Query 001062
Match_columns 1167
No_of_seqs 284 out of 1702
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 09:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 100.0 3E-108 1E-112 1099.3 103.5 1143 1-1158 1-1158(1230)
2 1u6g_C TIP120 protein, CAND1; 100.0 1.9E-48 6.5E-53 521.2 66.5 983 4-1094 48-1186(1230)
3 4fdd_A Transportin-1; heat rep 100.0 8.6E-40 3E-44 420.6 55.9 683 5-776 49-763 (852)
4 1qgr_A Protein (importin beta 100.0 3.4E-37 1.2E-41 399.9 68.5 772 5-882 2-872 (876)
5 2bpt_A Importin beta-1 subunit 100.0 7.1E-37 2.4E-41 396.1 69.8 660 1-738 1-733 (861)
6 2bpt_A Importin beta-1 subunit 100.0 1.5E-35 5.2E-40 383.6 64.9 702 8-776 43-834 (861)
7 4fdd_A Transportin-1; heat rep 100.0 1.4E-33 4.8E-38 362.8 64.9 730 39-897 7-803 (852)
8 1qgr_A Protein (importin beta 100.0 2.8E-34 9.6E-39 372.5 52.9 647 5-714 129-872 (876)
9 1b3u_A Protein (protein phosph 100.0 1.9E-31 6.6E-36 329.3 44.4 571 48-712 12-586 (588)
10 1b3u_A Protein (protein phosph 100.0 5.3E-31 1.8E-35 325.4 48.2 569 4-669 10-585 (588)
11 2x1g_F Cadmus; transport prote 99.9 5E-23 1.7E-27 268.5 57.3 670 15-714 51-859 (971)
12 2x19_B Importin-13; nuclear tr 99.9 1.1E-22 3.9E-27 265.4 54.5 669 15-714 69-847 (963)
13 1ibr_B P95, importin beta-1 su 99.9 3.8E-23 1.3E-27 246.7 38.0 411 5-477 2-461 (462)
14 1wa5_C Importin alpha RE-expor 99.9 6.1E-21 2.1E-25 247.4 52.1 646 15-739 48-772 (960)
15 1ibr_B P95, importin beta-1 su 99.9 1.3E-20 4.6E-25 224.5 35.8 436 49-569 4-461 (462)
16 3m1i_C Exportin-1; heat repeat 99.9 7.8E-19 2.7E-23 229.6 54.7 665 15-714 60-879 (1049)
17 1wa5_C Importin alpha RE-expor 99.9 2.5E-17 8.5E-22 213.6 59.8 538 143-734 51-687 (960)
18 3ibv_A Exportin-T; karyopherin 99.8 1.4E-17 4.9E-22 212.0 50.3 665 17-714 56-871 (980)
19 2x1g_F Cadmus; transport prote 99.8 4E-16 1.4E-20 203.3 58.5 633 1-714 1-761 (971)
20 2x19_B Importin-13; nuclear tr 99.8 7.1E-15 2.4E-19 191.7 64.9 620 5-713 25-752 (963)
21 4hat_C Exportin-1; heat repeat 99.8 2E-15 6.7E-20 192.3 55.0 671 8-714 55-879 (1023)
22 2vgl_B AP-2 complex subunit be 99.8 1.1E-15 3.6E-20 186.6 41.3 479 3-588 48-530 (591)
23 2jdq_A Importin alpha-1 subuni 99.7 7.1E-16 2.4E-20 182.9 26.2 399 6-454 22-442 (450)
24 2jdq_A Importin alpha-1 subuni 99.7 2E-15 6.9E-20 178.9 29.8 398 86-540 22-443 (450)
25 2vgl_B AP-2 complex subunit be 99.7 4.7E-15 1.6E-19 180.9 33.0 503 5-625 14-528 (591)
26 3now_A UNC-45 protein, SD10334 99.7 1.2E-12 4.1E-17 159.6 50.3 659 375-1095 54-784 (810)
27 3now_A UNC-45 protein, SD10334 99.7 2.5E-12 8.5E-17 156.8 51.0 647 14-740 18-762 (810)
28 2z6g_A B-catenin; FULL-length, 99.7 6.8E-14 2.3E-18 175.7 36.8 507 5-593 116-666 (780)
29 1wa5_B Importin alpha subunit; 99.7 2.8E-14 9.7E-19 172.5 31.1 398 45-499 86-511 (530)
30 1wa5_B Importin alpha subunit; 99.6 1.5E-14 5.2E-19 174.9 27.6 400 84-540 87-510 (530)
31 4b8j_A Importin subunit alpha- 99.6 3E-14 1E-18 172.4 30.0 404 5-455 75-496 (528)
32 3gjx_A Exportin-1; transport, 99.6 4.3E-12 1.5E-16 160.5 50.3 666 15-714 72-905 (1073)
33 1w63_A Adapter-related protein 99.6 1.3E-12 4.6E-17 159.6 40.3 478 5-589 71-576 (618)
34 3m1i_C Exportin-1; heat repeat 99.6 1.2E-11 4.2E-16 161.6 51.3 531 3-610 15-640 (1049)
35 4b8j_A Importin subunit alpha- 99.6 4.3E-13 1.5E-17 162.2 33.3 399 86-540 76-496 (528)
36 2z6h_A Catenin beta-1, beta-ca 99.6 1.1E-12 3.8E-17 162.3 37.5 472 45-591 13-528 (644)
37 1w63_A Adapter-related protein 99.6 3.5E-12 1.2E-16 155.9 41.1 455 170-713 107-577 (618)
38 3a6p_A Exportin-5; exportin-5, 99.6 2.8E-12 9.4E-17 168.1 42.7 517 14-569 57-681 (1204)
39 2z6g_A B-catenin; FULL-length, 99.6 4E-13 1.4E-17 168.7 32.6 510 86-674 117-666 (780)
40 3ibv_A Exportin-T; karyopherin 99.6 1.8E-11 6.1E-16 156.1 45.7 553 15-630 204-871 (980)
41 2qk2_A LP04448P; mini spindles 99.5 7.2E-14 2.5E-18 149.8 17.4 195 339-562 25-221 (242)
42 2qk2_A LP04448P; mini spindles 99.5 1.4E-13 4.9E-18 147.4 16.6 191 8-210 19-216 (242)
43 2z6h_A Catenin beta-1, beta-ca 99.5 1.5E-11 5.1E-16 152.1 36.3 473 5-540 15-527 (644)
44 4hat_C Exportin-1; heat repeat 99.5 3.3E-09 1.1E-13 135.2 56.2 571 4-650 16-696 (1023)
45 1jdh_A Beta-catenin; beta-cate 99.5 2E-11 6.9E-16 147.7 33.5 469 5-538 18-528 (529)
46 1jdh_A Beta-catenin; beta-cate 99.5 2.4E-11 8.4E-16 147.0 34.1 469 43-588 14-528 (529)
47 2vgl_A Adaptor protein complex 99.5 7.7E-11 2.6E-15 143.3 38.0 484 6-588 76-587 (621)
48 3ul1_B Importin subunit alpha- 99.4 2.1E-11 7.2E-16 145.8 30.2 399 4-453 57-476 (510)
49 3tpo_A Importin subunit alpha- 99.4 4.2E-11 1.4E-15 144.1 32.4 399 4-453 76-495 (529)
50 2vgl_A Adaptor protein complex 99.4 1.2E-09 4.2E-14 132.7 39.3 453 169-712 110-588 (621)
51 2qk1_A Protein STU2; STU2P, XM 99.4 5.6E-12 1.9E-16 134.3 16.2 199 339-560 26-234 (249)
52 2qk1_A Protein STU2; STU2P, XM 99.4 8.1E-12 2.8E-16 133.1 17.3 202 8-213 20-234 (249)
53 3ul1_B Importin subunit alpha- 99.3 4.1E-10 1.4E-14 134.6 31.4 398 87-539 60-477 (510)
54 3tpo_A Importin subunit alpha- 99.3 8.5E-10 2.9E-14 132.7 32.6 399 86-539 78-496 (529)
55 3gjx_A Exportin-1; transport, 99.3 6.8E-07 2.3E-11 113.3 57.0 542 46-736 28-666 (1073)
56 4ady_A RPN2, 26S proteasome re 99.2 6.7E-06 2.3E-10 100.4 55.3 354 648-1086 364-743 (963)
57 1oyz_A Hypothetical protein YI 99.1 3E-09 1E-13 116.5 21.8 252 47-394 24-277 (280)
58 2iw3_A Elongation factor 3A; a 99.1 3.1E-09 1.1E-13 131.4 23.0 267 6-284 16-325 (986)
59 2iw3_A Elongation factor 3A; a 99.1 3.5E-08 1.2E-12 122.1 31.4 305 175-594 19-328 (986)
60 1oyz_A Hypothetical protein YI 99.1 7.9E-09 2.7E-13 113.2 21.8 238 5-305 24-262 (280)
61 4hxt_A De novo protein OR329; 99.0 4.6E-09 1.6E-13 112.9 18.4 236 47-291 3-249 (252)
62 4hxt_A De novo protein OR329; 99.0 4.1E-09 1.4E-13 113.4 16.7 238 5-248 3-250 (252)
63 4ady_A RPN2, 26S proteasome re 99.0 6.4E-05 2.2E-09 92.0 53.2 289 811-1149 392-693 (963)
64 3opb_A SWI5-dependent HO expre 98.9 1.7E-06 5.8E-11 103.5 36.6 487 522-1037 181-731 (778)
65 4db8_A Armadillo-repeat protei 98.9 3.7E-09 1.3E-13 113.8 12.7 231 4-239 12-251 (252)
66 4db8_A Armadillo-repeat protei 98.9 6.5E-09 2.2E-13 111.8 14.1 225 48-282 14-250 (252)
67 3a6p_A Exportin-5; exportin-5, 98.9 1.1E-05 3.8E-10 105.8 46.5 532 4-617 11-686 (1204)
68 3l6x_A Catenin delta-1; cateni 98.9 1.6E-06 5.6E-11 102.2 34.8 355 47-455 49-476 (584)
69 2db0_A 253AA long hypothetical 98.9 6.6E-07 2.2E-11 84.3 24.6 203 341-590 44-246 (253)
70 1xm9_A Plakophilin 1; armadill 98.8 9.1E-07 3.1E-11 103.8 29.3 348 48-454 4-448 (457)
71 1xm9_A Plakophilin 1; armadill 98.8 5.3E-07 1.8E-11 105.8 26.1 354 5-398 3-448 (457)
72 3opb_A SWI5-dependent HO expre 98.8 0.00051 1.7E-08 82.4 50.6 544 110-739 119-708 (778)
73 3ltj_A Alpharep-4; protein eng 98.8 5.5E-08 1.9E-12 100.4 14.5 187 42-281 10-196 (201)
74 3ltm_A Alpha-REP4; protein eng 98.8 3.8E-08 1.3E-12 102.5 13.1 188 45-285 18-205 (211)
75 2db0_A 253AA long hypothetical 98.8 8.8E-07 3E-11 83.4 20.1 216 125-399 30-246 (253)
76 3l6x_A Catenin delta-1; cateni 98.8 1.9E-06 6.4E-11 101.7 28.3 361 5-400 49-477 (584)
77 3ltj_A Alpharep-4; protein eng 98.7 1.2E-07 4.2E-12 97.8 15.9 183 4-237 14-196 (201)
78 3ltm_A Alpha-REP4; protein eng 98.7 2.8E-07 9.6E-12 95.9 18.4 188 810-1037 18-206 (211)
79 2of3_A ZYG-9; multifunctional 98.7 4.1E-07 1.4E-11 95.2 19.0 181 8-207 50-244 (266)
80 4ffb_C Protein STU2; tubulin f 98.7 2.1E-07 7.1E-12 101.4 17.6 190 339-544 19-216 (278)
81 4gmo_A Putative uncharacterize 98.6 6.6E-05 2.3E-09 92.4 38.3 77 5-82 35-112 (684)
82 4db6_A Armadillo repeat protei 98.6 3E-07 1E-11 95.6 14.8 191 6-199 14-209 (210)
83 3nmz_A APC variant protein; pr 98.6 1.1E-05 3.7E-10 93.0 26.2 303 17-362 95-454 (458)
84 1xqr_A HSPBP1 protein; armadil 98.5 5.7E-06 1.9E-10 89.8 20.8 178 19-201 55-240 (296)
85 4db6_A Armadillo repeat protei 98.5 9.7E-07 3.3E-11 91.6 14.1 180 851-1034 11-209 (210)
86 3nmz_A APC variant protein; pr 98.5 9.5E-05 3.2E-09 85.2 31.3 312 98-460 96-455 (458)
87 1xqr_A HSPBP1 protein; armadil 98.4 1.1E-05 3.6E-10 87.7 21.1 196 42-242 24-241 (296)
88 2of3_A ZYG-9; multifunctional 98.4 1.2E-05 4.2E-10 84.1 19.3 179 342-544 59-240 (266)
89 4ffb_C Protein STU2; tubulin f 98.3 1.1E-05 3.8E-10 87.6 17.0 187 9-204 14-217 (278)
90 3nmw_A APC variant protein; AR 98.3 3.9E-05 1.3E-09 85.7 20.6 259 19-290 47-341 (354)
91 3b2a_A TON_1937, putative unch 98.1 4.9E-05 1.7E-09 75.4 15.5 214 45-277 32-255 (265)
92 3b2a_A TON_1937, putative unch 98.1 0.00061 2.1E-08 67.8 22.8 218 251-531 33-252 (265)
93 3grl_A General vesicular trans 98.0 0.0011 3.7E-08 77.4 26.2 344 170-590 21-394 (651)
94 3oc3_A Helicase MOT1, MOT1; re 98.0 8.4E-05 2.9E-09 82.8 15.5 231 339-625 184-432 (800)
95 3nmw_A APC variant protein; AR 98.0 0.00046 1.6E-08 77.0 22.0 264 57-362 43-338 (354)
96 1vsy_5 Proteasome activator BL 97.9 0.095 3.2E-06 66.1 44.0 583 83-714 132-874 (997)
97 1vsy_5 Proteasome activator BL 97.9 0.00017 5.9E-09 90.8 18.4 395 42-501 504-969 (997)
98 3tjz_B Coatomer subunit gamma; 97.9 0.00017 5.8E-09 79.4 15.9 302 342-708 41-348 (355)
99 3grl_A General vesicular trans 97.8 0.0018 6.2E-08 75.5 22.4 321 83-457 20-396 (651)
100 3oc3_A Helicase MOT1, MOT1; re 97.5 0.00093 3.2E-08 74.7 14.9 211 47-282 175-403 (800)
101 3tjz_B Coatomer subunit gamma; 97.5 0.00025 8.4E-09 78.1 9.8 226 5-254 105-331 (355)
102 3u0r_A Apoptosis inhibitor 5; 97.5 0.089 3E-06 58.6 29.1 278 9-308 34-325 (507)
103 1te4_A Conserved protein MTH18 97.4 8.8E-05 3E-09 70.0 4.1 118 5-155 13-130 (131)
104 1te4_A Conserved protein MTH18 97.3 5.4E-05 1.8E-09 71.4 1.0 118 851-989 11-129 (131)
105 3l9t_A Putative uncharacterize 97.2 0.0021 7.3E-08 64.8 11.4 148 851-1046 70-219 (240)
106 4gmo_A Putative uncharacterize 97.1 0.46 1.6E-05 58.1 33.2 157 126-285 34-216 (684)
107 1vsy_4 Proteasome activator BL 96.9 0.22 7.7E-06 61.0 28.5 321 167-542 336-689 (799)
108 3tt9_A Plakophilin-2; cell adh 96.8 0.056 1.9E-06 55.7 18.9 187 48-238 10-228 (233)
109 1vsy_4 Proteasome activator BL 96.6 0.22 7.5E-06 61.1 24.9 265 37-304 326-666 (799)
110 3u0r_A Apoptosis inhibitor 5; 96.3 0.52 1.8E-05 52.6 23.1 241 3-261 64-322 (507)
111 4atg_A TAF6; transcription, TF 96.1 0.53 1.8E-05 46.3 19.6 148 459-628 7-161 (196)
112 3tt9_A Plakophilin-2; cell adh 96.1 0.077 2.6E-06 54.7 14.2 194 3-199 7-229 (233)
113 3fga_B Serine/threonine-protei 95.7 3.1 0.00011 45.9 25.8 303 18-365 33-373 (403)
114 1w9c_A CRM1 protein, exportin 95.1 0.3 1E-05 52.1 14.5 181 385-578 44-234 (321)
115 3l9t_A Putative uncharacterize 95.1 0.28 9.7E-06 49.5 13.4 37 1107-1143 181-218 (240)
116 1w9c_A CRM1 protein, exportin 94.9 0.69 2.4E-05 49.3 16.5 164 344-525 44-229 (321)
117 2npp_B PP2A, B subunit, serine 94.8 2 6.8E-05 48.3 20.8 301 18-363 66-404 (449)
118 1lrv_A LRV, leucine-rich repea 94.3 0.0088 3E-07 62.2 0.6 39 13-69 59-97 (244)
119 3fga_B Serine/threonine-protei 94.3 8 0.00027 42.6 24.6 90 491-591 273-367 (403)
120 4atg_A TAF6; transcription, TF 94.2 2.1 7.2E-05 42.1 17.1 146 419-588 8-160 (196)
121 1lrv_A LRV, leucine-rich repea 93.9 0.011 3.6E-07 61.6 0.2 60 142-235 183-242 (244)
122 3o2t_A Symplekin; heat repeat, 92.6 14 0.00049 40.6 23.4 145 484-672 40-184 (386)
123 2npp_B PP2A, B subunit, serine 91.5 21 0.00073 40.0 22.8 89 490-589 305-398 (449)
124 3o2t_A Symplekin; heat repeat, 90.4 24 0.00082 38.8 28.7 273 6-304 27-320 (386)
125 2jak_A Serine/threonine-protei 88.3 33 0.0011 37.6 23.4 251 18-278 78-362 (392)
126 1upk_A MO25 protein; transfera 86.4 16 0.00055 38.9 15.7 112 428-541 166-284 (341)
127 1lsh_A Lipovitellin (LV-1N, LV 85.9 18 0.00063 46.2 19.4 97 929-1038 439-544 (1056)
128 3tj1_A RNA polymerase I-specif 84.7 20 0.00068 42.1 16.9 136 156-300 121-259 (649)
129 3gs3_A Symplekin, LD45768P; he 81.2 53 0.0018 33.8 26.6 147 5-159 16-174 (257)
130 1lsh_A Lipovitellin (LV-1N, LV 80.0 1.4E+02 0.0048 38.0 25.1 124 224-394 409-538 (1056)
131 3dad_A FH1/FH2 domain-containi 79.6 19 0.00065 38.5 13.0 148 4-161 118-289 (339)
132 3gs3_A Symplekin, LD45768P; he 78.4 65 0.0022 33.2 27.1 202 186-458 31-246 (257)
133 2jak_A Serine/threonine-protei 76.2 96 0.0033 34.0 18.8 47 490-536 317-363 (392)
134 3ldz_A STAM-1, signal transduc 68.6 59 0.002 29.9 12.0 90 351-459 27-118 (140)
135 3ldz_A STAM-1, signal transduc 66.3 33 0.0011 31.6 9.9 74 210-288 44-119 (140)
136 1ho8_A Vacuolar ATP synthase s 65.8 1.8E+02 0.0061 32.8 27.9 117 142-260 91-220 (480)
137 1x5b_A Signal transducing adap 64.1 38 0.0013 32.2 10.0 75 210-288 54-130 (163)
138 1sz9_A PCF11 protein; RNA poly 64.0 85 0.0029 29.0 12.1 113 181-304 22-135 (144)
139 3g2s_A C-terminal fragment of 64.0 49 0.0017 30.8 10.5 90 351-459 33-130 (149)
140 1x5b_A Signal transducing adap 63.4 45 0.0015 31.7 10.4 74 425-499 51-126 (163)
141 3jxy_A Alkylpurine DNA glycosy 63.4 52 0.0018 33.4 11.7 90 951-1046 118-207 (232)
142 1upk_A MO25 protein; transfera 62.5 1.7E+02 0.0057 31.3 23.3 110 377-499 171-284 (341)
143 1mhq_A ADP-ribosylation factor 61.6 1E+02 0.0035 28.6 12.6 89 352-459 24-120 (148)
144 3s4w_B Protein FACD2, fanconi 60.3 3.7E+02 0.013 34.6 27.5 144 379-543 409-552 (1323)
145 3g2s_A C-terminal fragment of 59.7 38 0.0013 31.6 8.9 79 511-594 48-130 (149)
146 1juq_A ADP-ribosylation factor 57.0 64 0.0022 30.9 10.3 86 210-299 52-142 (171)
147 1juq_A ADP-ribosylation factor 56.8 94 0.0032 29.7 11.4 89 352-459 36-132 (171)
148 2b6c_A Hypothetical protein EF 55.5 20 0.00069 36.2 6.9 94 944-1044 104-198 (220)
149 3d9j_A RNA-binding protein 16; 55.3 54 0.0018 30.4 9.2 96 186-284 21-120 (145)
150 1sz9_A PCF11 protein; RNA poly 55.0 87 0.003 28.9 10.5 90 619-714 25-115 (144)
151 1mhq_A ADP-ribosylation factor 54.8 59 0.002 30.3 9.4 77 511-594 38-120 (148)
152 3zyq_A Hepatocyte growth facto 54.3 69 0.0024 32.3 10.6 74 211-288 48-123 (226)
153 4flb_A Regulation of nuclear P 52.2 1.2E+02 0.004 27.5 10.9 104 168-284 6-113 (132)
154 1dvp_A HRS, hepatocyte growth 52.1 69 0.0024 32.1 10.3 87 210-300 44-133 (220)
155 3dad_A FH1/FH2 domain-containi 50.8 2.6E+02 0.0087 29.9 16.9 109 46-160 118-233 (339)
156 4fu3_A Regulation of nuclear P 47.9 59 0.002 29.6 8.2 103 172-284 9-114 (135)
157 1ho8_A Vacuolar ATP synthase s 44.2 3.9E+02 0.013 30.1 23.2 257 9-284 172-477 (480)
158 1elk_A Target of MYB1; superhe 43.9 1.3E+02 0.0045 28.2 10.0 77 210-287 55-134 (157)
159 3rru_A TOM1L1 protein; structu 40.4 1.3E+02 0.0044 28.1 9.2 77 425-501 52-133 (152)
160 1vdy_A Hypothetical protein (R 39.9 82 0.0028 28.9 7.5 78 1004-1094 48-131 (140)
161 3jxy_A Alkylpurine DNA glycosy 39.6 2.2E+02 0.0076 28.6 11.8 65 1075-1144 142-207 (232)
162 3zyq_A Hepatocyte growth facto 39.0 1.4E+02 0.0049 29.9 10.1 75 425-500 44-120 (226)
163 2juz_A UPF0352 protein HI0840; 38.8 35 0.0012 27.2 4.1 40 74-114 4-43 (80)
164 1elk_A Target of MYB1; superhe 38.8 1.7E+02 0.0057 27.4 9.9 74 425-498 52-130 (157)
165 1dvp_A HRS, hepatocyte growth 38.7 1.1E+02 0.0036 30.7 9.1 74 425-499 41-116 (220)
166 2juw_A UPF0352 protein SO_2176 37.5 42 0.0014 26.8 4.3 40 74-114 4-43 (80)
167 1vdy_A Hypothetical protein (R 34.3 60 0.002 29.8 5.7 74 8-84 14-87 (140)
168 2jpq_A UPF0352 protein VP2129; 34.1 38 0.0013 27.2 3.6 41 73-114 3-43 (83)
169 3eg5_B Protein diaphanous homo 32.2 3.2E+02 0.011 29.9 12.4 58 384-457 134-193 (383)
170 3ut4_A CTHE_2751, putative unc 30.0 1.4E+02 0.0047 27.1 7.1 81 198-297 21-105 (134)
171 4flb_A Regulation of nuclear P 29.5 1.9E+02 0.0063 26.1 8.4 99 852-954 8-107 (132)
172 2jrx_A UPF0352 protein YEJL; h 28.8 30 0.001 27.8 2.2 41 73-114 3-43 (83)
173 3d9j_A RNA-binding protein 16; 28.7 3.1E+02 0.011 25.1 9.8 38 422-459 38-75 (145)
174 2jr2_A UPF0352 protein CPS_261 27.4 54 0.0019 25.9 3.4 40 74-114 4-43 (76)
175 3rru_A TOM1L1 protein; structu 26.4 2.1E+02 0.0073 26.6 8.1 78 210-288 55-135 (152)
176 3ebb_A Phospholipase A2-activa 25.7 6E+02 0.02 26.6 12.9 151 428-589 105-262 (304)
177 1h2v_C 80 kDa nuclear CAP bind 23.2 3.1E+02 0.011 33.3 10.9 151 450-612 31-181 (771)
178 4fu3_A Regulation of nuclear P 20.7 3.2E+02 0.011 24.5 8.3 66 851-918 6-72 (135)
179 3clj_A Protein NRD1; CTD-inter 20.4 5.2E+02 0.018 24.0 10.2 86 207-297 40-146 (157)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=3.1e-108 Score=1099.35 Aligned_cols=1143 Identities=44% Similarity=0.736 Sum_probs=988.2
Q ss_pred Cch--HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcC
Q 001062 1 MAN--LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1167)
Q Consensus 1 ~~~--~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~ 78 (1167)
|++ +++..+++++.++|+|+|+||++||.+.++.+.++.++...+++++.+++.|.|++++||++|++||+.++..++
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~ 80 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK 80 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCchHhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC
Confidence 665 999999999999999999999999999999887788888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc----hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHH
Q 001062 79 EPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS----SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1167)
Q Consensus 79 ~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~----~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~ 154 (1167)
+..+..+++.|+..+.++++.+|..++.+|+.++..++.. .....+.+.++|.|+..+.+. .++.+|..++++|+
T Consensus 81 ~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHH
Confidence 9889999999999998888889999999999999988763 134567889999999999752 26899999999999
Q ss_pred HHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001062 155 DVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1167)
Q Consensus 155 ~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l 234 (1167)
++++.+|..+.++.+.+++.+++.+.++++.+|++|+.|++.++...+++.++.+++.++..+.+..+ ...|..+++++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l 238 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCI 238 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHH
Confidence 99999999888999999999999999999999999999999999999988888889999988877643 35788899999
Q ss_pred HHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCC
Q 001062 235 GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNM 314 (1167)
Q Consensus 235 ~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~ 314 (1167)
+.+++..|..|.||++.++|.+++.+++ +++++|+.++++++.|+..+++++.||++.+++.+++.+++||+|..++
T Consensus 239 ~~l~~~~~~~~~~~l~~l~~~ll~~l~d---~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~ 315 (1230)
T 1u6g_C 239 AAISRQAGHRIGEYLEKIIPLVVKFCNV---DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDD 315 (1230)
T ss_dssp HHHHHHSSGGGTTSCTTHHHHHHHHHSS---CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcc
Confidence 9999999999999999999999999987 7889999999999999999999999999999999999999999873321
Q ss_pred CCCC-ccccc--ccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHH
Q 001062 315 EEDS-DDEAY--EEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVF 391 (1167)
Q Consensus 315 ~~d~-~~~~~--~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~ 391 (1167)
+++. +.+++ +++++++.+++|++++|.+|+||++|+.+++.++...|+.+.++++.++|.++.+++|++++||..++
T Consensus 316 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~ 395 (1230)
T 1u6g_C 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVF 395 (1230)
T ss_dssp -----------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHH
T ss_pred cccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 1111 11111 11112222346777788999999999999999999888888899999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCccCC----CCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhh
Q 001062 392 NTFIELVRQTGNVTKGQIDN----NELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGS 467 (1167)
Q Consensus 392 ~~l~~l~~~~~~~~~~~~~~----~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~ 467 (1167)
.++..+++..+....|..+. ...+|...+..++|.+++.+.+.++++++++|++++.+++.++..+++.+.+|++.
T Consensus 396 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ 475 (1230)
T 1u6g_C 396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 475 (1230)
T ss_dssp HHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH
T ss_pred HHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHH
Confidence 99999998765321110000 00134456778899999999999999999999999999999999998888899999
Q ss_pred hHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcc
Q 001062 468 LIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE 547 (1167)
Q Consensus 468 l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~ 547 (1167)
++|.+...|.|+.....++.+++..+..+++.++++.+.+|++.++|.+..+++|++++++.+|+.+++.+++.+++...
T Consensus 476 ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~ 555 (1230)
T 1u6g_C 476 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555 (1230)
T ss_dssp HHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999998754457899999999999998888889999999999999999999999999999999999998876210
Q ss_pred ccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHH
Q 001062 548 GLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVI 627 (1167)
Q Consensus 548 ~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i 627 (1167)
..+..+.||++.+++.++..+...+.++++|+.|+.++|.++...|+.+.++++.+++.|.+.+.++.+|..++++++.+
T Consensus 556 ~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i 635 (1230)
T 1u6g_C 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLI 635 (1230)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 01336889999999999999976688899999999999999999999998999999999999999999999999999999
Q ss_pred hcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHH
Q 001062 628 AASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALEL 707 (1167)
Q Consensus 628 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~ 707 (1167)
+.+..+.++.+|++.+++.|...++++++.+|.+++.|++.++...+..+..+.+.+++..+.++++++|.+....++++
T Consensus 636 ~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~ 715 (1230)
T 1u6g_C 636 AGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISF 715 (1230)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHH
T ss_pred HhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Confidence 97766667899999999999999999999999999999999999998777777888888888888888999999999999
Q ss_pred HHHHhhcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccC--CChHHHHHHHhhcCCCCCCCcch
Q 001062 708 CCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSAN--TSFDTLLDSLLSSAKPSPQSGGV 785 (1167)
Q Consensus 708 l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~--~~~~~ll~~L~~~~~~~~~~~~~ 785 (1167)
|+.+++. .|.....+.+.++|.++.+++++.+++.++.++..+++.++..++ ..++.+++.++..+... .....
T Consensus 716 L~~l~~~---~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~-~~~~~ 791 (1230)
T 1u6g_C 716 LTTLAKV---YPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQ-STALT 791 (1230)
T ss_dssp HHHHTTS---CGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC-----C
T ss_pred HHHHHHh---CchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCC-CCccc
Confidence 9999987 666555678899999999999988889888899999999987663 47889999998765321 11112
Q ss_pred hhhhhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCh
Q 001062 786 AKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPF 865 (1167)
Q Consensus 786 ~~~a~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~l~~~l~~~~ 865 (1167)
++++...+++|+|.++...++ ....+++.|...+++. ......+.+++.++|++|...++..++++++.++++|.+++
T Consensus 792 ~~~~~~~~a~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l~~~~ 869 (1230)
T 1u6g_C 792 HKQSYYSIAKCVAALTRACPK-EGPAVVGQFIQDVKNS-RSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPS 869 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSCC-CSHHHHTTTTTTTTTT-TCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSC
T ss_pred cchhhHHHHHHHHHHHHhcch-hhHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHhCCCC
Confidence 356778899999998776665 3346777777777642 24567788999999999988777766789999999999999
Q ss_pred hhHHHHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccc
Q 001062 866 EEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEG 945 (1167)
Q Consensus 866 e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~e~ 945 (1167)
++||.+|+.|||.++.+++..++|.+++.+.++++.|+.+++||+|++.+.+.. .+.|+..+||+.|++.+++.+++
T Consensus 870 ~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~~~---~~~~~~~~i~~~L~~~~~~~~~~ 946 (1230)
T 1u6g_C 870 EEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVV---GLKPYVENIWALLLKHCECAEEG 946 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCST---TTHHHHHHHHHHHTTCCCCSSTT
T ss_pred HHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCChh---hHHhhHHHHHHHHHHHhcCcchh
Confidence 999999999999999999999999999999888888999999999999876543 78899999999999999888889
Q ss_pred hhhHHHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHH
Q 001062 946 VRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAA 1025 (1167)
Q Consensus 946 vr~~aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a 1025 (1167)
+|+.+++|||+++..+++.++|.|.+.+++.++.+|.++++++++++.+.+..+++++.++++.|+.+|+|+|.+||++|
T Consensus 947 ~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a 1026 (1230)
T 1u6g_C 947 TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVA 1026 (1230)
T ss_dssp HHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHH
T ss_pred hHHHHHHHHhhhhccChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999999999999999999999989999999999999999988877888999999999999999999999999
Q ss_pred HHHHHHHHhcCchhhhchhhhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhhccccCCcccch
Q 001062 1026 VLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFI 1105 (1167)
Q Consensus 1026 ~~~L~~~a~~~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~~~~~~~~~~~~ 1105 (1167)
+.+|++++|++|+++.++++.++|.||+++.++++++|+|+||||||++|||+++||.||+|||+|++.|.+++++.+|+
T Consensus 1027 ~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~ 1106 (1230)
T 1u6g_C 1027 LVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL 1106 (1230)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHH
T ss_pred HHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCcchhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhccccc
Q 001062 1106 VPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLADFLHLMYTIITFSVGLIG 1158 (1167)
Q Consensus 1106 ~~~~~~gl~D~~di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~~~~~~~~~~~ 1158 (1167)
++++.|++|++|||++||.+|.+|++.+|..|.+++|+++++++++++.=..
T Consensus 1107 -~~~~~gl~d~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1158 (1230)
T 1u6g_C 1107 -NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVK 1158 (1230)
T ss_dssp -HHHHHTTSSCHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHHHHHCCCC
T ss_pred -HHHHcccCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8999999999999999999999999999999999999999999999875443
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.9e-48 Score=521.19 Aligned_cols=983 Identities=16% Similarity=0.207 Sum_probs=723.9
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChh---
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP--- 80 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~--- 80 (1167)
..+..+++.+.+.++.+|.+|...|...... ..+.....+++.++..+.|+++.||..|..+++.++..+++.
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~----~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSK----VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 4567788889999999999999999887753 345678899999999999999999999999999999888765
Q ss_pred ------hHHHHHHHHHHHhcC-CCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHH
Q 001062 81 ------RVVEMTDKLCIKLLN-GKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDIL 153 (1167)
Q Consensus 81 ------~~~~l~~~L~~~~~~-~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L 153 (1167)
.|..+++.|+..+.+ ++..+|..+..+|..+++..+.. ..++.+.+++.++..+.++ ++.+|..++.++
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~--l~~~~~~ll~~l~~~L~~~--~~~vR~~a~~al 199 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL--LVNFHPSILTCLLPQLTSP--RLAVRKRTIIAL 199 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS--CTTTHHHHHHHHGGGGGCS--SHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH--HHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHH
Confidence 689999999999984 66778999999999999876652 2346688999999999875 578999999999
Q ss_pred HHHHHHhccchhHHHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHhhcCCCChHHHHH
Q 001062 154 CDVLHKFGNLMSNDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDD---LLAKATIEVVRNLRSKGAKPEMIRT 229 (1167)
Q Consensus 154 ~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~~~r~~ 229 (1167)
+.++...+..+ .+.+++.+++.+.++. +.+|+.++.+++.++...++. ++..+++.++..+.+++ .+.|+.
T Consensus 200 ~~l~~~~~~~~---~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~--~~vR~~ 274 (1230)
T 1u6g_C 200 GHLVMSCGNIV---FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDD--DELREY 274 (1230)
T ss_dssp HHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCC--TTTHHH
T ss_pred HHHHHhcCHHH---HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC--HHHHHH
Confidence 99998877643 3445666666665443 478999999999999987764 46788999999888754 478999
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhc-------------------C-CC--------------ChhHHHHHH
Q 001062 230 NIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA-------------------S-EN--------------DEELREYSL 275 (1167)
Q Consensus 230 ~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~-------------------~-e~--------------~~e~re~al 275 (1167)
++++++.+++.+|..|.||++.++|.+++.+.++ + |+ ..++|..+.
T Consensus 275 a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~ 354 (1230)
T 1u6g_C 275 CIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAA 354 (1230)
T ss_dssp HHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHH
T ss_pred HHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHH
Confidence 9999999999999999999999999999877521 0 00 123699999
Q ss_pred HHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHH
Q 001062 276 QALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAA 355 (1167)
Q Consensus 276 ~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~ 355 (1167)
.++..++...|..+.+|++.+++.+...+. | ..+.||.+++.++..
T Consensus 355 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-d---------------------------------~~~~Vr~~a~~~l~~ 400 (1230)
T 1u6g_C 355 KCLDAVVSTRHEMLPEFYKTVSPALISRFK-E---------------------------------REENVKADVFHAYLS 400 (1230)
T ss_dssp HHHHHHHTTCCTTHHHHHTTTHHHHHSTTS-C---------------------------------SSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHcC-C---------------------------------CchHHHHHHHHHHHH
Confidence 999999998887788999999988765542 1 123899999999998
Q ss_pred HHhcCC-------------------hhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCch
Q 001062 356 LIVSRP-------------------EMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNP 416 (1167)
Q Consensus 356 li~~~~-------------------~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p 416 (1167)
++...+ ..+..++..++|.+.+.+++.++.+|..++.+++.++...+.
T Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~------------- 467 (1230)
T 1u6g_C 401 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG------------- 467 (1230)
T ss_dssp HHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT-------------
T ss_pred HHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchh-------------
Confidence 887432 233456666777777778999999999999999999887431
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCh--hhHHHHHHHHHHHHHhcCch-hHhhhhhhHHHHHHhcccCCCCchHHHHHHHHH
Q 001062 417 RWLLKQEVSKIVKSINRQLREKSI--KTKVGAFSVLRELVVVLPDC-LADHIGSLIPGIEKSLNDKSSTSNLKIEALTFT 493 (1167)
Q Consensus 417 ~~~l~~~~~~l~~~l~~~L~~~~~--~~r~~~~~~l~~l~~~~~~~-l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l 493 (1167)
.+.++++.+++.+.+.|+++++ .+|..++..+..++..+++. +.+|++.++|.+...+.|+ ...++.+++..+
T Consensus 468 --~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~--~~~v~~~al~~l 543 (1230)
T 1u6g_C 468 --ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP--FYKITSEALLVT 543 (1230)
T ss_dssp --TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS--SHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHccc--chHHHHHHHHHH
Confidence 3456788999999999998865 78888888999888877554 8899999999999999886 457788888899
Q ss_pred HHHhccCCC------CchhhhhHhhHHHHHHHh--cCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHH
Q 001062 494 RLVLSSHSP------PVFHPYIKALSSPVLAAV--GERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIM 565 (1167)
Q Consensus 494 ~~l~~~~~~------~~~~~~l~~ll~~l~~~l--~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll 565 (1167)
+.+++..++ ..+.||++.++|.++..+ .|.++.++..|+.++|.++...++ .+.++++.+++.+.
T Consensus 544 ~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~-------~~~~~~~~~l~~L~ 616 (1230)
T 1u6g_C 544 QQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD-------NLGSDLPNTLQIFL 616 (1230)
T ss_dssp HHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG-------GCCTHHHHHHHHHH
T ss_pred HHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc-------hhhhhHHHHHHHHH
Confidence 988876543 478899999999999999 678889999999999999998765 46789999999998
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhcC-cccccchhhhHHHHHHhhcCc--hhhHHHHHHHHHHhcCCCCCchhhHHHH
Q 001062 566 SRLTNQDQDQEVKECAISCMGLVISTFG-DNLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDLTCVLEH 642 (1167)
Q Consensus 566 ~~l~~~d~~~~vr~~Ai~alg~l~~~~g-~~l~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~~~~~~~~~~~~~~ 642 (1167)
+.+.+. ..|..++.+++.++...+ ..+.++++.++|.+...++.+ ..|..++.+++.++......-..+++..
T Consensus 617 ~~l~~e----~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~ 692 (1230)
T 1u6g_C 617 ERLKNE----ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDA 692 (1230)
T ss_dssp HHTTSS----SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHhccc----hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHH
Confidence 888632 368889999998875432 245678899999999888644 4789999999999843211111345555
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCc--hhhHHHHHHHHHHHhhcccCCCc
Q 001062 643 VIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSD--LHMTALALELCCTLMADKRSSPN 720 (1167)
Q Consensus 643 ~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d--~~~~~~al~~l~~l~~~~~~~p~ 720 (1167)
++..+.+++..+|...+..++.+|..+++..+..+. .....+++.+..++..+- ....+..+.++..+... .+.
T Consensus 693 ~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~---~~~ 768 (1230)
T 1u6g_C 693 VLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS-KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVT---GTN 768 (1230)
T ss_dssp HHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGG-GTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTT---CCT
T ss_pred HHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHH-HhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhc---CCC
Confidence 555555555667888899999999999876553321 123445566655554332 11233344555555543 110
Q ss_pred hhhhhhhchHHHHHHHhhhcc---chhhhHHHHHHHHHHHHhccCC----------------------------------
Q 001062 721 VGLAVRNKVLPQALALIKSSL---LQGQALVALQSFFAALVYSANT---------------------------------- 763 (1167)
Q Consensus 721 ~~~~~~~~~l~~l~~ll~~~~---l~~~~l~~~~~~~~~l~~~~~~---------------------------------- 763 (1167)
......+++.+++.+..+. .+......+..+++.++...++
T Consensus 769 --~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g 846 (1230)
T 1u6g_C 769 --NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVG 846 (1230)
T ss_dssp --TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhc
Confidence 0112233333321111000 0111122233333333221111
Q ss_pred ------ChHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 001062 764 ------SFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSAKQHLALLC 837 (1167)
Q Consensus 764 ------~~~~ll~~L~~~~~~~~~~~~~~~~a~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~ 837 (1167)
..+++.+.+...+.+. . +....+.+.++|.++.. ....+++.+++.+.+ .+..++..+.+
T Consensus 847 ~~~~~~~~~~l~~~~~~~l~~~--~----~~Vr~aAa~aLg~l~~~----~~~~~lp~ll~~l~~----~~~~~~~~l~a 912 (1230)
T 1u6g_C 847 HHIDLSGQLELKSVILEAFSSP--S----EEVKSAASYALGSISVG----NLPEYLPFVLQEITS----QPKRQYLLLHS 912 (1230)
T ss_dssp HHSCCCSCTHHHHHHHHGGGCS--C----HHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHS----CGGGHHHHHHH
T ss_pred ccCCCcccccHHHHHHHHhCCC--C----HHHHHHHHHHhHHHhcc----CHHHHHHHHHHHHhc----cchhhHHHHHH
Confidence 1123333333333111 1 22334445566665432 234567777777755 24568888999
Q ss_pred HhhhhccCCCCC----ccchHHHHHHhcCCChhhHHHHHHHHHHhhhhcCcccchHHHHHHhhc-ccchhHHHHHHHHHH
Q 001062 838 LGEIGRRKDLSS----HEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDN-QQKKQYLLLHSLKEV 912 (1167)
Q Consensus 838 Lgei~~~~~~~~----~~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~-~~~~~~~~l~aLkei 912 (1167)
|+++..+.+... .+.+++.+++.+.++++++|..++.|||.++..++..++|.+.+.+.+ ++..|...+.+++++
T Consensus 913 l~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~ 992 (1230)
T 1u6g_C 913 LKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFT 992 (1230)
T ss_dssp HHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGG
T ss_pred HHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999887654332 256788889999888899999999999999998888999999988876 456788999999998
Q ss_pred HhhccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCcc-------cchHHHHHhhcCCCh-------
Q 001062 913 IVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPA-------KLVPALKVRTTSSAA------- 978 (1167)
Q Consensus 913 ~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~~~-------~~lp~l~~~~~~~~~------- 978 (1167)
+...+. .+.+++..+++.++..+++++.++|.++..+|+.+++..|. .++|.|++.+...+.
T Consensus 993 ~~~~~~----~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~ 1068 (1230)
T 1u6g_C 993 ISDHPQ----PIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEM 1068 (1230)
T ss_dssp CCSSCC----THHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEE
T ss_pred HccCch----hhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeecc
Confidence 877665 34567788888888888888889999999999999988775 456666666544444
Q ss_pred -----------hhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhhhh
Q 001062 979 -----------FTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPEL 1047 (1167)
Q Consensus 979 -----------~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~~l~~l 1047 (1167)
..|..+..++-.++..+.+..+ +.++++.++.+|.|+ .++|..+..+|.++++.+|..+.++++.+
T Consensus 1069 gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~--~~~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~~~~~~~ 1145 (1230)
T 1u6g_C 1069 GPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLD--IFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRL 1145 (1230)
T ss_dssp TTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSC--HHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHHTTTTTT
T ss_pred CCcccccCCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHcccCch-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4666666666666665543332 567788888999995 89999999999999999999999999999
Q ss_pred hHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhh
Q 001062 1048 LPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDS 1094 (1167)
Q Consensus 1048 lp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~ 1094 (1167)
++.+.+.+..| +.-+..|+.+++-.|+.|+|++|+..|...
T Consensus 1146 ~~~~~~~l~~~------~~~~~~~qe~e~~~e~~r~~~r~~~~l~~~ 1186 (1230)
T 1u6g_C 1146 VEPLRATCTTK------VKANSVKQEFEKQDELKRSAMRAVAALLTI 1186 (1230)
T ss_dssp HHHHHHHHHCC------CCTTSCHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhhc------cccchhhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 99998876543 334578999999999999999999988754
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=8.6e-40 Score=420.64 Aligned_cols=683 Identities=13% Similarity=0.126 Sum_probs=532.0
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
.+..++..+.+.|+.+|++|..-|++.+.+.|..++++....+.+.++++|.|+++.||+.+..+++.+++.-.+..|+.
T Consensus 49 ~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ 128 (852)
T 4fdd_A 49 YLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD 128 (852)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTT
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHH
Confidence 34566666678999999999999999999888889999999999999999999999999999999999998877778999
Q ss_pred HHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccch
Q 001062 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1167)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l 164 (1167)
+++.|.+.+.+++..+|..+..+|..+++..+.. +.. ..+
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~-~~~---------------------------------------~~~ 168 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI-LDS---------------------------------------DVL 168 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH-HHH---------------------------------------CSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH-hch---------------------------------------hhh
Confidence 9999999888777777778888777777665541 000 001
Q ss_pred hHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh
Q 001062 165 SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV 241 (1167)
Q Consensus 165 ~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~ 241 (1167)
....+.+++.+++.++++++.+|..|+.+++.+....++.. ++.+++.++..+.+++ .+.|+.++.+++.+++..
T Consensus 169 ~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~--~~vr~~a~~~L~~l~~~~ 246 (852)
T 4fdd_A 169 DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEE--PEVRKNVCRALVMLLEVR 246 (852)
T ss_dssp SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHhC
Confidence 12356677778888888888999999999988887666553 5678888888777653 589999999999999999
Q ss_pred hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh--CCccccccHHHHHHHHHHhhccCCCCCCCCCCCCc
Q 001062 242 GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR--CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSD 319 (1167)
Q Consensus 242 ~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~--~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~ 319 (1167)
|+.+.||++.+++.++..+++ .++++|..|++++..+++. +.+.+.||++.+++.+++.+.|.+. | .
