q 001062 580 CAISCMGLV 588 (1167)
Q Consensus 580 ~Ai~alg~l 588 (1167)
+|...+..+
T Consensus 545 rAsf~l~~~ 553 (898)
T COG5240 545 RASFLLRNM 553 (898)
T ss_pred HHHHHHHhh
Confidence 998877765
No 148
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.83 E-value=0.13 Score=56.26 Aligned_cols=222 Identities=13% Similarity=0.154 Sum_probs=145.7
Q ss_pred HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 001062 462 ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRV 541 (1167)
Q Consensus 462 ~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~ 541 (1167)
.|+=..+...+.+||+.. -.+.|+..|+.....+++..+++.+...+.-..|.+...+....-.|+-.-+..+....-.
T Consensus 49 IP~k~~v~krLaqCL~P~-LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lp 127 (307)
T PF04118_consen 49 IPHKLQVSKRLAQCLNPA-LPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLP 127 (307)
T ss_pred eCcHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 344456677788888754 3578999999999999999998888888888888888888766667888888888776654
Q ss_pred ccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHH
Q 001062 542 LRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAV 621 (1167)
Q Consensus 542 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~ 621 (1167)
+++ .+.|.++.++..++..+.+ ...|+.++....+..+....|..+ +++.+|-.+. ++...|..|+
T Consensus 128 L~~-------~L~p~l~~li~slLpGLed--e~sE~~~~~~~ll~~l~~~v~~~~--F~~~lwl~ii---~sp~~Rl~al 193 (307)
T PF04118_consen 128 LGP-------ALRPCLKGLILSLLPGLED--EGSEFFDRTLKLLDKLKEAVGDKY--FWQCLWLCII---TSPSRRLGAL 193 (307)
T ss_pred ccH-------HHHHHHHHHHHHhcccccc--CCchHHHHHHHHHHHHHHhcChhH--HHHHHHHHHh---cCcchhHHHH
Confidence 433 5778888888888888863 456889999999988887766541 3444444443 5667788887
Q ss_pred HHHHHHhcCCC-------CCc----hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCC----CChhhHHHHH
Q 001062 622 KAFAVIAASPL-------HID----LTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK----IGASAYEVII 686 (1167)
Q Consensus 622 ~al~~i~~~~~-------~~~----~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~----~~~~~~~~~l 686 (1167)
.-+..-..... ..+ +.+-..-++..+...+.+++--+++.++..|-.-..-.... ++.+....++
T Consensus 194 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL~s~~~~~~~~~~d~~~Lv 273 (307)
T PF04118_consen 194 NYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFPLDSPVLQSLLSPEDKELLV 273 (307)
T ss_pred HHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCCCCCcchhhhCCHHHHHHHH
Confidence 77764432211 000 01112236667777888888888887776655432211111 3344445555
Q ss_pred HHHhhhcCCCch
Q 001062 687 VELSTLISDSDL 698 (1167)
Q Consensus 687 ~~l~~~l~~~d~ 698 (1167)
...+.++-..|.
T Consensus 274 ~a~l~~~lrrDm 285 (307)
T PF04118_consen 274 MAALKVVLRRDM 285 (307)
T ss_pred HHHHHHHhHhhh
Confidence 555544433443
No 149
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.76 E-value=1.5 Score=50.41 Aligned_cols=316 Identities=17% Similarity=0.151 Sum_probs=164.6
Q ss_pred ChhHHHHHHHHHHHHHHHhccchhHHH------HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH----HHHHHHH
Q 001062 142 NTEIRCECLDILCDVLHKFGNLMSNDH------ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD----LLAKATI 211 (1167)
Q Consensus 142 ~~~v~~~~~~~L~~l~~~~g~~l~~~~------~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~----~~~~l~~ 211 (1167)
..++....+..+.+++...+....-++ +.....++..|..++.-+...|+..++.++.+.... ....+++
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~ 146 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFN 146 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHH
Confidence 466777777777777776543222111 334566667777788889999999999998764332 2333445
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccc
Q 001062 212 EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS 291 (1167)
Q Consensus 212 ~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~ 291 (1167)
.+...++.+.. ...+..++++++.+.+..+.|..=+-...++.+...+.... ..-.+--.++ +-.|...+.++..+
T Consensus 147 ~l~~~l~~~~~-~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~-~~~Ql~Y~~l--l~lWlLSF~~~~~~ 222 (429)
T cd00256 147 WLKEQLNNITN-NDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT-LGFQLQYQSI--FCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHhhccCC-cchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcc-ccHHHHHHHH--HHHHHHhccHHHHH
Confidence 55555554432 35677889999999887655421111224555555554410 1122222221 22233222212111
Q ss_pred cH--HHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCC------hh
Q 001062 292 YC--DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP------EM 363 (1167)
Q Consensus 292 ~l--~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~------~~ 363 (1167)
.+ ..+++.+...++-.+. =||=|-+..++..++.... ..
T Consensus 223 ~~~~~~~i~~l~~i~k~s~K---------------------------------EKvvRv~l~~l~Nll~~~~~~~~~~~~ 269 (429)
T cd00256 223 VLKRLSLIQDLSDILKESTK---------------------------------EKVIRIVLAIFRNLISKRVDREVKKTA 269 (429)
T ss_pred hhccccHHHHHHHHHHhhhh---------------------------------HHHHHHHHHHHHHHhhcccccchhhhH
Confidence 11 2455555555542111 1777788888888777431 11
Q ss_pred hHHHHHHHhhHHHhhhccC---ChhHHHHHHHHHHHHHHhh----C-----------CCCCCccCCCCC----chHHHHH
Q 001062 364 LSKLYEEACPKLIDRFKER---EENVKMDVFNTFIELVRQT----G-----------NVTKGQIDNNEL----NPRWLLK 421 (1167)
Q Consensus 364 l~~~~~~i~p~L~~~l~d~---~~~vr~~~~~~l~~l~~~~----~-----------~~~~~~~~~~~~----~p~~~l~ 421 (1167)
...++..=++.+++.+.+| ++.+. +-+..+.+.++.. . +...|-.-...+ .....|.
T Consensus 270 ~~~mv~~~l~~~l~~L~~rk~~DedL~-edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~ 348 (429)
T cd00256 270 ALQMVQCKVLKTLQSLEQRKYDDEDLT-DDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLN 348 (429)
T ss_pred HHHHHHcChHHHHHHHhcCCCCcHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHH
Confidence 1223332223344444433 23333 2233333333322 1 112231100000 0012333
Q ss_pred HHHHHHHHHHHHHhc-cCChhhHHHHHHHHHHHHHhcCchh--HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhc
Q 001062 422 QEVSKIVKSINRQLR-EKSIKTKVGAFSVLRELVVVLPDCL--ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1167)
Q Consensus 422 ~~~~~l~~~l~~~L~-~~~~~~r~~~~~~l~~l~~~~~~~l--~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1167)
+.==.+++.+.+.|. +.++.+-..|+.=++.++..+|.+- ...+. .=..+++.|+++ ++++|.+|+.++..++.
T Consensus 349 ~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~--d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 349 EKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHE--DPNVRYEALLAVQKLMV 425 (429)
T ss_pred hcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 333557777888884 3345555556666889998887542 11111 234577777766 57999999999988764
No 150
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.92 Score=55.41 Aligned_cols=114 Identities=17% Similarity=0.218 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHhhcCCCCh
Q 001062 149 CLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD----DLLAKATIEVVRNLRSKGAKP 224 (1167)
Q Consensus 149 ~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~ 224 (1167)
.++-++.++.-.|..+.+..-...=.++..+.++.+.++.-|..|+-.++..++. ..+.+=..+++..+...-...
T Consensus 568 ~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~ 647 (1014)
T KOG4524|consen 568 VLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTS 647 (1014)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccC
Confidence 4566777777777776554444444444556677788888899998888876543 234444444444432110000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhh
Q 001062 225 EMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTS 262 (1167)
Q Consensus 225 ~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~ 262 (1167)
..-...-..+..+++..+....||++.++..++..+.+
T Consensus 648 ~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~ 685 (1014)
T KOG4524|consen 648 GMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDY 685 (1014)
T ss_pred CCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Confidence 11223446677788888778889999999998887754
No 151
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.66 E-value=0.055 Score=61.52 Aligned_cols=184 Identities=22% Similarity=0.291 Sum_probs=126.6
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCCCccchHHHHHHhcCCChhhHHHHHHHHHHhhhhcCcccchHHH
Q 001062 812 TVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFI 891 (1167)
Q Consensus 812 ~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~~~lp~l 891 (1167)
..+.+...+.+ .+...+..+...+|+++. +..++.+.+.+.++++.+|..|+.+||.+. ....+|.+
T Consensus 44 ~~~~~~~~l~~---~~~~vr~~aa~~l~~~~~-------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---~~~a~~~l 110 (335)
T COG1413 44 AADELLKLLED---EDLLVRLSAAVALGELGS-------EEAVPLLRELLSDEDPRVRDAAADALGELG---DPEAVPPL 110 (335)
T ss_pred hHHHHHHHHcC---CCHHHHHHHHHHHhhhch-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---ChhHHHHH
Confidence 34455555544 245667777777777653 356788899999999999999999999753 35677888
Q ss_pred HHHhhc--ccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCc------------cchhhHHHHHhhhc
Q 001062 892 LDQIDN--QQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEE------------EGVRNVVAECLGKI 957 (1167)
Q Consensus 892 ~~~l~~--~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~------------e~vr~~aa~~Lg~l 957 (1167)
++.+.+ +...|.....+|+.+-... .+..++...+++. ..+|..+++.||.+
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~~~~~--------------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~ 176 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKLGDER--------------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL 176 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhcCchh--------------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc
Confidence 888874 3345777777777653211 1223333333221 24788888888876
Q ss_pred cccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHH
Q 001062 958 ALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFA 1033 (1167)
Q Consensus 958 ~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L~~~a 1033 (1167)
.. ....+.+.+.+.+....+|..+..++..+..+. ......|...++|++..||..++..|+..-
T Consensus 177 ~~---~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 177 GD---PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred CC---hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 43 345577888888878889999999888665543 234566778899999999999999887653
No 152
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.65 E-value=2.7 Score=51.34 Aligned_cols=172 Identities=17% Similarity=0.162 Sum_probs=105.4
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHH
Q 001062 106 IALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQAS 185 (1167)
Q Consensus 106 ~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~ 185 (1167)
-|+|.++..+... . -+..+.|.+++.+... +.++|.-...=|-...+..+ +..-..++.+++.++++++.
T Consensus 38 dAmK~iIa~M~~G---~-dmssLf~dViK~~~tr--d~ElKrL~ylYl~~yak~~P----~~~lLavNti~kDl~d~N~~ 107 (757)
T COG5096 38 DAMKKIIAQMSLG---E-DMSSLFPDVIKNVATR--DVELKRLLYLYLERYAKLKP----ELALLAVNTIQKDLQDPNEE 107 (757)
T ss_pred HHHHHHHHHHhcC---C-ChHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHhhccCCCHH
Confidence 4556655554332 1 1455666666655532 45655433332322222222 23334567888999999999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCC
Q 001062 186 VRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASE 265 (1167)
Q Consensus 186 vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e 265 (1167)
+|..|++.++.+-. +++++.+++.+.+.+.+++. .+|++|.-++..+-+..++.+..- .....+...+.+
T Consensus 108 iR~~AlR~ls~l~~---~el~~~~~~~ik~~l~d~~a--yVRk~Aalav~kly~ld~~l~~~~--g~~~~l~~l~~D--- 177 (757)
T COG5096 108 IRGFALRTLSLLRV---KELLGNIIDPIKKLLTDPHA--YVRKTAALAVAKLYRLDKDLYHEL--GLIDILKELVAD--- 177 (757)
T ss_pred HHHHHHHHHHhcCh---HHHHHHHHHHHHHHccCCcH--HHHHHHHHHHHHHHhcCHhhhhcc--cHHHHHHHHhhC---
Confidence 99999999887653 56788889999999988764 899999999999988665443211 023333333334
Q ss_pred CChhHHHHHHHHHHHHHHhCCccccccHHHHHHHH
Q 001062 266 NDEELREYSLQALESFLLRCPRDISSYCDEILHLT 300 (1167)
Q Consensus 266 ~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~ 300 (1167)
.|+.+...|+.++..+ +|+...+|...+...+
T Consensus 178 ~dP~Vi~nAl~sl~~i---~~e~a~~~~~~~~~~i 209 (757)
T COG5096 178 SDPIVIANALASLAEI---DPELAHGYSLEVILRI 209 (757)
T ss_pred CCchHHHHHHHHHHHh---chhhhhhHHHHHHHHh
Confidence 7888876666555444 4444556665555444
No 153
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=2.3 Score=50.37 Aligned_cols=232 Identities=19% Similarity=0.184 Sum_probs=133.9
Q ss_pred hHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCCCccchHHHHHHhcCCChhhHHHHHHHHHHhhhhcCccc-ch
Q 001062 810 SSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSK-FL 888 (1167)
Q Consensus 810 ~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~~-~l 888 (1167)
..+.+-+..++++. .++..++-+|+-||-.|.... -.++.+.+=..+..++.-.-.||..++|-+..|..+. .+
T Consensus 412 ~~~~~yL~~~Lk~~--~~e~v~hG~cLGlGLa~mGSa---~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eai 486 (929)
T KOG2062|consen 412 RGITDYLLQQLKTA--ENEVVRHGACLGLGLAGMGSA---NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAI 486 (929)
T ss_pred ccHHHHHHHHHHhc--cchhhhhhhhhhccchhcccc---cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHH
Confidence 45777778888774 467778888887776554321 1355666666677766666788899999888775432 22
Q ss_pred HHHHHHhhcccc----hhHHHH--------------HHHHHHHhhcccc--chhhh---hHHH----HHHHHHHHhh-cc
Q 001062 889 PFILDQIDNQQK----KQYLLL--------------HSLKEVIVRQSVD--KAEFQ---DSSV----EKILNLLFNH-CE 940 (1167)
Q Consensus 889 p~l~~~l~~~~~----~~~~~l--------------~aLkei~~~~~~~--~~~~l---~~~~----~~i~~~L~~~-~~ 940 (1167)
..+++--+ +++ .|-+.+ .-++|.+.....- ...-+ ..|. ..++..|+.. .+
T Consensus 487 edm~~Ya~-ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs 565 (929)
T KOG2062|consen 487 EDMLTYAQ-ETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS 565 (929)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccc
Confidence 22222211 111 121111 0111111111000 00000 0000 1122233332 44
Q ss_pred CCccchhhHHHHHhhhccccCcccchHHHHHhhc-CCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCCh
Q 001062 941 SEEEGVRNVVAECLGKIALIEPAKLVPALKVRTT-SSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDR 1019 (1167)
Q Consensus 941 ~~~e~vr~~aa~~Lg~l~~~~~~~~lp~l~~~~~-~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~ 1019 (1167)
+.+++||++|..+||=++..+|+.+ |...+.+. +-++.+|+-+.-++.-.+...+. ...+.-+=.+..|+..
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~~~-~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~ 638 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPEQL-PSTVSLLSESYNPHVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPVD 638 (929)
T ss_pred ccchHHHHHHHHHheeeEecChhhc-hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHH
Confidence 6678999999999999999999666 55666554 56899999999999988776652 1222222224458877
Q ss_pred HHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHh
Q 001062 1020 HVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQ 1054 (1167)
Q Consensus 1020 ~vr~~a~~~L~~~a~~~p~~~~~~l~~llp~L~~~ 1054 (1167)
-||+.|+.++..+.-...+...|.++.+-..+.+-
T Consensus 639 fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kv 673 (929)
T KOG2062|consen 639 FVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKV 673 (929)
T ss_pred HHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHH
Confidence 89999999888775555555556665554444433
No 154
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.62 E-value=0.031 Score=55.23 Aligned_cols=95 Identities=16% Similarity=0.274 Sum_probs=80.2
Q ss_pred HHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHH
Q 001062 368 YEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAF 447 (1167)
Q Consensus 368 ~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~ 447 (1167)
|...+|.+.+-+.|.++.-+.-+.+.+..+++..++ ..+-+.+|.++..+.+.|+.+++.+...++
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~--------------~kilPvlPqLI~plk~AL~tr~~~V~~~~L 101 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGG--------------EKILPVLPQLIIPLKRALNTRDPEVFCATL 101 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcch--------------hHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 667888888999999999998899999999987221 356788999999999999999999999999
Q ss_pred HHHHHHH---HhcCchhHhhhhhhHHHHHHhc
Q 001062 448 SVLRELV---VVLPDCLADHIGSLIPGIEKSL 476 (1167)
Q Consensus 448 ~~l~~l~---~~~~~~l~~~l~~l~~~l~~~l 476 (1167)
.+|..|+ ...++.+.+|+.+++|.+--..
T Consensus 102 ~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~ 133 (183)
T PF10274_consen 102 KALQQLVTSSDMVGEALVPYYRQLLPVLNLFK 133 (183)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999994 4457889999999999887433
No 155
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.60 E-value=0.82 Score=50.76 Aligned_cols=151 Identities=21% Similarity=0.338 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhccchhH--HHHHHHHH-HhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChH
Q 001062 149 CLDILCDVLHKFGNLMSN--DHERLLSA-LLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPE 225 (1167)
Q Consensus 149 ~~~~L~~l~~~~g~~l~~--~~~~l~~~-ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 225 (1167)
++.+...+++.....+.+ ....+++. +.+.++++++.+|+.|+.|+|..+-.-. +.-.+.++.+...++.. +.+
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~--~~~ 79 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKD--DEE 79 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhC--CHH
Confidence 455666677666644443 33355544 4589999999999999999998886554 44445556666666443 458
Q ss_pred HHHHHHHHHHHHHHHhhhh-hhcc--------hhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHH
Q 001062 226 MIRTNIQMVGALSRAVGYR-FGPH--------LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEI 296 (1167)
Q Consensus 226 ~r~~~~~~l~~l~~~~~~~-~~p~--------l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~i 296 (1167)
.+..+++++..+...-|.. |... -..+...+.+.+.+ ++++++..+.+.+..+..+-. +.+ .+++
T Consensus 80 v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~---~~~~~~~~a~EGl~KLlL~~~--i~~-~~~v 153 (298)
T PF12719_consen 80 VKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS---ENPELQAIAVEGLCKLLLSGR--ISD-PPKV 153 (298)
T ss_pred HHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhcCC--CCc-HHHH
Confidence 9999999999998876643 2222 24688888888888 788999999888877765421 111 3455
Q ss_pred HHHHHHhhccCCC
Q 001062 297 LHLTLEYLSYDPN 309 (1167)
Q Consensus 297 i~~~~~~l~~dp~ 309 (1167)
+..++-. -|||.
T Consensus 154 L~~Lll~-yF~p~ 165 (298)
T PF12719_consen 154 LSRLLLL-YFNPS 165 (298)
T ss_pred HHHHHHH-HcCcc
Confidence 5544322 25664
No 156
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=2.1 Score=49.46 Aligned_cols=352 Identities=16% Similarity=0.147 Sum_probs=168.9
Q ss_pred hHhHHHHHHHhcccccCCCh---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCc
Q 001062 22 YMATSDLLNELNKESFKADA---DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKD 98 (1167)
Q Consensus 22 ~mAl~dL~~~l~~~~~~~~~---~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~ 98 (1167)
+-|...+++.++..--.+.+ .+.+.-+-..++.+.|..+-++-+=.=+++.++-+++ .|..-+..+.....+..+
T Consensus 35 ~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~ 112 (559)
T KOG2081|consen 35 LFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRTQLAVAVAALALHMP--EWVNPIFELVRALSNKHP 112 (559)
T ss_pred HHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCc
Confidence 33447777777653323333 3444444455566666655666655556666665554 244333333333222211
Q ss_pred chhcHHHHHHHHHHhhcCCc--------------hh---HHHHHHHHHHHHHHhhhccCCC-hhHHHHHHHHHHHHHHHh
Q 001062 99 QHRDIASIALKTIIAEVTTS--------------SL---AQSIHTSLTPQLTKGITLKDMN-TEIRCECLDILCDVLHKF 160 (1167)
Q Consensus 99 ~~r~~a~~aL~~~~~~~~~~--------------~~---~~~~~~~i~p~Ll~~l~~~~~~-~~v~~~~~~~L~~l~~~~ 160 (1167)
+..++..++.-+|.+ ++ ..+...+++-.+...++..+.+ .++ ++.+++++
T Consensus 113 -----~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~~l~~lLe~~~l~~~~~-------l~~Vl~~l 180 (559)
T KOG2081|consen 113 -----AVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLVFLSDLLERSDLKSSDD-------LEQVLRCL 180 (559)
T ss_pred -----cHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHhhcCCChhhH-------HHHHHHHH
Confidence 134455555555543 00 1122334445555555554422 223 33444444
Q ss_pred ccchh------HHH---HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH----HHH-------HHHHHHHHhhcC
Q 001062 161 GNLMS------NDH---ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL----LAK-------ATIEVVRNLRSK 220 (1167)
Q Consensus 161 g~~l~------~~~---~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~----~~~-------l~~~l~~~l~~~ 220 (1167)
|.-+. .+. ..++..++..++++ ..-..|..|+..+.....+.. +.. +++....... .
T Consensus 181 ~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~-~ 257 (559)
T KOG2081|consen 181 GSWLRLHVFPPDQVLASFPLITLAFRSLSDD--ELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAM-A 257 (559)
T ss_pred hhhhhhccCCHHHHHhhhHHHHHHHHHcccc--hhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhh-c
Confidence 43221 111 13555666666532 455667777666654332210 111 1222222111 1
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhh--hc-chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC--C------ccc
Q 001062 221 GAKPEMIRTNIQMVGALSRAVGYRF--GP-HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC--P------RDI 289 (1167)
Q Consensus 221 ~~~~~~r~~~~~~l~~l~~~~~~~~--~p-~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~--~------~~~ 289 (1167)
..+.+.++.+...|..++..--..+ .| +.-.++..++-.... .+.|+-+..+..+-.+-+.. + .-|
T Consensus 258 ~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h---~~~evie~SF~fW~~lse~l~~~~~~~~~~~f 334 (559)
T KOG2081|consen 258 GEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGH---NDTEVIEASFNFWYSLSEELTLTDDDEALGIF 334 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccC---CchhhhhhhHHhhhhhHHHHhccccHHHHHHh
Confidence 2234566666666666555421111 11 112234344444444 56677777776665553321 1 137
Q ss_pred cccHHHHHHHHHHhhccCCCCCCCCCCCCcccc-----ccc---------ccchhhcCCCC--CCCCcchHHHHHHHHHH
Q 001062 290 SSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEA-----YEE---------EEEDESANEYT--DDEDASWKVRRAAAKCL 353 (1167)
Q Consensus 290 ~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~-----~~~---------~~d~~~~~~~~--dddd~sw~vR~aA~~~l 353 (1167)
+||..+++..+...++|.| |.++.-++.++.. ..| .+|...-.-|. ++...+|..=+||...+
T Consensus 335 rpy~~rLvs~l~~h~qlp~-~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l 413 (559)
T KOG2081|consen 335 RPYFLRLVSLLKRHVQLPP-DQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKENNASWEEVEAALFIL 413 (559)
T ss_pred HHHHHHHHHHHHHHccCCC-ccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 8999999999999999988 5443322211110 000 00000000000 23567899999999999
Q ss_pred HHHHhcCChhhHHHHHHHhhHHHhh---hccCChhHHHHHHHHHHHHHH
Q 001062 354 AALIVSRPEMLSKLYEEACPKLIDR---FKEREENVKMDVFNTFIELVR 399 (1167)
Q Consensus 354 ~~li~~~~~~l~~~~~~i~p~L~~~---l~d~~~~vr~~~~~~l~~l~~ 399 (1167)
..++.+.+..- ..++|.+++. +.+.. .+|...+..++++-+
T Consensus 414 ~~~~~~~~~~e----~~i~pevl~~i~nlp~Q~-~~~~ts~ll~g~~~e 457 (559)
T KOG2081|consen 414 RAVAKNVSPEE----NTIMPEVLKLICNLPEQA-PLRYTSILLLGEYSE 457 (559)
T ss_pred HHHhccCCccc----cchHHHHHHHHhCCccch-hHHHHHHHHHHHHHH
Confidence 99998875322 2334444333 23333 377666655555433
No 157
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.59 E-value=0.11 Score=55.32 Aligned_cols=190 Identities=13% Similarity=0.190 Sum_probs=118.2
Q ss_pred hHHHHHHHHHhc-CCChhHHhHhHHHHHHHhcccccCCChHHHHH--HHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh
Q 001062 3 NLQMAAILEKIT-GKDKDFRYMATSDLLNELNKESFKADADLEVK--LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE 79 (1167)
Q Consensus 3 ~~~i~~ll~~~~-~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~--i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~ 79 (1167)
+..+..++.-+. +.||-++.+|+..+.+.-. +....+..+. .++.+...|++|++.||..|..++..++.....
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa---f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA---FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 455666666666 4688999999999987433 2222333333 478899999999999999999999999865433
Q ss_pred -hhHHHHHHHHHHHhcCC--CcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHH
Q 001062 80 -PRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDV 156 (1167)
Q Consensus 80 -~~~~~l~~~L~~~~~~~--~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l 156 (1167)
..+...++.+++.+.+. +..++..+.-+|..+ .-..-....+...+|.++..|... +..+|..++.+|..+
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nL----tv~~~~~~~l~~~i~~ll~LL~~G--~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNL----TVTNDYHHMLANYIPDLLSLLSSG--SEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHcc----CCCcchhhhHHhhHHHHHHHHHcC--ChHHHHHHHHHHHHh
Confidence 23566788888866543 233443333333332 211112334445667777766654 578899999988877
Q ss_pred HHHh---ccchhHHHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHH
Q 001062 157 LHKF---GNLMSNDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDD 204 (1167)
Q Consensus 157 ~~~~---g~~l~~~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~ 204 (1167)
..+- +..+.. ..+..++..+..+. ..+-.+++..+..+...+.++
T Consensus 162 S~np~~~~~Ll~~---q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 162 SENPDMTRELLSA---QVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ccCHHHHHHHHhc---cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 6542 222221 23344455554443 367777777777776665443
No 158
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.56 E-value=0.02 Score=67.02 Aligned_cols=257 Identities=18% Similarity=0.233 Sum_probs=156.9
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcC----hhh
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS----EPR 81 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~----~~~ 81 (1167)
+..+|+.++-.+.+.|.-=..-|.+.+.. + ..+-...++++.|+..+.--+ +|...+.++....+ ++.
T Consensus 256 ~~~fLeel~lks~~eK~~Ff~~L~~~l~~--~-pe~i~~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~~ey 327 (690)
T KOG1243|consen 256 TLLFLEELRLKSVEEKQKFFSGLIDRLDN--F-PEEIIASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDEEEY 327 (690)
T ss_pred HHHHHHhcccCcHHHHHHHHHHHHHHHhh--h-hHHHHHHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhcccccc
Confidence 34555665555555552211222222211 0 112355677788887775332 34444555553221 234
Q ss_pred HHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc
Q 001062 82 VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 82 ~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
...+++.|++.+...+.++|-.=..-+...+..+++ +.+-+.|.|.+..|+.+. ++.+|+.++..+..++.+.+
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DT--n~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDT--NATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccC--CHHHHHHHHHHHHHHHhhhc
Confidence 456888888888777666665555555556666665 235678999999999886 58999999999999999988
Q ss_pred cchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHH-HHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 162 NLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIE-VVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~-l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
+. ....+++..+-..-.+++..+|-....|++.++.++....-+.++.. ....++++-. ..|..++..+.+....
T Consensus 402 ~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~--paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 402 KR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFV--PARKAGVLALAATQEY 477 (690)
T ss_pred hh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCC--CchhhhhHHHhhcccc
Confidence 85 23456666666555577789999999999999999866554443332 2334566543 4677777666655543
Q ss_pred hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC
Q 001062 241 VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1167)
Q Consensus 241 ~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~ 285 (1167)
.+.. .--..|+|.+.-...+ .+..+|+.+..++..+....
T Consensus 478 ~~~~--~va~kIlp~l~pl~vd---~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 478 FDQS--EVANKILPSLVPLTVD---PEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred cchh--hhhhhccccccccccC---cccchhhHHHHHHHHHHhhh
Confidence 2210 0112233333322233 66779999988888776554
No 159
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.53 E-value=0.021 Score=56.39 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=74.1
Q ss_pred hhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 001062 465 IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1167)
Q Consensus 465 l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1167)
+...+|.+++.|.+.. ...+.-|...+..+++..+++.+.|.++++++.+..+++.+++.|...++.++..++... +
T Consensus 36 y~~~Lpif~dGL~Et~--~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~-~ 112 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETE--HPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS-D 112 (183)
T ss_pred hhhHHHHHHhhhhccC--ccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh-h
Confidence 5566777777777653 356676777777887765667899999999999999999999999999999999995431 1
Q ss_pred CccccCCCCccchHHHHHHHH
Q 001062 545 SVEGLGFDFKPYVQPIYNAIM 565 (1167)
Q Consensus 545 ~~~~~~~~~~~~l~~l~~~ll 565 (1167)
.. ++.+.||.++++|.+-
T Consensus 113 ~v---G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 113 MV---GEALVPYYRQLLPVLN 130 (183)
T ss_pred hh---hHHHHHHHHHHHHHHH
Confidence 11 3468999999999764
No 160
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.51 E-value=0.16 Score=52.49 Aligned_cols=241 Identities=19% Similarity=0.221 Sum_probs=138.7
Q ss_pred HHHHHHHHhcCCC--hhHHhHhHHHHHHHhcccc--------------------cCCChHHHHHHHHHHHHhcCC--CCh
Q 001062 5 QMAAILEKITGKD--KDFRYMATSDLLNELNKES--------------------FKADADLEVKLSNIVVQQLDD--VAG 60 (1167)
Q Consensus 5 ~i~~ll~~~~~~d--~d~R~mAl~dL~~~l~~~~--------------------~~~~~~~~~~i~~~ll~~L~d--~~~ 60 (1167)
.+..+-+-+.+.. ---||-|+..|++...... +.+.+-....-++.+...|.| +.+
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~p 83 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEP 83 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccch
Confidence 5556666666622 3458999999987665311 111122223446777777765 566
Q ss_pred hHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHh--hcCCchhHHHHHHHHHHHHHHhhhc
Q 001062 61 DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIA--EVTTSSLAQSIHTSLTPQLTKGITL 138 (1167)
Q Consensus 61 ~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~--~~~~~~~~~~~~~~i~p~Ll~~l~~ 138 (1167)
.||..|.+|||.+. . +..++.|-++..++..++++-.-.|++.+=- .+....-..++.. .+
T Consensus 84 mvRhEAaealga~~----~---~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S----------vd 146 (289)
T KOG0567|consen 84 MVRHEAAEALGAIG----D---PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYIS----------VD 146 (289)
T ss_pred HHHHHHHHHHHhhc----c---hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCcccc----------CC
Confidence 89999999999875 1 2334444444456666778777777776421 1111000000000 01
Q ss_pred cCCC------hhHHHHHHHHHHHHHHHhccchh-HH--HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 001062 139 KDMN------TEIRCECLDILCDVLHKFGNLMS-ND--HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA 209 (1167)
Q Consensus 139 ~~~~------~~v~~~~~~~L~~l~~~~g~~l~-~~--~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l 209 (1167)
|.+. .+.|...+|.=-.+.++.-..|. .. .+.-+..+.+.+..++...|..+..++|++-.-. -
T Consensus 147 Pa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~-------a 219 (289)
T KOG0567|consen 147 PAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPA-------A 219 (289)
T ss_pred CCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchh-------h
Confidence 1100 11222222222223333322221 11 1445667778888887899999999998876422 2
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~ 282 (1167)
++.+.+.|.+..+..=+|..+..++|.|+. +..++.+-+++++ +++-+|++|.-+|...-
T Consensus 220 i~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D---~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 220 IPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGD---EERVVRESCEVALDMLE 279 (289)
T ss_pred hHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCC---cHHHHHHHHHHHHHHHH
Confidence 455566665554444678889999999987 4566777777777 77789999987776443
No 161
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=2.7 Score=49.55 Aligned_cols=456 Identities=12% Similarity=0.163 Sum_probs=220.0
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhc
Q 001062 168 HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGP 247 (1167)
Q Consensus 168 ~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p 247 (1167)
...+...+...|.+.++.--.-|..|++.++.----+.|..-++. .+.++...+-+|+.+..++-.+.|..|+-+.|
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~K---lLvS~~~~~~vkqkaALclL~L~r~spDl~~~ 185 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPK---LLVSGSSMDYVKQKAALCLLRLFRKSPDLVNP 185 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHH---HHhCCcchHHHHHHHHHHHHHHHhcCccccCh
Confidence 345566667777777777777888888887754333334333443 34444433467888888888999998887665
Q ss_pred chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhc---cC-CCCCCCCC---CC-Cc
Q 001062 248 HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS---YD-PNFTDNME---ED-SD 319 (1167)
Q Consensus 248 ~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~---~d-p~~~~~~~---~d-~~ 319 (1167)
+.-..-+.+.+.+ .+-.+.-++...++.++.+.|++...-++..+..+...+. +| .+|.+..- .- .-
T Consensus 186 --~~W~~riv~LL~D---~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 186 --GEWAQRIVHLLDD---QHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred --hhHHHHHHHHhCc---cccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 1223334444555 4555666777888888888887766555555544443332 11 11111000 00 00
Q ss_pred ccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCC----------------------------hhhHHHHHHH
Q 001062 320 DEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP----------------------------EMLSKLYEEA 371 (1167)
Q Consensus 320 ~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~----------------------------~~l~~~~~~i 371 (1167)
.+-. -..|.-.+|. .+|..-..++..++.... +.-.+.+...
T Consensus 261 l~rl--------Lq~~p~~~D~--~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~ 330 (938)
T KOG1077|consen 261 LLRL--------LQIYPTPEDP--STRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRA 330 (938)
T ss_pred HHHH--------HHhCCCCCCc--hHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 0000 0000000111 233333344444433211 0001222223
Q ss_pred hhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhc-cCChhhHHHHHHHH
Q 001062 372 CPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLR-EKSIKTKVGAFSVL 450 (1167)
Q Consensus 372 ~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~-~~~~~~r~~~~~~l 450 (1167)
+..|-+-+.+||.++|.=+++.+..++.+.. -.+.+..+. ..++..|+ +++..+|+.++.+|
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-------------s~davK~h~----d~Ii~sLkterDvSirrravDLL 393 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEF-------------SIDAVKKHQ----DTIINSLKTERDVSIRRRAVDLL 393 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccc-------------hHHHHHHHH----HHHHHHhccccchHHHHHHHHHH
Confidence 2223223356666666655555555543311 012333333 33445565 66778999999999
Q ss_pred HHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHH
Q 001062 451 RELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAE 530 (1167)
Q Consensus 451 ~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~ 530 (1167)
..++..- ....|+..+++.|... +..+|.+...-+.-+.+.+. .++.=|++-++..+-.+- |-..
T Consensus 394 Y~mcD~~------Nak~IV~elLqYL~tA--d~sireeivlKvAILaEKyA-tDy~WyVdviLqLiriag-d~vs----- 458 (938)
T KOG1077|consen 394 YAMCDVS------NAKQIVAELLQYLETA--DYSIREEIVLKVAILAEKYA-TDYSWYVDVILQLIRIAG-DYVS----- 458 (938)
T ss_pred HHHhchh------hHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhc-CCcchhHHHHHHHHHHhc-cccc-----
Confidence 9988642 2455566666666532 34566665544555555543 355556666666554332 1100
Q ss_pred HHHHHHHHHHhccCCccccCCCCccchH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCccccc----chhhhHH
Q 001062 531 ALRVCGELVRVLRPSVEGLGFDFKPYVQ-PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA----ELPACLP 605 (1167)
Q Consensus 531 al~~l~~l~~~~~~~~~~~~~~~~~~l~-~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~----~~~~~l~ 605 (1167)
=+++-.+++.+.. .+++++|.. .+++. +... ...++-+.+-|.++..+|..+.. .-...|.
T Consensus 459 -deVW~RvvQiVvN-----nedlq~yaak~~fe~----Lq~~----a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFs 524 (938)
T KOG1077|consen 459 -DEVWYRVVQIVVN-----NEDLQGYAAKRLFEY----LQKP----ACHENMVKVGGYILGEFGNLIADDPRSSPAVQFS 524 (938)
T ss_pred -HHHHHHhheeEec-----chhhhHHHHHHHHHH----Hhhh----HHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHH
Confidence 0122233333333 235666654 33333 3211 11222223333333333333322 2233455
Q ss_pred HHHHhhc--CchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHH
Q 001062 606 VLVDRMG--NEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYE 683 (1167)
Q Consensus 606 ~L~~~L~--~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~ 683 (1167)
++-+.+. ...+|.--+.+.-.+++-. .++.+ .+...+..+....|..+++-|.+-|...-... .+.++
T Consensus 525 llh~K~~~~s~~tr~lLLtTyiKl~nl~--PEi~~---~v~~vFq~~~n~~D~ElQqRa~EYLql~k~as-----~dvL~ 594 (938)
T KOG1077|consen 525 LLHEKLHLCSPVTRALLLTTYIKLINLF--PEIKS---NVQKVFQLYSNLIDVELQQRAVEYLQLSKLAS-----TDVLQ 594 (938)
T ss_pred HHHHHhccCChhHHHHHHHHHHHHHhhC--hhhhH---HHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc-----chHHH
Confidence 5655543 3345544444444444321 11111 11111222222346677777777766543221 24678
Q ss_pred HHHHHHhhhcCCCc
Q 001062 684 VIIVELSTLISDSD 697 (1167)
Q Consensus 684 ~~l~~l~~~l~~~d 697 (1167)
.++.++.++...++
T Consensus 595 ~vleeMPpF~er~s 608 (938)
T KOG1077|consen 595 TVLEEMPPFPERES 608 (938)
T ss_pred HHHhhCCCCccccc
Confidence 88888888775544
No 162
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.34 E-value=0.089 Score=52.36 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhc-CchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccC
Q 001062 422 QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL-PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1167)
Q Consensus 422 ~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~-~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1167)
..+..++..+...|+++++..|-.++.++..+++.. ++.|..+....+..+.+.|+... ...++..++..+..++...
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~-~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD-PPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHh
Confidence 456778888899999999999999999999999988 66677888888999999998753 3557777888888887532
Q ss_pred C--C----CchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHh
Q 001062 501 S--P----PVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRL 568 (1167)
Q Consensus 501 ~--~----~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 568 (1167)
. + +...|.++.+++.+++.+++ ......++.++..++... +..|.||..++-..+++.+
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~-------ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH-------PTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC-------CccccchHHHHHHHHHHHh
Confidence 2 1 23457788888888888875 356778899999988764 3368888888877766544
No 163
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.038 Score=58.24 Aligned_cols=149 Identities=18% Similarity=0.259 Sum_probs=110.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchh
Q 001062 427 IVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFH 506 (1167)
Q Consensus 427 l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~ 506 (1167)
.++..++.|.+++|..+..++..+..|...+++.+.+.+..++..+.+.+++. .+.+.-.|+.+++.++.+.. +.+.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl--RS~VsraA~~t~~difs~ln-~~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLN-NSID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 44556777888899999999999999999999999999999999999998865 45788888889999988764 3444
Q ss_pred hhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001062 507 PYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMG 586 (1167)
Q Consensus 507 ~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg 586 (1167)
..++.++-.++..-.+..-=|+..|-.++..++.+..| . .+++.++..+. ...+.+|..+..|..
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---------~----~~L~~L~~~~~--~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---------Q----KLLRKLIPILQ--HSNPRVRAKAALCFS 230 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---------H----HHHHHHHHHHh--hhchhhhhhhhcccc
Confidence 45566666666555555455888899999999887665 2 34444444443 345688888877777
Q ss_pred HHHHhcC
Q 001062 587 LVISTFG 593 (1167)
Q Consensus 587 ~l~~~~g 593 (1167)
.++..+|
T Consensus 231 ~~v~rl~ 237 (334)
T KOG2933|consen 231 RCVIRLG 237 (334)
T ss_pred ccceecc
Confidence 7766554
No 164
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=0.37 Score=56.45 Aligned_cols=105 Identities=21% Similarity=0.170 Sum_probs=82.0
Q ss_pred chHHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh
Q 001062 2 ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR 81 (1167)
Q Consensus 2 ~~~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~ 81 (1167)
.++.+..++....++|+.+||-.++=|...+. +...+|+...+.+...++.-+-|..+.||-+|+.||..+=..-.++.
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 46778899999999999999999887776665 56778999999999999999999999999999999998864333332
Q ss_pred HHHHHHHHHHHhc-CCCcchhcHHHHHH
Q 001062 82 VVEMTDKLCIKLL-NGKDQHRDIASIAL 108 (1167)
Q Consensus 82 ~~~l~~~L~~~~~-~~~~~~r~~a~~aL 108 (1167)
.++++.+...+. ++++++|..+...+
T Consensus 162 -~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 162 -CPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred -ccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 244555555554 57778888765543
No 165
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.17 E-value=0.28 Score=54.47 Aligned_cols=111 Identities=19% Similarity=0.305 Sum_probs=75.0
Q ss_pred chHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhc--CchhhHHHHHHHHHHhcCCC
Q 001062 556 YVQPIYNAIM-SRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG--NEITRLTAVKAFAVIAASPL 632 (1167)
Q Consensus 556 ~l~~l~~~ll-~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~--~e~~r~~a~~al~~i~~~~~ 632 (1167)
.+..+++.++ ..+. ..+..||+.|+.|+|-+.-.-+ . .-.+.++.+...++ ++..|..|++++.++...-.
T Consensus 23 ~l~~ll~~lI~P~v~--~~~~~vR~~al~cLGl~~Lld~-~---~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 23 SLESLLDSLILPAVQ--SSDPAVRELALKCLGLCCLLDK-E---LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred hHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhCh-H---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 4456666555 4554 4567999999999998864422 2 23444555555543 44578899999998873211
Q ss_pred CCchh--------hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001062 633 HIDLT--------CVLEHVIAELTAFLRKANRALRQATLGTMNSLVVA 672 (1167)
Q Consensus 633 ~~~~~--------~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~ 672 (1167)
...+. .....++..+..++.+.+..++..+.+.++.|..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 11111 22356778888899888989999999999999874
No 166
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.15 E-value=0.067 Score=48.68 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCc-cccccHHHHHHHHH
Q 001062 223 KPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-DISSYCDEILHLTL 301 (1167)
Q Consensus 223 ~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~-~~~~~l~~ii~~~~ 301 (1167)
+...++.++.+++.+.+.++..+.++.|+++-.+..++.. +++|+.|++++..|+.+.+. ++.|++++++..++
T Consensus 28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~-----~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI-----PELREEALSCWNCFIKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-----hhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 3577889999999999987777777778877777766644 58999999999999998864 58899999998888
Q ss_pred Hhh
Q 001062 302 EYL 304 (1167)
Q Consensus 302 ~~l 304 (1167)
+++
T Consensus 103 ~~~ 105 (107)
T PF08064_consen 103 PLW 105 (107)
T ss_pred Hhc
Confidence 765
No 167
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.10 E-value=0.062 Score=57.28 Aligned_cols=146 Identities=15% Similarity=0.143 Sum_probs=98.6
Q ss_pred HHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh-HHH--HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-H
Q 001062 130 PQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS-NDH--ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-L 205 (1167)
Q Consensus 130 p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~-~~~--~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~ 205 (1167)
..|+..|+..+ ++.+++.++-+++.... ..+. ... -..++.+...+.++++.+|.+|+.|+..++....+. .
T Consensus 15 ~~Ll~lL~~t~-dp~i~e~al~al~n~aa---f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 15 QKLLCLLESTE-DPFIQEKALIALGNSAA---FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHhcCC-ChHHHHHHHHHHHhhcc---ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 34555555433 68888888888876432 1111 111 124677778888999999999999999998776554 4
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 001062 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 206 ~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~ 284 (1167)
+...++.+...+.+..++.+.+..++.++..+.-.. .....+...+|.++..+.. .+..+|..+++++..+...
T Consensus 91 Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~--~~~~~l~~~i~~ll~LL~~---G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 91 IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN--DYHHMLANYIPDLLSLLSS---GSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--chhhhHHhhHHHHHHHHHc---CChHHHHHHHHHHHHhccC
Confidence 566777777766665556678888888888885432 2223344556666777776 6778888888888777643
No 168
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.01 E-value=5.7 Score=48.52 Aligned_cols=101 Identities=15% Similarity=0.226 Sum_probs=71.0
Q ss_pred cchhhHHHHHhhhccccC---cccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChH
Q 001062 944 EGVRNVVAECLGKIALIE---PAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRH 1020 (1167)
Q Consensus 944 e~vr~~aa~~Lg~l~~~~---~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~ 1020 (1167)
..+|+...-++|-+|... .+.|.|-+...++++++-+|.-.+.-+..++..+-. ..=..++-+|+..+-|.+.+
T Consensus 983 ~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~v---Kw~G~Lf~Rf~l~l~D~~ed 1059 (1529)
T KOG0413|consen 983 HAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIV---KWNGELFIRFMLALLDANED 1059 (1529)
T ss_pred HHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhh---hcchhhHHHHHHHHcccCHH
Confidence 356777777777777643 358999999999999999986666655555554321 11123566788888899999
Q ss_pred HHHHHHHHHHHHHhc-Cchhhhchhhhh
Q 001062 1021 VRRAAVLALSTFAHN-KPNLIKGLLPEL 1047 (1167)
Q Consensus 1021 vr~~a~~~L~~~a~~-~p~~~~~~l~~l 1047 (1167)
||+.|-.+++.+.+. .|..+..++-+.
T Consensus 1060 Ir~~a~f~~~~vL~~~~P~~f~~~FVe~ 1087 (1529)
T KOG0413|consen 1060 IRNDAKFYISEVLQSEEPNFFPLNFVEY 1087 (1529)
T ss_pred HHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 999999999998765 555555554443
No 169
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.95 E-value=4 Score=48.81 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCCh--HHHHHHHHHHHHHHH
Q 001062 121 AQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQ--ASVRKKSVSCIASLA 198 (1167)
Q Consensus 121 ~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~--~~vrk~a~~~l~~l~ 198 (1167)
.+++++..+|.++-.|.++ +..||...++++..+.++....- ...--+..|++..++++ +.||.-++.-+..-.
T Consensus 17 Le~~L~~~L~plLlkl~S~--~~~VR~kV~eil~hin~Rik~~~--~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~ 92 (501)
T PF13001_consen 17 LEQVLDKYLPPLLLKLASP--HASVRKKVIEILSHINKRIKSNP--SIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGF 92 (501)
T ss_pred HHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHhccCC--cCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhh
Confidence 4566777777777777765 58999999999999998876532 33334566777777766 588988888777777
Q ss_pred hhcCHHHHHHHHHHHHHHhhc
Q 001062 199 SSLSDDLLAKATIEVVRNLRS 219 (1167)
Q Consensus 199 ~~~~~~~~~~l~~~l~~~l~~ 219 (1167)
.-++.+.-..++|.+++++.+
T Consensus 93 ~Rl~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 93 DRLDDEERRELLPSLLKGISK 113 (501)
T ss_pred hcCCHHHHHHHHHHHHHhhcc
Confidence 777777777889999988864
No 170
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.94 E-value=0.1 Score=47.03 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCc-cccccHHHHHHHHHH
Q 001062 224 PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR-DISSYCDEILHLTLE 302 (1167)
Q Consensus 224 ~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~-~~~~~l~~ii~~~~~ 302 (1167)
...|+.++.+++.+.+.++..+..++|+++-.+..++. .+|+|+.|++++..|+.+.+. ++.|.+++++..+.+
T Consensus 29 ~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~-----~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~ 103 (107)
T smart00802 29 YNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE-----IPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILP 103 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 46688999999999998877777777777777776664 467999999999999998874 477888888888776
Q ss_pred hh
Q 001062 303 YL 304 (1167)
Q Consensus 303 ~l 304 (1167)
++
T Consensus 104 ~~ 105 (107)
T smart00802 104 LW 105 (107)
T ss_pred hc
Confidence 64
No 171
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.90 E-value=0.062 Score=53.03 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=55.7
Q ss_pred HHHHHHH-HHHHHHHhccCChhh-HHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhc
Q 001062 421 KQEVSKI-VKSINRQLREKSIKT-KVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1167)
Q Consensus 421 ~~~~~~l-~~~l~~~L~~~~~~~-r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1167)
.++.|.+ +..+.+.|++++-.. +..+++++..++...+..+.+|++.++|.+...+.... ...+...+.-++.++.
T Consensus 80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~--~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCP--DSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence 4566654 488888898886543 34567777777777777779999999999999998653 3667766666666653
No 172
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.91 Score=49.56 Aligned_cols=184 Identities=14% Similarity=0.135 Sum_probs=111.2
Q ss_pred cCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh---HH-HHHHHH
Q 001062 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR---VV-EMTDKL 89 (1167)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~---~~-~l~~~L 89 (1167)
.+.|.+-|.-|+..|...+..-..-.| =.--.-...++..+++++.++|..|...||..++-.+.-+ ++ ..+.+|
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAnd-l~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNAND-LISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHh-HhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 456778888999998877764110000 0011124556669999999999999999999986554322 11 236777
Q ss_pred HHHhcC-CCcchhcHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhH
Q 001062 90 CIKLLN-GKDQHRDIASIALKTIIAEVTTS--SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN 166 (1167)
Q Consensus 90 ~~~~~~-~~~~~r~~a~~aL~~~~~~~~~~--~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~ 166 (1167)
+..+.+ ++.++|.-+.+|+...+.+.++- .+. ++ +. +-.|...|++++.+...+..++.+++.++......-.-
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl-~~-~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL-KL-NG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH-hc-CC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 777764 44467789999999999887763 110 00 00 22344555555446777888999999888764332211
Q ss_pred HHHHHHHHHhhhhc-CChHHHHHHHHHHHHHHHhhc
Q 001062 167 DHERLLSALLPQLS-ANQASVRKKSVSCIASLASSL 201 (1167)
Q Consensus 167 ~~~~l~~~ll~~l~-~~~~~vrk~a~~~l~~l~~~~ 201 (1167)
.-....+..+..+. ..+..++..++.++-.+....
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 12222333333332 334467787777766665443
No 173
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=95.87 E-value=0.072 Score=48.47 Aligned_cols=94 Identities=16% Similarity=0.270 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhhhcC---Ch-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 001062 166 NDHERLLSALLPQLSA---NQ-ASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1167)
Q Consensus 166 ~~~~~l~~~ll~~l~~---~~-~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~ 241 (1167)
++.=.++..+-..+.+ .. ..-|++++.+++.+.. ...+.+....|.+...++..-...+.+..++.+|..+.+..
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 3333444444444444 33 3899999999999999 66666777777777777654333478999999999999986
Q ss_pred h-hhhhcchhhhHHHHHHHh
Q 001062 242 G-YRFGPHLGDTVPVLIDYC 260 (1167)
Q Consensus 242 ~-~~~~p~l~~lvp~l~~~l 260 (1167)
+ ..++|+++.++-.++...
T Consensus 86 ~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 86 DEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 5 578999988888877654
No 174
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.69 E-value=3.4 Score=48.30 Aligned_cols=295 Identities=17% Similarity=0.187 Sum_probs=140.8
Q ss_pred hhHHHHHHHHHHHhhhhcChhhHHHHHHH-HHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhc
Q 001062 60 GDVSGLAVKCLAPLVKKVSEPRVVEMTDK-LCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITL 138 (1167)
Q Consensus 60 ~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~-L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~ 138 (1167)
-..|-.|.++||.+..+++...+..+... |...+.+...-.|-.+++.+...+.......... ....+.+.|...|+.
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~-~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSP-PPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCc-cHHHHHHHHHHHHcC
Confidence 45688999999999999998888888875 7788888877778999999988877665421111 034555666666664
Q ss_pred cCCC---------hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcC--ChH----HHHHHHHHHHHHHHhhcCH
Q 001062 139 KDMN---------TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA--NQA----SVRKKSVSCIASLASSLSD 203 (1167)
Q Consensus 139 ~~~~---------~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~--~~~----~vrk~a~~~l~~l~~~~~~ 203 (1167)
+... ..+|.++-.++..+... |..-....+.+ +...+.-.. +.. ...+-+-..+..+...++.
T Consensus 180 ~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~-g~~~~~klp~l-~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~ 257 (441)
T PF12054_consen 180 PEPPYYDELVPSLKRLRTECQQLLATFRDV-GKVPPSKLPSL-PVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSP 257 (441)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhcccc-ccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3211 22455555555444433 32100111110 011111000 110 1111111122222222221
Q ss_pred H-------HHHHHHHHHH---HHhhcCCCChHHHHHHHHHHHHH-HHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHH
Q 001062 204 D-------LLAKATIEVV---RNLRSKGAKPEMIRTNIQMVGAL-SRAVGYRFGPHLGDTVPVLIDYCTSASENDEELRE 272 (1167)
Q Consensus 204 ~-------~~~~l~~~l~---~~l~~~~~~~~~r~~~~~~l~~l-~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re 272 (1167)
. .++.--..+. ...+........|-.+..+-..+ ....|+++.|.+..+ ++.+.. |++.++..
T Consensus 258 ~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpL----MdSIK~--Een~~LQ~ 331 (441)
T PF12054_consen 258 SQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPL----MDSIKR--EENELLQQ 331 (441)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHH----HHHhhc--cccHHHHH
Confidence 1 0111111111 11111000011121111111111 123567766654444 444544 26678888
Q ss_pred HHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCC----CCCCCCCCCcccc--ccccc-chhhcCCCCCCCCcchHH
Q 001062 273 YSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPN----FTDNMEEDSDDEA--YEEEE-EDESANEYTDDEDASWKV 345 (1167)
Q Consensus 273 ~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~----~~~~~~~d~~~~~--~~~~~-d~~~~~~~~dddd~sw~v 345 (1167)
-+..++..|+..|-..-..=-++|+.=+..+++-|+. +....+.++.... .+++. +..+...++++....---
T Consensus 332 rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~~~a~I~ 411 (441)
T PF12054_consen 332 RSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQKEARIQ 411 (441)
T ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhhhhhHHH
Confidence 8999999999887622222357888877788877754 2211111111000 00000 000001111111122345
Q ss_pred HHHHHHHHHHHHhcCChh
Q 001062 346 RRAAAKCLAALIVSRPEM 363 (1167)
Q Consensus 346 R~aA~~~l~~li~~~~~~ 363 (1167)
||.|..+|..+...+++.
T Consensus 412 RrGA~~aL~~l~~~FG~~ 429 (441)
T PF12054_consen 412 RRGAELALEQLAKRFGSS 429 (441)
T ss_pred hcCHHHHHHHHHHHHhHH
Confidence 788999999999888753
No 175
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=3.1 Score=44.34 Aligned_cols=273 Identities=16% Similarity=0.168 Sum_probs=138.1
Q ss_pred hHHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhc--Chh
Q 001062 3 NLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKV--SEP 80 (1167)
Q Consensus 3 ~~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~--~~~ 80 (1167)
..-+..+.+-+.++.|++|..|..-|...-.. .++.=.......++.+.+++.|+.+ -+.|++.+..++.+. ...
T Consensus 2 ~s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 2 TSELVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred chHHHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHH
Confidence 34567888999999999999998877765543 2221123456778888899988887 667778888887543 223
Q ss_pred hHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHH----HHHHHHHHHHhhhccCCChhHHHHHH-HHHHH
Q 001062 81 RVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI----HTSLTPQLTKGITLKDMNTEIRCECL-DILCD 155 (1167)
Q Consensus 81 ~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~----~~~i~p~Ll~~l~~~~~~~~v~~~~~-~~L~~ 155 (1167)
.+..++..++..+.++.+..-+..++.|.+....=..-...-.. .+.-++.+.....+++-+......-+ .++.+
T Consensus 79 ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 79 LLQDLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHHHHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 33334444555555665555566666655432211110000000 01223445444444432211221111 22222
Q ss_pred HHHH-hccchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH-----HHH---HHHHHHHHHHhhcCC----
Q 001062 156 VLHK-FGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD-----DLL---AKATIEVVRNLRSKG---- 221 (1167)
Q Consensus 156 l~~~-~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~-----~~~---~~l~~~l~~~l~~~~---- 221 (1167)
+-+. .|..+- ...--..+.+++.-+ +++.||+....+. +-..+-+ ..+ ..++++++.-+..++
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~Gvagt--lkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGT--LKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHH--HHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence 2221 233221 111233445555443 6678888754321 2111111 111 235555554432221
Q ss_pred --------------------CChHHHHHHHHHHHHHHHHh-hhh-hhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 001062 222 --------------------AKPEMIRTNIQMVGALSRAV-GYR-FGPHLGDTVPVLIDYCTSASENDEELREYSLQALE 279 (1167)
Q Consensus 222 --------------------~~~~~r~~~~~~l~~l~~~~-~~~-~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~ 279 (1167)
.+...|...+.++-.++.+. |.+ +. ..=++.++.-+.. .+++++.|++|.+...
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR---~kgvYpilRElhk-~e~ded~~~ace~vvq 311 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLR---SKGVYPILRELHK-WEEDEDIREACEQVVQ 311 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHH---hcCchHHHHHHhc-CCCcHHHHHHHHHHHH
Confidence 13567777777777776653 322 21 1222233333322 3378889999988877
Q ss_pred HHHHhC
Q 001062 280 SFLLRC 285 (1167)
Q Consensus 280 ~l~~~~ 285 (1167)
.++.--
T Consensus 312 ~Lv~~e 317 (353)
T KOG2973|consen 312 MLVRLE 317 (353)
T ss_pred HHHhcc
Confidence 776543
No 176
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.57 E-value=0.021 Score=38.61 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=24.8
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 001062 171 LLSALLPQLSANQASVRKKSVSCIASLASS 200 (1167)
Q Consensus 171 l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~ 200 (1167)
++|.+++.++|+++.||..|+.|++.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 567888888899999999999999988865
No 177
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.56 E-value=0.18 Score=55.61 Aligned_cols=126 Identities=25% Similarity=0.258 Sum_probs=98.4
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH-Hhhhhh
Q 001062 170 RLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSR-AVGYRF 245 (1167)
Q Consensus 170 ~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~-~~~~~~ 245 (1167)
.-+.-++..+++.+..+|+.|...+..+...-+... ...+++.+...+.+.+ ..+|...++++..+.. .++...
T Consensus 58 ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~--~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 58 LTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDD--SLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred ccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCcc--ccHHHHHHHHHHHHHhhcchhhh
Confidence 345556778888899999999999999888744432 3455666666665554 3689899999988655 466678
Q ss_pred hcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHH
Q 001062 246 GPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLT 300 (1167)
Q Consensus 246 ~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~ 300 (1167)
+|++.-++|++..++.+ --+++|+-++.++..++.+||..+..+...+++-.
T Consensus 136 sp~~~l~~~yi~~AMTh---it~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~ 187 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAMTH---ITPEIQEDSLKFLSLLLERYPDTFSRYASKILENF 187 (393)
T ss_pred cchHHHHHHHHHHHHhh---ccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 99999999999999999 78999999999999999999987766555544433
No 178
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.56 E-value=0.067 Score=48.25 Aligned_cols=96 Identities=17% Similarity=0.287 Sum_probs=69.6
Q ss_pred cchHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhcCCC
Q 001062 555 PYVQPIYNAIMSRLTNQD--QDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPL 632 (1167)
Q Consensus 555 ~~l~~l~~~ll~~l~~~d--~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~~~ 632 (1167)
+++=.++..+-+.+.+.+ .+..-|.+++.+++.+++..|..+...+++++-.|...|..++.|..|++++..+...-.
T Consensus 7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCC
Confidence 344445555555554433 234568899999999999888888888889888888889988899999999999886543
Q ss_pred CCchhhHHHHHHHHHHHH
Q 001062 633 HIDLTCVLEHVIAELTAF 650 (1167)
Q Consensus 633 ~~~~~~~~~~~l~~L~~~ 650 (1167)
..++.+.+.+++..+.++
T Consensus 87 ~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 87 EEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445566666655554443
No 179
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.55 E-value=2.7 Score=50.14 Aligned_cols=255 Identities=14% Similarity=0.110 Sum_probs=158.4
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHhhhhcChhhH
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD---VAGDVSGLAVKCLAPLVKKVSEPRV 82 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d---~~~~Vr~~A~~~l~~l~~~~~~~~~ 82 (1167)
+..=+.|+.+.|..+|. ++..+... +.+++...+ -|+.|+| .++.-+..=.+.|..+++.++...|
T Consensus 241 l~~~l~k~l~~~~~~rp-~~~~l~~~-----~ff~D~~~~-----aLrfLD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv~ 309 (700)
T KOG2137|consen 241 LRESLKKLLNGDSAVRP-TLDLLLSI-----PFFSDPGLK-----ALRFLDDLPQKDNSQKSSFLKGLSKLIPTFPARVL 309 (700)
T ss_pred HHHHHHHHhcCCcccCc-chhhhhcc-----cccCCchhh-----hhhhcccccccCcHHHHHHHHHHHHhhccCCHHHH
Confidence 44556788889999998 54444321 112222221 1233332 3666677778889999988887754
Q ss_pred -HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc
Q 001062 83 -VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 83 -~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
..+++.|+..+.+..-. .+..-..-.+.+..+. ..+...++|.|...++.++ ...+..-.++=+..|.++..
T Consensus 310 ~~kiLP~L~~el~n~~~v--p~~LP~v~~i~~~~s~----~~~~~~~~p~l~pi~~~~~-~~~~~l~i~e~mdlL~~Kt~ 382 (700)
T KOG2137|consen 310 FQKILPTLVAELVNTKMV--PIVLPLVLLIAEGLSQ----NEFGPKMLPALKPIYSASD-PKQALLFILENMDLLKEKTP 382 (700)
T ss_pred HHhhhhHHHHHhcccccc--ccccchhhhhhhccch----hhhhhhhhHHHHHHhccCC-cccchhhHHhhHHHHHhhCC
Confidence 57888888877543211 0000001111122222 2356677888877766432 34455555555555555555
Q ss_pred cchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 162 NLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
.. ...+.+++.+...+++.+..++.++++.+..++..++-... +.++|.+.+...+.. +..++..++.+++.++..
T Consensus 383 ~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt-~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 383 PE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTT-NLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred hH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhccc-chHHHHHHHHHHHHHHHH
Confidence 43 46788999999999999999999999999999999986643 557777766643332 346777888999998865
Q ss_pred hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCc
Q 001062 241 VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1167)
Q Consensus 241 ~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~ 287 (1167)
+-.. .-++.+.| ++.+.+. .|+++.-.+++..+.++...+.
T Consensus 460 lD~~--~v~d~~lp-i~~~~~~---~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 460 LDKA--AVLDELLP-ILKCIKT---RDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHH--HhHHHHHH-HHHHhcC---CCcHHHHHHHHHHHHHHhhccc
Confidence 4221 11344444 4455555 6788888888888888766554
No 180
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.51 E-value=6.3 Score=45.35 Aligned_cols=295 Identities=16% Similarity=0.149 Sum_probs=157.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccc-ccchhhhHHHHHHhhcC---chhhHHHHHHHHHHhcCC-CCCchhhHHHHHHHHH
Q 001062 573 QDQEVKECAISCMGLVISTFGDNL-GAELPACLPVLVDRMGN---EITRLTAVKAFAVIAASP-LHIDLTCVLEHVIAEL 647 (1167)
Q Consensus 573 ~~~~vr~~Ai~alg~l~~~~g~~l-~~~~~~~l~~L~~~L~~---e~~r~~a~~al~~i~~~~-~~~~~~~~~~~~l~~L 647 (1167)
.|.-+...|...++.++....... ....+.++..+...+++ ......+++++..+.... .+.-| |-...++.|
T Consensus 113 ~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f--~~~~~v~~L 190 (429)
T cd00256 113 QDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF--VLADGVPTL 190 (429)
T ss_pred CchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH--HHccCHHHH
Confidence 366788999999999876533222 12344455566666653 234677889998887432 11111 112245556
Q ss_pred HHHHHH--hhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCch-hhHHHHHHHHHHHhhccc-CCCc--h
Q 001062 648 TAFLRK--ANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDL-HMTALALELCCTLMADKR-SSPN--V 721 (1167)
Q Consensus 648 ~~~L~~--~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~-~~~~~al~~l~~l~~~~~-~~p~--~ 721 (1167)
.+.|+. .+..+.+.++-|+..+.-.... .....-..+++.+...++.+-. -+...++.++..++.... ..+. .
T Consensus 191 ~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~-~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~ 269 (429)
T cd00256 191 VKLLSNATLGFQLQYQSIFCIWLLTFNPHA-AEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTA 269 (429)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHhccHHH-HHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhH
Confidence 666654 2557888888898877432211 0000012345555555543322 367778888888876410 0001 1
Q ss_pred hhhhhhchHHHHHHHhhhccchhhhHHHHHHHH-HHHHhc--cCCChHHHHHHHhhcCCCCCCCcchhhhhh--HHHHHH
Q 001062 722 GLAVRNKVLPQALALIKSSLLQGQALVALQSFF-AALVYS--ANTSFDTLLDSLLSSAKPSPQSGGVAKQAM--YSIAQC 796 (1167)
Q Consensus 722 ~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~-~~l~~~--~~~~~~~ll~~L~~~~~~~~~~~~~~~~a~--~~~a~~ 796 (1167)
.......=++.+++.+...-....++..-+..+ ..+.+. .-..|+++..++....-. -+|.+. .+.+ .++.
T Consensus 270 ~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~-WSp~H~-se~FW~EN~~-- 345 (429)
T cd00256 270 ALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLH-WSPVHK-SEKFWRENAD-- 345 (429)
T ss_pred HHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCcc-CCCCCC-CchHHHHHHH--
Confidence 112223233444444443333444443222222 222221 124677777776653311 112210 0111 1111
Q ss_pred HHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCC--Ccc--chHHHHHHhcCCChhhHHHHH
Q 001062 797 VAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLS--SHE--HIENVIIESFQSPFEEIKSAA 872 (1167)
Q Consensus 797 i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~--~~~--~~~~~l~~~l~~~~e~vr~aa 872 (1167)
.. .. .--.++..+.+.+.. +.++...+.||+=+||+.++.+.. ... ...+.+++++++++++||.-|
T Consensus 346 --kf---~~--~~~~llk~L~~iL~~--s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eA 416 (429)
T cd00256 346 --RL---NE--KNYELLKILIHLLET--SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEA 416 (429)
T ss_pred --HH---Hh--cchHHHHHHHHHHhc--CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence 11 00 113566677777744 245555678888899999986432 112 257889999999999999999
Q ss_pred HHHHHhhhhcC
Q 001062 873 SYALGNIAVGN 883 (1167)
Q Consensus 873 a~aLG~l~~~~ 883 (1167)
-.|++++...|
T Consensus 417 L~avQklm~~~ 427 (429)
T cd00256 417 LLAVQKLMVHN 427 (429)
T ss_pred HHHHHHHHHhc
Confidence 99999887654
No 181
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.45 E-value=0.12 Score=45.33 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
.+...++-+.||.+=+|--|+..|.+.+.+.+ ......++++..++..|.|+++-|==+|+++++.|+...+.+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~---- 77 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE---- 77 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH----
Confidence 45667788899999999999999999998765 345678999999999999999999999999999999877654
Q ss_pred HHHHHHHHhcC
Q 001062 85 MTDKLCIKLLN 95 (1167)
Q Consensus 85 l~~~L~~~~~~ 95 (1167)
+++.|+....+
T Consensus 78 vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 VLPILLDEYAD 88 (92)
T ss_pred HHHHHHHHHhC
Confidence 45555554433
No 182
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=21 Score=50.73 Aligned_cols=236 Identities=16% Similarity=0.151 Sum_probs=120.7
Q ss_pred CCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChh---hHHHHHHHHHH
Q 001062 15 GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP---RVVEMTDKLCI 91 (1167)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~---~~~~l~~~L~~ 91 (1167)
++-..+|..++.=|++...++.++ +....++..+++.|...|.|.-..+.|.++.+.+..++. .+..+++..++
T Consensus 69 ~~~~~lR~~~Leil~r~~~~e~~~---~~~~~~~~~~~~vl~~dNeen~~l~lkii~~l~r~f~~~~~~~v~~fl~~V~~ 145 (3550)
T KOG0889|consen 69 SPEQELRNLVLEILNRLPHNEVFK---PFSQELLKVLMRVLTNDNEENAILCLKIITDLFRQFKSLVEQHVQPFLDIVID 145 (3550)
T ss_pred CcHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 344567887777777666555443 456788899999999999999999999999988765542 23333333333
Q ss_pred HhcCC-----------C---cchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHH----
Q 001062 92 KLLNG-----------K---DQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDIL---- 153 (1167)
Q Consensus 92 ~~~~~-----------~---~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L---- 153 (1167)
.-.+. . .+....+- +......|....+.+.. .+.++-.++.++
T Consensus 146 ly~~~~~~v~~~f~~p~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~e~~--~p~~~~~s~kvl~e~p 206 (3550)
T KOG0889|consen 146 LYKNMPNLVNEGFIEPKSTEEEPLNHPE-----------------SADSSLTEYHKIGVEQL--LPSTYPQSFKVLAECP 206 (3550)
T ss_pred HHHhhhhhcccccCCCCcCcCCCCCchh-----------------hhhhhcCcccccCcccc--Ccccccceeeeheecc
Confidence 22110 0 00001111 11111111111111111 011111111111
Q ss_pred --H-HHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCC-CChHHHHH
Q 001062 154 --C-DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG-AKPEMIRT 229 (1167)
Q Consensus 154 --~-~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~r~~ 229 (1167)
- -+...+........+.++|..++.+.=..+. + .++..+...+++.+.+-. +-...|+.
T Consensus 207 ~iv~~~~q~yk~~i~~~i~~~~pL~~~~l~v~~~d----~-------------~~~~~~~~~~~~ll~~CP~el~~~RkE 269 (3550)
T KOG0889|consen 207 IIVVLLYQLYKQLIQTGIPELLPLILNFLSVRVPD----S-------------PYWMFLSDGTLQLLYDCPSELLSLRKE 269 (3550)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhCCCCCC----C-------------ccchhHHHHHHHHHHhChHHHHHHHHH
Confidence 0 1223334444466777888888776432220 0 122222233444443322 11346777
Q ss_pred HHHHHHHHHHHh-hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccc
Q 001062 230 NIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS 290 (1167)
Q Consensus 230 ~~~~l~~l~~~~-~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~ 290 (1167)
.+.++--++.+. -..|-|+++.++.-=+ .++..--..+-+|--|+.++..++.+...++.
T Consensus 270 lL~a~rhilst~~k~~f~P~id~L~de~i-LiG~G~t~~e~lRplays~LAdllHhvR~~L~ 330 (3550)
T KOG0889|consen 270 LLVATRHILSTDLKRGFLPMIDKLLDERI-LIGTGFTAQESLRPLAYSMLADLLHHVRESLS 330 (3550)
T ss_pred HHHHHHHHHhHhHHhhhhhhhHHHhccce-eecCCcchhhhccHHHHHHHHHHHHHHHhcCC
Confidence 777777776654 4457777666543211 01110002345888999999999998876665
No 183
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.33 E-value=1.2 Score=49.76 Aligned_cols=191 Identities=10% Similarity=0.207 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHH-HHHHHHHHHHHhcCchhHh
Q 001062 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKV-GAFSVLRELVVVLPDCLAD 463 (1167)
Q Consensus 385 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~-~~~~~l~~l~~~~~~~l~~ 463 (1167)
.+|.++++.+.+.+..... +.......+|+++..+..--+...+..|. ..+.++.+++...++.+.+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~------------~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~ 109 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAED------------PEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQP 109 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-------------HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHhccCC------------HHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhh
Confidence 4667777777777765431 21234567788888777666666666665 5678888888887776666
Q ss_pred hhhhhHHHHH----HhcccC-CCCchHHHHHHHHHHHHhccCCCCchh----hhhHhhHHHHHHHhcCCchHHHHHHHHH
Q 001062 464 HIGSLIPGIE----KSLNDK-SSTSNLKIEALTFTRLVLSSHSPPVFH----PYIKALSSPVLAAVGERYYKVTAEALRV 534 (1167)
Q Consensus 464 ~l~~l~~~l~----~~l~d~-~~~~~~~~~al~~l~~l~~~~~~~~~~----~~l~~ll~~l~~~l~d~~~~v~~~al~~ 534 (1167)
+++.++..+. ..+++. ...++.|..-..+++.+...+- +.+. ..+..++..+.-++++....|...++.+
T Consensus 110 ~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f-~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~ 188 (319)
T PF08767_consen 110 QVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCF-PALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNI 188 (319)
T ss_dssp CHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHT-HHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhH-HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 6666555544 444432 2346789999999999988653 2332 2567788888889999999999999999
Q ss_pred HHHHHHhccCCcccc-CCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 001062 535 CGELVRVLRPSVEGL-GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVI 589 (1167)
Q Consensus 535 l~~l~~~~~~~~~~~-~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~ 589 (1167)
+.+++..+....... ..=+..|.-.++..++..+.+++-....+..+ ..+..+.
T Consensus 189 l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~-~iL~~Lf 243 (319)
T PF08767_consen 189 LLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQS-QILSNLF 243 (319)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHH-HHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHH-HHHHHHH
Confidence 999998765411000 01134566677778888886554333344433 3344443
No 184
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.28 E-value=0.83 Score=52.35 Aligned_cols=158 Identities=16% Similarity=0.219 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHHHHH
Q 001062 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGA------KPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 167 ~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~------~~~~r~~~~~~l~~l~~~ 240 (1167)
.++-....+.+.+..+++..|+.|+++|. .+.-+++++|+++..+.+.-. +-+.-...+...-++.++
T Consensus 204 ElQlYy~~It~a~~g~~~~~r~eAL~sL~------TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 204 ELQLYYKEITEACTGSDEPLRQEALQSLE------TDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhc------cCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 33333444444444566788888888775 233466777777766654311 111111222233333332
Q ss_pred hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcc
Q 001062 241 VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDD 320 (1167)
Q Consensus 241 ~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~ 320 (1167)
---.+.||+..+||.++.|+-.. .+..+|+
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk---------------------------------------~l~~~p~----------- 307 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSK---------------------------------------NLCLRPE----------- 307 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhh---------------------------------------hccCCcc-----------
Confidence 22256778888888877766441 0111221
Q ss_pred cccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccC--ChhHHHHHHHHHHHHH
Q 001062 321 EAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKER--EENVKMDVFNTFIELV 398 (1167)
Q Consensus 321 ~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~--~~~vr~~~~~~l~~l~ 398 (1167)
.|..|.+|.-|++.+..+...+++....+...+.-.+.+.|.|. .......++.++.++-
T Consensus 308 ------------------~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 308 ------------------LDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred ------------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 23579999999999999999888665556666666677777544 4555666666665553
No 185
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.27 E-value=0.4 Score=52.58 Aligned_cols=152 Identities=14% Similarity=0.226 Sum_probs=108.6
Q ss_pred CchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCc---hhh--hhHhhHHHHHHHhc--------CCc
Q 001062 458 PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPV---FHP--YIKALSSPVLAAVG--------ERY 524 (1167)
Q Consensus 458 ~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~---~~~--~l~~ll~~l~~~l~--------d~~ 524 (1167)
...++.+++-++|.++..+.|. ...+|..++.++..+++...+.. +.. ..+.+.+.+..++. +..
T Consensus 110 ~~~i~~~~~liiP~iL~llDD~--~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 110 RPWISQHWPLIIPPILNLLDDY--SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred cchHHHhhhHHHhhHHHHhcCC--CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 4567899999999999999876 56899999999999998766555 443 35566667777765 566
Q ss_pred hHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHH-HHHHHHhhcCCC--CHHHHHHHHHHHHHHHHhcCcccccchh
Q 001062 525 YKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY-NAIMSRLTNQDQ--DQEVKECAISCMGLVISTFGDNLGAELP 601 (1167)
Q Consensus 525 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~-~~ll~~l~~~d~--~~~vr~~Ai~alg~l~~~~g~~l~~~~~ 601 (1167)
..+...++.++-.++....... .......+.+++ ..++..+.-... ..+++...+..+..++..+|.....+++
T Consensus 188 ~~Ll~~ay~~L~~L~~~~~~~~---~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~ 264 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQENDD---SNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQ 264 (282)
T ss_pred HHHHHHHHHHHHHHHHhhccCC---cccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7888888899888877542211 112223333333 335555543222 4688888899999999998887778899
Q ss_pred hhHHHHHHhhcCc
Q 001062 602 ACLPVLVDRMGNE 614 (1167)
Q Consensus 602 ~~l~~L~~~L~~e 614 (1167)
++++++.+-+.|.
T Consensus 265 rii~~l~~~l~np 277 (282)
T PF10521_consen 265 RIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHHhcCC
Confidence 9999988766654
No 186
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.15 E-value=1.3 Score=46.03 Aligned_cols=195 Identities=14% Similarity=0.211 Sum_probs=109.2
Q ss_pred HHhhHHHhhh--ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHH
Q 001062 370 EACPKLIDRF--KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAF 447 (1167)
Q Consensus 370 ~i~p~L~~~l--~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~ 447 (1167)
..+|.|+..+ .++++-||.++-.+++++.. |.+.+.+.+..+++...+++.|.
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~~-------------------------~~~~~~l~k~~~dp~~~v~ETc~ 121 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-------------------------PESLEILTKYIKDPCKEVRETCE 121 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhcc-------------------------hhhHHHHHHHhcCCccccchHHH
Confidence 3456666665 35578899999999987651 34455566666666667777665
Q ss_pred HHHHHHHHhcC-ch---hHhh------hh---hhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHH
Q 001062 448 SVLRELVVVLP-DC---LADH------IG---SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSS 514 (1167)
Q Consensus 448 ~~l~~l~~~~~-~~---l~~~------l~---~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~ 514 (1167)
-++..+--... +. -.+| -+ .-+..+...|.|.+..-..|..++-.++. ++. +.-+.
T Consensus 122 lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn----~g~-------EeaI~ 190 (289)
T KOG0567|consen 122 LAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRN----IGT-------EEAIN 190 (289)
T ss_pred HHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhc----cCc-------HHHHH
Confidence 55544421110 00 0011 01 11223333333332211222222222222 111 22355
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 001062 515 PVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD 594 (1167)
Q Consensus 515 ~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~ 594 (1167)
.+...+.+.+.-.+.++..++|++-. + .-+|.+.+.|.+....+-||..|..+||.+.
T Consensus 191 al~~~l~~~SalfrhEvAfVfGQl~s---~--------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----- 248 (289)
T KOG0567|consen 191 ALIDGLADDSALFRHEVAFVFGQLQS---P--------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA----- 248 (289)
T ss_pred HHHHhcccchHHHHHHHHHHHhhccc---h--------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc-----
Confidence 66777777777888899999998731 1 1233333444444556789999999999875
Q ss_pred ccccchhhhHHHHHHhhcCch--hhHHHHHHHHHH
Q 001062 595 NLGAELPACLPVLVDRMGNEI--TRLTAVKAFAVI 627 (1167)
Q Consensus 595 ~l~~~~~~~l~~L~~~L~~e~--~r~~a~~al~~i 627 (1167)
-+.++++|.+.++++. +|+.+.-+++..
T Consensus 249 -----~e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 249 -----DEDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred -----CHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 2567888888777654 566666666543
No 187
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=11 Score=45.97 Aligned_cols=176 Identities=9% Similarity=0.142 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHhccCC-----hhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhc
Q 001062 424 VSKIVKSINRQLREKS-----IKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1167)
Q Consensus 424 ~~~l~~~l~~~L~~~~-----~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1167)
+.-++..+.+.+.+.. +..-++|+..+.++++..++...+.++.++......=-... +......+...++.+..
T Consensus 460 l~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~-n~ql~~Tss~~igs~s~ 538 (982)
T KOG2022|consen 460 LDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAP-NPQLLSTSSDLIGSLSN 538 (982)
T ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccC-ChhHHHHHHHHHHHHHH
Confidence 3445566666666544 44566888889999999988887777777665543211111 33444555566666554
Q ss_pred cCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHH
Q 001062 499 SHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVK 578 (1167)
Q Consensus 499 ~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr 578 (1167)
-.+.+ ..|++.-+|.++.++..+ +...++...+..+|+.... .+.||.+.++..+-+.+.........|
T Consensus 539 ~l~e~--P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~-------~L~py~d~~~a~~~e~l~~~~~~~S~~ 607 (982)
T KOG2022|consen 539 WLGEH--PMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPE-------SLDPYADQFSAVCYEVLNKSNAKDSDR 607 (982)
T ss_pred HHhcC--CcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhh-------hCchHHHHHHHHHHHHhcccccCchHH
Confidence 32211 126677778888888543 6666777778888887643 689999999999888886656667889
Q ss_pred HHHHHHHHHHHHhcC-cccccchhhhHHHHHHhh
Q 001062 579 ECAISCMGLVISTFG-DNLGAELPACLPVLVDRM 611 (1167)
Q Consensus 579 ~~Ai~alg~l~~~~g-~~l~~~~~~~l~~L~~~L 611 (1167)
.+...++|.++.... +....|+..++..+...+
T Consensus 608 ~klm~sIGyvls~~~pEe~~kyl~~lin~il~ql 641 (982)
T KOG2022|consen 608 LKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQL 641 (982)
T ss_pred HHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHH
Confidence 999999999988765 333346666666666544
No 188
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.06 E-value=0.21 Score=58.85 Aligned_cols=245 Identities=16% Similarity=0.194 Sum_probs=144.1
Q ss_pred hccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhc---cCCCCchhhhhHh
Q 001062 435 LREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS---SHSPPVFHPYIKA 511 (1167)
Q Consensus 435 L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~---~~~~~~~~~~l~~ 511 (1167)
+.-++..-|+..++.|..-...+|+.+. ...++|.+...+.=.. ++-.++..+++ .+..+ +|-..
T Consensus 263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~-------a~~~~ltpl~k~~k~ld~~---eyq~~ 330 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD-------AASDFLTPLFKLGKDLDEE---EYQVR 330 (690)
T ss_pred cccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc-------cchhhhhHHHHhhhhcccc---ccccc
Confidence 3344455566666666666666666552 4455666665554221 11122333322 12222 26677
Q ss_pred hHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 001062 512 LSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIST 591 (1167)
Q Consensus 512 ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~ 591 (1167)
++|.+.+.+...+-.+|..-|.-+.+++.++.+. .+-++++|.+...+. |+++-+|+..+.++..++..
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~---------~~~d~I~phv~~G~~--DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ---------ILNDQIFPHVALGFL--DTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH---------hhcchhHHHHHhhcc--cCCHHHHHHHHHHHHHHHhh
Confidence 8999999988777778876666666776666542 256789999888885 67889999999999999988
Q ss_pred cCcc-cccchhhhHHHHHHhhcC-c--hhhHHHHHHHHHHhcCCCCCchhhHHHH--HHHHHHHHHHHhhHHHHHHHHHH
Q 001062 592 FGDN-LGAELPACLPVLVDRMGN-E--ITRLTAVKAFAVIAASPLHIDLTCVLEH--VIAELTAFLRKANRALRQATLGT 665 (1167)
Q Consensus 592 ~g~~-l~~~~~~~l~~L~~~L~~-e--~~r~~a~~al~~i~~~~~~~~~~~~~~~--~l~~L~~~L~~~~~~lr~~al~~ 665 (1167)
++.. +.. +++..+. +++. + ..|..+.-++|.|+.- +.+.... +...+...++++-..-|.+++..
T Consensus 400 L~~~~Ln~---Ellr~~a-r~q~d~~~~irtntticlgki~~~-----l~~~~R~~vL~~aftralkdpf~paR~a~v~~ 470 (690)
T KOG1243|consen 400 LSKRNLNG---ELLRYLA-RLQPDEHGGIRTNTTICLGKIAPH-----LAASVRKRVLASAFTRALKDPFVPARKAGVLA 470 (690)
T ss_pred hchhhhcH---HHHHHHH-hhCccccCcccccceeeecccccc-----cchhhhccccchhhhhhhcCCCCCchhhhhHH
Confidence 7764 322 2233322 2322 2 2455555555555411 1111111 11222334455566778888877
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhc
Q 001062 666 MNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1167)
Q Consensus 666 L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1167)
+....+.+.. .+....+++.+.++.-+.+..++..++..+......
T Consensus 471 l~at~~~~~~---~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 471 LAATQEYFDQ---SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred Hhhcccccch---hhhhhhccccccccccCcccchhhHHHHHHHHHHhh
Confidence 7754432221 223455777777777888888999888887776654
No 189
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.02 E-value=0.46 Score=52.11 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh---H------HHHHHHHHHHhc--------CCCcchhcHH
Q 001062 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR---V------VEMTDKLCIKLL--------NGKDQHRDIA 104 (1167)
Q Consensus 42 ~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~---~------~~l~~~L~~~~~--------~~~~~~r~~a 104 (1167)
.....+++.++..++|.++++|-.+++|+..+..+++... + .-+-+.|...+. +....+-..+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 5677889999999999999999999999999999887665 2 223334444443 1111222344
Q ss_pred HHHHHHHHhhc---CCchhHHHHHHHHHHHHHHhhhccCC--ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhh
Q 001062 105 SIALKTIIAEV---TTSSLAQSIHTSLTPQLTKGITLKDM--NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQL 179 (1167)
Q Consensus 105 ~~aL~~~~~~~---~~~~~~~~~~~~i~p~Ll~~l~~~~~--~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l 179 (1167)
--+|..++.-. +.......+.+.+...+++.+..... .+.++...++.+..++..+|.....+...+++.+.+.+
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 44455544322 11111222223333335555544332 36778888888889998888887788888888888887
Q ss_pred cCCh
Q 001062 180 SANQ 183 (1167)
Q Consensus 180 ~~~~ 183 (1167)
+++.
T Consensus 275 ~npf 278 (282)
T PF10521_consen 275 ENPF 278 (282)
T ss_pred cCCC
Confidence 7653
No 190
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=1.2 Score=48.75 Aligned_cols=179 Identities=17% Similarity=0.133 Sum_probs=110.2
Q ss_pred chhcHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHH-HHHHHHHh
Q 001062 99 QHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDH-ERLLSALL 176 (1167)
Q Consensus 99 ~~r~~a~~aL~~~~~~~~~~~~~~~~~-~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~-~~l~~~ll 176 (1167)
+.+..+..=|...+++++.- ..++ -..++.++..+++. +..+|..|..+++..+.+.++.-.... ..-++.|+
T Consensus 98 e~ke~ald~Le~lve~iDnA---ndl~~~ggl~~ll~~l~~~--~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 98 EDKEDALDNLEELVEDIDNA---NDLISLGGLVPLLGYLENS--DAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhH---HhHhhccCHHHHHHHhcCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 34667777777777777651 1111 12234445566665 589999999999999998776432111 12567777
Q ss_pred hhhcCChH-HHHHHHHHHHHHHHhhcCHHH--HHHH--HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhh
Q 001062 177 PQLSANQA-SVRKKSVSCIASLASSLSDDL--LAKA--TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGD 251 (1167)
Q Consensus 177 ~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~--~~~l--~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~ 251 (1167)
..++.+.+ .+|.+|..|++++......-+ |..+ ...+...+++++.+...++.++.+++.+.......-.-.-+.
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 77776666 899999999999998876642 2111 334555566654445677888889998887644321111122
Q ss_pred hHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 001062 252 TVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 252 lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~ 284 (1167)
.++.....+... .+.++++.++.++-.++..
T Consensus 253 ~f~~~~~~l~~~--l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 253 GFQRVLENLISS--LDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhHHHHHHhhc--cchhhhHHHHHHHHHHHHH
Confidence 233333222221 5667888887776666543
No 191
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.94 E-value=9.1 Score=43.91 Aligned_cols=266 Identities=15% Similarity=0.191 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccC-------ChhhHHHHHHHHHHHHH--
Q 001062 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK-------SIKTKVGAFSVLRELVV-- 455 (1167)
Q Consensus 385 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~-------~~~~r~~~~~~l~~l~~-- 455 (1167)
.-|.+++.++...++...+. . ....+++.++.+++.+.+-+... +.+.-..|+++|+.+..
T Consensus 8 ~~r~daY~~l~~~l~~~~~~---------~-~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~ 77 (372)
T PF12231_consen 8 SSRLDAYMTLNNALKAYDNL---------P-DRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHP 77 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCC---------C-cHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccH
Confidence 34667777766666554321 0 11457788888888888877652 33455677887776642
Q ss_pred ----hcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCC--chHHHH
Q 001062 456 ----VLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGER--YYKVTA 529 (1167)
Q Consensus 456 ----~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~--~~~v~~ 529 (1167)
.++..+ ...++......+.+++.+..+...++.++.. ...++..+.......+-.++..+.+. ...+..
T Consensus 78 ~i~~~l~~d~---~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~ 152 (372)
T PF12231_consen 78 EIVSTLSDDF---ASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIIS 152 (372)
T ss_pred HHHhhCChHH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHH
Confidence 233332 3346777777887766544555555555553 23333333333333344444445542 347888
Q ss_pred HHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcc----------cccc
Q 001062 530 EALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDN----------LGAE 599 (1167)
Q Consensus 530 ~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~----------l~~~ 599 (1167)
+.+.++-.++..... .+..+...=++.++..+- +....+|.+|+...-.+...++.. +...
T Consensus 153 erL~i~~~ll~q~p~-------~M~~~~~~W~~~l~~~l~--~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~ 223 (372)
T PF12231_consen 153 ERLNIYKRLLSQFPQ-------QMIKHADIWFPILFPDLL--SSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRS 223 (372)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccc
Confidence 999999888865432 233333333333333333 234578888766666555555421 1110
Q ss_pred hh--hhHHHHHHhh----cCchhhHHHHHHHHHHh--cCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 001062 600 LP--ACLPVLVDRM----GNEITRLTAVKAFAVIA--ASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVV 671 (1167)
Q Consensus 600 ~~--~~l~~L~~~L----~~e~~r~~a~~al~~i~--~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~ 671 (1167)
+. .+...+.+++ .+...-..+.+.++.+. .+....+-.+++...+.........+|..+|..|+.|=..++.
T Consensus 224 ~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 224 LENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred cccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 10 1222333222 22122334566665443 1111123357788888888888889999999999999988887
Q ss_pred HhC
Q 001062 672 AYG 674 (1167)
Q Consensus 672 ~~~ 674 (1167)
...
T Consensus 304 ~~~ 306 (372)
T PF12231_consen 304 ASN 306 (372)
T ss_pred Hhc
Confidence 543
No 192
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=1.2 Score=50.75 Aligned_cols=182 Identities=15% Similarity=0.138 Sum_probs=104.7
Q ss_pred cchHHHHHHhcCC-ChhhHHHHHHHHHHhhhhcCcccchHHHHHHhhc--ccchhHHHHHHHHHHHhhccccchhhhhHH
Q 001062 851 EHIENVIIESFQS-PFEEIKSAASYALGNIAVGNLSKFLPFILDQIDN--QQKKQYLLLHSLKEVIVRQSVDKAEFQDSS 927 (1167)
Q Consensus 851 ~~~~~~l~~~l~~-~~e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~--~~~~~~~~l~aLkei~~~~~~~~~~~l~~~ 927 (1167)
++..+-++..-.. .++.+.+..+..++-+..+.- +..-.+++.+.. ++--||-=+.++.-.- ++.. .
T Consensus 480 ~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrq-e~add~I~ell~d~ds~lRy~G~fs~alAy--~GTg---n---- 549 (926)
T COG5116 480 VEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQ-EMADDYINELLYDKDSILRYNGVFSLALAY--VGTG---N---- 549 (926)
T ss_pred HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhH-HHHHHHHHHHhcCchHHhhhccHHHHHHHH--hcCC---c----
Confidence 3444444444433 367777766655554443322 222223333332 3334554333332111 1221 1
Q ss_pred HHHHHHHHHhh-ccCCccchhhHHHHHhhhccccCcccchHHHHHhhc-CCChhhHHHHHHHHHHHhccCChhhhhhhhH
Q 001062 928 VEKILNLLFNH-CESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTT-SSAAFTRATVVIAIKYSIVERPEKIDEIIFP 1005 (1167)
Q Consensus 928 ~~~i~~~L~~~-~~~~~e~vr~~aa~~Lg~l~~~~~~~~lp~l~~~~~-~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~ 1005 (1167)
..+...++.. .++.+++||++|.-+||-+|.-++. .+|...+.+. +-++.+|+-+..++.-.+...+..