T Consensus 247 ~~~~~~~l~~l~~~l~~~~~~---~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~-------d-~ 315 (852)
T 4fdd_A 247 MDRLLPHMHNIVEYMLQRTQD---QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI-------D-I 315 (852)
T ss_dssp HHHHGGGHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHH-------H-H
T ss_pred HHHHHHHHHHHHHHHHHHccC---CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHh-------H-H
Confidence 999999999999999999887 7889999999998887753 2234679999999999999875310 0 0
Q ss_pred ccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHH
Q 001062 320 DEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVR 399 (1167)
Q Consensus 320 ~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~ 399 (1167)
..- +.|.++|+++||+...|.+|++|+.+++.+....|+ ..+..++|.+.+.+++.++.+|..++.+++.+.+
T Consensus 316 ~~~----~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~ 388 (852)
T 4fdd_A 316 ILL----KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 388 (852)
T ss_dssp HHH----HC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTT
T ss_pred HHh----cCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 000 000001111122226899999999999999987764 3456778888888888999999999999999875
Q ss_pred hhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCc-hhHhhhhhhHHHHHHhccc
Q 001062 400 QTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD-CLADHIGSLIPGIEKSLND 478 (1167)
Q Consensus 400 ~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~-~l~~~l~~l~~~l~~~l~d 478 (1167)
..+ ..+..+++.+++.+.+.++++++.+|..++.+++.++...++ ....|+..+++.+.+.+.|
T Consensus 389 ~~~---------------~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d 453 (852)
T 4fdd_A 389 GCM---------------QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 453 (852)
T ss_dssp TTH---------------HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC
T ss_pred cch---------------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC
Confidence 432 355678899999999999999999999999999999876643 3467899999999999987
Q ss_pred CCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchH
Q 001062 479 KSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ 558 (1167)
Q Consensus 479 ~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~ 558 (1167)
. +..++..++.+++.+++..+ ..+.||++.+++.+...+++...+....++.+++.++..+++.. .-.+|++
T Consensus 454 ~--~~~vr~~a~~aL~~l~~~~~-~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~-----~~~~~~~ 525 (852)
T 4fdd_A 454 S--NKRVQEAACSAFATLEEEAC-TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL-----NKPEYIQ 525 (852)
T ss_dssp S--SHHHHHHHHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGG-----CCHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHHhh-HhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhh-----ccHHHHH
Confidence 6 46899999999999998765 45889999999999999987666666667888888887776521 2245999
Q ss_pred HHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcC-------------------chhhH
Q 001062 559 PIYNAIMSRLTN-QDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGN-------------------EITRL 618 (1167)
Q Consensus 559 ~l~~~ll~~l~~-~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~-------------------e~~r~ 618 (1167)
.++|.+++.+.. .+.+.+++ .++.|++.++...|..+.+|++.+++.+++.++. ...+.
T Consensus 526 ~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~ 604 (852)
T 4fdd_A 526 MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMI 604 (852)
T ss_dssp HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHH
T ss_pred HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHH
Confidence 999998865532 23455665 7899999999999998889999988876655421 22567
Q ss_pred HHHHHHHHHhcCCCCCchhhHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCC
Q 001062 619 TAVKAFAVIAASPLHIDLTCVL--EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDS 696 (1167)
Q Consensus 619 ~a~~al~~i~~~~~~~~~~~~~--~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~ 696 (1167)
.++.+++.++... +.++.+|+ +.+++.+...+...+..+|..++.+++.++..++..+.+ .+..+++.+...+..+
T Consensus 605 ~~l~~l~~l~~~l-~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~l~~~lp~l~~~l~~~ 682 (852)
T 4fdd_A 605 VALDLLSGLAEGL-GGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKP-CIADFMPILGTNLNPE 682 (852)
T ss_dssp HHHHHHHHHHHHH-GGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHH-hHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHcCcc
Confidence 7889999888542 35677887 678888888887777899999999999999888765443 5677888888888777
Q ss_pred chhhHHHHHHHHHHHhhcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccC----CChHHHHHHH
Q 001062 697 DLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSAN----TSFDTLLDSL 772 (1167)
Q Consensus 697 d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~----~~~~~ll~~L 772 (1167)
+..+++.+..+++.++.. .+....++...+++.++.+++++..+....+.....++.++..++ ++.+.+++.+
T Consensus 683 ~~~v~~~a~~alg~i~~~---~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~ 759 (852)
T 4fdd_A 683 FISVCNNATWAIGEISIQ---MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPW 759 (852)
T ss_dssp SHHHHHHHHHHHHHHHHH---HGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH---hhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHH
Confidence 888999999999999887 555567889999999999998776555556666777777776552 4456666666
Q ss_pred hhcC
Q 001062 773 LSSA 776 (1167)
Q Consensus 773 ~~~~ 776 (1167)
+..+
T Consensus 760 ~~~l 763 (852)
T 4fdd_A 760 CTSL 763 (852)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6655
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=3.4e-37 Score=399.93 Aligned_cols=772 Identities=12% Similarity=0.093 Sum_probs=565.5
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHhhh-------
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD--VAGDVSGLAVKCLAPLVK------- 75 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d--~~~~Vr~~A~~~l~~l~~------- 75 (1167)
++..+|+.+.++|+++|..|...|.+.-. ...+.+...++..+.+ ++..||..|..+|...+.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~--------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAV--------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHh--------cChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhH
Confidence 57789999999999999999999965322 2346788888888876 468999999999987652
Q ss_pred --------hcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHH
Q 001062 76 --------KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRC 147 (1167)
Q Consensus 76 --------~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~ 147 (1167)
.+.++....+-+.|.+.+.+++..+ ..++.++..++....+.. ....++|.|++.+.+++.++.+|.
T Consensus 74 ~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~----~w~~ll~~l~~~l~~~~~~~~~r~ 148 (876)
T 1qgr_A 74 AQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKE 148 (876)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCccc----ccHHHHHHHHHHHhCCCCCHHHHH
Confidence 3444444556666888887776677 788888888775431111 124567777777776411478999
Q ss_pred HHHHHHHHHHHHh-ccchhHHHHHHHHHHhhhhcCC--hHHHHHHHHHHHHHHHhhcCHHH----H-HHHHHHHHHHhhc
Q 001062 148 ECLDILCDVLHKF-GNLMSNDHERLLSALLPQLSAN--QASVRKKSVSCIASLASSLSDDL----L-AKATIEVVRNLRS 219 (1167)
Q Consensus 148 ~~~~~L~~l~~~~-g~~l~~~~~~l~~~ll~~l~~~--~~~vrk~a~~~l~~l~~~~~~~~----~-~~l~~~l~~~l~~ 219 (1167)
.++.+|+.+++.+ +..+.++.+.+++.+...+.++ ++.+|..|+.|++.++...++.. + +.+++.+...+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 228 (876)
T 1qgr_A 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (876)
T ss_dssp HHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 9999999999886 4455678899999999999887 57999999999999887765432 1 2366666666654
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhhhhcchh-hhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC------------
Q 001062 220 KGAKPEMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLRCP------------ 286 (1167)
Q Consensus 220 ~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~-~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~------------ 286 (1167)
+ +.+.|..++.+++.++...+..+.||+. .+++.++..+.+ +++++|..+++++..++...+
T Consensus 229 ~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 303 (876)
T 1qgr_A 229 P--DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS---DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (876)
T ss_dssp S--SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHhHhhhhcccccc
Confidence 4 3578999999999999999999999999 999999998877 788999999999988876521
Q ss_pred ---------ccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q 001062 287 ---------RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1167)
Q Consensus 287 ---------~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li 357 (1167)
...+++++.+++.+++.+.... + |+||.+|++|++|+.+++.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~------~---------------------d~~~~~~~~r~~a~~~l~~l~ 356 (876)
T 1qgr_A 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQD------E---------------------NDDDDDWNPCKAAGVCLMLLA 356 (876)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC------S---------------------SCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCccchhHHHHHHHHHHHhHHHHHHhhccc------c---------------------cccccccHHHHHHHHHHHHHH
Confidence 1233466788888887775210 0 012336999999999999999
Q ss_pred hcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhcc
Q 001062 358 VSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE 437 (1167)
Q Consensus 358 ~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~ 437 (1167)
...++ .++..++|.+.+.+++.++.+|..++.+++.+....+ | ..+.++++.+++.+.+.+++
T Consensus 357 ~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-------------~-~~~~~~~~~~l~~l~~~l~d 419 (876)
T 1qgr_A 357 TCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-------------P-SQLKPLVIQAMPTLIELMKD 419 (876)
T ss_dssp HHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-------------H-HHHHHHHHHHHHHHHHHHTC
T ss_pred HHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC-------------H-HHHHHHHHHHHHHHHHHhCC
Confidence 87764 3466778888888889999999999999988764322 1 24567889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCchh--HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC-------------C
Q 001062 438 KSIKTKVGAFSVLRELVVVLPDCL--ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS-------------P 502 (1167)
Q Consensus 438 ~~~~~r~~~~~~l~~l~~~~~~~l--~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~-------------~ 502 (1167)
+++.+|..++.+++.++...+... .++++.+++.+...+.+. ..++..++.++..+++..+ .
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~ 496 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPAT 496 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence 999999999999999999887653 578999999999999873 6789999999999887532 2
Q ss_pred CchhhhhHhhHHHHHHHhcCC---chHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhc---------
Q 001062 503 PVFHPYIKALSSPVLAAVGER---YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN--------- 570 (1167)
Q Consensus 503 ~~~~~~l~~ll~~l~~~l~d~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~--------- 570 (1167)
+.+.||++.++|.+...+.+. ...++..++.+++.++...+. ++.+|+..+++.+++.+..
T Consensus 497 ~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 569 (876)
T 1qgr_A 497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK-------DCYPAVQKTTLVIMERLQQVLQMESHIQ 569 (876)
T ss_dssp CSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS-------TTHHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred hhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch-------hhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 458899999999999998754 457888999999999988754 4678999999999988864
Q ss_pred CCCC----HHHHHHHHHHHHHHHHhcC-cccccchhhhHHHHHHhhcCc----hhhHHHHHHHHHHhcCCCCCchhhHHH
Q 001062 571 QDQD----QEVKECAISCMGLVISTFG-DNLGAELPACLPVLVDRMGNE----ITRLTAVKAFAVIAASPLHIDLTCVLE 641 (1167)
Q Consensus 571 ~d~~----~~vr~~Ai~alg~l~~~~g-~~l~~~~~~~l~~L~~~L~~e----~~r~~a~~al~~i~~~~~~~~~~~~~~ 641 (1167)
++.+ +++|..++.+++.++...| ..+.++++.++|.++..+++. .+|..++.+++.++.. .+.++.+|++
T Consensus 570 ~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~-~~~~~~~~~~ 648 (876)
T 1qgr_A 570 STSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV-LGGEFLKYME 648 (876)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH-HGGGGGGGHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 2333 4678899999999999999 888899999999999988765 4688999999999854 2456889999
Q ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCC--CchhhHHHHHHHHHHHhhcccCC
Q 001062 642 HVIAELTAFLRKA-NRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISD--SDLHMTALALELCCTLMADKRSS 718 (1167)
Q Consensus 642 ~~l~~L~~~L~~~-~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--~d~~~~~~al~~l~~l~~~~~~~ 718 (1167)
.+++.+...+... +..+|..++.+++.++...+..+.+ .+..+++.+...+++ .+..++..++.+++.++.. .
T Consensus 649 ~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~---~ 724 (876)
T 1qgr_A 649 AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP-FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALA---I 724 (876)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHH---h
Confidence 9999999999987 8899999999999999988754432 456777777777765 4567899999999999886 4
Q ss_pred CchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccCCChHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHH
Q 001062 719 PNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVA 798 (1167)
Q Consensus 719 p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~ll~~L~~~~~~~~~~~~~~~~a~~~~a~~i~ 798 (1167)
+.....+.+.++|.+.+.+.... ...+ +... .+...+...+ ..++..+.++++
T Consensus 725 g~~~~~~l~~~~~~l~~~~~~~~-~~~d-~~~~---------------~~~~~~r~~~----------~~~~~~i~~~~~ 777 (876)
T 1qgr_A 725 GGEFKKYLEVVLNTLQQASQAQV-DKSD-YDMV---------------DYLNELRESC----------LEAYTGIVQGLK 777 (876)
T ss_dssp GGGGGGGHHHHHHHHHHHHTCCC-CTTC-HHHH---------------HHHHHHHHHH----------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhccC-CCCC-hHHH---------------HHHHHHHHHH----------HHHHHHHHHHHc
Confidence 44455566777777665553221 0000 0000 0000000000 111222222222
Q ss_pred HHHh------hcCCcchhHHHHHHHHHhhcCCCC-chHHHHHHHHHHhhhhccCCC-C---C-ccchHHHHHH-hcCCCh
Q 001062 799 VLCL------AAGDQKCSSTVKMLTDILKDDSST-NSAKQHLALLCLGEIGRRKDL-S---S-HEHIENVIIE-SFQSPF 865 (1167)
Q Consensus 799 ~~~~------~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~lal~~Lgei~~~~~~-~---~-~~~~~~~l~~-~l~~~~ 865 (1167)
..+. ..-..+++.+++ ++..+... .. +...|..++.+||.++...+. . + .+.+.+.++. .+++++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~i~~-~l~~~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~ 855 (876)
T 1qgr_A 778 GDQENVHPDVMLVQPRVEFILS-FIDHIAGD-EDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKT 855 (876)
T ss_dssp CSSSSCCGGGGGSGGGHHHHHH-HHHHHHTC-SCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSC
T ss_pred cCcccccchHHHHHHHHHHHHH-HHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCC
Confidence 1100 000012233332 22222121 11 567788899999999887654 2 1 2456667777 888899
Q ss_pred hhHHHHHHHHHHhhhhc
Q 001062 866 EEIKSAASYALGNIAVG 882 (1167)
Q Consensus 866 e~vr~aaa~aLG~l~~~ 882 (1167)
+++|.+|+.|+|.++.-
T Consensus 856 ~~~r~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 856 NKAKTLARWATKELRKL 872 (876)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh
Confidence 99999999999988753
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=7.1e-37 Score=396.08 Aligned_cols=660 Identities=13% Similarity=0.136 Sum_probs=527.2
Q ss_pred CchHHHHHHHHHh-cCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHhhh--
Q 001062 1 MANLQMAAILEKI-TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD--VAGDVSGLAVKCLAPLVK-- 75 (1167)
Q Consensus 1 ~~~~~i~~ll~~~-~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d--~~~~Vr~~A~~~l~~l~~-- 75 (1167)
|-..++..+++.+ .++|++.|.+|...|.+.-+. ..+.+...++..+.+ .+..||..|...|...+.
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~ 72 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSND--------NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK 72 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhh--------CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCc
Confidence 6667899999999 999999999999999873321 134567777777765 478999999999998752
Q ss_pred -------------h-cChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHhhhccC
Q 001062 76 -------------K-VSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEV-TTSSLAQSIHTSLTPQLTKGITLKD 140 (1167)
Q Consensus 76 -------------~-~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~-~~~~~~~~~~~~i~p~Ll~~l~~~~ 140 (1167)
. ++++....+-+.|++.+.+++..+|..++.+|..+.... |.. . ...++|.|++.+.+++
T Consensus 73 w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~-~----w~~ll~~L~~~l~~~~ 147 (861)
T 2bpt_A 73 DSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG-A----WPELMKIMVDNTGAEQ 147 (861)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT-C----CHHHHHHHHHHTSTTS
T ss_pred ChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCccc-c----cHHHHHHHHHHHhcCC
Confidence 2 666666677888888888888888999999999887653 311 1 2457788888877642
Q ss_pred CChhHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHhhhhcCC--hHHHHHHHHHHHHHHHhhcCHHH-----HHHHH
Q 001062 141 MNTEIRCECLDILCDVLHKFGNL---MSNDHERLLSALLPQLSAN--QASVRKKSVSCIASLASSLSDDL-----LAKAT 210 (1167)
Q Consensus 141 ~~~~v~~~~~~~L~~l~~~~g~~---l~~~~~~l~~~ll~~l~~~--~~~vrk~a~~~l~~l~~~~~~~~-----~~~l~ 210 (1167)
++.+|..++.+++.+++.++.. +.++.+.+++.+...+.++ ++.||..|+.|++.+...+++.. .+.++
T Consensus 148 -~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll 226 (861)
T 2bpt_A 148 -PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLM 226 (861)
T ss_dssp -CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHH
Confidence 5789999999999999988765 5678899999999999887 67999999999999876654331 24466
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchh-hhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh-----
Q 001062 211 IEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLR----- 284 (1167)
Q Consensus 211 ~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~-~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~----- 284 (1167)
+.+...+.+++ .+.|+.++.+++.++...|..|.||+. .+++.+...+.+ .++++|..++.++..++..
T Consensus 227 ~~l~~~~~~~~--~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~vr~~a~~~l~~l~~~~~~~~ 301 (861)
T 2bpt_A 227 QVVCEATQAED--IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS---PNDKVASMTVEFWSTICEEEIDIA 301 (861)
T ss_dssp HHHHHHHTCSC--HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHHhhh
Confidence 66666665543 588999999999999999999999999 999999988877 7899999999999998876
Q ss_pred ------------CCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHH
Q 001062 285 ------------CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKC 352 (1167)
Q Consensus 285 ------------~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~ 352 (1167)
++..+.++++.+++.++..+.+.. + |++|..|.+|++|..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~------~---------------------d~~d~~~~~r~~a~~~ 354 (861)
T 2bpt_A 302 YELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN------E---------------------DPEDDDWNVSMSAGAC 354 (861)
T ss_dssp HHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC------C---------------------C-CCCCCHHHHHHHHH
T ss_pred hhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc------c---------------------ccccccCcHHHHHHHH
Confidence 233455777888998888775210 0 0012359999999999
Q ss_pred HHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHH
Q 001062 353 LAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSIN 432 (1167)
Q Consensus 353 l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~ 432 (1167)
++.+....++ ..+..++|.+.+.+++.++.+|..++.+++.+.+..+ + ..+.++++.+++.+.
T Consensus 355 L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-------------~-~~~~~~l~~il~~l~ 417 (861)
T 2bpt_A 355 LQLFAQNCGN---HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD-------------K-VQRTYYVHQALPSIL 417 (861)
T ss_dssp HHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-------------H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHccH---hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC-------------H-HHHHHHHHHHHHHHH
Confidence 9999887764 3455677777777888899999999999998864321 1 356778899999999
Q ss_pred HHhccCChhhHHHHHHHHHHHHHhcCchh--HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC---CCchhh
Q 001062 433 RQLREKSIKTKVGAFSVLRELVVVLPDCL--ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS---PPVFHP 507 (1167)
Q Consensus 433 ~~L~~~~~~~r~~~~~~l~~l~~~~~~~l--~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~---~~~~~~ 507 (1167)
+.++++++.+|..++.+++.++...+..+ .++++.++|.+.+.+.|. ..++..++..+..+++..+ +..+.+
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~ 494 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIYN 494 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGG
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 99999999999999999999998776554 568999999999999764 5789999999999888654 367889
Q ss_pred hhHhhHHHHHHHhcC--CchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcC-------------C
Q 001062 508 YIKALSSPVLAAVGE--RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ-------------D 572 (1167)
Q Consensus 508 ~l~~ll~~l~~~l~d--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~-------------d 572 (1167)
|++.+++.+...+.+ .+.+++..++.+++.++...+. .+.+|+..++|.+++.+... +
T Consensus 495 ~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~ 567 (861)
T 2bpt_A 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD-------TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG-------GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch-------hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHH
Confidence 999999999999974 4478999999999999987654 46789999999998888632 1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCc---hhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q 001062 573 QDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE---ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTA 649 (1167)
Q Consensus 573 ~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e---~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~ 649 (1167)
...++|..++.+++.++...|..+.++++.+++.+...+++. ..|..++.+++.++... +.++.+|++.+++.+..
T Consensus 568 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~-~~~~~~~l~~i~~~l~~ 646 (861)
T 2bpt_A 568 SLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASL-GKGFEKYLETFSPYLLK 646 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Confidence 234688899999999999999988899999999999887543 56889999999888542 45678999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCC--chhhHHHHHHHHHHHhhcccCCCchhhhhhh
Q 001062 650 FLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDS--DLHMTALALELCCTLMADKRSSPNVGLAVRN 727 (1167)
Q Consensus 650 ~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~--d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~ 727 (1167)
.+...+..+|..++.+++.++...+..+. +.+..+++.+...+.++ |..++..++.+++.++.. .+.....|.+
T Consensus 647 ~l~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~---~~~~~~~~l~ 722 (861)
T 2bpt_A 647 ALNQVDSPVSITAVGFIADISNSLEEDFR-RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN---IGADFIPYLN 722 (861)
T ss_dssp HHHCTTSHHHHHHHHHHHHHHHHTGGGGH-HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH---HGGGGHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHHhchhcc-chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH---hhhhHHHHHH
Confidence 99777888999999999999998775332 24566677666666554 378999999999999987 5666777888
Q ss_pred chHHHHHHHhh
Q 001062 728 KVLPQALALIK 738 (1167)
Q Consensus 728 ~~l~~l~~ll~ 738 (1167)
.++|.++..+.
T Consensus 723 ~~l~~l~~~~~ 733 (861)
T 2bpt_A 723 DIMALCVAAQN 733 (861)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988776
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.5e-35 Score=383.63 Aligned_cols=702 Identities=13% Similarity=0.179 Sum_probs=534.6
Q ss_pred HHHHHhcC--CChhHHhHhHHHHHHHhccc-----------ccC-CChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Q 001062 8 AILEKITG--KDKDFRYMATSDLLNELNKE-----------SFK-ADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPL 73 (1167)
Q Consensus 8 ~ll~~~~~--~d~d~R~mAl~dL~~~l~~~-----------~~~-~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l 73 (1167)
.+++-+.+ .++.+|++|..-|++.+.+. |.. ++++....+.+.+++.|.++++.||+.+..+++.+
T Consensus 43 ~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i 122 (861)
T 2bpt_A 43 LSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAI 122 (861)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 44455544 57899999999999988654 233 77888889999999999999999999999999999
Q ss_pred hhhcCh-hhHHHHHHHHHHHhcCC-CcchhcHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHHHhhhccCCChhHHHHHH
Q 001062 74 VKKVSE-PRVVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSS-LAQSIHTSLTPQLTKGITLKDMNTEIRCECL 150 (1167)
Q Consensus 74 ~~~~~~-~~~~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~~~~~~~~~-~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~ 150 (1167)
+....+ ..|+.+++.|.+.+.++ ++..|..+..+|..+++.++++. ...+....++|.+...+.+++.++.||..++
T Consensus 123 ~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al 202 (861)
T 2bpt_A 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAAL 202 (861)
T ss_dssp HHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred HHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 987544 58999999999999887 77889999999999998876521 1345677888999988887644688999999
Q ss_pred HHHHHHHHHhccchh--HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HHH-HHHHHHHHHhhcCCCCh
Q 001062 151 DILCDVLHKFGNLMS--NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLA-KATIEVVRNLRSKGAKP 224 (1167)
Q Consensus 151 ~~L~~l~~~~g~~l~--~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~-~l~~~l~~~l~~~~~~~ 224 (1167)
.+++.++..++..+. ..++.+++.+...+.++++.+|+.++.+++.++...++. ++. .+++.+...+.+. +.
T Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~ 280 (861)
T 2bpt_A 203 NALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP--ND 280 (861)
T ss_dssp HHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cH
Confidence 999998766554332 234568888888888888999999999999999876542 455 6777777777654 35
Q ss_pred HHHHHHHHHHHHHHHHhh-----------------hhhhcchhhhHHHHHHHhhhcC----CCChhHHHHHHHHHHHHHH
Q 001062 225 EMIRTNIQMVGALSRAVG-----------------YRFGPHLGDTVPVLIDYCTSAS----ENDEELREYSLQALESFLL 283 (1167)
Q Consensus 225 ~~r~~~~~~l~~l~~~~~-----------------~~~~p~l~~lvp~l~~~l~~~~----e~~~e~re~al~~l~~l~~ 283 (1167)
+.|..++.+|+.+++..+ ..+.++++.++|.++..+.+.+ |++..+|..+..++..++.
T Consensus 281 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~ 360 (861)
T 2bpt_A 281 KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQ 360 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHH
Confidence 889999999999988642 2346678899999999887632 1234689999999999998
Q ss_pred hCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCC-h
Q 001062 284 RCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP-E 362 (1167)
Q Consensus 284 ~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~-~ 362 (1167)
.++. ..++.+++.+.+.+. +..|++|++|+.+++.++.... +
T Consensus 361 ~~~~---~~~~~l~~~l~~~l~----------------------------------~~~~~~r~~a~~~l~~i~~~~~~~ 403 (861)
T 2bpt_A 361 NCGN---HILEPVLEFVEQNIT----------------------------------ADNWRNREAAVMAFGSIMDGPDKV 403 (861)
T ss_dssp HHGG---GGHHHHHHHHHHHTT----------------------------------CSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred HccH---hHHHHHHHHHHHHcC----------------------------------CCChhHHHHHHHHHHHHHcCCCHH
Confidence 8774 345667777666553 1259999999999999998764 6
Q ss_pred hhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhh
Q 001062 363 MLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKT 442 (1167)
Q Consensus 363 ~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~ 442 (1167)
.+.+++..++|.+++.++|.++.||..+..+++.+....++.. .+ .++++.+++.+.+.+.++ +++
T Consensus 404 ~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---------~~----~~~~~~~l~~l~~~l~~~-~~v 469 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI---------DP----QQHLPGVVQACLIGLQDH-PKV 469 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS---------CT----TTTHHHHHHHHHHHHTSC-HHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc---------CC----HHHHHHHHHHHHHHhccC-hHH
Confidence 6778889999999999999999999999999998887654200 00 235677777777788775 889
Q ss_pred HHHHHHHHHHHHHhcC----chhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHH
Q 001062 443 KVGAFSVLRELVVVLP----DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLA 518 (1167)
Q Consensus 443 r~~~~~~l~~l~~~~~----~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~ 518 (1167)
|..++.++..+++.++ ..+.+|++.+++.+.+.+.+...+..+|..++.+++.++...+ ..+.+|+..++|.+..
T Consensus 470 ~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~-~~~~~~~~~l~~~l~~ 548 (861)
T 2bpt_A 470 ATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT-DTVAETSASISTFVMD 548 (861)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc-hhhHHHHHHHHHHHHH
Confidence 9999999999988764 6678999999999999998543346789999999999998765 5678899999999988
Q ss_pred HhcC---------------CchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 001062 519 AVGE---------------RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAIS 583 (1167)
Q Consensus 519 ~l~d---------------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~ 583 (1167)
.+.+ ....++..++.+++.++..+++ .+.||++.+++.++..++..+.+ .+|+.++.
T Consensus 549 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~~~~~~-~v~~~~~~ 620 (861)
T 2bpt_A 549 KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-------SVEPVADMLMGLFFRLLEKKDSA-FIEDDVFY 620 (861)
T ss_dssp HHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-------GTGGGHHHHHHHHHHHHHSTTGG-GTHHHHHH
T ss_pred HHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHccCCCC-cHHHHHHH
Confidence 8763 2456788899999999988765 47899999999999999754322 79999999
Q ss_pred HHHHHHHhcCcccccchhhhHHHHHHhhcC--chhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhh--HHHH
Q 001062 584 CMGLVISTFGDNLGAELPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKAN--RALR 659 (1167)
Q Consensus 584 alg~l~~~~g~~l~~~~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~--~~lr 659 (1167)
+++.++...|..+.+|++.++|.+.+.+++ ..+|..++.+++.++... +.++.+|++.+++.+...+.+++ +.+|
T Consensus 621 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~vr 699 (861)
T 2bpt_A 621 AISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL-EEDFRRYSDAMMNVLAQMISNPNARRELK 699 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHCTTCCTTHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh-chhccchHHHHHHHHHHHhCCccccHhhh
Confidence 999999999999999999999999998853 347888999999988553 35688999999999999998765 8899
Q ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCC----c-------hhhHHHHHHHHHHHhhcccCCC---chhhhh
Q 001062 660 QATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDS----D-------LHMTALALELCCTLMADKRSSP---NVGLAV 725 (1167)
Q Consensus 660 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~----d-------~~~~~~al~~l~~l~~~~~~~p---~~~~~~ 725 (1167)
..++.+++.++...+..+.+ .++.+++.+.+.+..+ | ..++..++++++.++.. .+ .....+
T Consensus 700 ~~~~~~l~~l~~~~~~~~~~-~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~---l~~~~~~~~~~ 775 (861)
T 2bpt_A 700 PAVLSVFGDIASNIGADFIP-YLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAG---LHDKPEALFPY 775 (861)
T ss_dssp HHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHH---TTTCHHHHGGG
T ss_pred HHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHH---HccCHHHHHHH
Confidence 99999999999988764432 3455666655555421 1 24678889999998876 43 223344
Q ss_pred hhchHHHHHHHhhhcc-c-hhhhHHHHHHHHHHHHhcc-C----CChH-HHHHHHhhcC
Q 001062 726 RNKVLPQALALIKSSL-L-QGQALVALQSFFAALVYSA-N----TSFD-TLLDSLLSSA 776 (1167)
Q Consensus 726 ~~~~l~~l~~ll~~~~-l-~~~~l~~~~~~~~~l~~~~-~----~~~~-~ll~~L~~~~ 776 (1167)
.+.+++.+...+.++. - +.....+...+++.++... + +.++ .+++.|+..+
T Consensus 776 ~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l 834 (861)
T 2bpt_A 776 VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRT 834 (861)
T ss_dssp HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHH
Confidence 5555555555443210 0 1112234555566665532 2 2344 5566666544
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.4e-33 Score=362.79 Aligned_cols=730 Identities=12% Similarity=0.130 Sum_probs=540.4
Q ss_pred CChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc
Q 001062 39 ADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS 118 (1167)
Q Consensus 39 ~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~ 118 (1167)
.++....++...+-.. .+|++++|++|.+.|..+-. .++.+ ..+-.+.....+.+..+|..|+..||+.+...=.
T Consensus 7 ~~~~~~~~l~~~l~~~-~s~d~~~r~~Ae~~L~~~~~--~p~~~-~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~- 81 (852)
T 4fdd_A 7 PDEQGLQQILQLLKES-QSPDTTIQRTVQQKLEQLNQ--YPDFN-NYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ- 81 (852)
T ss_dssp CCHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHHHHTT--SHHHH-HHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-
T ss_pred CChhhHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHh--CCCHH-HHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC-
Confidence 3445566665555444 58899999999999986532 12222 2333333333345567899999999998854211
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHH
Q 001062 119 SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLA 198 (1167)
Q Consensus 119 ~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~ 198 (1167)
.+.......|.+.+++.|.++ ++.+|..+..+++.+++..+. ..|+++++.+...++++++.+|+.++.+++.++
T Consensus 82 ~~~~~~~~~ik~~ll~~l~~~--~~~vr~~~a~~i~~ia~~~~~---~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 82 NFPNGVTDFIKSECLNNIGDS--SPLIRATVGILITTIASKGEL---QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKIC 156 (852)
T ss_dssp GCCHHHHHHHHHHHHTTTTCS--SHHHHHHHHHHHHHHHHHTTT---TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcCc---cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 122334456777788888764 578999999999999987643 578999999999999998999999999999999
Q ss_pred hhcCHHH--------HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhH
Q 001062 199 SSLSDDL--------LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEEL 270 (1167)
Q Consensus 199 ~~~~~~~--------~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~ 270 (1167)
...++.. +..+++.+++.+++++ ..+|..++.+++.++...+..+.++++.++|.++..+++ +++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~--~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d---~~~~v 231 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSS--PKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGD---EEPEV 231 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS--HHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTC---CCHHH
T ss_pred HHhHHHhchhhhcchHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCC---CCHHH
Confidence 8776542 5678888888887654 589999999999888777777888999999999998877 88999
Q ss_pred HHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHH
Q 001062 271 REYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAA 350 (1167)
Q Consensus 271 re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~ 350 (1167)
|..+++++..++..+|..+.||++.+++.+++.++. ....||..|+
T Consensus 232 r~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~----------------------------------~~~~vr~~a~ 277 (852)
T 4fdd_A 232 RKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD----------------------------------QDENVALEAC 277 (852)
T ss_dssp HHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC----------------------------------SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC----------------------------------CcHHHHHHHH
Confidence 999999999999999999999999999999887641 0137999999
Q ss_pred HHHHHHHhcC--ChhhHHHHHHHhhHHHhhh-----------cc-----------CChhHHHHHHHHHHHHHHhhCCCCC
Q 001062 351 KCLAALIVSR--PEMLSKLYEEACPKLIDRF-----------KE-----------REENVKMDVFNTFIELVRQTGNVTK 406 (1167)
Q Consensus 351 ~~l~~li~~~--~~~l~~~~~~i~p~L~~~l-----------~d-----------~~~~vr~~~~~~l~~l~~~~~~~~~ 406 (1167)
..+..+.+.. .+.+.+++..++|.+++.+ .| .++++|..+..+++.+.+..+
T Consensus 278 e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~---- 353 (852)
T 4fdd_A 278 EFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR---- 353 (852)
T ss_dssp HHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG----
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc----
Confidence 9998877532 1234456777888887776 34 456789999999998887653
Q ss_pred CccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHH
Q 001062 407 GQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLK 486 (1167)
Q Consensus 407 ~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~ 486 (1167)
...+|.+++.+...+.+++|++|.+++.+++.+++..+..+.++++.++|.+...++|. +..+|
T Consensus 354 --------------~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~--~~~Vr 417 (852)
T 4fdd_A 354 --------------DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK--KALVR 417 (852)
T ss_dssp --------------GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS--SHHHH
T ss_pred --------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--CHHHH
Confidence 23567888888889999999999999999999998887778889999999999999987 57899
Q ss_pred HHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHH
Q 001062 487 IEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMS 566 (1167)
Q Consensus 487 ~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~ 566 (1167)
..++.+++.+.+..++....+|+..+++.+...++|.+++++..|+.+++.+++..++ .+.||++.+++.++.
T Consensus 418 ~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~-------~l~~~l~~ll~~L~~ 490 (852)
T 4fdd_A 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT-------ELVPYLAYILDTLVF 490 (852)
T ss_dssp HHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG-------GGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH-------hhHhHHHHHHHHHHH
Confidence 9999999998875544456778999999999999999999999999999999988755 478999999999999
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHhcCccccc--chhhhHHHHHHh---hcCch-hhHHHHHHHHHHhcCCCCCchhhHH
Q 001062 567 RLTNQDQDQEVKECAISCMGLVISTFGDNLGA--ELPACLPVLVDR---MGNEI-TRLTAVKAFAVIAASPLHIDLTCVL 640 (1167)
Q Consensus 567 ~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~--~~~~~l~~L~~~---L~~e~-~r~~a~~al~~i~~~~~~~~~~~~~ 640 (1167)
.+.+ .+.+....++.+++.++...|..+.. |++.++|.+++. +++.. .-..++++++.++... +..+.||+
T Consensus 491 ~l~~--~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~-g~~~~~~~ 567 (852)
T 4fdd_A 491 AFSK--YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATAL-QSGFLPYC 567 (852)
T ss_dssp HHHH--CCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHH-GGGGHHHH
T ss_pred HHHH--hChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-hHhHHHHH
Confidence 8864 34566667899999999888876653 889999998854 33221 1236788888888543 34678888
Q ss_pred HHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHHHHHhCCCCChhhH--HHHHHHHhhhcCCCchhhH
Q 001062 641 EHVIAELTAFLRKA-----------------NRALRQATLGTMNSLVVAYGDKIGASAY--EVIIVELSTLISDSDLHMT 701 (1167)
Q Consensus 641 ~~~l~~L~~~L~~~-----------------~~~lr~~al~~L~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~~d~~~~ 701 (1167)
+.+++.+...++.. +...+..++.+++.++...+..+.+ .+ ..+++.+...+.+.+..++
T Consensus 568 ~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~-~~~~~~~~~~l~~~l~~~~~~vr 646 (852)
T 4fdd_A 568 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ-LVARSNILTLMYQCMQDKMPEVR 646 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHH-HHHTCCHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHH-HhcCCcHHHHHHHHhCCCChhHH
Confidence 88888776666532 4668999999999999988754321 12 3456666666777778899
Q ss_pred HHHHHHHHHHhhcccCCCchhhhhhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccCCChHHHHHHHhhcCCCCCC
Q 001062 702 ALALELCCTLMADKRSSPNVGLAVRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQ 781 (1167)
Q Consensus 702 ~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~ll~~L~~~~~~~~~ 781 (1167)
+.++.+++.+++. .+.....+.+.++|.+.+.+.... .
T Consensus 647 ~~a~~~l~~l~~~---~~~~~~~~l~~~lp~l~~~l~~~~--~------------------------------------- 684 (852)
T 4fdd_A 647 QSSFALLGDLTKA---CFQHVKPCIADFMPILGTNLNPEF--I------------------------------------- 684 (852)
T ss_dssp HHHHHHHHHHHHH---CGGGTGGGHHHHHHHHHHTCCTTS--H-------------------------------------
T ss_pred HHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHcCccc--h-------------------------------------
Confidence 9999999999987 565555566666666655442110 0
Q ss_pred CcchhhhhhHHHHHHHHHHHhhcCC---cchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCC---CCccchHH
Q 001062 782 SGGVAKQAMYSIAQCVAVLCLAAGD---QKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDL---SSHEHIEN 855 (1167)
Q Consensus 782 ~~~~~~~a~~~~a~~i~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~---~~~~~~~~ 855 (1167)
....+.+.++|.++...++ .+...+++.++..+++ +......+--++.++|.+|...+- ++.+++.+
T Consensus 685 ------~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~-~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~ 757 (852)
T 4fdd_A 685 ------SVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR-PNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIR 757 (852)
T ss_dssp ------HHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCC-CCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHH
Confidence 0011122223333221111 1345666667666654 233444555677788888877421 22456778
Q ss_pred HHHHhcCC-ChhhHHHHHHHHHHhhhhcCcccch---HHHHHHhhc
Q 001062 856 VIIESFQS-PFEEIKSAASYALGNIAVGNLSKFL---PFILDQIDN 897 (1167)
Q Consensus 856 ~l~~~l~~-~~e~vr~aaa~aLG~l~~~~~~~~l---p~l~~~l~~ 897 (1167)
.++..+.+ .+.+.|..|..+|+.+...||...+ +.++..+.+
T Consensus 758 ~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~ 803 (852)
T 4fdd_A 758 PWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVAS 803 (852)
T ss_dssp HHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHT
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHh
Confidence 88888864 4566799999999999999987654 445566655
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2.8e-34 Score=372.50 Aligned_cols=647 Identities=13% Similarity=0.161 Sum_probs=500.7
Q ss_pred HHHHHHHHhcCC--ChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHhhhhcChh
Q 001062 5 QMAAILEKITGK--DKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV--AGDVSGLAVKCLAPLVKKVSEP 80 (1167)
Q Consensus 5 ~i~~ll~~~~~~--d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~--~~~Vr~~A~~~l~~l~~~~~~~ 80 (1167)
-+..+++.+.++ |+++|..|+..|......-....-....+.+++.+++.+.|+ +.+||..|++|++.++..++..
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888 999999999999887764110001245688899999999987 7899999999999988655422
Q ss_pred ----hH-HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHH-HHHHHHHHhhhccCCChhHHHHHHHHHH
Q 001062 81 ----RV-VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLKDMNTEIRCECLDILC 154 (1167)
Q Consensus 81 ----~~-~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~-~i~p~Ll~~l~~~~~~~~v~~~~~~~L~ 154 (1167)
.+ ..+++.+...+.+.+.++|..++.+|..+++..+. ...+++. .+++.++..+.+. ++.+|..+++++.
T Consensus 209 ~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~--~~~v~~~al~~l~ 284 (876)
T 1qgr_A 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ--YMETYMGPALFAITIEAMKSD--IDEVALQGIEFWS 284 (876)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG--GCHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHH
Confidence 11 24677777777677778899999999999887765 3455666 8888888877654 5889999999999
Q ss_pred HHHHHhc---------------------cchhHHHHHHHHHHhhhhc-------CChHHHHHHHHHHHHHHHhhcCHHHH
Q 001062 155 DVLHKFG---------------------NLMSNDHERLLSALLPQLS-------ANQASVRKKSVSCIASLASSLSDDLL 206 (1167)
Q Consensus 155 ~l~~~~g---------------------~~l~~~~~~l~~~ll~~l~-------~~~~~vrk~a~~~l~~l~~~~~~~~~ 206 (1167)
.+++... ....++.+.+++.+++.+. ++++.+|+.|..+++.++...++..+
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 364 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhH
Confidence 9987531 1122345777888877774 34569999999999999999887778
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh-hhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC
Q 001062 207 AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG-YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1167)
Q Consensus 207 ~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~-~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~ 285 (1167)
..+++.+...+.+++| ..|..++.+++.++..++ +.+.+|++.++|.++..+++ .++.+|..|+++++.++..+
T Consensus 365 ~~~l~~l~~~l~~~~~--~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d---~~~~vr~~a~~~l~~~~~~~ 439 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD---PSVVVRDTAAWTVGRICELL 439 (876)
T ss_dssp HHHHHHHHHHTTCSSH--HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccCCCh--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHhC
Confidence 8899988888887755 789999999999998776 66889999999999999988 78999999999999999998
Q ss_pred Cccc--cccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCC--
Q 001062 286 PRDI--SSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP-- 361 (1167)
Q Consensus 286 ~~~~--~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~-- 361 (1167)
+..+ .+|++.+++.+++.+.. .++||..|+.+++.++...+
T Consensus 440 ~~~~~~~~~l~~~l~~l~~~l~~-----------------------------------~~~v~~~a~~al~~l~~~~~~~ 484 (876)
T 1qgr_A 440 PEAAINDVYLAPLLQCLIEGLSA-----------------------------------EPRVASNVCWAFSSLAEAAYEA 484 (876)
T ss_dssp GGGTSSTTTHHHHHHHHHHHTTS-----------------------------------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhcccHHHHHHHHHHHHHHHcC-----------------------------------CHHHHHHHHHHHHHHHHHhhhc
Confidence 8764 58999999998887641 15899999999999987643
Q ss_pred ------------hhhHHHHHHHhhHHHhhhccC---ChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHH
Q 001062 362 ------------EMLSKLYEEACPKLIDRFKER---EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSK 426 (1167)
Q Consensus 362 ------------~~l~~~~~~i~p~L~~~l~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~ 426 (1167)
+.+.+++..++|.|++.+.+. +.++|..++++++.+++..+.. ....+...+|.
T Consensus 485 ~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~-----------~~~~~~~l~~~ 553 (876)
T 1qgr_A 485 ADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD-----------CYPAVQKTTLV 553 (876)
T ss_dssp TSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST-----------THHHHHHHHHH
T ss_pred cccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh-----------hHHHHHHHHHH
Confidence 336678899999998887654 4589999999999999876521 11233444444
Q ss_pred HHHHHHHHh-------ccCC----hhhHHHHHHHHHHHHHhcC-chhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHH
Q 001062 427 IVKSINRQL-------REKS----IKTKVGAFSVLRELVVVLP-DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTR 494 (1167)
Q Consensus 427 l~~~l~~~L-------~~~~----~~~r~~~~~~l~~l~~~~~-~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~ 494 (1167)
+++.+...+ .+.+ +.+|..++.++..++...+ ..+.+|++.++|.+.+.+++......++..++.+++
T Consensus 554 l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~ 633 (876)
T 1qgr_A 554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVS 633 (876)
T ss_dssp HHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHH
Confidence 444444332 1111 3457778889999999999 889999999999999999876322468999999999
Q ss_pred HHhccCCCCchhhhhHhhHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCC
Q 001062 495 LVLSSHSPPVFHPYIKALSSPVLAAVGER-YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQ 573 (1167)
Q Consensus 495 ~l~~~~~~~~~~~~l~~ll~~l~~~l~d~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~ 573 (1167)
.++...+ ..|.+|++.++|.+...+.+. ++.++..|+.+++.++..+++ .+.||++.+++.+++.+.+.+.
T Consensus 634 ~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~~~i~~~l~~~l~~~~~ 705 (876)
T 1qgr_A 634 TLVEVLG-GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS-------NIIPFCDEVMQLLLENLGNENV 705 (876)
T ss_dssp HHHHHHG-GGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG-------GGHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHhCCccc
Confidence 9988654 578999999999999999886 789999999999999988764 5789999999999999975445
Q ss_pred CHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCc-------------hhhHHHHHHHHHHhcCCC--------
Q 001062 574 DQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE-------------ITRLTAVKAFAVIAASPL-------- 632 (1167)
Q Consensus 574 ~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e-------------~~r~~a~~al~~i~~~~~-------- 632 (1167)
+.++|..++.++|.++...|..+.++++.++|.+.+.++.. ..|..++.+++.++....
T Consensus 706 ~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~ 785 (876)
T 1qgr_A 706 HRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHP 785 (876)
T ss_dssp CGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCG
T ss_pred cHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence 67899999999999999999999999999999998877532 467788888887763210
Q ss_pred -CCchhhHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHhCC-CCChhhHHHHHHHHhh-hcCCCchhhHHHHHHH
Q 001062 633 -HIDLTCVLEHVIAELTAFLRKA--NRALRQATLGTMNSLVVAYGD-KIGASAYEVIIVELST-LISDSDLHMTALALEL 707 (1167)
Q Consensus 633 -~~~~~~~~~~~l~~L~~~L~~~--~~~lr~~al~~L~~l~~~~~~-~~~~~~~~~~l~~l~~-~l~~~d~~~~~~al~~ 707 (1167)
...+.+|++.+++.+.....+. +..+|..|+.||+.++...+. .+.+-..+.++..+.. .++++|..+++.+..+
T Consensus 786 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a 865 (876)
T 1qgr_A 786 DVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWA 865 (876)
T ss_dssp GGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHH
Confidence 1356789888887776665555 679999999999999998875 3211111334555555 5677888899999888
Q ss_pred HHHHhhc
Q 001062 708 CCTLMAD 714 (1167)
Q Consensus 708 l~~l~~~ 714 (1167)
++.+.+-
T Consensus 866 ~~~~~~~ 872 (876)
T 1qgr_A 866 TKELRKL 872 (876)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887754
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.9e-31 Score=329.32 Aligned_cols=571 Identities=14% Similarity=0.168 Sum_probs=447.7
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh-hhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHH
Q 001062 48 SNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1167)
Q Consensus 48 ~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~-~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~ 126 (1167)
+..++..|.++++.+|..|++.++.++..+++ ..+..+++.|.... ++++++|..++.+|..++..++.. .+..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~----~~~~ 86 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP----EYVH 86 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG----GGGG
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH----HHHH
Confidence 77899999999999999999999999887764 34567888887655 666678888888887666554432 2345
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHH
Q 001062 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLL 206 (1167)
Q Consensus 127 ~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~ 206 (1167)
.++|.|...+.++ ++.+|..+.++|+.++..++.. ...+.+++.+.....++.+.+|..|+.+++.++...++...
T Consensus 87 ~ll~~L~~l~~~~--~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~ 162 (588)
T 1b3u_A 87 CLLPPLESLATVE--ETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK 162 (588)
T ss_dssp GGHHHHHHHTTSS--CHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred HHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 6777777666554 5899999999999999877653 23445667776666677789999999999999999998878
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC
Q 001062 207 AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1167)
Q Consensus 207 ~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~ 286 (1167)
+.+++.+...+++++ ..+|..++++++.+++..|.. .+.+.++|.+...+++ +++.+|..|+.++..+...++
T Consensus 163 ~~l~~~l~~l~~d~~--~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~ 235 (588)
T 1b3u_A 163 AELRQYFRNLCSDDT--PMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASD---EQDSVRLLAVEACVNIAQLLP 235 (588)
T ss_dssp HHHHHHHHHHHTCSC--HHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTC---SCHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCC
Confidence 888888888887664 589999999999999887653 3567899999988877 788999999999999998887
Q ss_pred ccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHH
Q 001062 287 RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSK 366 (1167)
Q Consensus 287 ~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~ 366 (1167)
.+ .+.+.+++.+.+++. |.+|+||++|+++++.+....+.. .
T Consensus 236 ~~--~~~~~~~~~l~~~~~----------------------------------d~~~~vR~~a~~~l~~l~~~~~~~--~ 277 (588)
T 1b3u_A 236 QE--DLEALVMPTLRQAAE----------------------------------DKSWRVRYMVADKFTELQKAVGPE--I 277 (588)
T ss_dssp HH--HHHHHTHHHHHHHHT----------------------------------CSSHHHHHHHHHTHHHHHHHHCHH--H
T ss_pred HH--HHHHHHHHHHHHHcc----------------------------------CCCHHHHHHHHHHHHHHHHHhCcc--c
Confidence 53 234455565555442 236999999999999998865431 2
Q ss_pred HHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHH
Q 001062 367 LYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGA 446 (1167)
Q Consensus 367 ~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~ 446 (1167)
+...++|.+++.++|.++.||..+..+++.+....+.. .....+++.+++.+.+.++++++.+|..+
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-------------~~~~~~~~~l~p~l~~~l~d~~~~vR~~a 344 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD-------------CRENVIMSQILPCIKELVSDANQHVKSAL 344 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT-------------THHHHHHHTHHHHHHHHHTCSCHHHHHHH
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh-------------hhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 44667888888889999999999999999998865421 11124667888888889999999999999
Q ss_pred HHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchH
Q 001062 447 FSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYK 526 (1167)
Q Consensus 447 ~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~ 526 (1167)
+.+++.++..++... ..+.++|.+...++|. +..+|..++..++.+.+..+. ..+.+.++|.+...++|++++
T Consensus 345 ~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~~~ 417 (588)
T 1b3u_A 345 ASVIMGLSPILGKDN--TIEHLLPLFLAQLKDE--CPEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAKWR 417 (588)
T ss_dssp HTTGGGGHHHHCHHH--HHHHTHHHHHHHHTCS--CHHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHhhHhH--HHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCCch
Confidence 999999988776543 3577889999999876 468999999999988876542 235578899999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHH
Q 001062 527 VTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPV 606 (1167)
Q Consensus 527 v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~ 606 (1167)
++..++.+++.+...+++. .+.+.++|.++..+. |.+.+||+.|+.+++.++..+|..+ +.+.++|.
T Consensus 418 vr~~~~~~l~~l~~~~~~~---------~~~~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~ 484 (588)
T 1b3u_A 418 VRLAIIEYMPLLAGQLGVE---------FFDEKLNSLCMAWLV--DHVYAIREAATSNLKKLVEKFGKEW--AHATIIPK 484 (588)
T ss_dssp HHHHHHHHHHHHHHHHCGG---------GCCHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHH
T ss_pred HHHHHHHHHHHHHHHcCHH---------HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHH
Confidence 9999999999999887652 134578888888875 5678999999999999998887642 46788888
Q ss_pred HHHhhcC--chhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhH-H
Q 001062 607 LVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAY-E 683 (1167)
Q Consensus 607 L~~~L~~--e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~-~ 683 (1167)
+...+++ ..+|..++.+++.++... ....+.+.+++.|...+.++++.+|..++.+++.++...+. +.+ +
T Consensus 485 l~~~~~~~~~~~R~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----~~~~~ 557 (588)
T 1b3u_A 485 VLAMSGDPNYLHRMTTLFCINVLSEVC---GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN----STLQS 557 (588)
T ss_dssp HHHTTTCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH----HHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch----hhhHH
Confidence 8876644 347899999999987432 11457788999999988888899999999999999877653 222 3
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHh
Q 001062 684 VIIVELSTLISDSDLHMTALALELCCTLM 712 (1167)
Q Consensus 684 ~~l~~l~~~l~~~d~~~~~~al~~l~~l~ 712 (1167)
.+++.+..++.++|..++..+..+++.+.
T Consensus 558 ~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 558 EVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 45666666778899999999998887653
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=5.3e-31 Score=325.38 Aligned_cols=569 Identities=12% Similarity=0.128 Sum_probs=449.4
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCC-hHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh-hh
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKAD-ADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-PR 81 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~-~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~-~~ 81 (1167)
+.|..+++.+.++|+++|.+|...|.+.... ++ +...+.+++.+...+ |++.+||..+.++++.+...++. ..
T Consensus 10 ~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~----~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~ 84 (588)
T 1b3u_A 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALA----LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEY 84 (588)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHTHHHHHHH----SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGG
T ss_pred CcHHHHHHHhhcccHHHHHHHHHhHHHHHHH----hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHH
Confidence 6789999999999999999999999776532 22 245567888887776 88999999999999999887654 34
Q ss_pred HHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc
Q 001062 82 VVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 82 ~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
+..+++.|...+.+++..+|..+..+|..++..++.+ .+.+.++|.+.....++ ++.+|..++.+++.+...++
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~----~~~~~l~~~l~~l~~~~--~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS----DLEAHFVPLVKRLAGGD--WFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH----HHHHTHHHHHHHHHTCS--SHHHHHHHGGGHHHHTTTSC
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhcC
Confidence 5677777777767777889999999999999988763 23345666665544433 68899999999999887776
Q ss_pred cchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 162 NLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD-LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
. ...+.+++.+...++++++.||+.|+.+++.++...+++ ....+++.+...+.+++ ...|..++.+++.++..
T Consensus 159 ~---~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 159 S---AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ--DSVRLLAVEACVNIAQL 233 (588)
T ss_dssp H---HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSC--HHHHTTHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHh
Confidence 4 356788888888889999999999999999999999876 45778888888887764 47999999999999988
Q ss_pred hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcc
Q 001062 241 VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDD 320 (1167)
Q Consensus 241 ~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~ 320 (1167)
.+.. .+.+.++|.+...+++ ++..+|..+..+++.+...++.+ .+.+.+++.+.+.++
T Consensus 234 ~~~~--~~~~~~~~~l~~~~~d---~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~--------------- 291 (588)
T 1b3u_A 234 LPQE--DLEALVMPTLRQAAED---KSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMK--------------- 291 (588)
T ss_dssp SCHH--HHHHHTHHHHHHHHTC---SSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHT---------------
T ss_pred CCHH--HHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhC---------------
Confidence 6643 2456788888888876 78899999999999999876543 245667777777664
Q ss_pred cccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhH--HHHHHHhhHHHhhhccCChhHHHHHHHHHHHHH
Q 001062 321 EAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLS--KLYEEACPKLIDRFKEREENVKMDVFNTFIELV 398 (1167)
Q Consensus 321 ~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~--~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~ 398 (1167)
|..|.||++|+.+++.+....+.... .++..++|.+...++|.++.||..+..+++.+.
T Consensus 292 -------------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 292 -------------------DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp -------------------CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred -------------------CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 12479999999999999987764322 467888899888889999999999999988887
Q ss_pred HhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhccc
Q 001062 399 RQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLND 478 (1167)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d 478 (1167)
...+. ....+.+++.+...++++++.+|..++..++.+....+.. .+.+.++|.+.+.+.|
T Consensus 353 ~~~~~-----------------~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d 413 (588)
T 1b3u_A 353 PILGK-----------------DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAED 413 (588)
T ss_dssp HHHCH-----------------HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTC
T ss_pred HHhhH-----------------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcC
Confidence 76541 1234677788888889988999999999999998876542 3467788888888887
Q ss_pred CCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchH
Q 001062 479 KSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ 558 (1167)
Q Consensus 479 ~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~ 558 (1167)
+ ++.+|..++.+++.+....+++. +.+.++|.+...++|+.+.|+..|+.+++.++..+++. .+.+
T Consensus 414 ~--~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---------~~~~ 479 (588)
T 1b3u_A 414 A--KWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---------WAHA 479 (588)
T ss_dssp S--SHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---------HHHH
T ss_pred C--CchHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---------hHHH
Confidence 6 57899999999999887655432 33578899999999999999999999999999887651 2467
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCc--hhhHHHHHHHHHHhcCCCCCch
Q 001062 559 PIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDL 636 (1167)
Q Consensus 559 ~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~~~~~~~~ 636 (1167)
.++|.+..... +.+..+|..++.++|.+...+|.. .+.+.++|.+...++++ .+|..++++++.++... +.
T Consensus 480 ~llp~l~~~~~--~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~-~~-- 552 (588)
T 1b3u_A 480 TIIPKVLAMSG--DPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL-DN-- 552 (588)
T ss_dssp HTHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGS-CH--
T ss_pred HHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHh-ch--
Confidence 78887776553 667899999999999999877653 36788999999988654 57999999999998543 21
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001062 637 TCVLEHVIAELTAFLRKANRALRQATLGTMNSL 669 (1167)
Q Consensus 637 ~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l 669 (1167)
..+.+.+++.|..++...|..+|..+..++..+
T Consensus 553 ~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 553 STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 112256777777766778999999999998865
No 11
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.94 E-value=5e-23 Score=268.46 Aligned_cols=670 Identities=10% Similarity=0.043 Sum_probs=441.2
Q ss_pred CCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHH
Q 001062 15 GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD---VAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCI 91 (1167)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d---~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~ 91 (1167)
+.|+.+|+.|+.-|++.+++.|.+++++....+.+.+++.+.. ..+.||+....|++.++.+..+ .|+.+++.|++
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~ 129 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVIN 129 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHH
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHH
Confidence 5788999999999999999988888877777777777766643 2489999999999999987666 89999999999
Q ss_pred HhcCC------CcchhcHHHHHHHHHHhhcC---Cc-------hhHHHHHHHHHHHHHHhhhccCCC------hhHHHHH
Q 001062 92 KLLNG------KDQHRDIASIALKTIIAEVT---TS-------SLAQSIHTSLTPQLTKGITLKDMN------TEIRCEC 149 (1167)
Q Consensus 92 ~~~~~------~~~~r~~a~~aL~~~~~~~~---~~-------~~~~~~~~~i~p~Ll~~l~~~~~~------~~v~~~~ 149 (1167)
.+.++ +...+..+...|+.+++++. .. ......+..+++.+.+.+++.... +.++..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~a 209 (971)
T 2x1g_F 130 TFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRA 209 (971)
T ss_dssp HHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHH
Confidence 87654 34467788888888886531 10 111222345555555555443211 2688889
Q ss_pred HHHHHHHHHH--hccchhHHHHHHHHHHhhhhc----------------CChHHHHHHHHHHHHHHHhhcC----HHHHH
Q 001062 150 LDILCDVLHK--FGNLMSNDHERLLSALLPQLS----------------ANQASVRKKSVSCIASLASSLS----DDLLA 207 (1167)
Q Consensus 150 ~~~L~~l~~~--~g~~l~~~~~~l~~~ll~~l~----------------~~~~~vrk~a~~~l~~l~~~~~----~~~~~ 207 (1167)
+.++...+.. .+.. ....+++.++. +. ++.+.+|..|+.|+..+..... .+.+.
T Consensus 210 l~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~ 285 (971)
T 2x1g_F 210 VKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAF 285 (971)
T ss_dssp HHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHH
T ss_pred HHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHH
Confidence 9999888774 2222 44667777766 41 1456899999999999987432 23455
Q ss_pred HHHHHHHHHhh----c-CCCC---hHHHHHHHHHHHHHHHHhhhhhh-----------cchhhhHHHHHHHhhhcC--CC
Q 001062 208 KATIEVVRNLR----S-KGAK---PEMIRTNIQMVGALSRAVGYRFG-----------PHLGDTVPVLIDYCTSAS--EN 266 (1167)
Q Consensus 208 ~l~~~l~~~l~----~-~~~~---~~~r~~~~~~l~~l~~~~~~~~~-----------p~l~~lvp~l~~~l~~~~--e~ 266 (1167)
.+++.++.... . .+.+ .+.....+..+..++...+..|. +++..+++.++.+....+ .+
T Consensus 286 ~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~ 365 (971)
T 2x1g_F 286 VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPV 365 (971)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTT
T ss_pred HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCc
Confidence 66665554221 0 1112 15666777788777765444433 578888898888764311 14
Q ss_pred ChhHHHHHHHHHHHHHHhC---------C---ccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccch-----
Q 001062 267 DEELREYSLQALESFLLRC---------P---RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEED----- 329 (1167)
Q Consensus 267 ~~e~re~al~~l~~l~~~~---------~---~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~----- 329 (1167)
+++++..+++++..+++.. + ..++|+++++++.++..+.|+++.. .+++ +.+|.+++.+.
T Consensus 366 ~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~-~~~~--d~~e~~~f~~~R~~~~ 442 (971)
T 2x1g_F 366 EESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKS-LAKW--SSDDLECFRCYRQDIS 442 (971)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTT-TSCS--CHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccc-cccc--CHhHHHHHHHHHHHHH
Confidence 6789999999988887622 1 2356899999999888887643211 0010 10000000000
Q ss_pred h-------hcC----------------CCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhc--cCCh
Q 001062 330 E-------SAN----------------EYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFK--EREE 384 (1167)
Q Consensus 330 ~-------~~~----------------~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~--d~~~ 384 (1167)
+ ... .|. .+...|+.|++|..+++++.+..++...+.+..+++ ++..+. |.++
T Consensus 443 ~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~ 520 (971)
T 2x1g_F 443 DTFMYCYDVLNDYILEILAAMLDEAIADLQ-RHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNV 520 (971)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHHHHHHH-HCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCH
Confidence 0 000 000 112579999999999999988765433345555665 333444 4588
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhh
Q 001062 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADH 464 (1167)
Q Consensus 385 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~ 464 (1167)
.||..++.+++.+.+.... . .++++.+++.+...+ + ++++..+..++..+++.++..+.+|
T Consensus 521 ~vr~~a~~~l~~~~~~l~~---------------~-~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~ 581 (971)
T 2x1g_F 521 KLLGTALETMGSYCNWLME---------------N-PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPY 581 (971)
T ss_dssp HHHHHHHHHHHHTHHHHC--------------------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc---------------C-HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999988766541 1 256778888888777 3 6789999999999999988889999
Q ss_pred hhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhc----CC--ch---HHHHHHHHHH
Q 001062 465 IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG----ER--YY---KVTAEALRVC 535 (1167)
Q Consensus 465 l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~----d~--~~---~v~~~al~~l 535 (1167)
++.++..+.+.+.........+...+.+++.++...+++...+|+..+++.+...++ .. .. .-...++..+
T Consensus 582 ~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L 661 (971)
T 2x1g_F 582 ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMI 661 (971)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 999999999999864334577888889999998866567778888888888777654 21 11 3344566666
Q ss_pred HHHHHhccCCccc-c-----CCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHH
Q 001062 536 GELVRVLRPSVEG-L-----GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVD 609 (1167)
Q Consensus 536 ~~l~~~~~~~~~~-~-----~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~ 609 (1167)
+.++..+++.... . ...+.++.+.+++.+...+.....+.++.+.++.++|.++..+|+.+.|+++.+++.+..
T Consensus 662 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~ 741 (971)
T 2x1g_F 662 STLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVA 741 (971)
T ss_dssp HHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHH
T ss_pred HHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHH
Confidence 6666665532100 0 124678899999988888765444679999999999999999999999999999999998
Q ss_pred hhcCchhhHHHHHHHHHHhcCCCCC-c----hhhHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHhCCC-
Q 001062 610 RMGNEITRLTAVKAFAVIAASPLHI-D----LTCVLEHVIAELTAFLR-------KANRALRQATLGTMNSLVVAYGDK- 676 (1167)
Q Consensus 610 ~L~~e~~r~~a~~al~~i~~~~~~~-~----~~~~~~~~l~~L~~~L~-------~~~~~lr~~al~~L~~l~~~~~~~- 676 (1167)
.+++... ..++..++.++..-... . +.+.+..++..+...+. .+++.++...+..+..++.+++..
T Consensus 742 ~~~~~~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~ 820 (971)
T 2x1g_F 742 SFQTRCC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVL 820 (971)
T ss_dssp HCC--CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHhcCCc-hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHH
Confidence 8866433 45778888877543221 1 33344444444333332 246789999999999999887765
Q ss_pred CChhh-HHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhc
Q 001062 677 IGASA-YEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1167)
Q Consensus 677 ~~~~~-~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1167)
+..+. +..++......+...++.....++.+|..++..
T Consensus 821 ~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 821 EDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp GCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 33345 778888777777667777778888899887765
No 12
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.94 E-value=1.1e-22 Score=265.41 Aligned_cols=669 Identities=12% Similarity=0.057 Sum_probs=456.5
Q ss_pred CCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHH
Q 001062 15 GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD---VAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCI 91 (1167)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d---~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~ 91 (1167)
+.|+.+|+.|+.-|++.+++.|..++++....+.+.+++.+.. .++.||+....|++.++.+.-++.|+.+++.|++
T Consensus 69 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~ 148 (963)
T 2x19_B 69 DKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVR 148 (963)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHH
Confidence 6788999999999999999988888877777777777776643 3588999999999999987666679999999999
Q ss_pred HhcC-----CCcchhcHHHHHHHHHHhhcCCc-----------hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHH
Q 001062 92 KLLN-----GKDQHRDIASIALKTIIAEVTTS-----------SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCD 155 (1167)
Q Consensus 92 ~~~~-----~~~~~r~~a~~aL~~~~~~~~~~-----------~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~ 155 (1167)
.+.+ ++...+..+...|..+.+++... ......+..+++.+.+.+.+......++..++.++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~ 228 (963)
T 2x19_B 149 LFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSS 228 (963)
T ss_dssp HHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHH
T ss_pred HHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 8765 23345778888888888654210 0112335566666666665543222477778887766
Q ss_pred HHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC----HHHHHHHHHHHHHH-------hhcCCCCh
Q 001062 156 VLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS----DDLLAKATIEVVRN-------LRSKGAKP 224 (1167)
Q Consensus 156 l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~----~~~~~~l~~~l~~~-------l~~~~~~~ 224 (1167)
.+. .+..+. ....+++.++..+. .+.+|..|+.|+..+..... ...+..+++.++.. +.. .+.
T Consensus 229 wi~-~~~~~~-~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~d~ 302 (963)
T 2x19_B 229 WVQ-LEVPLQ-DCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQN--GDM 302 (963)
T ss_dssp HHT-SSCCGG-GTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHT--TCH
T ss_pred HHc-CCCCcc-cchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHC--CCH
Confidence 554 444332 33667777777774 45789999999999987432 23455555544432 222 123
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh------cchhhhHHHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhC-----------
Q 001062 225 EMIRTNIQMVGALSRAVGYRFG------PHLGDTVPVLIDYCTSAS--ENDEELREYSLQALESFLLRC----------- 285 (1167)
Q Consensus 225 ~~r~~~~~~l~~l~~~~~~~~~------p~l~~lvp~l~~~l~~~~--e~~~e~re~al~~l~~l~~~~----------- 285 (1167)
+..+..+.++..++...+..+. +++..+++.++.+....+ +.+++++..|+..+..+++..
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~ 382 (963)
T 2x19_B 303 ETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVY 382 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHH
Confidence 5556677788887776555553 577788888888765411 135667888888888887732
Q ss_pred CccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccc------------------h----------hhcCCCCC
Q 001062 286 PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEE------------------D----------ESANEYTD 337 (1167)
Q Consensus 286 ~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d------------------~----------~~~~~~~d 337 (1167)
...+.|++.++++.++..+.|+++.. .+++|+|+ .+++.+ + ..-..|
T Consensus 383 ~~~~~~~l~~l~~~ll~~~~~p~~~~-~~~~~~de--~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~-- 457 (963)
T 2x19_B 383 QQVYRPVYFQLVDVLLHKAQFPSDEE-YGFWSSDE--KEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSS-- 457 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHH-HHTSCHHH--HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccc-ccCCChhH--HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc--
Confidence 12356899999999988887532100 00000000 000000 0 000111
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchH
Q 001062 338 DEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1167)
Q Consensus 338 ddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~ 417 (1167)
.++..|+.|++|+.+++++.....+...+++..+++.+. .+.+.++.||..++.+++.+.+....
T Consensus 458 ~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~-------------- 522 (963)
T 2x19_B 458 EEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLAD-------------- 522 (963)
T ss_dssp CCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHH--------------
T ss_pred CCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHh--------------
Confidence 134689999999999999988765433345556666443 45556788999999988887654321
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHh
Q 001062 418 WLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 497 (1167)
Q Consensus 418 ~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~ 497 (1167)
-.++++.+++.+...+.+ ++++..|+.+|..+++.++..+.+|++.+++.+...+.........+...+.+++.++
T Consensus 523 --~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 523 --HPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp --CHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 025678888888888865 7899999999999999888889999999999999988753334567888888899998
Q ss_pred ccCCCCchhhhhHhhHHHHHHHhc----C-Cch---HHHHHHHHHHHHHHHhccCCccc---------------cCCCCc
Q 001062 498 SSHSPPVFHPYIKALSSPVLAAVG----E-RYY---KVTAEALRVCGELVRVLRPSVEG---------------LGFDFK 554 (1167)
Q Consensus 498 ~~~~~~~~~~~l~~ll~~l~~~l~----d-~~~---~v~~~al~~l~~l~~~~~~~~~~---------------~~~~~~ 554 (1167)
...+++.+.+|+..+++.+...++ . .+. ..+...+.+++.+++.++..... ....+.
T Consensus 599 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (963)
T 2x19_B 599 SALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVV 678 (963)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchH
Confidence 765446788899999988887764 1 122 33446778888888877642110 001245
Q ss_pred cchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhc--CCC
Q 001062 555 PYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAA--SPL 632 (1167)
Q Consensus 555 ~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~--~~~ 632 (1167)
++.+.+++.+...+..-..+.++++.+..+++.++..+|+.+.++++.+++.++....+.. -...+..++.++. +..
T Consensus 679 ~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~l~l~~~li~~f~~~ 757 (963)
T 2x19_B 679 VVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP-QASALDLTRQLVHIFAHE 757 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHHhCCC
Confidence 5788888888777765444678999999999999999999998999998888877654321 1235566666654 221
Q ss_pred C---CchhhHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhCCC-CChhh-HHHHHHHHhhhcCCCchhhHHHH
Q 001062 633 H---IDLTCVLEHVIAELTAFLRK---ANRALRQATLGTMNSLVVAYGDK-IGASA-YEVIIVELSTLISDSDLHMTALA 704 (1167)
Q Consensus 633 ~---~~~~~~~~~~l~~L~~~L~~---~~~~lr~~al~~L~~l~~~~~~~-~~~~~-~~~~l~~l~~~l~~~d~~~~~~a 704 (1167)
. ..+.+++..++..+...+.+ +++.++...+..+..++.+++.. ++++. +..+++.+...++..+..+...+
T Consensus 758 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 837 (963)
T 2x19_B 758 PAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKAS 837 (963)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHH
Confidence 1 11233344444444555553 35889999999999999988765 33444 88899888888888899999999
Q ss_pred HHHHHHHhhc
Q 001062 705 LELCCTLMAD 714 (1167)
Q Consensus 705 l~~l~~l~~~ 714 (1167)
+.++..++..
T Consensus 838 l~~l~~l~~~ 847 (963)
T 2x19_B 838 CGFFTELLPR 847 (963)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.93 E-value=3.8e-23 Score=246.70 Aligned_cols=411 Identities=12% Similarity=0.110 Sum_probs=317.9
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHhhh-------
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV--AGDVSGLAVKCLAPLVK------- 75 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~--~~~Vr~~A~~~l~~l~~------- 75 (1167)
.|..+++++.++|++.|.+|...|.+.-+ ...+.+...++..+.++ +..||..|...|..++.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~--------~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAV--------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHh--------hChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 47789999999999999999999986332 12455667777777654 68999999999998863
Q ss_pred --------hcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHH
Q 001062 76 --------KVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRC 147 (1167)
Q Consensus 76 --------~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~ 147 (1167)
.++++....+-..|+..+.+++..+ ..++.++..+.....+.. ....++|.|++.++++..++.+|.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHH
Confidence 3455555667778888888877777 888888888776532210 124678888888876411478999
Q ss_pred HHHHHHHHHHHHh-ccchhHHHHHHHHHHhhhhcCC--hHHHHHHHHHHHHHHHhhcCHHH----H-HHHHHHHHHHhhc
Q 001062 148 ECLDILCDVLHKF-GNLMSNDHERLLSALLPQLSAN--QASVRKKSVSCIASLASSLSDDL----L-AKATIEVVRNLRS 219 (1167)
Q Consensus 148 ~~~~~L~~l~~~~-g~~l~~~~~~l~~~ll~~l~~~--~~~vrk~a~~~l~~l~~~~~~~~----~-~~l~~~l~~~l~~ 219 (1167)
.++.+|+.+++.+ +..+.++.+.+++.++..++++ ++.||+.|+.|++.+..+..+.. + +.+++.+...+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999999987 6667788899999999999988 67999999999999876654331 2 2245555555544
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhhhhhcchh-hhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC-------------
Q 001062 220 KGAKPEMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEELREYSLQALESFLLRC------------- 285 (1167)
Q Consensus 220 ~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~-~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~------------- 285 (1167)
+ +.+.|..++.+++.++...+..|.||++ .+++.++..+.+ .++++|..+++++..++...
T Consensus 229 ~--~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 303 (462)
T 1ibr_B 229 P--DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS---DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (462)
T ss_dssp S--SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC---SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3 3588999999999999999999999999 999999988877 78999999999998887652
Q ss_pred --------CccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHH
Q 001062 286 --------PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALI 357 (1167)
Q Consensus 286 --------~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li 357 (1167)
...+.+|++.+++.+++.+... + +|++|.+|.+|++|+.+++.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~------d---------------------~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQ------D---------------------ENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCC------C---------------------SSCCTTCCSHHHHHHHHHHHHH
T ss_pred CCCccchhHHHHHHHhhhccHHHHHHHHhc------c---------------------cccccccchHHHHHHHHHHHHH
Confidence 1124467788898888777410 0 0012346999999999999999
Q ss_pred hcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhcc
Q 001062 358 VSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE 437 (1167)
Q Consensus 358 ~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~ 437 (1167)
...++ .++..++|.+.+.++++++.+|.+++.+++.+.....+ ..+..+++.+++.+.+.+++
T Consensus 357 ~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--------------~~~~~~l~~~~~~l~~~l~d 419 (462)
T 1ibr_B 357 TCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP--------------SQLKPLVIQAMPTLIELMKD 419 (462)
T ss_dssp HHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT--------------TTTCTTTTTHHHHHHHGGGC
T ss_pred HhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH--------------HHHHHHHHHHHHHHHHHhcC
Confidence 98874 45677888888888999999999999999988753210 12345668899999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCchh--HhhhhhhHHHHHHhcc
Q 001062 438 KSIKTKVGAFSVLRELVVVLPDCL--ADHIGSLIPGIEKSLN 477 (1167)
Q Consensus 438 ~~~~~r~~~~~~l~~l~~~~~~~l--~~~l~~l~~~l~~~l~ 477 (1167)
+++.+|..++.+++.++..+++.+ .+|++++++.+.++|+
T Consensus 420 ~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 999999999999999999887765 4789999999887764
No 14
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.91 E-value=6.1e-21 Score=247.43 Aligned_cols=646 Identities=12% Similarity=0.065 Sum_probs=408.1
Q ss_pred CCChhHHhHhHHHHHHHhccccc------CCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHH
Q 001062 15 GKDKDFRYMATSDLLNELNKESF------KADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDK 88 (1167)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~------~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~ 88 (1167)
+.+..+|++|.--|++.+.+.|. .++++....|...++..+.++++.||+++..+++.+++.-.+..|+.+++.
T Consensus 48 ~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~ 127 (960)
T 1wa5_C 48 NLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSD 127 (960)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHH
Confidence 35778999999999999988664 677788888889999998877799999999999999987555789999999
Q ss_pred HHHHhcCCCcchhcHHHHHHHHHHhhcCCc----hhH---HHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc
Q 001062 89 LCIKLLNGKDQHRDIASIALKTIIAEVTTS----SLA---QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~----~~~---~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
|++.+.+++...+.++..+|..+++..... ... ..++....|.+++.
T Consensus 128 L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~-------------------------- 181 (960)
T 1wa5_C 128 LASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNL-------------------------- 181 (960)
T ss_dssp HHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHH--------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 999988777677888888899888865431 010 11122222222211
Q ss_pred cchhHHHHHHHHHHhhhhcCChH---------HHHHHHHHHHHHHHhh-cCHH---HHHHHHHHHHHHhhcCC-------
Q 001062 162 NLMSNDHERLLSALLPQLSANQA---------SVRKKSVSCIASLASS-LSDD---LLAKATIEVVRNLRSKG------- 221 (1167)
Q Consensus 162 ~~l~~~~~~l~~~ll~~l~~~~~---------~vrk~a~~~l~~l~~~-~~~~---~~~~l~~~l~~~l~~~~------- 221 (1167)
...+.+.++++.. .+++.++.++..+... .++. .+...++.+.+.+....
T Consensus 182 ----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~ 251 (960)
T 1wa5_C 182 ----------LKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPD 251 (960)
T ss_dssp ----------HHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC---
T ss_pred ----------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCc
Confidence 1111111221110 1222233344333211 1221 23444555555443210
Q ss_pred -CC-----hHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcC--CCChhHHHHHHHHHHHHHHhC--Ccccc-
Q 001062 222 -AK-----PEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSAS--ENDEELREYSLQALESFLLRC--PRDIS- 290 (1167)
Q Consensus 222 -~~-----~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~--e~~~e~re~al~~l~~l~~~~--~~~~~- 290 (1167)
.. ...|+.++.++..++...++.|.||++.+++.+++.+...+ ..++.++..+++.+..+++.- ...++
T Consensus 252 d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~ 331 (960)
T 1wa5_C 252 ETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNN 331 (960)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCS
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcC
Confidence 00 23567888999999999999999999999999999886421 246678888888888776532 23455
Q ss_pred -ccHHHHH-HHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHH
Q 001062 291 -SYCDEIL-HLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY 368 (1167)
Q Consensus 291 -~~l~~ii-~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~ 368 (1167)
+|+++++ .++++++.|.+. |+ +..++ |.+++ -.++ .|++..|.+|++|..++..+...+++. +.
T Consensus 332 ~~~l~~li~~~i~~~m~~~~~----d~---e~w~~-dp~e~-i~~d--~e~~d~~s~R~aa~~~L~~l~~~~~~~---v~ 397 (960)
T 1wa5_C 332 ESAMNNITEQIILPNVTLREE----DV---ELFED-DPIEY-IRRD--LEGSDTDTRRRACTDFLKELKEKNEVL---VT 397 (960)
T ss_dssp HHHHHHHHHHTHHHHHSCCGG----GT---TTTTT-CHHHH-HHHH--HHC----CHHHHHHHHHHHHHHHCHHH---HH
T ss_pred chHHHHHHHHHhHHhcCCCHH----HH---HHHhc-CHHHH-HHhc--cCcccccCcHHHHHHHHHHHHHHcchh---HH
Confidence 8999999 789999976532 00 00000 00000 0000 012334789999999999999988743 34
Q ss_pred HHHhhHHHhhhc------cCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccC---C
Q 001062 369 EEACPKLIDRFK------EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREK---S 439 (1167)
Q Consensus 369 ~~i~p~L~~~l~------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~---~ 439 (1167)
..+++.+.+.+. ..+|..|.+++.+++.+........+. .....+ ..+..+-+.+.+...++++ +
T Consensus 398 ~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~---~~~~~~---~~~l~~~l~~~v~p~l~~~~~~~ 471 (960)
T 1wa5_C 398 NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG---VSSTNN---LLNVVDFFTKEIAPDLTSNNIPH 471 (960)
T ss_dssp HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB---CCCBCT---TCCHHHHHHHHTHHHHHCSSCSC
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC---cccccc---cccHHHHHHHHhHHHhcCCCCCC
Confidence 444444433343 456888999999999986432111000 000000 0012222334445555666 7
Q ss_pred hhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccC----------CCCchhhhh
Q 001062 440 IKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH----------SPPVFHPYI 509 (1167)
Q Consensus 440 ~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~----------~~~~~~~~l 509 (1167)
+.+|..++.+++.+.+.+++ .++..+++.+.+.|.|. +..++..|+.++..+++.. ..+.+.||+
T Consensus 472 p~vr~~a~~~lg~~~~~~~~---~~l~~~l~~l~~~L~d~--~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (960)
T 1wa5_C 472 IILRVDAIKYIYTFRNQLTK---AQLIELMPILATFLQTD--EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (960)
T ss_dssp HHHHHHHHHHHHHTGGGSCH---HHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred ceehHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence 88999999999999887643 47999999999999875 4678999999999998742 234578999
Q ss_pred HhhHHHHHHHhcCCc---hH--HHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhc---CCCCHHHHHHH
Q 001062 510 KALSSPVLAAVGERY---YK--VTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN---QDQDQEVKECA 581 (1167)
Q Consensus 510 ~~ll~~l~~~l~d~~---~~--v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~---~d~~~~vr~~A 581 (1167)
+.+++.+...++... .+ ....++.+++.++..++. .+.||+..+++.+...+.. +..+...+..+
T Consensus 547 ~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~-------~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~ 619 (960)
T 1wa5_C 547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED-------SIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYT 619 (960)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT-------TTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 999999999887531 11 234667788888777654 5789999999988887764 23466788889
Q ss_pred HHHHHHHHHhcC-cccccchhhhHHHHHHhhcCc--hhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH--HHHHHhhH
Q 001062 582 ISCMGLVISTFG-DNLGAELPACLPVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELT--AFLRKANR 656 (1167)
Q Consensus 582 i~alg~l~~~~g-~~l~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~--~~L~~~~~ 656 (1167)
+.++|.++...+ +.+.++.+.++|.+...+.+. .....+...++.+.... ..+.+++..+++.+. ..+...
T Consensus 620 ~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~l~~~~~~~~~-- 695 (960)
T 1wa5_C 620 FESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS--ATIPESIKPLAQPLLAPNVWELK-- 695 (960)
T ss_dssp HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC--SSCCTTTGGGHHHHTSGGGGCCT--
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHcCHHHhcCC--
Confidence 999999988744 345567788999888877554 34556777777766332 234555555655554 333221
Q ss_pred HHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCch-hhhhhhchHHHHHH
Q 001062 657 ALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNV-GLAVRNKVLPQALA 735 (1167)
Q Consensus 657 ~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~-~~~~~~~~l~~l~~ 735 (1167)
..-.....+|...+...+..+.. ++.+++.+...+.+.. ....++.+++.++.. .|.. ..+|.+.+++.++.
T Consensus 696 ~~~~~~~~~L~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~---~~~~~~~~yl~~i~~~l~~ 768 (960)
T 1wa5_C 696 GNIPAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASKA--YEVHGFDLLEHIMLL---IDMNRLRPYIKQIAVLLLQ 768 (960)
T ss_dssp TTHHHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTT--THHHHHHHHHHHHHH---SCHHHHGGGHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHhChHHHHH--HHHHHHHHHHHhCCCc--ccchHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHH
Confidence 12234555666665544433221 2445555555443332 236788999998887 6654 55666666666665
Q ss_pred Hhhh
Q 001062 736 LIKS 739 (1167)
Q Consensus 736 ll~~ 739 (1167)
.++.
T Consensus 769 ~l~~ 772 (960)
T 1wa5_C 769 RLQN 772 (960)
T ss_dssp GGGS
T ss_pred HHhh
Confidence 5543
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.88 E-value=1.3e-20 Score=224.54 Aligned_cols=436 Identities=13% Similarity=0.145 Sum_probs=316.5
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCC--CcchhcHHHHHHHHHHhhcCCchhHHHHHH
Q 001062 49 NIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNG--KDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1167)
Q Consensus 49 ~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~--~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~ 126 (1167)
..++..+.+|++++|+.|.+.|..+... ..+.+...|+..+.+. +..+|..|+..|++++......
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~----~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~-------- 71 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVE----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD-------- 71 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH--------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh----ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchH--------
Confidence 4566777799999999999999886532 1344555666655553 4568999999999877543210
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH-HH
Q 001062 127 SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD-DL 205 (1167)
Q Consensus 127 ~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~-~~ 205 (1167)
+.+ .+...+...-.+....+.+.+++.+.++.+.+ +.+..+++.++....+ ..
T Consensus 72 -------------------~~~------~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~ 125 (462)
T 1ibr_B 72 -------------------IKA------QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ 125 (462)
T ss_dssp -------------------HHH------HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC
T ss_pred -------------------HHH------HHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccc
Confidence 000 00001111111345566677777787777778 8999999999987543 35
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh-hhhhhcchhhhHHHHHHHhhhcCCC--ChhHHHHHHHHHHHHH
Q 001062 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASEN--DEELREYSLQALESFL 282 (1167)
Q Consensus 206 ~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~-~~~~~p~l~~lvp~l~~~l~~~~e~--~~e~re~al~~l~~l~ 282 (1167)
+..+++.+++.+.++..+...|..++.+++.+++.. +..+.+|++.+++.+.+.+++ + +.++|..+++++..++
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~---~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK---EEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHHH
Confidence 788999999998875212478999999999999976 777899999999999999987 4 6899999999999887
Q ss_pred HhCCcccccc--HHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcC
Q 001062 283 LRCPRDISSY--CDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR 360 (1167)
Q Consensus 283 ~~~~~~~~~~--l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~ 360 (1167)
..+...+... .+.+++.+.+.+. +..+++|+++++++..++..+
T Consensus 203 ~~~~~~~~~~~~~~~l~~~l~~~~~----------------------------------~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 203 EFTKANFDKESERHFIMQVVCEATQ----------------------------------CPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp TTTHHHHTSHHHHHHHHHHHHHHTT----------------------------------CSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcC----------------------------------CCCHHHHHHHHHHHHHHHHHH
Confidence 6554332211 1223333332221 112589999999999999999
Q ss_pred ChhhHHHHH-HHhhHHHhhhccCChhHHHHHHHHHHHHHHhhC------CCCCCccCCCCCchHHHHHHHHHHHHHHHHH
Q 001062 361 PEMLSKLYE-EACPKLIDRFKEREENVKMDVFNTFIELVRQTG------NVTKGQIDNNELNPRWLLKQEVSKIVKSINR 433 (1167)
Q Consensus 361 ~~~l~~~~~-~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~------~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~ 433 (1167)
++.+.+++. .+++.++..+++.++.||..++..+..+.+... ......+..........++.+++.+++.+.+
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~ 328 (462)
T 1ibr_B 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (462)
T ss_dssp GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHH
Confidence 887777777 888888888889999999999999988876530 0000000000000112345567888888888
Q ss_pred Hhcc-------CChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchh
Q 001062 434 QLRE-------KSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFH 506 (1167)
Q Consensus 434 ~L~~-------~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~ 506 (1167)
.+.+ .++.+|.++..++..++..+++. .++.++|.+...+++. ++.+|..++.+++.+.+++.++.+.
T Consensus 329 ~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~ 403 (462)
T 1ibr_B 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLK 403 (462)
T ss_dssp HTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTC
T ss_pred HHHhcccccccccchHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHH
Confidence 8753 34689999999999999988853 4788999999999876 5789999999999999877666788
Q ss_pred hhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhh
Q 001062 507 PYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLT 569 (1167)
Q Consensus 507 ~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~ 569 (1167)
++++.++|.+...++|++++||..|+.+++.++..+++.. ...+|++.+++.++..++
T Consensus 404 ~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~-----~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 404 PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC-----CSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccccc-----ccHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999876521 124799999998887663
No 16
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.88 E-value=7.8e-19 Score=229.58 Aligned_cols=665 Identities=11% Similarity=0.105 Sum_probs=415.5
Q ss_pred CCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHhhhhcChhhHHHH
Q 001062 15 GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDV---------AGDVSGLAVKCLAPLVKKVSEPRVVEM 85 (1167)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~---------~~~Vr~~A~~~l~~l~~~~~~~~~~~l 85 (1167)
+.++.+|+.|+.-|++.+++.|..++++....+...++..+.+. ++.||+....+++.++.+--+..|+.+
T Consensus 60 s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~l 139 (1049)
T 3m1i_C 60 STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEF 139 (1049)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHH
Confidence 56889999999999999999888888888888888888887642 478999999999999988656789999
Q ss_pred HHHHHHHhcCCCcchhcHHHHHHHHHHhhcCC---c-----------hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHH
Q 001062 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTT---S-----------SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLD 151 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~---~-----------~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~ 151 (1167)
++.|++.+. .++..++.+..+|+.+.+++.. + ......+..+++.+.+.+++.. +..++..++.
T Consensus 140 l~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~-~~~~~~~aL~ 217 (1049)
T 3m1i_C 140 IPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS-SSSLIVATLE 217 (1049)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 999999885 4444577888888888865431 1 1112234455555566666543 5678888998
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc-CH------HHHHHHHHHHHHHhhc-----
Q 001062 152 ILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL-SD------DLLAKATIEVVRNLRS----- 219 (1167)
Q Consensus 152 ~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~-~~------~~~~~l~~~l~~~l~~----- 219 (1167)
++...+........ ..+.+++.++..+. +++.+|..|+.|+..++..- ++ ..+..+++.++..++.
T Consensus 218 ~l~~~l~wi~~~~~-~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~ 295 (1049)
T 3m1i_C 218 SLLRYLHWIPYRYI-YETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295 (1049)
T ss_dssp HHHHHTTTSCTHHH-HSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHhhCCHHHH-hhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCC
Confidence 88877664432110 11345666653332 25689999999999998652 11 1232333333332211
Q ss_pred ----------C-CCChHHHHHHHHHHHHHHHHhh------hhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 001062 220 ----------K-GAKPEMIRTNIQMVGALSRAVG------YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1167)
Q Consensus 220 ----------~-~~~~~~r~~~~~~l~~l~~~~~------~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~ 282 (1167)
. +.+.+..+..+..+..++.... ..+.+++..++++++.+... ++++++..|+..+..++
T Consensus 296 ~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~---~d~~v~~~~lefw~~l~ 372 (1049)
T 3m1i_C 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKI---EERELFKTTLDYWHNLV 372 (1049)
T ss_dssp TSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHH
T ss_pred cccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHH
Confidence 1 1122334445555555544322 23577888899999988777 68899999999998888
Q ss_pred Hh------CCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccch-hhcCCC--------------------
Q 001062 283 LR------CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEED-ESANEY-------------------- 335 (1167)
Q Consensus 283 ~~------~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~-~~~~~~-------------------- 335 (1167)
+. ....++++++++++.+++.+.|+++. +. .+|++.+...++.+| |+...|
T Consensus 373 ~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~-~~-~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~ 450 (1049)
T 3m1i_C 373 ADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEV-LV-VENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE 450 (1049)
T ss_dssp HHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTC-CE-EECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcce-ee-eeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 72 23446789999999999999874321 00 000110000000000 000000
Q ss_pred ---------CCCCCcchHHHHHHHHHHHHHHhcCChhh-HHHHHHHhhHHHhhh-----ccCChhHHHHHHHHHHHHHHh
Q 001062 336 ---------TDDEDASWKVRRAAAKCLAALIVSRPEML-SKLYEEACPKLIDRF-----KEREENVKMDVFNTFIELVRQ 400 (1167)
Q Consensus 336 ---------~dddd~sw~vR~aA~~~l~~li~~~~~~l-~~~~~~i~p~L~~~l-----~d~~~~vr~~~~~~l~~l~~~ 400 (1167)
-.....+|+.|.+|+.+++++.....+.. ..+...+++.++... ++....|+..++.+++...+-
T Consensus 451 ~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~ 530 (1049)
T 3m1i_C 451 IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRF 530 (1049)
T ss_dssp HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Confidence 01124679999999999998877654332 234556666555421 123344554566666554332
Q ss_pred hCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhH--------hhhhhhHHHH
Q 001062 401 TGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLA--------DHIGSLIPGI 472 (1167)
Q Consensus 401 ~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~--------~~l~~l~~~l 472 (1167)
.. .-.++++++++.+...+.+++++++..|+.+|..+++.++..+. +|++.++..+
T Consensus 531 ~~----------------~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l 594 (1049)
T 3m1i_C 531 LK----------------AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDI 594 (1049)
T ss_dssp HH----------------HCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTH
T ss_pred HH----------------hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 21 01357888899899899888899999999999999998877765 8999999999
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHhccCCC-CchhhhhHhhHHHHHHHhcC-----------C-chH---HHHHHHHHHH
Q 001062 473 EKSLNDKSSTSNLKIEALTFTRLVLSSHSP-PVFHPYIKALSSPVLAAVGE-----------R-YYK---VTAEALRVCG 536 (1167)
Q Consensus 473 ~~~l~d~~~~~~~~~~al~~l~~l~~~~~~-~~~~~~l~~ll~~l~~~l~d-----------~-~~~---v~~~al~~l~ 536 (1167)
...+.+. ...-....+.+++.++...+. +...+++..+++.+...++. . ++. .....+.+++
T Consensus 595 ~~~~~~~--~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~ 672 (1049)
T 3m1i_C 595 QKTTADL--QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNV 672 (1049)
T ss_dssp HHHHTTS--CHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHH
Confidence 8888753 233345566778888876652 35677888888887655421 0 121 1234456667
Q ss_pred HHHHhccCCccccCCCCccchHHHHHHHHHHhhcC-----------C----CCH------HHHHHHHHHHHHHHHhcC--
Q 001062 537 ELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ-----------D----QDQ------EVKECAISCMGLVISTFG-- 593 (1167)
Q Consensus 537 ~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~-----------d----~~~------~vr~~Ai~alg~l~~~~g-- 593 (1167)
.++..+++ .|.|++..++..++...... . ..+ .++..-...+..+.....
T Consensus 673 ~~~~~l~~-------~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l 745 (1049)
T 3m1i_C 673 AVCTSMGA-------DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL 745 (1049)
T ss_dssp HHHHHHGG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH
T ss_pred HHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 77777765 57788877776555332210 0 000 011111122222222211
Q ss_pred -cccccchhhhHHHHHHhhcCc--hhh-HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHH----H---HhhHHHHHHH
Q 001062 594 -DNLGAELPACLPVLVDRMGNE--ITR-LTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFL----R---KANRALRQAT 662 (1167)
Q Consensus 594 -~~l~~~~~~~l~~L~~~L~~e--~~r-~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L----~---~~~~~lr~~a 662 (1167)
....++++.++..++....+. ..| ...+..++.++..- +..+.++++.+++.+.... . .+++.+|...
T Consensus 746 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~-~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~ 824 (1049)
T 3m1i_C 746 DDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKV-GHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEF 824 (1049)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHH-GGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHH
Confidence 112244555555555433211 111 23666777766432 2345778887777665543 2 2467899999
Q ss_pred HHHHHHHHHHhCCC---CChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhc
Q 001062 663 LGTMNSLVVAYGDK---IGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1167)
Q Consensus 663 l~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1167)
+..+..++.++... +++..+..+++...-.+...++.+...++.+|..++..