T Consensus 550 -~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------- 620 (926)
T COG5116 550 -LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------- 620 (926)
T ss_pred -chhHhhhheeecccCchHHHHHHHHheeeeEecCcc-hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------
Confidence 1233334433 4566789999999999999998884 4555666554 578999999988898887766531
Q ss_pred hHHHHHh-hccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHH
Q 001062 1006 EISSFLM-LIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLL 1051 (1167)
Q Consensus 1006 ~i~~~l~-~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~~l~~llp~L 1051 (1167)
....+|. .+.|++.-||+.|+.+++.+.......+.|.+..+...+
T Consensus 621 ~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f 667 (926)
T COG5116 621 VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKF 667 (926)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHH
Confidence 1223444 445888889999999999876544444455555554433
No 193
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=2.7 Score=49.50 Aligned_cols=182 Identities=13% Similarity=0.140 Sum_probs=106.4
Q ss_pred HHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHH----HHHHHhcCCCChhHHHHHHHHHH----HhhhhcChhhH
Q 001062 11 EKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLS----NIVVQQLDDVAGDVSGLAVKCLA----PLVKKVSEPRV 82 (1167)
Q Consensus 11 ~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~----~~ll~~L~d~~~~Vr~~A~~~l~----~l~~~~~~~~~ 82 (1167)
..++-+.-.+|--|+.-+-+...-..........+.++ ..+..+|.|+-+.||+.|.+-+. .++.-+++..+
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~ 260 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTIL 260 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 33455666777766666655443322222123334443 45778899999999999876554 44556677777
Q ss_pred HHHHHHHHHHhcC-CCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc
Q 001062 83 VEMTDKLCIKLLN-GKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 83 ~~l~~~L~~~~~~-~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
.+++.+++..+.. ...++|-..--+|-.+..+ +...++++.++|.+-..|.|+ +..||..++++|..+-..-.
T Consensus 261 ~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n----p~sh~~le~~Lpal~~~l~D~--se~VRvA~vd~ll~ik~vra 334 (1005)
T KOG1949|consen 261 IDLLKKITDELAFDTSSDVRCSVFKGLPMILDN----PLSHPLLEQLLPALRYSLHDN--SEKVRVAFVDMLLKIKAVRA 334 (1005)
T ss_pred HHHHHHHHHHhhhccchheehhHhcCcHHHHcC----ccchhHHHHHHHhcchhhhcc--chhHHHHHHHHHHHHHhhhh
Confidence 7777777766653 3445565444444444332 234567888999888888875 58899999999886643322
Q ss_pred cchhHHHHHHHHHHhhhhcCChHHHHHH-HHHHHHHHHhh
Q 001062 162 NLMSNDHERLLSALLPQLSANQASVRKK-SVSCIASLASS 200 (1167)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~~~~~vrk~-a~~~l~~l~~~ 200 (1167)
..+ ..---++.++..|..++..+-++ +.-.+....+.
T Consensus 335 ~~f--~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~ 372 (1005)
T KOG1949|consen 335 AKF--WKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPV 372 (1005)
T ss_pred hhh--hccccHHHHHHHHhccccHHHHHHHHHHHHhhcCC
Confidence 111 11112445566665555444444 33333333333
No 194
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.79 E-value=0.66 Score=52.27 Aligned_cols=145 Identities=17% Similarity=0.265 Sum_probs=88.6
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccC----CC-CchHHHHHHHHHHHHhccCC
Q 001062 427 IVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK----SS-TSNLKIEALTFTRLVLSSHS 501 (1167)
Q Consensus 427 l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~----~~-~~~~~~~al~~l~~l~~~~~ 501 (1167)
.+..+.+.+.+.+...|..++.-|.+ .. .+.+++|.+...+.+. .. +.......+.++..++.+-.
T Consensus 179 yf~~It~a~~~~~~~~r~~aL~sL~t-----D~----gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~ 249 (343)
T cd08050 179 YFEEITEALVGSNEEKRREALQSLRT-----DP----GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN 249 (343)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcc-----CC----CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence 34444444545666666666543322 12 2555555555555432 11 22334445667777777632
Q ss_pred CCchhhhhHhhHHHHHHHh----------cCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcC
Q 001062 502 PPVFHPYIKALSSPVLAAV----------GERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ 571 (1167)
Q Consensus 502 ~~~~~~~l~~ll~~l~~~l----------~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~ 571 (1167)
-.+.+|+.+|+|.++.|+ .+.++.+|..|..+++.+++.++.. +...-+.++..+.+.+.+.
T Consensus 250 -l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~-------y~~l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 250 -LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS-------YNTLQPRITRTLLKALLDP 321 (343)
T ss_pred -CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC-------CCcHHHHHHHHHHHHHcCC
Confidence 356789999999999998 2456799999999999999887652 3334556666777777654
Q ss_pred CCCHHHHHHHHHHHHHH
Q 001062 572 DQDQEVKECAISCMGLV 588 (1167)
Q Consensus 572 d~~~~vr~~Ai~alg~l 588 (1167)
.......-.|+.+++.+
T Consensus 322 ~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 322 KKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCCcchhhHHHHHHHHh
Confidence 44334455566655544
No 195
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.77 E-value=12 Score=44.46 Aligned_cols=432 Identities=14% Similarity=0.165 Sum_probs=220.0
Q ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCC
Q 001062 143 TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG 221 (1167)
Q Consensus 143 ~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~ 221 (1167)
-..|..+++-|.+.+..+.. ...+.+....-..+....+ ..|+.+...+..++..-.... ...-......+.++.
T Consensus 4 l~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~-~~~R~~fF~~I~~~~ 79 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS-GLMRAEFFRDISDPS 79 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc-HHHHHHHHHHHhcCC
Confidence 34577777778777777755 4556666666666655555 899999999998887654410 011112223334333
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC-cc------ccccHH
Q 001062 222 AKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP-RD------ISSYCD 294 (1167)
Q Consensus 222 ~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~-~~------~~~~l~ 294 (1167)
. ++....-++++.++.+ .|+.+..+-..+.|++...+.. --..++.+-...-.. ...+ .. -...+.
T Consensus 80 ~-~~d~~~~l~aL~~LT~-~Grdi~~~~~~i~~~L~~wl~~---~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 80 N-DDDFDLRLEALIALTD-NGRDIDFFEYEIGPFLLSWLEP---SYQAARSARRKAKKS--SSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred C-chhHHHHHHHHHHHHc-CCcCchhcccchHHHHHHHHHH---HHHHHHHHHHHhhcc--ccccccccccccchhhhHH
Confidence 2 2334455666666665 3556666667777877776654 111111110000000 0000 00 123566
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhH
Q 001062 295 EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPK 374 (1167)
Q Consensus 295 ~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~ 374 (1167)
+++.++...++|+.++.+++ +..+ +...++..
T Consensus 153 ~ll~~l~nviKfn~~~l~e~-------------------------~i~~-----------------------lv~~i~~i 184 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDED-------------------------EISS-----------------------LVDQICTI 184 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHH-------------------------HHHH-----------------------HHHHHHHH
Confidence 77778888888766543210 0001 11111111
Q ss_pred HHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHH
Q 001062 375 LIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELV 454 (1167)
Q Consensus 375 L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~ 454 (1167)
+.+-..+..-..++..+.+++.... -| .+.++.++..+....+.. +..+.++.++..|+
T Consensus 185 ---C~~Ts~~~di~~~L~vldaii~y~~------------iP----~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~ 243 (464)
T PF11864_consen 185 ---CKSTSSEDDIEACLSVLDAIITYGD------------IP----SESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLL 243 (464)
T ss_pred ---HhccCcHHHHHHHHHHHHHHHHcCc------------CC----hHHHHHHHHHHhhHhccc--ccchhHHHHHHHHH
Confidence 1223334444567777777776432 13 234456666666554433 45556778888887
Q ss_pred HhcCchhHhhhhhhHHHHHHhc--ccCC--CCchHHHHHHHHHHHHhccCCCCchhh-hhHh--hHHHHHHHhcCCchHH
Q 001062 455 VVLPDCLADHIGSLIPGIEKSL--NDKS--STSNLKIEALTFTRLVLSSHSPPVFHP-YIKA--LSSPVLAAVGERYYKV 527 (1167)
Q Consensus 455 ~~~~~~l~~~l~~l~~~l~~~l--~d~~--~~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~--ll~~l~~~l~d~~~~v 527 (1167)
..+- -...+..++..| .+.. .+..+...|+.+++.++-..+.+.+.. .+.. ++|.+..+++.++..|
T Consensus 244 ~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v 317 (464)
T PF11864_consen 244 KSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRV 317 (464)
T ss_pred cCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCee
Confidence 5332 234455666666 2221 123344578888888876654444332 2344 8999999998777788
Q ss_pred HHHHHHHHHHHH-HhccCCccccCCCCccchHHHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHHHHhcC--cccc
Q 001062 528 TAEALRVCGELV-RVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQD-------QEVKECAISCMGLVISTFG--DNLG 597 (1167)
Q Consensus 528 ~~~al~~l~~l~-~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~-------~~vr~~Ai~alg~l~~~~g--~~l~ 597 (1167)
..+.+..+..++ +.++.... ..+... +-.++..+...+...+.. ..++ ..+.-+...++.+- ..+.
T Consensus 318 ~~eIl~~i~~ll~~~~~~~l~--~~~W~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ie~L~~~~~~~ 393 (464)
T PF11864_consen 318 DYEILLLINRLLDGKYGRELS--EEDWDI-ILDIIEEIFDKIQPFDSWYSNSSSLDQLS-SNLHSLLSSIESLYEQHDFN 393 (464)
T ss_pred hHHHHHHHHHHHhHhhhhhhc--ccCchH-HHHHHHHHHhhccccccccccccchHHHH-HHHHHHHHHHHHHHhCCCcC
Confidence 888888888877 44433210 111222 223333344444321111 1122 11222222233321 1233
Q ss_pred cchhhhHHHHHHhhcCchhhHHHHHHHHHHhc--CCCCCchhhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Q 001062 598 AELPACLPVLVDRMGNEITRLTAVKAFAVIAA--SPLHIDLTCVLEHVIAELTAFL-RKANRALRQATLGTMNS 668 (1167)
Q Consensus 598 ~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~--~~~~~~~~~~~~~~l~~L~~~L-~~~~~~lr~~al~~L~~ 668 (1167)
...+.++..+.+....-+ -..+...+-.-.. .+.. ..|+..+...+-.|. +..+..+|..++..+..
T Consensus 394 g~~~~~~~f~~~~~~~lp-~s~~~~vl~~~~~~~~Ps~---~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e 463 (464)
T PF11864_consen 394 GPKDKLFNFFERVHSYLP-DSSALLVLFYEERSCSPSN---PDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEE 463 (464)
T ss_pred ccHHHHHHHHHHHhccCC-HHHHHHHHHHHhcccCCCC---hHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhh
Confidence 345667777766432211 1122333311111 1112 457777777677777 44567788888877654
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.75 E-value=0.28 Score=59.79 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=109.3
Q ss_pred cCCChhHHhHhHHHHHHHhcccccCCCh--HHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhhhhcChhhHH----HHH
Q 001062 14 TGKDKDFRYMATSDLLNELNKESFKADA--DLEVKLSNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSEPRVV----EMT 86 (1167)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~--~~~~~i~~~ll~~L~d-~~~~Vr~~A~~~l~~l~~~~~~~~~~----~l~ 86 (1167)
.+.+++-|.||.+-|...... |+... -....++...+..|+| +.+-.|+=.+-|||.|+..+.+..|. .-.
T Consensus 567 ~~~~~EqrtmaAFVLAviv~n--f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRN--FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcc--cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 345678999999999988864 55443 3446788889999998 57999999999999999888776664 347
Q ss_pred HHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh
Q 001062 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTTS-SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1167)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~-~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~ 165 (1167)
++|+..+.++-+++|..|.+||++++.+...+ +-...+++.++- |.+ .+++.+
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~-----l~~----~~~~~E----------------- 698 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEID-----LDD----ERTSIE----------------- 698 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhc-----chh----hhhhHH-----------------
Confidence 88999999999999999999999999875432 001111111111 000 011100
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC
Q 001062 166 NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS 202 (1167)
Q Consensus 166 ~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~ 202 (1167)
.........++..+++..+.+|+....+++.++....
T Consensus 699 ~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 699 DLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred HHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 0111111245666778888999998888888876443
No 197
>PF05536 Neurochondrin: Neurochondrin
Probab=94.72 E-value=13 Score=44.76 Aligned_cols=232 Identities=16% Similarity=0.177 Sum_probs=143.9
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHH--------HHHHHHHHHhcCC----CChhHHHHHHHHHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLE--------VKLSNIVVQQLDD----VAGDVSGLAVKCLAP 72 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~--------~~i~~~ll~~L~d----~~~~Vr~~A~~~l~~ 72 (1167)
.+...+.-+++.|..-||+|+.-+.+.+.... .+.... .+++++|++.-.. +...-+..|+..+..
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~--~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADD--EDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCch--hhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 44555566788887789999999999887422 111222 2445666655443 335678888888887
Q ss_pred hhh--h-cChhhHHHHHHHHHHHhcCCCc-chhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHH
Q 001062 73 LVK--K-VSEPRVVEMTDKLCIKLLNGKD-QHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCE 148 (1167)
Q Consensus 73 l~~--~-~~~~~~~~l~~~L~~~~~~~~~-~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~ 148 (1167)
+.. . ...+.+..-+|.|.+.+.+... ...+-+..+|..++ ..+.. ...-+-...+|.|.+.+.+ .+...+.
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G-~~aLl~~g~v~~L~ei~~~---~~~~~E~ 158 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEG-AKALLESGAVPALCEIIPN---QSFQMEI 158 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHh-HHHHHhcCCHHHHHHHHHh---CcchHHH
Confidence 775 1 1234566778888888877655 44455556666666 33331 1111122355666666654 3567889
Q ss_pred HHHHHHHHHHHhccchh----HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH---------HHHHHHHHHHHH
Q 001062 149 CLDILCDVLHKFGNLMS----NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD---------DLLAKATIEVVR 215 (1167)
Q Consensus 149 ~~~~L~~l~~~~g~~l~----~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~---------~~~~~l~~~l~~ 215 (1167)
++.+|..++...+...- .....+++.+-..+...+...|-..+.-++.+....+. ....++...+-.
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 99999999888775332 23334555555555554455666677777777665531 124556666666
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHhhhh
Q 001062 216 NLRSKGAKPEMIRTNIQMVGALSRAVGYR 244 (1167)
Q Consensus 216 ~l~~~~~~~~~r~~~~~~l~~l~~~~~~~ 244 (1167)
.+++. .....|..++.+.+.+....|.+
T Consensus 239 iL~sr-~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 239 ILQSR-LTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHhcC-CCHHHHHHHHHHHHHHHHHhChH
Confidence 66553 34678999999999999986643
No 198
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.46 Score=53.98 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=104.2
Q ss_pred hcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHH
Q 001062 13 ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQ-LDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCI 91 (1167)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~-L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~ 91 (1167)
..|.|+-+||.....+.-.--. .....++..|+.. .+|.|.+||++|+-.||-+.- .+. ..+....+
T Consensus 525 l~d~ds~lRy~G~fs~alAy~G-------Tgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~D~---~~lv~tve 592 (926)
T COG5116 525 LYDKDSILRYNGVFSLALAYVG-------TGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC--DDR---DLLVGTVE 592 (926)
T ss_pred hcCchHHhhhccHHHHHHHHhc-------CCcchhHhhhheeecccCchHHHHHHHHheeeeEe--cCc---chhhHHHH
Confidence 3556677777665555432211 1234678888876 899999999999999986542 221 22222333
Q ss_pred Hhc-CCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHH
Q 001062 92 KLL-NGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHER 170 (1167)
Q Consensus 92 ~~~-~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~ 170 (1167)
.++ +-+.++|-+.+.||+-.|.+.... ++-.++..|.. ++..-||..|+-.++-++-.+.+.+.|....
T Consensus 593 lLs~shN~hVR~g~AvaLGiacag~G~~-----~a~diL~~L~~-----D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~ 662 (926)
T COG5116 593 LLSESHNFHVRAGVAVALGIACAGTGDK-----VATDILEALMY-----DTNDFVRQSAMIAVGMILMQCNPELNPNVKR 662 (926)
T ss_pred HhhhccchhhhhhhHHHhhhhhcCCccH-----HHHHHHHHHhh-----CcHHHHHHHHHHHHHHHHhhcCcccChhHHH
Confidence 333 456789999999999999887662 33444444443 3356799999999999999999999999999
Q ss_pred HHHHHhhhhcCCh
Q 001062 171 LLSALLPQLSANQ 183 (1167)
Q Consensus 171 l~~~ll~~l~~~~ 183 (1167)
+.+.+.+.+.+.+
T Consensus 663 I~k~f~~vI~~Kh 675 (926)
T COG5116 663 IIKKFNRVIVDKH 675 (926)
T ss_pred HHHHHHHHHhhhh
Confidence 9999988886643
No 199
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.53 E-value=2.2 Score=50.84 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=111.3
Q ss_pred ccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchh--hHHHHHHHHHHhcCC
Q 001062 554 KPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEIT--RLTAVKAFAVIAASP 631 (1167)
Q Consensus 554 ~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~--r~~a~~al~~i~~~~ 631 (1167)
..|...++|.+...++..+. -++.-.-+.-+..+...... ......++|+|...++++++ .+.+++.+..++..
T Consensus 344 ~~~~~~~~p~l~pi~~~~~~-~~~~l~i~e~mdlL~~Kt~~--e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~- 419 (700)
T KOG2137|consen 344 NEFGPKMLPALKPIYSASDP-KQALLFILENMDLLKEKTPP--EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAES- 419 (700)
T ss_pred hhhhhhhhHHHHHHhccCCc-ccchhhHHhhHHHHHhhCCh--HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh-
Confidence 34566677777666653222 12222222222223322221 12578899999999988764 46788888888754
Q ss_pred CCCchhhHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHH
Q 001062 632 LHIDLTCVLEHVIAELTAF-LRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCT 710 (1167)
Q Consensus 632 ~~~~~~~~~~~~l~~L~~~-L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~ 710 (1167)
.|+.-.-..++|.+..+ +...+-.++.+++.|++.++++... ..+.+.+..+..-+...|+.+.-..+.+...
T Consensus 420 --iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~----~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~ 493 (700)
T KOG2137|consen 420 --IDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK----AAVLDELLPILKCIKTRDPAIVMGFLRIYEA 493 (700)
T ss_pred --ccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 33333345577777655 3456889999999999999976542 2222222222233345666665555555555
Q ss_pred HhhcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHH
Q 001062 711 LMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAAL 757 (1167)
Q Consensus 711 l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l 757 (1167)
+.-. .+...+...+.++|-++-+.-.+.+....+.-....++.+
T Consensus 494 l~~~---~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i~~m 537 (700)
T KOG2137|consen 494 LALI---IYSGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEIRLM 537 (700)
T ss_pred HHhh---cccceeeehhhhhhhhhhhhhcccccHHHHHHHHHHHHHH
Confidence 5544 4442344678899998887766666665554444444443
No 200
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=1.1 Score=47.81 Aligned_cols=163 Identities=16% Similarity=0.199 Sum_probs=104.2
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHH
Q 001062 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLK 421 (1167)
Q Consensus 342 sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~ 421 (1167)
.|.+.--+...+..++..+++.+...+..++..+++.++...-.|...++.+++.+..... ..+.
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln---------------~~i~ 165 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN---------------NSID 165 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 3888888888899999999999999999999999988887777888888889988887654 2334
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhc-CchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccC
Q 001062 422 QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL-PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1167)
Q Consensus 422 ~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~-~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1167)
+.+..++..+...-...+.=+|..+..+|.+++... |..+ ++.++|. +... ...++..++.++...+...
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~---L~~L~~~----~~~~--n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKL---LRKLIPI----LQHS--NPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHH---HHHHHHH----Hhhh--chhhhhhhhccccccceec
Confidence 445555544443333334457888999999988754 3333 4444444 4333 2345555444444433333
Q ss_pred C-CCchhhhhHhhHHHHHHHhcCCchHHH
Q 001062 501 S-PPVFHPYIKALSSPVLAAVGERYYKVT 528 (1167)
Q Consensus 501 ~-~~~~~~~l~~ll~~l~~~l~d~~~~v~ 528 (1167)
+ +....+++..+++.+..-..|+.+..+
T Consensus 237 ~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~ 265 (334)
T KOG2933|consen 237 GVLPVLLQGSCDLSRAAQEQGSDKLPELR 265 (334)
T ss_pred cccchhhHhHHHHHHHHHhhhcccccccc
Confidence 2 122234555666666666666655444
No 201
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.44 E-value=1.5 Score=50.44 Aligned_cols=148 Identities=15% Similarity=0.190 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCC------CCchHHHHHHHHHHHHhc
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKS------STSNLKIEALTFTRLVLS 498 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~------~~~~~~~~al~~l~~l~~ 498 (1167)
.-.++-+.+.+.+.++..|+.|++.|.+ ..+ +..++|.+...+.+.- .+-.+-+..+..+.++++
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~T-----DsG----L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLET-----DSG----LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc-----Ccc----HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 3344445555556788899999876543 223 4444444444444321 122344455566777777
Q ss_pred cCCCCchhhhhHhhHHHHHHHhc----------CCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHh
Q 001062 499 SHSPPVFHPYIKALSSPVLAAVG----------ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRL 568 (1167)
Q Consensus 499 ~~~~~~~~~~l~~ll~~l~~~l~----------d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 568 (1167)
+- .-.+.+|+..++|.++.|+- |++|.+|--|..++..+++.++. .+...-..+...+...+
T Consensus 277 Np-~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~-------~y~~L~~Rit~tl~k~l 348 (576)
T KOG2549|consen 277 NP-NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFST-------LYNNLQPRITRTLSKAL 348 (576)
T ss_pred CC-ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHHh
Confidence 52 23457899999999999972 56788999999999999987654 23334455666666666
Q ss_pred hcCCCCHHHHHHHHHHHHHHH
Q 001062 569 TNQDQDQEVKECAISCMGLVI 589 (1167)
Q Consensus 569 ~~~d~~~~vr~~Ai~alg~l~ 589 (1167)
.+...+..-.-.|+.+|..+.
T Consensus 349 ~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 349 LDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred cCCCCCchhhhhHHHHHHHhh
Confidence 554444444555555555543
No 202
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=0.47 Score=52.43 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=98.4
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhh
Q 001062 429 KSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPY 508 (1167)
Q Consensus 429 ~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 508 (1167)
+-+..+++.-+.++|..++.-+..+....|..+..|...+++.+...+.|. +..+|.....++..++....++...|+
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~--~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDD--DSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCc--cccHHHHHHHHHHHHHhhcchhhhcch
Confidence 344556777789999999999999888888888889999999999999887 467899999999998877777778899
Q ss_pred hHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 001062 509 IKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1167)
Q Consensus 509 l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1167)
+.-+++.+..++..-.+.++..++..+.-++..+.|
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 999999999999998899999999999999887655
No 203
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.38 E-value=0.36 Score=53.88 Aligned_cols=168 Identities=11% Similarity=0.225 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhh----hccCChhHH-HHHHHHHHHHHHhhCCCCCCccCCCCCchHH
Q 001062 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDR----FKEREENVK-MDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1167)
Q Consensus 344 ~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~----l~d~~~~vr-~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~ 418 (1167)
.+|+.-.+++...+...++ ...+...++|.+++. .+...+..| .+++..++++++..+..- . .
T Consensus 42 ~iKkeIL~Li~t~i~~~~~-~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~---------~--~ 109 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAED-PEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI---------Q--P 109 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S--HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC---------C--C
T ss_pred HHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh---------h--h
Confidence 4667778888888887663 223555666655543 334445555 467888999998876310 0 1
Q ss_pred HHHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHHHhcCchh----HhhhhhhHHHHHHhcccCCCCchHHHHHHH
Q 001062 419 LLKQEVSKIVKSINRQLRE---KSIKTKVGAFSVLRELVVVLPDCL----ADHIGSLIPGIEKSLNDKSSTSNLKIEALT 491 (1167)
Q Consensus 419 ~l~~~~~~l~~~l~~~L~~---~~~~~r~~~~~~l~~l~~~~~~~l----~~~l~~l~~~l~~~l~d~~~~~~~~~~al~ 491 (1167)
.+...+..++......+++ .-|+.|..-+.++..+.+.++..+ .+.+..++..+..++++. ..++...++.
T Consensus 110 ~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~--~~~I~~~~L~ 187 (319)
T PF08767_consen 110 QVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT--NREISETGLN 187 (319)
T ss_dssp CHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS--SHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC--cHHHHHHHHH
Confidence 2233344444455555544 247899999999999999887765 346788888999998866 5688899999
Q ss_pred HHHHHhccCCC---Cc----hhhhhHhhHHHHHHHhcCCch
Q 001062 492 FTRLVLSSHSP---PV----FHPYIKALSSPVLAAVGERYY 525 (1167)
Q Consensus 492 ~l~~l~~~~~~---~~----~~~~l~~ll~~l~~~l~d~~~ 525 (1167)
.+..+++.... +. ++.|.-.++..+...+.|..+
T Consensus 188 ~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~H 228 (319)
T PF08767_consen 188 ILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDH 228 (319)
T ss_dssp HHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 98888865432 11 223445566666666666654
No 204
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=94.25 E-value=0.51 Score=56.37 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhhhcCC--hHHHHHHHHHHH---HHHHhhcCHHHHHHHHHHHHHHhhcC----------CCChHHHHHHH
Q 001062 167 DHERLLSALLPQLSAN--QASVRKKSVSCI---ASLASSLSDDLLAKATIEVVRNLRSK----------GAKPEMIRTNI 231 (1167)
Q Consensus 167 ~~~~l~~~ll~~l~~~--~~~vrk~a~~~l---~~l~~~~~~~~~~~l~~~l~~~l~~~----------~~~~~~r~~~~ 231 (1167)
..+.+++++...+.++ ...+|..+++.+ .....+++...+..+-+.+...+..- ..+...|..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 4577888888888777 568999999999 99999999988777777776554221 12467889999
Q ss_pred HHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC
Q 001062 232 QMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1167)
Q Consensus 232 ~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~ 286 (1167)
+++|.+++..|.-|..- -.++..+++.+.. +++|+|-+.-+++.+|+..++
T Consensus 396 e~lG~L~~~~p~l~~~d-~~li~~LF~sL~~---~~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFSKD-LSLIEFLFDSLED---ESPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred HHHHHHHccCccccccc-HHHHHHHHHHhhC---cchHHHHHHHHHHHHHHHHHh
Confidence 99999999998877443 3577888888866 789999999999999987765
No 205
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.15 E-value=41 Score=48.06 Aligned_cols=137 Identities=19% Similarity=0.257 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCch---hHhhhh
Q 001062 390 VFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC---LADHIG 466 (1167)
Q Consensus 390 ~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~---l~~~l~ 466 (1167)
-+..+.++.+..|+++. +.-...+-+.+|.+++.+...+.... ++.--.++.+++.+.|-. +.||++
T Consensus 651 Yf~LLraLFRsigGg~~-------d~ly~e~lplL~~lLe~ln~l~~~~~---s~~mkdLfvELclTvPvRLS~Llpylp 720 (3550)
T KOG0889|consen 651 YFQLLRALFRSIGGGAF-------DSLYREVLPLLPNLLEILNHLLSSFH---SQGMKDLFVELCLTLPVRLSSLLPYLP 720 (3550)
T ss_pred HHHHHHHHHHHhhccch-------HhHHHHHHHHHHHHHHHHHHHhhccC---ccchHHHHHHHHHhhhHHHHHhhhhhh
Confidence 45566777777765321 00001122344555555555554332 223335666777777754 468999
Q ss_pred hhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHh----cCC-chHHHHHHHHHHHHHH
Q 001062 467 SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAV----GER-YYKVTAEALRVCGELV 539 (1167)
Q Consensus 467 ~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l----~d~-~~~v~~~al~~l~~l~ 539 (1167)
.++..+..+|+.. ..+...++..+--.+.+..|+.+.|.+++..+.+..++ .+. ++.+...|++++|.+-
T Consensus 721 ~LM~PLv~aLkgs---~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILGKlg 795 (3550)
T KOG0889|consen 721 LLMKPLVFALKGS---PELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILGKLG 795 (3550)
T ss_pred hhhhHHHHHhcCC---HHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhc
Confidence 9999999999854 57888999999888888888877777766666666655 332 5677778899998874
No 206
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=15 Score=42.86 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=67.2
Q ss_pred chhhhhHhhHHHHHHHhc------------CCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcC
Q 001062 504 VFHPYIKALSSPVLAAVG------------ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ 571 (1167)
Q Consensus 504 ~~~~~l~~ll~~l~~~l~------------d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~ 571 (1167)
.|+||..+++..+...++ ++....|.....++-++...+|.. ..+..+..++..+
T Consensus 333 ~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~-------------e~lk~~~~~l~e~ 399 (559)
T KOG2081|consen 333 IFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSD-------------ECLKQMYIRLKEN 399 (559)
T ss_pred HhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcH-------------HHHHHHHHHHccC
Confidence 577888888888887765 122355666666666666555552 2333344455445
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcC----chhhHHHHHHHHHHh
Q 001062 572 DQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGN----EITRLTAVKAFAVIA 628 (1167)
Q Consensus 572 d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~----e~~r~~a~~al~~i~ 628 (1167)
+.+.+.-++|+.++..++.+.. +.-.+++|.+++.+-| ...|.+++-.+|.+.
T Consensus 400 ~~~We~~EAaLF~l~~~~~~~~----~~e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ 456 (559)
T KOG2081|consen 400 NASWEEVEAALFILRAVAKNVS----PEENTIMPEVLKLICNLPEQAPLRYTSILLLGEYS 456 (559)
T ss_pred CCchHHHHHHHHHHHHHhccCC----ccccchHHHHHHHHhCCccchhHHHHHHHHHHHHH
Confidence 6678999999999999885543 4444445554443322 235777777777664
No 207
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.11 E-value=2.4 Score=48.82 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=85.6
Q ss_pred HHHHHHHh-hcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChH
Q 001062 106 IALKTIIA-EVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA 184 (1167)
Q Consensus 106 ~aL~~~~~-~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~ 184 (1167)
.-|+++++ .++.++-+..++.-++-.++.|+.++ +..||..++.+|.-+..+.++.=......++..+.+-+-+.++
T Consensus 69 ~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~esk--dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~ 146 (885)
T COG5218 69 SFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESK--DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREK 146 (885)
T ss_pred HHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCc--chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchH
Confidence 33555565 44443334556666677778888776 5889999999999999988875445677788888888878888
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001062 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1167)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l 234 (1167)
.||..|+.||+.+-..-+++. +.+...+...++..+ ..++|+.++.-+
T Consensus 147 ~VR~eAv~~L~~~Qe~~~nee-n~~~n~l~~~vqnDP-S~EVRr~allni 194 (885)
T COG5218 147 AVRREAVKVLCYYQEMELNEE-NRIVNLLKDIVQNDP-SDEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHHHHHHhccCChH-HHHHHHHHHHHhcCc-HHHHHHHHHHHe
Confidence 999999999999887655542 122223333344433 358888776443
No 208
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=0.39 Score=56.04 Aligned_cols=149 Identities=19% Similarity=0.241 Sum_probs=107.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 001062 514 SPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 593 (1167)
Q Consensus 514 ~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g 593 (1167)
|.+..+++-+++.|+..|+.++-++.-..+|..- ..+....++.=+..+...+. |..+.||..|+..+..+...+.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~--~e~mD~i~~kQf~~l~~LL~--d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLH--AEEMDSIIQKQFEELYSLLE--DPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCcc--HHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHH
Confidence 5667788888999999999988887654444310 11223334444444555554 5668999999999988887777
Q ss_pred ccccc-chhhhHHHHHHhhcCc---hhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001062 594 DNLGA-ELPACLPVLVDRMGNE---ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSL 669 (1167)
Q Consensus 594 ~~l~~-~~~~~l~~L~~~L~~e---~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l 669 (1167)
+.+.+ .+-.++.-+.+-+..+ .+|..+...+..++..+.+ .+.+..++|.|...+.++...+|.+....|..|
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s---h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS---HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc---hhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 66655 5566666666655443 4688888899988865544 678889999999989999999999999888766
No 209
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=93.82 E-value=10 Score=42.98 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=64.4
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHH
Q 001062 111 IIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKS 190 (1167)
Q Consensus 111 ~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a 190 (1167)
++..++.......+++.+.|.+-+ +.++.+....+++++.=+..++.. .-+.+++.+.+.+++.++.+|+.-
T Consensus 10 ~L~~l~~~~~s~~i~~~l~~~~~K-----E~nE~aL~~~l~al~~~~~~~~~~---~~~~~~~~~~kGl~~kk~~vR~~w 81 (339)
T PF12074_consen 10 MLSSLPSSSLSSKIVQGLSPLLSK-----ESNEAALSALLSALFKHLFFLSSE---LPKKVVDAFKKGLKDKKPPVRRAW 81 (339)
T ss_pred HHHhCCCcchHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHhCcC---CCHHHHHHHHHHhcCCCCcHHHHH
Confidence 334444323445566666666533 335666666777776666665333 346778888889999988999999
Q ss_pred HHHHHHHHh----hcCHHHHHHHHHHHHHHhh
Q 001062 191 VSCIASLAS----SLSDDLLAKATIEVVRNLR 218 (1167)
Q Consensus 191 ~~~l~~l~~----~~~~~~~~~l~~~l~~~l~ 218 (1167)
+.+++.... .........+++.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 82 LLCLGEALWESPNSDSLKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHHH
Confidence 999999876 2233345566666666553
No 210
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=11 Score=40.31 Aligned_cols=194 Identities=13% Similarity=0.170 Sum_probs=119.9
Q ss_pred CCCChhHHHHHHHHHHHhhhhc-ChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc---hhHHHHHHHHHHH
Q 001062 56 DDVAGDVSGLAVKCLAPLVKKV-SEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS---SLAQSIHTSLTPQ 131 (1167)
Q Consensus 56 ~d~~~~Vr~~A~~~l~~l~~~~-~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~---~~~~~~~~~i~p~ 131 (1167)
+..+.+--...+.|+..|.+.. +....+.+++.|-.++..++..++..++..+..++++++.+ +....+-..|+|.
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 3444455556888999888643 34445678888888887777778888888888899998865 2233344567788
Q ss_pred HHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCC-----------hHHHHHHHHHHHHHHHhh
Q 001062 132 LTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSAN-----------QASVRKKSVSCIASLASS 200 (1167)
Q Consensus 132 Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~-----------~~~vrk~a~~~l~~l~~~ 200 (1167)
++.-+... +.+|...+++.+..+... +.-++.+++.-..+ +..+|-|....+-.+...
T Consensus 133 ildcIgge--ddeVAkAAiesikrialf---------paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi 201 (524)
T KOG4413|consen 133 ILDCIGGE--DDEVAKAAIESIKRIALF---------PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI 201 (524)
T ss_pred HHHHHcCC--cHHHHHHHHHHHHHHHhc---------HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc
Confidence 87766543 578888998888776522 12222222211111 124555666655555544
Q ss_pred cCHHH----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH-hhhhhhcchhhhHHHHHHHhhh
Q 001062 201 LSDDL----LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA-VGYRFGPHLGDTVPVLIDYCTS 262 (1167)
Q Consensus 201 ~~~~~----~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~-~~~~~~p~l~~lvp~l~~~l~~ 262 (1167)
.+... -.-++..+...++... +.-++..++..+..++.+ .+..|-|. ..++..+.+.+.-
T Consensus 202 SpesaneckkSGLldlLeaElkGte-DtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsG 266 (524)
T KOG4413|consen 202 SPESANECKKSGLLDLLEAELKGTE-DTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISG 266 (524)
T ss_pred CHHHHhHhhhhhHHHHHHHHhcCCc-ceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhC
Confidence 43321 2335555666665543 346788889999999886 44455543 4467777766654
No 211
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.77 E-value=1.3 Score=49.93 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=80.5
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhc----CCCChhHHHHHHHHHHHHHHh
Q 001062 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA----SENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 209 l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~----~e~~~e~re~al~~l~~l~~~ 284 (1167)
+...+...+.+.+ ...|..+++.+. -.|.+..++|++..++... -+.+-.+-...+++..+++.+
T Consensus 179 yf~~It~a~~~~~--~~~r~~aL~sL~---------tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 179 YFEEITEALVGSN--EEKRREALQSLR---------TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHhc---------cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 3344444444332 355655555442 2445666677766666441 001344455567777777766
Q ss_pred CCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhh
Q 001062 285 CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEML 364 (1167)
Q Consensus 285 ~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l 364 (1167)
-.=.+.||+-++++.++.++..... ... .+.+..|.+|.-|++.++.++..++..-
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l-~~~-----------------------~~~~~h~~LRd~AA~ll~~i~~~f~~~y 303 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQL-CSR-----------------------PPDDNHWALRDYAARLLAQICRKFSTSY 303 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhh-cCC-----------------------CCCchHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4445679999999999887752111 000 0023479999999999999998876433
Q ss_pred HHHHHHHhhHHHhhhccC
Q 001062 365 SKLYEEACPKLIDRFKER 382 (1167)
Q Consensus 365 ~~~~~~i~p~L~~~l~d~ 382 (1167)
..+...+.-.+.+.+.|+
T Consensus 304 ~~l~~ri~~tl~k~l~d~ 321 (343)
T cd08050 304 NTLQPRITRTLLKALLDP 321 (343)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 334444555555555444
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.66 E-value=2.6 Score=51.95 Aligned_cols=165 Identities=14% Similarity=0.079 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhh-hHHHHHHhccc-CCCCchHHHHHHHHHHHHhccCCC
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGS-LIPGIEKSLND-KSSTSNLKIEALTFTRLVLSSHSP 502 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~-l~~~l~~~l~d-~~~~~~~~~~al~~l~~l~~~~~~ 502 (1167)
-.|++.+.|+|+++..+.|.....+-..+...-+.+-.+-+.+ .-....+.|.+ .+.+.+-|.-+.-.|..++.++.-
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 4577888888988877777665544344433222221111110 00011122222 222223444444567777765431
Q ss_pred CchhhhhHhhHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHH
Q 001062 503 PVFHPYIKALSSPVLAAVGER-YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECA 581 (1167)
Q Consensus 503 ~~~~~~l~~ll~~l~~~l~d~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~A 581 (1167)
..-.-.-..++...+.-++|. .+-.++..+-++|.+.+.....+ .++.. ....+.++. .+. |.-+|||.+|
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Ar-w~G~r-~~AhekL~~----~Ls--D~vpEVRaAA 662 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEAR-WSGRR-DNAHEKLIL----LLS--DPVPEVRAAA 662 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhh-hcccc-ccHHHHHHH----Hhc--CccHHHHHHH
Confidence 111112244566666667774 68889999999999987643211 00000 112334444 333 5678999999
Q ss_pred HHHHHHHHHhcCcccc
Q 001062 582 ISCMGLVISTFGDNLG 597 (1167)
Q Consensus 582 i~alg~l~~~~g~~l~ 597 (1167)
+.|+|.++....+.+.
T Consensus 663 VFALgtfl~~~~d~fd 678 (1387)
T KOG1517|consen 663 VFALGTFLSNGSDNFD 678 (1387)
T ss_pred HHHHHHHhcccccccc
Confidence 9999999987655443
No 213
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=93.56 E-value=14 Score=43.02 Aligned_cols=235 Identities=14% Similarity=0.166 Sum_probs=120.4
Q ss_pred CcchHHHHHHHHHHHHHHhcCCh-hhHH-HHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchH
Q 001062 340 DASWKVRRAAAKCLAALIVSRPE-MLSK-LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1167)
Q Consensus 340 d~sw~vR~aA~~~l~~li~~~~~-~l~~-~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~ 417 (1167)
|.+|.=-.-.=..+-.++.+.+. .... +-...+-.|+..+...++.-|..+...+..+.....+.+.--+.. -.
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~----i~ 176 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS----IN 176 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH----HH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH----HH
Confidence 57898766666777777776542 1111 122344556677776667777665555555443322110000000 00
Q ss_pred HHH---------HHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH--hcCchhHhhhhhhHHHHHHhccc-C------
Q 001062 418 WLL---------KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVV--VLPDCLADHIGSLIPGIEKSLND-K------ 479 (1167)
Q Consensus 418 ~~l---------~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~--~~~~~l~~~l~~l~~~l~~~l~d-~------ 479 (1167)
..+ ..-+.+++..+...+++-..+.+..-..++....- ..+..+..|.+++...+...+.. +
T Consensus 177 ~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~ 256 (409)
T PF01603_consen 177 NIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV 256 (409)
T ss_dssp HHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH
T ss_pred HHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 000 01123344444444443333333333333322211 11233444444444444433331 1
Q ss_pred ---------CCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHH--HHhccCCccc
Q 001062 480 ---------SSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGEL--VRVLRPSVEG 548 (1167)
Q Consensus 480 ---------~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l--~~~~~~~~~~ 548 (1167)
.+++.-..--+..+..+++...++.+......+...+..|++..++.|+..|+..+.+= +..+
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li------ 330 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI------ 330 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH------
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH------
Confidence 11111122334557777887777888889999999999999999999999999887542 3322
Q ss_pred cCCCCccchHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHHH
Q 001062 549 LGFDFKPYVQPIYNAIMSRLTN---QDQDQEVKECAISCMGLVI 589 (1167)
Q Consensus 549 ~~~~~~~~l~~l~~~ll~~l~~---~d~~~~vr~~Ai~alg~l~ 589 (1167)
..+-+.++|.++..+.+ ++=+..||..|..++..+.
T Consensus 331 -----~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~ 369 (409)
T PF01603_consen 331 -----SQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILM 369 (409)
T ss_dssp -----HCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHH
T ss_pred -----HhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 23445666666666543 2336689999988888775
No 214
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=93.52 E-value=9.2 Score=47.09 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=67.7
Q ss_pred HHHHHHHhhhhcC----ChHHHHHHHHHHHHHHHhh-cC------HHHHHHHHHHHHHHhhcC--CCChHHHHHHHHHHH
Q 001062 169 ERLLSALLPQLSA----NQASVRKKSVSCIASLASS-LS------DDLLAKATIEVVRNLRSK--GAKPEMIRTNIQMVG 235 (1167)
Q Consensus 169 ~~l~~~ll~~l~~----~~~~vrk~a~~~l~~l~~~-~~------~~~~~~l~~~l~~~l~~~--~~~~~~r~~~~~~l~ 235 (1167)
+.+++.++..+.+ +++.+|..|+.+++.++.. +. ......+++.+...+.+. ..+.+.+..++.++|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 3445555555543 3458999999999999862 21 223455666666555331 112345667888888
Q ss_pred HHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccc
Q 001062 236 ALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS 291 (1167)
Q Consensus 236 ~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~ 291 (1167)
.+.. +..++.+..++..+.+....+|-.|+++|..++..+|...++
T Consensus 472 N~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~ 517 (574)
T smart00638 472 NAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQE 517 (574)
T ss_pred ccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHH
Confidence 7654 223333333333111145679999999999999888865543
No 215
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=93.26 E-value=16 Score=41.74 Aligned_cols=36 Identities=6% Similarity=0.151 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 001062 120 LAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1167)
Q Consensus 120 ~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~ 157 (1167)
++..+++.++-.+..+.... +..+...++.+++.++
T Consensus 231 IgElLlkrLilqf~r~f~Rn--Dk~~c~~~~kfiahLi 266 (739)
T KOG2140|consen 231 IGELLLKRLILQFKRSFRRN--DKVSCLNASKFIAHLI 266 (739)
T ss_pred HHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHH
Confidence 66666777776666666543 2444555555555444
No 216
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.19 E-value=3.8 Score=46.59 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=125.2
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhhhhcCc------ccchH-HHHHHhhcc---cchhHHHHHHHHHHHhhccccchhhh
Q 001062 855 NVIIESFQSPFEEIKSAASYALGNIAVGNL------SKFLP-FILDQIDNQ---QKKQYLLLHSLKEVIVRQSVDKAEFQ 924 (1167)
Q Consensus 855 ~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~------~~~lp-~l~~~l~~~---~~~~~~~l~aLkei~~~~~~~~~~~l 924 (1167)
+.+...+-+++.+||.+++..+=-+....- +..++ .+...+..+ ..+|..++.=+|.++...+..
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~----- 102 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP----- 102 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc-----
Confidence 334434445559999999887755443210 00122 222333332 235667777777777653221
Q ss_pred hHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCcc-----cchHHHHHhhcCCChhhHHHHHHHHHHHhccCCh--
Q 001062 925 DSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPA-----KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPE-- 997 (1167)
Q Consensus 925 ~~~~~~i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~~~-----~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~-- 997 (1167)
..+-..+...+....++++|..|+++.++|..++..+|+ .-+..+.+.+.+++...-..++.++=|.+++...
T Consensus 103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 111234445555555667889999999999999999985 2335555555544444666777888888876532
Q ss_pred --hhhhhhhHhHHHHHhh----ccCCCh-HHHHHHHHHHHHHHhcCchhhhchhh--hhhHHHHHhhhccccceeeeecc
Q 001062 998 --KIDEIIFPEISSFLML----IKDQDR-HVRRAAVLALSTFAHNKPNLIKGLLP--ELLPLLYDQTIVKKELIRTVDLG 1068 (1167)
Q Consensus 998 --~~~~~l~~~i~~~l~~----l~d~d~-~vr~~a~~~L~~~a~~~p~~~~~~l~--~llp~L~~~~~~~~~lir~v~~g 1068 (1167)
..+-.+..++.+|... ..+... +--+.+..++.++.++-|.++.=-.+ .-+..|..-+..+
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p---------- 252 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLP---------- 252 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCC----------
Confidence 0112244445555543 222221 34456677777887887776521111 3444455544432
Q ss_pred CceeecccChhHHHHHHHHHHHHHhh
Q 001062 1069 PFKHTVDDGLELRKAAFECVDTLLDS 1094 (1167)
Q Consensus 1069 p~k~~~d~gle~Rk~a~~~~~~ll~~ 1094 (1167)
+.++|+..++.+|.+++.