T Consensus 825 f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~ 879 (1049)
T 3m1i_C 825 YKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKN 879 (1049)
T ss_dssp HHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 99999999887654 24444667777777777778888889999998888765
No 17
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.86 E-value=2.5e-17 Score=213.55 Aligned_cols=538 Identities=9% Similarity=0.090 Sum_probs=340.7
Q ss_pred hhHHHHHHHHHHHHHHH-hc-----cchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 001062 143 TEIRCECLDILCDVLHK-FG-----NLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVR 215 (1167)
Q Consensus 143 ~~v~~~~~~~L~~l~~~-~g-----~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~ 215 (1167)
..+|.-|.-.|-..+.+ |. ..+. +....+...+++.+.++...+|.....+++.++.+..+..|.++++.+++
T Consensus 51 ~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~ 130 (960)
T 1wa5_C 51 LSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLAS 130 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHH
Confidence 44555554444444433 22 1233 45556667777777666689999999999999987544568889999999
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHHhhh---------hhhcchhhhHHHHHHH-------hhhcCCCChhHH------HH
Q 001062 216 NLRSKGAKPEMIRTNIQMVGALSRAVGY---------RFGPHLGDTVPVLIDY-------CTSASENDEELR------EY 273 (1167)
Q Consensus 216 ~l~~~~~~~~~r~~~~~~l~~l~~~~~~---------~~~p~l~~lvp~l~~~-------l~~~~e~~~e~r------e~ 273 (1167)
.+++++. ..+..++.++..+++.... .+...+...+|.+++. ++........+| ..
T Consensus 131 ~l~s~~~--~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (960)
T 1wa5_C 131 RLSNDDM--VTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLV 208 (960)
T ss_dssp TCCSSCT--THHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHH
T ss_pred HhCCCCH--HHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 8877543 5788899999999885421 1111233334433332 222100111233 22
Q ss_pred HHHHHHHHHH-hCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHH
Q 001062 274 SLQALESFLL-RCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKC 352 (1167)
Q Consensus 274 al~~l~~l~~-~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~ 352 (1167)
+++++..+.. ..|..+...+...++.+.+++.+++.....+. | +++....|++|+.++++
T Consensus 209 ~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~------------d-------~~~~~~~~~vk~~~~~~ 269 (960)
T 1wa5_C 209 LIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPD------------E-------TEHASVLIKVKSSIQEL 269 (960)
T ss_dssp HHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC-------------------------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCc------------c-------cccccHHHHHHHHHHHH
Confidence 4444444332 23444555667777777777765432110000 0 01112348999999999
Q ss_pred HHHHHhcCChhhHHHHHHHhhHHHhhhc-----cCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHH--HHHH
Q 001062 353 LAALIVSRPEMLSKLYEEACPKLIDRFK-----EREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLK--QEVS 425 (1167)
Q Consensus 353 l~~li~~~~~~l~~~~~~i~p~L~~~l~-----d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~--~~~~ 425 (1167)
+..+...+++.+.++...+++..++.+. ...+.++..++..+.++++.... ...++ ++++
T Consensus 270 l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~-------------~~~~~~~~~l~ 336 (960)
T 1wa5_C 270 VQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY-------------FEIFNNESAMN 336 (960)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH-------------HGGGCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhH-------------HHHHcCchHHH
Confidence 9999999988777777777776655442 45678899999999888753210 01122 4566
Q ss_pred HHH-HHHHHHhc-----------------------cCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhccc---
Q 001062 426 KIV-KSINRQLR-----------------------EKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLND--- 478 (1167)
Q Consensus 426 ~l~-~~l~~~L~-----------------------~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d--- 478 (1167)
.++ +.+...+. +..+..|.++..+|..++...++.+ ++.+++.+.+.+..
T Consensus 337 ~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~~~l~~i~~~l~~~~~ 413 (960)
T 1wa5_C 337 NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TNIFLAHMKGFVDQYMS 413 (960)
T ss_dssp HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HHHHHHHHHHHHHHhcc
Confidence 666 45555442 1123578889999999998877544 66667776666651
Q ss_pred -CCCCchHHHHHHHHHHHHhccC-CCC-chh---h--hhHh-hHHHHHHHhcCC---chHHHHHHHHHHHHHHHhccCCc
Q 001062 479 -KSSTSNLKIEALTFTRLVLSSH-SPP-VFH---P--YIKA-LSSPVLAAVGER---YYKVTAEALRVCGELVRVLRPSV 546 (1167)
Q Consensus 479 -~~~~~~~~~~al~~l~~l~~~~-~~~-~~~---~--~l~~-ll~~l~~~l~d~---~~~v~~~al~~l~~l~~~~~~~~ 546 (1167)
...++..|..++.+++.+.+.. +.. ... + .+.. +...+...++++ ++.+|..|+.++|.+...+.
T Consensus 414 ~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--- 490 (960)
T 1wa5_C 414 DPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--- 490 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---
T ss_pred CcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---
Confidence 1234678889999999997632 111 111 0 1222 223344555666 88999999999999987652
Q ss_pred cccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhc-----------CcccccchhhhHHHHHHhhcCc-
Q 001062 547 EGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTF-----------GDNLGAELPACLPVLVDRMGNE- 614 (1167)
Q Consensus 547 ~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~-----------g~~l~~~~~~~l~~L~~~L~~e- 614 (1167)
..++..+++.++..+. +.+..||..|.+|+..++... ++.+.||++.+++.|...++..
T Consensus 491 -------~~~l~~~l~~l~~~L~--d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~ 561 (960)
T 1wa5_C 491 -------KAQLIELMPILATFLQ--TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHG 561 (960)
T ss_dssp -------HHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhcc
Confidence 2478999999999886 457899999999999998753 2457789999999988877553
Q ss_pred ----h--hhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHhCCCCChhhHH
Q 001062 615 ----I--TRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKA-----NRALRQATLGTMNSLVVAYGDKIGASAYE 683 (1167)
Q Consensus 615 ----~--~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~-----~~~lr~~al~~L~~l~~~~~~~~~~~~~~ 683 (1167)
. ....++.+++.++... +.++.||+..+++.|...+... ++.++...++|++.++...+...-....+
T Consensus 562 ~~~~~~~~~e~l~~al~~vv~~~-~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~ 640 (960)
T 1wa5_C 562 SSPEKLAENEFLMRSIFRVLQTS-EDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD 640 (960)
T ss_dssp CCHHHHTSCHHHHHHHHHHHHHH-TTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred CCCCcccccHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 1 3467888888887432 3467899999999998888652 67788889999999998743221122233
Q ss_pred HHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCchhhhhhhchHHHHH
Q 001062 684 VIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAVRNKVLPQAL 734 (1167)
Q Consensus 684 ~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~~~~~l~~l~ 734 (1167)
.+++.+...+........+.++++++.+.+. . .....+...++|.++
T Consensus 641 ~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~---~-~~~~~~~~~~~~~l~ 687 (960)
T 1wa5_C 641 SMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ---S-ATIPESIKPLAQPLL 687 (960)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH---C-SSCCTTTGGGHHHHT
T ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh---c-cCCCHHHHHHHHHHc
Confidence 3444444445444445778889988888876 2 223345666666655
No 18
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.85 E-value=1.4e-17 Score=212.02 Aligned_cols=665 Identities=11% Similarity=0.111 Sum_probs=416.9
Q ss_pred ChhHHhHhHHHHHHHhcccccCCChH----HHHHHHHHHHHhcC-----CCChhHHHHHHHHHHHhhhhcChhhHHHHHH
Q 001062 17 DKDFRYMATSDLLNELNKESFKADAD----LEVKLSNIVVQQLD-----DVAGDVSGLAVKCLAPLVKKVSEPRVVEMTD 87 (1167)
Q Consensus 17 d~d~R~mAl~dL~~~l~~~~~~~~~~----~~~~i~~~ll~~L~-----d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~ 87 (1167)
++.+||.|+.-|.+.++ .++++ ....+.+.++..+. +..+-||+....++..++.+..+..|+.+++
T Consensus 56 ~~~vr~fa~~~L~~~I~----~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~ 131 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVR----EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFA 131 (980)
T ss_dssp CHHHHHHHHHHHHHHHH----HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHH
T ss_pred CHHHHHHHHHHHHHHHH----hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHH
Confidence 78999999999999998 34555 56666666666654 2456799999999999999877788999999
Q ss_pred HHHHHhcCCCcchhcHHHHHHHHHH---hhcCC-----ch----h----HHH----HHHHHHHHHHHhhhc--cCCChhH
Q 001062 88 KLCIKLLNGKDQHRDIASIALKTII---AEVTT-----SS----L----AQS----IHTSLTPQLTKGITL--KDMNTEI 145 (1167)
Q Consensus 88 ~L~~~~~~~~~~~r~~a~~aL~~~~---~~~~~-----~~----~----~~~----~~~~i~p~Ll~~l~~--~~~~~~v 145 (1167)
.|++.+..++. +......|+.+- +++.. ++ . ... -+..+.+..+..|.. ...++.+
T Consensus 132 ~l~~~~~~~~~--~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l 209 (980)
T 3ibv_A 132 SLQGVIAASSQ--SEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGT 209 (980)
T ss_dssp HHHHHHHHHCC--HHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCCCh--hHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHH
Confidence 99998865432 122223333333 55421 10 0 000 122334444444432 0125678
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH-HHHHHHHHH-----HHHHhhc
Q 001062 146 RCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD-DLLAKATIE-----VVRNLRS 219 (1167)
Q Consensus 146 ~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~-~~~~~l~~~-----l~~~l~~ 219 (1167)
+..++++++..+......+. ..+.+++.++..+.+ +.+|..|+.||..+.....+ +...+++.. ++..+..
T Consensus 210 ~~~~L~~l~s~i~wi~~~~i-~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~ 286 (980)
T 3ibv_A 210 VGLCLQVYAQWVSWININLI-VNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQE 286 (980)
T ss_dssp HHHHHHHHHHHTTTSCHHHH-HCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhcCHHhh-hcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhc
Confidence 88888888888875443322 115788888888865 68999999999999875433 211122221 1222222
Q ss_pred CCCChHHHHHHHHHHHHHHHH------hh--------hhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh-
Q 001062 220 KGAKPEMIRTNIQMVGALSRA------VG--------YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR- 284 (1167)
Q Consensus 220 ~~~~~~~r~~~~~~l~~l~~~------~~--------~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~- 284 (1167)
.+.+.+.++.....+..++.. .+ .+..+++..++|.++.++.+ +++++...++.++..++..
T Consensus 287 ~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~---~~deVs~~t~~Fw~~~l~~~ 363 (980)
T 3ibv_A 287 QSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD---DYDETSTAVFPFLSDLLVSL 363 (980)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC---SSHHHHHTTHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHHHHH
Confidence 123455555555555444332 11 02336788999999999988 7889988888888777754
Q ss_pred --------CCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccc------------------hhhc------
Q 001062 285 --------CPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEE------------------DESA------ 332 (1167)
Q Consensus 285 --------~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d------------------~~~~------ 332 (1167)
.+..++|+++++++.+.+-++|++++..++++|+|+ ++++.+ ...+
T Consensus 364 ~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed--~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i 441 (980)
T 3ibv_A 364 RKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE--EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAI 441 (980)
T ss_dssp HHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST--HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhH--HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 234467999999999999999987643221111111 011100 0000
Q ss_pred -----CCCCCCCCcchHHHHHHHHHHHHHHhcCChhhH------HHHHHHhhHHHhhh-----ccCChhHHHHHHHHHHH
Q 001062 333 -----NEYTDDEDASWKVRRAAAKCLAALIVSRPEMLS------KLYEEACPKLIDRF-----KEREENVKMDVFNTFIE 396 (1167)
Q Consensus 333 -----~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~------~~~~~i~p~L~~~l-----~d~~~~vr~~~~~~l~~ 396 (1167)
...+.....+|+.++||..+++.+.++.+.... +....+++.+...+ ++.++.||...+.+++.
T Consensus 442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~r 521 (980)
T 3ibv_A 442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVR 521 (980)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 000011235799999999999999887542110 11112223332222 36788999888888776
Q ss_pred HHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHH--HhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHH
Q 001062 397 LVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINR--QLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEK 474 (1167)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~--~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~ 474 (1167)
..+-... . .+++|.+++.+.. .+.+++.++|..|..+|..+++.++..+.+|++.++..+..
T Consensus 522 ys~~~~~-----------~-----~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~ 585 (980)
T 3ibv_A 522 YASFFDY-----------E-----SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGD 585 (980)
T ss_dssp TGGGGGT-----------C-----CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTG
T ss_pred HHHHHhc-----------C-----chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHH
Confidence 5443321 0 2467888888888 78888889999999999999999998899999999998888
Q ss_pred hcccCCC---Cc----------------hHHHHHHHHHHHHhccCC--CCchhhhhHhhHHHHHHHhc----CC----ch
Q 001062 475 SLNDKSS---TS----------------NLKIEALTFTRLVLSSHS--PPVFHPYIKALSSPVLAAVG----ER----YY 525 (1167)
Q Consensus 475 ~l~d~~~---~~----------------~~~~~al~~l~~l~~~~~--~~~~~~~l~~ll~~l~~~l~----d~----~~ 525 (1167)
.|.-+.. .. +-+..-+..++.++...+ ++.-..++..+++.+...++ .. ..
T Consensus 586 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~ 665 (980)
T 3ibv_A 586 LLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALEN 665 (980)
T ss_dssp GGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CH
T ss_pred hhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccH
Confidence 8773210 00 013334556777776543 23344577888777666553 11 11
Q ss_pred H-HHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhH
Q 001062 526 K-VTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACL 604 (1167)
Q Consensus 526 ~-v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l 604 (1167)
. .....+.++|.+.+.+...... .......+.++++.++..+..-..+..||+++..++..++..+|..+.|+++.++
T Consensus 666 ~~~i~~~i~al~~lakgf~~~~~~-~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i 744 (980)
T 3ibv_A 666 IISVYCSLMAIGNFAKGFPARGSE-EVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLI 744 (980)
T ss_dssp HHHHHHHHHHHHHHHHTSCSCC-C-CCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcccCC-CCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHH
Confidence 1 2235677778888766542100 0013446778888887777654567899999999999999999998989999999
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHH----HHHHHHHH---------hhHHHHHHHHHHHHHHHH
Q 001062 605 PVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIA----ELTAFLRK---------ANRALRQATLGTMNSLVV 671 (1167)
Q Consensus 605 ~~L~~~L~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~----~L~~~L~~---------~~~~lr~~al~~L~~l~~ 671 (1167)
..++...+... -...+..++.++.. .+.++.+++..+++ .+...|.. ..+.+|++-+..+..++.
T Consensus 745 ~~ll~~~~~~e-~~~fL~l~~qli~~-f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~ 822 (980)
T 3ibv_A 745 SILLNSIDMNE-LVDVLSFISQLIHI-YKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLN 822 (980)
T ss_dssp HHHHHHCCTTT-HHHHHHHHHHHHHH-TTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99885443221 23467777777632 12334444444444 33344432 235688888889998888
Q ss_pred HhCCC--CCh---hhHHHHHHHHhhhcC-CCchhhHHHHHHHHHHHhhc
Q 001062 672 AYGDK--IGA---SAYEVIIVELSTLIS-DSDLHMTALALELCCTLMAD 714 (1167)
Q Consensus 672 ~~~~~--~~~---~~~~~~l~~l~~~l~-~~d~~~~~~al~~l~~l~~~ 714 (1167)
+.-.. ++. ..++.++..+...-. -+|......++.++..+++.
T Consensus 823 ~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~ 871 (980)
T 3ibv_A 823 KGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSL 871 (980)
T ss_dssp TTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC
T ss_pred CCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 54333 232 346777777776533 37888999999999999876
No 19
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.83 E-value=4e-16 Score=203.29 Aligned_cols=633 Identities=11% Similarity=0.095 Sum_probs=380.9
Q ss_pred CchHHH---HHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHhhh-
Q 001062 1 MANLQM---AAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVK- 75 (1167)
Q Consensus 1 ~~~~~i---~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~-d~~~~Vr~~A~~~l~~l~~- 75 (1167)
|..+++ ..+++.+.++|++.|-.|..-|.+ + +-.+..... ++..|. +++.+||..|...|...++
T Consensus 1 m~~~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~-~-----~~~p~~w~~----~~~lL~~~~~~~vr~~aa~~L~~~i~~ 70 (971)
T 2x1g_F 1 MEPIDIARLEEAVVSFYRSNSQNQAITHEWLTD-A-----EASPQAWQF----SWQLMQLGKSQEVQFFGAITLHSKLMK 70 (971)
T ss_dssp ----------CTHHHHHTSTTTC----CHHHHH-T-----TTSTHHHHH----HHHHTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHcCCCHHHHHHHHHHHHH-H-----HcCHHHHHH----HHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 444444 355566788999999999888764 2 223333333 233332 6788999999999998775
Q ss_pred ---hcChhhHHHHHHHHHHHhcC---CCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccC----CChhH
Q 001062 76 ---KVSEPRVVEMTDKLCIKLLN---GKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKD----MNTEI 145 (1167)
Q Consensus 76 ---~~~~~~~~~l~~~L~~~~~~---~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~----~~~~v 145 (1167)
.++++....+-+.|++.+.+ +...+|...+.+|..++...-+ .+ ..+++.+++.++.++ .++..
T Consensus 71 ~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~W----p~~l~~l~~~~~~~~~~~~~~~~~ 144 (971)
T 2x1g_F 71 HWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EW----PGAIEEVINTFQNQRMPNVSADVQ 144 (971)
T ss_dssp CGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C----------HHHHHHHHTC----CHHHH
T ss_pred cHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cc----cHHHHHHHHHHhccccccCCCHHH
Confidence 35555555555555555432 2345777788888887765432 12 234555555554320 02457
Q ss_pred HHHHHHHHHHHHHHhc------------cchhHHHHHHHHHHhhhhcCC-h-------HHHHHHHHHHHHHHHhh--cCH
Q 001062 146 RCECLDILCDVLHKFG------------NLMSNDHERLLSALLPQLSAN-Q-------ASVRKKSVSCIASLASS--LSD 203 (1167)
Q Consensus 146 ~~~~~~~L~~l~~~~g------------~~l~~~~~~l~~~ll~~l~~~-~-------~~vrk~a~~~l~~l~~~--~~~ 203 (1167)
++.++.+|..+.+... ..+....+.+++.+...+.+. . +.+++.++.|++.+..+ ++.
T Consensus 145 ~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~ 224 (971)
T 2x1g_F 145 LWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTI 224 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred HHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCc
Confidence 7888888887775321 123344566666666555421 1 27999999999988773 444
Q ss_pred HHHHHHHHHHHHHhh----------c----CCCChHHHHHHHHHHHHHHHHh-hhhhhcchhhhHHHHHHHhhh---c-C
Q 001062 204 DLLAKATIEVVRNLR----------S----KGAKPEMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTS---A-S 264 (1167)
Q Consensus 204 ~~~~~l~~~l~~~l~----------~----~~~~~~~r~~~~~~l~~l~~~~-~~~~~p~l~~lvp~l~~~l~~---~-~ 264 (1167)
.....+++.++. +. + ...+.+.|+.++.++..+.... +..+.+++..++|.+++.... . .
T Consensus 225 ~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 303 (971)
T 2x1g_F 225 EGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEW 303 (971)
T ss_dssp GGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHh
Confidence 444556676666 41 0 0012468899999999998742 233445666666666653321 0 1
Q ss_pred CCC---hhHHHHHHHHHHHHHHhCCcccc-----------ccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchh
Q 001062 265 END---EELREYSLQALESFLLRCPRDIS-----------SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDE 330 (1167)
Q Consensus 265 e~~---~e~re~al~~l~~l~~~~~~~~~-----------~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~ 330 (1167)
++| ++......+.+..+.+..+..+. +++..+++.++++..+ |.+..++
T Consensus 304 ~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~-~~~~~~~---------------- 366 (971)
T 2x1g_F 304 KRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDK-PGIYPVE---------------- 366 (971)
T ss_dssp SSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC-SSCTTTT----------------
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcC-CCCCCcc----------------
Confidence 133 35666667777777765544332 5677778877776543 2211100
Q ss_pred hcCCCCCCCCcchHHHHHHHHHHHHHHhc---------CC---hhhHHHHHHHhhHHHhhhccCCh--------------
Q 001062 331 SANEYTDDEDASWKVRRAAAKCLAALIVS---------RP---EMLSKLYEEACPKLIDRFKEREE-------------- 384 (1167)
Q Consensus 331 ~~~~~~dddd~sw~vR~aA~~~l~~li~~---------~~---~~l~~~~~~i~p~L~~~l~d~~~-------------- 384 (1167)
+ +|+..+...+..+... .+ ..+.+++..+++.++.++.-+++
T Consensus 367 --------~----~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f 434 (971)
T 2x1g_F 367 --------E----SCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECF 434 (971)
T ss_dssp --------C----TTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHH
T ss_pred --------h----hhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHH
Confidence 0 2444444444444321 01 23346777777777776521111
Q ss_pred -hHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhcc-----CChhhHHHHHHHHHHHHHhcC
Q 001062 385 -NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE-----KSIKTKVGAFSVLRELVVVLP 458 (1167)
Q Consensus 385 -~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~-----~~~~~r~~~~~~l~~l~~~~~ 458 (1167)
+.|.++..++..+....+ ...++.+++.+...+.. .+|+.|++++.+++.+++..+
T Consensus 435 ~~~R~~~~~~l~~~~~~~~------------------~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~ 496 (971)
T 2x1g_F 435 RCYRQDISDTFMYCYDVLN------------------DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFG 496 (971)
T ss_dssp HHHHHHHHHHHHHHHTTCT------------------THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHh------------------HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcC
Confidence 234445555544443221 13445555555555543 678999999999999988776
Q ss_pred chhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHH
Q 001062 459 DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGEL 538 (1167)
Q Consensus 459 ~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l 538 (1167)
....++++.+++.+ ..+.....+..+|..++.+++.+.+....+ ..|++.+++.++.++ + ++|+..|..++..+
T Consensus 497 ~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l 570 (971)
T 2x1g_F 497 GEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMEN--PAYIPPAINLLVRGL-N--SSMSAQATLGLKEL 570 (971)
T ss_dssp ----CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHH
Confidence 55567788888844 344411125689999999999887654321 268889999999988 4 68999999999999
Q ss_pred HHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC-cccccchhhhHHHHHHhhc----C
Q 001062 539 VRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG-DNLGAELPACLPVLVDRMG----N 613 (1167)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g-~~l~~~~~~~l~~L~~~L~----~ 613 (1167)
++.++. .+.||++.++..+.+.+.+.+.+.+.+..++.|+|.++...+ +...+++..+++.++.++. +
T Consensus 571 ~~~~~~-------~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 571 CRDCQL-------QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHCHH-------HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-------hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 987654 478999999999999988655678999999999999998765 4555677777776665542 2
Q ss_pred ----chhhHHHHHHH---HHHhcCCC------------CCchhhHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Q 001062 614 ----EITRLTAVKAF---AVIAASPL------------HIDLTCVLEHVIAELTAFLRKA--NRALRQATLGTMNSLVVA 672 (1167)
Q Consensus 614 ----e~~r~~a~~al---~~i~~~~~------------~~~~~~~~~~~l~~L~~~L~~~--~~~lr~~al~~L~~l~~~ 672 (1167)
+..+...+.++ +.++.... ...+.++.+.+++.+...+... +..+...++.+++.++..
T Consensus 644 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 644 DSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 22233344444 43332100 1235778888999888888653 568899999999999998
Q ss_pred hCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhc
Q 001062 673 YGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1167)
Q Consensus 673 ~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1167)
.+..+.+ .++.+++.+...+.... . ...+.+++.++..
T Consensus 724 ~~~~~~p-~l~~~~~~l~~~~~~~~-~--~~~l~l~~~~i~~ 761 (971)
T 2x1g_F 724 LRSSFQP-MLQDLCLFIVASFQTRC-C--APTLEISKTAIVM 761 (971)
T ss_dssp HHC--CT-HHHHHHHHHHHHCC--C-C--HHHHHHHHHHHTT
T ss_pred hhhhccc-cHHHHHHHHHHHHhcCC-c--hHHHHHHHHHHHH
Confidence 8776544 46777777666554422 1 4578888888876
No 20
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.81 E-value=7.1e-15 Score=191.69 Aligned_cols=620 Identities=13% Similarity=0.146 Sum_probs=384.0
Q ss_pred HHHHHHHH-hcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHhhh----hcC
Q 001062 5 QMAAILEK-ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL-DDVAGDVSGLAVKCLAPLVK----KVS 78 (1167)
Q Consensus 5 ~i~~ll~~-~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L-~d~~~~Vr~~A~~~l~~l~~----~~~ 78 (1167)
.+..+++. ..++|++.|..|..-|.+ +++ .+..... ++..| .+++.+||..|...|...++ .++
T Consensus 25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~-~~~-----~p~~~~~----~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~ 94 (963)
T 2x19_B 25 NVEKALHQLYYDPNIENKNLAQKWLMQ-AQV-----SPQAWHF----SWQLLQPDKVPEIQYFGASALHIKISRYWSDIP 94 (963)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHH-HHH-----STTHHHH----HHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH-Hhc-----CHHHHHH----HHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCC
Confidence 45566667 557999999999888865 332 1222222 22233 36788999999999998775 355
Q ss_pred hhhHHHHHHHHHHHhcC---CCcchhcHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHhhhcc---CCChhHHHHHHH
Q 001062 79 EPRVVEMTDKLCIKLLN---GKDQHRDIASIALKTIIAE-VTTSSLAQSIHTSLTPQLTKGITLK---DMNTEIRCECLD 151 (1167)
Q Consensus 79 ~~~~~~l~~~L~~~~~~---~~~~~r~~a~~aL~~~~~~-~~~~~~~~~~~~~i~p~Ll~~l~~~---~~~~~v~~~~~~ 151 (1167)
++....+-+.|.+.+.+ +...+|...+.++..++.. .+. -+. .+++.|++.+++. .+++..+..++.
T Consensus 95 ~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~--~Wp----~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 168 (963)
T 2x19_B 95 TDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPD--AWP----CAVADMVRLFQAEDSPVDGQGRCLALLE 168 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTT--TST----THHHHHHHHHCC------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCcc--ccc----hHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 55555665666665543 2345777777788877654 232 122 4555666555431 013457788888
Q ss_pred HHHHHHHHh-------------ccchhHHHHHHHHHHhhhhcCChH--HHHHHHHHHHHHHHhhcCHHH--HHHHHHHHH
Q 001062 152 ILCDVLHKF-------------GNLMSNDHERLLSALLPQLSANQA--SVRKKSVSCIASLASSLSDDL--LAKATIEVV 214 (1167)
Q Consensus 152 ~L~~l~~~~-------------g~~l~~~~~~l~~~ll~~l~~~~~--~vrk~a~~~l~~l~~~~~~~~--~~~l~~~l~ 214 (1167)
+|..+.+.. ...+....+.+++.+...+.+... .+++.++.|+..... .+... ...+++.++
T Consensus 169 iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~ 247 (963)
T 2x19_B 169 LLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAF 247 (963)
T ss_dssp HHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHH
T ss_pred HHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHH
Confidence 888887532 223345677787777777765432 488999999977665 33222 256777777
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHh-hhhhhcchhhhHHHHHHH-------hhhcCCCChhHHHHHHHHHHHHHHhCC
Q 001062 215 RNLRSKGAKPEMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDY-------CTSASENDEELREYSLQALESFLLRCP 286 (1167)
Q Consensus 215 ~~l~~~~~~~~~r~~~~~~l~~l~~~~-~~~~~p~l~~lvp~l~~~-------l~~~~e~~~e~re~al~~l~~l~~~~~ 286 (1167)
+.+.+ .+.|..++.++..++... +..+.+++..+++.+++. ... +|.+......+.+..+....+
T Consensus 248 ~~l~~----~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~d~~~~~~~~~l~~~~~~~~~ 320 (963)
T 2x19_B 248 AALQD----SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQN---GDMETSHGICRIAVALGENHS 320 (963)
T ss_dssp HHTTS----TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCC----chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhH
Confidence 77643 357899999999998742 233455666666655543 222 344444444466666655444
Q ss_pred ccc------cccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhc-
Q 001062 287 RDI------SSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS- 359 (1167)
Q Consensus 287 ~~~------~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~- 359 (1167)
..+ .+++..+++.++++..+ |.+... ++ .++..+...+..++..
T Consensus 321 ~~l~~~~~~~~~~~~~l~~ll~~~~~-~~~~~~-~~---------------------------~v~~~~l~fw~~l~~~~ 371 (963)
T 2x19_B 321 RALLDQVEHWQSFLALVNMIMFCTGI-PGHYPV-NE---------------------------TTSSLTLTFWYTLQDDI 371 (963)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHTC-SSCTTT-TC---------------------------GGGGGGHHHHHHHHHHH
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcC-CCCCCc-hh---------------------------hhhhhhHHHHHHHHHHH
Confidence 333 25666777777776542 321100 00 1111222222222220
Q ss_pred ----------CChhhHHHHHHHhhHHHhhhccCCh---------------hHHHHHHHHHHHHHHhhCCCCCCccCCCCC
Q 001062 360 ----------RPEMLSKLYEEACPKLIDRFKEREE---------------NVKMDVFNTFIELVRQTGNVTKGQIDNNEL 414 (1167)
Q Consensus 360 ----------~~~~l~~~~~~i~p~L~~~l~d~~~---------------~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~ 414 (1167)
..+.+.+++..+++.++.++..+++ ..|.++..++..+.+..+
T Consensus 372 ~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~------------ 439 (963)
T 2x19_B 372 LSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG------------ 439 (963)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT------------
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc------------
Confidence 0122345666677777766632211 113333334433333221
Q ss_pred chHHHHHHHHHHHHHHHHHHh----ccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHH
Q 001062 415 NPRWLLKQEVSKIVKSINRQL----REKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEAL 490 (1167)
Q Consensus 415 ~p~~~l~~~~~~l~~~l~~~L----~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al 490 (1167)
...++.+++.+...+ .+.+|+.+++++.+++.+++.......++++.+++.+.. +.+. +..++..++
T Consensus 440 ------~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~--~~~vr~~~~ 510 (963)
T 2x19_B 440 ------AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISIS--NVQLADTVM 510 (963)
T ss_dssp ------HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCC--SHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCC--cHHHHHHHH
Confidence 234566666666666 566899999999999999987765555667777775443 3322 467999999
Q ss_pred HHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhc
Q 001062 491 TFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN 570 (1167)
Q Consensus 491 ~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~ 570 (1167)
.+++.+.+....+ .++++.+++.+..++++ ++|+..|..++..+++.++. .+.||++.+++.+...+..
T Consensus 511 ~~l~~~~~~l~~~--~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~-------~l~p~~~~il~~l~~~l~~ 579 (963)
T 2x19_B 511 FTIGALSEWLADH--PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY-------DLPPYAANIVAVSQDVLMK 579 (963)
T ss_dssp HHHHHTHHHHHHC--HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG-------GCTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHhcc
Confidence 9999886532211 26889999999999976 68999999999999987543 5789999999999888875
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcC-cccccchhhhHHHHHHhhc-------CchhhH---HHHHHHHHHhcCCC-------
Q 001062 571 QDQDQEVKECAISCMGLVISTFG-DNLGAELPACLPVLVDRMG-------NEITRL---TAVKAFAVIAASPL------- 632 (1167)
Q Consensus 571 ~d~~~~vr~~Ai~alg~l~~~~g-~~l~~~~~~~l~~L~~~L~-------~e~~r~---~a~~al~~i~~~~~------- 632 (1167)
.+.+.+.+..++.++|.++...+ +...+++..+++.+..++. ++..+. ..+.+++.++.+..
T Consensus 580 ~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 659 (963)
T 2x19_B 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDD 659 (963)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC--
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 55678899999999999998776 5666788888888877653 222232 45566665553211
Q ss_pred --------------CCchhhHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCC
Q 001062 633 --------------HIDLTCVLEHVIAELTAFLRK--ANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDS 696 (1167)
Q Consensus 633 --------------~~~~~~~~~~~l~~L~~~L~~--~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~ 696 (1167)
+..+.++...+++.+...+.. .+..+...++.++..++..++..+. +.+++++..+.......
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~ 738 (963)
T 2x19_B 660 HEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-PMVPQLCEMLGRMYSTI 738 (963)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-GGHHHHHHHHHHHHHHS
T ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-ccHHHHHHHHHHHHHcC
Confidence 112456778888888777754 3567889999999999988876553 34555555544332211
Q ss_pred chhhHHHHHHHHHHHhh
Q 001062 697 DLHMTALALELCCTLMA 713 (1167)
Q Consensus 697 d~~~~~~al~~l~~l~~ 713 (1167)
. ....+.+++.++.
T Consensus 739 ~---~~~~l~l~~~li~ 752 (963)
T 2x19_B 739 P---QASALDLTRQLVH 752 (963)
T ss_dssp C---CHHHHHHHHHHHH
T ss_pred C---ccHHHHHHHHHHH
Confidence 1 1245566666665
No 21
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.81 E-value=2e-15 Score=192.31 Aligned_cols=671 Identities=11% Similarity=0.113 Sum_probs=411.3
Q ss_pred HHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcC----CC-----ChhHHHHHHHHHHHhhhhcC
Q 001062 8 AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD----DV-----AGDVSGLAVKCLAPLVKKVS 78 (1167)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~----d~-----~~~Vr~~A~~~l~~l~~~~~ 78 (1167)
.++++ +.++.+||.|+.-|.+.+++.|..++++....+.+.++..+. +| .+-|++....+++.++.+.-
T Consensus 55 ~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~ 132 (1023)
T 4hat_C 55 QILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEW 132 (1023)
T ss_dssp HHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhC
Confidence 44443 557899999999999999999888888777777777776653 33 35678889999999998877
Q ss_pred hhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhc---CCc-----------hhHHHHHHHHHHHHHHhhhccCCChh
Q 001062 79 EPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEV---TTS-----------SLAQSIHTSLTPQLTKGITLKDMNTE 144 (1167)
Q Consensus 79 ~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~---~~~-----------~~~~~~~~~i~p~Ll~~l~~~~~~~~ 144 (1167)
+..|+.+++.|++.+.++ ..........|+.+.+++ ..+ +.....+..+++.+.+.+++.. +.+
T Consensus 133 p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-~~~ 210 (1023)
T 4hat_C 133 PQNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-SSS 210 (1023)
T ss_dssp TTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SCH
T ss_pred hhhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHH
Confidence 778999999999988543 334666777777777763 211 1112224445555555555443 567
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHh-hhhcCChHHHHHHHHHHHHHHHhh-c-CH-----HHH----HHHHHH
Q 001062 145 IRCECLDILCDVLHKFGNLMSNDHERLLSALL-PQLSANQASVRKKSVSCIASLASS-L-SD-----DLL----AKATIE 212 (1167)
Q Consensus 145 v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll-~~l~~~~~~vrk~a~~~l~~l~~~-~-~~-----~~~----~~l~~~ 212 (1167)
+...+++++...+........ ..+.+++.++ ..+.+ +.+|..|+.|+..++.. . ++ +.+ ..+++.
T Consensus 211 l~~~~L~~l~s~l~WI~i~~i-~~~~ll~~l~~~~L~~--~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~ 287 (1023)
T 4hat_C 211 LIVATLESLLRYLHWIPYRYI-YETNILELLSTKFMTS--PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQ 287 (1023)
T ss_dssp HHHHHHHHHHHHTTTSCTHHH-HSSSHHHHHHTHHHHS--HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHh-cchhHHHHHHHHHcCC--HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHH
Confidence 778888888888775433211 1134677777 66643 57999999999999873 2 12 122 233332
Q ss_pred H-H----------HHhhcC-CCChHHHHHHHHHHHHHHHHhhhhhh--cchhhh----HHHHHHHhhhcCCCChhHHHHH
Q 001062 213 V-V----------RNLRSK-GAKPEMIRTNIQMVGALSRAVGYRFG--PHLGDT----VPVLIDYCTSASENDEELREYS 274 (1167)
Q Consensus 213 l-~----------~~l~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~--p~l~~l----vp~l~~~l~~~~e~~~e~re~a 274 (1167)
+ . ..+... ..+.+..+....++..+.+.....+. |+...+ +..++.+... +|.|+-+.|
T Consensus 288 l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~---~d~ei~~~t 364 (1023)
T 4hat_C 288 IATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKI---EERELFKTT 364 (1023)
T ss_dssp HHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTS---SCHHHHHHH
T ss_pred HHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCC---CcHHHHHHH
Confidence 2 0 111111 11234444555666666665443333 333333 3355555445 677888888
Q ss_pred HHHHHHHHHhC------CccccccHHHHHHHHHHhhccCCCCCCCCCCCCc----cc-ccccccch----h---------
Q 001062 275 LQALESFLLRC------PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSD----DE-AYEEEEED----E--------- 330 (1167)
Q Consensus 275 l~~l~~l~~~~------~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~----~~-~~~~~~d~----~--------- 330 (1167)
+..+..+.... ...++|++.+++.++.+-+.|.+...--++|+++ -+ |.|+.+.+ +
T Consensus 365 l~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~ 444 (1023)
T 4hat_C 365 LDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN 444 (1023)
T ss_dssp HHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccC
Confidence 88888887632 2347789999999999999986632100111111 00 00000000 0
Q ss_pred hcCC-------C---CCCCCcchHHHHHHHHHHHHHHhcCCh-hhHHHHHHHhhHHHhhhc-----cCChhHHHHHHHHH
Q 001062 331 SANE-------Y---TDDEDASWKVRRAAAKCLAALIVSRPE-MLSKLYEEACPKLIDRFK-----EREENVKMDVFNTF 394 (1167)
Q Consensus 331 ~~~~-------~---~dddd~sw~vR~aA~~~l~~li~~~~~-~l~~~~~~i~p~L~~~l~-----d~~~~vr~~~~~~l 394 (1167)
.++- . -+..+.+|+.|+|++-|+|++..+..+ ...+++..++|.|++... |....||..+..++
T Consensus 445 ~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~l 524 (1023)
T 4hat_C 445 VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVV 524 (1023)
T ss_dssp HHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHH
Confidence 0000 0 012236799999999999999987653 466788888888887653 23334555555666
Q ss_pred HHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchh--------Hhhhh
Q 001062 395 IELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCL--------ADHIG 466 (1167)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l--------~~~l~ 466 (1167)
+...+-.. .-.+++++++..+.+.+.++++++...|+.+|..+++.+...+ .+|++
T Consensus 525 Gry~~wl~----------------~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~ 588 (1023)
T 4hat_C 525 GQYPRFLK----------------AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ 588 (1023)
T ss_dssp HTCHHHHH----------------HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH
T ss_pred HHHHHHHh----------------ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHH
Confidence 55433221 0135789999999999988888899999999999999887766 46899
Q ss_pred hhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCc-hhhhhHhhHHHHHHHhcC--------Cc-------hHHHHH
Q 001062 467 SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPV-FHPYIKALSSPVLAAVGE--------RY-------YKVTAE 530 (1167)
Q Consensus 467 ~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~-~~~~l~~ll~~l~~~l~d--------~~-------~~v~~~ 530 (1167)
.++..+.+++.+- ...-+...+..++.++...+... ...++..+++.+...++. +. -+....
T Consensus 589 ~il~~l~~~~~~l--~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~ 666 (1023)
T 4hat_C 589 TIIRDIQKTTADL--QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIAN 666 (1023)
T ss_dssp HHHHTHHHHHTTS--CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHH
Confidence 9998888887643 34556778889999998876444 344778887777655531 11 133445
Q ss_pred HHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcC---------------CCCHH------HHHHHHHHHHHHH
Q 001062 531 ALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ---------------DQDQE------VKECAISCMGLVI 589 (1167)
Q Consensus 531 al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~---------------d~~~~------vr~~Ai~alg~l~ 589 (1167)
-+++.+.++..+|+ .|.|++..+++.+++..+.- ...+. +|...+.-+..++
T Consensus 667 il~~~~~v~~~lg~-------~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i 739 (1023)
T 4hat_C 667 IIKTNVAVCTSMGA-------DFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYI 739 (1023)
T ss_dssp HHHHHHHHHHHHGG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777766655 58899999998887653210 00111 1222223333333
Q ss_pred HhcCc--c-cccchhhhHHHHHHhh-cC-chhhHH-HHHHHHHHhcCCCCCchhhHHHHHHHHH----HHHHHH---hhH
Q 001062 590 STFGD--N-LGAELPACLPVLVDRM-GN-EITRLT-AVKAFAVIAASPLHIDLTCVLEHVIAEL----TAFLRK---ANR 656 (1167)
Q Consensus 590 ~~~g~--~-l~~~~~~~l~~L~~~L-~~-e~~r~~-a~~al~~i~~~~~~~~~~~~~~~~l~~L----~~~L~~---~~~ 656 (1167)
....+ . ....++.++..++.-- ++ ...|.. .+.....++..- +..+.+.++.++..+ .+.+.+ +.+
T Consensus 740 ~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~-~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~P 818 (1023)
T 4hat_C 740 SKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKV-GHMIPQGVILILQSVFECTLDMINKDFTEYP 818 (1023)
T ss_dssp HHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHH-GGGCHHHHHHHHHHHHHHHHHHHSSCSSSSH
T ss_pred hcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhcccccCh
Confidence 33211 0 1112344444333322 22 234543 344444555321 122345555555444 344443 578
Q ss_pred HHHHHHHHHHHHHHHHhCCC---CChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhc
Q 001062 657 ALRQATLGTMNSLVVAYGDK---IGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1167)
Q Consensus 657 ~lr~~al~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1167)
..|..=++.+..+..++... +++..+..+++.+.-.+..+.+.+...++.++..++.+
T Consensus 819 e~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~ 879 (1023)
T 4hat_C 819 EHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKN 879 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 89999999999998877543 45556777888777777778888888888777777653
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.77 E-value=1.1e-15 Score=186.59 Aligned_cols=479 Identities=12% Similarity=0.137 Sum_probs=329.3
Q ss_pred hHHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhH
Q 001062 3 NLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV 82 (1167)
Q Consensus 3 ~~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~ 82 (1167)
++.+..+++-+.++|..+|.++-..+....+. +++...-+++.+.+.|+|+|+.||..|+++++.+. .++.+
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-----~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~ 119 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS-----QPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKIT 119 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH-----SHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-----CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHH
Confidence 34456677778899999997766666655442 23444556788889999999999999999999875 55667
Q ss_pred HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhcc
Q 001062 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1167)
Q Consensus 83 ~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~ 162 (1167)
+.+++.+...+.+.++.+|..|+.|+..++...|. .... ..++|.+...|+++ ++.|+..|+.+|+++....+.
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~--~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVED--QGFLDSLRDLIADS--NPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHH--HHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hccc--ccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCC
Confidence 88889999999888889999999999999986554 2111 35778888888765 689999999999999876553
Q ss_pred c-hhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH-
Q 001062 163 L-MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA- 240 (1167)
Q Consensus 163 ~-l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~- 240 (1167)
. .....+..+..++..+.+.++-.+...+.+++.++.. ++.....+++.+...+++.+. .++..++.++..+...
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-~~~~~~~~l~~l~~~l~~~~~--~V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-DDREAQSICERVTPRLSHANS--AVVLSAVKVLMKFLELL 270 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-SHHHHHHHHHHHTTCSCSSTT--HHHHHHHHHHHHSCCSC
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHhhcc
Confidence 2 1122344455556666556666677777776655533 233456677777777776653 7888888888777643
Q ss_pred --hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCC
Q 001062 241 --VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDS 318 (1167)
Q Consensus 241 --~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~ 318 (1167)
.+..+...++.+.+.+...+ + .++++|..++.++..++...|..+.+++..+ +.
T Consensus 271 ~~~~~~~~~~~~~~~~~L~~L~-~---~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~-------~~------------- 326 (591)
T 2vgl_B 271 PKDSDYYNMLLKKLAPPLVTLL-S---GEPEVQYVALRNINLIVQKRPEILKQEIKVF-------FV------------- 326 (591)
T ss_dssp CBTTBSHHHHHHHTHHHHHHHT-T---SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT-------SC-------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHh-c---CCccHHHHHHHHHHHHHHhChHHHHHHHHhh-------ee-------------
Confidence 23334444556667666543 4 5789999999999999988776555433211 00
Q ss_pred cccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHH
Q 001062 319 DDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELV 398 (1167)
Q Consensus 319 ~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~ 398 (1167)
..+|. |.||+.|+..+..+.... . .+.+++.|.+.+++.++.+|.+++.+++.+.
T Consensus 327 ------------------~~~d~-~~Ir~~al~~L~~l~~~~--n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la 381 (591)
T 2vgl_B 327 ------------------KYNDP-IYVKLEKLDIMIRLASQA--N----IAQVLAELKEYATEVDVDFVRKAVRAIGRCA 381 (591)
T ss_dssp ------------------CTTSC-HHHHHHHHHHHHHTCCSS--T----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred ------------------ccCCh-HHHHHHHHHHHHHHCChh--h----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 00112 799999999888765432 2 3456666666778888999999999998876
Q ss_pred HhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhccc
Q 001062 399 RQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLND 478 (1167)
Q Consensus 399 ~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d 478 (1167)
... ......+++.+.+.+++....++..++..+..++...|.. ...+++.+.+.+.+
T Consensus 382 ~~~-------------------~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~----~~~~v~~L~~~l~~ 438 (591)
T 2vgl_B 382 IKV-------------------EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK----YESIIATLCENLDS 438 (591)
T ss_dssp TTC-------------------HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS----CCTTHHHHHHTTTT
T ss_pred HhC-------------------hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch----HHHHHHHHHHHHHh
Confidence 542 1233556677777787877788888888899998877654 24556667777765
Q ss_pred CCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchH
Q 001062 479 KSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ 558 (1167)
Q Consensus 479 ~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~ 558 (1167)
.. .+.++..+++++|.+..... ..+.++..+...+.+....++..++.++..+...... ...
T Consensus 439 ~~-~~~~~~~~~wilGey~~~~~------~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~-----------~~~ 500 (591)
T 2vgl_B 439 LD-EPDARAAMIWIVGEYAERID------NADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS-----------ETQ 500 (591)
T ss_dssp CC-SHHHHHHHHHHHHTTCTTCT------THHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS-----------TTH
T ss_pred cc-CHHHHHHHHHHHHccccccc------CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch-----------HHH
Confidence 32 45678888888887654321 1234555555566677789999999999888754311 123
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 001062 559 PIYNAIMSRLTNQDQDQEVKECAISCMGLV 588 (1167)
Q Consensus 559 ~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l 588 (1167)
+.+..+++.......+.+||++|...++-+
T Consensus 501 ~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 501 ELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 455556666543346789999998776654
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.71 E-value=7.1e-16 Score=182.89 Aligned_cols=399 Identities=14% Similarity=0.128 Sum_probs=280.4
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccc-cCCChHHHH-HHHHHHHHhcCCC-ChhHHHHHHHHHHHhhhhcChhh-
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKES-FKADADLEV-KLSNIVVQQLDDV-AGDVSGLAVKCLAPLVKKVSEPR- 81 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~-~~~~~~~~~-~i~~~ll~~L~d~-~~~Vr~~A~~~l~~l~~~~~~~~- 81 (1167)
+..+++.+.+.|+++|..|+..|.+.+.... ...+..... .+++.+++.|.++ +++||..|+.+|+.++..-.+..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 6778899999999999999999999886322 111111112 6899999999988 89999999999999986332211
Q ss_pred -H--HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 001062 82 -V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1167)
Q Consensus 82 -~--~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~-~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~ 157 (1167)
+ ...++.|...+.++++.+|..++.+|..+....+. ....+. ..++|.|+..+.+. .++.+|..++.+|+.++
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM--CRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH--HHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Confidence 1 34788888888888888999999999998875432 222222 35788888888752 26899999999999998
Q ss_pred HHhccch-hHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH---H-HHHHHHHHHHhhcCCCChHHHHHHHH
Q 001062 158 HKFGNLM-SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL---L-AKATIEVVRNLRSKGAKPEMIRTNIQ 232 (1167)
Q Consensus 158 ~~~g~~l-~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~---~-~~l~~~l~~~l~~~~~~~~~r~~~~~ 232 (1167)
...++.. ......+++.++..+.++++.+|..++.+++.++...++.. . ..+++.++..+.+++ .+.|..++.
T Consensus 179 ~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~ 256 (450)
T 2jdq_A 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND--YKVVSPALR 256 (450)
T ss_dssp CCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC--HHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc--hhHHHHHHH
Confidence 6542211 12335677778888888888999999999999987653321 1 246788888887654 488999999
Q ss_pred HHHHHHHHhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccH-HHHHHHHHHhhccCCCC
Q 001062 233 MVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNF 310 (1167)
Q Consensus 233 ~l~~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l-~~ii~~~~~~l~~dp~~ 310 (1167)
+++.++...+......+ ..++|.+.+.+.+ .++.+|..+++++..++...+.....++ ..+++.+.+.+..
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~---- 329 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSS---PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT---- 329 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH----
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc----
Confidence 99999876554322222 2588999999988 7889999999999999876554444333 2566666666541
Q ss_pred CCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhc-CChhhHHHHH-HHhhHHHhhhccCChhHHH
Q 001062 311 TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLYE-EACPKLIDRFKEREENVKM 388 (1167)
Q Consensus 311 ~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~-~~~~l~~~~~-~i~p~L~~~l~d~~~~vr~ 388 (1167)
..++||+.|+.+++.+... .++....+++ .++|.|++.+++.++.||.
T Consensus 330 ------------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 379 (450)
T 2jdq_A 330 ------------------------------AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379 (450)
T ss_dssp ------------------------------SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 1248999999999999876 4444444433 4789999989888999999
Q ss_pred HHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHH-----HHHHHHHhccCChhhHHHHHHHHHHHH
Q 001062 389 DVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKI-----VKSINRQLREKSIKTKVGAFSVLRELV 454 (1167)
Q Consensus 389 ~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l-----~~~l~~~L~~~~~~~r~~~~~~l~~l~ 454 (1167)
.++.++..++.......+. +.. + ..++...+ ++.+...+.+++..++..++.++..+.
T Consensus 380 ~a~~aL~~l~~~~~~~~~~--~~~---~---~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 380 VALNGLENILRLGEQEAKR--NGT---G---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SCS---C---CCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhc--ccc---c---hhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 9999999888753210000 000 0 01122222 345556666666777777877776665
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.71 E-value=2e-15 Score=178.92 Aligned_cols=398 Identities=11% Similarity=0.106 Sum_probs=270.5
Q ss_pred HHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHH--HHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 001062 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT--SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~--~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~ 163 (1167)
++.|++.+.+++..+|..++.+|+.++........ ..+.+ .++|.|++.|.+++ ++.+|..++.+|..+.......
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHH
Confidence 45555555555555566666666655431111011 22222 57888888887652 5889999999999887632221
Q ss_pred hhH-HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 001062 164 MSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238 (1167)
Q Consensus 164 l~~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~ 238 (1167)
... .....++.+++.++++++.+|..|+.+|+.++...+.. .+ ..+++.++..+++.. +...|+.++.+++.++
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN-RLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Confidence 111 12457888899999999999999999999999765321 22 246788888887533 3589999999999999
Q ss_pred HHh-hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccH-HHHHHHHHHhhccCCCCCCCCCC
Q 001062 239 RAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDNMEE 316 (1167)
Q Consensus 239 ~~~-~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l-~~ii~~~~~~l~~dp~~~~~~~~ 316 (1167)
+.. +..-...+..++|.+++.+.+ +++++|..+.+++..+....+....... ..+++.+.+++.
T Consensus 179 ~~~~~~~~~~~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----------- 244 (450)
T 2jdq_A 179 RGKSPPPEFAKVSPCLNVLSWLLFV---SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM----------- 244 (450)
T ss_dssp CCSSSCCCGGGTGGGHHHHHHHTTC---CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT-----------
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC-----------
Confidence 765 433234457899999999987 7889999999999998865432221111 134555555553
Q ss_pred CCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHH-HHhhHHHhhhccCChhHHHHHHHHHH
Q 001062 317 DSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYE-EACPKLIDRFKEREENVKMDVFNTFI 395 (1167)
Q Consensus 317 d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~-~i~p~L~~~l~d~~~~vr~~~~~~l~ 395 (1167)
+.+|.+|..|+.+++.+....++....+.+ .++|.|++.+++.++.+|..++.+++
T Consensus 245 -----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 245 -----------------------HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301 (450)
T ss_dssp -----------------------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred -----------------------CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 113799999999999998766543333332 47788888888888999999999998
Q ss_pred HHHHhhCCCCCCccCCCCCchHHHHHHHH-HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcC-chhHhhh-hhhHHHH
Q 001062 396 ELVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLP-DCLADHI-GSLIPGI 472 (1167)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~p~~~l~~~~-~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~-~~l~~~l-~~l~~~l 472 (1167)
.+.... + ...+..+ ..+++.+...+.+.++++|..++.+++.++.... ......+ ..++|.+
T Consensus 302 ~l~~~~--------------~-~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L 366 (450)
T 2jdq_A 302 NITAGN--------------R-AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPL 366 (450)
T ss_dssp HHTTSC--------------H-HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHH
T ss_pred HHHcCC--------------H-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence 875421 1 1222222 3566777778888889999999999999987643 3222222 3588999
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHhccCCC------CchhhhhHhh-----HHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 001062 473 EKSLNDKSSTSNLKIEALTFTRLVLSSHSP------PVFHPYIKAL-----SSPVLAAVGERYYKVTAEALRVCGELVR 540 (1167)
Q Consensus 473 ~~~l~d~~~~~~~~~~al~~l~~l~~~~~~------~~~~~~l~~l-----l~~l~~~l~d~~~~v~~~al~~l~~l~~ 540 (1167)
...+.+. +..++..++.++..++..... ....+|...+ ++.+.....++++.++..|+.++..++.
T Consensus 367 ~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 367 CDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999876 568899999999988764211 1233555555 5666666667778899999988888763
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=4.7e-15 Score=180.86 Aligned_cols=503 Identities=11% Similarity=0.112 Sum_probs=330.2
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
-+..+.+.+++.|.+.|--|+.-+.-....++ + .......+++.+.+++.++|+.+.-.+..+++.- ++...-
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~---d---~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l 86 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGK---D---VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIM 86 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTC---C---CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHT
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCC---C---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHH
Confidence 35677888899998888777766665443322 1 1234556777899999999999999998887643 233334
Q ss_pred HHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccch
Q 001062 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1167)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l 164 (1167)
+++.|.+.+.++++.+|..|..+|. .-..+ .+...++|.+.+.+.++ ++.||..|+.++..+....+..+
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~---~i~~~-----~~~~~l~~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMG---CIRVD-----KITEYLCEPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHH---TCCSG-----GGHHHHHHHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH---cCChH-----HHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHHhhChhhc
Confidence 4566666667777777765544444 32222 24566778888888765 69999999999999998665544
Q ss_pred hHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH----HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 165 SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD----LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 165 ~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~----~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
. ...+++.+.+.+.++++.|+..|+.+++.++...++. .....+..++..+.+.+ .-.+...+.+++ +.
T Consensus 157 ~--~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~--~~~q~~il~~l~---~l 229 (591)
T 2vgl_B 157 E--DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT--EWGQIFILDCLS---NY 229 (591)
T ss_dssp H--HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC--HHHHHHHHHHHH---TS
T ss_pred c--cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC--chHHHHHHHHHH---Hh
Confidence 2 2467888899999999999999999999998865432 12344555565555443 123333444333 32
Q ss_pred hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC---CccccccHHHHHHHHHHhhccCCCCCCCCCCC
Q 001062 241 VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC---PRDISSYCDEILHLTLEYLSYDPNFTDNMEED 317 (1167)
Q Consensus 241 ~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~---~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d 317 (1167)
+|.. .+....+++.+...+++ .++.++-.|.+++..+.... |+.++...+.+.+.+...+. +
T Consensus 230 ~~~~-~~~~~~~l~~l~~~l~~---~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~--~--------- 294 (591)
T 2vgl_B 230 NPKD-DREAQSICERVTPRLSH---ANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS--G--------- 294 (591)
T ss_dssp CCCS-HHHHHHHHHHHTTCSCS---STTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT--S---------
T ss_pred CCCC-hHHHHHHHHHHHHHHcC---CChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc--C---------
Confidence 2211 12345677777777777 67889988888887765433 22233334455554443321 0
Q ss_pred CcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHH
Q 001062 318 SDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIEL 397 (1167)
Q Consensus 318 ~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l 397 (1167)
...+|..|.++++.+....|+.+..++..+ ....+|. ..||..++..+..+
T Consensus 295 ------------------------d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~~~~~d~-~~Ir~~al~~L~~l 345 (591)
T 2vgl_B 295 ------------------------EPEVQYVALRNINLIVQKRPEILKQEIKVF----FVKYNDP-IYVKLEKLDIMIRL 345 (591)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----SCCTTSC-HHHHHHHHHHHHHT
T ss_pred ------------------------CccHHHHHHHHHHHHHHhChHHHHHHHHhh----eeccCCh-HHHHHHHHHHHHHH
Confidence 127999999999999998887654433222 1223444 88999988877765
Q ss_pred HHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcc
Q 001062 398 VRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLN 477 (1167)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~ 477 (1167)
.+. +.+..+++.+...+.+.++..|..++..++.++..++ +....+++.+.+.+.
T Consensus 346 ~~~---------------------~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~ 400 (591)
T 2vgl_B 346 ASQ---------------------ANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQ 400 (591)
T ss_dssp CCS---------------------STHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHH
T ss_pred CCh---------------------hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHc
Confidence 432 1245677778888888888999999999999987654 335566677777777
Q ss_pred cCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhc-CCchHHHHHHHHHHHHHHHhccCCccccCCCCccc
Q 001062 478 DKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG-ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPY 556 (1167)
Q Consensus 478 d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~-d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 556 (1167)
+. ...++.+++..++.++...+ +. ...+++.+...+. ...+.++..+++++|++..... .
T Consensus 401 ~~--~~~v~~e~i~~l~~ii~~~p-~~----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~------------~ 461 (591)
T 2vgl_B 401 TK--VNYVVQEAIVVIRDIFRKYP-NK----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERID------------N 461 (591)
T ss_dssp TC--CHHHHHHHHHHHHHHHHHSC-SS----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCT------------T
T ss_pred cc--chHHHHHHHHHHHHHHHHCc-ch----HHHHHHHHHHHHHhccCHHHHHHHHHHHHccccccc------------C
Confidence 65 45788888888998887643 22 1345666777776 4567889999999998854321 1
Q ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhh-c---CchhhHHHHHHHH
Q 001062 557 VQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM-G---NEITRLTAVKAFA 625 (1167)
Q Consensus 557 l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L-~---~e~~r~~a~~al~ 625 (1167)
...++..+++++. +.+.+||..++.++..+....++.. ...+..++++. . +.+.|..|...+.
T Consensus 462 ~~~~l~~l~~~~~--~~~~~vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 462 ADELLESFLEGFH--DESTQVQLTLLTAIVKLFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHHHHHHHSTTCS--SSCHHHHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhcCCChHHHHHHHHHHH
Confidence 3456666665554 4468999999999999876544322 23333333332 1 2246666666544
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.68 E-value=1.2e-12 Score=159.58 Aligned_cols=659 Identities=14% Similarity=0.121 Sum_probs=402.6
Q ss_pred HHhhhcc-CChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHH-HHHHHHHhccCChhhHHHHHHHHHH
Q 001062 375 LIDRFKE-REENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKI-VKSINRQLREKSIKTKVGAFSVLRE 452 (1167)
Q Consensus 375 L~~~l~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l-~~~l~~~L~~~~~~~r~~~~~~l~~ 452 (1167)
+.+.+++ .++.+...+++++..++.... ......+..+ ++.+...+..+++..-.++..++..
T Consensus 54 ~~~l~~~~~~~~~~~~~~r~~~~~~~~~~---------------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (810)
T 3now_A 54 VASLTKVEKDQDIYVNMVHLVAALCENSV---------------ERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQT 118 (810)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTTCH---------------HHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHH
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHhccH---------------HHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3333444 778999999999999986421 0001111110 1355666767777777777777777
Q ss_pred HHHhcCch-----------h----HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHh-hHHHH
Q 001062 453 LVVVLPDC-----------L----ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKA-LSSPV 516 (1167)
Q Consensus 453 l~~~~~~~-----------l----~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~-ll~~l 516 (1167)
+...+.+. + ...+..++..+...+.++.-+...|..++.++..-+..........++.. =+..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 198 (810)
T 3now_A 119 ILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRL 198 (810)
T ss_dssp HHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHH
T ss_pred HHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHH
Confidence 76655211 1 24578888899999998876677888888877766533221111112211 22223
Q ss_pred HHHhc---CC--------chHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 001062 517 LAAVG---ER--------YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCM 585 (1167)
Q Consensus 517 ~~~l~---d~--------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~al 585 (1167)
+.... +. ..+.|..+--++..+.+.++... .=..|-+.+-..+..++.. .+.+-+-.|++++
T Consensus 199 l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~al 271 (810)
T 3now_A 199 LDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDE-----AKARFTDQIDEYIKDKLLA--PDMESKVRVTVAI 271 (810)
T ss_dssp HHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHH-----HHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHH
T ss_pred HHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccch-----hHHHHHHHHHHHHHHHhcc--CChHhHHHHHHHH
Confidence 33222 21 23788888888999988775321 0011222233333344432 3455567788888
Q ss_pred HHHHHhcCccccc-c-hhhhHHHHHHhhcC--chhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHH
Q 001062 586 GLVISTFGDNLGA-E-LPACLPVLVDRMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQA 661 (1167)
Q Consensus 586 g~l~~~~g~~l~~-~-~~~~l~~L~~~L~~--e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~ 661 (1167)
..++....+.-.. + -...++.|+.-+.+ +..+..|+.+++.++.....- .-+...-++.|..++.+.+..+|.-
T Consensus 272 t~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R--~~I~~~gv~~L~~Ll~s~~~~vr~~ 349 (810)
T 3now_A 272 TALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKA--KALCEQGVDILKRLYHSKNDGIRVR 349 (810)
T ss_dssp HHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHH--HTTHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHH--HHHHHcCcHHHHHHHcCCCHHHHHH
Confidence 8876432211111 1 23556666666644 446788999999977432111 1122333478888888778889999
Q ss_pred HHHHHHHHHHHhC-----CCCChhhHHHHHHHHhhhcCCC--chhhHHHHHHHHHHHhhcccCCCchhhhh--hhchHHH
Q 001062 662 TLGTMNSLVVAYG-----DKIGASAYEVIIVELSTLISDS--DLHMTALALELCCTLMADKRSSPNVGLAV--RNKVLPQ 732 (1167)
Q Consensus 662 al~~L~~l~~~~~-----~~~~~~~~~~~l~~l~~~l~~~--d~~~~~~al~~l~~l~~~~~~~p~~~~~~--~~~~l~~ 732 (1167)
|+.+|+.+....+ ..+....+++++..+..++.++ |...+..+...|..++.. |+..... ...++|.
T Consensus 350 Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~----~~vk~~lv~d~g~Ip~ 425 (810)
T 3now_A 350 ALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD----AECKEKLIEDKASIHA 425 (810)
T ss_dssp HHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS----HHHHHHHHHCHHHHHH
T ss_pred HHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC----cHHHHHHHHccchHHH
Confidence 9999999975432 1233345678888888888766 888999999999999875 3333333 3579999
Q ss_pred HHHHhhhccchhhhHHHHHHHHHHHHhccCCChHHHHHHHhhcCCCCCC--CcchhhhhhHHHHHHHHHHHhhcCCcchh
Q 001062 733 ALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQ--SGGVAKQAMYSIAQCVAVLCLAAGDQKCS 810 (1167)
Q Consensus 733 l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~ll~~L~~~~~~~~~--~~~~~~~a~~~~a~~i~~~~~~~~~~~~~ 810 (1167)
++.+++++. ....+..+..+.+++...... ..++.+.....-+.. +..-.........+-+..+.. .
T Consensus 426 LV~LL~s~d--~~i~~~al~~L~NLt~~~d~q--~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve-------a 494 (810)
T 3now_A 426 LMDLARGGN--QSCLYGVVTTFVNLCNAYEKQ--EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN-------E 494 (810)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHTTCSCCC--CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH-------T
T ss_pred HHHHhCCCC--hHHHHHHHHHHHHHcCCchhh--hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH-------C
Confidence 999998653 233455566666776532110 001111110000000 000001111111101111211 1
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCC-C--ccchHHHHHHhcCCChhhHHHHHHHHHHhhhhc-Ccc-
Q 001062 811 STVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLS-S--HEHIENVIIESFQSPFEEIKSAASYALGNIAVG-NLS- 885 (1167)
Q Consensus 811 ~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~-~--~~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~-~~~- 885 (1167)
+.++.|+..+.+ .++..+-.+..+|+.+....+.. . -...++.++.++.+.++.+|..|+.||++++.+ ++.
T Consensus 495 GaVp~LV~LL~s---~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 495 GITTALCALAKT---ESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp THHHHHHHHHTC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred cCHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 467788877765 35677888888888886442111 0 124688899999998899999999999998864 332
Q ss_pred --------cchHHHHHHhhcccc--hhHHHHHHHHHHHhhccccchhhhhHHH-HHHHHHHHhhccCCccchhhHHHHHh
Q 001062 886 --------KFLPFILDQIDNQQK--KQYLLLHSLKEVIVRQSVDKAEFQDSSV-EKILNLLFNHCESEEEGVRNVVAECL 954 (1167)
Q Consensus 886 --------~~lp~l~~~l~~~~~--~~~~~l~aLkei~~~~~~~~~~~l~~~~-~~i~~~L~~~~~~~~e~vr~~aa~~L 954 (1167)
..+|.+++.+.++.. .++-++.||..+...... .-...+ ...|+.|.....++.+.+|..|+++|
T Consensus 572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~----~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L 647 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES----VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH----HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 257888888875432 345678888877654311 001111 13455555555556688999999999
Q ss_pred hhccccC--------cccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhh--HhHHHHHhhccCCChHHHHH
Q 001062 955 GKIALIE--------PAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIF--PEISSFLMLIKDQDRHVRRA 1024 (1167)
Q Consensus 955 g~l~~~~--------~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~--~~i~~~l~~l~d~d~~vr~~ 1024 (1167)
++++... ....+|.|..++.+.+..+|..+..++..+...........+. ..++.++..|.++|.++|..
T Consensus 648 ~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~ 727 (810)
T 3now_A 648 CNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHR 727 (810)
T ss_dssp HHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHH
T ss_pred HHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHH
Confidence 9998742 1356788989998888899988899998776633222233332 57888899999999999999
Q ss_pred HHHHHHHHHhcCchhhhchh--hhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhhc
Q 001062 1025 AVLALSTFAHNKPNLIKGLL--PELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSC 1095 (1167)
Q Consensus 1025 a~~~L~~~a~~~p~~~~~~l--~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~~ 1095 (1167)
|..+|..++...++.. .++ ...+|.|.+-+... .++.-+++..|++++..+++-.
T Consensus 728 A~~aL~NL~~~s~e~~-~~l~e~G~i~~L~~LL~~~---------------d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 728 GIVIILNMINAGEEIA-KKLFETDIMELLSGLGQLP---------------DDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHHHHHTTCHHHH-HHHHTSTHHHHHTTSCCCT---------------TSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHH-HHHHHCCCHHHHHHHHhCc---------------ccCcHHHHHHHHHHHHHHHhCC
Confidence 9999999987655432 222 13666666554321 1246689999999999998875
No 27
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.67 E-value=2.5e-12 Score=156.82 Aligned_cols=647 Identities=11% Similarity=0.052 Sum_probs=415.6
Q ss_pred cCCChhHHhHhHHHHHHHhcccccCCChHHHHHH-----HHHHHHhcCC-CChhHHHHHHHHHHHhhhhcChhh---HHH
Q 001062 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKL-----SNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSEPR---VVE 84 (1167)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i-----~~~ll~~L~d-~~~~Vr~~A~~~l~~l~~~~~~~~---~~~ 84 (1167)
.+.|.|-|.-|+|.|.-.-.. +.-.+.| +..+.+.+++ .|+++.-+|++.|+.+...-.... +..
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re------~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~ 91 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKE------QTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTE 91 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSC------HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCHHHHHHHHhhceeeecc------ccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 567889999999999854432 1122222 5567777777 889999999999999986433221 222
Q ss_pred H-HHHHHHHhcCCCcchhcHHHHHHHHHHhhcCC---------c-hh---HHHHHHHHHHHHHHhhhccCCChhHHHHHH
Q 001062 85 M-TDKLCIKLLNGKDQHRDIASIALKTIIAEVTT---------S-SL---AQSIHTSLTPQLTKGITLKDMNTEIRCECL 150 (1167)
Q Consensus 85 l-~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~---------~-~~---~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~ 150 (1167)
+ +++++..+.+++++.-..++..+..++..+.. + .+ ...-++.++..|+..+.+..-+...|..++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~ 171 (810)
T 3now_A 92 LGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVI 171 (810)
T ss_dssp SCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHH
Confidence 2 67888888888888777888888887754321 1 11 234467777788888877655566788898
Q ss_pred HHHHHHHHHh----ccchh--HHHHHHHHHHhhhhcC--C-----hHHHHHHHHHHHHHHHhhcC----HHHHHHHHHHH
Q 001062 151 DILCDVLHKF----GNLMS--NDHERLLSALLPQLSA--N-----QASVRKKSVSCIASLASSLS----DDLLAKATIEV 213 (1167)
Q Consensus 151 ~~L~~l~~~~----g~~l~--~~~~~l~~~ll~~l~~--~-----~~~vrk~a~~~l~~l~~~~~----~~~~~~l~~~l 213 (1167)
++|..-+.+. +..+. .-...++...-+.-.. + ...+|-.+.-|++.+-.... .+.|...+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (810)
T 3now_A 172 ELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEY 251 (810)
T ss_dssp HHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 8887666332 11111 1222333332221110 1 23899999999999988776 23566666666
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhc-c-hhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccc
Q 001062 214 VRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGP-H-LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS 291 (1167)
Q Consensus 214 ~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p-~-l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~ 291 (1167)
++....... .+....++.++..++...++.-.. + -...+|.++..+.+ +++.+++.|.+++...+.. .+.+.
T Consensus 252 ~~~~~~~~~-~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s---~~~~~q~~A~~al~~aa~~--~~~R~ 325 (810)
T 3now_A 252 IKDKLLAPD-MESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT---DDELQQRVACECLIAASSK--KDKAK 325 (810)
T ss_dssp HHHHHSSCC-HHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS---SCHHHHHHHHHHHHHHTTS--HHHHH
T ss_pred HHHHhccCC-hHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC---CCHHHHHHHHHHHHHHcCC--cHHHH
Confidence 655443332 455667788888888765543111 1 24788999999988 7889999999999886543 23333
Q ss_pred cHH-HHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcC---C--hhhH
Q 001062 292 YCD-EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR---P--EMLS 365 (1167)
Q Consensus 292 ~l~-~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~---~--~~l~ 365 (1167)
++- .-++.+..+++. . ...+|..|+.+|..+.... + ..+.
T Consensus 326 ~I~~~gv~~L~~Ll~s-~---------------------------------~~~vr~~Al~~L~kl~s~~~~d~~~~~~~ 371 (810)
T 3now_A 326 ALCEQGVDILKRLYHS-K---------------------------------NDGIRVRALVGLCKLGSYGGQDAAIRPFG 371 (810)
T ss_dssp TTHHHHHHHHHHHTTC-S---------------------------------CHHHHHHHHHHHHHHHTTTTTTTSCCSST
T ss_pred HHHHcCcHHHHHHHcC-C---------------------------------CHHHHHHHHHHHHHhccccccCccccchh
Confidence 322 223666665541 0 0278989999998886421 1 1111
Q ss_pred -HHHHHHhhHHHhhhccC--ChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HHHHHHHHHHhccCCh
Q 001062 366 -KLYEEACPKLIDRFKER--EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINRQLREKSI 440 (1167)
Q Consensus 366 -~~~~~i~p~L~~~l~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~l~~~l~~~L~~~~~ 440 (1167)
.-...++|.+++.+.+. +..++..++.++..+..... .-.+.. +..++.+...+++.+.
T Consensus 372 ~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~----------------vk~~lv~d~g~Ip~LV~LL~s~d~ 435 (810)
T 3now_A 372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE----------------CKEKLIEDKASIHALMDLARGGNQ 435 (810)
T ss_dssp TTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH----------------HHHHHHHCHHHHHHHHHHHHTTCG
T ss_pred hccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH----------------HHHHHHHccchHHHHHHHhCCCCh
Confidence 12455667777666544 77899999999888753321 011111 4567777778877788
Q ss_pred hhHHHHHHHHHHHHHhcCch--------h----------------Hhhhh---------hhHHHHHHhcccCCCCchHHH
Q 001062 441 KTKVGAFSVLRELVVVLPDC--------L----------------ADHIG---------SLIPGIEKSLNDKSSTSNLKI 487 (1167)
Q Consensus 441 ~~r~~~~~~l~~l~~~~~~~--------l----------------~~~l~---------~l~~~l~~~l~d~~~~~~~~~ 487 (1167)
.+...++.+|..++...... + .++.. ..+|.+...+... +..++.
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~--s~~vqe 513 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE--SHNSQE 513 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC--CHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC--CHHHHH
Confidence 88889999999998633100 0 01111 4678888888754 568999
Q ss_pred HHHHHHHHHhccCCCCchhhhh--HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCcc-chHHHHHHH
Q 001062 488 EALTFTRLVLSSHSPPVFHPYI--KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKP-YVQPIYNAI 564 (1167)
Q Consensus 488 ~al~~l~~l~~~~~~~~~~~~l--~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~-~l~~l~~~l 564 (1167)
.+.++++.+... + .....+ .-.+|.++..+++.....+..|..+++.++....+. ..|.. .....+|.+
T Consensus 514 ~Aa~aL~NLA~d--~-~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~-----~~~~~~~~~~aIppL 585 (810)
T 3now_A 514 LIARVLNAVCGL--K-ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE-----VSFSGQRSLDVIRPL 585 (810)
T ss_dssp HHHHHHHHHHTS--H-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH-----HHTTTHHHHHTHHHH
T ss_pred HHHHHHHHHcCC--H-HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh-----hhhcchhhhcHHHHH
Confidence 999999999742 2 233322 236888889898888899999999999998653331 11111 123467777
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHhcCccccc-ch-hhhHHHHHHhh--cCchhhHHHHHHHHHHhcCCCCCchhhHH
Q 001062 565 MSRLTNQDQDQEVKECAISCMGLVISTFGDNLGA-EL-PACLPVLVDRM--GNEITRLTAVKAFAVIAASPLHIDLTCVL 640 (1167)
Q Consensus 565 l~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~-~~-~~~l~~L~~~L--~~e~~r~~a~~al~~i~~~~~~~~~~~~~ 640 (1167)
++.+. .+.+...+..|+.+++.++... +.... .+ ...+|.|.+.+ .++..+..|.+++++++.++ .....+.
T Consensus 586 v~LL~-~~~~~l~~~eAl~AL~NLa~~~-d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~--~~~~~~v 661 (810)
T 3now_A 586 LNLLQ-QDCTALENFESLMALTNLASMN-ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE--DVIKMFE 661 (810)
T ss_dssp HHTTS-TTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH--HHHHHHH
T ss_pred HHHhC-CCCcHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--HHHHHHH
Confidence 77775 3444455667999999987542 11111 11 23566666655 34568999999999998642 1123333
Q ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhH--HHHHHHHhhhcCCCchhhHHHHHHHHHHHhhccc
Q 001062 641 --EHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAY--EVIIVELSTLISDSDLHMTALALELCCTLMADKR 716 (1167)
Q Consensus 641 --~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~ 716 (1167)
...++.|..++...+..+|..|..+|+.|........ ...+ ...++.+..++.++|..++..+..++..++..
T Consensus 662 ~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~-~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-- 738 (810)
T 3now_A 662 GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC-EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-- 738 (810)
T ss_dssp SSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH-HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT--
T ss_pred hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH-HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC--
Confidence 2477888888888899999999999999987422100 0111 12455667778889999999999999999875
Q ss_pred CCCchh-hhhhhchHHHHHHHhhhc
Q 001062 717 SSPNVG-LAVRNKVLPQALALIKSS 740 (1167)
Q Consensus 717 ~~p~~~-~~~~~~~l~~l~~ll~~~ 740 (1167)
.++.. .......++.+..+++.+
T Consensus 739 -s~e~~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 739 -GEEIAKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp -CHHHHHHHHTSTHHHHHTTSCCCT
T ss_pred -CHHHHHHHHHCCCHHHHHHHHhCc
Confidence 22222 234567888888877543
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.66 E-value=6.8e-14 Score=175.72 Aligned_cols=507 Identities=12% Similarity=0.088 Sum_probs=322.4
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh---
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR--- 81 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~--- 81 (1167)
.+..+++++.+++.+.|..|+..+.. ..+ .......++.|++.|.++++.||..|+.+|+.++..-....
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~-~~~------~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~ 188 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINY-QDD------AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 188 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHh-hhH------HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 35788899999999999988887763 222 12336778889999999999999999999999986432211
Q ss_pred -HHHHHHHHHHHhcCC-CcchhcHHHHHHHHHHhhcCCchhHHHH-HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHH
Q 001062 82 -VVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLH 158 (1167)
Q Consensus 82 -~~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~~~~~~~~~~~~~~-~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~ 158 (1167)
....++.|+..+.++ +...|..++.+|+.+...- . ....+ -...+|.|+..|.++ ++.++..++.+|..++.
T Consensus 189 ~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~--~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-E--GLLAIFKSGGIPALVNMLGSP--VDSVLFHAITTLHNLLL 263 (780)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-H--HHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHH
T ss_pred hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-h--hHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhC
Confidence 135677777777644 6678889999999865431 1 11111 225788999988875 58899999999999987
Q ss_pred HhccchhHH-HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHH
Q 001062 159 KFGNLMSND-HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQM 233 (1167)
Q Consensus 159 ~~g~~l~~~-~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~ 233 (1167)
.....-... ....++.++..+.+++..++..++.++..++....+. +. ...++.++..+++.+. ...+..++.+
T Consensus 264 ~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~-~~~~~~a~~a 342 (780)
T 2z6g_A 264 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRV 342 (780)
T ss_dssp HSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred CChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH-HHHHHHHHHH
Confidence 754432222 2357788888898888899999999999887532221 11 1346677777776543 3455567778
Q ss_pred HHHHHHHhhhhhhcch--hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCC
Q 001062 234 VGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFT 311 (1167)
Q Consensus 234 l~~l~~~~~~~~~p~l--~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~ 311 (1167)
+..++.. +.. .+.+ ..++|.++..+.+ .+.++++.+++++..++...+.. .....+++.+.+.+..
T Consensus 343 L~~Ls~~-~~~-~~~i~~~g~l~~Ll~lL~~---~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~----- 410 (780)
T 2z6g_A 343 LKVLSVC-SSN-KPAIVEAGGMQALGLHLTD---PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS----- 410 (780)
T ss_dssp HHHHHTS-TTH-HHHHHHTTHHHHHGGGTTC---SCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTC-----
T ss_pred HHHhhcC-hHH-HHHHHHhchHHHHHHHHcC---CchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcC-----
Confidence 8887753 221 1211 3467888888877 67889999999999998776542 2235677777776641
Q ss_pred CCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHH-HHHhhHHHhhhccC--ChhHHH
Q 001062 312 DNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKER--EENVKM 388 (1167)
Q Consensus 312 ~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~-~~i~p~L~~~l~d~--~~~vr~ 388 (1167)
.+|++|+.|+.+|+.+....++....+. ...+|.|++.+.+. .+.||.
T Consensus 411 -----------------------------~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~ 461 (780)
T 2z6g_A 411 -----------------------------DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 461 (780)
T ss_dssp -----------------------------SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------------------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHH
Confidence 2379999999999998765443222222 23567777777542 248999
Q ss_pred HHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HHHHHHHHHHhccCC-hhhHHHHHHHHHHHHHhcCchhHhhh
Q 001062 389 DVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSINRQLREKS-IKTKVGAFSVLRELVVVLPDCLADHI 465 (1167)
Q Consensus 389 ~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~l~~~l~~~L~~~~-~~~r~~~~~~l~~l~~~~~~~l~~~l 465 (1167)
.++.+++.+..... .....+..+ ...++.+.+.|.+.+ +.+|..++.+|+.++.. +.......
T Consensus 462 ~Al~aL~nL~~~~~-------------~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~ 527 (780)
T 2z6g_A 462 PAICALRHLTSRHQ-------------DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLR 527 (780)
T ss_dssp HHHHHHHHTTSSST-------------THHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHH
T ss_pred HHHHHHHHHHhcCc-------------hHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 98888887642111 000011111 223566677777665 48899999999988742 11111111
Q ss_pred -hhhHHHHHHhcccCC--------------------CCchHHHHHHHHHHHHhccCCCCchhhhh--HhhHHHHHHHhcC
Q 001062 466 -GSLIPGIEKSLNDKS--------------------STSNLKIEALTFTRLVLSSHSPPVFHPYI--KALSSPVLAAVGE 522 (1167)
Q Consensus 466 -~~l~~~l~~~l~d~~--------------------~~~~~~~~al~~l~~l~~~~~~~~~~~~l--~~ll~~l~~~l~d 522 (1167)
..++|.+.+.|.+.. ....++..++.+|+.+... + .....+ ...+|.++..+.+
T Consensus 528 ~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~-~~~~~l~~~~~i~~Lv~lL~~ 604 (780)
T 2z6g_A 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--I-HNRIVIRGLNTIPLFVQLLYS 604 (780)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--H-HHHHHHHHTCCHHHHHHGGGC
T ss_pred HCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--h-hhHHHHHHCCcHHHHHHHHcC
Confidence 234556665554321 1123566677777777532 1 111112 3468899999999
Q ss_pred CchHHHHHHHHHHHHHHHhccCCccccCCCCccchHH--HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcC
Q 001062 523 RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP--IYNAIMSRLTNQDQDQEVKECAISCMGLVISTFG 593 (1167)
Q Consensus 523 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~--l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g 593 (1167)
.+.+++..|..++..+... + .....+.. .++.+...+. +.+.+||..|..+++.+....+
T Consensus 605 ~~~~v~~~a~~aL~~L~~~--~-------~~~~~i~~~g~i~~L~~Ll~--~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 605 PIENIQRVAAGVLCELAQD--K-------EAAEAIEAEGATAPLTELLH--SRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTS--H-------HHHHHHHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHhcC--H-------HHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999999888632 1 11122222 3445555554 5678999999999999886543
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.65 E-value=2.8e-14 Score=172.52 Aligned_cols=398 Identities=11% Similarity=0.090 Sum_probs=281.0
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhH-----HHHHHHHHHHhcCC-CcchhcHHHHHHHHHHhhcCCc
Q 001062 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV-----VEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTS 118 (1167)
Q Consensus 45 ~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~-----~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~~~~~~~~ 118 (1167)
...++.+++.|.++++++|..|+.+|..+...-....+ ..+++.|...+.++ ++.+|..++.+|..++...+.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~- 164 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA- 164 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-
Confidence 34588899999999999999999999998765322222 24578888888776 677899999999988765432
Q ss_pred hhHHHH-HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHH
Q 001062 119 SLAQSI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIAS 196 (1167)
Q Consensus 119 ~~~~~~-~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~ 196 (1167)
....+ -..++|.|+..|.++ ++.+|..++.+|+.++......-. -.....++.++..+.++++.+|+.|+.+|+.
T Consensus 165 -~~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 165 -QTKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 11222 235688888888865 689999999999999854221110 0112467778888888888999999999999
Q ss_pred HHhhc----CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchh-hhHHHHHHHhhhcCCCChhHH
Q 001062 197 LASSL----SDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG-DTVPVLIDYCTSASENDEELR 271 (1167)
Q Consensus 197 l~~~~----~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~-~lvp~l~~~l~~~~e~~~e~r 271 (1167)
++... .......+++.++..+.+++ ...+..++.+++.++...+......+. .++|.++..+.+ .++++|
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~---~~~~v~ 316 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMD--TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH---ESTLVQ 316 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC---CChhhH
Confidence 99653 33345677888888887654 578999999999999765544443333 688999999987 788999
Q ss_pred HHHHHHHHHHHHhCCccccccH-HHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHH
Q 001062 272 EYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAA 350 (1167)
Q Consensus 272 e~al~~l~~l~~~~~~~~~~~l-~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~ 350 (1167)
..|++++..++...+.....++ ..+++.+..++.. ..|.+|+.|+
T Consensus 317 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----------------------------------~~~~vr~~A~ 362 (530)
T 1wa5_B 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS----------------------------------PKENIKKEAC 362 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----------------------------------SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC----------------------------------CCHHHHHHHH
Confidence 9999999999865543322222 2456666666641 1379999999
Q ss_pred HHHHHHHhcCChhhHHHH-HHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH-HHHH
Q 001062 351 KCLAALIVSRPEMLSKLY-EEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIV 428 (1167)
Q Consensus 351 ~~l~~li~~~~~~l~~~~-~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~-~~l~ 428 (1167)
.+|+.+....++....++ ..++|.|++.+++.++.||..+..+++.+.....+. | ......+ ..++
T Consensus 363 ~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-----------~-~~~~~l~~~~~l 430 (530)
T 1wa5_B 363 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR-----------P-DIIRYLVSQGCI 430 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC-----------T-HHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc-----------H-HHHHHHHHCCCH
Confidence 999999876655444444 357788888888888999999999999887653210 0 0111111 2366
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHhcCch-------hHhhhhh-----hHHHHHHhcccCCCCchHHHHHHHHHHHH
Q 001062 429 KSINRQLREKSIKTKVGAFSVLRELVVVLPDC-------LADHIGS-----LIPGIEKSLNDKSSTSNLKIEALTFTRLV 496 (1167)
Q Consensus 429 ~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~-------l~~~l~~-----l~~~l~~~l~d~~~~~~~~~~al~~l~~l 496 (1167)
+.+...+.++++.++..++.+|..++...+.. ..++... .++.+...+.+. +..++..+..++..+
T Consensus 431 ~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~--~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 431 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE--NDKIYEKAYKIIETY 508 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 77788888888999999999999988754321 1222222 255666655554 456888888888887
Q ss_pred hcc
Q 001062 497 LSS 499 (1167)
Q Consensus 497 ~~~ 499 (1167)
+..
T Consensus 509 ~~~ 511 (530)
T 1wa5_B 509 FGE 511 (530)
T ss_dssp SSS
T ss_pred CCc
Confidence 754
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.65 E-value=1.5e-14 Score=174.92 Aligned_cols=400 Identities=14% Similarity=0.117 Sum_probs=278.3
Q ss_pred HHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 001062 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1167)
Q Consensus 84 ~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~ 163 (1167)
..++.|++.+.+++...|..|+.+|+.++..-+......-+-..++|.|+..|.+++ ++.++..++.+|+.++......
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHH
Confidence 346677777777777888899999998876532211212223467899999998753 5889999999999887632221
Q ss_pred hhH-HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 001062 164 MSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238 (1167)
Q Consensus 164 l~~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~ 238 (1167)
... .....++.++..+.++++.+|..|+.+|+.++...+.. .+ ...++.++..+.+. +...++.++.+++.++
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHh
Confidence 111 11345777888888888899999999999999753221 11 24678888888774 3578999999999999
Q ss_pred HHh-hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHH-HHHHHHHHhhccCCCCCCCCCC
Q 001062 239 RAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNFTDNMEE 316 (1167)
Q Consensus 239 ~~~-~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~-~ii~~~~~~l~~dp~~~~~~~~ 316 (1167)
+.. +..-......++|.++..+.+ +++++|..+++++..++...+......+. .+++.+..++.
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~---~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~----------- 309 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYS---MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS----------- 309 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTC---CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-----------
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC-----------
Confidence 764 332233557889999999987 78899999999999998765443333332 45566666654
Q ss_pred CCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHH-HHHhhHHHhhhccCChhHHHHHHHHHH
Q 001062 317 DSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKEREENVKMDVFNTFI 395 (1167)
Q Consensus 317 d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~-~~i~p~L~~~l~d~~~~vr~~~~~~l~ 395 (1167)
+.+|.+|..|+.+|+.+....++....++ ..++|.|+..+++.++.+|..++.+++
T Consensus 310 -----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 310 -----------------------HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp -----------------------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -----------------------CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12479999999999999876554333333 357788888888888999999999988
Q ss_pred HHHHhhCCCCCCccCCCCCchHHHHHHHH-HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCc--hhHhhh--hhhHH
Q 001062 396 ELVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD--CLADHI--GSLIP 470 (1167)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~p~~~l~~~~-~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~--~l~~~l--~~l~~ 470 (1167)
.+.... + ...+..+ ..+++.+...|.+.++.+|..++.+|+.++..... ....++ ..++|
T Consensus 367 ~l~~~~--------------~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~ 431 (530)
T 1wa5_B 367 NITAGN--------------T-EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK 431 (530)
T ss_dssp HHTTSC--------------H-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHH
T ss_pred HHHcCC--------------H-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHH
Confidence 875421 1 1222222 23556667777778889999999999999876433 222333 24889
Q ss_pred HHHHhcccCCCCchHHHHHHHHHHHHhccCCC------CchhhhhHh-----hHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001062 471 GIEKSLNDKSSTSNLKIEALTFTRLVLSSHSP------PVFHPYIKA-----LSSPVLAAVGERYYKVTAEALRVCGELV 539 (1167)
Q Consensus 471 ~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~------~~~~~~l~~-----ll~~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1167)
.+...+.+. +..++..++.++..++..... ....+|... .++.+....++.+..++..|..++..++
T Consensus 432 ~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 432 PLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 999999876 568899999999988764211 012233333 3556666667788889888888888776
Q ss_pred H
Q 001062 540 R 540 (1167)
Q Consensus 540 ~ 540 (1167)
.
T Consensus 510 ~ 510 (530)
T 1wa5_B 510 G 510 (530)
T ss_dssp S
T ss_pred C
Confidence 4
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.64 E-value=3e-14 Score=172.35 Aligned_cols=404 Identities=13% Similarity=0.129 Sum_probs=282.5
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccc-cCCChHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHhhhhcChhh-
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKES-FKADADLEVKLSNIVVQQLDDVA-GDVSGLAVKCLAPLVKKVSEPR- 81 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~-~~~~~~~~~~i~~~ll~~L~d~~-~~Vr~~A~~~l~~l~~~~~~~~- 81 (1167)
.+..+++.+.+.|+++|..|+..|.+.+.... ...+.-....+++.|++.|.+++ +++|..|+.+|+.++..-.+..
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 37789999999999999999999999887543 11122233467899999999887 9999999999999986432211
Q ss_pred -H--HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 001062 82 -V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVL 157 (1167)
Q Consensus 82 -~--~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~-~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~ 157 (1167)
+ ...++.|+..+.+++..+|..++.+|..++...+. ....+. ..++|.|+..|.+. .++.++..++.+|+.++
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~--~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK--CRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH--HHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh--hHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 1 13688888888888888999999999999865432 122222 24688888888433 26899999999999998
Q ss_pred HHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHH
Q 001062 158 HKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQM 233 (1167)
Q Consensus 158 ~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~ 233 (1167)
......-.......++.+.+.+.++++.++..|+.+|+.++...++. .+ ..+++.++..+.+++ ...+..++.+
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--~~v~~~a~~~ 309 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS--PSVLIPALRT 309 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC--HHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC--hhHHHHHHHH
Confidence 76433222445678888888898889999999999999999664432 11 136788888888764 4789999999
Q ss_pred HHHHHHHhhhhhhcch-hhhHHHHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhCCccccccHH-HHHHHHHHhhccCCCC
Q 001062 234 VGALSRAVGYRFGPHL-GDTVPVLIDYCTSASEN-DEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNF 310 (1167)
Q Consensus 234 l~~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~-~~e~re~al~~l~~l~~~~~~~~~~~l~-~ii~~~~~~l~~dp~~ 310 (1167)
++.++...+......+ ..++|.+...+.+ . ++.+|..|.+++..++...+..+...+. .+++.+..++..
T Consensus 310 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~---- 382 (528)
T 4b8j_A 310 VGNIVTGDDAQTQCIIDHQALPCLLSLLTQ---NLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT---- 382 (528)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHHHcCCHHHHHHHHHhhhHHHHHHHHcC---CCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc----
Confidence 9999875544332222 4578999998887 6 8899999999999998754433322221 445555555531
Q ss_pred CCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhc-CChhhHHHH-HHHhhHHHhhhccCChhHHH
Q 001062 311 TDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS-RPEMLSKLY-EEACPKLIDRFKEREENVKM 388 (1167)
Q Consensus 311 ~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~-~~~~l~~~~-~~i~p~L~~~l~d~~~~vr~ 388 (1167)
..+++|+.|+.+|+.+... .++....+. ..+++.|++.+.+.++.++.
T Consensus 383 ------------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~ 432 (528)
T 4b8j_A 383 ------------------------------AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVT 432 (528)
T ss_dssp ------------------------------SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 0248999999999999876 344333332 34678888888888999999
Q ss_pred HHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHH--HHHHHHHHHhccCChhhHHHHHHHHHHHHH
Q 001062 389 DVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVS--KIVKSINRQLREKSIKTKVGAFSVLRELVV 455 (1167)
Q Consensus 389 ~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~--~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~ 455 (1167)
.++.++..+++......+.... .. ..+...+. ..++.+.....+.+..++..+..++..++.
T Consensus 433 ~al~~L~~l~~~~~~~~~~~~~--~~---~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 433 VCLEGLENILKVGETDKTLAAG--DV---NVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--SC---CHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhhcccc--cc---cHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999988754210000000 00 01111111 124556666667777888888877766643
No 32
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.64 E-value=4.3e-12 Score=160.50 Aligned_cols=666 Identities=10% Similarity=0.081 Sum_probs=394.2
Q ss_pred CCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcC----C-----CChhHHHHHHHHHHHhhhhcChhhHHHH
Q 001062 15 GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD----D-----VAGDVSGLAVKCLAPLVKKVSEPRVVEM 85 (1167)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~----d-----~~~~Vr~~A~~~l~~l~~~~~~~~~~~l 85 (1167)
+.++.+||.|+.-|.+.+++.|..++++....+.+.++..+. + +++.+++....+++.++.+.-++.|+.+
T Consensus 72 s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~f 151 (1073)
T 3gjx_A 72 SQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTF 151 (1073)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTH
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHH
Confidence 457899999999999999999888888777777777776653 3 2467889999999999988666779999
Q ss_pred HHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc--------------hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHH
Q 001062 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS--------------SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLD 151 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~--------------~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~ 151 (1167)
++.|++....+ +...+....-|+.+.+++... +........+++.+...|+... ++.+...+++
T Consensus 152 i~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~-~~~lv~~~L~ 229 (1073)
T 3gjx_A 152 ISDIVGASRTS-ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQ-NAPLVHATLE 229 (1073)
T ss_dssp HHHHHHHHHHC-HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHH
Confidence 99999877532 344667777788887774320 0111112334444444454433 5677788888
Q ss_pred HHHHHHHHhccchhHHHHHHHHHH-hhhhcCChHHHHHHHHHHHHHHHhhcCH---HH----HHHHHHHHHHHhh-----
Q 001062 152 ILCDVLHKFGNLMSNDHERLLSAL-LPQLSANQASVRKKSVSCIASLASSLSD---DL----LAKATIEVVRNLR----- 218 (1167)
Q Consensus 152 ~L~~l~~~~g~~l~~~~~~l~~~l-l~~l~~~~~~vrk~a~~~l~~l~~~~~~---~~----~~~l~~~l~~~l~----- 218 (1167)
+++.++......+- ..+.+++.+ ...+. .+.+|..|+.||..++..-.+ +. |..++..+...+.