T Consensus 253 --------~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 253 --------NPEIRKAILDLLFDLLRI 270 (371)
T ss_pred --------CHHHHHHHHHHHHHHHCC
Confidence 336999999999999985
No 217
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.11 E-value=1.7 Score=45.62 Aligned_cols=182 Identities=19% Similarity=0.180 Sum_probs=110.4
Q ss_pred HHHhhhhcChhhHHHHHHHHHHHhcCC-CcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccC----CChh
Q 001062 70 LAPLVKKVSEPRVVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD----MNTE 144 (1167)
Q Consensus 70 l~~l~~~~~~~~~~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~----~~~~ 144 (1167)
+.++++++-.+.+.-++++.++.+.++ +.+.|+.|...|+. .+-++.++|.++..++++- .+-.
T Consensus 183 ~KplvkHvLsKELq~YF~kvisal~dEs~~~~r~aAl~sLr~-----------dsGlhQLvPYFi~f~~eqit~Nl~nl~ 251 (450)
T COG5095 183 LKPLVKHVLSKELQMYFDKVISALLDESDEQTRDAALESLRN-----------DSGLHQLVPYFIHFFNEQITKNLKNLE 251 (450)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------CccHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 346666666666667788888777654 44678888887773 1234566777666665421 0122
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcC------C----hHHHHHHHHHHHHHHHhhcCHHH---HHHHHH
Q 001062 145 IRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA------N----QASVRKKSVSCIASLASSLSDDL---LAKATI 211 (1167)
Q Consensus 145 v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~------~----~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~ 211 (1167)
+-...+.....++++-.-.+.||...++|.++.++-. + ...+|.-|+..++.+...++..+ -..+..
T Consensus 252 ~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtr 331 (450)
T COG5095 252 KLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTR 331 (450)
T ss_pred HHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHH
Confidence 2333444555555555555669999999988877532 1 12799999999999988887764 133444
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh-hhhcchhhhHHHHHHHhhh
Q 001062 212 EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY-RFGPHLGDTVPVLIDYCTS 262 (1167)
Q Consensus 212 ~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~p~l~~lvp~l~~~l~~ 262 (1167)
.+++.+-+.+......-+++..+..+.+..-. .++|.++.-.-.+...+..
T Consensus 332 TllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~ 383 (450)
T COG5095 332 TLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEK 383 (450)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhc
Confidence 44444433322233455667777776655433 3566666666666666655
No 218
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=93.07 E-value=2 Score=50.35 Aligned_cols=145 Identities=15% Similarity=0.121 Sum_probs=99.9
Q ss_pred HHHhcCCChhHHhHhHHHHHHHhcc-cccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh---H-HH
Q 001062 10 LEKITGKDKDFRYMATSDLLNELNK-ESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR---V-VE 84 (1167)
Q Consensus 10 l~~~~~~d~d~R~mAl~dL~~~l~~-~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~---~-~~ 84 (1167)
..+..-.|.|+|.+|+-++...=.. .....+ .....+.+.+++.|.||...|+..+...|..++-.+++.. + ..
T Consensus 383 ~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~n 461 (678)
T KOG1293|consen 383 MCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNN 461 (678)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHcC-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcC
Confidence 3344557899999999998753321 111112 3446788888999999999999999999999997766543 2 24
Q ss_pred HHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHH-HHHHhhhccCCChhHHHHHHHHHHHHHH
Q 001062 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTP-QLTKGITLKDMNTEIRCECLDILCDVLH 158 (1167)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p-~Ll~~l~~~~~~~~v~~~~~~~L~~l~~ 158 (1167)
.+++|...+.+.....|..+.-+|+.++=+.... .......++-- .+....+++ +|.|++.++.+|..+.-
T Consensus 462 gId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~-~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 462 GIDILESMLTDPDFNSRANSLWVLRHLMFNCDEE-EKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHH-HHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhc
Confidence 5888888888888888988999999877555543 21222233322 333444554 69999999998876653
No 219
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=92.87 E-value=25 Score=41.72 Aligned_cols=266 Identities=13% Similarity=0.174 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCc--hHHHHHHHHHHHHhc
Q 001062 422 QEVSKIVKSINRQLREK-SIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTS--NLKIEALTFTRLVLS 498 (1167)
Q Consensus 422 ~~~~~l~~~l~~~L~~~-~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~--~~~~~al~~l~~l~~ 498 (1167)
..++.|.......+..+ ....|++++.++.+++....... ...-....+.+.+..... ..+.+++..|+ +
T Consensus 24 ~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~----~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT---~ 96 (464)
T PF11864_consen 24 SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS----GLMRAEFFRDISDPSNDDDFDLRLEALIALT---D 96 (464)
T ss_pred hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc----HHHHHHHHHHHhcCCCchhHHHHHHHHHHHH---c
Confidence 45566777666666554 34689999999999987654311 111112222233332112 35555555444 2
Q ss_pred cCCCCchhhhhHhhHHHHHHHhcCC---------------------------chHHHHHHHHHHHHHHHhccCCccccCC
Q 001062 499 SHSPPVFHPYIKALSSPVLAAVGER---------------------------YYKVTAEALRVCGELVRVLRPSVEGLGF 551 (1167)
Q Consensus 499 ~~~~~~~~~~l~~ll~~l~~~l~d~---------------------------~~~v~~~al~~l~~l~~~~~~~~~~~~~ 551 (1167)
+| ..+..+...+.|.+..-+..- .......-+..+.++++.=..
T Consensus 97 -~G-rdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~------- 167 (464)
T PF11864_consen 97 -NG-RDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFN------- 167 (464)
T ss_pred -CC-cCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCC-------
Confidence 22 233333333444433333211 112233444444455443111
Q ss_pred CC-ccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhcC
Q 001062 552 DF-KPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAAS 630 (1167)
Q Consensus 552 ~~-~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~ 630 (1167)
.+ ...+..++..++..+.++... +.-..++..+..++.. |..=...+..++.+|+...+.......+-+++.+++.+
T Consensus 168 ~l~e~~i~~lv~~i~~iC~~Ts~~-~di~~~L~vldaii~y-~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S 245 (464)
T PF11864_consen 168 YLDEDEISSLVDQICTICKSTSSE-DDIEACLSVLDAIITY-GDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKS 245 (464)
T ss_pred CCCHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHc-CcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcC
Confidence 11 246777788777777655443 3446788888888753 44334588899999988766666667788899999865
Q ss_pred CCCCchhhHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHhCCC-CChhhHHH--HHHHHhhhcCCCchhhH
Q 001062 631 PLHIDLTCVLEHVIAELTAFLR------KANRALRQATLGTMNSLVVAYGDK-IGASAYEV--IIVELSTLISDSDLHMT 701 (1167)
Q Consensus 631 ~~~~~~~~~~~~~l~~L~~~L~------~~~~~lr~~al~~L~~l~~~~~~~-~~~~~~~~--~l~~l~~~l~~~d~~~~ 701 (1167)
..+ ...+..|..+|+ ..+..+-..|+..+..++-..+.. ++.-.+.. +++.+...+..++..+.
T Consensus 246 ~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~ 318 (464)
T PF11864_consen 246 HLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVD 318 (464)
T ss_pred ccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeeh
Confidence 422 456677777773 234445558888888888766432 33222333 77777777765555444
Q ss_pred HHHHHHHHHHh
Q 001062 702 ALALELCCTLM 712 (1167)
Q Consensus 702 ~~al~~l~~l~ 712 (1167)
--.+..+..++
T Consensus 319 ~eIl~~i~~ll 329 (464)
T PF11864_consen 319 YEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHH
Confidence 44455555554
No 220
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=92.86 E-value=0.26 Score=44.37 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=55.2
Q ss_pred hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcc-ccccHHHHHHHHHHhhcc
Q 001062 242 GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD-ISSYCDEILHLTLEYLSY 306 (1167)
Q Consensus 242 ~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~-~~~~l~~ii~~~~~~l~~ 306 (1167)
|..+.||++.++.++...+++ -.+++|..++.++..+++++|.+ +..+..++++-...++..
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTH---i~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTH---ISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHh---CCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 356899999999999999999 88999999999999999999998 778888888887777753
No 221
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=5 Score=51.98 Aligned_cols=97 Identities=20% Similarity=0.175 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcC
Q 001062 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSAS 264 (1167)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~ 264 (1167)
.|-+..+.|++..+...+++ |.++...++...++.. ...|-.++.....+....|+...+++|+++|++-..+.+
T Consensus 1519 ~v~~~li~~i~~~~~a~~~d-~~pl~~k~l~~trss~--~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED-- 1593 (1621)
T KOG1837|consen 1519 IVSKLLIAEIASDSVADKDD-LKPLNQKILKKTRSSS--RKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMED-- 1593 (1621)
T ss_pred HHHHHHHHHHHhhccCChhh-hHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhh--
Confidence 57788889999999888877 7777777777766653 256777888999999999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHhCCc
Q 001062 265 ENDEELREYSLQALESFLLRCPR 287 (1167)
Q Consensus 265 e~~~e~re~al~~l~~l~~~~~~ 287 (1167)
+++++...|-.....+=+..|+
T Consensus 1594 -~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1594 -EDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred -hHHHHHHHHHHHHHHHHHHhch
Confidence 7888876666655555555554
No 222
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.78 E-value=27 Score=41.80 Aligned_cols=56 Identities=29% Similarity=0.347 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHH
Q 001062 343 WKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELV 398 (1167)
Q Consensus 343 w~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~ 398 (1167)
-+||.-.++.+..+.....+.=+.+|..+...+..|+.||+++||.+++-++..+=
T Consensus 99 k~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ 154 (892)
T KOG2025|consen 99 KKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ 154 (892)
T ss_pred hhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh
Confidence 38999999888877775443334688899999999999999999999988887663
No 223
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=92.66 E-value=12 Score=42.57 Aligned_cols=236 Identities=13% Similarity=0.071 Sum_probs=132.0
Q ss_pred hhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCC
Q 001062 18 KDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG 96 (1167)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~-d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~ 96 (1167)
||.|....+-|...-. ...-.++++.+...+. +.|+.+...+.++|+.-..++..+.-..+++.+..++.++
T Consensus 1 ad~r~~~~~~L~~l~~-------~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-------SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-------cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 4667776666543222 1266888999998887 5788899999999998887775555678888999999998
Q ss_pred CcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccC--CChhHH----HHHHHHHHHHHH----H-------
Q 001062 97 KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD--MNTEIR----CECLDILCDVLH----K------- 159 (1167)
Q Consensus 97 ~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~--~~~~v~----~~~~~~L~~l~~----~------- 159 (1167)
+..+|.+-..+++.++...+. .........++|.|++.+.... +..... ..++-++. +.. .
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~ 151 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPN-SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNIS 151 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccC-chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhh
Confidence 888999999999988861111 2234455667777766553311 111111 12222222 000 0
Q ss_pred -hccchhHHHH-HHHHHHhhhhcC-ChHHHHHHHHHHHH-HHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001062 160 -FGNLMSNDHE-RLLSALLPQLSA-NQASVRKKSVSCIA-SLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVG 235 (1167)
Q Consensus 160 -~g~~l~~~~~-~l~~~ll~~l~~-~~~~vrk~a~~~l~-~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~ 235 (1167)
..-.+.+.-. -+-+.+...+.+ ++...--+++..+. .+.....++....+-..++-.+.+++...++|+.+++++.
T Consensus 152 ~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~ 231 (339)
T PF12074_consen 152 FWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALK 231 (339)
T ss_pred hhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 0000000000 111233333223 33333333443332 2222222222234444555556666323478999999999
Q ss_pred HHHHHhhhhhhcchhhhHHHHHHHhhh
Q 001062 236 ALSRAVGYRFGPHLGDTVPVLIDYCTS 262 (1167)
Q Consensus 236 ~l~~~~~~~~~p~l~~lvp~l~~~l~~ 262 (1167)
.+....|..++..+-.-+.-.+.....
T Consensus 232 ~l~~~~~~~l~~~li~~l~~~l~~~~~ 258 (339)
T PF12074_consen 232 KLYASNPELLSKSLISGLWKWLSSSET 258 (339)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhccc
Confidence 998888876766554444444444443
No 224
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.45 E-value=17 Score=38.63 Aligned_cols=170 Identities=14% Similarity=0.076 Sum_probs=104.2
Q ss_pred hhHHHhh-hccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHH
Q 001062 372 CPKLIDR-FKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVL 450 (1167)
Q Consensus 372 ~p~L~~~-l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l 450 (1167)
+|.|+.+ -++.++++....++++.++..+. . ...|.+++.+...........+..+...+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~------------------~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl 62 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHK------------------N-VCVPPVLQTLVSLVEQGSLELRYVALRLL 62 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccC------------------c-cchhHHHHHHHHHHcCCchhHHHHHHHHH
Confidence 3444443 36677888888888888887642 0 34577788888777766666666778888
Q ss_pred HHHHHhcCchhHhhhhhhHHH-HHHh---cccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHh-cCCch
Q 001062 451 RELVVVLPDCLADHIGSLIPG-IEKS---LNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAV-GERYY 525 (1167)
Q Consensus 451 ~~l~~~~~~~l~~~l~~l~~~-l~~~---l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l-~d~~~ 525 (1167)
..+...-+..+ +++..++.. ..+. ..+........+.....+..+++..+ + +-..+++.+..++ ++...
T Consensus 63 ~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p-~----~g~~ll~~ls~~L~~~~~~ 136 (234)
T PF12530_consen 63 TLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRP-D----HGVDLLPLLSGCLNQSCDE 136 (234)
T ss_pred HHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhCh-h----hHHHHHHHHHHHHhccccH
Confidence 88877666655 344433322 2221 11222222334444456677776532 2 5678888888999 67778
Q ss_pred HHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHH
Q 001062 526 KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVK 578 (1167)
Q Consensus 526 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr 578 (1167)
.++..++..+..+++.-. . -+.+.+..+...++ .+..+.|-
T Consensus 137 ~~~alale~l~~Lc~~~v----------v-d~~s~w~vl~~~l~-~~~rp~v~ 177 (234)
T PF12530_consen 137 VAQALALEALAPLCEAEV----------V-DFYSAWKVLQKKLS-LDYRPLVL 177 (234)
T ss_pred HHHHHHHHHHHHHHHHhh----------c-cHHHHHHHHHHhcC-CccchHHH
Confidence 889999999999985411 1 23445556666663 34444443
No 225
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.40 E-value=48 Score=43.72 Aligned_cols=253 Identities=16% Similarity=0.164 Sum_probs=136.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhccc-CCCCchHHHHHHHHHHHHhccCCCCch
Q 001062 427 IVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLND-KSSTSNLKIEALTFTRLVLSSHSPPVF 505 (1167)
Q Consensus 427 l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d-~~~~~~~~~~al~~l~~l~~~~~~~~~ 505 (1167)
++..++..|..+...+.-.+..+-..++..++..+.+.+.. .+.++|.. ......++...-.++-.+-...
T Consensus 182 ~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~---f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~----- 253 (1266)
T KOG1525|consen 182 LLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIAN---FLNSCLTEYKSRQSSLKIKYHELILELWRIA----- 253 (1266)
T ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHH---HHHHHHhhccccccchhhHHHHHHHHHHHhh-----
Confidence 44444444444444455555555566666555555333332 22333322 2122334444444444333211
Q ss_pred hhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 001062 506 HPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCM 585 (1167)
Q Consensus 506 ~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~al 585 (1167)
...+-.++|.+..-+....-.+|-.|...+|.++..-.. .+..-.++++...+.++. |.+.+||-.++.+.
T Consensus 254 p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~-------~l~~~~~~~~~~fl~r~~--D~~~~vR~~~v~~~ 324 (1266)
T KOG1525|consen 254 PQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDS-------QLSETYDDLWSAFLGRFN--DISVEVRMECVESI 324 (1266)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchh-------hhcccchHHHHHHHHHhc--cCChhhhhhHHHHh
Confidence 123445566666666666678899999999999754222 122345678888888885 77889999999999
Q ss_pred HHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001062 586 GLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGT 665 (1167)
Q Consensus 586 g~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~ 665 (1167)
.+++.+..... .-..++-.+..+.-++..|....-++..+...... -.+.+.++..+..-++..-+.+|..|+.-
T Consensus 325 ~~~l~~~~~~~--~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~---l~~~~~ll~~~~eR~rDKk~~VR~~Am~~ 399 (1266)
T KOG1525|consen 325 KQCLLNNPSIA--KASTILLALRERDLDEDVRVRTQVVIVACDVMKFK---LVYIPLLLKLVAERLRDKKIKVRKQAMNG 399 (1266)
T ss_pred HHHHhcCchhh--hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhh---hhhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 98876622211 11122222333444444443322222111110000 12334466666777788888999999999
Q ss_pred HHHHHHHh------CCCCChhhHHHHHHHHhhhcCCCchhhH
Q 001062 666 MNSLVVAY------GDKIGASAYEVIIVELSTLISDSDLHMT 701 (1167)
Q Consensus 666 L~~l~~~~------~~~~~~~~~~~~l~~l~~~l~~~d~~~~ 701 (1167)
|..+.+++ ++......+..+-..++.++...|...+
T Consensus 400 LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 400 LAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 99999862 1112222344455566666655544444
No 226
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.85 E-value=4.1 Score=42.90 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhc---CCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHH
Q 001062 224 PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA---SENDEELREYSLQALESFLLRCPRDISSYCDEILHLT 300 (1167)
Q Consensus 224 ~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~---~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~ 300 (1167)
.+.|..++.++ +-.+-+.+++|++++++... +=.+-++-...+....++..+-.--+.||+.++++-+
T Consensus 212 ~~~r~aAl~sL---------r~dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSi 282 (450)
T COG5095 212 EQTRDAALESL---------RNDSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSI 282 (450)
T ss_pred HHHHHHHHHHh---------ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHH
Confidence 45666666554 22445677888888777541 0012233333444444454443223559999998877
Q ss_pred HHhhc-----cCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHH
Q 001062 301 LEYLS-----YDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKL 375 (1167)
Q Consensus 301 ~~~l~-----~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L 375 (1167)
+..+- .+|+ |...+.+|.-|+.+++-+...+|.....+-..+...+
T Consensus 283 lTcliakklg~~p~-----------------------------dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTl 333 (450)
T COG5095 283 LTCLIAKKLGNVPD-----------------------------DHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTL 333 (450)
T ss_pred HHHHHHHHhcCCCc-----------------------------chhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHH
Confidence 66542 1221 1224689999999999988888754333333444456
Q ss_pred Hhhhcc--CChhHHHHHHHHHHHH
Q 001062 376 IDRFKE--REENVKMDVFNTFIEL 397 (1167)
Q Consensus 376 ~~~l~d--~~~~vr~~~~~~l~~l 397 (1167)
+++|-| +-+.....++.++..+
T Consensus 334 lKafLD~~k~~sT~YGalkgls~l 357 (450)
T COG5095 334 LKAFLDREKTESTQYGALKGLSIL 357 (450)
T ss_pred HHHHHhcccccchhhhhhhhhhhh
Confidence 666634 3455555565555443
No 227
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=91.15 E-value=0.78 Score=44.77 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCC---c-----------hhHHHHHH
Q 001062 61 DVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTT---S-----------SLAQSIHT 126 (1167)
Q Consensus 61 ~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~---~-----------~~~~~~~~ 126 (1167)
-|++..+.++..++.+--++.|+.+++.+.+.+.++ +.........|+.+.+++.. . +.......
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 478899999999998887788999999999988763 45566777788888777642 1 11222344
Q ss_pred HHHHHHHHhhhccCCC--hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHH
Q 001062 127 SLTPQLTKGITLKDMN--TEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCI 194 (1167)
Q Consensus 127 ~i~p~Ll~~l~~~~~~--~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l 194 (1167)
.++..+.+.++..... .++...+++++...+.......-.. ..+++.++..+.++ .++..|+.||
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 4555555555543211 5677788888888777433322111 23777777777554 3478888775
No 228
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.06 E-value=2.3 Score=37.38 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=62.1
Q ss_pred HHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 001062 133 TKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIE 212 (1167)
Q Consensus 133 l~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~ 212 (1167)
+.-++++ .+-+|..++..|..+++.-. .-....+.++..++..++++++-|=-+|+++++.++...++..+..++..
T Consensus 9 l~~L~dp--~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 9 LSDLNDP--LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDE 85 (92)
T ss_pred HHHccCC--CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 3344444 46799999999999998876 22256789999999999999999999999999999999988766655544
Q ss_pred H
Q 001062 213 V 213 (1167)
Q Consensus 213 l 213 (1167)
.
T Consensus 86 y 86 (92)
T PF10363_consen 86 Y 86 (92)
T ss_pred H
Confidence 3
No 229
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.88 E-value=51 Score=41.04 Aligned_cols=125 Identities=23% Similarity=0.273 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhh----------hhcchhhhHHHHHHHhhhc-CCCChhHHHHHHHHHHHHHHhCCcccccc
Q 001062 224 PEMIRTNIQMVGALSRAVGYR----------FGPHLGDTVPVLIDYCTSA-SENDEELREYSLQALESFLLRCPRDISSY 292 (1167)
Q Consensus 224 ~~~r~~~~~~l~~l~~~~~~~----------~~p~l~~lvp~l~~~l~~~-~e~~~e~re~al~~l~~l~~~~~~~~~~~ 292 (1167)
...+.+++.+++++++..-.. ...-...+++.+...+... +..+.+.+-.++.+|+++=
T Consensus 449 ~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g---------- 518 (618)
T PF01347_consen 449 PYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG---------- 518 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----------
T ss_pred hhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC----------
Confidence 467889999999999863222 3344455666666665521 1155677788999998773
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHh
Q 001062 293 CDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEAC 372 (1167)
Q Consensus 293 l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~ 372 (1167)
++.+++.+.+++..+ .+.+-.+|.+|+.++..+....|+.. .+.++
T Consensus 519 ~~~~i~~l~~~i~~~-------------------------------~~~~~~~R~~Ai~Alr~~~~~~~~~v---~~~l~ 564 (618)
T PF01347_consen 519 HPESIPVLLPYIEGK-------------------------------EEVPHFIRVAAIQALRRLAKHCPEKV---REILL 564 (618)
T ss_dssp -GGGHHHHHTTSTTS-------------------------------S-S-HHHHHHHHHTTTTGGGT-HHHH---HHHHH
T ss_pred CchhhHHHHhHhhhc-------------------------------cccchHHHHHHHHHHHHHhhcCcHHH---HHHHH
Confidence 235566666665411 02334899999999998877666432 23333
Q ss_pred hHHHhhhccCChhHHHHHHHHH
Q 001062 373 PKLIDRFKEREENVKMDVFNTF 394 (1167)
Q Consensus 373 p~L~~~l~d~~~~vr~~~~~~l 394 (1167)
|.+.+. ....+||.+|+..+
T Consensus 565 ~I~~n~--~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 565 PIFMNT--TEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHH-T--TS-HHHHHHHHHHH
T ss_pred HHhcCC--CCChhHHHHHHHHH
Confidence 333221 22356887776544
No 230
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.71 E-value=38 Score=43.89 Aligned_cols=224 Identities=15% Similarity=0.112 Sum_probs=126.7
Q ss_pred cCCCChhHHHHHHHHHHHhhhhcChhh---HHHHHHHHHHHhcCCCc---chhcHHHHHHHHHHhhcCCchhHHHHHHHH
Q 001062 55 LDDVAGDVSGLAVKCLAPLVKKVSEPR---VVEMTDKLCIKLLNGKD---QHRDIASIALKTIIAEVTTSSLAQSIHTSL 128 (1167)
Q Consensus 55 L~d~~~~Vr~~A~~~l~~l~~~~~~~~---~~~l~~~L~~~~~~~~~---~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i 128 (1167)
-..+..+||....+|+-.+.+..++.. |..+++.|-.....+.+ ..-..+-.+|+-++.++=+. +-......+
T Consensus 851 ~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqS-Lp~sci~~l 929 (1610)
T KOG1848|consen 851 NSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQS-LPTSCILDL 929 (1610)
T ss_pred hcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhc-CChHHHHHH
Confidence 347888999999999999988776532 55555444433222222 22334556677776654321 222334445
Q ss_pred HHHHHHhhhccCCChhHHHHHH---HHHHHHHHH----hccch--------------------hHHHHHHHHHHhhhhcC
Q 001062 129 TPQLTKGITLKDMNTEIRCECL---DILCDVLHK----FGNLM--------------------SNDHERLLSALLPQLSA 181 (1167)
Q Consensus 129 ~p~Ll~~l~~~~~~~~v~~~~~---~~L~~l~~~----~g~~l--------------------~~~~~~l~~~ll~~l~~ 181 (1167)
+..+...-.+ +++-++...|+ -.++|.+++ .|..- ...|--++..+.+...+
T Consensus 930 idtl~~fs~Q-ktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 930 IDTLLVFSRQ-KTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHhh-hccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 5555443332 23455555544 456777665 11110 12234455666666778
Q ss_pred ChHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHhhc-------CCCCh-----HHHHHHHHHHHHHHHHhhhhh
Q 001062 182 NQASVRKKSVSCIASLAS----SLSDDLLAKATIEVVRNLRS-------KGAKP-----EMIRTNIQMVGALSRAVGYRF 245 (1167)
Q Consensus 182 ~~~~vrk~a~~~l~~l~~----~~~~~~~~~l~~~l~~~l~~-------~~~~~-----~~r~~~~~~l~~l~~~~~~~~ 245 (1167)
+++.||+.|++.+=.+.. .++...|+.+.-.++..+-+ ..|+. .--++.+.+++.|++..+..|
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888999999998766653 34555555544444333322 12211 123467888888888765543
Q ss_pred h---------cchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 001062 246 G---------PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1167)
Q Consensus 246 ~---------p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~ 283 (1167)
. .-+..++.++.....+ ..+|+.-+++.+++.++.
T Consensus 1089 k~llnln~f~~vwe~ll~flkrl~s~---~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSD---ISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhc---CChHhHHHHHHHHHHHHH
Confidence 3 2234455555555555 778888888888776653
No 231
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=13 Score=48.63 Aligned_cols=104 Identities=12% Similarity=0.151 Sum_probs=74.3
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---HH-hhcCCCChHHHHHHHHHHHHHHHHhhhhhhc
Q 001062 172 LSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVV---RN-LRSKGAKPEMIRTNIQMVGALSRAVGYRFGP 247 (1167)
Q Consensus 172 ~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~---~~-l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p 247 (1167)
+..+++.+.--++..|.+|.+.++.+......+....+++... .. +.+. +..+|....+.+..+...+.++++|
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~--~~~VR~~t~~v~s~l~t~lkk~lsp 120 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE--DRTVRLLTHDVFSKLLTKLKKKLSP 120 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445555556678999999999999988766554333443332 22 2333 3578999999999999999999999
Q ss_pred chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 001062 248 HLGDTVPVLIDYCTSASENDEELREYSLQALES 280 (1167)
Q Consensus 248 ~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~ 280 (1167)
|+..+||..+-..-+ .+..+.++|...+..
T Consensus 121 ~LK~li~~wl~~~~d---~~~~vs~aa~~sf~~ 150 (1312)
T KOG0803|consen 121 FLKSLIPPWLGGQFD---LDYPVSEAAKASFKD 150 (1312)
T ss_pred HHHhhhhhhhheecc---cchHHHHHHHHHHHh
Confidence 999999999876555 556666666655543
No 232
>PF05536 Neurochondrin: Neurochondrin
Probab=90.41 E-value=49 Score=40.04 Aligned_cols=212 Identities=15% Similarity=0.152 Sum_probs=121.1
Q ss_pred HHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHHHhhhcc----C--CChhHHHHHHHHHHHHHH
Q 001062 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSL-AQSIHTSLTPQLTKGITLK----D--MNTEIRCECLDILCDVLH 158 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~-~~~~~~~i~p~Ll~~l~~~----~--~~~~v~~~~~~~L~~l~~ 158 (1167)
+++....+..+++..|=++...+.+++.+-+.... .+.+.+.|=+++++.|-.. + +....+.-++.+|..++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 34444444444433344444444555554332211 1234444444444333221 1 123456667777777765
Q ss_pred Hhccchh--HHHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHH-HHH--HHHHHHHHHhhcCCCChHHHHHHHH
Q 001062 159 KFGNLMS--NDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDD-LLA--KATIEVVRNLRSKGAKPEMIRTNIQ 232 (1167)
Q Consensus 159 ~~g~~l~--~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~-~~~--~l~~~l~~~l~~~~~~~~~r~~~~~ 232 (1167)
.+.+. +..-..+|.++..+.+... .+-.-+.+||..++.+-... .+- ..++.+.+.+.+.. ...+.++.
T Consensus 87 --~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~---~~~E~Al~ 161 (543)
T PF05536_consen 87 --DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS---FQMEIALN 161 (543)
T ss_pred --ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc---chHHHHHH
Confidence 33332 6667778889998877666 88999999999999543332 221 24566666665532 46788999
Q ss_pred HHHHHHHHhhhhh----hcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcc--c----cccHHHHHHHHHH
Q 001062 233 MVGALSRAVGYRF----GPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD--I----SSYCDEILHLTLE 302 (1167)
Q Consensus 233 ~l~~l~~~~~~~~----~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~--~----~~~l~~ii~~~~~ 302 (1167)
++..++...+... ...+..+++.+-..+.. ..++.+-..+..+..|...+|.. - ..+...+..-+..
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~---~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~ 238 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSS---FHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD 238 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHh---hccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence 9988887655322 23345566666555555 45566777888888888887521 1 1345555555555
Q ss_pred hhc
Q 001062 303 YLS 305 (1167)
Q Consensus 303 ~l~ 305 (1167)
.++
T Consensus 239 iL~ 241 (543)
T PF05536_consen 239 ILQ 241 (543)
T ss_pred HHh
Confidence 554
No 233
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=89.89 E-value=38 Score=37.98 Aligned_cols=110 Identities=17% Similarity=0.194 Sum_probs=77.1
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHHHhcCch----hHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC-CCc
Q 001062 430 SINRQLREKSIKTKVGAFSVLRELVVVLPDC----LADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS-PPV 504 (1167)
Q Consensus 430 ~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~----l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~-~~~ 504 (1167)
.+++....++-.+-..++.+|.++...++.- +..+++.++....+.|...+ --.|-.++.+|+.++..-. ...
T Consensus 168 ~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N--YvtkrqslkLL~ellldr~n~~v 245 (335)
T PF08569_consen 168 KFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN--YVTKRQSLKLLGELLLDRSNFNV 245 (335)
T ss_dssp GHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS--HHHHHHHHHHHHHHHHSGGGHHH
T ss_pred HHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC--eEeehhhHHHHHHHHHchhHHHH
Confidence 3555555666677778888888887766443 45567788888888887553 3467889999999986421 122
Q ss_pred hhhhh--HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 001062 505 FHPYI--KALSSPVLAAVGERYYKVTAEALRVCGELVRV 541 (1167)
Q Consensus 505 ~~~~l--~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~ 541 (1167)
+..|+ +.-+..++..++|++..++.+|+.++--++..
T Consensus 246 m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 246 MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 34566 45788888999999999999999999988764
No 234
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=89.88 E-value=22 Score=43.38 Aligned_cols=136 Identities=14% Similarity=0.173 Sum_probs=67.1
Q ss_pred ccchhHHHHHHHHHHhhhhc-CChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCC------------ChHHH
Q 001062 161 GNLMSNDHERLLSALLPQLS-ANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGA------------KPEMI 227 (1167)
Q Consensus 161 g~~l~~~~~~l~~~ll~~l~-~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~------------~~~~r 227 (1167)
-..+...+..++..++...= .-++.+++.-..-++.++..- ..++..++..+++.+..+.. .....
T Consensus 64 Vs~Ld~~~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~-~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~ 142 (563)
T PF05327_consen 64 VSLLDSSCKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQ-PKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIY 142 (563)
T ss_dssp GGGG-SCCHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHGGGS-HHHHHH-------------
T ss_pred HHHhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhH
Confidence 33344447788888876632 233477777777777777655 33677777777777654321 01222
Q ss_pred HHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHH
Q 001062 228 RTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLE 302 (1167)
Q Consensus 228 ~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~ 302 (1167)
.....++..|++..|... ..++|.+.+.+-... .....-...+.-+-.+..++|.--...+.-+++-+++
T Consensus 143 ~~vH~~L~~Il~lvP~s~----~~L~~~l~~~FP~~~-~~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi~rLi~ 212 (563)
T PF05327_consen 143 ERVHDALQKILRLVPTSP----SFLIPILVQNFPHKR-KSKDEHVNYVRNLLRLTEYCPELRSDILSLIIERLIK 212 (563)
T ss_dssp --HHHHHHHHHHH-GGGH----HHHHHHHHHTS--TT-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCH----HHHHHHHHHcCcCCC-CChHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHH
Confidence 345677888887766432 233444443332211 1222223344455556777765444555555554443
No 235
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.31 E-value=0.68 Score=42.40 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=43.4
Q ss_pred CCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhh
Q 001062 15 GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK 75 (1167)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~ 75 (1167)
+.|+..-.-|++||...+........--..-.....+++++++++++||..|..|+..++.
T Consensus 55 s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 55 SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4478888899999998887521110001123346789999999999999999999998763
No 236
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.10 E-value=22 Score=39.69 Aligned_cols=119 Identities=20% Similarity=0.153 Sum_probs=71.7
Q ss_pred ChhHHHHHHHHHHHHHHHhccchh---HH----HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHH---HHHH
Q 001062 142 NTEIRCECLDILCDVLHKFGNLMS---ND----HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLA---KATI 211 (1167)
Q Consensus 142 ~~~v~~~~~~~L~~l~~~~g~~l~---~~----~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~---~l~~ 211 (1167)
+.++....+..+.+++..-+.... .. .+.....++..+.++++.++..|+..++.+....+..... ..++
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~ 149 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALP 149 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHH
Confidence 467778888888888776543211 11 1225667777888888999999999999999887765433 6777
Q ss_pred HHHHHhhcCCC--ChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHh
Q 001062 212 EVVRNLRSKGA--KPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYC 260 (1167)
Q Consensus 212 ~l~~~l~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l 260 (1167)
.+++.+++... +.+.+..++++++.+++.-..+-.=+=...++.+.+.+
T Consensus 150 ~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 150 KLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp HHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHH
Confidence 77777765321 12345788999999998654331111155566666655
No 237
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.63 E-value=49 Score=43.71 Aligned_cols=196 Identities=13% Similarity=0.145 Sum_probs=119.4
Q ss_pred HhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH
Q 001062 376 IDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVV 455 (1167)
Q Consensus 376 ~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~ 455 (1167)
++++..|++..|..+++.+.++++.... ..+...+|.......+...+.+..+|....+++..+..
T Consensus 47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~--------------e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t 112 (1312)
T KOG0803|consen 47 VKKLLKRDETTKIKALQELSELIDTSDT--------------EELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLT 112 (1312)
T ss_pred HHHHhccChHHHHHHHHhHHHhcccccc--------------hHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 4556568889999999999998875431 12223345555555666778888999999999999999
Q ss_pred hcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhh-----HhhHHHHHHH-----------
Q 001062 456 VLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYI-----KALSSPVLAA----------- 519 (1167)
Q Consensus 456 ~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l-----~~ll~~l~~~----------- 519 (1167)
.+...+++|+..++|...-...|. ...+...|...+..... +...+++ +.+.+.+...
T Consensus 113 ~lkk~lsp~LK~li~~wl~~~~d~--~~~vs~aa~~sf~~~f~----~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd 186 (1312)
T KOG0803|consen 113 KLKKKLSPFLKSLIPPWLGGQFDL--DYPVSEAAKASFKDGFA----EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSD 186 (1312)
T ss_pred HHHHHhhHHHHhhhhhhhheeccc--chHHHHHHHHHHHhhcC----hhhhHHHHHHhhHHHHHHHHHHHhccCccccch
Confidence 999999999999999988776665 23455555554444332 1111111 1222222211
Q ss_pred --------hcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHH--HHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 001062 520 --------VGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY--NAIMSRLTNQDQDQEVKECAISCMGLVI 589 (1167)
Q Consensus 520 --------l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~--~~ll~~l~~~d~~~~vr~~Ai~alg~l~ 589 (1167)
++.+++++..+++.++..+.+..++...- ....+-...+. +.+...+ ++..+.++.+....+-.++
T Consensus 187 ~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el--~~~~~~~kt~~s~~~fWk~~--~~k~~~i~~~~~ell~~l~ 262 (1312)
T KOG0803|consen 187 LRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEEL--HSLSEKEKTFLSSEKFWKLL--KSKSPSIKVALLELLLSLI 262 (1312)
T ss_pred hhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhh--hhhhhhhhhhhhHHHHHHHh--cCCCcchhHHHHHHHHHHH
Confidence 12356789999999999888766553210 00001111111 1222223 2455678888888888777
Q ss_pred HhcCcc
Q 001062 590 STFGDN 595 (1167)
Q Consensus 590 ~~~g~~ 595 (1167)
......
T Consensus 263 ~~i~~~ 268 (1312)
T KOG0803|consen 263 DDILNR 268 (1312)
T ss_pred hhhHHh
Confidence 665444
No 238
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.54 E-value=11 Score=42.29 Aligned_cols=220 Identities=14% Similarity=0.120 Sum_probs=107.4
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccC------CChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFK------ADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE 79 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~------~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~ 79 (1167)
+-.++.+. +.++|...-.+.-+...+..+... ............+++.++.++.-++..|+.+++.+...-+.
T Consensus 60 ~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 60 FLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp --HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 34677777 667777766676666666543211 00011122678888999999999999999999999976654
Q ss_pred hhHH---HHHHHHHHHhcC----CCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhh-----hccCCChhHHH
Q 001062 80 PRVV---EMTDKLCIKLLN----GKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGI-----TLKDMNTEIRC 147 (1167)
Q Consensus 80 ~~~~---~l~~~L~~~~~~----~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l-----~~~~~~~~v~~ 147 (1167)
..-. .+++.+++.+.+ ++.+.+.++..+|..++..-+..... +-...++.+.+.+ .+........-
T Consensus 139 ~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f--~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 139 RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF--WKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH--HTHHHHHHHHHHHH---------HHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH--HhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 4333 566666666553 33345577777777776322211111 0133344444444 11111122222
Q ss_pred HHHHHHHHHHHHhcc----chhHHHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcCHHH----HHHHHHHHHHHhh
Q 001062 148 ECLDILCDVLHKFGN----LMSNDHERLLSALLPQLSA-NQASVRKKSVSCIASLASSLSDDL----LAKATIEVVRNLR 218 (1167)
Q Consensus 148 ~~~~~L~~l~~~~g~----~l~~~~~~l~~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~~~----~~~l~~~l~~~l~ 218 (1167)
.++-++=-+ .|.+ .+... .+++.+...++. .+.+|-+-++.++-.+.....+.. +..=+..+++.++
T Consensus 217 ~~ll~lWlL--SF~~~~~~~~~~~--~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 217 QALLCLWLL--SFEPEIAEELNKK--YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHH--TTSHHHHHHHHTT--SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHH--hcCHHHHHHHhcc--chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 222222111 1111 11111 167777777654 344777778888888887766432 2333445556666
Q ss_pred cCCCChHHHHHHHH
Q 001062 219 SKGAKPEMIRTNIQ 232 (1167)
Q Consensus 219 ~~~~~~~~r~~~~~ 232 (1167)
..+|.++.-..-++
T Consensus 293 ~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 293 ERKWSDEDLTEDLE 306 (312)
T ss_dssp SS--SSHHHHHHHH
T ss_pred cCCCCCHHHHHHHH
Confidence 66665444333333
No 239
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.35 E-value=28 Score=43.29 Aligned_cols=116 Identities=21% Similarity=0.214 Sum_probs=66.8
Q ss_pred hhhhHHHHHHHHHHHhhc---------CCcchhHHHHHHHHHhhcC-CCCchHHHHHHHHHHhhhhccCCCCCccchHHH
Q 001062 787 KQAMYSIAQCVAVLCLAA---------GDQKCSSTVKMLTDILKDD-SSTNSAKQHLALLCLGEIGRRKDLSSHEHIENV 856 (1167)
Q Consensus 787 ~~a~~~~a~~i~~~~~~~---------~~~~~~~~~~~l~~~l~~~-~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~ 856 (1167)
..+..+++..+...|... .......+++.|...+... ...+...+..+|.+||-+|. +...+.
T Consensus 453 ~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------~~~i~~ 525 (618)
T PF01347_consen 453 ETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------PESIPV 525 (618)
T ss_dssp HHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------GGGHHH
T ss_pred HHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------chhhHH
Confidence 345555555555555431 1112233444454444421 01355667888888888763 566778
Q ss_pred HHHhcCCC---hhhHHHHHHHHHHhhhhcCcccchHHHHHHhhc---ccchhHHHHHHH
Q 001062 857 IIESFQSP---FEEIKSAASYALGNIAVGNLSKFLPFILDQIDN---QQKKQYLLLHSL 909 (1167)
Q Consensus 857 l~~~l~~~---~e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~---~~~~~~~~l~aL 909 (1167)
+...+.+. +..+|.+|..||.+++...+....+.++.-+.+ +++.|..++..|
T Consensus 526 l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 526 LLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 88888766 688999999999988777776666666666654 344565554433
No 240
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=88.21 E-value=1.8 Score=42.17 Aligned_cols=117 Identities=18% Similarity=0.281 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh----------------hhhhcc
Q 001062 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG----------------YRFGPH 248 (1167)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~----------------~~~~p~ 248 (1167)
.||.+.+.+++.++...-++.+..+++.+++.++.. ......++..+..+.+... ..+..+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~---~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS---PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 578888888888887765555667777777777653 2455566666666655432 124455
Q ss_pred hhhhHHHHHHHhhhcCCCC-hhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhc
Q 001062 249 LGDTVPVLIDYCTSASEND-EELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1167)
Q Consensus 249 l~~lvp~l~~~l~~~~e~~-~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~ 305 (1167)
.+.+++++.+.++...+.. +++...+++++..++...+.+.-.- ..+++.+.+++.
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~ 136 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQ 136 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcC
Confidence 6777777777776632122 7888999999999998765431100 125666666663
No 241
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=87.81 E-value=91 Score=39.75 Aligned_cols=245 Identities=16% Similarity=0.175 Sum_probs=128.3
Q ss_pred chHHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh
Q 001062 2 ANLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR 81 (1167)
Q Consensus 2 ~~~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~ 81 (1167)
.+...-.++.|+.+-|+-+|+.|+..|...++... +.....+++.++++.+.|.-..+|-...-|++.+.. .+.-.
T Consensus 71 ~~k~~ldlf~klas~l~~~r~~aa~~Ll~~lq~~~---~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~~-~kai~ 146 (1129)
T KOG1926|consen 71 QIKEKLDLFTKLASSLRPVRLAAAFQLLADLQELR---DAEELSYVLNRLIRGLSSDRESARLGFSLILTEVLR-PKAIE 146 (1129)
T ss_pred cchHHHHHHHHHHhhcHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhhc-cccch
Confidence 34445578899999999999999999998887533 567889999999999998888899999999987762 11111
Q ss_pred HHHHHHHHHHHhc---C--CCcchhcHH---HHHHHHHH-----hhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHH
Q 001062 82 VVEMTDKLCIKLL---N--GKDQHRDIA---SIALKTII-----AEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCE 148 (1167)
Q Consensus 82 ~~~l~~~L~~~~~---~--~~~~~r~~a---~~aL~~~~-----~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~ 148 (1167)
...+++.+.+... + .....+.++ .+++.+++ .+-...+ -..+...+.-.+++.-- + .......
T Consensus 147 a~~vL~~i~~~~~~~~~~~~gkd~k~~~~G~Lf~l~si~~s~~l~~~~s~k-~~e~~~~f~~~l~~LA~-k--k~~L~~~ 222 (1129)
T KOG1926|consen 147 ATSVLSTILQVLLVSSAKMKGKDEKLVAFGNLFGLESILQSGILKEASSVK-KDEKFKRFTDLLLQLAL-K--KNWLQEP 222 (1129)
T ss_pred HHHHHHHHHHHHhhhcccccCccccchhhhhHHHHHHHHhhhHHHhhhhcc-ccHHHHHHHHHHHHHhh-h--HHHHHhH
Confidence 1234444443322 1 111122222 23333333 1000000 00111122212211111 1 1235667
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHhhcCCCChHHH
Q 001062 149 CLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LLAKATIEVVRNLRSKGAKPEMI 227 (1167)
Q Consensus 149 ~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~r 227 (1167)
+.+++-..+..++.. +.....++.+.+.++.+.....-.. .++-......++. .+..++.... .+++. +..
T Consensus 223 c~~il~~sv~qlp~~--~~~~~~~ea~~~~l~ke~~~l~~~g-~~l~l~l~~~~k~~k~~~il~~~~---~~d~~--p~~ 294 (1129)
T KOG1926|consen 223 CVEILLLSVKQLPAS--PFEEHVLEALLPLLTKEQLTLVMNG-DSLLLVLAKLPKVVKFEPILDDLV---WKDDY--PLQ 294 (1129)
T ss_pred HHHHHHHHHHhccch--HHHHHHHHhhhhhcChHhhhhhccc-chhHHHHHhhhhhhcccHHHHhhc---cCCcc--HHH
Confidence 777777777766654 3455577777777766654222222 1111122222222 1233333332 22221 223
Q ss_pred HHHHHHHHHHHHHh---------h----hhhhcchhhhHHHHHHHhhh
Q 001062 228 RTNIQMVGALSRAV---------G----YRFGPHLGDTVPVLIDYCTS 262 (1167)
Q Consensus 228 ~~~~~~l~~l~~~~---------~----~~~~p~l~~lvp~l~~~l~~ 262 (1167)
...+-.+..+-+.. + ....||++.+.|.++.....
T Consensus 295 ~~~l~s~s~vt~qg~~~~~as~t~~~~~~~wqp~l~~~wp~~l~~~~~ 342 (1129)
T KOG1926|consen 295 LANLFSLSKVTRQGVYALLASETGESVNTFWQPYLHSLWPWLLAMFLQ 342 (1129)
T ss_pred HHHHhhhhHHhhcccccccccccccccccccchhhhHHHHHHHHHhcc
Confidence 33333333332221 1 12478999999999987655
No 242
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=87.44 E-value=46 Score=35.88 Aligned_cols=147 Identities=19% Similarity=0.204 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhhhccC---CChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 001062 125 HTSLTPQLTKGITLKD---MNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL 201 (1167)
Q Consensus 125 ~~~i~p~Ll~~l~~~~---~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~ 201 (1167)
+-..+|.+++.+.++. ++.. ..++.+.|+.+++..|. +....++..+.+.--. ....-..+.+..+..++
T Consensus 109 ~la~LP~ll~~~d~~~~i~~~~~-~~~~A~~La~~a~~~~~---~~La~il~~ya~~~fr---~~~dfl~~v~~~l~~~f 181 (262)
T PF14225_consen 109 LLALLPRLLHAFDDPNPIQPDQE-CIEIAEALAQVAEAQGL---PNLARILSSYAKGRFR---DKDDFLSQVVSYLREAF 181 (262)
T ss_pred HHHHHHHHHHHhcccccccccHH-HHHHHHHHHHHHHhCCC---ccHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHh
Confidence 3456899999888764 1223 33455777777765444 2344444444332211 11122223334444444
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 001062 202 SDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESF 281 (1167)
Q Consensus 202 ~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l 281 (1167)
.+++-.+++..++..+.+.. .-.|...++.+..+.....-+ .|+-++++..+++.++. +....|++.+...
T Consensus 182 ~P~~~~~~l~~Ll~lL~n~~--~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t------~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 182 FPDHEFQILTFLLGLLENGP--PWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQT------DLWMEALEVLDEI 252 (262)
T ss_pred CchhHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCC------ccHHHHHHHHHHH
Confidence 33333556777777776543 357888999999988876544 56778888888988876 2445578888777
Q ss_pred HHhCCc
Q 001062 282 LLRCPR 287 (1167)
Q Consensus 282 ~~~~~~ 287 (1167)
+...+.
T Consensus 253 v~~s~s 258 (262)
T PF14225_consen 253 VTRSGS 258 (262)
T ss_pred Hhhccc
Confidence 766543
No 243
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=87.03 E-value=40 Score=37.15 Aligned_cols=122 Identities=14% Similarity=0.172 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCCh
Q 001062 104 ASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQ 183 (1167)
Q Consensus 104 a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~ 183 (1167)
|.-....+++.+.++.+ ..-+....|-|+..+... +-.||...++++...+-..|..+.+..+.++..+++.+.++.
T Consensus 75 aLevY~~IF~~ig~~~L-~~dl~i~~~GLfpl~~~a--si~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~ 151 (307)
T PF04118_consen 75 ALEVYEYIFERIGPDGL-AQDLPIYSPGLFPLFSYA--SIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEG 151 (307)
T ss_pred HHHHHHHHHHhcCHHHH-HhhcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCC
Confidence 33333444555554321 112233445555555543 467899999999988888899888999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001062 184 ASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1167)
Q Consensus 184 ~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l 234 (1167)
..+..++...+..+....++++| ...+...+... .+.|..++..+
T Consensus 152 sE~~~~~~~ll~~l~~~v~~~~F---~~~lwl~ii~s---p~~Rl~al~~l 196 (307)
T PF04118_consen 152 SEFFDRTLKLLDKLKEAVGDKYF---WQCLWLCIITS---PSRRLGALNYL 196 (307)
T ss_pred chHHHHHHHHHHHHHHhcChhHH---HHHHHHHHhcC---cchhHHHHHHH
Confidence 89999999999999999998843 22233333332 24565555443
No 244
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=86.58 E-value=46 Score=40.94 Aligned_cols=92 Identities=23% Similarity=0.224 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHhhhhccCCCCCccchHHHHHHhcC---CChhhHHHHHHHHHHhhhhcCccc
Q 001062 811 STVKMLTDILKDD-SSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQ---SPFEEIKSAASYALGNIAVGNLSK 886 (1167)
Q Consensus 811 ~~~~~l~~~l~~~-~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~l~~~l~---~~~e~vr~aaa~aLG~l~~~~~~~ 886 (1167)
.+++.+...+... ...+...+...|.+||-+|- +.....+...+. ..+..+|.+|..||.+++..++..
T Consensus 442 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~ 514 (574)
T smart00638 442 ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK 514 (574)
T ss_pred HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH
Confidence 3444444444331 11344456777788886653 344455555554 235789999999999998878877
Q ss_pred chHHHHHHhhc---ccchhHHHHHHH
Q 001062 887 FLPFILDQIDN---QQKKQYLLLHSL 909 (1167)
Q Consensus 887 ~lp~l~~~l~~---~~~~~~~~l~aL 909 (1167)
.-+.++.-+.+ +++.|..++..|
T Consensus 515 v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 515 VQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 77777777665 345676655544
No 245
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=86.55 E-value=21 Score=39.47 Aligned_cols=55 Identities=20% Similarity=0.151 Sum_probs=35.5
Q ss_pred cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhc
Q 001062 37 FKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLL 94 (1167)
Q Consensus 37 ~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~ 94 (1167)
|++=+.....-++.=+.+.+|.+--||.+|++-|+.+... +.+..+.+.|.+.+.
T Consensus 52 fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 52 FKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLN 106 (460)
T ss_pred HhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHH
Confidence 3333444455566666677788888899998888877654 555555555555553
No 246
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.50 E-value=4.5 Score=40.58 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC
Q 001062 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1167)
Q Consensus 206 ~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~ 285 (1167)
+..+++....++.+.+. .-|-.+-+-+..+....|+++-|.+|+++..+-..+.. -|.|+...+++++..++...
T Consensus 112 y~~yLp~F~dGL~e~~h--pyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~t---rd~ev~~~~Lkvlq~lv~~~ 186 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDH--PYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVT---RDDEVICRTLKVLQQLVVSV 186 (262)
T ss_pred chHHHHHHhhhhhhcCC--CcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHhc
Confidence 45677777777766543 34556667777788888899999999999999999998 78999999999999988764
Q ss_pred ---CccccccHHHHHHHHHHhh
Q 001062 286 ---PRDISSYCDEILHLTLEYL 304 (1167)
Q Consensus 286 ---~~~~~~~l~~ii~~~~~~l 304 (1167)
+..+-||..++++.+-.+=
T Consensus 187 ~~vG~aLVPfYRQlLp~~n~~k 208 (262)
T KOG3961|consen 187 GCVGAALVPFYRQLLPVLNTFK 208 (262)
T ss_pred cccchhhhhHHHHhhhhhhhhc
Confidence 3567799999999876543
No 247
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.05 E-value=5 Score=51.97 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=75.1
Q ss_pred cchhhHHHHHhhhccccCcccchHHHHHhhc---CCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChH
Q 001062 944 EGVRNVVAECLGKIALIEPAKLVPALKVRTT---SSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRH 1020 (1167)
Q Consensus 944 e~vr~~aa~~Lg~l~~~~~~~~lp~l~~~~~---~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~ 1020 (1167)
+.+-..++.|+++.+..++.++-|..++.++ +.+...|+.++..++..++..++.+...+...+|-+-+.+.|.+.+
T Consensus 1518 ~~v~~~li~~i~~~~~a~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~ 1597 (1621)
T KOG1837|consen 1518 DIVSKLLIAEIASDSVADKDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDE 1597 (1621)
T ss_pred hHHHHHHHHHHHhhccCChhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHH
Confidence 3455668889999999888777787777654 5567899999999999999888777778877787777789999999
Q ss_pred HHHHHHHHHHHHHhcCch
Q 001062 1021 VRRAAVLALSTFAHNKPN 1038 (1167)
Q Consensus 1021 vr~~a~~~L~~~a~~~p~ 1038 (1167)
|...+...+..+=+.-++
T Consensus 1598 Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1598 VECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred HHHHHHHHHHHHHHHhch
Confidence 999998866655444333
No 248
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.78 E-value=1.2e+02 Score=38.17 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=68.6
Q ss_pred HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 001062 510 KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVI 589 (1167)
Q Consensus 510 ~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~ 589 (1167)
.+|+......+.++...+|..++.++..-+-.+... ...+-|.+.+.+|.+++++.. .++-+-++|+.|+..+.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~----~n~LlPlvhq~W~~vie~~~~--k~~L~v~~a~~~i~~m~ 875 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATY----HNLLLPLVHQTWPSVIECLLC--KDPLIVQRAFSCIEQMG 875 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhcc----chhHhHHHHhhhhHHHHHHhc--CchHHHHHHHHHHHHHH
Confidence 344555555667777889999999988765544332 345788899999999999974 45678899999999999
Q ss_pred HhcCccccc-chhhhHHHHH
Q 001062 590 STFGDNLGA-ELPACLPVLV 608 (1167)
Q Consensus 590 ~~~g~~l~~-~~~~~l~~L~ 608 (1167)
...|+.+.. .++.++|-+-
T Consensus 876 ~~sgDFv~sR~l~dvlP~l~ 895 (1014)
T KOG4524|consen 876 KYSGDFVASRFLEDVLPWLK 895 (1014)
T ss_pred HHhhhHHHHHHHHHHHHHHH
Confidence 999987754 5566666554
No 249
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.60 E-value=98 Score=37.06 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=71.1
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh-hhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCch
Q 001062 427 IVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI-GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVF 505 (1167)
Q Consensus 427 l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l-~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~ 505 (1167)
+++.+.+.+.+++..+...++.++..++-.++.--+.++ ...+..+...+.+. +..+|..++++++.++-+.. +.+
T Consensus 420 v~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~--~~n~r~~~~~~Lr~l~f~~d-e~~ 496 (678)
T KOG1293|consen 420 VAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP--DFNSRANSLWVLRHLMFNCD-EEE 496 (678)
T ss_pred hHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC--CchHHHHHHHHHHHHHhcch-HHH
Confidence 444555566777776777777777777655543222222 23455666666666 45788999999998876543 232
Q ss_pred h--hhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001062 506 H--PYIKALSSPVLAAVGERYYKVTAEALRVCGELV 539 (1167)
Q Consensus 506 ~--~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1167)
+ ++-.-....+....+|+++.|+..++..+.++.
T Consensus 497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 2 222333445556678999999999998888875
No 250
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.56 E-value=1.6e+02 Score=39.32 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=81.5
Q ss_pred CcchHHHHHHHHHHHHHHhc--CChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchH
Q 001062 340 DASWKVRRAAAKCLAALIVS--RPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1167)
Q Consensus 340 d~sw~vR~aA~~~l~~li~~--~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~ 417 (1167)
+.+|++|.+..+-+...+-. ++ .-..--+.+--.+...+.|.+-.||..+..++..+++....
T Consensus 1538 ~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~-------------- 1602 (1710)
T KOG1851|consen 1538 SSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF-------------- 1602 (1710)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc--------------
Confidence 35899999998888776542 33 11111222323334456788778999999999988864321
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHH
Q 001062 418 WLLKQEVSKIVKSINRQLRE--KSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRL 495 (1167)
Q Consensus 418 ~~l~~~~~~l~~~l~~~L~~--~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~ 495 (1167)
...+...+........ +.....++++-.+++++..+|-.+...++..+..+...-+++ ..++.++-..+..
T Consensus 1603 ----~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~---~~i~~tvkktvse 1675 (1710)
T KOG1851|consen 1603 ----QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES---AAIKQTVKKTVSE 1675 (1710)
T ss_pred ----ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc---hHHHHHHHHHHHH
Confidence 1111122222222222 223456788889999999998877666666666666555544 2455555555555
Q ss_pred HhccC
Q 001062 496 VLSSH 500 (1167)
Q Consensus 496 l~~~~ 500 (1167)
+=..|
T Consensus 1676 Frrth 1680 (1710)
T KOG1851|consen 1676 FRRTH 1680 (1710)
T ss_pred HHHHh
Confidence 54444
No 251
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=84.53 E-value=73 Score=35.55 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=24.4
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 001062 169 ERLLSALLPQLSANQASVRKKSVSCIASLASS 200 (1167)
Q Consensus 169 ~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~ 200 (1167)
.+-+..-+....+.+..||+.|+..|..++.-
T Consensus 60 ~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 60 DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 33444556667788889999999999988865
No 252
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=84.32 E-value=51 Score=35.48 Aligned_cols=171 Identities=15% Similarity=0.220 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHHHHHhcCC-------hhh-HHHHHHHhhHHHhhh-ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCC
Q 001062 342 SWKVRRAAAKCLAALIVSRP-------EML-SKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNN 412 (1167)
Q Consensus 342 sw~vR~aA~~~l~~li~~~~-------~~l-~~~~~~i~p~L~~~l-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~ 412 (1167)
+|+.=|-+..+++.++...| ..+ .+.+..+...++..+ +=|+..+-..+..+|..+++..-...
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~------- 132 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSN------- 132 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCC-------
Confidence 79988888899999885432 111 123444444444443 44555566667777777776553210
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhccC-Ch---hhHH-HHHHH-HHHHHHhcCchhHhhhhhhHHHHHHhcccCCCC----
Q 001062 413 ELNPRWLLKQEVSKIVKSINRQLREK-SI---KTKV-GAFSV-LRELVVVLPDCLADHIGSLIPGIEKSLNDKSST---- 482 (1167)
Q Consensus 413 ~~~p~~~l~~~~~~l~~~l~~~L~~~-~~---~~r~-~~~~~-l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~---- 482 (1167)
. ..+...-..-++.+...+.++ .. -+|. +++.. +..+...-|+.-.+.++..+..+.+.-..+...
T Consensus 133 --~--~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~ 208 (255)
T PF10350_consen 133 --N--PELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDE 208 (255)
T ss_pred --C--chHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCccccccc
Confidence 0 123333333445555555544 11 2443 44543 455555555432245666677776666544221
Q ss_pred --chHHHHHHHHHHHHhccCC-CCchhhhhHhhHHHHHHHhcCC
Q 001062 483 --SNLKIEALTFTRLVLSSHS-PPVFHPYIKALSSPVLAAVGER 523 (1167)
Q Consensus 483 --~~~~~~al~~l~~l~~~~~-~~~~~~~l~~ll~~l~~~l~d~ 523 (1167)
..-+.-|+++++.++.... .+...+|+...+...+.++.++
T Consensus 209 ~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~s~ 252 (255)
T PF10350_consen 209 KSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFSSP 252 (255)
T ss_pred ccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 2467788999999986421 2455567766666666655544
No 253
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=84.15 E-value=3.7 Score=36.16 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=39.4
Q ss_pred CcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCCh--hHHHHHHHHHHHH
Q 001062 340 DASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREE--NVKMDVFNTFIEL 397 (1167)
Q Consensus 340 d~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~--~vr~~~~~~l~~l 397 (1167)
|..|.+|.-|++.++.+...+.+.-..+-..+.-.+.+.|.|+.. .....++.++..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 347999999999999999887755444555666677777765543 3445555555443
No 254
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=83.89 E-value=97 Score=36.45 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhH
Q 001062 383 EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLA 462 (1167)
Q Consensus 383 ~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~ 462 (1167)
++.+-..++..+..+++...+ ..|.+ .+.+..++..+.+.+.++..++|-.+++++.-+....++--.
T Consensus 60 ~~si~dRil~fl~~f~~Y~~~----------~dpeg--~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe 127 (885)
T COG5218 60 NPSIPDRILSFLKRFFEYDMP----------DDPEG--EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE 127 (885)
T ss_pred CCCcHHHHHHHHHHHHHhcCC----------CChhh--hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH
Confidence 455555667777777763221 11211 456677888888888888889999999999888876654323
Q ss_pred hhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHH
Q 001062 463 DHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALR 533 (1167)
Q Consensus 463 ~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~ 533 (1167)
.-+..++..+.+-+-|+ .+.+|.+|..+++.+-+-.+. -...+..++..+++ +|++.+||..|+-
T Consensus 128 ~l~N~L~ekl~~R~~DR--E~~VR~eAv~~L~~~Qe~~~n--een~~~n~l~~~vq--nDPS~EVRr~all 192 (885)
T COG5218 128 VLANGLLEKLSERLFDR--EKAVRREAVKVLCYYQEMELN--EENRIVNLLKDIVQ--NDPSDEVRRLALL 192 (885)
T ss_pred HHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHhccCC--hHHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence 34666666676666677 457999999999887643221 11122223322222 4788899987754
No 255
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.81 E-value=1.7e+02 Score=39.07 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=83.8
Q ss_pred hhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 001062 465 IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1167)
Q Consensus 465 l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1167)
.+.++..+.....+. .+..+|..++.++..++-.+.........+.|-..+...++|..-.++.+|..+++-+...- .
T Consensus 1524 ~~e~l~~l~~~~~~~-~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s-~ 1601 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADS-STWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS-K 1601 (1710)
T ss_pred HHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc-c
Confidence 344444444433333 35789999999999887654433445567788888888999887789999999999887531 1
Q ss_pred CccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhc
Q 001062 545 SVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMG 612 (1167)
Q Consensus 545 ~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~ 612 (1167)
..+.+ +.-............+....-.|.-++|.++-.++-.+...++..+..+....+
T Consensus 1602 ------~~~~~---~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~ 1660 (1710)
T KOG1851|consen 1602 ------FQFVS---DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFAR 1660 (1710)
T ss_pred ------cccch---HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcC
Confidence 01122 122222222222233444456678899999988776664455555555544333
No 256
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=83.55 E-value=12 Score=46.31 Aligned_cols=158 Identities=12% Similarity=0.097 Sum_probs=97.1
Q ss_pred HHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHH
Q 001062 129 TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAK 208 (1167)
Q Consensus 129 ~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~ 208 (1167)
+..|+..|++++ -.+.+++-..+-+.+..- ..+-++..++... ++..+..++..++..-.+ .=..
T Consensus 6 ~~~l~~~l~s~~--~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~y~------~~t~s~~~~~il~~~~~P-~~K~ 70 (668)
T PF04388_consen 6 ITELLSLLESND--LSVLEEIKALLQELLNSD------REPWLVNGLVDYY------LSTNSQRALEILVGVQEP-HDKH 70 (668)
T ss_pred HHHHHHHhcCCc--hhhHHHHHHHHHHHhhcc------chHHHHHHHHHHH------hhcCcHHHHHHHHhcCCc-cHHH
Confidence 445666666543 445555555555444332 1223344444442 122233344444433322 1112
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCc
Q 001062 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1167)
Q Consensus 209 l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~ 287 (1167)
++..+-..+.++ ..|..++.+|+.+++.-|..+-.-+ ..+++.++.++..+ .+.-+-..|+.++..++..+|.
T Consensus 71 ~~~~l~~~~~~~----~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D--~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 71 LFDKLNDYFVKP----SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFD--TSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred HHHHHHHHHcCc----hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhc--ccHHHHHHHHHHHHHHhccccc
Confidence 233334444443 4688999999999998765543333 25788888888773 5566778899999999999999
Q ss_pred cccccHHHHHHHHHHhhccC
Q 001062 288 DISSYCDEILHLTLEYLSYD 307 (1167)
Q Consensus 288 ~~~~~l~~ii~~~~~~l~~d 307 (1167)
.+.+|+++++.+...++..+
T Consensus 145 ~l~~~L~~Lf~If~Rl~~W~ 164 (668)
T PF04388_consen 145 SLGPHLPDLFNIFGRLLSWE 164 (668)
T ss_pred hhhHHHHHHHHHHHHHHHcc
Confidence 99999999999998887643
No 257
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.53 E-value=11 Score=38.48 Aligned_cols=80 Identities=11% Similarity=0.133 Sum_probs=64.6
Q ss_pred ccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhc
Q 001062 963 AKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKG 1042 (1167)
Q Consensus 963 ~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~ 1042 (1167)
..|++.+.+...+++...|..++..++.++..+.. . =..+++.++....|++..+|..|...+..+..+.|..+..
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--n--P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLV--N--PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--C--hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence 36788888888788889999999999877776641 1 1247888888888999999999999999999999998766
Q ss_pred hhhh
Q 001062 1043 LLPE 1046 (1167)
Q Consensus 1043 ~l~~ 1046 (1167)
.+.+
T Consensus 83 ~~~~ 86 (187)
T PF12830_consen 83 RYSE 86 (187)
T ss_pred HHHH
Confidence 6554
No 258
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=81.75 E-value=5.8 Score=50.52 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 206 ~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
..-+++.++..+..+.. -.|..+-+.|+.++..
T Consensus 587 ~~vlveiLLslls~~s~--llR~~~~~vf~~~~~~ 619 (784)
T PF04931_consen 587 SEVLVEILLSLLSQPSA--LLRKVSEQVFEAFCPH 619 (784)
T ss_pred HHHHHHHHHHHHhCcch--HHHHHHHHHHHHHHhh
Confidence 44456666666665543 6777777888777643
No 259
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.59 E-value=77 Score=33.64 Aligned_cols=138 Identities=14% Similarity=0.033 Sum_probs=76.2
Q ss_pred hcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHH-H
Q 001062 54 QLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQ-L 132 (1167)
Q Consensus 54 ~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~-L 132 (1167)
.-+.++++++....++++.++.+-. .....++..|......+..+.+.++...+-.+.+.-+. .+ +.++.++-. .
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r--~f-~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR--HF-PFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch--HH-HHHHHHHHHHH
Confidence 4557888999999999988886553 44455555555555544433322222222223322221 11 111111111 1
Q ss_pred HH---hhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhh-cCChHHHHHHHHHHHHHHHh
Q 001062 133 TK---GITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQL-SANQASVRKKSVSCIASLAS 199 (1167)
Q Consensus 133 l~---~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l-~~~~~~vrk~a~~~l~~l~~ 199 (1167)
++ ...+.+..++.....-..+.+++...+. +..++++.+...+ .+....++.-|++++..+..
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 11 1111111333344433456666666555 7778888888888 67777899999999988883
No 260
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=48 Score=39.48 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=43.6
Q ss_pred hHHHHHHhcCCChhhHHHHHHHHHHhhhhcCcccchHHHHHHhhc--ccchhHHHHHHHHHHH
Q 001062 853 IENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDN--QQKKQYLLLHSLKEVI 913 (1167)
Q Consensus 853 ~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~--~~~~~~~~l~aLkei~ 913 (1167)
....|=..+.-.++.+|++.-.|+|-++++||+.-+=.-++++.. +.+..+....|++=+.
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamGLiG 703 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIG 703 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhcccc
Confidence 455566666778999999999999999999998755555555544 3445566666666544
No 261
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=81.08 E-value=6 Score=34.82 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=49.6
Q ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChH--HHHHHHHHHHHHHHh
Q 001062 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA--SVRKKSVSCIASLAS 199 (1167)
Q Consensus 142 ~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~--~vrk~a~~~l~~l~~ 199 (1167)
+|.+|..|-.+|+.++.+++.....-.+.+...+.+.+.+++. ..+=.|+.+|..++.
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999998777888999999999887654 677788888887754
No 262
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=81.07 E-value=2.8 Score=30.36 Aligned_cols=30 Identities=23% Similarity=0.078 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHhh
Q 001062 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLV 74 (1167)
Q Consensus 45 ~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~ 74 (1167)
...++.|+++|.+++.+||..|+.+|+.++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 346899999999999999999999999876
No 263
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.01 E-value=7.8 Score=39.51 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcC
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~ 78 (1167)
-+..+++-..++|..+|..|+.-+...+..+-.+. ...++.++-+..||++.+|+.|.+++..+.++.+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 35667777888999999999999888887644322 3678888889999999999999998888876553
No 264
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=80.46 E-value=1.1e+02 Score=34.88 Aligned_cols=244 Identities=16% Similarity=0.159 Sum_probs=121.5
Q ss_pred HHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHH----HHHHHH-HhcC--CC
Q 001062 25 TSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM----TDKLCI-KLLN--GK 97 (1167)
Q Consensus 25 l~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l----~~~L~~-~~~~--~~ 97 (1167)
+|+|.+.+++..--..+-....+.+.+...+-+++.+||.+|.+++-.+.... +.+..+ ++.++. .+.. .+
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~ 81 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKN 81 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCC
Confidence 47777777652211123455566666665444444999999999887666322 112111 222221 2222 23
Q ss_pred cchhcHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh--HHHHHHHHH
Q 001062 98 DQHRDIASIALKTIIAEVT-TSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS--NDHERLLSA 174 (1167)
Q Consensus 98 ~~~r~~a~~aL~~~~~~~~-~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~--~~~~~l~~~ 174 (1167)
...|+-|.--.+.+++--. ...+...+++.+ ....+++ ++..|.-++++|.+++-..+..+. .-...++..
T Consensus 82 ~~ER~QALkliR~~l~~~~~~~~~~~~vvral----vaiae~~--~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKKGPKEIPRGVVRAL----VAIAEHE--DDRLRRICLETLCELALLNPELVAECGGIRVLLRA 155 (371)
T ss_pred hHHHHHHHHHHHHHHHhcCCcccCCHHHHHHH----HHHHhCC--chHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHH
Confidence 3457777666666665311 112223334433 3333433 578999999999999877666542 233334444
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HH--HHHHHHHHHHhhcC-----CCCh--HHHHHHHHHHHHHHHHhhhh
Q 001062 175 LLPQLSANQASVRKKSVSCIASLASSLSDD-LL--AKATIEVVRNLRSK-----GAKP--EMIRTNIQMVGALSRAVGYR 244 (1167)
Q Consensus 175 ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~--~~l~~~l~~~l~~~-----~~~~--~~r~~~~~~l~~l~~~~~~~ 244 (1167)
++ ++...+....+.++-.+...-... ++ +.-++.++..+.+. +.+. +....+..++..+.++-+.-
T Consensus 156 l~----d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL 231 (371)
T PF14664_consen 156 LI----DGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL 231 (371)
T ss_pred HH----hccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce
Confidence 33 322223333333333333221111 11 11233334333332 1112 23445667777777764331
Q ss_pred --hhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 001062 245 --FGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1167)
Q Consensus 245 --~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~ 283 (1167)
|.-+=..-+..+++.+.. ..+++|+..+..+-.+..
T Consensus 232 l~l~~~~~~~lksLv~~L~~---p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 232 LYLSMNDFRGLKSLVDSLRL---PNPEIRKAILDLLFDLLR 269 (371)
T ss_pred eeeecCCchHHHHHHHHHcC---CCHHHHHHHHHHHHHHHC
Confidence 111101345556666666 677888887776655543
No 265
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=80.27 E-value=80 Score=33.01 Aligned_cols=88 Identities=17% Similarity=0.040 Sum_probs=70.1
Q ss_pred HHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHhhhhcChh-hHHH
Q 001062 7 AAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL-DDVAGDVSGLAVKCLAPLVKKVSEP-RVVE 84 (1167)
Q Consensus 7 ~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L-~d~~~~Vr~~A~~~l~~l~~~~~~~-~~~~ 84 (1167)
..+..++.+.|+..|--|+..|.+.|.......++....++-..|+=++ ....+.||+.-+..|+.++..++.. ....
T Consensus 3 ~~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~ 82 (217)
T PF05997_consen 3 IKFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALL 82 (217)
T ss_pred cHHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHH
Confidence 3577889999999999999999999998655446777888888888665 3556789999999999999988776 5556
Q ss_pred HHHHHHHHhc
Q 001062 85 MTDKLCIKLL 94 (1167)
Q Consensus 85 l~~~L~~~~~ 94 (1167)
.+...+..+.
T Consensus 83 f~~~f~~tm~ 92 (217)
T PF05997_consen 83 FLKAFWETMR 92 (217)
T ss_pred HHHHHHHHHH
Confidence 6666666664
No 266
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=79.96 E-value=2.8 Score=30.36 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=26.5
Q ss_pred chHHHHHHhcCCChhhHHHHHHHHHHhhh
Q 001062 852 HIENVIIESFQSPFEEIKSAASYALGNIA 880 (1167)
Q Consensus 852 ~~~~~l~~~l~~~~e~vr~aaa~aLG~l~ 880 (1167)
+..+.+++++.+++++++..|+.|||+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999876
No 267
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=79.93 E-value=47 Score=37.39 Aligned_cols=150 Identities=11% Similarity=0.149 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh---hhHHHHHHHHHHHhc-----CCCcchhcHHHHHHHHHHhhcC
Q 001062 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE---PRVVEMTDKLCIKLL-----NGKDQHRDIASIALKTIIAEVT 116 (1167)
Q Consensus 45 ~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~---~~~~~l~~~L~~~~~-----~~~~~~r~~a~~aL~~~~~~~~ 116 (1167)
+++++.+..++.+.+.+.+-.+.-.||.+++.=.. -.-..++++|+..+. +++.+.+..++.|||.++--.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 45899999999999999999999999999974221 112355667776654 3445556677889998764433
Q ss_pred Cc-hhH-HHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh--HHHHHHHHHHhhhhcCChH-HHHHHHH
Q 001062 117 TS-SLA-QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS--NDHERLLSALLPQLSANQA-SVRKKSV 191 (1167)
Q Consensus 117 ~~-~~~-~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~--~~~~~l~~~ll~~l~~~~~-~vrk~a~ 191 (1167)
.. .+. .-+...|+|.+-- . .+.|....+-.+.-+...-....- ...++++..+..--++++- .|--.+.
T Consensus 394 nka~~~~aGvteaIL~~lk~----~--~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESn 467 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKL----A--SPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESN 467 (604)
T ss_pred chhhccccchHHHHHHHHHh----c--CCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhh
Confidence 32 121 2245566666532 1 234444444334333322211100 2334555555555555544 4555566
Q ss_pred HHHHHHHhh
Q 001062 192 SCIASLASS 200 (1167)
Q Consensus 192 ~~l~~l~~~ 200 (1167)
+.+..+..+
T Consensus 468 Rll~~lIkH 476 (604)
T KOG4500|consen 468 RLLLGLIKH 476 (604)
T ss_pred HHHHHHHHh
Confidence 666666554
No 268
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=79.90 E-value=51 Score=33.81 Aligned_cols=157 Identities=13% Similarity=0.064 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCC
Q 001062 144 EIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAK 223 (1167)
Q Consensus 144 ~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 223 (1167)
..-...+.+++.+.+++|..-.+....++..+-+.-.+++...|+.+-.|+|.....+|.+.+-+++|--+.. ++..
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~---~~~~ 91 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDN---ADDS 91 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccC---CCcC
Confidence 4567788899999999998766788888888777766666789999999999999999999766665533321 1111
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhc-----CCCChhHHH---HHHHHHHHHHHh--CCccccccH
Q 001062 224 PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA-----SENDEELRE---YSLQALESFLLR--CPRDISSYC 293 (1167)
Q Consensus 224 ~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~-----~e~~~e~re---~al~~l~~l~~~--~~~~~~~~l 293 (1167)
...|--.+-.+-.-. .+..++-|...++|..-.+-+.. ..+..+.|. ...+.+..+-.. .|.++...+
T Consensus 92 ~~~raWLLPlLr~~i--~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F 169 (198)
T PF08161_consen 92 QPGRAWLLPLLRDHI--RNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF 169 (198)
T ss_pred CcccchhHHHHHHhc--cCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH
Confidence 122222222222211 23455656667777665443221 011222221 123333333333 366776655
Q ss_pred HHHHHHHHHhhc
Q 001062 294 DEILHLTLEYLS 305 (1167)
Q Consensus 294 ~~ii~~~~~~l~ 305 (1167)
+.+...+.+.+.
T Consensus 170 ~~~a~~L~~~L~ 181 (198)
T PF08161_consen 170 PSFAKLLGNALY 181 (198)
T ss_pred HHHHHHHHHHHh
Confidence 777777777664
No 269
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=79.57 E-value=95 Score=33.47 Aligned_cols=126 Identities=17% Similarity=0.123 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhhhcCChH----HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 001062 167 DHERLLSALLPQLSANQA----SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1167)
Q Consensus 167 ~~~~l~~~ll~~l~~~~~----~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~ 242 (1167)
..-..+|.++..+.++.+ ..-..++..|+.++..-+..-+..++....++--+ ... +.+..+++..-
T Consensus 108 ~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr-----~~~----dfl~~v~~~l~ 178 (262)
T PF14225_consen 108 LLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKGRFR-----DKD----DFLSQVVSYLR 178 (262)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCC-----CHH----HHHHHHHHHHH
Confidence 344567888888877761 33345567777777654444455555444433111 111 33333444333
Q ss_pred hhhhc-chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhc
Q 001062 243 YRFGP-HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1167)
Q Consensus 243 ~~~~p-~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~ 305 (1167)
+.|.| |-..++-+++..+.+ .-+.+|..+++.+..++....-. +|+.++++..+++++.
T Consensus 179 ~~f~P~~~~~~l~~Ll~lL~n---~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~ 238 (262)
T PF14225_consen 179 EAFFPDHEFQILTFLLGLLEN---GPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQ 238 (262)
T ss_pred HHhCchhHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhC
Confidence 34443 557788888888887 67789999999999999886533 5788999999999986
No 270
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=78.67 E-value=1.7e+02 Score=39.83 Aligned_cols=126 Identities=13% Similarity=0.192 Sum_probs=82.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 001062 151 DILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTN 230 (1167)
Q Consensus 151 ~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~ 230 (1167)
.++.+.+..++..+.++.+.++...-..+.++++.++.-+......+-.....-.-++++..++..+.+.+ ......+
T Consensus 416 ~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~--~~ev~~a 493 (1426)
T PF14631_consen 416 QLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGN--SQEVDAA 493 (1426)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCc--HHHHHHH
Confidence 35556666677778889999999988899999999999999888888777744234567777777665544 2456789
Q ss_pred HHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 001062 231 IQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1167)
Q Consensus 231 ~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~ 282 (1167)
+.++..++...+..+.||-. .+..+++++.+- ....+|.. +..+..++
T Consensus 494 L~vL~~L~~~~~~~l~~fa~-~l~giLD~l~~L--s~~qiR~l-f~il~~La 541 (1426)
T PF14631_consen 494 LDVLCELAEKNPSELQPFAT-FLKGILDYLDNL--SLQQIRKL-FDILCTLA 541 (1426)
T ss_dssp HHHHHHHHHH-HHHHHHTHH-HHHGGGGGGGG----HHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHH-HHHHHHHHHhcC--CHHHHHHH-HHHHHHHh
Confidence 99999999988887777632 222333444331 23445543 44444443
No 271
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.52 E-value=4.9 Score=40.28 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=70.3
Q ss_pred cchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCc---hhh
Q 001062 964 KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKP---NLI 1040 (1167)
Q Consensus 964 ~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~~~p---~~~ 1040 (1167)
.|+|.+...+..-.-.-|.++...+.+++..+++..-+.|.++|..+-.+|+..|.+|...++.+|..+....+ ..+
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 67888888766444456788888888888888777777888888888889998899999999999988866544 577
Q ss_pred hchhhhhhHHH
Q 001062 1041 KGLLPELLPLL 1051 (1167)
Q Consensus 1041 ~~~l~~llp~L 1051 (1167)
.|++.++||.+
T Consensus 194 VPfYRQlLp~~ 204 (262)
T KOG3961|consen 194 VPFYRQLLPVL 204 (262)
T ss_pred hhHHHHhhhhh
Confidence 88889998865
No 272
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=78.50 E-value=38 Score=33.28 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=48.9
Q ss_pred CchHHHHHHHHHhcCCChhHHhHhHHHHHHHhcccc--cCCChHHHHHHHHHHHHhcC
Q 001062 1 MANLQMAAILEKITGKDKDFRYMATSDLLNELNKES--FKADADLEVKLSNIVVQQLD 56 (1167)
Q Consensus 1 ~~~~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~--~~~~~~~~~~i~~~ll~~L~ 56 (1167)
|.+.++..++..+.|..---|--|+.+|...+..+. ..+++.....+.+.|+.++.
T Consensus 1 M~~~~i~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~ 58 (155)
T PF11640_consen 1 MSTLDINSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIE 58 (155)
T ss_pred CccchHHHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHH
Confidence 899999999999999988889999999999998765 66777888888888887763
No 273
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.41 E-value=1.2e+02 Score=40.45 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHHHHHHHhhcCHH----HHHHHHHHHHHH---hhcC-------CCChHHHHHHHHHHHHHHHHhhhhhh
Q 001062 181 ANQASVRKKSVSCIASLASSLSDD----LLAKATIEVVRN---LRSK-------GAKPEMIRTNIQMVGALSRAVGYRFG 246 (1167)
Q Consensus 181 ~~~~~vrk~a~~~l~~l~~~~~~~----~~~~l~~~l~~~---l~~~-------~~~~~~r~~~~~~l~~l~~~~~~~~~ 246 (1167)
+.+..+|+++.+.+-.+....++. .|..+...++.- ++.+ .|....-..|++++..+....=+.+.
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~ 1264 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLN 1264 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566799999999988887766655 456655522221 1111 12122223344444444444444555
Q ss_pred cchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccc-ccHHHHHHHHHHhh
Q 001062 247 PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS-SYCDEILHLTLEYL 304 (1167)
Q Consensus 247 p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~-~~l~~ii~~~~~~l 304 (1167)
+-|+.++-.+..++.. ++..+......+|..++...+..|. ..+.++...+.+..
T Consensus 1265 ~lL~~~~~ll~~ci~~---~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1265 NLLPKVLGLLVGCIKQ---DNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAF 1320 (1514)
T ss_pred HHHHHHHHHHHHHhcC---cchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHH
Confidence 5677777777777777 6778888899999999998887776 35667766666554
No 274
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=78.06 E-value=1.2e+02 Score=33.95 Aligned_cols=194 Identities=9% Similarity=0.111 Sum_probs=113.8
Q ss_pred HHHHHHhhccCCccchhhHHHHHhhhccccCccc-chHH----------HHHhh-c-CCChhhHHHHHHHHHHHhccCCh
Q 001062 931 ILNLLFNHCESEEEGVRNVVAECLGKIALIEPAK-LVPA----------LKVRT-T-SSAAFTRATVVIAIKYSIVERPE 997 (1167)
Q Consensus 931 i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~~~~-~lp~----------l~~~~-~-~~~~~~R~~~~~~lk~~~~~~~~ 997 (1167)
++..|..++..-+-+.|+-++...+.+....+.. ..|. +...+ . -+++..-..+-..+|.++.+..-
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l 156 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESL 156 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHH
Confidence 3344444444445566777777777666544322 1122 11111 1 12344445555666666654321
Q ss_pred hhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHH---HHhhhccccceeeeeccCceeec
Q 001062 998 KIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLL---YDQTIVKKELIRTVDLGPFKHTV 1074 (1167)
Q Consensus 998 ~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~~l~~llp~L---~~~~~~~~~lir~v~~gp~k~~~ 1074 (1167)
+-.-.-.+++..|...++.++-+|-..|+.++..+...++.++..++..-.... |..+-.
T Consensus 157 ~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~----------------- 219 (335)
T PF08569_consen 157 AKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE----------------- 219 (335)
T ss_dssp HHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-----------------
T ss_pred HHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc-----------------
Confidence 100011234556778888999999999999999999888888877776544333 333322
Q ss_pred ccChhHHHHHHHHHHHHHhhccc-----c-CCcccchHHHHhcccCC-cchhHHHHHHHHHHHHh--hCchHHHHHH
Q 001062 1075 DDGLELRKAAFECVDTLLDSCLD-----Q-VNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLAD--KCPSAVLADF 1142 (1167)
Q Consensus 1075 d~gle~Rk~a~~~~~~ll~~~~~-----~-~~~~~~~~~~~~~gl~D-~~di~~l~~~~l~~l~~--~~p~~~~~~l 1142 (1167)
.++.=.|+-+...+..++-.-.. + ++-.+.+ ..+...|+| ...|+.-|+....-++. ++|..|..-|
T Consensus 220 s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nL-kl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL 295 (335)
T PF08569_consen 220 SSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENL-KLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDIL 295 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHH-HHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHH
T ss_pred CCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHH-HHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHH
Confidence 24455899999999988765321 1 3333444 577788999 77899999999888876 5777776544
No 275
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=78.05 E-value=21 Score=32.22 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCch-hHhhhhhhHHHHHHhcccC
Q 001062 418 WLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC-LADHIGSLIPGIEKSLNDK 479 (1167)
Q Consensus 418 ~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~-l~~~l~~l~~~l~~~l~d~ 479 (1167)
..+..+++.++..+...++.-.+.+|..++.+|..+.+.+|+. +..+...+++.....+.-.
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 3577888999999999998888999999999999999999998 6788899999998888744
No 276
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=77.86 E-value=4.7 Score=34.62 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=6.5
Q ss_pred CCCcchH---HHHHHHHHHHHHHhcCC
Q 001062 338 DEDASWK---VRRAAAKCLAALIVSRP 361 (1167)
Q Consensus 338 ddd~sw~---vR~aA~~~l~~li~~~~ 361 (1167)
++...|- -+.++..+....+.++|
T Consensus 38 ~de~p~p~fgea~~~~~~v~rYltSf~ 64 (101)
T PF09026_consen 38 EDEVPVPEFGEAMAYFTMVKRYLTSFP 64 (101)
T ss_dssp --------HHHHHHHHHHHHHHHCTS-
T ss_pred cccccchhHHHHHhhcchHhhhhhccc
Confidence 3444553 23344444444444443
No 277
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.38 E-value=11 Score=34.63 Aligned_cols=70 Identities=10% Similarity=0.117 Sum_probs=44.6
Q ss_pred HHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 001062 129 TPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1167)
Q Consensus 129 ~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1167)
+-.|.+.|..++ ++.+..-|+.=|+++++..+.--. -..-.....+|..++++++.||+.|+.|+..+..
T Consensus 45 lk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 45 LKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 344444443322 455666677778888888654221 1122346778888999999999999999987764
No 278
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=76.94 E-value=11 Score=32.66 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHH
Q 001062 141 MNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIAS 196 (1167)
Q Consensus 141 ~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~ 196 (1167)
.+.++|+-.++++..++...|..+..-|+.++..+-....+++..+-+.|.+++..
T Consensus 30 ~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 30 PSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred CcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 36899999999999999999999999999999999999888777888888888754
No 279
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=76.60 E-value=14 Score=35.40 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcC
Q 001062 43 LEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLN 95 (1167)
Q Consensus 43 ~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~ 95 (1167)
..+.+-+.++..|.+++++||..|.+||-. ++.+.+.++-+.|...+.+
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~----~k~~~l~pY~d~L~~Lldd 62 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLT----WKDPYLTPYKDNLENLLDD 62 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hCcHHHHhHHHHHHHHcCc
Confidence 456677788899999999999999999975 4445566666667666544
No 280
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=76.49 E-value=1.4e+02 Score=33.83 Aligned_cols=287 Identities=15% Similarity=0.092 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHhcCccccc----chhhhHHHHHHhhcCchhhHHHHHHHHHHhcCC-CCCch--hhHHHHHHHHHH
Q 001062 576 EVKECAISCMGLVISTFGDNLGA----ELPACLPVLVDRMGNEITRLTAVKAFAVIAASP-LHIDL--TCVLEHVIAELT 648 (1167)
Q Consensus 576 ~vr~~Ai~alg~l~~~~g~~l~~----~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~~-~~~~~--~~~~~~~l~~L~ 648 (1167)
-+-+.+.+.++.++......+.. ++...+..++++..+..++..+++++..+..-+ -+..| ..-+..+++.+.
T Consensus 129 ~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~ 208 (442)
T KOG2759|consen 129 FIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA 208 (442)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh
Confidence 34444666666665543333322 333344444444445567888999998877321 11000 111222333332
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhH--HHHHHHHhhhcCCCc-hhhHHHHHHHHHHHhhcccCC---Cchh
Q 001062 649 AFLRKANRALRQATLGTMNSLVVAYGDKIGASAY--EVIIVELSTLISDSD-LHMTALALELCCTLMADKRSS---PNVG 722 (1167)
Q Consensus 649 ~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~~d-~~~~~~al~~l~~l~~~~~~~---p~~~ 722 (1167)
-.+.+-.+...++-|+..+.-+.+. .+.+ -.+++.+...+..+- -.+....+.++..++..++.. ....
T Consensus 209 --s~~~~~QlQYqsifciWlLtFn~~~---ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~ 283 (442)
T KOG2759|consen 209 --STKCGFQLQYQSIFCIWLLTFNPHA---AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIA 283 (442)
T ss_pred --ccCcchhHHHHHHHHHHHhhcCHHH---HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHH
Confidence 2345677888899998877532211 0000 112333333332211 235556677777776652100 0001
Q ss_pred -hhhhhchHHHHHHHhhhccchhhhHHHHH-HHHHHHHhcc--CCChHHHHHHHhhcC-CCCCCCcchhhhhh--HHHHH
Q 001062 723 -LAVRNKVLPQALALIKSSLLQGQALVALQ-SFFAALVYSA--NTSFDTLLDSLLSSA-KPSPQSGGVAKQAM--YSIAQ 795 (1167)
Q Consensus 723 -~~~~~~~l~~l~~ll~~~~l~~~~l~~~~-~~~~~l~~~~--~~~~~~ll~~L~~~~-~~~~~~~~~~~~a~--~~~a~ 795 (1167)
..+...+++.+ +.+...--+..++..-. .+-+.+.... -..|+++..+|.... .-| |.+- .+-+ .++-
T Consensus 284 ~~mv~~~v~k~l-~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WS--P~Hk-~e~FW~eNa~- 358 (442)
T KOG2759|consen 284 SQMVLCKVLKTL-QSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWS--PVHK-SEKFWRENAD- 358 (442)
T ss_pred HHHHhcCchHHH-HHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCC--cccc-ccchHHHhHH-
Confidence 11222233332 33322212233332212 2222222221 235556666655432 111 1111 0001 1111
Q ss_pred HHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCC--Ccc--chHHHHHHhcCCChhhHHHH
Q 001062 796 CVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLS--SHE--HIENVIIESFQSPFEEIKSA 871 (1167)
Q Consensus 796 ~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~--~~~--~~~~~l~~~l~~~~e~vr~a 871 (1167)
+. .. .--.++..++..++. +.++..-+.||+=+|+..++.+-. .+. +..+.+++++++++++||-.
T Consensus 359 rl------ne--nnyellkiL~~lLe~--s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ 428 (442)
T KOG2759|consen 359 RL------NE--NNYELLKILIKLLET--SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYH 428 (442)
T ss_pred HH------hh--ccHHHHHHHHHHHhc--CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHH
Confidence 00 00 112566777777766 345666788888899999886432 122 24778999999999999999
Q ss_pred HHHHHHhhhhc
Q 001062 872 ASYALGNIAVG 882 (1167)
Q Consensus 872 aa~aLG~l~~~ 882 (1167)
|-.|+-++...