T Consensus 230 ~L~~~~sWI~i~~i-~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l 306 (1073)
T 3gjx_A 230 TLLRFLNWIPLGYI-FETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNI 306 (1073)
T ss_dssp HHHHHTTTSCTHHH-HSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCH
T ss_pred HHHHHHHhcCHHHh-ccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 88888776543221 113466666 45553 457999999999999864221 22 3333333322111
Q ss_pred -----cC-CCChHHHHHHHHHHHHHHHHhhh------hhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC-
Q 001062 219 -----SK-GAKPEMIRTNIQMVGALSRAVGY------RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC- 285 (1167)
Q Consensus 219 -----~~-~~~~~~r~~~~~~l~~l~~~~~~------~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~- 285 (1167)
.. .++.+..+....++..+++.-.. .+.+++-..+.+++.+... +|.|+-+.|+..+..+....
T Consensus 307 ~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~---~d~ei~kitf~fW~~L~~~L~ 383 (1073)
T 3gjx_A 307 RLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEV---EETEIFKICLEYWNHLAAELY 383 (1073)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHHHHHHH
Confidence 11 11112223333444444433111 2444555566666776666 78899999999888776532
Q ss_pred ---C---------------------ccccccHHHHHHHHHHhhccCCCCCCCCCCCCccc-ccccccch-----------
Q 001062 286 ---P---------------------RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDE-AYEEEEED----------- 329 (1167)
Q Consensus 286 ---~---------------------~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~-~~~~~~d~----------- 329 (1167)
| ..++|++.++..++..-|.|.+..-..++|++|-- +.-.|.|+
T Consensus 384 ~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L 463 (1073)
T 3gjx_A 384 RESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL 463 (1073)
T ss_dssp HHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHH
Confidence 1 01557788888888888877554211111111100 00000000
Q ss_pred -h-----hcCC-------C---CCCCCcchHHHHHHHHHHHHHHhcCCh-hhHHHHHHHhhHHHhhhccC---C--hhHH
Q 001062 330 -E-----SANE-------Y---TDDEDASWKVRRAAAKCLAALIVSRPE-MLSKLYEEACPKLIDRFKER---E--ENVK 387 (1167)
Q Consensus 330 -~-----~~~~-------~---~dddd~sw~vR~aA~~~l~~li~~~~~-~l~~~~~~i~p~L~~~l~d~---~--~~vr 387 (1167)
. .++- . -+.+..+|..+.+++-++|++..+..+ .-..++..+++.|+...... + ..++
T Consensus 464 ~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~va 543 (1073)
T 3gjx_A 464 VYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIA 543 (1073)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHH
Confidence 0 0000 0 022356899999999999999876653 34467888888877544211 1 2233
Q ss_pred HHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchh------
Q 001062 388 MDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCL------ 461 (1167)
Q Consensus 388 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l------ 461 (1167)
..+..+++..-+-.. .=.+++++++..+.+.+.++++.++.+|+.+|..+++.++..+
T Consensus 544 s~i~~vlgrY~~wl~----------------~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~ 607 (1073)
T 3gjx_A 544 SNIMYIVGQYPRFLR----------------AHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVG 607 (1073)
T ss_dssp HHHHHHHHHCHHHHH----------------HCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTT
T ss_pred HHHHHHHhhhHHHHH----------------hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 333334444322221 0135778888999999998889999999999999999887765
Q ss_pred --HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCc-hhhhhHhhHHHHHHHhcC------------Cch-
Q 001062 462 --ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPV-FHPYIKALSSPVLAAVGE------------RYY- 525 (1167)
Q Consensus 462 --~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~-~~~~l~~ll~~l~~~l~d------------~~~- 525 (1167)
.+|+.+++..+..+..+- ...-...-+..++.++...+++. ...++..+++.....++. .++
T Consensus 608 e~~p~i~~il~~~~~~~~~l--~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~ 685 (1073)
T 3gjx_A 608 EVMPFIDEILNNINTIICDL--QPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPE 685 (1073)
T ss_dssp CSSCHHHHHHTSHHHHHTTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred ccchHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChH
Confidence 347777777776665543 23344555667888888776544 344777777766655421 012
Q ss_pred --HHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhc------------C---CCCHH------HHHHHH
Q 001062 526 --KVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN------------Q---DQDQE------VKECAI 582 (1167)
Q Consensus 526 --~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~------------~---d~~~~------vr~~Ai 582 (1167)
+.....+++....+..+|+ .|.|++..+++.+++.-+. . ...+. +|..-+
T Consensus 686 ~i~~l~~il~~n~~v~~~~g~-------~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil 758 (1073)
T 3gjx_A 686 TVKQLGSILKTNVRACKAVGH-------PFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETL 758 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHhhcch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHH
Confidence 3344555555566666654 5788888888866644221 0 01122 222223
Q ss_pred HHHHHHHHhcCcc---cccchhhhHHHHHHhh--cCchhhHH-HHHHHHHHhcCCCCCchhhHHHHHHHHH----HHHHH
Q 001062 583 SCMGLVISTFGDN---LGAELPACLPVLVDRM--GNEITRLT-AVKAFAVIAASPLHIDLTCVLEHVIAEL----TAFLR 652 (1167)
Q Consensus 583 ~alg~l~~~~g~~---l~~~~~~~l~~L~~~L--~~e~~r~~-a~~al~~i~~~~~~~~~~~~~~~~l~~L----~~~L~ 652 (1167)
..+..++....+. ....++.++..++.-- .....|.. .+..+..++... +..+.+.++.++..+ .+.+.
T Consensus 759 ~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~-~~~~~~~~~~il~~vf~~Tl~mi~ 837 (1073)
T 3gjx_A 759 KLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKL-GGHITAEIPQIFDAVFECTLNMIN 837 (1073)
T ss_dssp HHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHH-GGGTGGGHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHHh
Confidence 3444444332210 1122333343333211 22234543 455555555321 223345555555444 44554
Q ss_pred ---HhhHHHHHHHHHHHHHHHHHhCCC---CChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhc
Q 001062 653 ---KANRALRQATLGTMNSLVVAYGDK---IGASAYEVIIVELSTLISDSDLHMTALALELCCTLMAD 714 (1167)
Q Consensus 653 ---~~~~~lr~~al~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~ 714 (1167)
.+.+..|..=++.+..+..++... ++...+..++..+.=.+..+.+.+....+.++..+..+
T Consensus 838 ~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~ 905 (1073)
T 3gjx_A 838 KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 905 (1073)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence 356889999999999998886653 45666777888877777778888888888877777654
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.61 E-value=1.3e-12 Score=159.62 Aligned_cols=478 Identities=13% Similarity=0.094 Sum_probs=298.8
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
....++.-+.+.|...|.|+--.+...+.. +++...-++..+.+-|.|+|+.||..|+++|+.+. .++..+.
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-----~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~ 142 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDE-----RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRD 142 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHH
Confidence 344555566677766666655555544432 34555678899999999999999999999999987 3455677
Q ss_pred HHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccch
Q 001062 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1167)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l 164 (1167)
+++.+...+.+.++.+|..|+.|+..++...|. .+..+++.+...+.++ ++.|+..|+.+|.++....+..
T Consensus 143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~------~v~~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~~~~~- 213 (618)
T 1w63_A 143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE------LMEMFLPATKNLLNEK--NHGVLHTSVVLLTEMCERSPDM- 213 (618)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG------GGGGGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCSHHHH-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH------HHHHHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHhChHH-
Confidence 788888888899899999999999999986654 2235667777777764 5899999999999987553321
Q ss_pred hHHHHHHHHHHhhhhc---------------CChHHHHHHHHHHHHHHHhhcCHH--HHHHHHHHHHHHhhcCC-CChHH
Q 001062 165 SNDHERLLSALLPQLS---------------ANQASVRKKSVSCIASLASSLSDD--LLAKATIEVVRNLRSKG-AKPEM 226 (1167)
Q Consensus 165 ~~~~~~l~~~ll~~l~---------------~~~~~vrk~a~~~l~~l~~~~~~~--~~~~l~~~l~~~l~~~~-~~~~~ 226 (1167)
...+..+++.++..|. .+++-.+...+.+++.++..-++. .+.+++..++....... .+..+
T Consensus 214 ~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 214 LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 1122233333333332 135667777889999888754331 12334444433221111 11123
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhcc
Q 001062 227 IRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSY 306 (1167)
Q Consensus 227 r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~ 306 (1167)
.-.++.++..+ .+. .......++.+..++.+ .++++|..++.++..++...|..+.+|.+.++..+ +
T Consensus 294 ~~ea~~~i~~l---~~~--~~l~~~a~~~L~~~L~~---~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l-----~ 360 (618)
T 1w63_A 294 LYETVLTIMDI---KSE--SGLRVLAINILGRFLLN---NDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCL-----K 360 (618)
T ss_dssp HHHHHHHHHHS---CCC--HHHHHHHHHHHHHHHTC---SSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGG-----G
T ss_pred HHHHHHHHHhc---CCC--HHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHc-----c
Confidence 33333333332 110 01123456677777776 78899999999999999988877778777666543 1
Q ss_pred CCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhH
Q 001062 307 DPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENV 386 (1167)
Q Consensus 307 dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~v 386 (1167)
|+ ...||+.|..++..+..... + +.+++.+++.+.+.+..+
T Consensus 361 d~---------------------------------d~~Ir~~alelL~~l~~~~n--v----~~iv~eL~~~l~~~d~e~ 401 (618)
T 1w63_A 361 DL---------------------------------DVSIKRRAMELSFALVNGNN--I----RGMMKELLYFLDSCEPEF 401 (618)
T ss_dssp SS---------------------------------CHHHHHHHHHHHHHHCCSSS--T----HHHHHHHHHHHHHCCHHH
T ss_pred CC---------------------------------ChhHHHHHHHHHHHHccccc--H----HHHHHHHHHHHHhCCHHH
Confidence 11 12799999999988876432 2 334455555666778899
Q ss_pred HHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhh
Q 001062 387 KMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIG 466 (1167)
Q Consensus 387 r~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~ 466 (1167)
|..++.+++.+.....+ ....+++.++ +.++.....++..++..+..++...|+.-..
T Consensus 402 r~~~v~~I~~la~k~~~---------------~~~~~v~~ll----~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~--- 459 (618)
T 1w63_A 402 KADCASGIFLAAEKYAP---------------SKRWHIDTIM----RVLTTAGSYVRDDAVPNLIQLITNSVEMHAY--- 459 (618)
T ss_dssp HHHHHHHHHHHHHSSCC---------------CHHHHHHHHH----HHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH---
T ss_pred HHHHHHHHHHHHHHhCc---------------cHHHHHHHHH----HHHHhccchhHHHHHHHHHHHHhcChhHHHH---
Confidence 99999999998765431 2344555554 4444444456666777788888777754322
Q ss_pred hhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCC--------CchhhhhHhhHHHHHHHhc--CCchHHHHHHHHHHH
Q 001062 467 SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSP--------PVFHPYIKALSSPVLAAVG--ERYYKVTAEALRVCG 536 (1167)
Q Consensus 467 ~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~--------~~~~~~l~~ll~~l~~~l~--d~~~~v~~~al~~l~ 536 (1167)
.++.+...+.+......+...+++++|.+...... ....| ..+++.+...++ ..+..++..++.++.
T Consensus 460 -~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~vr~~~lta~~ 536 (618)
T 1w63_A 460 -TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTE--DEVLDILESVLISNMSTSVTRGYALTAIM 536 (618)
T ss_dssp -HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCH--HHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCH--HHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33444444443211234444678888887642210 01111 223333334333 456789999999998
Q ss_pred HHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 001062 537 ELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVI 589 (1167)
Q Consensus 537 ~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~ 589 (1167)
.+..... .. ...+..+++... ++.|.+||++|...+.-+.
T Consensus 537 Kl~~~~~--------~~----~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 537 KLSTRFT--------CT----VNRIKKVVSIYG-SSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHTTCS--------SC----HHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCc--------ch----HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHc
Confidence 8875431 12 233334445553 5788999999988776653
No 34
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.61 E-value=1.2e-11 Score=161.59 Aligned_cols=531 Identities=9% Similarity=0.067 Sum_probs=320.3
Q ss_pred hHHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhh----hcC
Q 001062 3 NLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK----KVS 78 (1167)
Q Consensus 3 ~~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~----~~~ 78 (1167)
-..+..+++.+.+||.+.|..|-.-|.+.=+.+ ..... +..++.. +++..||..|...|...++ .++
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p------~~~~~-l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~ 85 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP------DAWQK-ADQILQF--STNPQSKFIALSILDKLITRKWKLLP 85 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHST------TGGGG-HHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCc------hHHHH-HHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCC
Confidence 346778888999999999999988886542221 11122 2222222 6788999999999998774 355
Q ss_pred hhhHHHHHHHHHHHhcCC---------CcchhcHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHhhhccCCChhHHHH
Q 001062 79 EPRVVEMTDKLCIKLLNG---------KDQHRDIASIALKTIIAE-VTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCE 148 (1167)
Q Consensus 79 ~~~~~~l~~~L~~~~~~~---------~~~~r~~a~~aL~~~~~~-~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~ 148 (1167)
++....+-..|+..+.+. +..+|...+.++..++.. .|. .+. .+++.|++.++. ++..++.
T Consensus 86 ~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~--~Wp----~ll~~L~~~~~~---~~~~~~~ 156 (1049)
T 3m1i_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ--NWP----EFIPELIGSSSS---SVNVCEN 156 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT--TCT----THHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc--cch----HHHHHHHHHHcc---ChHHHHH
Confidence 555556656666655431 134566666667766554 332 122 345555555542 3556667
Q ss_pred HHHHHHHHHHHhc----------------cchhHHHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCHHH-H-HHH
Q 001062 149 CLDILCDVLHKFG----------------NLMSNDHERLLSALLPQLSAN-QASVRKKSVSCIASLASSLSDDL-L-AKA 209 (1167)
Q Consensus 149 ~~~~L~~l~~~~g----------------~~l~~~~~~l~~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~~-~-~~l 209 (1167)
++.+|..+.+... ..+..+.+.+++.+...+.+. +..+++.++.|+..+....+... + +.+
T Consensus 157 ~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~l 236 (1049)
T 3m1i_C 157 NMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNI 236 (1049)
T ss_dssp HHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSH
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhH
Confidence 7777776665433 223455666777777777543 45899999999998887766443 2 235
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh-hh---hhhcchhhhHHHHHHHhh---------------hcCCCChhH
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV-GY---RFGPHLGDTVPVLIDYCT---------------SASENDEEL 270 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~-~~---~~~p~l~~lvp~l~~~l~---------------~~~e~~~e~ 270 (1167)
++.+...+.. +.+.|..++.++..++... +. ++..++..+++.+++.+. ..+++|++.
T Consensus 237 l~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~ 313 (1049)
T 3m1i_C 237 LELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSF 313 (1049)
T ss_dssp HHHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHH
T ss_pred HHHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHH
Confidence 5555533322 2478889999999888651 11 122233333333333221 112244554
Q ss_pred HHHHHHHHHHHHHhC------CccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchH
Q 001062 271 REYSLQALESFLLRC------PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWK 344 (1167)
Q Consensus 271 re~al~~l~~l~~~~------~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~ 344 (1167)
.......+..+.... +.++.+++..+++.+++...++ ...
T Consensus 314 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~----------------------------------d~~ 359 (1049)
T 3m1i_C 314 LQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE----------------------------------ERE 359 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS----------------------------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC----------------------------------cHH
Confidence 444444444433221 2235677777888887765421 015
Q ss_pred HHHHHHHHHHHHHh------cCChhhHHHHHHHhhHHHhhhccCCh----------------------hHHHHHHHHHHH
Q 001062 345 VRRAAAKCLAALIV------SRPEMLSKLYEEACPKLIDRFKEREE----------------------NVKMDVFNTFIE 396 (1167)
Q Consensus 345 vR~aA~~~l~~li~------~~~~~l~~~~~~i~p~L~~~l~d~~~----------------------~vr~~~~~~l~~ 396 (1167)
|+..+..-+..+.. ...+.+.+++..+++.++.++..+++ +.|..+-.++..
T Consensus 360 v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~ 439 (1049)
T 3m1i_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHH
Confidence 66666666666554 12245567888888888777632110 123233334433
Q ss_pred HHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhcc--CChhhHHHHHHHHHHHHHhcCchhH-hhhhhhHHHHH
Q 001062 397 LVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE--KSIKTKVGAFSVLRELVVVLPDCLA-DHIGSLIPGIE 473 (1167)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~--~~~~~r~~~~~~l~~l~~~~~~~l~-~~l~~l~~~l~ 473 (1167)
+....+ ...++.+.+.+.+.+.+ .+|+.+++++.+++++++...+... ++++.+++.+.
T Consensus 440 l~~~~~------------------~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~ 501 (1049)
T 3m1i_C 440 LTHLNV------------------IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL 501 (1049)
T ss_dssp HHHHCH------------------HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHccCH------------------HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHH
Confidence 332211 23445666666666653 5789999999999998876655433 45788888777
Q ss_pred HhcccCC---CCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcc-cc
Q 001062 474 KSLNDKS---STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE-GL 549 (1167)
Q Consensus 474 ~~l~d~~---~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~-~~ 549 (1167)
....-.. ....++..++.+++.+.+-... -..+++.+++.++.++.+++++|+..|..++..+++..+.... ..
T Consensus 502 ~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~--~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~ 579 (1049)
T 3m1i_C 502 DLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQ 579 (1049)
T ss_dssp HHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCC
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6432111 1233454577777765432111 1358889999999999998999999999999999987543110 00
Q ss_pred CCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCc--ccccchhhhHHHHHHh
Q 001062 550 GFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGD--NLGAELPACLPVLVDR 610 (1167)
Q Consensus 550 ~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~--~l~~~~~~~l~~L~~~ 610 (1167)
.....||++.++..+...+.. .+.+-....+.|+|.++...++ ...+++..+++.+.++
T Consensus 580 ~~~~~p~~~~il~~l~~~~~~--~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~ 640 (1049)
T 3m1i_C 580 PRESEPFIQTIIRDIQKTTAD--LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMA 640 (1049)
T ss_dssp TTCSSCHHHHHHHTHHHHHTT--SCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 123459999999988877753 4555677889999999988773 3445777777766544
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.60 E-value=4.3e-13 Score=162.17 Aligned_cols=399 Identities=13% Similarity=0.110 Sum_probs=272.3
Q ss_pred HHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh
Q 001062 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~ 165 (1167)
++.|...+.++++..|..|+.+|+.++..-+......-+-..++|.|+..|.+++ ++.++..++.+|+.+.........
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED-FPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5556666666666777778888887766544211222233467889998887653 488999999999998864222111
Q ss_pred H-HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH--HHH--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 166 N-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD--LLA--KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 166 ~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~--~~~--~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
. .....++.++..+.++++.+|..|+.+|+.++...+.. .+- ..++.++..+.+.. +...++.++.+++.++..
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT-KLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcC
Confidence 1 11246788888898888999999999999998653321 121 25778888884433 358899999999999987
Q ss_pred hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHH-HHHHHHHHhhccCCCCCCCCCCCCc
Q 001062 241 VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSYDPNFTDNMEEDSD 319 (1167)
Q Consensus 241 ~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~-~ii~~~~~~l~~dp~~~~~~~~d~~ 319 (1167)
.+..-......++|.+...+.+ .+++++..+++++..+....+......+. .+++.+.+++..
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~------------- 297 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHS---NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH------------- 297 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTC---CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC-------------
T ss_pred CCCCcHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC-------------
Confidence 5443333557889999999987 78999999999999988554322222211 345566665541
Q ss_pred ccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHH-HHHhhHHHhhhccC-ChhHHHHHHHHHHHH
Q 001062 320 DEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKER-EENVKMDVFNTFIEL 397 (1167)
Q Consensus 320 ~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~-~~i~p~L~~~l~d~-~~~vr~~~~~~l~~l 397 (1167)
.+|.+|..|+.+|+.+....+.....++ ..++|.|+..+++. ++.++..+..+++.+
T Consensus 298 ---------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 298 ---------------------PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp ---------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ---------------------CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 1368999999999999876554333333 34678888888777 899999999998888
Q ss_pred HHhhCCCCCCccCCCCCchHHHHHHHH-HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh--hhhHHHHHH
Q 001062 398 VRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGIEK 474 (1167)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~l~~~~-~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~l~~~l~~ 474 (1167)
.... + ......+ ..+++.+...|.+.++.+|..++.+|..++.........++ ..+++.+..
T Consensus 357 ~~~~--------------~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~ 421 (528)
T 4b8j_A 357 TAGN--------------K-DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD 421 (528)
T ss_dssp HTSC--------------H-HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred HCCC--------------H-HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence 6421 1 1122211 24566777777778889999999999999876433333444 467889999
Q ss_pred hcccCCCCchHHHHHHHHHHHHhccCC---------CCchhhhhH--hhHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 001062 475 SLNDKSSTSNLKIEALTFTRLVLSSHS---------PPVFHPYIK--ALSSPVLAAVGERYYKVTAEALRVCGELVR 540 (1167)
Q Consensus 475 ~l~d~~~~~~~~~~al~~l~~l~~~~~---------~~~~~~~l~--~ll~~l~~~l~d~~~~v~~~al~~l~~l~~ 540 (1167)
.|.+. +..++..++.++..++.... .+.+...+. ..+..+.....+.+..++..|..++..++.
T Consensus 422 lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 422 LLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp GGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 99875 46888899999998876421 111222222 124556666667788888888888887754
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.60 E-value=1.1e-12 Score=162.28 Aligned_cols=472 Identities=13% Similarity=0.081 Sum_probs=309.3
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh----HHHHHHHHHHHhcCC-CcchhcHHHHHHHHHHhhcCCch
Q 001062 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR----VVEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSS 119 (1167)
Q Consensus 45 ~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~----~~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~~~~~~~~~ 119 (1167)
...++.|++.|.++++.||..|+++|+.++..-.... ....++.|...+.++ +.++|..++.+|+.+...-.
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~--- 89 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--- 89 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH---
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh---
Confidence 4467888889999999999999999999997554321 125677888877754 56678888888887654321
Q ss_pred hHHHH-HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHhhhhcCChHHHHHHHHHHHHHH
Q 001062 120 LAQSI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND-HERLLSALLPQLSANQASVRKKSVSCIASL 197 (1167)
Q Consensus 120 ~~~~~-~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~-~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l 197 (1167)
....+ -...+|.|+..|.++ ++.++..++.+|..++.......... ....++.++..+.++++.++..++.+|..+
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence 11111 124788899888875 58999999999999987753322212 245788899999888889999999999999
Q ss_pred HhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch--hhhHHHHHHHhhhcCCCChhHH
Q 001062 198 ASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELR 271 (1167)
Q Consensus 198 ~~~~~~~---~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l--~~lvp~l~~~l~~~~e~~~e~r 271 (1167)
+...++. +. ...++.++..+++... ...+..++.++..++.... ...++ ...+|.++..+.+ .+.+++
T Consensus 168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~-~~~~~~a~~~L~nLs~~~~--~~~~l~~~g~l~~L~~ll~~---~~~~~~ 241 (644)
T 2z6h_A 168 AYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTD---PSQRLV 241 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHTTCTT--HHHHHHHTTHHHHHHTTTTC---SCHHHH
T ss_pred HhcCcHHHHHHHHcCChHHHHHHHHcCCh-HHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHhc---CCHHHH
Confidence 8643222 11 2357777787776543 4566777778777764321 12222 3478888888877 678999
Q ss_pred HHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHH
Q 001062 272 EYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAK 351 (1167)
Q Consensus 272 e~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~ 351 (1167)
+.+++++..+....+.. .....+++.+.+++.. .++++|+.|+.
T Consensus 242 ~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~----------------------------------~d~~v~~~a~~ 285 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS----------------------------------DDINVVTCAAG 285 (644)
T ss_dssp HHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTC----------------------------------SCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcC----------------------------------CCHHHHHHHHH
Confidence 99999999998765432 2345677777777641 12589999999
Q ss_pred HHHHHHhcCChhhHHHHH-HHhhHHHhhhccC--ChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HH
Q 001062 352 CLAALIVSRPEMLSKLYE-EACPKLIDRFKER--EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SK 426 (1167)
Q Consensus 352 ~l~~li~~~~~~l~~~~~-~i~p~L~~~l~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~ 426 (1167)
+|..+....++....+++ ..+|.|++.+.+. .+.|+..++.+++.+....+. ....+..+ ..
T Consensus 286 aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~-------------~~~~q~~v~~~~ 352 (644)
T 2z6h_A 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE-------------AEMAQNAVRLHY 352 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT-------------HHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCch-------------HHHHHHHHHHcc
Confidence 999987754432222222 3567777777543 278999998888877432110 00111111 23
Q ss_pred HHHHHHHHhccCC-hhhHHHHHHHHHHHHHhcCchhHhh-hhhhHHHHHHhcccC--------------------CCCch
Q 001062 427 IVKSINRQLREKS-IKTKVGAFSVLRELVVVLPDCLADH-IGSLIPGIEKSLNDK--------------------SSTSN 484 (1167)
Q Consensus 427 l~~~l~~~L~~~~-~~~r~~~~~~l~~l~~~~~~~l~~~-l~~l~~~l~~~l~d~--------------------~~~~~ 484 (1167)
.++.+.+.|.+.+ +.++..++.+++.++..- ...... -..++|.+.+.|.+. .....
T Consensus 353 ~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~ 431 (644)
T 2z6h_A 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 431 (644)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHH
T ss_pred ChHHHHHHhCccCchHHHHHHHHHHHHHccCH-HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHH
Confidence 5667777887764 688989998998886421 111110 124455555555532 11234
Q ss_pred HHHHHHHHHHHHhccCCCCchhhhh--HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchH--HH
Q 001062 485 LKIEALTFTRLVLSSHSPPVFHPYI--KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ--PI 560 (1167)
Q Consensus 485 ~~~~al~~l~~l~~~~~~~~~~~~l--~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~--~l 560 (1167)
++..++.++..+.... .....+ ...+|.++..+.+...+++..|..++..+... + .....+. ..
T Consensus 432 v~~~a~~aL~~La~~~---~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~-------~~~~~i~~~g~ 499 (644)
T 2z6h_A 432 IVEGCTGALHILARDV---HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--K-------EAAEAIEAEGA 499 (644)
T ss_dssp HHHHHHHHHHHHTTSH---HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--H-------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCH---HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--H-------HHHHHHHHcCC
Confidence 6667778888776531 222222 35789999999999999999999999888642 1 0111111 12
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 001062 561 YNAIMSRLTNQDQDQEVKECAISCMGLVIST 591 (1167)
Q Consensus 561 ~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~ 591 (1167)
++.+.+.+. +.+.+||..|..+++.+...
T Consensus 500 l~~L~~ll~--~~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 500 TAPLTELLH--SRNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp HHHHHHHTT--CSCHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHc--CCCHHHHHHHHHHHHHHhcc
Confidence 334444443 56889999999999998654
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.59 E-value=3.5e-12 Score=155.89 Aligned_cols=455 Identities=12% Similarity=0.115 Sum_probs=283.8
Q ss_pred HHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch
Q 001062 170 RLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL 249 (1167)
Q Consensus 170 ~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l 249 (1167)
..+..+.+.++++++.+|..|+.+++.++ ..+....+++.+...+.+++ ..+|+.|+.+++.+.+..|+.+.
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~--~~VRk~A~~al~~l~~~~p~~v~--- 178 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSN--SYLRKKAALCAVHVIRKVPELME--- 178 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCC--HHHHHHHHHHHHHHHHHCGGGGG---
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHChHHHH---
Confidence 45566777888888899999999998887 45677788888888888764 48999999999999998776544
Q ss_pred hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCc---cccccHHHHHHHHHHhhc--cCCCCCCCCCCCCcccccc
Q 001062 250 GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR---DISSYCDEILHLTLEYLS--YDPNFTDNMEEDSDDEAYE 324 (1167)
Q Consensus 250 ~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~---~~~~~l~~ii~~~~~~l~--~dp~~~~~~~~d~~~~~~~ 324 (1167)
.+++.+...+.+ .++.++.+|+.++..+....|+ .+.++++.++..+...+. +.|.|...
T Consensus 179 -~~~~~l~~lL~D---~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~----------- 243 (618)
T 1w63_A 179 -MFLPATKNLLNE---KNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVS----------- 243 (618)
T ss_dssp -GGGGGTTTSTTC---CCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSS-----------
T ss_pred -HHHHHHHHHhCC---CCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCcccccc-----------
Confidence 344445555555 7888999999988888755442 344556666666555432 22332211
Q ss_pred cccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhh---ccCChhHHHHHHHHHHHHHHhh
Q 001062 325 EEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF---KEREENVKMDVFNTFIELVRQT 401 (1167)
Q Consensus 325 ~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l---~d~~~~vr~~~~~~l~~l~~~~ 401 (1167)
. ....|- +-...++++.+....|+.-. .+..+++.++... +..+..|..++..++..+ .
T Consensus 244 ------------~-~~~~~~-q~~il~~L~~l~~~~~~~~~-~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l---~ 305 (618)
T 1w63_A 244 ------------G-ISDPFL-QVRILRLLRILGRNDDDSSE-AMNDILAQVATNTETSKNVGNAILYETVLTIMDI---K 305 (618)
T ss_dssp ------------S-SSCHHH-HHHHHHHHHHHTTTCHHHHH-TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS---C
T ss_pred ------------C-CCCChH-HHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHhccccccchHHHHHHHHHHHHHhc---C
Confidence 0 112364 33466777777655443211 1222333333221 223346666666665442 1
Q ss_pred CCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCC
Q 001062 402 GNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSS 481 (1167)
Q Consensus 402 ~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~ 481 (1167)
. .+ ......++.+.+.+.++++.+|..++..+..++...|..+.+|. +.++.++.|.
T Consensus 306 ~------------~~-----~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~----~~i~~~l~d~-- 362 (618)
T 1w63_A 306 S------------ES-----GLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHR----STIVDCLKDL-- 362 (618)
T ss_dssp C------------CH-----HHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGH----HHHHHGGGSS--
T ss_pred C------------CH-----HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHH----HHHHHHccCC--
Confidence 1 01 11234556677778888889999999999999987776655544 4666777776
Q ss_pred CchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHH
Q 001062 482 TSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIY 561 (1167)
Q Consensus 482 ~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~ 561 (1167)
+..+|..++.++..++.. .. +..+++.+...+.+.+..++..++..++.++..+.+ .+..|+
T Consensus 363 d~~Ir~~alelL~~l~~~---~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~-------~~~~~v---- 424 (618)
T 1w63_A 363 DVSIKRRAMELSFALVNG---NN----IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAP-------SKRWHI---- 424 (618)
T ss_dssp CHHHHHHHHHHHHHHCCS---SS----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCC-------CHHHHH----
T ss_pred ChhHHHHHHHHHHHHccc---cc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCc-------cHHHHH----
Confidence 568999999999988763 22 356677777888778889999999999999876433 233344
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhcCCCC---Cc---
Q 001062 562 NAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLH---ID--- 635 (1167)
Q Consensus 562 ~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~~~~---~~--- 635 (1167)
+.+++.+... ...++..++.++..++....+.-...+..++..+.+....+.....+++.+|+.+..-.. .+
T Consensus 425 ~~ll~lL~~~--~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~ 502 (618)
T 1w63_A 425 DTIMRVLTTA--GSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEP 502 (618)
T ss_dssp HHHHHHHHHT--GGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHHHHHhc--cchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccc
Confidence 4444445432 234566677788888876443211123333333333222344455789999987631000 00
Q ss_pred hhhHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhh
Q 001062 636 LTCVLEHVIAELTAFLR--KANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMA 713 (1167)
Q Consensus 636 ~~~~~~~~l~~L~~~L~--~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~ 713 (1167)
+...-..++..|..++. ..+..+|..++.++..+....++. .+.+..+ +.....+.|..+++-|...+..+..
T Consensus 503 ~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~---L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 503 IQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKV---VSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHH---HHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 00001223344444444 467889999999999998766531 2222333 3334577888999999888777643
No 38
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.59 E-value=2.8e-12 Score=168.13 Aligned_cols=517 Identities=11% Similarity=0.080 Sum_probs=302.9
Q ss_pred cCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCC-------CChhHHHHHHHHHHHhhhhcChhhHHHHH
Q 001062 14 TGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-------VAGDVSGLAVKCLAPLVKKVSEPRVVEMT 86 (1167)
Q Consensus 14 ~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d-------~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~ 86 (1167)
.+.++.+|+.|+.-|.+.+++.|..++++....|.+.++..+.. +.+.||+....+++.++.+--++.|+.++
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll 136 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDML 136 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHH
Confidence 56688999999999999999988888888888888888887642 46899999999999999876667899999
Q ss_pred HHHHHHhcCCCcchhcHHHHHHHHHHhhcCC-c--------hh---HHHHHHHHHHHHHHhhhcc---------------
Q 001062 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTT-S--------SL---AQSIHTSLTPQLTKGITLK--------------- 139 (1167)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~-~--------~~---~~~~~~~i~p~Ll~~l~~~--------------- 139 (1167)
+.|++.+.+ +...++.+...|..++++... + .+ ....+..|++.+.+.+++.
T Consensus 137 ~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~ 215 (1204)
T 3a6p_A 137 IELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQES 215 (1204)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchh
Confidence 999988765 345578899999999876321 1 01 1111234444444444331
Q ss_pred --CCChhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC--HH---H---H-H
Q 001062 140 --DMNTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLS--DD---L---L-A 207 (1167)
Q Consensus 140 --~~~~~v~~~~~~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~--~~---~---~-~ 207 (1167)
+.+..++..+++++...+......+. .....+++.++..+.+ +.+|..|+.||..++.... ++ + + .
T Consensus 216 ~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~ 293 (1204)
T 3a6p_A 216 KAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGD 293 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSH
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhh
Confidence 00123444455554433332221111 1112477877776654 5789999999999997542 22 1 1 1
Q ss_pred HHHHHHHHHhh--cCC----CChHHHHHHHHHHHHHHHHhhh--------hhhcchhhhHHHHHHHhhhcCCCChhHHHH
Q 001062 208 KATIEVVRNLR--SKG----AKPEMIRTNIQMVGALSRAVGY--------RFGPHLGDTVPVLIDYCTSASENDEELREY 273 (1167)
Q Consensus 208 ~l~~~l~~~l~--~~~----~~~~~r~~~~~~l~~l~~~~~~--------~~~p~l~~lvp~l~~~l~~~~e~~~e~re~ 273 (1167)
..+..++.... ++. .+.+.++....++..+....-. ...+++..++++++.++.+ ++.++...
T Consensus 294 ~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~---~~~~vs~~ 370 (1204)
T 3a6p_A 294 VAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTH---PSQFLRSS 370 (1204)
T ss_dssp HHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTS---SCHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhC---ccHHhHHH
Confidence 22334444432 111 1234455555555555432111 2456788999999999988 67788777
Q ss_pred HHHHHHHHHHhC----CccccccHHHHHHHH---HHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHH
Q 001062 274 SLQALESFLLRC----PRDISSYCDEILHLT---LEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVR 346 (1167)
Q Consensus 274 al~~l~~l~~~~----~~~~~~~l~~ii~~~---~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR 346 (1167)
++.++..+++.. ...+.++++++++++ +.-++|+++. +..+.....+|++++ +|+++.-|..|
T Consensus 371 ~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~----~~~~~~~~~~D~d~~------~E~~~~f~~~R 440 (1204)
T 3a6p_A 371 TQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKT----DSPSCEYSRFDFDSD------EDFNAFFNSSR 440 (1204)
T ss_dssp HHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCC----SSTHHHHHHHHCSSH------HHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCcccc----CCcchhhhhcccCCc------HHHHHHHHHHH
Confidence 877777676553 234678999999998 5455554321 000000000001000 01113358999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhcc-----------------------CCh--hHHHHHHHHHHHHHHhh
Q 001062 347 RAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKE-----------------------REE--NVKMDVFNTFIELVRQT 401 (1167)
Q Consensus 347 ~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d-----------------------~~~--~vr~~~~~~l~~l~~~~ 401 (1167)
+.....+..+....|+. .+..+.+.+.+.+.. ..+ ......+..+.++++..
T Consensus 441 k~~~d~l~~i~~v~p~~---~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~ 517 (1204)
T 3a6p_A 441 AQQGEVMRLACRLDPKT---SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQM 517 (1204)
T ss_dssp HHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877743 233333443333221 011 11222223333333322
Q ss_pred CCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCC-
Q 001062 402 GNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKS- 480 (1167)
Q Consensus 402 ~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~- 480 (1167)
.. +. +..+.+ ....|.+++.+... ...++.+|...+.+++.+...+.. -.++++.+++.|+..+.+..
T Consensus 518 ~~---~~--e~~~l~----~~~~~~Ll~~ll~~-~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~ 586 (1204)
T 3a6p_A 518 FR---TL--NREEIP----VNDGIELLQMVLNF-DTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETV 586 (1204)
T ss_dssp HH---HS--CTTCCC----HHHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTT
T ss_pred hc---cc--cccccc----HHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCc
Confidence 10 00 000111 12345555543332 234677888888888877665421 13568888888888876521
Q ss_pred ---------CCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCc---h---HHHHHHHHHHHHHHHhccCC
Q 001062 481 ---------STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERY---Y---KVTAEALRVCGELVRVLRPS 545 (1167)
Q Consensus 481 ---------~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~---~---~v~~~al~~l~~l~~~~~~~ 545 (1167)
...+++..|+..+..+.+.++ +.+.||++.|...+...+.... . ..-.+|+.++ ...+++.
T Consensus 587 ~~~~~~~~~~~k~vr~~a~~al~~L~~~~~-~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~i---a~~~~~~ 662 (1204)
T 3a6p_A 587 EESKAPRTRAVRNVRRHACSSIIKMCRDYP-QLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLI---SNQFKNY 662 (1204)
T ss_dssp CSTTSCCCHHHHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHH---HGGGCCH
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHH---hccCCCH
Confidence 123688889999999988764 6788999999998887664221 2 2333444443 3333331
Q ss_pred ccccCCCCccchHHHHHHHHHHhh
Q 001062 546 VEGLGFDFKPYVQPIYNAIMSRLT 569 (1167)
Q Consensus 546 ~~~~~~~~~~~l~~l~~~ll~~l~ 569 (1167)
.....|++.+++.+++.+.
T Consensus 663 -----~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 663 -----ERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp -----HHHHHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHHHHHHHc
Confidence 1234467788887777765
No 39
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.59 E-value=4e-13 Score=168.72 Aligned_cols=510 Identities=10% Similarity=0.064 Sum_probs=317.3
Q ss_pred HHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh
Q 001062 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~ 165 (1167)
++.+.+.+.+++...|..++..++.. .+ ..+....+|.|+..|.+. ++.+|..++.+|..+.........
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~-~~-------~~i~~g~ip~Lv~lL~~~--d~~vr~~A~~~L~~L~~~~~~~~~ 186 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQ-DD-------AELATRAIPELTKLLNDE--DQVVVNKAAVMVHQLSKKEASRHA 186 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhh-hH-------HHHHhCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhCCChhHHH
Confidence 45566666666666666555555432 11 123356788888888754 689999999999998864332111
Q ss_pred -HHHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCHH--HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH
Q 001062 166 -NDHERLLSALLPQLSAN-QASVRKKSVSCIASLASSLSDD--LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRA 240 (1167)
Q Consensus 166 -~~~~~l~~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~--~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~ 240 (1167)
...+..++.++..|.++ ++.+|+.|+.+|..++..-... +. ...++.++..+++++ ...+..++.++..++..
T Consensus 187 i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~--~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPV--DSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHHHH
T ss_pred HHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhCC
Confidence 11245677777777654 6799999999999987642221 11 236788888887764 57899999999999986
Q ss_pred hhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccH-HHHHHHHHHhhccCCCCCCCCCCCC
Q 001062 241 VGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDNMEEDS 318 (1167)
Q Consensus 241 ~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l-~~ii~~~~~~l~~dp~~~~~~~~d~ 318 (1167)
.+..-.... ..++|.++..+.+ .+.++++.+..++..|...+++.-..+. ...++.+.++++. ++
T Consensus 265 ~~~~~~~v~~~g~v~~Lv~lL~~---~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~-~~--------- 331 (780)
T 2z6g_A 265 QEGAKMAVRLAGGLQKMVALLNK---TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-YT--------- 331 (780)
T ss_dssp STTHHHHHHHTTHHHHHHHGGGC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT-CC---------
T ss_pred ChhhHHHHHHcCCHHHHHHHHhc---CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc-CC---------
Confidence 443222222 4689999999987 7788999999999888754332111111 1334555555541 00
Q ss_pred cccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHH-HHHhhHHHhhhccCChhHHHHHHHHHHHH
Q 001062 319 DDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKEREENVKMDVFNTFIEL 397 (1167)
Q Consensus 319 ~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~-~~i~p~L~~~l~d~~~~vr~~~~~~l~~l 397 (1167)
...++..++.++..+..+ ++....+. ..++|.|+..+++.++.++..+..++..+
T Consensus 332 -----------------------~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 332 -----------------------YEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 125666788888877653 32222222 23578888888888888988888888887
Q ss_pred HHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhh-hhhhHHHHHHhc
Q 001062 398 VRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADH-IGSLIPGIEKSL 476 (1167)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~-l~~l~~~l~~~l 476 (1167)
.+..... .....+++.+.+.+.++++.+|..++.+|..|+...+...... -...++.+.+.|
T Consensus 388 ~~~~~~~-----------------~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 450 (780)
T 2z6g_A 388 SDAATKQ-----------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450 (780)
T ss_dssp HTTCTTC-----------------SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHH
T ss_pred hccchhh-----------------hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 7543210 1124567777788888899999999999998865322211111 134567777777
Q ss_pred ccCCCCchHHHHHHHHHHHHhccCCCCc-hhhh--hHhhHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhccCCccccCCC
Q 001062 477 NDKSSTSNLKIEALTFTRLVLSSHSPPV-FHPY--IKALSSPVLAAVGERY-YKVTAEALRVCGELVRVLRPSVEGLGFD 552 (1167)
Q Consensus 477 ~d~~~~~~~~~~al~~l~~l~~~~~~~~-~~~~--l~~ll~~l~~~l~d~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~ 552 (1167)
.+......++..++.+++.+...+.... .+.. -...+|.+...+.+.. +.++.+|+.+++++... +..
T Consensus 451 ~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~--~~~------ 522 (780)
T 2z6g_A 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PAN------ 522 (780)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS--HHH------
T ss_pred HccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC--HHH------
Confidence 6533223789999999999865432111 1111 1346888888888665 49999999999999742 110
Q ss_pred Cccch-HHHHHHHHHHhhcC--------------------CCCHHHHHHHHHHHHHHHHhcCcccccc--hhhhHHHHHH
Q 001062 553 FKPYV-QPIYNAIMSRLTNQ--------------------DQDQEVKECAISCMGLVISTFGDNLGAE--LPACLPVLVD 609 (1167)
Q Consensus 553 ~~~~l-~~l~~~ll~~l~~~--------------------d~~~~vr~~Ai~alg~l~~~~g~~l~~~--~~~~l~~L~~ 609 (1167)
..... ..+++.+++.+... ....++++.+..+++.+... ...... -..+++.|++
T Consensus 523 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~ 600 (780)
T 2z6g_A 523 HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD--IHNRIVIRGLNTIPLFVQ 600 (780)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC--hhhHHHHHHCCcHHHHHH
Confidence 00011 12334444433221 11246788888888887521 100011 1346778887
Q ss_pred hhcC--chhhHHHHHHHHHHhcCCCCCchhhHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhC
Q 001062 610 RMGN--EITRLTAVKAFAVIAASPLHIDLTCVLEH--VIAELTAFLRKANRALRQATLGTMNSLVVAYG 674 (1167)
Q Consensus 610 ~L~~--e~~r~~a~~al~~i~~~~~~~~~~~~~~~--~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~ 674 (1167)
.+.+ +.++..|+.++.+++.. .+....+.. .++.|..++.+.+..+|..|..+|..++...+
T Consensus 601 lL~~~~~~v~~~a~~aL~~L~~~---~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 601 LLYSPIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHcCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 7754 45788899999988732 112223333 56777888888899999999999999987544
No 40
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.57 E-value=1.8e-11 Score=156.09 Aligned_cols=553 Identities=12% Similarity=0.101 Sum_probs=344.0
Q ss_pred CCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcC-hhhHHHHHHHH--HH
Q 001062 15 GKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS-EPRVVEMTDKL--CI 91 (1167)
Q Consensus 15 ~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~-~~~~~~l~~~L--~~ 91 (1167)
+.+++++-+++..|...+. |...+.-....+++.+++.|++ +++|..|++||..++.+-. ++.-..++..| ..
T Consensus 204 ~~~~~l~~~~L~~l~s~i~--wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVS--WININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTT--TSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh--hcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 4688999999999999997 4322222236899999999987 7999999999999986543 22222333332 22
Q ss_pred Hhc-----CCCcchhc-----HHHH--HHHHHHhhcCC----c--hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHH
Q 001062 92 KLL-----NGKDQHRD-----IASI--ALKTIIAEVTT----S--SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDIL 153 (1167)
Q Consensus 92 ~~~-----~~~~~~r~-----~a~~--aL~~~~~~~~~----~--~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L 153 (1167)
.+. +.+.+... +..+ .+-.+ +..+. + ......+..++|.++..+.++ +++|...+++.+
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw 356 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFL 356 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHH
Confidence 221 12222221 1111 22222 22221 0 122356677889999888775 478888899999
Q ss_pred HHHHHHhc---------cchhHHHHHHHHHHhhhhcCCh----------------HHHHHHHHHHHHHHHhhcCHHHHH-
Q 001062 154 CDVLHKFG---------NLMSNDHERLLSALLPQLSANQ----------------ASVRKKSVSCIASLASSLSDDLLA- 207 (1167)
Q Consensus 154 ~~l~~~~g---------~~l~~~~~~l~~~ll~~l~~~~----------------~~vrk~a~~~l~~l~~~~~~~~~~- 207 (1167)
.+++.... ..+.++...+++.++..+..+. ...||.....+..++...++..+.
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 98886532 2234777888888887765321 157888776666665555555555
Q ss_pred ---HHHHHHHHHhh---cCCCChHHHHHHHHHHHHHHHHhhh------hhhcchhhhHHHHHHHhhhc--CCCChhHHHH
Q 001062 208 ---KATIEVVRNLR---SKGAKPEMIRTNIQMVGALSRAVGY------RFGPHLGDTVPVLIDYCTSA--SENDEELREY 273 (1167)
Q Consensus 208 ---~l~~~l~~~l~---~~~~~~~~r~~~~~~l~~l~~~~~~------~~~p~l~~lvp~l~~~l~~~--~e~~~e~re~ 273 (1167)
.+.+.+.+.+. +.+ +..++.++.+++++++++.. ...++++.+++++...++.. .+..+-+|..