T Consensus 429 ALlavQ~lm~~ 439 (442)
T KOG2759|consen 429 ALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHhh
Confidence 98888776654
No 281
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=75.77 E-value=59 Score=31.82 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhc------CCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHH
Q 001062 185 SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRS------KGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLID 258 (1167)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~------~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~ 258 (1167)
.+-..++.|+-.++--+++..|.++.-.+..-... .......+.+....+..++.....-|.||...+++...+
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788888888888888888888777766533 222223344556788888888888899999999999888
Q ss_pred Hhhh
Q 001062 259 YCTS 262 (1167)
Q Consensus 259 ~l~~ 262 (1167)
.++.
T Consensus 116 ~L~~ 119 (153)
T PF08146_consen 116 LLKQ 119 (153)
T ss_pred HHHH
Confidence 8865
No 282
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=74.29 E-value=4.2 Score=29.67 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=30.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHH
Q 001062 351 KCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNT 393 (1167)
Q Consensus 351 ~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~ 393 (1167)
++++.++...|..+. .+.+...+.+++.|....||.++++.
T Consensus 1 k~l~~iv~~dp~ll~--~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 1 KALSSIVEKDPTLLD--SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred ChHHHHHhcCccccc--hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 367777777776543 33566777788999999999988765
No 283
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=74.10 E-value=22 Score=33.91 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=54.8
Q ss_pred HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCcc-chH-HHHHHHHHHhhcC-CCCHHHHHHHHHHHH
Q 001062 510 KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKP-YVQ-PIYNAIMSRLTNQ-DQDQEVKECAISCMG 586 (1167)
Q Consensus 510 ~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~-~l~-~l~~~ll~~l~~~-d~~~~vr~~Ai~alg 586 (1167)
...+..+.+.++.++++++..|+.++..++++.|+. |.. +.. ..+..+...+.+. ..+.+||.+++..+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~-------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP-------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH-------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 345667778888889999999999999999987663 211 111 2233333344332 567899999999999
Q ss_pred HHHHhcCc
Q 001062 587 LVISTFGD 594 (1167)
Q Consensus 587 ~l~~~~g~ 594 (1167)
.+...++.
T Consensus 109 ~W~~~f~~ 116 (133)
T cd03561 109 AWSESFGG 116 (133)
T ss_pred HHHHHhcC
Confidence 99888765
No 284
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=73.57 E-value=1.1e+02 Score=31.32 Aligned_cols=173 Identities=14% Similarity=0.172 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHH
Q 001062 270 LREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAA 349 (1167)
Q Consensus 270 ~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA 349 (1167)
.-+..+.++..+...++....|++..++..+-++-. +++ -..|+.+
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~-~~~---------------------------------f~~~~~~ 61 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRE-SED---------------------------------FSFRKEL 61 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHc-CCC---------------------------------cchHHHH
Confidence 445567777777777776666777777776655432 100 1457777
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHH
Q 001062 350 AKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVK 429 (1167)
Q Consensus 350 ~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~ 429 (1167)
-.++++.+...+- +.+-.++|.-+.. .+....-|.=.+- +++..- .++....+.+++=++.+
T Consensus 62 e~~lgaAi~amGp---e~vL~~lPLnl~~-~~~~~~~raWLLP----lLr~~i----------~~~~L~fF~~~~lPla~ 123 (198)
T PF08161_consen 62 EQVLGAAIRAMGP---EQVLSILPLNLDN-ADDSQPGRAWLLP----LLRDHI----------RNASLSFFVEEFLPLAR 123 (198)
T ss_pred HHHHHHHHHHCCH---HHHHHHCCCCccC-CCcCCcccchhHH----HHHHhc----------cCCChHHHHHHHHHHHH
Confidence 7888888887752 2233455532221 1111111211111 222210 01123455566656665
Q ss_pred HHHHHhcc---CChhhHHHHHHHH-HHHHHhc------CchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHh
Q 001062 430 SINRQLRE---KSIKTKVGAFSVL-RELVVVL------PDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 497 (1167)
Q Consensus 430 ~l~~~L~~---~~~~~r~~~~~~l-~~l~~~~------~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~ 497 (1167)
.+.+.-.+ ....+..-.++++ .++-..+ |..+...++.+...+.+.|.++ .++|...+..+..++
T Consensus 124 ~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~~L~~~L~~~---~~LR~~Ic~aL~~Lv 198 (198)
T PF08161_consen 124 RLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAKLLGNALYDQ---PDLRPIICQALRRLV 198 (198)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHC
Confidence 55554433 1111111111111 2222222 4456667788888888888875 467887777776653
No 285
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=71.71 E-value=1.6e+02 Score=39.01 Aligned_cols=162 Identities=14% Similarity=0.192 Sum_probs=86.0
Q ss_pred ccchHHHHHHhcCCChhhHHHHHHHHHHhhhh---cCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhH
Q 001062 850 HEHIENVIIESFQSPFEEIKSAASYALGNIAV---GNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDS 926 (1167)
Q Consensus 850 ~~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~---~~~~~~lp~l~~~l~~~~~~~~~~l~aLkei~~~~~~~~~~~l~~ 926 (1167)
..+++..++..|.+..|++-++.|.-|-++.- .|++..|-. +. -+.||-++..+.... ..+..
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE----~G--------sVtaLa~~al~~~kE--sTLKa 457 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRE----TG--------SVTALAACALRNKKE--STLKA 457 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHh----hh--------hHHHHHHHHHHhccc--chHHH
Confidence 45788889999999999998888887777653 233222221 11 123344443333221 13444
Q ss_pred HHHHHHHHHHhhccCCccch---hhHHHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccC--Chhhhh
Q 001062 927 SVEKILNLLFNHCESEEEGV---RNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVER--PEKIDE 1001 (1167)
Q Consensus 927 ~~~~i~~~L~~~~~~~~e~v---r~~aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~--~~~~~~ 1001 (1167)
.+..+|+ |-.+|.....++ -.+.+..+|.|.--.+..++-.+.. +-+++|++=+.. .+.|.+
T Consensus 458 vLSALWN-LSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEs------------aGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 458 VLSALWN-LSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIES------------AGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHHhh-hhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhc------------CccHHHHHHhHhhccchHHH
Confidence 5555554 444443222222 2333444454444334444433322 112333321111 124555
Q ss_pred hhh--HhHHHHHhhccCCChHHHHHHHHHHHHHHhcCch
Q 001062 1002 IIF--PEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPN 1038 (1167)
Q Consensus 1002 ~l~--~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~~~p~ 1038 (1167)
.|. .|+..+|++|...+..|-..+..+|+.+....|+
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~ 563 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPE 563 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHH
Confidence 555 4678888888887777777777888887666664
No 286
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=71.58 E-value=40 Score=32.49 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=51.0
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch--hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcc
Q 001062 211 IEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD 288 (1167)
Q Consensus 211 ~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l--~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~ 288 (1167)
..+.+.+++.+ ..+...++.++.++++.||..|...+ ...+.-+...+... .+.+|++-++..+..|...++.+
T Consensus 44 ral~krl~~~n--~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~--~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 44 RALKKRLLSKN--PNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTT--KNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHcCCC--hHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHccc--CCHHHHHHHHHHHHHHHHHhCCC
Confidence 33444555543 24556677777888888777665433 23444444444432 67889999999999999887654
Q ss_pred ccccHHHHHH
Q 001062 289 ISSYCDEILH 298 (1167)
Q Consensus 289 ~~~~l~~ii~ 298 (1167)
|.++.+..
T Consensus 120 --~~l~~i~~ 127 (142)
T cd03569 120 --PQLKYVVD 127 (142)
T ss_pred --cccHHHHH
Confidence 44443333
No 287
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.47 E-value=45 Score=32.26 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh--hhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccC
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1167)
...++.|.+.++.+++.+...++.++..++..+|..|...+ ..++..+.+.+.++ .+..++...+.++.......
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHh
Confidence 45677888889888999999999999999999988774432 35566677777765 46778888888877766543
No 288
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=71.29 E-value=67 Score=32.89 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhh
Q 001062 41 ADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLV 74 (1167)
Q Consensus 41 ~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~ 74 (1167)
+....+++..++++....-..||..|.+|+..+.
T Consensus 2 ~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 2 PELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788888888888888889999999998888
No 289
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=70.58 E-value=84 Score=39.10 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=66.6
Q ss_pred hhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhh-HhhHHHHHHHhc-CCchHHHHHHHHHHHHHHH
Q 001062 463 DHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYI-KALSSPVLAAVG-ERYYKVTAEALRVCGELVR 540 (1167)
Q Consensus 463 ~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l-~~ll~~l~~~l~-d~~~~v~~~al~~l~~l~~ 540 (1167)
||-..++..+-..+.. ...|..++.+|+.++...++ .+.... ..+++.+++++. |.+..+...|+.++--++-
T Consensus 66 P~~K~~~~~l~~~~~~----~~~Rl~~L~Ll~~~v~~qp~-~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVK----PSYRLQALTLLGHFVRSQPP-WLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred ccHHHHHHHHHHHHcC----chhHHHHHHHHHHHHhcCCc-hHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 3445556666666664 35699999999999987643 333333 478899999987 7777888888888877765
Q ss_pred hccCCccccCCCCccchHHHHHHHHHHh
Q 001062 541 VLRPSVEGLGFDFKPYVQPIYNAIMSRL 568 (1167)
Q Consensus 541 ~~~~~~~~~~~~~~~~l~~l~~~ll~~l 568 (1167)
.+ +..+.+|+..|+......+
T Consensus 141 ~i-------p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 141 HI-------PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cc-------cchhhHHHHHHHHHHHHHH
Confidence 44 3357889999988665444
No 290
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=70.50 E-value=96 Score=33.42 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHHHhc-------cchh-HHHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcC----HH---HH
Q 001062 143 TEIRCECLDILCDVLHKFG-------NLMS-NDHERLLSALLPQLSA-NQASVRKKSVSCIASLASSLS----DD---LL 206 (1167)
Q Consensus 143 ~~v~~~~~~~L~~l~~~~g-------~~l~-~~~~~l~~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~----~~---~~ 206 (1167)
|..-.++..+|+.++.... ..+. +....+-..++..|.. .+...=.++..++..++..+- .+ +-
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP 140 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELP 140 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhH
Confidence 5666677778888886542 2222 5556666666666543 222334445555666655432 11 23
Q ss_pred HHHHHHHHHHhhcCCCC--hHHHHHH--HHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCC-----CChhHHHHHHHH
Q 001062 207 AKATIEVVRNLRSKGAK--PEMIRTN--IQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASE-----NDEELREYSLQA 277 (1167)
Q Consensus 207 ~~l~~~l~~~l~~~~~~--~~~r~~~--~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e-----~~~e~re~al~~ 277 (1167)
..-+..++..+++.... .-.||.+ =.++.+|....|..-.+.++..|..+++....... ..+.-+--|+++
T Consensus 141 ~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNi 220 (255)
T PF10350_consen 141 EEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNI 220 (255)
T ss_pred HHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHH
Confidence 34455566666554111 1355543 45666777766654447788888888888765211 112345567888
Q ss_pred HHHHHHh--CCccccccHHHHHHHHHHhhc
Q 001062 278 LESFLLR--CPRDISSYCDEILHLTLEYLS 305 (1167)
Q Consensus 278 l~~l~~~--~~~~~~~~l~~ii~~~~~~l~ 305 (1167)
+..++.. ....+.+|+++.+.+.++.+.
T Consensus 221 Lr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 221 LRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 8777753 345677999999988887654
No 291
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=70.35 E-value=2.7e+02 Score=34.32 Aligned_cols=67 Identities=24% Similarity=0.192 Sum_probs=50.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhhh---hcChhhHHHH--HHHHHHHhcCCCcchhcHHHHHHHHHHhhc
Q 001062 48 SNIVVQQLDDVAGDVSGLAVKCLAPLVK---KVSEPRVVEM--TDKLCIKLLNGKDQHRDIASIALKTIIAEV 115 (1167)
Q Consensus 48 ~~~ll~~L~d~~~~Vr~~A~~~l~~l~~---~~~~~~~~~l--~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~ 115 (1167)
++.++.+|..+++.||..|.--+..+.. +++. .+..+ +++|+..+.+.+.+++..++-||++++-+-
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~-~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKS-RVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGK 306 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHH-HHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhccc
Confidence 5667778889999999999887776652 1221 23333 788888888899999999999999987443
No 292
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=70.16 E-value=22 Score=33.20 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhc
Q 001062 638 CVLEHVIAELTAFLR-KANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1167)
Q Consensus 638 ~~~~~~l~~L~~~L~-~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1167)
.+++.++|.+...+. +...+.|.+++..++.++...+ ++++.+..++..+....+..+. ...++.++..+++.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 467788888888888 6778999999999999998765 5666677777777665544333 46678888888876
No 293
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=68.70 E-value=7.9 Score=28.26 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=28.5
Q ss_pred HHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHH
Q 001062 153 LCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCI 194 (1167)
Q Consensus 153 L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l 194 (1167)
|+.+++..+..+ ..+.+.+.+...+.++++.||++|+..+
T Consensus 3 l~~iv~~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCcccc--chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 444454444444 3457888888889999999999998753
No 294
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.66 E-value=1.8e+02 Score=31.64 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=45.6
Q ss_pred CceeecccChhHHHHHHHHHHHHHhhcccc-----CCcccchHHHHhcccCCcchhHHHHHHHHHHHHhhCch
Q 001062 1069 PFKHTVDDGLELRKAAFECVDTLLDSCLDQ-----VNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPS 1136 (1167)
Q Consensus 1069 p~k~~~d~gle~Rk~a~~~~~~ll~~~~~~-----~~~~~~~~~~~~~gl~D~~di~~l~~~~l~~l~~~~p~ 1136 (1167)
|---+-|-...+||.-.|+++-|..+-.++ -.+.+++ .-+ .--.+++|++..|......+....|.
T Consensus 249 p~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpil-REl-hk~e~ded~~~ace~vvq~Lv~~e~~ 319 (353)
T KOG2973|consen 249 PEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPIL-REL-HKWEEDEDIREACEQVVQMLVRLEPE 319 (353)
T ss_pred CccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHH-HHH-hcCCCcHHHHHHHHHHHHHHHhcccc
Confidence 333455778899999999999998886544 2233333 111 22224789999999999999887765
No 295
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=68.30 E-value=40 Score=32.40 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh--hhhHHHHHHhcccCCCCch--HHHHHHHHHHHHhccC
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGIEKSLNDKSSTSN--LKIEALTFTRLVLSSH 500 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~l~~~l~~~l~d~~~~~~--~~~~al~~l~~l~~~~ 500 (1167)
...++.+.+.|+..++++...++.++..++..+|..|...+ ..++..+.+.+.++..... ++..++.++.......
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999998887774432 3456666666665543333 7888888877766544
No 296
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=67.99 E-value=15 Score=30.88 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=37.0
Q ss_pred HHHHHHh--cCCChhHHhHhHHHHHHHhccccc--------CCChHHHHHHHHHHHHhc
Q 001062 7 AAILEKI--TGKDKDFRYMATSDLLNELNKESF--------KADADLEVKLSNIVVQQL 55 (1167)
Q Consensus 7 ~~ll~~~--~~~d~d~R~mAl~dL~~~l~~~~~--------~~~~~~~~~i~~~ll~~L 55 (1167)
..+++-+ .+.|+.+|++|+--|++.+.+.|. .++++....|...+++.|
T Consensus 17 ~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 17 QYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 456899999999999999998876 677777777777777665
No 297
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=67.37 E-value=83 Score=32.22 Aligned_cols=151 Identities=16% Similarity=0.134 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCC---chHHHHHHHHHHHHhcc
Q 001062 423 EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSST---SNLKIEALTFTRLVLSS 499 (1167)
Q Consensus 423 ~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~---~~~~~~al~~l~~l~~~ 499 (1167)
.+..++..+.++..++-.++|..|..++..+... +..-.++++ =.+.+.+.+...... +.--.+++..+..++.
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~-~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~- 80 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHS-QDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD- 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc-
Confidence 3455666666666666678999999999888732 211112333 223444444432111 1222333333333332
Q ss_pred CCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHH
Q 001062 500 HSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKE 579 (1167)
Q Consensus 500 ~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~ 579 (1167)
+..|-..++..++..++.....+...+..++-+++..... -...+..++..++..+++...+..+--
T Consensus 81 -----~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~--------~~~~~~~v~~~l~~il~~~~~~dRv~v 147 (193)
T PF12612_consen 81 -----LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSD--------SPEELEQVLSDLLSILKENLRNDRVVV 147 (193)
T ss_pred -----cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhc--------CHHHHHHHHHHHHHHHHHhCCCCCeee
Confidence 1234455555555555544445555555555444432111 112344444444444443333333334
Q ss_pred HHHHHHHHHH
Q 001062 580 CAISCMGLVI 589 (1167)
Q Consensus 580 ~Ai~alg~l~ 589 (1167)
..+..+..++
T Consensus 148 P~l~tl~~Ll 157 (193)
T PF12612_consen 148 PLLKTLDFLL 157 (193)
T ss_pred cHHHHHHHHH
Confidence 4444444443
No 298
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=64.88 E-value=1.8e+02 Score=33.00 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=87.4
Q ss_pred HHHHHHHhc-CCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCC--------------hhHHHHHHHHH
Q 001062 6 MAAILEKIT-GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVA--------------GDVSGLAVKCL 70 (1167)
Q Consensus 6 i~~ll~~~~-~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~--------------~~Vr~~A~~~l 70 (1167)
+..+++.++ ..|=++=-.-+.-|..-|+...+-.+.. .+++...+.+.+.|++ .|++...+.+|
T Consensus 143 ~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~-I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~L 221 (356)
T PF03542_consen 143 FSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGAD-IDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVL 221 (356)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCc-HHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHH
Confidence 334444443 3444444566667777676544322222 6666666666654322 37888999999
Q ss_pred HHhhh---hcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHH
Q 001062 71 APLVK---KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRC 147 (1167)
Q Consensus 71 ~~l~~---~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~ 147 (1167)
..|+. ++......+++..+..++.++. -..+-.||.-+|-++|. .+.+.+|.++..|++-.+...+..
T Consensus 222 s~LisYh~~~~k~~qd~iV~~l~~GL~s~~---a~~CI~aLtic~~EmP~------s~~k~L~~iL~kLs~i~tt~~~Ai 292 (356)
T PF03542_consen 222 SALISYHSHFSKQEQDEIVRALESGLGSKT---AKPCIHALTICCYEMPD------SMKKLLPSILLKLSKISTTPNMAI 292 (356)
T ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHhhccchhhHH
Confidence 98885 4556667789999988886632 13455677777888776 345666777766665433455565
Q ss_pred HHHHHHHHHH
Q 001062 148 ECLDILCDVL 157 (1167)
Q Consensus 148 ~~~~~L~~l~ 157 (1167)
-.++.|+.+.
T Consensus 293 ~ILEFLs~L~ 302 (356)
T PF03542_consen 293 HILEFLSSLS 302 (356)
T ss_pred HHHHHHHHHh
Confidence 6667666654
No 299
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=64.84 E-value=41 Score=29.18 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=49.4
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALE 279 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~ 279 (1167)
+..+...+.+.. +.+.|+..+.++..+....+..++.-++.++..+-....+ +++++-..|+++++
T Consensus 19 L~Pf~~i~~~~~-~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~---~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 19 LKPFEYIMSNNP-SIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKD---NDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHhccC-cHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhC---CCccHHHHHHHHHh
Confidence 333333333332 3589999999999999999999988889999988877766 66777777777654
No 300
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=64.59 E-value=69 Score=30.50 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh--hhhHHHHHHhcccCCCCchHHHHHHHHHHHHhcc
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1167)
...++.+.+.++.+++.+...++.++..++..++..|...+ ..++..+.+.+.++.....++..++.++..-...
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 45667788889889999999999999999999888774432 3456677777776654334888888877766554
No 301
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=64.44 E-value=63 Score=31.25 Aligned_cols=76 Identities=12% Similarity=0.268 Sum_probs=55.2
Q ss_pred HHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HHHHHHHHHHhcc-CChhhHHH
Q 001062 369 EEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINRQLRE-KSIKTKVG 445 (1167)
Q Consensus 369 ~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~l~~~l~~~L~~-~~~~~r~~ 445 (1167)
...+..|.++++.++++|..-++..+.++++..|. .+...+ ...+..+.+.+.+ .+..++.-
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~---------------~fh~evask~Fl~eL~kl~~~~~~~~Vk~k 100 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGK---------------RFHQEVASRDFTQELKKLINDRVHPTVKEK 100 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH---------------HHHHHHhhHHHHHHHHHHhcccCCHHHHHH
Confidence 34556677889889999999999999999998762 222222 3455555666655 56789999
Q ss_pred HHHHHHHHHHhcCc
Q 001062 446 AFSVLRELVVVLPD 459 (1167)
Q Consensus 446 ~~~~l~~l~~~~~~ 459 (1167)
++.++..+...+++
T Consensus 101 il~li~~W~~~f~~ 114 (144)
T cd03568 101 LREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999887753
No 302
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=64.35 E-value=58 Score=32.44 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHHHhccchhH----------HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HHHHH
Q 001062 143 TEIRCECLDILCDVLHKFGNLMSN----------DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLAKA 209 (1167)
Q Consensus 143 ~~v~~~~~~~L~~l~~~~g~~l~~----------~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~~l 209 (1167)
...|.-+++++..+++..|..+.. ....+.+.+++.+.++++.+=.++++.+..+....... .++-+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888887776651 12455677777777766788888899888888766554 24556
Q ss_pred HHHHHHH-hhcCCCChHHHHHHHHHHHHHHH
Q 001062 210 TIEVVRN-LRSKGAKPEMIRTNIQMVGALSR 239 (1167)
Q Consensus 210 ~~~l~~~-l~~~~~~~~~r~~~~~~l~~l~~ 239 (1167)
++.++.. +.+++.....|..+++++..+++
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 6666663 33333234578888888888886
No 303
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.14 E-value=4.7e+02 Score=34.75 Aligned_cols=225 Identities=14% Similarity=0.187 Sum_probs=127.0
Q ss_pred HhcCCChhHHhHhHHHHHHHhcccc--cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhh----hhcChhhHHHH
Q 001062 12 KITGKDKDFRYMATSDLLNELNKES--FKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLV----KKVSEPRVVEM 85 (1167)
Q Consensus 12 ~~~~~d~d~R~mAl~dL~~~l~~~~--~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~----~~~~~~~~~~l 85 (1167)
-..++--++|.-.+..|.+.++... .-.+....-++++.+...-......+-+.+..|+--+. +.++.+.+..+
T Consensus 850 ~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~l 929 (1610)
T KOG1848|consen 850 DNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDL 929 (1610)
T ss_pred HhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHH
Confidence 3455667888888888998888632 22233333444443333333345677888888887655 35666677788
Q ss_pred HHHHHHHhcCCCcchhcHHHHHHHHH--H----hh-cC---Cc--------hh-HHH-----HHHHHHHHHHHhhhc--c
Q 001062 86 TDKLCIKLLNGKDQHRDIASIALKTI--I----AE-VT---TS--------SL-AQS-----IHTSLTPQLTKGITL--K 139 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~a~~aL~~~--~----~~-~~---~~--------~~-~~~-----~~~~i~p~Ll~~l~~--~ 139 (1167)
++.+.....+..+. .++..|+..+ + .+ +. .. .. ... .-..++=.|+..|.+ .
T Consensus 930 idtl~~fs~Qktdl--NISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 930 IDTLLVFSRQKTDL--NISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHhhhccc--cccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 88888776544333 3444444332 1 11 00 00 00 000 012233233333322 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhccchhH--HHHHHHHHHhhhhcCC------hH---HHHH----HHHHHHHHHHhhcCHH
Q 001062 140 DMNTEIRCECLDILCDVLHKFGNLMSN--DHERLLSALLPQLSAN------QA---SVRK----KSVSCIASLASSLSDD 204 (1167)
Q Consensus 140 ~~~~~v~~~~~~~L~~l~~~~g~~l~~--~~~~l~~~ll~~l~~~------~~---~vrk----~a~~~l~~l~~~~~~~ 204 (1167)
+...+||.+|+.++-.++...|..+.+ .+.-+...+++.|... ++ .++| ..+..++.++..++..
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 236889999999999999999988864 4444566666666521 12 3322 3555677777665543
Q ss_pred ------------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 205 ------------LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 205 ------------~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
.|..++..+...+.+.+ .+....++.++..+...
T Consensus 1088 fk~llnln~f~~vwe~ll~flkrl~s~~s--~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDIS--PEISLSAIKALQELLFS 1133 (1610)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcCC--hHhHHHHHHHHHHHHHH
Confidence 24556666666655543 35666777777766553
No 304
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.90 E-value=2.8e+02 Score=32.02 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh-hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 001062 209 ATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 209 l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~-~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~ 284 (1167)
+++.+++.++....+++..-..+..|-.+.+.- ..++---=...-.+++..+.+ ...|+|+.|-.++--+.++
T Consensus 591 ~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHD---kN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 591 LIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHD---KNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhc---ccHHHHHHHHHHHHHHHHh
Confidence 777788887766555565555566666666541 111110012233455666666 6788999888888766654
No 305
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=63.84 E-value=58 Score=31.01 Aligned_cols=77 Identities=12% Similarity=0.074 Sum_probs=54.8
Q ss_pred hhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccc--hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 001062 511 ALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPY--VQPIYNAIMSRLTNQDQDQEVKECAISCMGLV 588 (1167)
Q Consensus 511 ~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~--l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l 588 (1167)
..+..+.+.++.++++++..|+.++..++++.|.. |... -...++.+...+..+...+.|+.+++..+..+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~-------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK-------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 34667778888899999999999999999987662 2111 12344444455554444455999999999999
Q ss_pred HHhcCc
Q 001062 589 ISTFGD 594 (1167)
Q Consensus 589 ~~~~g~ 594 (1167)
...++.
T Consensus 110 ~~~f~~ 115 (133)
T smart00288 110 ADAFKN 115 (133)
T ss_pred HHHHcC
Confidence 887753
No 306
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=63.76 E-value=3e+02 Score=32.39 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHHHHhcCchhHhhhhhhHH-HHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHH
Q 001062 440 IKTKVGAFSVLRELVVVLPDCLADHIGSLIP-GIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLA 518 (1167)
Q Consensus 440 ~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~-~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~ 518 (1167)
.+.|..+..+|+.+....+..- +..++. .+..+|+..+ ..-|.-+.-.+...++......-.+..+.+.+.+..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~---~~~~~~~~L~~~L~S~s--a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESS---LQEIFQPLLLPYLNSPS--ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 4678889999999998875543 334443 5677776552 345666666777776654322222113556666666
Q ss_pred HhcCC---ch--------HHHHHHHHHHHHHHHh
Q 001062 519 AVGER---YY--------KVTAEALRVCGELVRV 541 (1167)
Q Consensus 519 ~l~d~---~~--------~v~~~al~~l~~l~~~ 541 (1167)
.++++ +| +++.++-..+..+..+
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~ 209 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDV 209 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66622 22 5666666666655543
No 307
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=62.58 E-value=1.3e+02 Score=27.97 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcc-----cC----CCCchHHHHHHHHH
Q 001062 423 EVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN-----DK----SSTSNLKIEALTFT 493 (1167)
Q Consensus 423 ~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~-----d~----~~~~~~~~~al~~l 493 (1167)
....++..+.+.|+++++.||.-++.++..++...++.|...+..=...|..+.+ |+ .....+|.+|-.++
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 3467888999999999999999999999999998877776555554554544433 11 12334777776666
Q ss_pred HHHhc
Q 001062 494 RLVLS 498 (1167)
Q Consensus 494 ~~l~~ 498 (1167)
..++.
T Consensus 115 ~~if~ 119 (122)
T cd03572 115 KAIFS 119 (122)
T ss_pred HHHhc
Confidence 66654
No 308
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=62.34 E-value=65 Score=29.69 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHHHHHhCCc---cccccHHHHHHHHHH
Q 001062 267 DEELREYSLQALESFLLRCPR---DISSYCDEILHLTLE 302 (1167)
Q Consensus 267 ~~e~re~al~~l~~l~~~~~~---~~~~~l~~ii~~~~~ 302 (1167)
+.+-.+.++...+.++++-+. +...|-.+++..++.
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~ 56 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLH 56 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhh
Confidence 577788999999999998877 777777777776654
No 309
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=61.64 E-value=1.5e+02 Score=29.06 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHhhhh
Q 001062 102 DIASIALKTIIAEVTTSS-LAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQL 179 (1167)
Q Consensus 102 ~~a~~aL~~~~~~~~~~~-~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~-~~~~l~~~ll~~l 179 (1167)
+.-+++|.++.+-+...- -+..+-...+.+....++.+..+..+...++.+|..++.+....... ..+--++.++..|
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 455677777766555420 12222233333333333433335788999999999998764432211 1122356677777
Q ss_pred cCChHHHHHHHHHHHHHHHhhcCHHH
Q 001062 180 SANQASVRKKSVSCIASLASSLSDDL 205 (1167)
Q Consensus 180 ~~~~~~vrk~a~~~l~~l~~~~~~~~ 205 (1167)
..++..++..|+..+..+-...++..
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCChHH
Confidence 77778899999888877766665543
No 310
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=61.41 E-value=2.3e+02 Score=30.20 Aligned_cols=199 Identities=14% Similarity=0.134 Sum_probs=93.7
Q ss_pred hcCCCChhHHHHHHHHHHHhhhhcChhh-HHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 001062 54 QLDDVAGDVSGLAVKCLAPLVKKVSEPR-VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQL 132 (1167)
Q Consensus 54 ~L~d~~~~Vr~~A~~~l~~l~~~~~~~~-~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~L 132 (1167)
+|+|+++.|.+.|+.|.+.+-+.+-... ...-.+.+|+ . +..+-..+
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~------------~--------------------~~~lK~~I 48 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWE------------S--------------------MNELKDRI 48 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHH------------H--------------------HHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH------------H--------------------HHHHHHHH
Confidence 4789999999999999997764321110 0111111111 1 12222333
Q ss_pred HHhhhccCCChhHHHHHHHHHHHHHHHhccchh--HHH-HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHH
Q 001062 133 TKGITLKDMNTEIRCECLDILCDVLHKFGNLMS--NDH-ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA 209 (1167)
Q Consensus 133 l~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~--~~~-~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l 209 (1167)
++.+.+. ++.+|..++..+..++-.....-. +.. ..--..=+..+...++.++.+.++.= -..+
T Consensus 49 l~~~~~~--~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~E-----------a~~l 115 (239)
T PF11935_consen 49 LSLWDSE--NPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAE-----------ANGL 115 (239)
T ss_dssp HHGGGSS--SHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHH-----------HHHH
T ss_pred HHHhcCC--CchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHH-----------HHHH
Confidence 3333332 578999999888887765433211 000 00000011122222333333322221 1234
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCC-Chh----HH---HHHHHHHHHH
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASEN-DEE----LR---EYSLQALESF 281 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~-~~e----~r---e~al~~l~~l 281 (1167)
+..++..+.++.-+.....+.+.++..|++.-|. |.+.+++.+.++-.+.++. -+. -. +-++..+-..
T Consensus 116 L~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~----~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~ 191 (239)
T PF11935_consen 116 LDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQ----FMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLH 191 (239)
T ss_dssp HHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGG----GHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHH
Confidence 5555666665553345666778888889887653 4577888877764431000 111 11 1133333333
Q ss_pred HHhCCccccccHHHHHHHHHH
Q 001062 282 LLRCPRDISSYCDEILHLTLE 302 (1167)
Q Consensus 282 ~~~~~~~~~~~l~~ii~~~~~ 302 (1167)
+..+|..- ||-+++.+.+.+
T Consensus 192 llk~~~~~-~~~~~i~~~L~~ 211 (239)
T PF11935_consen 192 LLKHPASS-PFQGRITQALTD 211 (239)
T ss_dssp HHTSGGGG-GGHHHHHHHHHH
T ss_pred HHCCCCch-hhHHHHHHHHHH
Confidence 33344322 888888887763
No 311
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.64 E-value=3.4e+02 Score=36.57 Aligned_cols=121 Identities=18% Similarity=0.235 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccccc-chhhhHHHHHHhhc---C--------c---hhhHHHHHHHHHHhcCCCCCch
Q 001062 572 DQDQEVKECAISCMGLVISTFGDNLGA-ELPACLPVLVDRMG---N--------E---ITRLTAVKAFAVIAASPLHIDL 636 (1167)
Q Consensus 572 d~~~~vr~~Ai~alg~l~~~~g~~l~~-~~~~~l~~L~~~L~---~--------e---~~r~~a~~al~~i~~~~~~~~~ 636 (1167)
+...+||-++..++=.++...|+.|.. ....++.++..... . + +|-..|++++-.+...- -..+
T Consensus 1185 ~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~-~~~l 1263 (1514)
T KOG0929|consen 1185 DYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQF-FKQL 1263 (1514)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 567899999999999999999988875 44555554432211 1 1 12233444444443211 1123
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhc
Q 001062 637 TCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLI 693 (1167)
Q Consensus 637 ~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l 693 (1167)
...++.++..+..+++++|..+-.....||-.++...+..++...++.+.+.+..+.
T Consensus 1264 ~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1264 NNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAF 1320 (1514)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHH
Confidence 566777888888888999999999999999999999888888877888877766554
No 312
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=60.55 E-value=1.1e+02 Score=29.48 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchh--hhHHH-HHHHhhhcCCCChhHHHHHHHHHHHHHHhCC
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG--DTVPV-LIDYCTSASENDEELREYSLQALESFLLRCP 286 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~--~lvp~-l~~~l~~~~e~~~e~re~al~~l~~l~~~~~ 286 (1167)
+..+.+.+++.. +..+...++.++.++++.||.+|...+. ..+.- +...+......+.+|++-++..+..|...++
T Consensus 40 ~ralkkRl~~~~-n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 40 VRALKKRLNGNK-NHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHccCC-CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 334445554322 2345666889999999999988764432 23433 4444432111345899999999999998876
Q ss_pred cc
Q 001062 287 RD 288 (1167)
Q Consensus 287 ~~ 288 (1167)
.+
T Consensus 119 ~~ 120 (141)
T cd03565 119 GS 120 (141)
T ss_pred CC
Confidence 54
No 313
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=60.43 E-value=9.2 Score=24.75 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhhcCcccchHHHHHHh
Q 001062 868 IKSAASYALGNIAVGNLSKFLPFILDQI 895 (1167)
Q Consensus 868 vr~aaa~aLG~l~~~~~~~~lp~l~~~l 895 (1167)
||.+|+.+||++.- ...+|.+++.+
T Consensus 1 VR~~Aa~aLg~igd---~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGD---PRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-S---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC---HHHHHHHHHHh
Confidence 68899999998753 45666666554
No 314
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=60.28 E-value=91 Score=30.07 Aligned_cols=75 Identities=9% Similarity=0.162 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhh--hhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccC
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADH--IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~--l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1167)
...++.+.+.++.+++.+..-++.+|..++..+|..|... -..++..+.+.+.+ ..+..++..++.++..-....
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHHh
Confidence 4567788888988899999999999999999988776432 23455556665554 335678888888777765543
No 315
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=60.27 E-value=3.1e+02 Score=31.35 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=59.9
Q ss_pred hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccc----ccHHHHHHHHHHhhccCCCCCCCCCCCCccccccc
Q 001062 250 GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS----SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEE 325 (1167)
Q Consensus 250 ~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~----~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~ 325 (1167)
|.++.++.+.+.. +|..+-..+.-++++|+++-..-+. .++++++.++.+- + +
T Consensus 314 p~~l~~~~sw~~S---~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~-----~---~------------ 370 (604)
T KOG4500|consen 314 PQFLDFLESWFRS---DDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQE-----K---D------------ 370 (604)
T ss_pred cHHHHHHHHHhcC---CchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh-----c---C------------
Confidence 4477777777776 6667777778888999876322111 3455555544321 0 0
Q ss_pred ccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCCh---hhH-HHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHH
Q 001062 326 EEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPE---MLS-KLYEEACPKLIDRFKEREENVKMDVFNTFIELVR 399 (1167)
Q Consensus 326 ~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~---~l~-~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~ 399 (1167)
.|++ -++..|+..+|+.+.-..|. .+. .+.+.++| .++-..+.|....+.++..++.
T Consensus 371 -----------vdgn--V~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~----~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 371 -----------VDGN--VERQHACLSALRNLMIPVSNKAHFAPAGVTEAILL----QLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred -----------CCcc--chhHHHHHHHHHhccccCCchhhccccchHHHHHH----HHHhcCCcchHHHHHHHHHHHh
Confidence 0011 25667888888887654432 111 12333333 3344556676666666655543
No 316
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=60.22 E-value=2.2e+02 Score=33.43 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhHHHHHH
Q 001062 229 TNIQMVGALSRAVGYRFGPHLGDTVPVLID 258 (1167)
Q Consensus 229 ~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~ 258 (1167)
..++.++.+....|+.+.||+|.+++++.+
T Consensus 181 ~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q 210 (851)
T KOG3723|consen 181 MLLRVLSAVYEKQPQPINPHLPELLALLSQ 210 (851)
T ss_pred HHHHHHHHHHhcCCCccCcccHHHHHHhcC
Confidence 457888999999999999999999999875
No 317
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=60.07 E-value=62 Score=30.15 Aligned_cols=69 Identities=17% Similarity=0.113 Sum_probs=45.9
Q ss_pred cchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHh---HHHHHh--hccC------CChHHHHHHHHHHHHH
Q 001062 964 KLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPE---ISSFLM--LIKD------QDRHVRRAAVLALSTF 1032 (1167)
Q Consensus 964 ~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~---i~~~l~--~l~d------~d~~vr~~a~~~L~~~ 1032 (1167)
.++-.|.+.+++.++.++.-++..++|++..+.+.+...+... |..+.. +-.| ....||..|-.++..+
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 3455677788888899999999999999999876555444433 333332 2112 3456888888866654
No 318
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=59.91 E-value=76 Score=31.32 Aligned_cols=127 Identities=12% Similarity=0.114 Sum_probs=65.9
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH-HHh
Q 001062 170 RLLSALLPQLSANQASVRKKSVSCIASLASS-------LSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS-RAV 241 (1167)
Q Consensus 170 ~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~-~~~ 241 (1167)
.|.+.++.+|+.+.. ++....-|+.++.+ +++.-+..+-..+...-. + + -..|+..|..+. ...
T Consensus 3 eikplLIsCL~~q~~--k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~--~---e-~~kA~~IF~~L~~~l~ 74 (174)
T PF04510_consen 3 EIKPLLISCLTMQET--KESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSE--N---E-PVKAFHIFICLPMPLY 74 (174)
T ss_pred chHHHHHHHHHhhcc--cHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhc--c---c-hHHHHHHHHhCCchhh
Confidence 345666666655432 22222223333222 233345666666655321 1 1 235777777777 556
Q ss_pred hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHH-HHHHHhCCccc-cccHHHHHHHHHHhh
Q 001062 242 GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQAL-ESFLLRCPRDI-SSYCDEILHLTLEYL 304 (1167)
Q Consensus 242 ~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l-~~l~~~~~~~~-~~~l~~ii~~~~~~l 304 (1167)
++.+.|++..+.|-+.+.+.+..+.+.+..-.|+.+. ..++...-... ..++..+++.+.+.+
T Consensus 75 ~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv 139 (174)
T PF04510_consen 75 GEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSV 139 (174)
T ss_pred hhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 7788999999999999999874323333333444332 22333222222 244555555544444
No 319
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=59.02 E-value=3.9e+02 Score=32.10 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=98.7
Q ss_pred hhHHhHhHHHHHHHhcccccCCChH----HHHHHHHHHHHhcCC-CChhHHHHHHHHHH----HhhhhcChhhHHHHHHH
Q 001062 18 KDFRYMATSDLLNELNKESFKADAD----LEVKLSNIVVQQLDD-VAGDVSGLAVKCLA----PLVKKVSEPRVVEMTDK 88 (1167)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~~~~~~~----~~~~i~~~ll~~L~d-~~~~Vr~~A~~~l~----~l~~~~~~~~~~~l~~~ 88 (1167)
|.-.|.|++-|-+.++..|--++.. ....++..++..-.| .-.+-|+...+-+. ++.++==+..|+.+++.
T Consensus 61 pqskyiALs~LdklIttkWkllp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpe 140 (1053)
T COG5101 61 PQSKYIALSLLDKLITTKWKLLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPE 140 (1053)
T ss_pred cchhhhHHHHHHHHHHhhhhhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHH
Confidence 4568999999999998876545543 334555666654433 22333343333322 33333234568999999
Q ss_pred HHHHhcCCCcchhcHHHHHHHHHHhhc---CCchh-------HHHHHHHHHHHHH----HhhhccCCChhHHHHHHHHHH
Q 001062 89 LCIKLLNGKDQHRDIASIALKTIIAEV---TTSSL-------AQSIHTSLTPQLT----KGITLKDMNTEIRCECLDILC 154 (1167)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~~~~~---~~~~~-------~~~~~~~i~p~Ll----~~l~~~~~~~~v~~~~~~~L~ 154 (1167)
|++.-. .+-++=+-...-|+.+-++. +.++. ...-++.-.|+++ +.|+... +++.-+..++.+-
T Consensus 141 li~~S~-~s~~vCeNnmivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~-~~SLi~ATLesll 218 (1053)
T COG5101 141 LINVSQ-ISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSR-DESLIEATLESLL 218 (1053)
T ss_pred HHhhcc-chHHHHhccHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Confidence 987533 22222333344455443332 11110 0111122223332 3333332 5667777777777
Q ss_pred HHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 001062 155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL 201 (1167)
Q Consensus 155 ~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~ 201 (1167)
..++..+.-. =+...+++.++..+.+ .+..|...+.|+..++...
T Consensus 219 rfl~wiPl~y-IfeTnIieLv~~~f~s-~pd~r~~tl~CLtEi~~L~ 263 (1053)
T COG5101 219 RFLEWIPLDY-IFETNIIELVLEHFNS-MPDTRVATLSCLTEIVDLG 263 (1053)
T ss_pred HHHhhCchhH-HHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHhhc
Confidence 7777655432 2456677777777633 4578889999999888654
No 320
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=58.52 E-value=5e+02 Score=33.29 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC
Q 001062 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1167)
Q Consensus 249 l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~ 285 (1167)
+.-++.++++.+.. ...-+|..+..+|+.|+...
T Consensus 587 ~~vlveiLLslls~---~s~llR~~~~~vf~~~~~~~ 620 (784)
T PF04931_consen 587 SEVLVEILLSLLSQ---PSALLRKVSEQVFEAFCPHL 620 (784)
T ss_pred HHHHHHHHHHHHhC---cchHHHHHHHHHHHHHHhhc
Confidence 56678888888877 66778999999999887654
No 321
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=58.42 E-value=3.3e+02 Score=31.11 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHhccCC-hhhHHHHHHHHHHHHHhcCchh---HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHH
Q 001062 419 LLKQEVSKIVKSINRQLREKS-IKTKVGAFSVLRELVVVLPDCL---ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTR 494 (1167)
Q Consensus 419 ~l~~~~~~l~~~l~~~L~~~~-~~~r~~~~~~l~~l~~~~~~~l---~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~ 494 (1167)
.|.+.=-.|++.+.+.|..++ +..-..|+.=+++.+++.|++- +.+= -=..+++.|+.. ++++|..|+.++.
T Consensus 359 rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~g--gKe~vM~Llnh~--d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 359 RLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYG--GKERVMNLLNHE--DPEVRYHALLAVQ 434 (442)
T ss_pred HHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhc--hHHHHHHHhcCC--CchHHHHHHHHHH
Confidence 344444578889999997765 4444455555788888887652 1111 123466777765 5789999999888
Q ss_pred HHhcc
Q 001062 495 LVLSS 499 (1167)
Q Consensus 495 ~l~~~ 499 (1167)
.++.+
T Consensus 435 ~lm~~ 439 (442)
T KOG2759|consen 435 KLMVH 439 (442)
T ss_pred HHHhh
Confidence 87653
No 322
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=58.01 E-value=1.2e+02 Score=29.96 Aligned_cols=147 Identities=17% Similarity=0.228 Sum_probs=77.0
Q ss_pred HHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh----HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH
Q 001062 128 LTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS----NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD 203 (1167)
Q Consensus 128 i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~----~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~ 203 (1167)
|-|.|+.-|.. .+++...+.+|+.++.+....+- ..|.++-+.++..-. .--.+|...+..+...+.+
T Consensus 4 ikplLIsCL~~----q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~----~e~~kA~~IF~~L~~~l~~ 75 (174)
T PF04510_consen 4 IKPLLISCLTM----QETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSE----NEPVKAFHIFICLPMPLYG 75 (174)
T ss_pred hHHHHHHHHHh----hcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhc----cchHHHHHHHHhCCchhhh
Confidence 44556555543 34666677788887777655442 456777766665432 2236788888888833345
Q ss_pred HH----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH-----hhhhhhcchhhhHHHHHHHhhhcCC-CCh-hHHH
Q 001062 204 DL----LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA-----VGYRFGPHLGDTVPVLIDYCTSASE-NDE-ELRE 272 (1167)
Q Consensus 204 ~~----~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~-----~~~~~~p~l~~lvp~l~~~l~~~~e-~~~-e~re 272 (1167)
+. ++.+++.+.+.+.+|.. .+...=.+.+-+.++-. .+.+ ...+..++|.+.+.+...=+ +.+ +.-.
T Consensus 76 efl~~~~~~L~~~~~~~L~~p~~-~d~~~W~LAl~~a~~~~Iql~e~~~~-~~~vk~L~~~mv~Sv~elV~~g~E~~~l~ 153 (174)
T PF04510_consen 76 EFLIPFMENLLPEISKVLLPPEE-VDVEDWVLALTGAVCMAIQLLESSMR-VDLVKELLPKMVKSVKELVERGMEVGFLR 153 (174)
T ss_pred hHHHHHHHHHHHHHHHHcCCchh-ccHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 43 55666677777776642 12221112222222221 1111 23456666666665543100 222 4444
Q ss_pred HHHHHHHHHHHh
Q 001062 273 YSLQALESFLLR 284 (1167)
Q Consensus 273 ~al~~l~~l~~~ 284 (1167)
.+++-++.++..
T Consensus 154 rgl~~~e~~v~~ 165 (174)
T PF04510_consen 154 RGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHH
Confidence 466666666653
No 323
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=57.99 E-value=52 Score=32.39 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=68.0
Q ss_pred HHHHhcC--CCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHH-HHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHH--
Q 001062 50 IVVQQLD--DVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLC-IKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI-- 124 (1167)
Q Consensus 50 ~ll~~L~--d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~-~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~-- 124 (1167)
.+++.|. ...+++|..|.=|+.++....+++ ..+.+...+ ..+.++..+..-.+..++..++-..|. ....+
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~d--v~~~l~~ 83 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPD--VGSELFL 83 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHH--HHHHHCC
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHH--HHHHHHh
Confidence 3455554 468899999999999987444433 333333333 333333323233344444443322221 11111
Q ss_pred HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHH--hccchhHHHHHHHHHHhhhhcC-ChHH-HHHHHHHHHHH
Q 001062 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK--FGNLMSNDHERLLSALLPQLSA-NQAS-VRKKSVSCIAS 196 (1167)
Q Consensus 125 ~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~--~g~~l~~~~~~l~~~ll~~l~~-~~~~-vrk~a~~~l~~ 196 (1167)
.+.+++.++..+.....+..+...++++|+.-+.. .-..+ ....+++|-...++ ++.. +|-+|..+|..
T Consensus 84 ~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I---~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 84 SEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI---SKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC---HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH---HHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 11233334433331222577888888888754321 11222 22334444444533 3344 78888777653
No 324
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=56.82 E-value=68 Score=29.86 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHhhhhcC--hhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhc
Q 001062 42 DLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVS--EPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEV 115 (1167)
Q Consensus 42 ~~~~~i~~~ll~~L~-d~~~~Vr~~A~~~l~~l~~~~~--~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~ 115 (1167)
+..+.+++.+..+|. ...+|.|-.+.-.++.|+.+.+ ++.+..+++.++........ ..-+.++|..++...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 357889999999999 8899999999999999998765 44444555555443332222 234556666666444
No 325
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=56.70 E-value=1.8e+02 Score=27.60 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHH-HHHHHHHHhhhcc-CCChhHHHHHHHHHHHHHHHh
Q 001062 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLK-DMNTEIRCECLDILCDVLHKF 160 (1167)
Q Consensus 83 ~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~-~i~p~Ll~~l~~~-~~~~~v~~~~~~~L~~l~~~~ 160 (1167)
...+..|-..+.++++.++-.|...|..++.+++.. +...+.. ..+..|.+.+..+ ..+..|+..+++++......|
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~-f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP-FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH-HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 444555555566666666677777778888887763 4333433 4444555544432 446789999999988888877
Q ss_pred ccc
Q 001062 161 GNL 163 (1167)
Q Consensus 161 g~~ 163 (1167)
+..
T Consensus 115 ~~~ 117 (133)
T cd03561 115 GGH 117 (133)
T ss_pred cCC
Confidence 753
No 326
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=56.33 E-value=1e+02 Score=29.64 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=53.7
Q ss_pred hhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccch--HHHHHHHHHHhhc----CCCCHHHHHHHHHH
Q 001062 511 ALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYV--QPIYNAIMSRLTN----QDQDQEVKECAISC 584 (1167)
Q Consensus 511 ~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l--~~l~~~ll~~l~~----~d~~~~vr~~Ai~a 584 (1167)
.-+..+.+.+++++++++..||.++..+++++|+. |...+ ...++.+...+.. ..++.+||++.+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~-------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~l 110 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGER-------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIEL 110 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH-------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHH
Confidence 34566778888999999999999999999998763 21111 2333333344432 24678999999999
Q ss_pred HHHHHHhcC
Q 001062 585 MGLVISTFG 593 (1167)
Q Consensus 585 lg~l~~~~g 593 (1167)
+-.+...++
T Consensus 111 i~~W~~~f~ 119 (139)
T cd03567 111 LYSWTLELP 119 (139)
T ss_pred HHHHHHHhc
Confidence 999887765
No 327
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.13 E-value=3.7e+02 Score=31.03 Aligned_cols=102 Identities=24% Similarity=0.236 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCch
Q 001062 642 HVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNV 721 (1167)
Q Consensus 642 ~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~ 721 (1167)
.++..|...|..++..+-......|..+.-.-.+... =.-..++..+..++...+..+++.++..+-.++-. .+--
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~-M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD---~glr 379 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIV-MEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD---SGLR 379 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHH-HHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc---cccc
Confidence 4555566666666655555555555554321111000 01123555566777667788888888877666543 1122
Q ss_pred hhhhhhchHHHHHHHhhhccchhhhH
Q 001062 722 GLAVRNKVLPQALALIKSSLLQGQAL 747 (1167)
Q Consensus 722 ~~~~~~~~l~~l~~ll~~~~l~~~~l 747 (1167)
...+...++|.+..++.+..-+|.++
T Consensus 380 ~KMv~~GllP~l~~ll~~d~~~~iA~ 405 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDTKHGIAL 405 (791)
T ss_pred HHHhhccchHHHHHHhCCcccchhhh
Confidence 23567789999999887665455443
No 328
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.63 E-value=5.8e+02 Score=33.14 Aligned_cols=212 Identities=16% Similarity=0.191 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHHHhcc-c--hh-HHHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHH--HHHHHHHHH
Q 001062 144 EIRCECLDILCDVLHKFGN-L--MS-NDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLA--KATIEVVRN 216 (1167)
Q Consensus 144 ~v~~~~~~~L~~l~~~~g~-~--l~-~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~--~l~~~l~~~ 216 (1167)
.+|..-...+..++..++. . +. ...+.++.++.. +++..+ .+|..|-.+.-.+..++-+..++ .-....-+.
T Consensus 170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~Lta-mSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQ 248 (1048)
T KOG2011|consen 170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTA-MSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQ 248 (1048)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3677888888888887655 2 22 234455555544 334433 77777665554444333222110 000000111
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHh-hh-cCCCChhHHHHHHHHHHHHHHhCCccccccHH
Q 001062 217 LRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYC-TS-ASENDEELREYSLQALESFLLRCPRDISSYCD 294 (1167)
Q Consensus 217 l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l-~~-~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~ 294 (1167)
+.-+..+....+..+..+...-.... +...-+..+|..++..+ .+ --|-++++|-.|++.++.|+..+|+.|-.
T Consensus 249 leaEr~k~r~~rarle~Ll~~r~etq-e~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--- 324 (1048)
T KOG2011|consen 249 LEAERNKSRGNRARLESLLMLRKETQ-EQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--- 324 (1048)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc---
Confidence 10000000111222222222211111 11112334444444332 11 01368899999999999999999975431
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCC--hhhHHHHHHHh
Q 001062 295 EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP--EMLSKLYEEAC 372 (1167)
Q Consensus 295 ~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~--~~l~~~~~~i~ 372 (1167)
...++|+ .|.-. |-.-.||....++|..+..... ..+..+.+..=
T Consensus 325 ---dsYLKYi----GWtLs--------------------------Dk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 325 ---DSYLKYI----GWTLS--------------------------DKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK 371 (1048)
T ss_pred ---chHHHHh----cceee--------------------------cCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 1122222 11100 1112799999999999988632 23333444433
Q ss_pred hHHHhhh-ccCChhHHHHHHHH
Q 001062 373 PKLIDRF-KEREENVKMDVFNT 393 (1167)
Q Consensus 373 p~L~~~l-~d~~~~vr~~~~~~ 393 (1167)
..+++.. +|.+..||...+..
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~ 393 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVL 393 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHH
Confidence 3444433 56666666544443
No 329
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=54.44 E-value=1.4e+02 Score=28.79 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhc-cCChhhHHHHHHHHHHHHHhcCchhHhhh--hhhHHH-HHHhcccCC-CCchHHHHHHHHHHHHhcc
Q 001062 425 SKIVKSINRQLR-EKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPG-IEKSLNDKS-STSNLKIEALTFTRLVLSS 499 (1167)
Q Consensus 425 ~~l~~~l~~~L~-~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~l~~~-l~~~l~d~~-~~~~~~~~al~~l~~l~~~ 499 (1167)
...+..+.+.++ ++++.+..-++.++..++..+|..|..++ ..++.. +.+.+.++. .+..++...+.++......
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 456677788886 45777777889999999999988775432 245554 566665443 2346788888877776654
Q ss_pred C
Q 001062 500 H 500 (1167)
Q Consensus 500 ~ 500 (1167)
.
T Consensus 117 f 117 (141)
T cd03565 117 F 117 (141)
T ss_pred h
Confidence 3
No 330
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=54.38 E-value=6.9e+02 Score=33.63 Aligned_cols=223 Identities=10% Similarity=0.099 Sum_probs=101.0
Q ss_pred chHHHHHHHHHHHHHHhcCChhhH--H--HHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchH
Q 001062 342 SWKVRRAAAKCLAALIVSRPEMLS--K--LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1167)
Q Consensus 342 sw~vR~aA~~~l~~li~~~~~~l~--~--~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~ 417 (1167)
+-.+||.|..+|-.|- |++.-. . -+..++..++..+.+.-+ ++.+.++.+++.. .|+.+....
T Consensus 364 ~~aLRrYa~MALTNLT--FGDv~NKa~LCs~rgfMeavVAQL~s~pe----eL~QV~AsvLRNL----SWRAD~nmK--- 430 (2195)
T KOG2122|consen 364 CNALRRYAGMALTNLT--FGDVANKATLCSQRGFMEAVVAQLISAPE----ELLQVYASVLRNL----SWRADSNMK--- 430 (2195)
T ss_pred HHHHHHHHHHHhhccc--cccccchhhhhhhhhHHHHHHHHHhcChH----HHHHHHHHHHHhc----cccccccHH---
Confidence 4478888888876552 221100 0 233455555555543333 3456667777754 355432100
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhH--hhhhhhHHHHHHhcccCCCCch--HHHHHHHHH
Q 001062 418 WLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLA--DHIGSLIPGIEKSLNDKSSTSN--LKIEALTFT 493 (1167)
Q Consensus 418 ~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~--~~l~~l~~~l~~~l~d~~~~~~--~~~~al~~l 493 (1167)
..|.+. -.+.....-.+..+++.+--+.+.+|+.|..++-..-. -.++..+..+...|.-+..... +-..+-..|
T Consensus 431 kvLrE~-GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGIL 509 (2195)
T KOG2122|consen 431 KVLRET-GSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGIL 509 (2195)
T ss_pred HHHHhh-hhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHH
Confidence 111111 11111122224444444445666677766554422211 1234445555555553311111 111222222
Q ss_pred ---HHHhccCCCCchhhhh--HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHH--HHHHHH
Q 001062 494 ---RLVLSSHSPPVFHPYI--KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPI--YNAIMS 566 (1167)
Q Consensus 494 ---~~l~~~~~~~~~~~~l--~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l--~~~ll~ 566 (1167)
..++.++ +...+.+ ..++..++.-|+....-|...+++++-+|... . ...+.++.+. ++.+..
T Consensus 510 RNVSS~IAt~--E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR--~------p~DQq~LwD~gAv~mLrn 579 (2195)
T KOG2122|consen 510 RNVSSLIATC--EDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR--S------PEDQQMLWDDGAVPMLRN 579 (2195)
T ss_pred HHHHhHhhcc--chHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC--C------HHHHHHHHhcccHHHHHH
Confidence 2333322 2232222 34677777777776667777777777776532 1 1123333322 223333
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHH
Q 001062 567 RLTNQDQDQEVKECAISCMGLVIS 590 (1167)
Q Consensus 567 ~l~~~d~~~~vr~~Ai~alg~l~~ 590 (1167)
.+.++ ...+-..+..+|-.++.
T Consensus 580 LIhSK--hkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 580 LIHSK--HKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHhhh--hhhhhhhHHHHHHHHhc
Confidence 33322 23455566666666653
No 331
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=54.21 E-value=3.8e+02 Score=30.52 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHhhhhcCh
Q 001062 43 LEVKLSNIVVQQLDDV----AGDVSGLAVKCLAPLVKKVSE 79 (1167)
Q Consensus 43 ~~~~i~~~ll~~L~d~----~~~Vr~~A~~~l~~l~~~~~~ 79 (1167)
....++..+.+.+.-+ +.+.-+....|+|.++.+++.
T Consensus 62 k~~~Y~g~~~k~i~p~l~~~~se~l~~~Y~~lg~lvk~c~~ 102 (373)
T PF14911_consen 62 KLLEYFGDFEKWIKPYLKSKSSEGLQRIYRVLGILVKHCSP 102 (373)
T ss_pred HHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHhcch
Confidence 3455667777777766 889999999999999987764
No 332
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.28 E-value=6.3e+02 Score=32.84 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHH-HHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhc
Q 001062 420 LKQEVSKIVKSIN-RQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLS 498 (1167)
Q Consensus 420 l~~~~~~l~~~l~-~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~ 498 (1167)
+.+.+..+++.++ ...++-.+..|..|++-|+.++...|+.|- -...+..+-..|+|+ +..||..++..+..+.+
T Consensus 280 i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl--~dsYLKYiGWtLsDk--~~~VRl~~lkaL~~L~e 355 (1048)
T KOG2011|consen 280 IESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL--SDSYLKYIGWTLSDK--NGTVRLRCLKALIKLYE 355 (1048)
T ss_pred HHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh--cchHHHHhcceeecC--ccHHHHHHHHHHHHHHh
Confidence 3344445554332 235666788999999999999999998772 123355677788898 46899999999999987
Q ss_pred cCCC-CchhhhhHhhHHHHHHHh-cCCchHHHHHHHHHHHHH
Q 001062 499 SHSP-PVFHPYIKALSSPVLAAV-GERYYKVTAEALRVCGEL 538 (1167)
Q Consensus 499 ~~~~-~~~~~~l~~ll~~l~~~l-~d~~~~v~~~al~~l~~l 538 (1167)
.-.- ..+..|...+=.-++.-. .|.+..|+..++..+-..
T Consensus 356 ~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 356 KDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 5211 122334455555555554 333445555555544433
No 333
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=52.85 E-value=1.6e+02 Score=36.71 Aligned_cols=115 Identities=10% Similarity=0.074 Sum_probs=72.7
Q ss_pred HhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChh-----hHHHHHHHHHHHhcC-C
Q 001062 23 MATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP-----RVVEMTDKLCIKLLN-G 96 (1167)
Q Consensus 23 mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~-----~~~~l~~~L~~~~~~-~ 96 (1167)
-|+....+.|...+-++ ..-...++.++.++|++.++++|..+..|+..++....+. ....+++++++...+ +
T Consensus 75 Iamea~~kLL~~C~eq~-n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~ 153 (819)
T KOG1877|consen 75 IAMEAYDKLLQACKEQI-NLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERG 153 (819)
T ss_pred hHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhccc
Confidence 45555666666544444 3445677888889999999999999999999998543321 246778888876654 2
Q ss_pred Cc----chhcHHHHHHHHHHhhcCCc----hhHHHH-HHHHHHHHHHhhhc
Q 001062 97 KD----QHRDIASIALKTIIAEVTTS----SLAQSI-HTSLTPQLTKGITL 138 (1167)
Q Consensus 97 ~~----~~r~~a~~aL~~~~~~~~~~----~~~~~~-~~~i~p~Ll~~l~~ 138 (1167)
.+ ..|-....||++++-....+ .++... ++.++|.++.-++.
T Consensus 154 ~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~ 204 (819)
T KOG1877|consen 154 DDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQS 204 (819)
T ss_pred chhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcc
Confidence 22 23445556666655433111 233333 77888887755544
No 334
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=52.81 E-value=17 Score=23.97 Aligned_cols=14 Identities=43% Similarity=0.285 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHH
Q 001062 343 WKVRRAAAKCLAAL 356 (1167)
Q Consensus 343 w~vR~aA~~~l~~l 356 (1167)
|.||+.|+.+|+.+
T Consensus 1 ~~vR~~aa~aLg~~ 14 (30)
T smart00567 1 PLVRHEAAFALGQL 14 (30)
T ss_pred CHHHHHHHHHHHHc
Confidence 78999999999976
No 335
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.53 E-value=3.6e+02 Score=29.79 Aligned_cols=280 Identities=10% Similarity=0.104 Sum_probs=135.5
Q ss_pred hcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHhhh---hcChhhHHHHHH
Q 001062 13 ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD--DVAGDVSGLAVKCLAPLVK---KVSEPRVVEMTD 87 (1167)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~--d~~~~Vr~~A~~~l~~l~~---~~~~~~~~~l~~ 87 (1167)
..+++.-+=+-+++.|.....+..--+|... +..++..|+ ..+.+|--..++|+..-.- ..+...++.=+.
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~g----~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAEA----MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhcccc----HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 4455555566677766655543211122222 333444444 3455666666665543321 111122222233
Q ss_pred HHHHHhc--CCCcchhcHHHHHHHHHHhhcCCc-------hhHHHHHHHH-HHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 001062 88 KLCIKLL--NGKDQHRDIASIALKTIIAEVTTS-------SLAQSIHTSL-TPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1167)
Q Consensus 88 ~L~~~~~--~~~~~~r~~a~~aL~~~~~~~~~~-------~~~~~~~~~i-~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~ 157 (1167)
.|+.+.. .++...-.-..-|++.+.-.=+.+ ..++.+.+.. +..|...++-.- ++++-.+.+.+|+.++
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~-dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI-DPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC-CccHHHHHHHHHHHHH
Confidence 3443322 233322233445666654322111 1233333333 444554444322 3566666666666665
Q ss_pred HHhc--cchhHHHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHH-----HH-HHHHHHHHHHhhcCCCChHHHH
Q 001062 158 HKFG--NLMSNDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDD-----LL-AKATIEVVRNLRSKGAKPEMIR 228 (1167)
Q Consensus 158 ~~~g--~~l~~~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~-----~~-~~l~~~l~~~l~~~~~~~~~r~ 228 (1167)
-+-. ..+. ..-=+..++.++.+.+ -.+|..+-+|++.+-...+.+ +. ....+.++..+.....++.+..
T Consensus 271 Vr~E~C~~I~--e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~ 348 (461)
T KOG4199|consen 271 VRDEICKSIA--ESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQ 348 (461)
T ss_pred HHHHHHHHHH--HccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHH
Confidence 4311 1110 0001345666666633 367766666666666554443 11 2234444544433233456777
Q ss_pred HHHHHHHHHHHHhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHH
Q 001062 229 TNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLT 300 (1167)
Q Consensus 229 ~~~~~l~~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~ 300 (1167)
.++.++..++-..|+.-..++ ...-...++.+.... ....+...+.+.+.+++.+..+.-.+++.-=++.+
T Consensus 349 ~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP-~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~L 420 (461)
T KOG4199|consen 349 EVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP-VAAQVQRNACNMIRNIVVRSAENRTILLANGIEKL 420 (461)
T ss_pred HHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHH
Confidence 888888888887776433333 234445566665411 22346777888898888876554445554334433
No 336
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=52.51 E-value=74 Score=29.30 Aligned_cols=74 Identities=9% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhh-----hc-CCCChhHHHHHHHHHH
Q 001062 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCT-----SA-SENDEELREYSLQALE 279 (1167)
Q Consensus 206 ~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~-----~~-~e~~~e~re~al~~l~ 279 (1167)
...++..+.+.+.+.++ ...-.++.++.++++.+|.+|..++..-. ++...+. .. .+.+..+|+.+++.+.
T Consensus 35 ~~~~~~~l~kRl~~~~~--~~~lkaL~lLe~lvkN~g~~f~~~i~~~~-~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 35 PKEAVDAIKKRINNKNP--HVVLKALTLLEYCVKNCGERFHQEVASND-FAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred HHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHccHHHHHHHHHhH-HHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 44566666666766544 56667777888888888777766553321 2222221 01 1146779999998888
Q ss_pred HHH
Q 001062 280 SFL 282 (1167)
Q Consensus 280 ~l~ 282 (1167)
.|.
T Consensus 112 ~w~ 114 (115)
T cd00197 112 LWA 114 (115)
T ss_pred HHh
Confidence 774
No 337
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=52.09 E-value=40 Score=31.06 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh---hhhcchhhhHHHHHHHhhhc-C-CCChhHHHHHHHHHHHHHHh
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY---RFGPHLGDTVPVLIDYCTSA-S-ENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~p~l~~lvp~l~~~l~~~-~-e~~~e~re~al~~l~~l~~~ 284 (1167)
+..++..+++.+.+.+..+.++.....+.+.-+. .+..|-.+++..++.. ++. + ++-++.| .+++..++..
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L-~~~f~~~~Fe~~R---~~alval~v~ 80 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHL-QNKFDIENFEELR---QNALVALVVA 80 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH----TT--TTTTHHH---HHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhc-cccCCccCHHHHH---HHHHHHHHHH
Confidence 3445556654432346678899999999997665 6666666677666653 331 1 1223454 4556667777
Q ss_pred CCccccccHHH
Q 001062 285 CPRDISSYCDE 295 (1167)
Q Consensus 285 ~~~~~~~~l~~ 295 (1167)
+|..+.||+-+
T Consensus 81 ~P~~~~~~L~~ 91 (114)
T PF10193_consen 81 APEKVAPYLTE 91 (114)
T ss_dssp SGGGHHH-HHH
T ss_pred hhHHHHHHHHH
Confidence 88777666543
No 338
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=51.62 E-value=77 Score=31.10 Aligned_cols=90 Identities=12% Similarity=0.137 Sum_probs=56.0
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhh------hhcChhhHHHHHHHHHHHhcCC--------Cc---ch-----h-cHHH
Q 001062 49 NIVVQQLDDVAGDVSGLAVKCLAPLV------KKVSEPRVVEMTDKLCIKLLNG--------KD---QH-----R-DIAS 105 (1167)
Q Consensus 49 ~~ll~~L~d~~~~Vr~~A~~~l~~l~------~~~~~~~~~~l~~~L~~~~~~~--------~~---~~-----r-~~a~ 105 (1167)
..++..|.+..-.=|+.|++-|..+. ..++...|..+++.|+..+..+ +. .. | .-++
T Consensus 7 ~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a 86 (155)
T PF11640_consen 7 NSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCA 86 (155)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHH
Confidence 34566677777777777777777776 4566778999999999877421 11 10 1 2456
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhcc
Q 001062 106 IALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLK 139 (1167)
Q Consensus 106 ~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~ 139 (1167)
.+|+.+++..-. .+....+..++..+.+.|..+
T Consensus 87 ~~lR~~ve~~~~-~~k~kt~~~Ll~hI~~~l~~~ 119 (155)
T PF11640_consen 87 SALRLFVEKSNS-RLKRKTVKALLDHITDLLPDP 119 (155)
T ss_pred HHHHHHHHHHHh-hcccchHHHHHHHHHHHhhCC
Confidence 777777765443 233445566666666666554
No 339
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=51.39 E-value=4.1e+02 Score=30.12 Aligned_cols=154 Identities=17% Similarity=0.158 Sum_probs=89.6
Q ss_pred CChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcC--------------ChHHHHHHHHHHHHHHHhh---cCH
Q 001062 141 MNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA--------------NQASVRKKSVSCIASLASS---LSD 203 (1167)
Q Consensus 141 ~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~--------------~~~~vrk~a~~~l~~l~~~---~~~ 203 (1167)
.+|+|-.-.+.-|...+.+-.-......+.+...+.+.+.+ .+..+......+|+.+..| +++
T Consensus 154 ~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls~LisYh~~~~k 233 (356)
T PF03542_consen 154 TDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLSALISYHSHFSK 233 (356)
T ss_pred CCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 36776666665555555543222222234444444433221 1235666677777777765 344
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 001062 204 DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1167)
Q Consensus 204 ~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~ 283 (1167)
..-++++..+..++.+. ..+.++.++...+...|..+.++++.++--+-+.... ..+.--.++.+..++
T Consensus 234 ~~qd~iV~~l~~GL~s~-----~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt-----~~~Ai~ILEFLs~L~- 302 (356)
T PF03542_consen 234 QEQDEIVRALESGLGSK-----TAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTT-----PNMAIHILEFLSSLS- 302 (356)
T ss_pred hHHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-----hhhHHHHHHHHHHHh-
Confidence 45677888888887652 2457888888888888988888888877666544332 223222344444333
Q ss_pred hCC-cc---cc-ccHHHHHHHHHHhhc
Q 001062 284 RCP-RD---IS-SYCDEILHLTLEYLS 305 (1167)
Q Consensus 284 ~~~-~~---~~-~~l~~ii~~~~~~l~ 305 (1167)
+.| .- |. .....++.++++|++
T Consensus 303 ~lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 303 RLPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred hCcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 456 32 32 345678888888874
No 340
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=51.30 E-value=22 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.086 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhh
Q 001062 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLV 74 (1167)
Q Consensus 47 i~~~ll~~L~d~~~~Vr~~A~~~l~~l~ 74 (1167)
.++.++++|.+++.+++..|+.+|..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5778888888999999999999998875
No 341
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=51.08 E-value=4.2e+02 Score=30.15 Aligned_cols=145 Identities=20% Similarity=0.243 Sum_probs=79.9
Q ss_pred CChhHHHHHHHHH-HHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchH
Q 001062 266 NDEELREYSLQAL-ESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWK 344 (1167)
Q Consensus 266 ~~~e~re~al~~l-~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~ 344 (1167)
.+.++|...++.+ .+++..-+....|++..++.++..+++.-..+.
T Consensus 200 ~~~~l~~~il~~i~~~fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~--------------------------------- 246 (373)
T PF14911_consen 200 RNEELRKFILQVIRSNFLEFKGSAPPPRLASVLAFLQQLLKRLQRQN--------------------------------- 246 (373)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHhcCccc---------------------------------
Confidence 3566777777766 344444444556888888888877775200000
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhh--ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHH
Q 001062 345 VRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF--KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1167)
Q Consensus 345 vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l--~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~ 422 (1167)
........+.++|.+++.+ -+.++.+|.-+.+.+..+++.+.-. +.. ...+
T Consensus 247 ----------------~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~-------~~~----~~~~ 299 (373)
T PF14911_consen 247 ----------------ENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVG-------SSG----EPRE 299 (373)
T ss_pred ----------------chhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccccc-------Ccc----hHHH
Confidence 0011123445566666663 3457889999999999888876411 011 1223
Q ss_pred HHHHHH-HHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhccc
Q 001062 423 EVSKIV-KSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLND 478 (1167)
Q Consensus 423 ~~~~l~-~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d 478 (1167)
.+.+.+ ..+.+.+.-. -...++++.+++...|+- +..++|.+.+.+.+
T Consensus 300 ~l~s~lrsfvqk~l~~~----t~~~f~~l~~vA~l~p~l----V~~Lip~i~q~l~~ 348 (373)
T PF14911_consen 300 QLTSVLRSFVQKYLAHY----TYQYFQFLEKVAELDPQL----VISLIPTIRQSLKD 348 (373)
T ss_pred HHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHH
Confidence 333333 2333333221 224577777777655543 56666666666654
No 342
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=50.99 E-value=1.4e+02 Score=28.56 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=51.0
Q ss_pred HHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HHHHHHHHHHhcc------CChh
Q 001062 370 EACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINRQLRE------KSIK 441 (1167)
Q Consensus 370 ~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~l~~~l~~~L~~------~~~~ 441 (1167)
..+-.+.++++.+++.|..-++..+.++++..|. .+...+ ...+..+.+.+.. .+.+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~---------------~fh~evas~~Fl~el~kl~~~k~~~~~~~~~ 102 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGE---------------RFHSEVGKFRFLNELIKLVSPKYLGSRTSEK 102 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH---------------HHHHHHHhHHHHHHHHHHhccccCCCCCCHH
Confidence 3455667889999999999999999999998763 222221 2333344444432 3567
Q ss_pred hHHHHHHHHHHHHHhcC
Q 001062 442 TKVGAFSVLRELVVVLP 458 (1167)
Q Consensus 442 ~r~~~~~~l~~l~~~~~ 458 (1167)
+|.-.+.++..+...++
T Consensus 103 Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 103 VKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 89999999999987765
No 343
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=50.71 E-value=1.2e+02 Score=29.95 Aligned_cols=130 Identities=19% Similarity=0.292 Sum_probs=70.8
Q ss_pred ChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHh-hccCCChHHHHHHHHHHHHHHhcCchhhhchh--hhhhHHHHH
Q 001062 977 AAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLM-LIKDQDRHVRRAAVLALSTFAHNKPNLIKGLL--PELLPLLYD 1053 (1167)
Q Consensus 977 ~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~-~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~~l--~~llp~L~~ 1053 (1167)
+++.|..+...+-..++. ..+.....+.+|+. .+.+.+.+-...++.++..+....|+.-...+ +.+++.+..
T Consensus 18 ~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~ 93 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLP 93 (157)
T ss_dssp SCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHH
Confidence 455665555444433321 12222334444554 33444455667777878888877777665555 346666655
Q ss_pred hhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhhcccc----CCcccchHHHHhcccCC--cch-hHHHHHHH
Q 001062 1054 QTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQ----VNPSSFIVPYLKSGLED--HYD-VKMPCHLI 1126 (1167)
Q Consensus 1054 ~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~~~~~----~~~~~~~~~~~~~gl~D--~~d-i~~l~~~~ 1126 (1167)
....+ .+.....+.+.|++. .+|.++ .-...++ +.+..+.+. ++. ||.++...
T Consensus 94 ~~~~~----------------~~~~~~~~~~lell~---aAc~d~~~r~~I~~~~~-~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 94 LASRK----------------SKDRKVQKAALELLS---AACIDKSCRTFISKNYV-SWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HHH-C----------------TS-HHHHHHHHHHHH---HHTTSHHHHHCCHHHCH-HHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHhcc----------------cCCHHHHHHHHHHHH---HHHccHHHHHHHHHHHH-HHHHHHHccccchHHHHHHHHHH
Confidence 54411 223345566666443 344332 3234455 777788854 333 89999999
Q ss_pred HHHH
Q 001062 1127 LSKL 1130 (1167)
Q Consensus 1127 l~~l 1130 (1167)
|.|+
T Consensus 154 L~Kl 157 (157)
T PF11701_consen 154 LCKL 157 (157)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8874
No 344
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=48.65 E-value=56 Score=31.95 Aligned_cols=76 Identities=11% Similarity=0.050 Sum_probs=52.2
Q ss_pred CChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHH
Q 001062 16 KDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCI 91 (1167)
Q Consensus 16 ~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~ 91 (1167)
.|+.+-.-|+.=|.+.+...+.....=..+--++.++..|.++++++|..|+..|..|..+.++.....+.+.|.+
T Consensus 72 ~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~~ 147 (160)
T PF11841_consen 72 MDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAETLSQ 147 (160)
T ss_pred ccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3667777777777776654221111111122378899999999999999999999988888877766666666653
No 345
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=48.63 E-value=22 Score=25.17 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=24.7
Q ss_pred chHHHHHHhcCCChhhHHHHHHHHHHhhh
Q 001062 852 HIENVIIESFQSPFEEIKSAASYALGNIA 880 (1167)
Q Consensus 852 ~~~~~l~~~l~~~~e~vr~aaa~aLG~l~ 880 (1167)
+..+.+++++.+++++++..|..+|++++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35677888888889999999999999875
No 346
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=48.61 E-value=5.9e+02 Score=31.13 Aligned_cols=157 Identities=22% Similarity=0.233 Sum_probs=86.8
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHH-----hhcCC---CChHH-HHHHHHHH
Q 001062 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---LAKATIEVVRN-----LRSKG---AKPEM-IRTNIQMV 234 (1167)
Q Consensus 167 ~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~l~~~-----l~~~~---~~~~~-r~~~~~~l 234 (1167)
+.+.+++.+...+++.+..+|=.++..++.++..++-.. |-++++.+... ++.+= ..++. -..++..+
T Consensus 243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ 322 (993)
T COG5234 243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFF 322 (993)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHH
Confidence 445666777766766677888889998888888776553 22244333322 22210 01222 11222222
Q ss_pred HHHHHHhhhhhhcchhhhHHHHHHHhhhcC-----CCChhHHHHHHHHHHHHHHhCCccccccHHH-HHHHHHHhhccCC
Q 001062 235 GALSRAVGYRFGPHLGDTVPVLIDYCTSAS-----ENDEELREYSLQALESFLLRCPRDISSYCDE-ILHLTLEYLSYDP 308 (1167)
Q Consensus 235 ~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~-----e~~~e~re~al~~l~~l~~~~~~~~~~~l~~-ii~~~~~~l~~dp 308 (1167)
+ ++...|-.++.-+ +.|++...+.... -+...+|+++.-.+.++.+...+.+.|-+.+ ++.++++-.-+||
T Consensus 323 a-la~~~~id~~d~~--i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDp 399 (993)
T COG5234 323 A-LAGAGLIDYSDCL--ILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDP 399 (993)
T ss_pred H-Hhhccccchhhhh--hhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCc
Confidence 2 5554444444332 5666666665521 0223578888666666665544444444443 3444444344555
Q ss_pred CCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhc
Q 001062 309 NFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS 359 (1167)
Q Consensus 309 ~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~ 359 (1167)
. -.+|++|..++-.++..
T Consensus 400 e---------------------------------l~vRr~a~Aal~E~iGR 417 (993)
T COG5234 400 E---------------------------------LNVRRAATAALFEVIGR 417 (993)
T ss_pred h---------------------------------hhhhhHHHHHHHHHhcc
Confidence 3 37999999998887765
No 347
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=48.25 E-value=1.9e+02 Score=32.44 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=36.5
Q ss_pred ChhHHHHHHHHHHHHHHHhccchh-----HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 001062 142 NTEIRCECLDILCDVLHKFGNLMS-----NDHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1167)
Q Consensus 142 ~~~v~~~~~~~L~~l~~~~g~~l~-----~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1167)
++.|...|+.++..+..+||..|. ..+...+..++.. ..++.|+++-...+...+.
T Consensus 58 dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~--~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 58 DPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIES--KAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred CcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhh--cccHHHHHHHHHHHHHHHH
Confidence 688999999999999999999764 2223333333332 4456777775555544443
No 348
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=47.62 E-value=1.8e+02 Score=28.89 Aligned_cols=98 Identities=18% Similarity=0.273 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHhcCChhhH----------HHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCC
Q 001062 343 WKVRRAAAKCLAALIVSRPEMLS----------KLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNN 412 (1167)
Q Consensus 343 w~vR~aA~~~l~~li~~~~~~l~----------~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~ 412 (1167)
++.|.-|...+..+++..++.+. -+-..+.|.+++.....+..+-..+++.+..++...+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~---------- 105 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR---------- 105 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------
Confidence 47788888888888887654333 2334456777766655557777777888888877654
Q ss_pred CCchHHHHHHHHHHHHHHHHH-HhccCC--hhhHHHHHHHHHHHHH
Q 001062 413 ELNPRWLLKQEVSKIVKSINR-QLREKS--IKTKVGAFSVLRELVV 455 (1167)
Q Consensus 413 ~~~p~~~l~~~~~~l~~~l~~-~L~~~~--~~~r~~~~~~l~~l~~ 455 (1167)
..+...+..++..+.. .+.+++ ...|..++.++..++.
T Consensus 106 -----~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 106 -----SHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred -----HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 3667777777777666 455443 3567788888888874
No 349
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=46.84 E-value=3.1e+02 Score=35.33 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhccC-C--hhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcc
Q 001062 419 LLKQEVSKIVKSINRQLREK-S--IKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN 477 (1167)
Q Consensus 419 ~l~~~~~~l~~~l~~~L~~~-~--~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~ 477 (1167)
-+..++.-|++.+..+.... . ..+-...+..|..|+...|.....++...+..+..-+.
T Consensus 465 Kl~~f~~vLlq~i~~la~~~~~~~~~~ld~L~~~L~~Laq~~p~~~a~~~r~~L~~~~~~~~ 526 (840)
T PF04147_consen 465 KLQVFFGVLLQHILYLASQDSPPPFEVLDSLIPHLYDLAQKYPEEAAECFREVLKEMQKRFR 526 (840)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666555443 1 22333444556666666666666666666655544443
No 350
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=46.06 E-value=3.1e+02 Score=32.34 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHH-----HHHHHHHhcCCCc-chhcHHHHHHHHHHhhcCCc
Q 001062 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM-----TDKLCIKLLNGKD-QHRDIASIALKTIIAEVTTS 118 (1167)
Q Consensus 45 ~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l-----~~~L~~~~~~~~~-~~r~~a~~aL~~~~~~~~~~ 118 (1167)
......++..+.++|+.-|..|.|.+..+.... ....++ +..|++.+.++.. ..+++-++.|+++++-+...
T Consensus 82 ~~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~--~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehg 159 (713)
T KOG2999|consen 82 SHYAKRIMEILTEGNNISKMEALKELDSLSLDP--TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHG 159 (713)
T ss_pred hHHHHHHHHHHhCCCcHHHHHHHHHHhhccccH--HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhc
Confidence 456777888888999999999999999887432 222222 4556666666654 35677788888887765542
Q ss_pred -----hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHhhhhcCChHHHHHHHHH
Q 001062 119 -----SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVS 192 (1167)
Q Consensus 119 -----~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~ 192 (1167)
.+...++..+.... +-+.-+.++-..|+.+|..+.-.....-. -..+..++.++..++..+..+...|+.
T Consensus 160 vvsW~~~~~~fV~~~a~~V----~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aia 235 (713)
T KOG2999|consen 160 VVSWESVSNDFVVSMASYV----NAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIA 235 (713)
T ss_pred eeeeeecccHHHHHHHHHH----hhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHH
Confidence 11112222222211 11111345666777777665533211000 011123445555555555555555666
Q ss_pred HHHHHHhhcCHH
Q 001062 193 CIASLASSLSDD 204 (1167)
Q Consensus 193 ~l~~l~~~~~~~ 204 (1167)
.+..+....++.
T Consensus 236 l~nal~~~a~~~ 247 (713)
T KOG2999|consen 236 LLNALFRKAPDD 247 (713)
T ss_pred HHHHHHhhCChH
Confidence 666655555544
No 351
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=46.00 E-value=4.8e+02 Score=32.81 Aligned_cols=125 Identities=13% Similarity=0.162 Sum_probs=68.1
Q ss_pred cCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCch
Q 001062 381 EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDC 460 (1167)
Q Consensus 381 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~ 460 (1167)
+|...|. -+..++..++.+.. +...-.....+..+.+.|.+.+.+.+..+...|.+++....++
T Consensus 68 ~r~~~v~-Iamea~~kLL~~C~---------------eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~ 131 (819)
T KOG1877|consen 68 ERFGSVK-IAMEAYDKLLQACK---------------EQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDG 131 (819)
T ss_pred ccCcchh-hHHHHHHHHHHHHh---------------hhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccC
Confidence 4444443 34567777776643 2333455667777888888888888888888888887544221
Q ss_pred --hHhhhhhhHHHHHHhcc---cCCCCchHHHHHHHHHHHHhccC-----CCCchhh-hhHhhHHHHHHHhc
Q 001062 461 --LADHIGSLIPGIEKSLN---DKSSTSNLKIEALTFTRLVLSSH-----SPPVFHP-YIKALSSPVLAAVG 521 (1167)
Q Consensus 461 --l~~~l~~l~~~l~~~l~---d~~~~~~~~~~al~~l~~l~~~~-----~~~~~~~-~l~~ll~~l~~~l~ 521 (1167)
.--.++.+++.+.+.-. +......+|.+.+..+..++--. .+....+ |.++++|.+...++
T Consensus 132 ~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~ 203 (819)
T KOG1877|consen 132 PSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQ 203 (819)
T ss_pred chhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhc
Confidence 11112333333333322 22223346667777666654211 1111122 46777777776554
No 352
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=45.89 E-value=1.4e+02 Score=27.37 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh
Q 001062 424 VSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI 465 (1167)
Q Consensus 424 ~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l 465 (1167)
...+++.+.+.+.+++|++..-++.++..++..++..|..++
T Consensus 35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i 76 (115)
T cd00197 35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEV 76 (115)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 467888899999999999999999999999999888775544
No 353
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.89 E-value=1e+03 Score=33.11 Aligned_cols=186 Identities=13% Similarity=0.105 Sum_probs=113.9
Q ss_pred HHHhcC-CChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCC--C-hhHHHHHHHHHHHhhhhcChhh---H
Q 001062 10 LEKITG-KDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV--A-GDVSGLAVKCLAPLVKKVSEPR---V 82 (1167)
Q Consensus 10 l~~~~~-~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~--~-~~Vr~~A~~~l~~l~~~~~~~~---~ 82 (1167)
..+..+ +++-.|..+...+.+.+.. ...++. ..++...-.-+.|. + +.-...|..|++.+-.+++... +
T Consensus 57 ~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~---~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~ 132 (2067)
T KOG1822|consen 57 ISRLTNGAGPPTRKLISVAIARLISN-GDSFSL---YSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGL 132 (2067)
T ss_pred HHHHccCCCchhHHHHHHHHHHHHhc-cchhhH---HHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchH
Confidence 334433 5677888888888777764 322322 22222222223333 2 2333466678887776655432 3
Q ss_pred HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhcc
Q 001062 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1167)
Q Consensus 83 ~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~ 162 (1167)
...+....+.........|.-.+..+...++++..........+.++-.....+.+. +..||..+..++..+...-+.
T Consensus 133 edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~~~~k~i~l~~k~~lld~--s~~v~iaa~rc~~a~s~~~~~ 210 (2067)
T KOG1822|consen 133 EDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAATATHKAIRLIAKNSLLDR--SFNVKIAAARCLKAFSNLGGP 210 (2067)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhh--hHHHHHHhHHHHHHHHhhcCc
Confidence 333443334333333345666667777778777754334444555555555555543 456888888888777766666
Q ss_pred ch-hHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 001062 163 LM-SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL 201 (1167)
Q Consensus 163 ~l-~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~ 201 (1167)
.+ ....+..-....+.+..+.+.+|-+-.++++.+....
T Consensus 211 ~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 211 GLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred cccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 55 4677778888888888888899999999999988765
No 354
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=44.64 E-value=2.4e+02 Score=25.80 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhh-HHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 001062 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDT-VPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 206 ~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~l-vp~l~~~l~~~~e~~~e~re~al~~l~~l~~~ 284 (1167)
-..++..+...++.... +.+-.++.++.++++.++..-..++... .|.+...... .++.+|+.....+..|-++
T Consensus 35 a~~iv~~i~~~i~~~~~--~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~---~~~~~r~kl~rl~~iW~~~ 109 (114)
T cd03562 35 AKEIVEIIEKHIKKCPP--EQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEK---VDEKTRKKLERLLNIWEER 109 (114)
T ss_pred HHHHHHHHHHHHHhCCc--ccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHccCC
Confidence 34566666666766543 5677899999999999876544433332 5555555555 6788898888887777554
No 355
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=44.48 E-value=31 Score=35.99 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=62.3
Q ss_pred HHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHHH
Q 001062 950 VAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLAL 1029 (1167)
Q Consensus 950 aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L 1029 (1167)
+..++|.+.... +.+.+.+.+-+.++++-.|..++..+-..+.+ +....++..+-..+.|++.-||.+.-.+|
T Consensus 107 ~~~~~~~~~~~~-~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L 179 (213)
T PF08713_consen 107 CSKLLGPLLKKH-PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWAL 179 (213)
T ss_dssp THHHHHHHHHHH-GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 455666664433 36678888888888998887776654333333 23334444455577899999999999999
Q ss_pred HHHHhcCchhhhchhhh
Q 001062 1030 STFAHNKPNLIKGLLPE 1046 (1167)
Q Consensus 1030 ~~~a~~~p~~~~~~l~~ 1046 (1167)
..+....|+.+.+++.+
T Consensus 180 ~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 180 REIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHH
Confidence 99999999988887765
No 356
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=43.66 E-value=4.3e+02 Score=28.11 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=40.7
Q ss_pred ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH---HHHHHHHHHHhccCChhhHHHHHHHHHHHHHh
Q 001062 380 KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV---SKIVKSINRQLREKSIKTKVGAFSVLRELVVV 456 (1167)
Q Consensus 380 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~---~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~ 456 (1167)
+|++..|...++.+.+.+.+..-. |- ... ...++.| ..+=..+...+.+.++.+|..|+.++..++..
T Consensus 3 ~d~d~~v~K~~I~~~~~iy~~~~~---~i----~~~--~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 3 NDEDPAVVKRAIQCSTSIYPLVFR---WI----CVN--PSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHH---HH----S----HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHH---HH----cCC--chHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 566677776776665554432110 00 000 1223333 44445777778888889999999999988876
Q ss_pred c
Q 001062 457 L 457 (1167)
Q Consensus 457 ~ 457 (1167)
.
T Consensus 74 q 74 (239)
T PF11935_consen 74 Q 74 (239)
T ss_dssp T
T ss_pred c
Confidence 5
No 357
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=42.36 E-value=5.5e+02 Score=29.01 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHHhc-cCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHH
Q 001062 483 SNLKIEALTFTRLVLS-SHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY 561 (1167)
Q Consensus 483 ~~~~~~al~~l~~l~~-~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 561 (1167)
...|++++.-+...+. .+-++-+.+-...+...+.++++.+..+-..-+-..+|.++--+++. ..-..+.....
T Consensus 74 AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~-----q~~ee~~~t~~ 148 (427)
T KOG2842|consen 74 AKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPG-----QEEEEWTKTLG 148 (427)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCc-----chhhHHHhccc
Confidence 3456666655444332 22234444555667778888887664433333333455555444542 12233444445
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHhc
Q 001062 562 NAIMSRLTNQDQDQEVKECAISCMGLVISTF 592 (1167)
Q Consensus 562 ~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~ 592 (1167)
+.....+...+.+...|..+..|+|..+..+
T Consensus 149 ~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a 179 (427)
T KOG2842|consen 149 PFLALILDDESASIKARSICATSLGTACLIA 179 (427)
T ss_pred hHHHHHhhccccchHHHHHHHHHHHHHHHHH
Confidence 5444444444555667777888888765443
No 358
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=37.68 E-value=5.2e+02 Score=35.46 Aligned_cols=144 Identities=16% Similarity=0.144 Sum_probs=73.1
Q ss_pred HhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 001062 53 QQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQL 132 (1167)
Q Consensus 53 ~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~L 132 (1167)
.+|.++++.|+.-|......+..........+++..|...+.+++....+.|...|..++...+. ...+. ...+-.+
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~--~l~~f-a~~l~gi 518 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPS--ELQPF-ATFLKGI 518 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HH--HHHHT-HHHHHGG
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHH--HHHHH-HHHHHHH
Confidence 34567888888888877777776664434456777777777666655556666666666654332 11111 1111222
Q ss_pred HHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 001062 133 TKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL 201 (1167)
Q Consensus 133 l~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~ 201 (1167)
+..+.+=. ...+ ...+++|+.++..-...-....+++.-.+-+.|.++....++..+-+.-.++.++
T Consensus 519 LD~l~~Ls-~~qi-R~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~l 585 (1426)
T PF14631_consen 519 LDYLDNLS-LQQI-RKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHL 585 (1426)
T ss_dssp GGGGGG---HHHH-HHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-HHHH-HHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHH
Confidence 22222210 1223 3446777766644332222445566666667777777766665544444444333
No 359
>PF14961 BROMI: Broad-minded protein
Probab=37.58 E-value=3.8e+02 Score=35.08 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=54.1
Q ss_pred HHHHHHHHhc-CCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh
Q 001062 5 QMAAILEKIT-GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE 79 (1167)
Q Consensus 5 ~i~~ll~~~~-~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~ 79 (1167)
.++.+++++. +--+++|..|+.-|++.=-.+- +..+....+...|..+|.||++.+...+.+..+.+...-+.