T Consensus 437 ~~~~i~~~l~~~l~~~~~~~--W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~ 514 (980)
T 3ibv_A 437 MYSAITSSLSTAATLSPENS--WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLL 514 (980)
T ss_dssp HHHHHHHHHHHHTTSCHHHH--HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCC--HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 33333334442 223 48899999999999998653 23478899999998887621 1267889999
Q ss_pred HHHHHHHHHHhCCccccccHHHHHHHHHH--hhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHH
Q 001062 274 SLQALESFLLRCPRDISSYCDEILHLTLE--YLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAK 351 (1167)
Q Consensus 274 al~~l~~l~~~~~~~~~~~l~~ii~~~~~--~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~ 351 (1167)
++++++......... ..|++.+++.++. .+. +|+ -+||.+|+.
T Consensus 515 ~~~~l~rys~~~~~~-~~~l~~~L~~ll~~~gl~-~~~---------------------------------~~V~~~a~~ 559 (980)
T 3ibv_A 515 YMEILVRYASFFDYE-SAAIPALIEYFVGPRGIH-NTN---------------------------------ERVRPRAWY 559 (980)
T ss_dssp HHHHHHHTGGGGGTC-CTTHHHHHHHHTSTTTTT-CCC---------------------------------TTTHHHHHH
T ss_pred HHHHHHHHHHHHhcC-chhHHHHHHHHhcccccc-CCC---------------------------------hhHHHHHHH
Confidence 998888766654321 2577777777655 332 221 279999999
Q ss_pred HHHHHHhcCChhhHHHHHHHhhHHHhhhc---cC---C---------------hhHHHHHHHHHHHHHHhhCCCCCCccC
Q 001062 352 CLAALIVSRPEMLSKLYEEACPKLIDRFK---ER---E---------------ENVKMDVFNTFIELVRQTGNVTKGQID 410 (1167)
Q Consensus 352 ~l~~li~~~~~~l~~~~~~i~p~L~~~l~---d~---~---------------~~vr~~~~~~l~~l~~~~~~~~~~~~~ 410 (1167)
++..+.+..+..+.++.+.++..+-..+. ++ + -+-+..++++++.++...+..
T Consensus 560 af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~------ 633 (980)
T 3ibv_A 560 LFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLT------ 633 (980)
T ss_dssp HHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCC------
Confidence 99999997765555555555444332221 11 1 013556888999998765310
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhccCChh----h-HHHHHHHHHHHHHhcCch------hHhhhhhhHHHHHHhcccC
Q 001062 411 NNELNPRWLLKQEVSKIVKSINRQLREKSIK----T-KVGAFSVLRELVVVLPDC------LADHIGSLIPGIEKSLNDK 479 (1167)
Q Consensus 411 ~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~----~-r~~~~~~l~~l~~~~~~~------l~~~l~~l~~~l~~~l~d~ 479 (1167)
.+.....+...+++++..+.+.+...... . -+..+.+++.++..+++. +...+.++++.+..+++.-
T Consensus 634 --~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~ 711 (980)
T 3ibv_A 634 --PEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRM 711 (980)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 00011356667778887777777543211 1 123455677887766432 4566778888887777754
Q ss_pred CCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHH
Q 001062 480 SSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQP 559 (1167)
Q Consensus 480 ~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~ 559 (1167)
..+..+|..+..+++.++...+ ..+.|++++++..+....+- .--.+-+.++++++..++. ++.+.+..
T Consensus 712 ~~~~~irea~~~~~~r~i~~lg-~~~~p~lp~~i~~ll~~~~~---~e~~~fL~l~~qli~~f~~-------~~~~~l~~ 780 (980)
T 3ibv_A 712 GFNEDIRGAVRFTSGRIINVVG-PDMLPKVPQLISILLNSIDM---NELVDVLSFISQLIHIYKD-------NMMEITNR 780 (980)
T ss_dssp CCSHHHHHHHHHHHHHHTTTTH-HHHTTTHHHHHHHHHHHCCT---TTHHHHHHHHHHHHHHTTT-------TSHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 4457899999999999998776 45788888888888854432 3346678999999887765 35666666
Q ss_pred HHHHHHHH----hhcCC--CC-----HHHHHHHHHHHHHHHHhc-Cccc-c----cchhhhHHHHHHh---hcCchhhHH
Q 001062 560 IYNAIMSR----LTNQD--QD-----QEVKECAISCMGLVISTF-GDNL-G----AELPACLPVLVDR---MGNEITRLT 619 (1167)
Q Consensus 560 l~~~ll~~----l~~~d--~~-----~~vr~~Ai~alg~l~~~~-g~~l-~----~~~~~~l~~L~~~---L~~e~~r~~ 619 (1167)
+++.++++ +.... +| ..+|..-+..+..++.+. +..+ + ++++.++..+... +.+..++..
T Consensus 781 ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~ 860 (980)
T 3ibv_A 781 MLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKS 860 (980)
T ss_dssp HHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHH
Confidence 66655554 33211 11 124444455666666542 3333 2 2455556655543 345567889
Q ss_pred HHHHHHHHhcC
Q 001062 620 AVKAFAVIAAS 630 (1167)
Q Consensus 620 a~~al~~i~~~ 630 (1167)
|+..+.+++..
T Consensus 861 a~~~l~~~v~~ 871 (980)
T 3ibv_A 861 SIALVSKMVSL 871 (980)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998843
No 41
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=7.2e-14 Score=149.76 Aligned_cols=195 Identities=16% Similarity=0.246 Sum_probs=164.8
Q ss_pred CCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhh-ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchH
Q 001062 339 EDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPR 417 (1167)
Q Consensus 339 dd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~ 417 (1167)
++.+|+.|++|+.+|..++...|+.....+..+++.|.+.+ +|.+..||..++.+++.+.+..+
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~--------------- 89 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA--------------- 89 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG---------------
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh---------------
Confidence 45689999999999999999866543344577888888889 59999999999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHh
Q 001062 418 WLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVL 497 (1167)
Q Consensus 418 ~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~ 497 (1167)
..+.++++.+++.+.+.+.+++..+|..+..++..++...+ ++.++|.+...+.++ ++.+|.+++.+++.++
T Consensus 90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNK--NPSVKSETALFIARAL 161 (242)
T ss_dssp GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHH
Confidence 24678999999999999999999999999999999987542 678899999999877 5689999999999998
Q ss_pred ccCCCC-chhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHH
Q 001062 498 SSHSPP-VFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYN 562 (1167)
Q Consensus 498 ~~~~~~-~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~ 562 (1167)
..++++ .+.++++.++|.+..+++|++++||..|..+++.+...+|.. .+.+|++.+-+
T Consensus 162 ~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~------~~~~~l~~L~~ 221 (242)
T 2qk2_A 162 TRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK------AVTPLLADVDP 221 (242)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH------HHGGGGTTSCH
T ss_pred HHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH------HHHHHHHhcCH
Confidence 887655 467899999999999999999999999999999999988752 25566655433
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=1.4e-13 Score=147.39 Aligned_cols=191 Identities=17% Similarity=0.186 Sum_probs=164.7
Q ss_pred HHHHHhcCCChhHHhHhHHHHHHHhcc-cccCCChHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHhhhhcCh---hhH
Q 001062 8 AILEKITGKDKDFRYMATSDLLNELNK-ESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSE---PRV 82 (1167)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~~l~~-~~~~~~~~~~~~i~~~ll~~L~-d~~~~Vr~~A~~~l~~l~~~~~~---~~~ 82 (1167)
.+++++.|.|.+.|.+|+..|...++. +.+. .....++++.+.+.+. |+|..||..|++|++.++..+++ .++
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~--~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE--NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC--CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCC--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 478889999999999999999999986 3322 2335788999999995 99999999999999999987765 567
Q ss_pred HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhcc
Q 001062 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN 162 (1167)
Q Consensus 83 ~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~ 162 (1167)
..+++.|+..+.+++..+|+.+..+|.+++...+. +.++|.++..+.++ ++.+|..++..|+.++..+++
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--------~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--------EAQQESIVESLSNK--NPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--------HHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999999999987642 56888899988875 689999999999999988864
Q ss_pred --chhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 001062 163 --LMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKAT 210 (1167)
Q Consensus 163 --~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~ 210 (1167)
.+.++++.+++.+.+.+.++++.||+.|..|++.++...+++.+..++
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 356899999999999999999999999999999999999987555443
No 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.51 E-value=1.5e-11 Score=152.10 Aligned_cols=473 Identities=11% Similarity=0.033 Sum_probs=305.5
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHhhhhcChhh-H
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDD-VAGDVSGLAVKCLAPLVKKVSEPR-V 82 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d-~~~~Vr~~A~~~l~~l~~~~~~~~-~ 82 (1167)
.+..+.+-+.+.|+.+|..|+..|.+.-.....+..--....+++.+++.|.+ ++.++|..|+.+|..++..-.... +
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 46677788889999999999999988765432100000123678888888875 489999999999998875321110 1
Q ss_pred --HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHH
Q 001062 83 --VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1167)
Q Consensus 83 --~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~-~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~ 159 (1167)
...++.|...+.+++..++..++.+|..++...+. ....+. ...+|.|+..|.++ ++.++..++.+|..+...
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~--~~~~v~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT--HHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch--hHHHHHHCCChHHHHHHHCcC--CHHHHHHHHHHHHHHHhc
Confidence 13578888888888888899999999999877543 222232 56789999999875 467888888888877743
Q ss_pred hccchh-HHHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHH--HHH-HHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001062 160 FGNLMS-NDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDD--LLA-KATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1167)
Q Consensus 160 ~g~~l~-~~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~--~~~-~l~~~l~~~l~~~~~~~~~r~~~~~~l 234 (1167)
....-. -.....++.++..+.+.+ ..++..+..++..++..-... +.+ ..++.++..+++. +...++.++.++
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~--~~~~~~~a~~~L 248 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTL 248 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS--CHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 221100 011134566666666554 478888999999888644332 222 3577777777665 357889999999
Q ss_pred HHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccH-HHHHHHHHHhhccCCCCCCC
Q 001062 235 GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDN 313 (1167)
Q Consensus 235 ~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l-~~ii~~~~~~l~~dp~~~~~ 313 (1167)
..+++..+.. .....++|.+++.+.+ +++++|+.+.+++..+....+....... ...++.+.+++...+
T Consensus 249 ~nL~~~~~~~--~~~~~~i~~Lv~lL~~---~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~----- 318 (644)
T 2z6h_A 249 RNLSDAATKQ--EGMEGLLGTLVQLLGS---DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG----- 318 (644)
T ss_dssp HHHGGGCTTC--CSCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT-----
T ss_pred HHHhhcchhh--hhhhhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccC-----
Confidence 9998765432 2356789999999987 7899999999999999765332111111 124555555553100
Q ss_pred CCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCCh--hhHH--HHHHHhhHHHhhhccCC-hhHHH
Q 001062 314 MEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPE--MLSK--LYEEACPKLIDRFKERE-ENVKM 388 (1167)
Q Consensus 314 ~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~--~l~~--~~~~i~p~L~~~l~d~~-~~vr~ 388 (1167)
..+.+|..|+.+|+.+....++ .... .....+|.|++.+++.. +.++.
T Consensus 319 ---------------------------~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~ 371 (644)
T 2z6h_A 319 ---------------------------DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 371 (644)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHH
T ss_pred ---------------------------CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHH
Confidence 1258999999999999765453 1111 12346788888887654 68999
Q ss_pred HHHHHHHHHHHhhCCCCCCccCCCCCchHHHH-H-HHHHHHHHHHHHHh----------------cc--CChhhHHHHHH
Q 001062 389 DVFNTFIELVRQTGNVTKGQIDNNELNPRWLL-K-QEVSKIVKSINRQL----------------RE--KSIKTKVGAFS 448 (1167)
Q Consensus 389 ~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l-~-~~~~~l~~~l~~~L----------------~~--~~~~~r~~~~~ 448 (1167)
++..++..+...... ...+ . ..+|.+++.+...- .+ ....++..++.
T Consensus 372 ~a~~~L~nLa~~~~~-------------~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~ 438 (644)
T 2z6h_A 372 ATVGLIRNLALCPAN-------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG 438 (644)
T ss_dssp HHHHHHHHHTTSGGG-------------HHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHH-------------HHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHH
Confidence 998888777542210 0111 1 23344444333210 00 12335556666
Q ss_pred HHHHHHHhcCchhHhh--hhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhH--hhHHHHHHHhcCCc
Q 001062 449 VLRELVVVLPDCLADH--IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIK--ALSSPVLAAVGERY 524 (1167)
Q Consensus 449 ~l~~l~~~~~~~l~~~--l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~--~ll~~l~~~l~d~~ 524 (1167)
+|..++... ..... -...+|.+.+.|.+. +..++..++.++..+... ......+. ..++.+...+.+.+
T Consensus 439 aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~l~~~---~~~~~~i~~~g~l~~L~~ll~~~~ 511 (644)
T 2z6h_A 439 ALHILARDV--HNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRN 511 (644)
T ss_dssp HHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC---HHHHHHHHHcCChhHHHHHHcCCC
Confidence 776665321 11112 235688888888876 457888888888887642 12222232 24677888888899
Q ss_pred hHHHHHHHHHHHHHHH
Q 001062 525 YKVTAEALRVCGELVR 540 (1167)
Q Consensus 525 ~~v~~~al~~l~~l~~ 540 (1167)
..++..|..+++.+..
T Consensus 512 ~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 512 EGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988854
No 44
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.48 E-value=3.3e-09 Score=135.21 Aligned_cols=571 Identities=10% Similarity=0.088 Sum_probs=321.3
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhh----hcCh
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK----KVSE 79 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~----~~~~ 79 (1167)
..+..+++.+.+++.+.|..|..-|.+.=+. +...... ..++. .+.++.||..|...|...++ .+++
T Consensus 16 ~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s------p~aw~~~-~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~ 86 (1023)
T 4hat_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDN------PDAWQKA-DQILQ--FSTNPQSKFIALSILDKLITRKWKLLPN 86 (1023)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC------TTGGGGH-HHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHcC------ccHHHHH-HHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 3566777888888888888888777543322 1222222 23332 35688999999999988775 3666
Q ss_pred hhHHHHHHHHHHHhcC----C-----CcchhcHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHhhhccCCChhHHHHH
Q 001062 80 PRVVEMTDKLCIKLLN----G-----KDQHRDIASIALKTIIAEV-TTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCEC 149 (1167)
Q Consensus 80 ~~~~~l~~~L~~~~~~----~-----~~~~r~~a~~aL~~~~~~~-~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~ 149 (1167)
+....+-+.|++.+.+ + ..-++..-+.++..++... |. .+ ..+++.+++.++. ++......
T Consensus 87 e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~--~W----p~~l~dL~~~l~~---~~~~~~~~ 157 (1023)
T 4hat_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ--NW----PEFIPELIGSSSS---SVNVCENN 157 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT--TC----TTHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh--hc----hHHHHHHHHHhcC---CHHHHHHH
Confidence 6666665666655432 1 1123333555566555432 22 12 2344555554443 34456666
Q ss_pred HHHHHHHHHHhcc----------------chhHHHHHHHHHHhhhhcC-ChHHHHHHHHHHHHHHHhhcCHHHH--HHHH
Q 001062 150 LDILCDVLHKFGN----------------LMSNDHERLLSALLPQLSA-NQASVRKKSVSCIASLASSLSDDLL--AKAT 210 (1167)
Q Consensus 150 ~~~L~~l~~~~g~----------------~l~~~~~~l~~~ll~~l~~-~~~~vrk~a~~~l~~l~~~~~~~~~--~~l~ 210 (1167)
+.+|..+.+..+. .+....+.+++.+...+.+ ..+.+.+.++.|++....-++-..+ ..++
T Consensus 158 L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll 237 (1023)
T 4hat_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNIL 237 (1023)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHH
Confidence 6666665554321 1234456667777777754 3458889999999998887765532 3466
Q ss_pred HHHH-HHhhcCCCChHHHHHHHHHHHHHHHH-h-hh--hhhcchhhhHHHHHHHh---------------hhcCCCChhH
Q 001062 211 IEVV-RNLRSKGAKPEMIRTNIQMVGALSRA-V-GY--RFGPHLGDTVPVLIDYC---------------TSASENDEEL 270 (1167)
Q Consensus 211 ~~l~-~~l~~~~~~~~~r~~~~~~l~~l~~~-~-~~--~~~p~l~~lvp~l~~~l---------------~~~~e~~~e~ 270 (1167)
+.++ ..+.+ .+.|..++.++..++.. . ++ .+...+..+++.++..+ ...+++|.+.
T Consensus 238 ~~l~~~~L~~----~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~ 313 (1023)
T 4hat_C 238 ELLSTKFMTS----PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSF 313 (1023)
T ss_dssp HHHHTHHHHS----HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHH
T ss_pred HHHHHHHcCC----HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHH
Confidence 6666 55543 46899999999999862 2 22 23333333333332222 1111234554
Q ss_pred HHHHHHHHHHHHHhCCc------cccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchH
Q 001062 271 REYSLQALESFLLRCPR------DISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWK 344 (1167)
Q Consensus 271 re~al~~l~~l~~~~~~------~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~ 344 (1167)
.+.-...+..+.+.... .+.+++...+..++....++ | |.
T Consensus 314 ~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-------d---------------------------~e 359 (1023)
T 4hat_C 314 LQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-------E---------------------------RE 359 (1023)
T ss_dssp HHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-------C---------------------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-------c---------------------------HH
Confidence 44444444444443222 22233333333444432211 0 01
Q ss_pred HHHHHHHHHHHHHh----c--CChhhHHHHHHHhhHHHhhhccCCh---------h---------HHHHHHHHHHHHHHh
Q 001062 345 VRRAAAKCLAALIV----S--RPEMLSKLYEEACPKLIDRFKEREE---------N---------VKMDVFNTFIELVRQ 400 (1167)
Q Consensus 345 vR~aA~~~l~~li~----~--~~~~l~~~~~~i~p~L~~~l~d~~~---------~---------vr~~~~~~l~~l~~~ 400 (1167)
+=+-+..-+..+.. . +.+.+.++|..+++.++.++.-+++ . --.+.++.+...+..
T Consensus 360 i~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~ 439 (1023)
T 4hat_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHH
Confidence 11111111111111 1 2234567888888888877643320 0 011223333222221
Q ss_pred hCCCCCCccCCCCCchHHHH-HHHHHHHHHHHHHHhcc--CChhhHHHHHHHHHHHHHhcCch-hHhhhhhhHHHHHHhc
Q 001062 401 TGNVTKGQIDNNELNPRWLL-KQEVSKIVKSINRQLRE--KSIKTKVGAFSVLRELVVVLPDC-LADHIGSLIPGIEKSL 476 (1167)
Q Consensus 401 ~~~~~~~~~~~~~~~p~~~l-~~~~~~l~~~l~~~L~~--~~~~~r~~~~~~l~~l~~~~~~~-l~~~l~~l~~~l~~~l 476 (1167)
.. ..+ .+.++.+++.+.+.+.+ .+|..+++++.+++++++...+. ..++++.++|.+...+
T Consensus 440 l~---------------~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~ 504 (1023)
T 4hat_C 440 LT---------------HLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLC 504 (1023)
T ss_dssp HH---------------HHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred Hh---------------ccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhh
Confidence 10 000 13445555666666654 57999999999999998876543 6789999999999887
Q ss_pred ccCC---CCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcc-ccCCC
Q 001062 477 NDKS---STSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVE-GLGFD 552 (1167)
Q Consensus 477 ~d~~---~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~-~~~~~ 552 (1167)
.++. ....++..++.+++.+.+-.. .-..+++.++..+..++.+++++++..|..++..+++.++..-. .....
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~--~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e 582 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLK--AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRE 582 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHH--HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTC
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 6421 112355567777776544221 11347888999999999888899999999999999886543110 00223
Q ss_pred CccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCccc--ccchhhhHHHHHHhhcC--------------ch-
Q 001062 553 FKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNL--GAELPACLPVLVDRMGN--------------EI- 615 (1167)
Q Consensus 553 ~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l--~~~~~~~l~~L~~~L~~--------------e~- 615 (1167)
..||++.++..+..... ..+.+-+..++.++|.++...+..- ..++..+++.+...++. ..
T Consensus 583 ~~p~~~~il~~l~~~~~--~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~ 660 (1023)
T 4hat_C 583 SEPFIQTIIRDIQKTTA--DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSET 660 (1023)
T ss_dssp SSCHHHHHHHTHHHHHT--TSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHH
T ss_pred CchhHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHH
Confidence 46899999988877765 4567778899999999998876432 22555555555443211 10
Q ss_pred hh--HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHH
Q 001062 616 TR--LTAVKAFAVIAASPLHIDLTCVLEHVIAELTAF 650 (1167)
Q Consensus 616 ~r--~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~ 650 (1167)
.+ ..-++++..++.+ .+..|.|++..+.+.+...
T Consensus 661 ~~~l~~il~~~~~v~~~-lg~~f~~~~~~i~~~~l~~ 696 (1023)
T 4hat_C 661 VKIIANIIKTNVAVCTS-MGADFYPQLGHIYYNMLQL 696 (1023)
T ss_dssp HHHHHHHHHHHHHHHHH-HGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHH
Confidence 11 1234455555543 2344666776666666544
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.48 E-value=2e-11 Score=147.70 Aligned_cols=469 Identities=11% Similarity=0.028 Sum_probs=296.3
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHhhhhcChh-hH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEP-RV 82 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~-d~~~~Vr~~A~~~l~~l~~~~~~~-~~ 82 (1167)
.+..+.+-+.+.|+++|..|+..|.+.-..+.....--.....++.+++.|. +++.++|..|..+|..++..-... .+
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 4677778888999999999999998766532110000011357888888886 458999999999999987531111 01
Q ss_pred --HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHH-HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHH
Q 001062 83 --VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1167)
Q Consensus 83 --~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~-~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~ 159 (1167)
...++.|...+.++++.++..++.+|..++..-+.. ...+ -...+|.|++.+.++ ++.++..+..+|..+...
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA--KMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH--HHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch--HHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhC
Confidence 135778888888888888999999999998765442 2222 256789999999875 588888888888877642
Q ss_pred hccchhH-HHHHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHH--HH-HHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001062 160 FGNLMSN-DHERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDD--LL-AKATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1167)
Q Consensus 160 ~g~~l~~-~~~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~--~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l 234 (1167)
....-.. .....++.++..+.+++. .++..+..++..++..-... +. ...++.++..++++ +.+.++.++.++
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~L 251 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTL 251 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC--ChHHHHHHHHHH
Confidence 1111000 011235555566655444 66777888888887643322 11 24677777777665 357888999999
Q ss_pred HHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccH-HHHHHHHHHhhccCCCCCCC
Q 001062 235 GALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDN 313 (1167)
Q Consensus 235 ~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l-~~ii~~~~~~l~~dp~~~~~ 313 (1167)
..+++..+.. .....++|.+.+.+.+ +++++|+.+.+++..+....+.....+. ...++.+.+.+...
T Consensus 252 ~~l~~~~~~~--~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~------ 320 (529)
T 1jdh_A 252 RNLSDAATKQ--EGMEGLLGTLVQLLGS---DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA------ 320 (529)
T ss_dssp HHHHTTCTTC--SCCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH------
T ss_pred HHHhcCChhh--HHHHhHHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc------
Confidence 9998865432 2356789999999877 7899999999999999765332211111 12344555555310
Q ss_pred CCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChh--hH-HHH-HHHhhHHHhhhccCC-hhHHH
Q 001062 314 MEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEM--LS-KLY-EEACPKLIDRFKERE-ENVKM 388 (1167)
Q Consensus 314 ~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~--l~-~~~-~~i~p~L~~~l~d~~-~~vr~ 388 (1167)
+..|.+|..|+.+|+.+....|+. .. .+. ...+|.|++.+++.. +.++.
T Consensus 321 --------------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~ 374 (529)
T 1jdh_A 321 --------------------------GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374 (529)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred --------------------------CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHH
Confidence 013689999999999997655531 11 111 235688888887665 58999
Q ss_pred HHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHH----------------------HH
Q 001062 389 DVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKV----------------------GA 446 (1167)
Q Consensus 389 ~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~----------------------~~ 446 (1167)
.+..++..+...... ...+.+ ..+++.+...+.+.++.+|. .+
T Consensus 375 ~a~~~l~nl~~~~~~-------------~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~ 439 (529)
T 1jdh_A 375 ATVGLIRNLALCPAN-------------HAPLRE--QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 439 (529)
T ss_dssp HHHHHHHHHTTSGGG-------------HHHHHH--TTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHH
T ss_pred HHHHHHHHHhcChhh-------------hHHHHH--cCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHH
Confidence 988888777542110 011111 12344444445444444433 33
Q ss_pred HHHHHHHHHhcCchhHhh--hhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhh--HhhHHHHHHHhcC
Q 001062 447 FSVLRELVVVLPDCLADH--IGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYI--KALSSPVLAAVGE 522 (1167)
Q Consensus 447 ~~~l~~l~~~~~~~l~~~--l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l--~~ll~~l~~~l~d 522 (1167)
+.++..++.. +.. ... -...++.+...+.+. ...++..+...+..+... +.....+ ...++.+...+.+
T Consensus 440 ~~al~~L~~~-~~~-~~~l~~~~~v~~l~~ll~~~--~~~v~~~a~~~l~~l~~~---~~~~~~i~~~~~~~~L~~l~~~ 512 (529)
T 1jdh_A 440 TGALHILARD-VHN-RIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHS 512 (529)
T ss_dssp HHHHHHHTTS-HHH-HHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTTS---HHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHhcC-chH-HHHHhccCCccHHHHHHcCC--chHHHHHHHHHHHHHhcC---HHHHHHHHHcCChHHHHHHhcC
Confidence 4444444321 110 000 124568888888876 467888888888887632 1222222 2356788888889
Q ss_pred CchHHHHHHHHHHHHH
Q 001062 523 RYYKVTAEALRVCGEL 538 (1167)
Q Consensus 523 ~~~~v~~~al~~l~~l 538 (1167)
++..|+..|..++..+
T Consensus 513 ~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 513 RNEGVATYAAAVLFRM 528 (529)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999998888765
No 46
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.47 E-value=2.4e-11 Score=146.97 Aligned_cols=469 Identities=13% Similarity=0.095 Sum_probs=296.9
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChh--hH--HHHHHHHHHHhcCC-CcchhcHHHHHHHHHHhhcCC
Q 001062 43 LEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP--RV--VEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTT 117 (1167)
Q Consensus 43 ~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~--~~--~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~~~~~~~ 117 (1167)
.....++.+++.|.++++.||..|+++|+.++..-... .+ ...++.|...+.++ +...|..++.+|+.+...-.
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~- 92 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE- 92 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch-
Confidence 44567889999999999999999999999998543221 11 25677777777644 56778888899988654311
Q ss_pred chhHHHH-HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHhhhhcCChHHHHHHHHHHHH
Q 001062 118 SSLAQSI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIA 195 (1167)
Q Consensus 118 ~~~~~~~-~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~ 195 (1167)
....+ -...+|.|+..|.++ ++.++..++.+|..+.......-.. .....++.++..+.++++.++..+..++.
T Consensus 93 --~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 93 --GLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp --HHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred --hHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11112 225788999988875 5889999999999998764332111 12457888889998888899999999999
Q ss_pred HHHhhcCHH---HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch--hhhHHHHHHHhhhcCCCChh
Q 001062 196 SLASSLSDD---LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEE 269 (1167)
Q Consensus 196 ~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l--~~lvp~l~~~l~~~~e~~~e 269 (1167)
.++...++. +. ...++.++..+++... ...+..+..++..++.. +. ....+ ...+|.+...+.+ .+++
T Consensus 169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~-~~-~~~~~~~~g~~~~L~~ll~~---~~~~ 242 (529)
T 1jdh_A 169 ILAYGNQESKLIILASGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVC-SS-NKPAIVEAGGMQALGLHLTD---PSQR 242 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTS-TT-HHHHHHHTTHHHHHHTTTTS---SCHH
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHHHHHHhcC-cc-cHHHHHHCCCHHHHHHHHhC---CChH
Confidence 887632221 11 1346677777776543 34555667777777642 21 12222 3578888888877 6889
Q ss_pred HHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHH
Q 001062 270 LREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAA 349 (1167)
Q Consensus 270 ~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA 349 (1167)
+++.+.+++..+....+.. .....+++.+.+++.. .++.+|..|
T Consensus 243 ~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~----------------------------------~~~~v~~~a 286 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS----------------------------------DDINVVTCA 286 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTC----------------------------------SCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcC----------------------------------CCHHHHHHH
Confidence 9999999999998765432 2345677777777631 124899999
Q ss_pred HHHHHHHHhcCChhhHHHHH-HHhhHHHhhhcc--CChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--
Q 001062 350 AKCLAALIVSRPEMLSKLYE-EACPKLIDRFKE--REENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV-- 424 (1167)
Q Consensus 350 ~~~l~~li~~~~~~l~~~~~-~i~p~L~~~l~d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~-- 424 (1167)
+.+|+.+....++....+.+ ..+|.|++.+.+ .++.++..++.+++.+....+. ....+..+
T Consensus 287 ~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~-------------~~~~~~~i~~ 353 (529)
T 1jdh_A 287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE-------------AEMAQNAVRL 353 (529)
T ss_dssp HHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT-------------HHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCch-------------HHHHHHHHHH
Confidence 99999987654433333332 256777777754 3378998988888877432110 00011111
Q ss_pred HHHHHHHHHHhccCC-hhhHHHHHHHHHHHHHhcCchhHhhh-hhhHHHHHHhcccCCCCchHH----------------
Q 001062 425 SKIVKSINRQLREKS-IKTKVGAFSVLRELVVVLPDCLADHI-GSLIPGIEKSLNDKSSTSNLK---------------- 486 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~-~~~r~~~~~~l~~l~~~~~~~l~~~l-~~l~~~l~~~l~d~~~~~~~~---------------- 486 (1167)
...++.+.+.+.+++ +.++..++.+++.++.. +....... ..++|.+...+.+. +..++
T Consensus 354 ~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~l~n~~~~~~~ 430 (529)
T 1jdh_A 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRA--HQDTQRRTSMGGTQQQFVEGV 430 (529)
T ss_dssp TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHH--HHHHC-----------CBTTB
T ss_pred cCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHHH--hHHHHHHHhcccCchhhhccc
Confidence 123566777787765 58888888888888742 22111111 24567777766643 12233
Q ss_pred ------HHHHHHHHHHhccCCCCchhhhh--HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchH
Q 001062 487 ------IEALTFTRLVLSSHSPPVFHPYI--KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQ 558 (1167)
Q Consensus 487 ------~~al~~l~~l~~~~~~~~~~~~l--~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~ 558 (1167)
..++..+..+... + .....+ ...++.+...+.+...+++..|..+++.+... + .+...+.
T Consensus 431 ~~~~i~~~~~~al~~L~~~--~-~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~-------~~~~~i~ 498 (529)
T 1jdh_A 431 RMEEIVEGCTGALHILARD--V-HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--K-------EAAEAIE 498 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTS--H-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--H-------HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcC--c-hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--H-------HHHHHHH
Confidence 3444455555431 1 111111 24678888999999999999999999887531 1 0111111
Q ss_pred --HHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 001062 559 --PIYNAIMSRLTNQDQDQEVKECAISCMGLV 588 (1167)
Q Consensus 559 --~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l 588 (1167)
..++.+...+. +.+++|+..|..++..+
T Consensus 499 ~~~~~~~L~~l~~--~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 499 AEGATAPLTELLH--SRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HTTCHHHHHHGGG--CSSHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHhc--CCCHHHHHHHHHHHHhc
Confidence 22334444443 67889999999988765
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.47 E-value=7.7e-11 Score=143.34 Aligned_cols=484 Identities=11% Similarity=0.099 Sum_probs=302.5
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHH
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM 85 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l 85 (1167)
...++.-+.++|...|.|+--.+....+. +++..--++..+.+-|.|+|+.+|..|.++++.+. .++..+.+
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~-----~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---~~e~~~~l 147 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNS-----NSELIRLINNAIKNDLASRNPTFMGLALHCIANVG---SREMAEAF 147 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCC-----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccC-----CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC---CHHHHHHH
Confidence 44566677888888887777776655542 34556677888999999999999999999999885 35567788
Q ss_pred HHHHHHHh--cCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 001062 86 TDKLCIKL--LNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1167)
Q Consensus 86 ~~~L~~~~--~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~ 163 (1167)
++.+.+.+ .+.++-+|..|++|+..++...|. .... ..+++.+.+.|+++ ++.|+..++.++.+++..-+..
T Consensus 148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~--~~~~--~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD--LVPM--GDWTSRVVHLLNDQ--HLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--GCCC--CSCHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--hcCc--hhHHHHHHHHhCCC--CccHHHHHHHHHHHHHHhChHH
Confidence 88888888 778888999999999999985543 1110 14556677777654 6899999999999999877665
Q ss_pred hhHHHHHHHHHHhhhhcCC-------------hHHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCCC--ChH
Q 001062 164 MSNDHERLLSALLPQLSAN-------------QASVRKKSVSCIASLASSLSDDL---LAKATIEVVRNLRSKGA--KPE 225 (1167)
Q Consensus 164 l~~~~~~l~~~ll~~l~~~-------------~~~vrk~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~--~~~ 225 (1167)
+.+..+.+++.+.+.+... ++-.+-+.+..++.++..-.++. +.++++.++..+.+... .-.
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 5455666665555444321 34566677777766664333332 33445555544332110 000
Q ss_pred HH----HHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC--ccccccHHHHHHH
Q 001062 226 MI----RTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP--RDISSYCDEILHL 299 (1167)
Q Consensus 226 ~r----~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~--~~~~~~l~~ii~~ 299 (1167)
.+ ...+.+...+....+ ..+++...++.+...+.+ .++++|-.++.++..++...| ..+.+|...++..
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~~--~~~~~~~~~~~L~~~L~~---~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~ 376 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHDS--EPNLLVRACNQLGQFLQH---RETNLRYLALESMCTLASSEFSHEAVKTHIETVINA 376 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHSSC---SCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 11 122333444433221 233456677777777766 788999999999999987765 2344555544443
Q ss_pred HHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhh
Q 001062 300 TLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF 379 (1167)
Q Consensus 300 ~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l 379 (1167)
++||+ | -.||+.|...+..++.. + -++.++..|.+.+
T Consensus 377 ----L~~d~-------------------------------d--~~Ir~~aL~lL~~l~~~--~----Nv~~Iv~eL~~yl 413 (621)
T 2vgl_A 377 ----LKTER-------------------------------D--VSVRQRAVDLLYAMCDR--S----NAQQIVAEMLSYL 413 (621)
T ss_dssp ----HTTCC-------------------------------C--HHHHHHHHHHHHHHCCH--H----HHHHHHHHHHHHH
T ss_pred ----hccCC-------------------------------C--HhHHHHHHHHHHHHcCh--h----hHHHHHHHHHHHH
Confidence 33221 1 26899998888777643 2 3455555555666
Q ss_pred ccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCc
Q 001062 380 KEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD 459 (1167)
Q Consensus 380 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~ 459 (1167)
.+.+...|.+++.+++.+.....+ .....+..+.+.+......+...++..+..++...|.
T Consensus 414 ~~~d~~~~~~~v~~I~~la~k~~~-------------------~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~ 474 (621)
T 2vgl_A 414 ETADYSIREEIVLKVAILAEKYAV-------------------DYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD 474 (621)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHCS-------------------STHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCC-------------------cHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh
Confidence 667788898998888887654432 1123344444444444334555666666677665554
Q ss_pred hhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCC-CchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHH
Q 001062 460 CLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSP-PVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGEL 538 (1167)
Q Consensus 460 ~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~-~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l 538 (1167)
. .. ..+..+...+.+......+-..+++++|........ ....| ..++..+...+.+....++..++.++..+
T Consensus 475 ~-~~---~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p--~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl 548 (621)
T 2vgl_A 475 V-QG---YAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSP--LIQFNLLHSKFHLCSVPTRALLLSTYIKF 548 (621)
T ss_dssp C-HH---HHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred H-HH---HHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 2 22 234455666766543334445566777776432110 11111 13445556666677889999999999888
Q ss_pred HHhccCCccccCCCCccchHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHH
Q 001062 539 VRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN-QDQDQEVKECAISCMGLV 588 (1167)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~-~d~~~~vr~~Ai~alg~l 588 (1167)
.... | -..+.+..+++.... .+.+.+||++|...+.-+
T Consensus 549 ~~~~-p-----------~~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 549 VNLF-P-----------EVKATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHC-G-----------GGHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHC-h-----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 6542 1 123344445555443 377899999998876654
No 48
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.45 E-value=2.1e-11 Score=145.78 Aligned_cols=399 Identities=13% Similarity=0.136 Sum_probs=266.1
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhccccc-CCChHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHhhhhcChhh
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESF-KADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEPR 81 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~-~~~~~~~~~i~~~ll~~L~-d~~~~Vr~~A~~~l~~l~~~~~~~~ 81 (1167)
..|..+++.+.+.|++.++-|+..+++.|+++.. .++.=...-+++.|++.|. +.++++|..|+.+|+.++..-.+..
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 3478899999999999999999999999987431 1222223346899999997 5568999999999999986433221
Q ss_pred --HH--HHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhhccCC---ChhHHHHHHHHH
Q 001062 82 --VV--EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDM---NTEIRCECLDIL 153 (1167)
Q Consensus 82 --~~--~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~-~~i~p~Ll~~l~~~~~---~~~v~~~~~~~L 153 (1167)
+. ..++.|+..+.+++..+|+.++.||..++.+.+. ....+. ...+|.|+..+..++. ...+...+..++
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~--~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA--FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH--HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 11 3578899999999889999999999999875543 222222 2356777777765431 123455667777
Q ss_pred HHHHHHhccchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH--H--HHHHHHHHHHhhcCCCChHHHH
Q 001062 154 CDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL--L--AKATIEVVRNLRSKGAKPEMIR 228 (1167)
Q Consensus 154 ~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~--~--~~l~~~l~~~l~~~~~~~~~r~ 228 (1167)
+.+...-..... .....+++.+...+.++++.++..|+.+|+.++....+.. + ..+++.++..+.+++ ...+.
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~ 292 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE--LPIVT 292 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC--HHHHH
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC--hhhhh
Confidence 776654322221 3456788899999999999999999999999987554331 1 235777888887764 47888
Q ss_pred HHHHHHHHHHHHhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccH-HHHHHHHHHhhcc
Q 001062 229 TNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSY 306 (1167)
Q Consensus 229 ~~~~~l~~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l-~~ii~~~~~~l~~ 306 (1167)
.++.+++.++...+..-...+ ...+|.+...+.+ .++++|+.+.+++..+....+....... ..+++.+...+..
T Consensus 293 ~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~ 369 (510)
T 3ul1_B 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 369 (510)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC---CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC
Confidence 999999999765432211111 3456666666766 7889999999999999765443322222 1355666665541
Q ss_pred CCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcC-ChhhHHHH-HHHhhHHHhhhccCCh
Q 001062 307 DPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-PEMLSKLY-EEACPKLIDRFKEREE 384 (1167)
Q Consensus 307 dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~-~~~l~~~~-~~i~p~L~~~l~d~~~ 384 (1167)
.++++|+.|+.+|..+.... ++....+. ..+++.|++.++..+.
T Consensus 370 ----------------------------------~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 370 ----------------------------------ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp ----------------------------------SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred ----------------------------------CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH
Confidence 12589999999999887753 33332222 2367888888888889
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHH--HHHHHHHHHhccCChhhHHHHHHHHHHH
Q 001062 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVS--KIVKSINRQLREKSIKTKVGAFSVLREL 453 (1167)
Q Consensus 385 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~--~l~~~l~~~L~~~~~~~r~~~~~~l~~l 453 (1167)
.++..++.++..+++...... ....+...+. ..++.+..+...++..+++.+..++...
T Consensus 416 ~i~~~~L~aL~nil~~~~~~~----------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 416 KIIQVILDAISNIFQAAEKLG----------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT----------CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhcc----------chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999988887543110 0011121211 1234555555566777777777665544
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.44 E-value=4.2e-11 Score=144.11 Aligned_cols=399 Identities=13% Similarity=0.124 Sum_probs=269.6
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhccccc-CCChHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHhhhhcChhh
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESF-KADADLEVKLSNIVVQQLD-DVAGDVSGLAVKCLAPLVKKVSEPR 81 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~-~~~~~~~~~i~~~ll~~L~-d~~~~Vr~~A~~~l~~l~~~~~~~~ 81 (1167)
..+..+++.+.+.|++.++.|+..+++.++.+.. .++.-....+++.|++.|. +.++++|..|+.+|+.++..-.+..
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3577889999999999999999999999976432 1222334567899999996 6679999999999999986543321
Q ss_pred --H--HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhhccCC---ChhHHHHHHHHH
Q 001062 82 --V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDM---NTEIRCECLDIL 153 (1167)
Q Consensus 82 --~--~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~-~~i~p~Ll~~l~~~~~---~~~v~~~~~~~L 153 (1167)
+ ...++.|+..+.+++..+++.|+.||..++.+-+. ....+. ...+|.|+..|..++. ...+...+..++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~--~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA--FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH--HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 1 13578888888888889999999999998865433 222222 2357788887765431 123455666777
Q ss_pred HHHHHHhccchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH----HHHHHHHHHHHhhcCCCChHHHH
Q 001062 154 CDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL----LAKATIEVVRNLRSKGAKPEMIR 228 (1167)
Q Consensus 154 ~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~----~~~l~~~l~~~l~~~~~~~~~r~ 228 (1167)
+.++..-..... .....+++.|...+.++++.++..|+.||+.++....+.. -..+++.++..+.+++ ...+.
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~v~~ 311 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE--LPIVT 311 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC--HHHHH
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC--hhHHH
Confidence 776654332221 3456788899999999999999999999999987654431 1235777888887764 47888
Q ss_pred HHHHHHHHHHHHhhhhhhc-chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHH-HHHHHHHHhhcc
Q 001062 229 TNIQMVGALSRAVGYRFGP-HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCD-EILHLTLEYLSY 306 (1167)
Q Consensus 229 ~~~~~l~~l~~~~~~~~~p-~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~-~ii~~~~~~l~~ 306 (1167)
.++.+++.++...+..-.. .-...+|.+...+.+ .++++|..|.+++..+....+........ .+++.+...+..
T Consensus 312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC---CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence 9999999998654322111 113567788888887 78899999999999998754433222222 355555555541
Q ss_pred CCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcC-ChhhHHHH-HHHhhHHHhhhccCCh
Q 001062 307 DPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSR-PEMLSKLY-EEACPKLIDRFKEREE 384 (1167)
Q Consensus 307 dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~-~~~l~~~~-~~i~p~L~~~l~d~~~ 384 (1167)
.++++|+.|+.+|+.+.... ++....+. ..++|.|++.++..+.
T Consensus 389 ----------------------------------~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 389 ----------------------------------ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp ----------------------------------SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred ----------------------------------CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH
Confidence 12589999999999987653 33333222 2367888888888889
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHH--HHHHHHHHhccCChhhHHHHHHHHHHH
Q 001062 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSK--IVKSINRQLREKSIKTKVGAFSVLREL 453 (1167)
Q Consensus 385 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~--l~~~l~~~L~~~~~~~r~~~~~~l~~l 453 (1167)
.++..++.++..+++...... ....+...+.. .++.|..+...++..++..|..++...
T Consensus 435 ~i~~~~L~aL~nil~~~~~~~----------~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 435 KIIQVILDAISNIFQAAEKLG----------ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT----------CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhcc----------ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999988886542110 00111111111 234444455566777777777666554
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.37 E-value=1.2e-09 Score=132.75 Aligned_cols=453 Identities=10% Similarity=0.095 Sum_probs=285.2
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh--hcCCCChHHHHHHHHHHHHHHHHhhhhhh
Q 001062 169 ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNL--RSKGAKPEMIRTNIQMVGALSRAVGYRFG 246 (1167)
Q Consensus 169 ~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l--~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 246 (1167)
...+..+.+.++++++.+|..|+.+++.+. .+++.+.+++.+.+.+ .+. +.-+|+.|+.++..+.+..|+.+.
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---~~e~~~~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~~p~~~~ 184 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVG---SREMAEAFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRTSPDLVP 184 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---CHHHHHHHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhChhhcC
Confidence 344566777888999999999999999885 4668888999999998 554 458999999999999998876654
Q ss_pred cchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccC----CCCCCCCCCCCcccc
Q 001062 247 PHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYD----PNFTDNMEEDSDDEA 322 (1167)
Q Consensus 247 p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~d----p~~~~~~~~d~~~~~ 322 (1167)
+ +..++.+.+.+.+ .++.++.+|+.++..++..-|..+.++++.++..+.+++... +.|.+
T Consensus 185 ~--~~~~~~l~~lL~d---~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~---------- 249 (621)
T 2vgl_A 185 M--GDWTSRVVHLLND---QHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTY---------- 249 (621)
T ss_dssp C--CSCHHHHHHHTTC---SCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEE----------
T ss_pred c--hhHHHHHHHHhCC---CCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhh----------
Confidence 2 4678888888876 788999999999999998888878889999888887776421 11100
Q ss_pred cccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhh---------ccCCh--hHHHHHH
Q 001062 323 YEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF---------KEREE--NVKMDVF 391 (1167)
Q Consensus 323 ~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l---------~d~~~--~vr~~~~ 391 (1167)
.. -...|- +-...+.+..+...........+..+++.+++.. +.++. .|..++.
T Consensus 250 -------------~~-~~~~w~-qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~ 314 (621)
T 2vgl_A 250 -------------YF-VPAPWL-SVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAI 314 (621)
T ss_dssp -------------TT-EESHHH-HHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHH
T ss_pred -------------cC-CCCchH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHH
Confidence 00 001352 2222223222211111112222223333333322 12222 5555555
Q ss_pred HHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHH
Q 001062 392 NTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPG 471 (1167)
Q Consensus 392 ~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~ 471 (1167)
.++..+ ... .+.....++.+.+.+.++++.+|-.++..+..++...|. .+.+....+.