T Consensus 162 ~lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SDV--ls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl 235 (1296)
T PF14961_consen 162 QLQLIADKLDPGQPKEVRLEALQILCSAPPSDV--LSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPL 235 (1296)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhcCChhhc--cccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCch
Confidence 3456667763 3346899999999986543322 33467888899999999999999999999988887754443
No 360
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=36.02 E-value=4.3e+02 Score=27.23 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=15.8
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhhhhc
Q 001062 49 NIVVQQLDDVAGDVSGLAVKCLAPLVKKV 77 (1167)
Q Consensus 49 ~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~ 77 (1167)
..+..+..++..|.|..|+.++++.....
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~ 82 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKL 82 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG-
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhh
Confidence 33444455666666666666666554433
No 361
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=35.81 E-value=3.6e+02 Score=24.91 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=59.0
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhc-chhhhH
Q 001062 175 LLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGP-HLGDTV 253 (1167)
Q Consensus 175 ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p-~l~~lv 253 (1167)
.+..|+.++..++..+.-|+...-. -..++..+.+.+...+. +.+-..+.++..+++.+....++ |...+.
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~~------a~~Iv~~i~~~~~~~~~--~~kL~~LYlindIl~n~~~~~~~~f~~~~~ 76 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHASH------AKEIVELWEKYIKKAPP--PRKLPLLYLLDSIVQNSKRKYGSEFGDELG 76 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhCCc--cceehhHHhHHHHHHHHhhccHHHHHHHHH
Confidence 3455555666777766666654432 23466666666665543 46677888999999887554333 223333
Q ss_pred HHHHHHhhhcC-CCChhHHHHHHHHHHHHHHh
Q 001062 254 PVLIDYCTSAS-ENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 254 p~l~~~l~~~~-e~~~e~re~al~~l~~l~~~ 284 (1167)
|.+...+.... ..+++.|+.....+..|-.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~~ 108 (121)
T smart00582 77 PVFQDALRDVLGAANDETKKKIRRLLNIWEER 108 (121)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 33332222210 03467888888888888763
No 362
>PRK13689 hypothetical protein; Provisional
Probab=35.62 E-value=93 Score=25.69 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=32.8
Q ss_pred hhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhc
Q 001062 73 LVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEV 115 (1167)
Q Consensus 73 l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~ 115 (1167)
...++++++++.++..|+..+.+-+.. .|.+.++|++++.++
T Consensus 3 i~SKYsd~qvE~il~el~~VLeKH~Ap-~DLSLMvLGN~vTnl 44 (75)
T PRK13689 3 QQSKYSDEQVEQLLAELLAVLEKHKAP-TDLSLMVLGNMVTNL 44 (75)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHH
Confidence 346788899999999999988754443 689999999877553
No 363
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=34.84 E-value=1.1e+02 Score=25.63 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhh-cCHHHHH--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 187 RKKSVSCIASLASS-LSDDLLA--KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 187 rk~a~~~l~~l~~~-~~~~~~~--~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
.|.|+=|+++++.. .+-.+++ .+++.+++...+.+. ...|.+++.+++-++++
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v-~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV-LSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc-cchHHHHHHHHHHHhCC
Confidence 57889999999875 3334554 478888887765543 47899999999999986
No 364
>PF09462 Mus7: Mus7/MMS22 family; InterPro: IPR019021 Methyl methanesulphonate-sensitivity protein 22 (MMS22), along with MMS1, is involved in protection against replication-dependent DNA damage. MMS22 may act by restoring active replication forks, repairing unusual DNA structures, and/or preventing aberrant DNA rearrangement at arrested replication forks, including the repair of double-stranded DNA breaks created by the cleavage reaction of topoisomerase II [].
Probab=34.12 E-value=9.9e+02 Score=29.58 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccC
Q 001062 440 IKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK 479 (1167)
Q Consensus 440 ~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~ 479 (1167)
...|.-+..++..+++..+..+..+-..++...+..|..+
T Consensus 467 ~~~rkf~p~Fl~~ll~~d~~~f~~~~~~il~~wl~sLv~~ 506 (614)
T PF09462_consen 467 TQRRKFLPLFLANLLEHDPDDFSDCKESILELWLLSLVKR 506 (614)
T ss_pred HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhcc
Confidence 3466777778888888888888888888888887777765
No 365
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=34.04 E-value=92 Score=27.29 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHh
Q 001062 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQ 400 (1167)
Q Consensus 344 ~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~ 400 (1167)
..|.+|+.+|++++..+|-.+.+++..++..|-...++ ...++..+=.++.+.-+.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 45789999999999999866666777777665444454 456777776777776554
No 366
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=33.54 E-value=4.4e+02 Score=25.30 Aligned_cols=103 Identities=15% Similarity=0.221 Sum_probs=60.7
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh-h--hhcchhh
Q 001062 175 LLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY-R--FGPHLGD 251 (1167)
Q Consensus 175 ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~-~--~~p~l~~ 251 (1167)
+++.|+.+..+++|.|-.|+.. .-.++++++. |+..+.+++ -..|-..++++..++..+-. . ..||...
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~--~~~~edL~~c----Ile~le~~~--lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~~ 84 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN--RDMEEDLWSC----ILEQLEKEN--LNTRINIFYFIDSLCESSQKSKKYNYPYVSM 84 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc--cccHHHHHHH----HHHHHhccc--hhhHHHHHHHHHHHHHHHHhcccccchhHHH
Confidence 4556666667899999888887 4455555544 455555553 35688889999999886532 2 4556544
Q ss_pred h---HHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC
Q 001062 252 T---VPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1167)
Q Consensus 252 l---vp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~ 285 (1167)
+ +|-++......+...-.=+..+.+.|..|-..+
T Consensus 85 l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k~ 121 (139)
T PF12243_consen 85 LQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSKKK 121 (139)
T ss_pred HHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHcC
Confidence 4 444443332211011123456777777776653
No 367
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=32.87 E-value=79 Score=27.70 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC
Q 001062 441 KTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1167)
Q Consensus 441 ~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1167)
..|++++-.|++++..+|-.+.+++++++..+.+..+|. ..++.++=.+++.+-++|.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~---~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDP---QPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS----SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHHhCc
Confidence 357788889999999999998889999999988888753 4577777778888888774
No 368
>PHA02836 putative transmembrane protein; Provisional
Probab=32.47 E-value=55 Score=30.12 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhh-hhhcchhhhHHHHHHHhhh
Q 001062 226 MIRTNIQMVGALSRAVGY-RFGPHLGDTVPVLIDYCTS 262 (1167)
Q Consensus 226 ~r~~~~~~l~~l~~~~~~-~~~p~l~~lvp~l~~~l~~ 262 (1167)
..-+.+..+|.+++.+|+ ....|++.+||.+++.+.+
T Consensus 103 ~~LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~d 140 (153)
T PHA02836 103 SALTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDD 140 (153)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccc
Confidence 345678889999999886 6888999999999998865
No 369
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=32.36 E-value=4.6e+02 Score=25.11 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHH-HHHHHHHHHHhhhccCCChh--HHHHHHHHHHHHHH
Q 001062 82 VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI-HTSLTPQLTKGITLKDMNTE--IRCECLDILCDVLH 158 (1167)
Q Consensus 82 ~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~-~~~i~p~Ll~~l~~~~~~~~--v~~~~~~~L~~l~~ 158 (1167)
....+..|-..+.++++.+.-.|...|..++.+.+.. +...+ .+.++..|...+.++...+. |+..+++++.....
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~-f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPR-FHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH-HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH-HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4455555666666666666667777777788777652 22222 12344444444444432333 89999998888877
Q ss_pred Hhcc
Q 001062 159 KFGN 162 (1167)
Q Consensus 159 ~~g~ 162 (1167)
.|+.
T Consensus 119 ~f~~ 122 (140)
T PF00790_consen 119 AFKS 122 (140)
T ss_dssp HTTT
T ss_pred HHCC
Confidence 7743
No 370
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.21 E-value=2.7e+02 Score=32.81 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh--hhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccC
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1167)
+..+.+|.+.++++++++..-++.+|..++..|+..|..++ ..+++.+++....+.....+|..++.++..--.+.
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af 114 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAF 114 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHc
Confidence 58889999999999888999999999999999988875432 35566666666655335678888888877665543
No 371
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=30.90 E-value=4.1e+02 Score=26.54 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=38.6
Q ss_pred HHHhcCC--CChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHh
Q 001062 51 VVQQLDD--VAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIA 113 (1167)
Q Consensus 51 ll~~L~d--~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~ 113 (1167)
.+..|+. +++.||+-|+++|.. ++++.+..++++|.+.+.-+.......+-+-|+..+.
T Consensus 74 aLeLL~~~f~d~~VR~yAV~~L~~----~sd~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral~ 134 (171)
T cd00872 74 ALELLDCNFPDEHVREFAVRCLEK----LSDDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRALR 134 (171)
T ss_pred HHHHCCCcCCCHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHhc
Confidence 3455543 468899999998875 4577788888888888875443334455555554443
No 372
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=30.66 E-value=1.1e+03 Score=29.22 Aligned_cols=128 Identities=15% Similarity=0.111 Sum_probs=73.7
Q ss_pred HHHhhcCchhhHHHHHHHHHHhcCCCCCchhhHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCC--C
Q 001062 607 LVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLE-------HVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK--I 677 (1167)
Q Consensus 607 L~~~L~~e~~r~~a~~al~~i~~~~~~~~~~~~~~-------~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~--~ 677 (1167)
|+...++..|-+.+..+|.++...... ...|+. ..++.|..+|+..|..+-.++..+|..+....... +
T Consensus 526 Ll~~s~n~~TlEasaGaLQNltA~~~~--~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~li 603 (717)
T KOG1048|consen 526 LLALSKNDNTLEASAGALQNLTAGLWT--WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELI 603 (717)
T ss_pred HHHHhcchHHHHHhhhhHhhhhccCCc--chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhh
Confidence 334446667888999999988754321 122332 24578889999998888888888888887654321 3
Q ss_pred ChhhHHHHHHHHhhhcC--CCchhhHHHHHHHHHHHhhcccCCCchh-hhhhhchHHHHHHHhhh
Q 001062 678 GASAYEVIIVELSTLIS--DSDLHMTALALELCCTLMADKRSSPNVG-LAVRNKVLPQALALIKS 739 (1167)
Q Consensus 678 ~~~~~~~~l~~l~~~l~--~~d~~~~~~al~~l~~l~~~~~~~p~~~-~~~~~~~l~~l~~ll~~ 739 (1167)
....+.+++..+...-. ..+-++...+..++..++.. .+... ......-++.++.+.++
T Consensus 604 gk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~---~~~nAkdl~~~~g~~kL~~I~~s 665 (717)
T KOG1048|consen 604 GKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK---NVLNAKDLLEIKGIPKLRLISKS 665 (717)
T ss_pred hcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH---hHHHHHHHHhccChHHHHHHhcc
Confidence 33344444444433222 12234556666666666654 22211 12234456666665554
No 373
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=29.77 E-value=5.4e+02 Score=25.15 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcC
Q 001062 60 GDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLN 95 (1167)
Q Consensus 60 ~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~ 95 (1167)
.+|-..+.+|+-.++-++.+....++.-+|+.....
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~ 70 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNEATFRPLFLKLVDWATS 70 (153)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcc
Confidence 367788999999999999999999999999988754
No 374
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.20 E-value=1e+03 Score=28.23 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhh
Q 001062 641 EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHM 700 (1167)
Q Consensus 641 ~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~ 700 (1167)
+.++..|.+++..++.-.+.+++--|+.... | ...++++.-+.|+..++|.++
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afs--G-----t~~eevl~lL~Pi~~std~pi 501 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFS--G-----TQAEEVLELLQPIMFSTDSPI 501 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhc--C-----CcHHHHHHHhhhhhcCCCCcH
Confidence 4567778888877777677666666655433 2 235778888888887777744
No 375
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=29.10 E-value=1.9e+02 Score=29.49 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=58.2
Q ss_pred HHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHHH
Q 001062 950 VAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLAL 1029 (1167)
Q Consensus 950 aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L 1029 (1167)
+...+|.+....+ .+ +.+.+-+.+++.-.|..++..+-..+.+. ..+..++..+-..+.|++.-||.+...+|
T Consensus 93 ~~~~~~~~~~~~~-~~-~~~~~w~~s~~~~~rR~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~d~~~~Vqkav~w~L 165 (197)
T cd06561 93 CANLLGKLLYAEP-EL-DLLEEWAKSENEWVRRAAIVLLLRLIKKE-----TDFDLLLEIIERLLHDEEYFVQKAVGWAL 165 (197)
T ss_pred HHHHHHHHHhcCc-ch-HHHHHHHhCCcHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3334444433333 22 67778888888888766655544333331 12333444444466678888999999999
Q ss_pred HHHHhcCchhhhchhhhh
Q 001062 1030 STFAHNKPNLIKGLLPEL 1047 (1167)
Q Consensus 1030 ~~~a~~~p~~~~~~l~~l 1047 (1167)
..+....|+.+.+++.+.
T Consensus 166 ~~~~~~~~~~v~~~l~~~ 183 (197)
T cd06561 166 REYGKKDPERVIAFLEKN 183 (197)
T ss_pred HHHHhhCHHHHHHHHHHH
Confidence 999999999877776554
No 376
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.05 E-value=73 Score=29.42 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhh
Q 001062 43 LEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLV 74 (1167)
Q Consensus 43 ~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~ 74 (1167)
-..-.++.+++.|.|++++|...|++.|-...
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c 36 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEAC 36 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999887554
No 377
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=28.92 E-value=7.4e+02 Score=31.98 Aligned_cols=66 Identities=15% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHhh
Q 001062 8 AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL-DDVAGDVSGLAVKCLAPLV 74 (1167)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L-~d~~~~Vr~~A~~~l~~l~ 74 (1167)
..|-.|.+.-|-.|..++.-|+..-+...... +....--+..++..+ .+.+..+|.+|...++.|.
T Consensus 1816 ~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~k-eA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1816 TTLLTLLHSQPSMRARVLDVLYALSSNGQIGK-EALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHhcCcHHHH-HHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 34444556668899999999986554322110 111111112233222 4677889999999999887
No 378
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=28.88 E-value=1.4e+03 Score=29.71 Aligned_cols=120 Identities=15% Similarity=0.225 Sum_probs=66.3
Q ss_pred hhhhHhHHHHHhhccCCChH--HHHHHHHHHHHHHhcCchhhhchhh--hhhHHHHHhhhccccceeeeeccCceeeccc
Q 001062 1001 EIIFPEISSFLMLIKDQDRH--VRRAAVLALSTFAHNKPNLIKGLLP--ELLPLLYDQTIVKKELIRTVDLGPFKHTVDD 1076 (1167)
Q Consensus 1001 ~~l~~~i~~~l~~l~d~d~~--vr~~a~~~L~~~a~~~p~~~~~~l~--~llp~L~~~~~~~~~lir~v~~gp~k~~~d~ 1076 (1167)
.+|..++..+++.+..++.+ .-..-..++-.+..+.|.+. ++++ .++|.+.+...-+.
T Consensus 1999 ~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LA-Dqip~LGylPK~~~Am~~~n----------------- 2060 (2235)
T KOG1789|consen 1999 LFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLA-DQLPSLGYLPKFCTAMCLQN----------------- 2060 (2235)
T ss_pred HHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchh-hhCCCccchHHHHHHHHhcC-----------------
Confidence 46666777777777643322 11111222333455666643 2222 13454444332221
Q ss_pred ChhHHHHHHHHHHHHHhh--ccccCCcccchHHHHhcccCCcchhHHHHHHHHHHHHhhCchHHHH
Q 001062 1077 GLELRKAAFECVDTLLDS--CLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLA 1140 (1167)
Q Consensus 1077 gle~Rk~a~~~~~~ll~~--~~~~~~~~~~~~~~~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~~ 1140 (1167)
-.+-|+|.+.+-.|.++ |.+.+.-.+-+ +-+..+++...+.--+++-.|+|+..+.-+++..
T Consensus 2061 -~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i-~~~m~~mkK~~~~~GLA~EalkR~~~r~~~eLVA 2124 (2235)
T KOG1789|consen 2061 -TSAPRSAIRVLHELSENQFCCDAMAQLPCI-DGIMKSMKKQPSLMGLAAEALKRLMKRNTGELVA 2124 (2235)
T ss_pred -CcCcHHHHHHHHHHhhccHHHHHHhccccc-hhhHHHHHhcchHHHHHHHHHHHHHHHhHHHHHH
Confidence 11227788887777665 33222222223 3455777777778889999999999988887764
No 379
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=28.21 E-value=3.8e+02 Score=24.44 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCC
Q 001062 619 TAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDK 676 (1167)
Q Consensus 619 ~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~ 676 (1167)
..+..++.++... ..+...++..+...+++....-|...+-.+..++++++..
T Consensus 19 ~~I~~lt~~a~~~-----~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~ 71 (114)
T cd03562 19 PSIQTLTKLAIEN-----RKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRK 71 (114)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccc
Confidence 4555666555321 3566778888888888888888999999999999988754
No 380
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=28.11 E-value=1.4e+02 Score=35.00 Aligned_cols=111 Identities=9% Similarity=0.048 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh---hhH-HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchh
Q 001062 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE---PRV-VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSL 120 (1167)
Q Consensus 45 ~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~---~~~-~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~ 120 (1167)
..|++.|+++|++|...|...+--.+..++-.+.+ ..+ ..+++.|.+.+.++++..|.-+...|+.++-+...+.-
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 56788999999999999988888777777654443 222 35677787777777667777777888888877766422
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 001062 121 AQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1167)
Q Consensus 121 ~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~ 157 (1167)
...+.+.=+..++...+++ .+.|++.++.+|-.+.
T Consensus 510 f~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNft 544 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFT 544 (743)
T ss_pred hhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhcc
Confidence 2333333445666666665 5888888888776543
No 381
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.90 E-value=2.3e+02 Score=27.29 Aligned_cols=83 Identities=20% Similarity=0.281 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhh
Q 001062 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFG 246 (1167)
Q Consensus 167 ~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 246 (1167)
..+.+...++..|.++++.|++.|+.|+-..- ++.+.+.-+.+...+.+.. .| .-+..|.. .. ....+.
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k----~~~l~pY~d~L~~Lldd~~----fr-deL~~f~~-~~-~~~~I~ 82 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWK----DPYLTPYKDNLENLLDDKT----FR-DELTTFNL-SD-ESSVIE 82 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHhHHHHHHHHcCcch----HH-HHHHhhcc-cC-CcCCCC
Confidence 45677788888999999999999999987643 2333444444444444322 22 22222211 11 111132
Q ss_pred c-chhhhHHHHHHHh
Q 001062 247 P-HLGDTVPVLIDYC 260 (1167)
Q Consensus 247 p-~l~~lvp~l~~~l 260 (1167)
+ |=+.+||+++..+
T Consensus 83 ~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 83 EEHRPELMPVVLRIL 97 (141)
T ss_pred HHHHhHHHHHHHHHH
Confidence 2 5577777777665
No 382
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=26.94 E-value=1.2e+03 Score=28.31 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=53.9
Q ss_pred hhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhh-hhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 001062 464 HIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHP-YIKALSSPVLAAVGERYYKVTAEALRVCGELVRV 541 (1167)
Q Consensus 464 ~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~ 541 (1167)
.+.+++-.+...+.... ...+|...+.+++.+.+..-++..+. ..+.+.......+.|+++-+...|+.+++.+++.
T Consensus 476 ~i~qv~~~l~~l~~~~p-p~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 476 LIEQVLTELTSLFKSEP-PDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAER 553 (559)
T ss_pred HHHHHHHHHHHHHhhCC-CccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 46666666666664332 33589999999999887655555553 4444444444456899999999999999999864
No 383
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.67 E-value=33 Score=41.94 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=13.5
Q ss_pred CChhHHhHhHHHHHHHh
Q 001062 16 KDKDFRYMATSDLLNEL 32 (1167)
Q Consensus 16 ~d~d~R~mAl~dL~~~l 32 (1167)
+||.+|..||+.+.+-+
T Consensus 674 ~Dpei~~~AL~vIincV 690 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCV 690 (1516)
T ss_pred cCHHHHHHHHhhhheee
Confidence 48889999998887554
No 384
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=25.56 E-value=1.5e+02 Score=26.65 Aligned_cols=58 Identities=17% Similarity=0.402 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhhh---hhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCc
Q 001062 227 IRTNIQMVGALSRAVGY---RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1167)
Q Consensus 227 r~~~~~~l~~l~~~~~~---~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~ 287 (1167)
|...+.+++.++...+. .+.. +.. +|.+++++.. ++.+|-+||-|+.++..+++.+++
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~-~~G-i~liL~~c~i-D~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRE-LGG-IPLILSCCNI-DDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-cCC-hHHHHHhcCC-CcccHHHHHHHHHHHHHHHhCCHH
Confidence 44566777777765442 2332 233 8888888766 336788999999999999988764
No 385
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=24.75 E-value=1.3e+03 Score=27.97 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=49.4
Q ss_pred CccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcC-chhhHHHHHHHHHHhc
Q 001062 553 FKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGN-EITRLTAVKAFAVIAA 629 (1167)
Q Consensus 553 ~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~-e~~r~~a~~al~~i~~ 629 (1167)
+.--+++++..+.+.+... .++.+.++.+..+-.++.-.+-.+ -+.-.++..+.+++.+ ..+|..+++++.+++.
T Consensus 186 m~~EF~qIF~lc~qiLE~~-~~~SLi~ATLesllrfl~wiPl~y-IfeTnIieLv~~~f~s~pd~r~~tl~CLtEi~~ 261 (1053)
T COG5101 186 MKIEFPQIFGLCKQILEYS-RDESLIEATLESLLRFLEWIPLDY-IFETNIIELVLEHFNSMPDTRVATLSCLTEIVD 261 (1053)
T ss_pred HhhhHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHhhCchhH-HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 3445678888887777653 356666666555555553322111 1456778888887754 5689999999999984
No 386
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=24.65 E-value=1.3e+03 Score=28.08 Aligned_cols=93 Identities=19% Similarity=0.281 Sum_probs=55.8
Q ss_pred hhhhhHHHHHHhcccCCCCchHH------HHHHHHHHHHhc--cCCCCchhhhhHhhHHHHHHHhc----CCchHHHHHH
Q 001062 464 HIGSLIPGIEKSLNDKSSTSNLK------IEALTFTRLVLS--SHSPPVFHPYIKALSSPVLAAVG----ERYYKVTAEA 531 (1167)
Q Consensus 464 ~l~~l~~~l~~~l~d~~~~~~~~------~~al~~l~~l~~--~~~~~~~~~~l~~ll~~l~~~l~----d~~~~v~~~a 531 (1167)
|+.++--.+..+|..++..+... +-++.+=..++. +.....++|.+.++++.+..++. ..++..|-..
T Consensus 369 yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhc 448 (661)
T KOG2256|consen 369 YIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHC 448 (661)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHH
Confidence 56677667777777553211111 222333222332 33345667777777777777764 5688899999
Q ss_pred HHHHHHHHHhccCCccccCCCCccchHHHHHHH
Q 001062 532 LRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAI 564 (1167)
Q Consensus 532 l~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~l 564 (1167)
+..+..++++.| .|-|..+.++..+
T Consensus 449 ir~Li~Ls~ssg--------~fIPi~~ll~Eml 473 (661)
T KOG2256|consen 449 IRSLISLSRSSG--------TFIPLSPLLVEML 473 (661)
T ss_pred HHHHHHHHhhcC--------ceeecHHHHHHHH
Confidence 999988887643 3666665555544
No 387
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=24.40 E-value=1.5e+03 Score=28.65 Aligned_cols=232 Identities=13% Similarity=0.123 Sum_probs=106.9
Q ss_pred HHHHHHHHhcCCC-----ChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhh---cCC
Q 001062 46 KLSNIVVQQLDDV-----AGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE---VTT 117 (1167)
Q Consensus 46 ~i~~~ll~~L~d~-----~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~---~~~ 117 (1167)
.+.-.+..+|..| ++.+|..=-..+..+..+-.......+++.++..+.+++++.|.-|...++.+-.. +..
T Consensus 77 ~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~ 156 (727)
T PF12726_consen 77 ALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITD 156 (727)
T ss_pred hHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCch
Confidence 4555555665533 23345444444444443222221256667777777777777788887777775433 333
Q ss_pred chhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccc-hhH------HHHHHHHHHhhhhcCChHHHHHHH
Q 001062 118 SSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL-MSN------DHERLLSALLPQLSANQASVRKKS 190 (1167)
Q Consensus 118 ~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~-l~~------~~~~l~~~ll~~l~~~~~~vrk~a 190 (1167)
+++-..+.+.+...+... +....++..-..-=.-+..+++.+... +.. ..+ +...++..|.......-.-.
T Consensus 157 ~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~-i~~L~~~hL~~~~~~~l~~l 234 (727)
T PF12726_consen 157 EEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDP-IYRLLLNHLSSNLSPPLPIL 234 (727)
T ss_pred hhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccch-HHHHHHHHhhcccchhHHHH
Confidence 233334444444444333 222112221111112222233322221 111 222 56667777765523333556
Q ss_pred HHHHHHHHhhcCHHHHH--------HHHHHHH---------HHhhcCCCChHH--HHHHHHHHHHHHHHhh-hhhhcchh
Q 001062 191 VSCIASLASSLSDDLLA--------KATIEVV---------RNLRSKGAKPEM--IRTNIQMVGALSRAVG-YRFGPHLG 250 (1167)
Q Consensus 191 ~~~l~~l~~~~~~~~~~--------~l~~~l~---------~~l~~~~~~~~~--r~~~~~~l~~l~~~~~-~~~~p~l~ 250 (1167)
+.|+..+....+.++++ .+++.++ .....+...... ....+.=+..+.++.+ ..-.+-..
T Consensus 235 L~~l~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f~~~L~~~~~~~~~~~~~~~~~~~sWi~pf~~SL~~~~~~~~~~ 314 (727)
T PF12726_consen 235 LRCLSILLEKLGSDFWDAMGPISPQVILDQIFDNPAFKKLLLQSQEDEISESDDDLPDLLSWISPFLRSLSPSQRSQACR 314 (727)
T ss_pred HHHHHHHHHhCHHHHhcccCCCCHHHHHHHHhCChHHHHHHHhhccCCccccchhhHHHHHHHHHHHHHhcccchhhHHH
Confidence 67888888777776532 2222222 111111111011 1122333333344322 12244456
Q ss_pred hhHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 001062 251 DTVPVLIDYCTSASENDEELREYSLQALES 280 (1167)
Q Consensus 251 ~lvp~l~~~l~~~~e~~~e~re~al~~l~~ 280 (1167)
.++.+++..+++.. ..++.|.+|+.....
T Consensus 315 ~l~~~Ll~~~q~~~-~~~~~r~~c~~~~~~ 343 (727)
T PF12726_consen 315 KLLHFLLERLQHDR-FPDEARAACLRAGLD 343 (727)
T ss_pred HHHHHHHHHHhccc-cchhHHHHHHHHHHH
Confidence 67777777766621 233478777765443
No 388
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=24.24 E-value=1.5e+03 Score=28.62 Aligned_cols=135 Identities=15% Similarity=0.184 Sum_probs=77.2
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh---cCHHHHH-----HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 169 ERLLSALLPQLSANQASVRKKSVSCIASLASS---LSDDLLA-----KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 169 ~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~---~~~~~~~-----~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
..++|.+.-.+-++++..|+=|...+..+... +..+.|+ .+..++.. ++..+.+.......=..+..|.+.
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~-i~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYR-ISPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHH-hccCCCChhHHHHHHHHHHHHHHH
Confidence 55666777777778889999999999998764 4444332 23333332 233333222222222334444444
Q ss_pred hh-hhhhcchhh-----hHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccc----cccHHHHHHHHHHhhccCCCC
Q 001062 241 VG-YRFGPHLGD-----TVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDI----SSYCDEILHLTLEYLSYDPNF 310 (1167)
Q Consensus 241 ~~-~~~~p~l~~-----lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~----~~~l~~ii~~~~~~l~~dp~~ 310 (1167)
.+ +.|..++.. +...+++.+.. ..++.-...++++..+.+..|.+| .|+-|. .++..+..+|.|
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~---~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~---~ild~If~np~f 271 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSS---NLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQ---VILDQIFDNPAF 271 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhc---ccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHH---HHHHHHhCChHH
Confidence 33 344545444 56677777766 424555678999999999988764 344443 233444455644
No 389
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=24.22 E-value=1.1e+03 Score=26.98 Aligned_cols=276 Identities=11% Similarity=0.112 Sum_probs=131.1
Q ss_pred hhHHhHhHHHHHHHhcccccCCChHHHHHHHHHH----HHhcCCCChh----------H-------HHHHHHHHHHhh--
Q 001062 18 KDFRYMATSDLLNELNKESFKADADLEVKLSNIV----VQQLDDVAGD----------V-------SGLAVKCLAPLV-- 74 (1167)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~l----l~~L~d~~~~----------V-------r~~A~~~l~~l~-- 74 (1167)
+++.-.+++.|...+...+.++++.....++.+. ++.|.-+..+ + -+....-+=.++
T Consensus 83 keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~nifR~lpp~~n~~~~d~eedEp~le~awphLqlvye~~Lrf~~s 162 (457)
T KOG2085|consen 83 KEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSVNIFRTLPPSVNPTGFDYEEDEPVLEPAWPHLQLVYEFLLRFLES 162 (457)
T ss_pred chhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCcccCCCcCCccccCcccCCCchHHHHHHHHHHHHHhC
Confidence 4556789999999998887788776666666554 4444311110 1 111111111111
Q ss_pred hhcChhh----H-HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHhhhccCCChhHHHH
Q 001062 75 KKVSEPR----V-VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS-SLAQSIHTSLTPQLTKGITLKDMNTEIRCE 148 (1167)
Q Consensus 75 ~~~~~~~----~-~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~-~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~ 148 (1167)
+....+. + ..++-+|...+.+.++..|+.--+.|..+-..+... .+.+.-++.+ +++.+-..+... =..+
T Consensus 163 p~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNi---f~~FIyEte~hn-GIaE 238 (457)
T KOG2085|consen 163 PDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNI---FLRFIYETERHN-GIAE 238 (457)
T ss_pred cccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcch---hhhhcccccccC-CHHH
Confidence 1111111 1 234566777777777777887766666655543321 1222222222 223332222112 2457
Q ss_pred HHHHHHHHHHHhccchh-HHHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHH
Q 001062 149 CLDILCDVLHKFGNLMS-NDHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEM 226 (1167)
Q Consensus 149 ~~~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 226 (1167)
.+++||.++..|+--+. .+.--++..+++.-+-... .-.+.-..|+-++..-.+. ..+.++..+++..-..+. ..
T Consensus 239 LLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~k-l~~~VIrglLK~WP~tnS--~K 315 (457)
T KOG2085|consen 239 LLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPK-LTETVIRGLLKYWPKTNS--SK 315 (457)
T ss_pred HHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCcc-ccHHHHHHHHHhcCCCCC--cc
Confidence 88999999988877664 4444566666665332111 1122222333333322211 234455555554433222 22
Q ss_pred HHHHHHHHHHHHHHh-hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHH--HHHHHhCCccccccHHHHHHHHHHh
Q 001062 227 IRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQAL--ESFLLRCPRDISSYCDEILHLTLEY 303 (1167)
Q Consensus 227 r~~~~~~l~~l~~~~-~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l--~~l~~~~~~~~~~~l~~ii~~~~~~ 303 (1167)
.-..+.-++.|.+.. |..|..-...+...+-.++++ .+-.|.|-|+-.+ +.+..-+...-.-++|-+++.+-+.
T Consensus 316 EVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS---~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~ 392 (457)
T KOG2085|consen 316 EVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSS---PHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRN 392 (457)
T ss_pred eeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCC---hhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHH
Confidence 223455566666653 344543333333333344444 4555655554433 3333333333344555556655443
No 390
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=23.40 E-value=7.1e+02 Score=25.20 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=34.8
Q ss_pred HHhcCC--CChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHH
Q 001062 52 VQQLDD--VAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTII 112 (1167)
Q Consensus 52 l~~L~d--~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~ 112 (1167)
+..|+. +++.||.-|+++|.. ++++.+..++++|.+.+.-+.......+.+-|+...
T Consensus 81 L~LL~~~f~~~~VR~yAv~~L~~----~~d~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~ 139 (184)
T PF00613_consen 81 LELLSPNFPDPFVRQYAVRRLES----LSDEELLFYLPQLVQALRYEPYHDSPLARFLLRRAL 139 (184)
T ss_dssp HHCTSTT---HHHHHHHHHHHCT----S-HHHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHheeccccccHHHHHHHHHHH
Confidence 455543 357889999888754 567778888888888886443333445555555443
No 391
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.26 E-value=8.1e+02 Score=30.45 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChh
Q 001062 362 EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIK 441 (1167)
Q Consensus 362 ~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~ 441 (1167)
+.|..+|..++.+|...-+|.-+.|+..++.++..++..-. ++-..|+..+..-|.++..+
T Consensus 296 ~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kP-------------------EqE~~LL~~lVNKlGDpqnK 356 (988)
T KOG2038|consen 296 HELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKP-------------------EQENNLLVLLVNKLGDPQNK 356 (988)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCc-------------------HHHHHHHHHHHHhcCCcchh
Q ss_pred hHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHh
Q 001062 442 TKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAV 520 (1167)
Q Consensus 442 ~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l 520 (1167)
+-.-+-..|..|-..+|.. =..++..|.+.+--++.+..-+.-|+.+|..+.-+|....+..-+-.++=.+.+.+
T Consensus 357 iaskAsylL~~L~~~HPnM----K~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l 431 (988)
T KOG2038|consen 357 IASKASYLLEGLLAKHPNM----KIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTL 431 (988)
T ss_pred hhhhHHHHHHHHHhhCCcc----eeehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHH
No 392
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=23.25 E-value=1e+03 Score=26.24 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=73.1
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHhcCch----hHhhhhhhHHH-HHHhcccCCCCchHHHHHHHHHHHHhc-cCCC
Q 001062 429 KSINRQLREKSIKTKVGAFSVLRELVVVLPDC----LADHIGSLIPG-IEKSLNDKSSTSNLKIEALTFTRLVLS-SHSP 502 (1167)
Q Consensus 429 ~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~----l~~~l~~l~~~-l~~~l~d~~~~~~~~~~al~~l~~l~~-~~~~ 502 (1167)
...+.....++-.+...|++++..+...+... +..+...+++. ..+.++..+ --.+-.++.+++.++- .+..
T Consensus 169 ~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N--yvtkrqs~kllg~llldr~N~ 246 (342)
T KOG1566|consen 169 EKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN--YVTKRQSLKLLGELLLDRSNS 246 (342)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc--eehHHHHHHhHHHHHhCCCcH
Confidence 34445555556666677888888887766332 34455555555 445555443 2356677888888764 3333
Q ss_pred CchhhhhH--hhHHHHHHHhcCCchHHHHHHHHHHHHHHHhc
Q 001062 503 PVFHPYIK--ALSSPVLAAVGERYYKVTAEALRVCGELVRVL 542 (1167)
Q Consensus 503 ~~~~~~l~--~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~ 542 (1167)
..+..|+. .=+..+...+.|++..++.+|+.++--++...
T Consensus 247 ~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 247 AVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 34556775 55677888889999999999999988777653
No 393
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=23.24 E-value=1.7e+03 Score=28.62 Aligned_cols=90 Identities=9% Similarity=0.086 Sum_probs=52.1
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch
Q 001062 172 LSALLPQLSANQASVRKKSVSCIASLAS--SLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL 249 (1167)
Q Consensus 172 ~~~ll~~l~~~~~~vrk~a~~~l~~l~~--~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l 249 (1167)
+..+.+.|...+...+.+|.+-+..... ...+++|-.....+...+.-... ...|-..+|.-..+.+...++++|++
T Consensus 46 mivIvKnLqKRDivTK~rALqDLiq~nD~sQF~NeqFLna~avlfprLsIev~-~~~rl~~~qf~s~L~~~l~KKi~k~l 124 (1525)
T COG5219 46 MIVIVKNLQKRDIVTKCRALQDLIQWNDPSQFDNEQFLNALAVLFPRLSIEVE-MNPRLEGLQFDSRLYEILSKKIGKRL 124 (1525)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhccCHhhhcHHHHHHHHHHHhhheeeeee-eccchhhhhhHHHHHHHHHHHHHHHH
Confidence 3445555655566778888877766551 12222222223333333321211 13566778888888888888899998
Q ss_pred hhhHHHHHHHhhh
Q 001062 250 GDTVPVLIDYCTS 262 (1167)
Q Consensus 250 ~~lvp~l~~~l~~ 262 (1167)
...+|..+-.+.+
T Consensus 125 k~~i~~~llg~~d 137 (1525)
T COG5219 125 KKTILRGLLGLKD 137 (1525)
T ss_pred HhhhhHHHHhhcc
Confidence 8776666544443
No 394
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=22.84 E-value=1.4e+03 Score=27.80 Aligned_cols=58 Identities=7% Similarity=0.192 Sum_probs=28.5
Q ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChH--------------HHHHHHHHHHHHHHhhcCH
Q 001062 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQA--------------SVRKKSVSCIASLASSLSD 203 (1167)
Q Consensus 142 ~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~--------------~vrk~a~~~l~~l~~~~~~ 203 (1167)
++.+...-+..+..|+...+..+ +.++..+.+.+..+.. .+..+.-.+|..|....|.
T Consensus 87 ~~~~v~~y~~Fl~~Lvsa~~~yl----~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~ 158 (563)
T PF05327_consen 87 DEDFVEAYIQFLINLVSAQPKYL----SPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLVPT 158 (563)
T ss_dssp -HHHHHHHHHHHHHHHHH-GGGH----HHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-GG
T ss_pred CHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHcCC
Confidence 34566666677777777766644 4455555554443332 2334555666666655544
No 395
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.79 E-value=1.5e+03 Score=28.76 Aligned_cols=27 Identities=11% Similarity=-0.070 Sum_probs=17.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhhc
Q 001062 193 CIASLASSLSDDLLAKATIEVVRNLRS 219 (1167)
Q Consensus 193 ~l~~l~~~~~~~~~~~l~~~l~~~l~~ 219 (1167)
-+..++..++.+.+..+.+.++++.++
T Consensus 311 ~~~~~a~~~s~~~l~~~~qi~l~g~~e 337 (830)
T PRK07003 311 DLRRFAELLSPEQVQLFYQIATVGRGE 337 (830)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhHHHH
Confidence 456666777777666666666665544
No 396
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=21.86 E-value=8.3e+02 Score=24.60 Aligned_cols=166 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHH
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM 85 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l 85 (1167)
+..++.|+. +.--.....+|.+..... ++.....++..++....... .-....++.++.+....+......+
T Consensus 4 v~~~lnklt---~~n~~~~~~~l~~~~~~~----~~~~~~~i~~~i~~~a~~~~-~~~~~~a~l~~~l~~~~~~~f~~~l 75 (209)
T PF02854_consen 4 VRGILNKLT---PSNFESIIDELIKLNWSD----DPETLKEIVKLIFEKAVEEP-NFSPLYARLCAALNSRFPSEFRSLL 75 (209)
T ss_dssp HHHHHHHCS---STTHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHSG-GGHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHCC---HHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHhhhhhcCc-hHHHHHHHHHHHHhccchhhHHHHH
Q ss_pred HHHHHHHhcC--------CCcchhcHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHH
Q 001062 86 TDKLCIKLLN--------GKDQHRDIASIALKTIIAEVTTS-SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDV 156 (1167)
Q Consensus 86 ~~~L~~~~~~--------~~~~~r~~a~~aL~~~~~~~~~~-~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l 156 (1167)
++.+...+.. .......--..++-.++.++=.. -+...++-.++-.++........ +.-....++++..+
T Consensus 76 l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~-~~~~~~~ie~~~~l 154 (209)
T PF02854_consen 76 LNRCQEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQ-PPPDEENIECLCTL 154 (209)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCC-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhccccccc-CCCcHhHHHHHHHH
Q ss_pred HHHhccchh--HHHHHHHHHHhhhhc
Q 001062 157 LHKFGNLMS--NDHERLLSALLPQLS 180 (1167)
Q Consensus 157 ~~~~g~~l~--~~~~~l~~~ll~~l~ 180 (1167)
+..+|..+. +..+..+..++..+.
T Consensus 155 L~~~G~~l~~~~~~~~~l~~~~~~~~ 180 (209)
T PF02854_consen 155 LKTCGKKLENSEESPKALDEIFERLQ 180 (209)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHH
No 397
>COG3082 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.82 E-value=2.9e+02 Score=22.29 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=30.3
Q ss_pred hhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhc
Q 001062 75 KKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEV 115 (1167)
Q Consensus 75 ~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~ 115 (1167)
.++++++++.++..++..+.+-+.. .+.+.+.|++++.++
T Consensus 5 SkYsDe~ve~il~e~iaVLeKH~ap-~dLsLmvlGNmvtNl 44 (74)
T COG3082 5 SKYSDEQVEQILNELIAVLEKHKAP-TDLSLMVLGNMVTNL 44 (74)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHH
Confidence 4677888999999999888654333 578888888877654
No 398
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.68 E-value=3.2e+02 Score=32.12 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=57.7
Q ss_pred hhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 001062 511 ALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIS 590 (1167)
Q Consensus 511 ~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~ 590 (1167)
..+-.|.+.+++++++++.-||.++.-+++++|... ...=.=+.+++.++.+...+..+..||++++..|-.+-.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~f-----h~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSF-----HLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHH
Confidence 566778888898888999999999999999887632 000011255555556665544778999999999999888
Q ss_pred hcCc
Q 001062 591 TFGD 594 (1167)
Q Consensus 591 ~~g~ 594 (1167)
.++.
T Consensus 113 af~~ 116 (470)
T KOG1087|consen 113 AFCG 116 (470)
T ss_pred HccC
Confidence 7765
No 399
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=21.57 E-value=9.3e+02 Score=25.59 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhhHHH-----hhhcc-CChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHH
Q 001062 345 VRRAAAKCLAALIVSRPEMLSKLYEEACPKLI-----DRFKE-REENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1167)
Q Consensus 345 vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~-----~~l~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~ 418 (1167)
-|-+-+-+|=..+.++|+.=..+++.-+|..+ ...++ +.|-.|...++.++++++.-.. .
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~--------------e 159 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQ--------------E 159 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcH--------------H
Confidence 35566666667778888766666666555433 22333 4588999999999999985321 1
Q ss_pred HHHH-HHHHHHHHHHHHhccCChhhHHHHHHHHHHHH
Q 001062 419 LLKQ-EVSKIVKSINRQLREKSIKTKVGAFSVLRELV 454 (1167)
Q Consensus 419 ~l~~-~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~ 454 (1167)
.+.- ...+|++...+.+...++-.|..+..++..+.
T Consensus 160 Vi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 160 VIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred HHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 1111 12567777777776666656656655555543
No 400
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.01 E-value=2.8e+02 Score=27.93 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCC-hhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHH
Q 001062 344 KVRRAAAKCLAALIVSRP-EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQ 422 (1167)
Q Consensus 344 ~vR~aA~~~l~~li~~~~-~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~ 422 (1167)
.+|.....=+..++...| +.+..++..+... ....+.+.....+++.|+.++++... .+..
T Consensus 91 ~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~--~~~~~~~~~~~~~~l~Clkal~n~~~----------------G~~~ 152 (187)
T PF06371_consen 91 SLRTNPISWVQEFLELGGLEALLNVLSKLNKK--KEKSEEDIDIEHECLRCLKALMNTKY----------------GLEA 152 (187)
T ss_dssp HHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTH--HCTCTTCHHHHHHHHHHHHHHTSSHH----------------HHHH
T ss_pred HhccCCchHHHHhccCCCHHHHHHHHHHhhhh--hhhcchhHHHHHHHHHHHHHHHccHH----------------HHHH
Q ss_pred HH--HHHHHHHHHHhccCChhhHHHHHHHHHHHH
Q 001062 423 EV--SKIVKSINRQLREKSIKTKVGAFSVLRELV 454 (1167)
Q Consensus 423 ~~--~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~ 454 (1167)
.+ |..+..+...|.+++.++|..++.+|..++
T Consensus 153 v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 153 VLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
No 401
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.64 E-value=6.6e+02 Score=29.80 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccC
Q 001062 418 WLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDK 479 (1167)
Q Consensus 418 ~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~ 479 (1167)
..++..+|.+++.|.+.+.+.. + .....+..-.+.++..+..+++.|-..|.+.+.|.
T Consensus 488 ~llqevl~elle~I~~kl~~~~-k---~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~ 545 (705)
T KOG2307|consen 488 NLLQEVLPELLESIWGKLHDIT-K---VFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDV 545 (705)
T ss_pred hHHHHHhHHHHHHHHhhccchh-h---hhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHH
Confidence 3577888999988888776543 1 22233443445567777778888877777777654
No 402
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=20.23 E-value=8.7e+02 Score=27.53 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchh
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCL 461 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l 461 (1167)
.+.++.|.+.|..+++.+...++.++.+++..|+..|
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~ 80 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRF 80 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHH
Confidence 5678889999999999999999999999999888766
Done!