T Consensus 315 ~~i~~l---~~~-----------------~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~ 372 (621)
T 2vgl_A 315 SLIIHH---DSE-----------------PNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIET 372 (621)
T ss_dssp HHHHHH---CCC-----------------HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHH
T ss_pred HHHHhc---CCc-----------------HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHH
Confidence 554443 110 234455667777888888889999999999999876652 1234555666
Q ss_pred HHHhcc-cCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccC
Q 001062 472 IEKSLN-DKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLG 550 (1167)
Q Consensus 472 l~~~l~-d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~ 550 (1167)
++.++. |. +..+|..++.++..++.. ..+..++..+...+.+.+..++.+++..++.++..+.+
T Consensus 373 i~~~L~~d~--d~~Ir~~aL~lL~~l~~~-------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~------ 437 (621)
T 2vgl_A 373 VINALKTER--DVSVRQRAVDLLYAMCDR-------SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAV------ 437 (621)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCS------
T ss_pred HHHHhccCC--CHhHHHHHHHHHHHHcCh-------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC------
Confidence 777777 66 467999999998888642 24678888888888877888999999999998876543
Q ss_pred CCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhH----HHHHHHHH
Q 001062 551 FDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRL----TAVKAFAV 626 (1167)
Q Consensus 551 ~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~----~a~~al~~ 626 (1167)
++.-|++.++..+-..- . .+.+.++..+..++.... .+ .......+++.+.+...+. .++..+|+
T Consensus 438 -~~~~~v~~Ll~ll~~~~--~----~v~~ev~~~l~~ii~~~~-~~---~~~~~~~l~~~l~~~~~~~~li~~~~wilGE 506 (621)
T 2vgl_A 438 -DYTWYVDTILNLIRIAG--D----YVSEEVWYRVIQIVINRD-DV---QGYAAKTVFEALQAPACHENLVKVGGYILGE 506 (621)
T ss_dssp -STHHHHHHHHHHHHHHG--G----GSCSHHHHHHHHHHGGGC-SC---HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhhc--c----cchHHHHHHHHHHHhCCh-hH---HHHHHHHHHHHHcCccchHHHHHHHHHHhcc
Confidence 34455665555442221 1 133444556666654422 22 2334555666665544333 44588887
Q ss_pred HhcCCCC-CchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhh-hcC--CCchhhHH
Q 001062 627 IAASPLH-IDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELST-LIS--DSDLHMTA 702 (1167)
Q Consensus 627 i~~~~~~-~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~-~l~--~~d~~~~~ 702 (1167)
-+..... ....| ..++..+...+...+..+|...+.++..++...++ ..+.+..+.. ... +.|..+++
T Consensus 507 y~~~~~~~~~~~p--~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~------~~~~i~~~l~~~~~~~~~d~evrd 578 (621)
T 2vgl_A 507 FGNLIAGDPRSSP--LIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE------VKATIQDVLRSDSQLKNADVELQQ 578 (621)
T ss_dssp HTHHHHSSTTSCH--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHSSHHHHSCSSHHHHH
T ss_pred hHHHhcccCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH------HHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6521000 00011 13344444444567888999999999999876642 2333343333 334 78899999
Q ss_pred HHHHHHHHHh
Q 001062 703 LALELCCTLM 712 (1167)
Q Consensus 703 ~al~~l~~l~ 712 (1167)
-|...+.-+.
T Consensus 579 RA~~y~~Ll~ 588 (621)
T 2vgl_A 579 RAVEYLRLST 588 (621)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9988877764
No 51
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.37 E-value=5.6e-12 Score=134.31 Aligned_cols=199 Identities=11% Similarity=0.135 Sum_probs=164.0
Q ss_pred CCcchHHHHHHHHHHHH-HHhcCChhh--HHHHHHHhhHHHhhh-ccCChhHHHHHHHHHHHHHHhhC-CCCCCccCCCC
Q 001062 339 EDASWKVRRAAAKCLAA-LIVSRPEML--SKLYEEACPKLIDRF-KEREENVKMDVFNTFIELVRQTG-NVTKGQIDNNE 413 (1167)
Q Consensus 339 dd~sw~vR~aA~~~l~~-li~~~~~~l--~~~~~~i~p~L~~~l-~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~~~~~ 413 (1167)
.+..|+-|++|...|.. +++..|+.. ..-|..++..|.+.+ +|.+..||..++.+++.+.+..+ +
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~---------- 95 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP---------- 95 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT----------
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc----------
Confidence 35679999999999999 987766543 233456677777788 79999999999999999997665 3
Q ss_pred CchHHHHH-HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhH-hhhhhhHHHHHHhcccCCCCchHHHHHHH
Q 001062 414 LNPRWLLK-QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLA-DHIGSLIPGIEKSLNDKSSTSNLKIEALT 491 (1167)
Q Consensus 414 ~~p~~~l~-~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~-~~l~~l~~~l~~~l~d~~~~~~~~~~al~ 491 (1167)
.+. ++...+++.+...++++...++..+..++..+++..++... +|++.+++.+...|..+ ++.+|.+++.
T Consensus 96 -----~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~ 168 (249)
T 2qk1_A 96 -----GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQ 168 (249)
T ss_dssp -----TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHH
T ss_pred -----cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHH
Confidence 345 78889999999999999999999999999999987754221 23889999999999876 4689999999
Q ss_pred HHHHHhccCCC--Cchhhhh-HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHH
Q 001062 492 FTRLVLSSHSP--PVFHPYI-KALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPI 560 (1167)
Q Consensus 492 ~l~~l~~~~~~--~~~~~~l-~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l 560 (1167)
+++.++...+. ..|.+|+ +.++|.+.+++.|....||..|..+++.+++.+|.. .+.||++.+
T Consensus 169 ~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~------~~~p~l~~L 234 (249)
T 2qk1_A 169 LFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN------TFVKTLEHL 234 (249)
T ss_dssp HHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG------GGHHHHHHS
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH------HHHHHHHHH
Confidence 99999987653 4678899 999999999999999999999999999999998762 366666554
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.37 E-value=8.1e-12 Score=133.07 Aligned_cols=202 Identities=15% Similarity=0.153 Sum_probs=167.3
Q ss_pred HHHHHhcCCChhHHhHhHHHHHH-HhcccccCCC--hHHHHHHHHHHHHhc-CCCChhHHHHHHHHHHHhhhhcC-h---
Q 001062 8 AILEKITGKDKDFRYMATSDLLN-ELNKESFKAD--ADLEVKLSNIVVQQL-DDVAGDVSGLAVKCLAPLVKKVS-E--- 79 (1167)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~-~l~~~~~~~~--~~~~~~i~~~ll~~L-~d~~~~Vr~~A~~~l~~l~~~~~-~--- 79 (1167)
.+.+++.+.+...|..|+..|.. .++.. .++. ......+++.|.+.+ .|+|..||..|++|++.|+..++ +
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 35678899999999999999999 87642 2222 223357899999999 79999999999999999998776 2
Q ss_pred -hhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHH
Q 001062 80 -PRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLH 158 (1167)
Q Consensus 80 -~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~ 158 (1167)
.+...+++.++..+.+.+..+++.+..||.++++.+++. ....+.+.+++.|+..|.++ +|.+|..++.+|+.++.
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~-~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL-ASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT-CTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc-ccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH
Confidence 455678999999998888889999999999999988542 11112567888899888876 68999999999999999
Q ss_pred Hhcc---chhHHH-HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 001062 159 KFGN---LMSNDH-ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEV 213 (1167)
Q Consensus 159 ~~g~---~l~~~~-~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l 213 (1167)
..+. .+.++. +.+++.+.+.+.++++.||+.|..|++.+...+|++.+..+++.+
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9884 577899 999999999999999999999999999999999987666665554
No 53
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.33 E-value=4.1e-10 Score=134.57 Aligned_cols=398 Identities=13% Similarity=0.087 Sum_probs=247.8
Q ss_pred HHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhH
Q 001062 87 DKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN 166 (1167)
Q Consensus 87 ~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~ 166 (1167)
+.|.+.+.+++.+.+-.|..+++.+.+.-.......-+-.-++|.|++.|...+ ++.++..|..+|+.++......-..
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~-~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 344444555555556666666666654221111211122347899999997654 6789999999999987543222111
Q ss_pred HH-HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HH-HHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHHH
Q 001062 167 DH-ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LL-AKATIEVVRNLRSKGAK---PEMIRTNIQMVGALS 238 (1167)
Q Consensus 167 ~~-~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~---~~~r~~~~~~l~~l~ 238 (1167)
.. ...++.|+..|.+++..+|+.|+.||+.++...+.. .. ...++.++..+..++.. ....+.+..++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 11 135788888999999999999999999998654331 11 12466777777654321 234556777777777
Q ss_pred HHhhh-hhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccccc-HHHHHHHHHHhhccCCCCCCCCCC
Q 001062 239 RAVGY-RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSY-CDEILHLTLEYLSYDPNFTDNMEE 316 (1167)
Q Consensus 239 ~~~~~-~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~-l~~ii~~~~~~l~~dp~~~~~~~~ 316 (1167)
+.... .-......++|.+...+.+ ++++++..+.+++..+....+...... -..+++.+.+++..
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~---~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---------- 285 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHH---NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA---------- 285 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC----------
T ss_pred hcccchhHHHHHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC----------
Confidence 64321 1112346789999999888 789999999999998875433211110 11234444444431
Q ss_pred CCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHH-HHHhhHHHhhhccCChhHHHHHHHHHH
Q 001062 317 DSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKEREENVKMDVFNTFI 395 (1167)
Q Consensus 317 d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~-~~i~p~L~~~l~d~~~~vr~~~~~~l~ 395 (1167)
.++.++..|+++++.+....++....+. ..++|.|+..+++.++.+|..+..++.
T Consensus 286 ------------------------~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 286 ------------------------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp ------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred ------------------------CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1358999999999998775543222222 235677777788888999999988888
Q ss_pred HHHHhhCCCCCCccCCCCCchHHHHHHHH-HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh--hhhHHHH
Q 001062 396 ELVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGI 472 (1167)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~p~~~l~~~~-~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~l~~~l 472 (1167)
.+.... + ......+ ..+++.+...+.+.+.++|..+..+|..++.........++ ...++.+
T Consensus 342 nl~a~~--------------~-~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L 406 (510)
T 3ul1_B 342 NITAGR--------------Q-DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPL 406 (510)
T ss_dssp HHTTSC--------------H-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHH
T ss_pred HHHcCc--------------H-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHH
Confidence 775321 1 1111111 24667778888888899999999999998865433222222 3567888
Q ss_pred HHhcccCCCCchHHHHHHHHHHHHhccCCC----CchhhhhHh--hHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001062 473 EKSLNDKSSTSNLKIEALTFTRLVLSSHSP----PVFHPYIKA--LSSPVLAAVGERYYKVTAEALRVCGELV 539 (1167)
Q Consensus 473 ~~~l~d~~~~~~~~~~al~~l~~l~~~~~~----~~~~~~l~~--ll~~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1167)
...|... +..+...++..+..++..... +.+...+.. .+..|.....+++..|...|+..+..++
T Consensus 407 ~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 407 MNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 8888765 467888888888888753211 111112211 2333433334667788888888877665
No 54
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.31 E-value=8.5e-10 Score=132.67 Aligned_cols=399 Identities=13% Similarity=0.084 Sum_probs=251.4
Q ss_pred HHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh
Q 001062 86 TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS 165 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~ 165 (1167)
++.+.+.+.+++.+.+-.+..+++.++..-.......-+-..++|.|++.|...+ ++.++..|..+|..++........
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~-~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4445555566666666667777777654322211222233468899999987643 688999999999998754332211
Q ss_pred -HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HHH-HHHHHHHHHhhcCCC---ChHHHHHHHHHHHHH
Q 001062 166 -NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLA-KATIEVVRNLRSKGA---KPEMIRTNIQMVGAL 237 (1167)
Q Consensus 166 -~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~-~l~~~l~~~l~~~~~---~~~~r~~~~~~l~~l 237 (1167)
-.....++.|+..+.+++..+|..|+.||+.++...+.. +.. ..++.++..+..++. .....+.+..++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 112235788888899999999999999999998654321 111 246677777765432 123455677777777
Q ss_pred HHHhhh-hhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccccc-HHHHHHHHHHhhccCCCCCCCCC
Q 001062 238 SRAVGY-RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSY-CDEILHLTLEYLSYDPNFTDNME 315 (1167)
Q Consensus 238 ~~~~~~-~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~-l~~ii~~~~~~l~~dp~~~~~~~ 315 (1167)
++.... .-......++|.+...+.+ ++++++..+++++..+....+...... -..+++.+.+++.+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~---~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~--------- 304 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHH---NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--------- 304 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC---------
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcC---CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC---------
Confidence 764321 1112346789999999988 889999999999998886543211111 11234444444431
Q ss_pred CCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHH-HHHHhhHHHhhhccCChhHHHHHHHHH
Q 001062 316 EDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKL-YEEACPKLIDRFKEREENVKMDVFNTF 394 (1167)
Q Consensus 316 ~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~-~~~i~p~L~~~l~d~~~~vr~~~~~~l 394 (1167)
.++.++..|+.+++.++...++.-..+ -..++|.|+..+++.++.+|..+..++
T Consensus 305 -------------------------~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 305 -------------------------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359 (529)
T ss_dssp -------------------------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred -------------------------CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 135899999999999886554322222 234678888888888999999999988
Q ss_pred HHHHHhhCCCCCCccCCCCCchHHHHHHHH-HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh--hhhHHH
Q 001062 395 IELVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPG 471 (1167)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~-~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~l~~~ 471 (1167)
.-+..... ......+ ..+++.+...+.+.+.++|..+..+|..++.........++ ..+++.
T Consensus 360 ~nl~~~~~---------------~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~ 424 (529)
T 3tpo_A 360 SNITAGRQ---------------DQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEP 424 (529)
T ss_dssp HHHHTSCH---------------HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred HHHhcccH---------------HHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHH
Confidence 87764211 1111111 23667777888888899999999999988765432222222 246888
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHhccCCC-Cchhh---hhHh--hHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 001062 472 IEKSLNDKSSTSNLKIEALTFTRLVLSSHSP-PVFHP---YIKA--LSSPVLAAVGERYYKVTAEALRVCGELV 539 (1167)
Q Consensus 472 l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~-~~~~~---~l~~--ll~~l~~~l~d~~~~v~~~al~~l~~l~ 539 (1167)
++..|... +..+...++.++..++..... ....+ ++.. .+..|.....+++..|...|+..+..++
T Consensus 425 L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 425 LMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 88888765 467888888888887753110 01111 1111 2333333334667788888888877764
No 55
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.27 E-value=6.8e-07 Score=113.30 Aligned_cols=542 Identities=12% Similarity=0.115 Sum_probs=276.5
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHH
Q 001062 46 KLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH 125 (1167)
Q Consensus 46 ~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~ 125 (1167)
..++.++..+.+|+++.|+.|.+.|..+-. .++.|..... ++. .+.+.++|-.++..|+..+..-
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~--sp~aw~~~~~-iL~--~s~~~~vR~fAa~~L~~~I~~~---------- 92 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKE--HPDAWTRVDT-ILE--FSQNMNTKYYGLQILENVIKTR---------- 92 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSC--CSCHHHHHTC-C-----CCSHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHc--CchHHHHHHH-Hhc--CCCCHHHHHHHHHHHHHHHHhh----------
Confidence 556777788888999999999988876532 2233432221 211 1233445555555555444310
Q ss_pred HHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcC-----ChHHHHHHHHHHHHHHHhh
Q 001062 126 TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSA-----NQASVRKKSVSCIASLASS 200 (1167)
Q Consensus 126 ~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~-----~~~~vrk~a~~~l~~l~~~ 200 (1167)
...+...+ ...+|. .+++.+.....+ .++.++.+-+.+++.++..
T Consensus 93 -------W~~L~~e~-~~~LR~----------------------~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~ 142 (1073)
T 3gjx_A 93 -------WKILPRNQ-CEGIKK----------------------YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ 142 (1073)
T ss_dssp -------GGGSCHHH-HHHHHH----------------------HHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred -------hhhCCHHH-HHHHHH----------------------HHHHHHHHHccCccccccchHHHHHHHHHHHHHHHH
Confidence 00010000 011222 222222221111 2356778888899998887
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh----------------hhhhcchhhhHHHHHHHhhhcC
Q 001062 201 LSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG----------------YRFGPHLGDTVPVLIDYCTSAS 264 (1167)
Q Consensus 201 ~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~----------------~~~~p~l~~lvp~l~~~l~~~~ 264 (1167)
.-++.|..+++.+++.++.+ ...+..++..+..+.+... +.+...++.+++++..+++..
T Consensus 143 ~~P~~Wp~fi~dLv~~~~~~---~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~- 218 (1073)
T 3gjx_A 143 EWPKHWPTFISDIVGASRTS---ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENS- 218 (1073)
T ss_dssp HTTTTCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred hChhhccHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 54444666777777766542 2456677777777776521 135556777888887777653
Q ss_pred CCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHH-HHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcch
Q 001062 265 ENDEELREYSLQALESFLLRCPRDISSYCDEILHLT-LEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW 343 (1167)
Q Consensus 265 e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~-~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw 343 (1167)
.++++...+++++..++...|-+.- .-..+++.+ .+++. +-
T Consensus 219 -~~~~lv~~~L~~L~~~~sWI~i~~i-~~~~ll~~L~~~~L~------------------------------------~~ 260 (1073)
T 3gjx_A 219 -QNAPLVHATLETLLRFLNWIPLGYI-FETKLISTLIYKFLN------------------------------------VP 260 (1073)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCTHHH-HSSSHHHHHHHHTSS------------------------------------SH
T ss_pred -CCHHHHHHHHHHHHHHHHhcCHHHh-ccchHHHHHHHHhcC------------------------------------Ch
Confidence 5678889999999999988764310 002344544 34432 01
Q ss_pred HHHHHHHHHHHHHHhcC-C---hhhHHHHHHHhhHH----------Hhhh--ccCCh-hHHHHHHHHHHHHHHhhCCCCC
Q 001062 344 KVRRAAAKCLAALIVSR-P---EMLSKLYEEACPKL----------IDRF--KEREE-NVKMDVFNTFIELVRQTGNVTK 406 (1167)
Q Consensus 344 ~vR~aA~~~l~~li~~~-~---~~l~~~~~~i~p~L----------~~~l--~d~~~-~vr~~~~~~l~~l~~~~~~~~~ 406 (1167)
++|.+|+.||..++... + +.+..+|+.++..+ .+.+ .+.++ ..-......+.++.+.-....
T Consensus 261 ~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lI- 339 (1073)
T 3gjx_A 261 MFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLL- 339 (1073)
T ss_dssp HHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 78999999999998753 2 23334454443221 1111 11122 222233333443333211000
Q ss_pred CccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHH----HHHHHhcC------------------ch---h
Q 001062 407 GQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVL----RELVVVLP------------------DC---L 461 (1167)
Q Consensus 407 ~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l----~~l~~~~~------------------~~---l 461 (1167)
+..| .+.+.+-..+..+..+-.-++..+-..++.+= ..|....+ .. +
T Consensus 340 ------e~~p--~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y 411 (1073)
T 3gjx_A 340 ------EKRL--NLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLY 411 (1073)
T ss_dssp ------HHCG--GGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTT
T ss_pred ------hcCc--cchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHH
Confidence 0000 01122222333344443333444444554442 23332211 11 3
Q ss_pred HhhhhhhHHHHHHhcccCCC--------CchHH--------HHHHHHHHHHhc---cCCCCchhhhhHhhHHHHHHHhc-
Q 001062 462 ADHIGSLIPGIEKSLNDKSS--------TSNLK--------IEALTFTRLVLS---SHSPPVFHPYIKALSSPVLAAVG- 521 (1167)
Q Consensus 462 ~~~l~~l~~~l~~~l~d~~~--------~~~~~--------~~al~~l~~l~~---~~~~~~~~~~l~~ll~~l~~~l~- 521 (1167)
.+.+..+...+..-+..+.. ...+| ++....++..+. ..++ ...+..+++.+.+.++
T Consensus 412 ~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~---~~~~~i~~~~l~~~~~~ 488 (1073)
T 3gjx_A 412 LTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDY---VDTEIIMTKKLQNQVNG 488 (1073)
T ss_dssp HHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHhcC
Confidence 44555666666555552210 00000 111112222111 1111 1223445555555554
Q ss_pred -CCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCC-CHH--HHHHHHHHHHHHHHhcCcccc
Q 001062 522 -ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQ-DQE--VKECAISCMGLVISTFGDNLG 597 (1167)
Q Consensus 522 -d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~-~~~--vr~~Ai~alg~l~~~~g~~l~ 597 (1167)
..++.....++.++|.+...+.+. .-.+++..+++.++.....+.. +.+ ++....+.+|+.. +++.
T Consensus 489 ~~~sW~~lea~~~aigaIag~~~~~------~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~----~wl~ 558 (1073)
T 3gjx_A 489 TEWSWKNLNTLCWAIGSISGAMHEE------DEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP----RFLR 558 (1073)
T ss_dssp CCCCHHHHHHHHHHHHHTTTSSCHH------HHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH----HHHH
T ss_pred CCCCHHHHhHHHHHHHHHHCcCCcc------cccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhH----HHHH
Confidence 346888899999999997655431 1246888999988877653321 122 2222224444432 2221
Q ss_pred cchhhhHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCC
Q 001062 598 AELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKI 677 (1167)
Q Consensus 598 ~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~ 677 (1167)
. . .++++.++..|..++...+..++.+|..++..|++.++..+
T Consensus 559 ~----------------------------------h---~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~l 601 (1073)
T 3gjx_A 559 A----------------------------------H---WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHF 601 (1073)
T ss_dssp H----------------------------------C---HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGG
T ss_pred h----------------------------------C---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 45667777777777776777888888888888888776543
Q ss_pred C-------hhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCchh--hhhhhchHHHHHHH
Q 001062 678 G-------ASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVG--LAVRNKVLPQALAL 736 (1167)
Q Consensus 678 ~-------~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~--~~~~~~~l~~l~~l 736 (1167)
. .+.++++++.+.....+=+..-....+++++.++.. .|... ..+...+++....-
T Consensus 602 v~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~---~p~~~~~~~~i~~Lm~~~~~~ 666 (1073)
T 3gjx_A 602 VQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA---QTDQTVQEHLIEKYMLLPNQV 666 (1073)
T ss_dssp TSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT---CCCHHHHHHHHHHHTHHHHHH
T ss_pred hhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHHHH
Confidence 1 123444544444433333344455567888988887 56422 33444455444443
No 56
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.16 E-value=6.7e-06 Score=100.44 Aligned_cols=354 Identities=15% Similarity=0.139 Sum_probs=207.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcC---CCchhhHHHHHHHHHHHhhcccCCCchhhh
Q 001062 648 TAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLIS---DSDLHMTALALELCCTLMADKRSSPNVGLA 724 (1167)
Q Consensus 648 ~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~d~~~~~~al~~l~~l~~~~~~~p~~~~~ 724 (1167)
.+++.++....+-.|..+|+.|-.... +.-+..+.+.+. .++..++.-++-.+|.+... ..
T Consensus 364 ~~Wl~k~~~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag---~~----- 427 (963)
T 4ady_A 364 LPWLGKAQNWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAG---FG----- 427 (963)
T ss_dssp HHHHHHCCTHHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTT---TT-----
T ss_pred hhhhhccchHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCC---Cc-----
Confidence 356777666667888888887754222 223555666664 45667777788888876543 11
Q ss_pred hhhchHHHHHHHhhhccchhhhHHHHHHHHHHHHhccCCChHHHHHHHhhcCCCCCCCcchhhhhhHHHHHHHHHHHhhc
Q 001062 725 VRNKVLPQALALIKSSLLQGQALVALQSFFAALVYSANTSFDTLLDSLLSSAKPSPQSGGVAKQAMYSIAQCVAVLCLAA 804 (1167)
Q Consensus 725 ~~~~~l~~l~~ll~~~~l~~~~l~~~~~~~~~l~~~~~~~~~~ll~~L~~~~~~~~~~~~~~~~a~~~~a~~i~~~~~~~ 804 (1167)
..++..|...+.++ .. .+++.. ........+..+|.+..++
T Consensus 428 --~~~~~lL~~~L~~~--------------------~~---------------~~~~~~--~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 428 --RDTTDYLKNIIVEN--------------------SG---------------TSGDED--VDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp --HHHHHHHHHHHHHH--------------------SS---------------CCSCHH--HHHHHHHHHHHHHHHSTTC
T ss_pred --HHHHHHHHHHHcCc--------------------cc---------------cccccc--cHHHHHHHHHHHHHHhcCC
Confidence 11122222111110 00 000000 0011112333445554444
Q ss_pred CCcchhHHHHHHHHHhhcCCCCchHHHHHHHHHHhhh--hccCCCCCccchHHHHHHhc-CCChhhHHHHHHHHHHhhhh
Q 001062 805 GDQKCSSTVKMLTDILKDDSSTNSAKQHLALLCLGEI--GRRKDLSSHEHIENVIIESF-QSPFEEIKSAASYALGNIAV 881 (1167)
Q Consensus 805 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei--~~~~~~~~~~~~~~~l~~~l-~~~~e~vr~aaa~aLG~l~~ 881 (1167)
+. ..+.+.+...+.+. +...+..+..+||-+ |... ++....++..+ ++.++++|+.++.+||.+..
T Consensus 469 ~~---eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn-----~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 469 AN---IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGK-----PEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp CC---HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred CC---HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 32 35666666666542 233455677778865 3321 34555555544 45689999999999999888
Q ss_pred cCcccchHHHHHHhhc--ccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhccc
Q 001062 882 GNLSKFLPFILDQIDN--QQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIAL 959 (1167)
Q Consensus 882 ~~~~~~lp~l~~~l~~--~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~ 959 (1167)
++. ...+.+++.+.. ++-.||....+++- ...+.. . ...++.++..+.. +.++++|+.|+.+||.+..
T Consensus 538 g~~-e~~~~li~~L~~~~dp~vRygaa~algl--AyaGTG---n-~~aIq~LL~~~~~---d~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 538 GRQ-ELADDLITKMLASDESLLRYGGAFTIAL--AYAGTG---N-NSAVKRLLHVAVS---DSNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp TCG-GGGHHHHHHHHHCSCHHHHHHHHHHHHH--HTTTSC---C-HHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTS
T ss_pred CCh-HHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcCCC---C-HHHHHHHHHHhcc---CCcHHHHHHHHHHHHhhcc
Confidence 765 567778887764 55678877666642 233332 1 1123334443333 4567899999999999999
Q ss_pred cCcccchHHHHHh-hcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCch
Q 001062 960 IEPAKLVPALKVR-TTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPN 1038 (1167)
Q Consensus 960 ~~~~~~lp~l~~~-~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~~~p~ 1038 (1167)
.+++. .|.+.+. ..+.++.+|+-+.-++.-+....+ ....+..+-....|+|..||+.|+..|+.+..-.++
T Consensus 608 g~~e~-v~rlv~~L~~~~d~~VR~gAalALGli~aGn~------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 608 RDYTT-VPRIVQLLSKSHNAHVRCGTAFALGIACAGKG------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp SSCSS-HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 88865 5666664 456789999999999985443322 123445445567899999999999999998766666
Q ss_pred hhhchhhhhhHHHHHhhhccc--c---------------ceeeeeccCceeecccChhHHHHHHH
Q 001062 1039 LIKGLLPELLPLLYDQTIVKK--E---------------LIRTVDLGPFKHTVDDGLELRKAAFE 1086 (1167)
Q Consensus 1039 ~~~~~l~~llp~L~~~~~~~~--~---------------lir~v~~gp~k~~~d~gle~Rk~a~~ 1086 (1167)
...|++..++-.|.+-...|. . =.|.+.++||. -|.|.--++++.+
T Consensus 681 a~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis~~~--s~~~~~~~~a~~G 743 (963)
T 4ady_A 681 KLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQLEN--ADTGTLDTKSVVG 743 (963)
T ss_dssp TTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEECSBC--TTTCCBCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEEeee--ccCCCCCHHHHHH
Confidence 655666666665554433211 1 14667888873 2556544445544
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.12 E-value=3e-09 Score=116.49 Aligned_cols=252 Identities=11% Similarity=0.064 Sum_probs=175.8
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHH
Q 001062 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHT 126 (1167)
Q Consensus 47 i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~ 126 (1167)
.++.++..|.|+++.||..|+.+|+.+.. +..++.|...+.+++..+|..++.+|..+... . . ...
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~-~----~~~ 89 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--K-K----CED 89 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--T-T----THH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--c-c----cch
Confidence 46788999999999999999999998752 35677777788888888899999888764311 1 1 123
Q ss_pred HHHHHHHH-hhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHH
Q 001062 127 SLTPQLTK-GITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDL 205 (1167)
Q Consensus 127 ~i~p~Ll~-~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~ 205 (1167)
.+++.|.+ .+.++ ++.||..++.+|+.+....+ .+.+..++.+...++++++.||..|+.+++.++..
T Consensus 90 ~l~~~L~~~~~~d~--~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~----- 158 (280)
T 1oyz_A 90 NVFNILNNMALNDK--SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK----- 158 (280)
T ss_dssp HHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH-----
Confidence 35555543 23333 68999999999998865443 23566788888889999999999999999987641
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC
Q 001062 206 LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1167)
Q Consensus 206 ~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~ 285 (1167)
..++.++..+++++ ..+|..++.+++.+. +.-+.++|.+...+.+ +++++|..+.++++.+-
T Consensus 159 --~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~--------~~~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~--- 220 (280)
T 1oyz_A 159 --ATIPLLINLLKDPN--GDVRNWAAFAININK--------YDNSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRK--- 220 (280)
T ss_dssp --CCHHHHHHHHTCSS--HHHHHHHHHHHHHHT--------CCCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHTT---
T ss_pred --HHHHHHHHHHcCCC--HHHHHHHHHHHHhhc--------cCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhC---
Confidence 24666777777764 478999999987763 2235678888888877 78999999999887653
Q ss_pred CccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhH
Q 001062 286 PRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLS 365 (1167)
Q Consensus 286 ~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~ 365 (1167)
. +..++.+.+.++ | |.||+.|+.+|+.+-.
T Consensus 221 ~-------~~~~~~L~~~l~-d-----------------------------------~~vr~~a~~aL~~i~~------- 250 (280)
T 1oyz_A 221 D-------KRVLSVLCDELK-K-----------------------------------NTVYDDIIEAAGELGD------- 250 (280)
T ss_dssp C-------GGGHHHHHHHHT-S-----------------------------------SSCCHHHHHHHHHHCC-------
T ss_pred C-------HhhHHHHHHHhc-C-----------------------------------ccHHHHHHHHHHhcCc-------
Confidence 1 234444444443 0 1278899999987632
Q ss_pred HHHHHHhhHHHhhhcc-CChhHHHHHHHHH
Q 001062 366 KLYEEACPKLIDRFKE-REENVKMDVFNTF 394 (1167)
Q Consensus 366 ~~~~~i~p~L~~~l~d-~~~~vr~~~~~~l 394 (1167)
..++|.|.+.+++ .++.++..++..+
T Consensus 251 ---~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 251 ---KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp ---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ---hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 2456677666643 4455655555443
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.10 E-value=3.1e-09 Score=131.38 Aligned_cols=267 Identities=15% Similarity=0.246 Sum_probs=211.4
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh-----h
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-----P 80 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~-----~ 80 (1167)
+..+++++...+++-|..|...+.+.++......+-. ..+++.+.+.+.|...- ..|+..++.++.+.+. .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~ 91 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP 91 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc
Confidence 4556777777777888888899999887542222212 37999999999987555 8899999999865532 3
Q ss_pred hHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHh
Q 001062 81 RVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKF 160 (1167)
Q Consensus 81 ~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~ 160 (1167)
.+..+++.++....++...+|..|..|+.+++..+++. .++.++|.|+..|.... .|..+..+++++..+++..
T Consensus 92 ~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 92 YIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV-----AIKALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG-----GHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHh
Confidence 34455788888888888889999999999999999985 23788999999996653 6999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCC------------------
Q 001062 161 GNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGA------------------ 222 (1167)
Q Consensus 161 g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~------------------ 222 (1167)
+.++....++++|.+..++-+.++.|++.|..++..++..+++.-+...+|.++..+.+|..
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~ 245 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVT 245 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCC
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeec
Confidence 88888999999999999999999999999999999999888776444444444444433321
Q ss_pred ------------------ChHHHHHHHHHHHHHHHH--hhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 001062 223 ------------------KPEMIRTNIQMVGALSRA--VGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFL 282 (1167)
Q Consensus 223 ------------------~~~~r~~~~~~l~~l~~~--~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~ 282 (1167)
....++.+.-.+..+++- .|....||+|.++|-+-...... .++|+|+.|-+++..+.
T Consensus 246 ~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~--~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 246 PATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATI--ADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTC--CSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhcc--CCHHHHHHHHHHHHHHH
Confidence 135666777888889886 57789999999999999877665 78999999999988886
Q ss_pred Hh
Q 001062 283 LR 284 (1167)
Q Consensus 283 ~~ 284 (1167)
..
T Consensus 324 ~~ 325 (986)
T 2iw3_A 324 RV 325 (986)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.09 E-value=3.5e-08 Score=122.13 Aligned_cols=305 Identities=13% Similarity=0.195 Sum_probs=213.9
Q ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhc-CHH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh--hhhcchh
Q 001062 175 LLPQLSANQASVRKKSVSCIASLASSL-SDD-LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY--RFGPHLG 250 (1167)
Q Consensus 175 ll~~l~~~~~~vrk~a~~~l~~l~~~~-~~~-~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~p~l~ 250 (1167)
+++.++..+..-++.+...++.+...- +.. .-..++..+.+.+.+.+. . +.++.+++.+++..+. .+.||+-
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~--~--~~a~~~~~~~~~~~~~~~~~e~~~~ 94 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKT--A--ANAMQAVAHIANQSNLSPSVEPYIV 94 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHH--H--HHHHHHHHHHTCTTTCCTTTHHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCC--H--HHHHHHHHHHHHhcCCCCCcccchH
Confidence 333343333444566777777665421 111 002466666766655321 2 8999999999976543 6789998
Q ss_pred hhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchh
Q 001062 251 DTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDE 330 (1167)
Q Consensus 251 ~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~ 330 (1167)
.++|.++..+.+ ....+|++|-.+...++..+|.+- +..+++.++.++..
T Consensus 95 ~~~~~~~~~~~d---k~~~v~~aa~~~~~~~~~~~~~~a---~~~~~~~~~~~~~~------------------------ 144 (986)
T 2iw3_A 95 QLVPAICTNAGN---KDKEIQSVASETLISIVNAVNPVA---IKALLPHLTNAIVE------------------------ 144 (986)
T ss_dssp TTHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHSCGGG---HHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHhcC---CchHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHhcc------------------------
Confidence 899999999887 778999999999999999887642 35566666666531
Q ss_pred hcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccC
Q 001062 331 SANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQID 410 (1167)
Q Consensus 331 ~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~ 410 (1167)
...|..+.+|.++++.++...|+.+...+..++|.+.+.+.|...+|+..+..++..++...++.
T Consensus 145 ---------~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~------ 209 (986)
T 2iw3_A 145 ---------TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK------ 209 (986)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT------
T ss_pred ---------ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc------
Confidence 12599999999999999998899999999999999999998988889888888887777655431
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHH
Q 001062 411 NNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEAL 490 (1167)
Q Consensus 411 ~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al 490 (1167)
++++.+|.|+ +++.++. . .-++
T Consensus 210 --------d~~~~~~~~~---------------------------------------------~~~~~p~---~-~~~~- 231 (986)
T 2iw3_A 210 --------DIERFIPSLI---------------------------------------------QCIADPT---E-VPET- 231 (986)
T ss_dssp --------TTGGGHHHHH---------------------------------------------HHHHCTT---H-HHHH-
T ss_pred --------chhhhHHHHH---------------------------------------------HHhcChh---h-hHHH-
Confidence 3344444444 3333221 1 1111
Q ss_pred HHHHHHhcc-CCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhh
Q 001062 491 TFTRLVLSS-HSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLT 569 (1167)
Q Consensus 491 ~~l~~l~~~-~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~ 569 (1167)
+..+..+ .-.+.-.|.+.-++|.+..+++++...+...+.-+++++++-+.+ +.+..||++.++|.+-...
T Consensus 232 --~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~-----~~~~~~f~~~l~p~~~~~~- 303 (986)
T 2iw3_A 232 --VHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED-----PQVIAPFLGKLLPGLKSNF- 303 (986)
T ss_dssp --HHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC-----HHHHHHHHTTTHHHHHHHT-
T ss_pred --HHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC-----HHHHhhhhhhhhhHHHHHh-
Confidence 1111111 111233567788889999999888888888888899999987766 3467899999999886554
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhcCc
Q 001062 570 NQDQDQEVKECAISCMGLVISTFGD 594 (1167)
Q Consensus 570 ~~d~~~~vr~~Ai~alg~l~~~~g~ 594 (1167)
++-.++|+|+.|-.|+..+....+.
T Consensus 304 ~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 304 ATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hccCCHHHHHHHHHHHHHHHHhhcc
Confidence 4678999999999999999777543
No 60
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.06 E-value=7.9e-09 Score=113.18 Aligned_cols=238 Identities=12% Similarity=0.005 Sum_probs=173.8
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
.+..+++.+.++|+.+|..|...|.+.- .+..++.++..|.|+++.||..|+.+|+.+.. ....+..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~ 90 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDN 90 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC-----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchH
Confidence 4678888899999999999999997532 14578889999999999999999999998753 2233556
Q ss_pred HHHHHHH-HhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 001062 85 MTDKLCI-KLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1167)
Q Consensus 85 l~~~L~~-~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~ 163 (1167)
+++.|.. .+.++++.+|..++.+|..+....+. ....++|.|...+.++ ++.||..++..|+.+-.
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~------~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~~----- 157 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNPI------YSPKIVEQSQITAFDK--STNVRRATAFAISVIND----- 157 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc------ccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcCC-----
Confidence 6666653 34567778999999999987654332 1245678888888775 68999999999886432
Q ss_pred hhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh
Q 001062 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY 243 (1167)
Q Consensus 164 l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~ 243 (1167)
+..++.+...+.++++.||..|+.+++.+... ++ ..++.++..+.+++ ..+|..++.+++.+..
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~----~~~~~L~~~l~d~~--~~vR~~A~~aL~~~~~---- 221 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYD-NS----DIRDCFVEMLQDKN--EEVRIEAIIGLSYRKD---- 221 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-CH----HHHHHHHHHTTCSC--HHHHHHHHHHHHHTTC----
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-cH----HHHHHHHHHhcCCC--HHHHHHHHHHHHHhCC----
Confidence 23566777788899999999999999988522 22 34666777777654 5789999988887641
Q ss_pred hhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhc
Q 001062 244 RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLS 305 (1167)
Q Consensus 244 ~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~ 305 (1167)
+..+|.+...+++ + ++|..+.++++.+-. +..++.+.+++.
T Consensus 222 ------~~~~~~L~~~l~d---~--~vr~~a~~aL~~i~~----------~~~~~~L~~~l~ 262 (280)
T 1oyz_A 222 ------KRVLSVLCDELKK---N--TVYDDIIEAAGELGD----------KTLLPVLDTMLY 262 (280)
T ss_dssp ------GGGHHHHHHHHTS---S--SCCHHHHHHHHHHCC----------GGGHHHHHHHHT
T ss_pred ------HhhHHHHHHHhcC---c--cHHHHHHHHHHhcCc----------hhhhHHHHHHHh
Confidence 4577888887765 3 389999888886632 244555555554
No 61
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.03 E-value=4.6e-09 Score=112.92 Aligned_cols=236 Identities=17% Similarity=0.162 Sum_probs=174.5
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh--H--HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHH
Q 001062 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR--V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQ 122 (1167)
Q Consensus 47 i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~--~--~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~ 122 (1167)
.++.+++.|.++++++|..|+.+|+.++..-.+.. + ...++.|...+.+++..+|..++.+|..+....+. ...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~ 80 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE--AIK 80 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH--HHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH--HHH
Confidence 36789999999999999999999999986543211 1 14688888888888888899999999988764332 222
Q ss_pred HH-HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 001062 123 SI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASS 200 (1167)
Q Consensus 123 ~~-~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~ 200 (1167)
.+ -...+|.|+..|.++ ++.++..++.+|+.+.......... .....++.+++.+.++++.+|+.|+.+|+.++..
T Consensus 81 ~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 22 224788888888864 5899999999999988533222111 1224678888889898899999999999999876
Q ss_pred cCHH--HH--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHHH
Q 001062 201 LSDD--LL--AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSL 275 (1167)
Q Consensus 201 ~~~~--~~--~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~al 275 (1167)
.++. .+ ...++.++..+.+++ ...|..++.+++.++...+....... ..++|.+.+.+.+ .++++|+.|+
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~ 233 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS---TDSEVQKEAQ 233 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCC--HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC---CcHHHHHHHH
Confidence 4432 11 236788888887654 58899999999999875444322221 4588999998887 7889999999
Q ss_pred HHHHHHHHhCCccccc
Q 001062 276 QALESFLLRCPRDISS 291 (1167)
Q Consensus 276 ~~l~~l~~~~~~~~~~ 291 (1167)
+++..+....+....+
T Consensus 234 ~~L~~l~~~~~~~~~~ 249 (252)
T 4hxt_A 234 RALENIKSGGWLEHHH 249 (252)
T ss_dssp HHHHHHHHTCBCCC--
T ss_pred HHHHHHHcCCCccccc
Confidence 9999999887655444
No 62
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.01 E-value=4.1e-09 Score=113.38 Aligned_cols=238 Identities=16% Similarity=0.163 Sum_probs=172.9
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh---
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR--- 81 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~--- 81 (1167)
.+..+++.+.+.|+++|..|+..|.+...........-....+++.+++.|.+++.+||..|+.+|+.++..-.+..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 46788999999999999999999998876532111111223578999999999999999999999999986422211
Q ss_pred H-HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHH
Q 001062 82 V-VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1167)
Q Consensus 82 ~-~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~-~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~ 159 (1167)
. ...++.|...+.+++..+|..++.+|..++...+. ....+. ...+|.|++.+.++ ++.++..++.+|+.+...
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE--AIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASG 158 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH--HHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC
Confidence 1 13578888888888888999999999998854332 222222 34788888888865 589999999999998764
Q ss_pred hccchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH--HH--HHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001062 160 FGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD--LL--AKATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1167)
Q Consensus 160 ~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~--~~--~~l~~~l~~~l~~~~~~~~~r~~~~~~l 234 (1167)
...... -.....++.+...+.++++.+|+.|+.+|+.++...+.. .+ ...++.++..+++++ .+.|+.++.++
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~~L 236 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD--SEVQKEAQRAL 236 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc--HHHHHHHHHHH
Confidence 332211 112347788888898888999999999999999743332 11 235778888887654 58899999999
Q ss_pred HHHHHHhhhhhhcc
Q 001062 235 GALSRAVGYRFGPH 248 (1167)
Q Consensus 235 ~~l~~~~~~~~~p~ 248 (1167)
+.++...+....+|
T Consensus 237 ~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 237 ENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHTCBCCC---
T ss_pred HHHHcCCCcccccc
Confidence 99999876655544
No 63
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.99 E-value=6.4e-05 Score=91.97 Aligned_cols=289 Identities=13% Similarity=0.100 Sum_probs=186.4
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCCCccchHHHHHHhcCCCh--------hhHHHHHHHHHHhhhhc
Q 001062 811 STVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPF--------EEIKSAASYALGNIAVG 882 (1167)
Q Consensus 811 ~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~l~~~l~~~~--------e~vr~aaa~aLG~l~~~ 882 (1167)
..+..+-+++....+.++-.+.-|++.||-++.... .+..+.+...+.+++ +.+|..|+.+||.+..|
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G 467 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG 467 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC
Confidence 345555555542112456678899999998876542 245677777776544 77999999999998777
Q ss_pred Ccc-cchHHHHHHhhccc-chhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhcccc
Q 001062 883 NLS-KFLPFILDQIDNQQ-KKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALI 960 (1167)
Q Consensus 883 ~~~-~~lp~l~~~l~~~~-~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~ 960 (1167)
.-. ..++.|.+.+.++. ..++.+..||+-+...++.. ..+..++..+.+ +.++++|+.++.+||-+...
T Consensus 468 S~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~------~ai~~LL~~~~e---~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 468 SANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP------EAIHDMFTYSQE---TQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH------HHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH------HHHHHHHHHHhc---cCcHHHHHHHHHHHHhhhCC
Confidence 544 46777777776543 34566777787765544431 234555555543 34578999999999999888
Q ss_pred CcccchHHHHHhhc-CCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhh-ccCCChHHHHHHHHHHHHHHhcCch
Q 001062 961 EPAKLVPALKVRTT-SSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLML-IKDQDRHVRRAAVLALSTFAHNKPN 1038 (1167)
Q Consensus 961 ~~~~~lp~l~~~~~-~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~-l~d~d~~vr~~a~~~L~~~a~~~p~ 1038 (1167)
.++.. +.+.+.+. +.++..|+.++.++.-.....+. ...+..+|.. ..|.+.+||+.|+.+|+-++-..|+
T Consensus 539 ~~e~~-~~li~~L~~~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 539 RQELA-DDLITKMLASDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp CGGGG-HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS
T ss_pred ChHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH
Confidence 87555 55655544 67899999988877655444432 1235555553 3477889999999999988766664
Q ss_pred hhhchhhhhhHHHHHhhhccccceeeeeccCceeecccChhHHHHHHHHHHHHHhhccccCCcccchHHHHhcccCC-cc
Q 001062 1039 LIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-HY 1117 (1167)
Q Consensus 1039 ~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~d~gle~Rk~a~~~~~~ll~~~~~~~~~~~~~~~~~~~gl~D-~~ 1117 (1167)
. .|.++..+.. +....+|+.|--++.-+- .+.. ..+.+ +.+...+.| +.
T Consensus 612 ~--------v~rlv~~L~~-----------------~~d~~VR~gAalALGli~---aGn~-~~~ai-d~L~~L~~D~d~ 661 (963)
T 4ady_A 612 T--------VPRIVQLLSK-----------------SHNAHVRCGTAFALGIAC---AGKG-LQSAI-DVLDPLTKDPVD 661 (963)
T ss_dssp S--------HHHHTTTGGG-----------------CSCHHHHHHHHHHHHHHT---SSSC-CHHHH-HHHHHHHTCSSH
T ss_pred H--------HHHHHHHHHh-----------------cCCHHHHHHHHHHHHHhc---cCCC-cHHHH-HHHHHHccCCCH
Confidence 2 3333332221 334578877765444322 2222 23444 566677889 99
Q ss_pred hhHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Q 001062 1118 DVKMPCHLILSKLADKCPSAVLADFLHLMYTI 1149 (1167)
Q Consensus 1118 di~~l~~~~l~~l~~~~p~~~~~~l~~l~~~~ 1149 (1167)
+||..+...|+.+.........+++.++...+
T Consensus 662 ~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L 693 (963)
T 4ady_A 662 FVRQAAMIALSMILIQQTEKLNPQVADINKNF 693 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 99999999999998877666434444443333
No 64
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.94 E-value=1.7e-06 Score=103.53 Aligned_cols=487 Identities=12% Similarity=0.091 Sum_probs=275.4
Q ss_pred CCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHHHhcCccccc-c
Q 001062 522 ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIM-SRLTNQDQDQEVKECAISCMGLVISTFGDNLGA-E 599 (1167)
Q Consensus 522 d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll-~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~-~ 599 (1167)
-+...++.-++-++..+.+.... .+...+...+..++ +.=.....+ + -..++.++..+.-...+.-+. +
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~~-------~~~~~~~~~~~~l~~e~~~~~~~~-~-~~~~~~~l~~lfPi~p~~~s~lf 251 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQK-------DFDKAVVDFMSSLIVEAEIDVGND-P-LSIIVKTLSELYPSLTTLCSEIF 251 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTCSSC-H-HHHHHHHHHHHTTTTHHHHHHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCch-------HHHHHHHHHHHHHHHhhccCCCCc-c-HHHHHHHHHHHhcCCHHHHHHHH
Confidence 34568999999999888776432 34455555555332 221211122 2 235666666554332221111 1
Q ss_pred h-hhhHHHHHHhhcCc---hhhHHHHHHHHHHhcCCCCCchhh-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhC
Q 001062 600 L-PACLPVLVDRMGNE---ITRLTAVKAFAVIAASPLHIDLTC-VLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYG 674 (1167)
Q Consensus 600 ~-~~~l~~L~~~L~~e---~~r~~a~~al~~i~~~~~~~~~~~-~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~ 674 (1167)
+ +.+.+.+.++++.. ......++.+...|.. ...-. +....++.|...+. ++.+|..|+.+|..+....+
T Consensus 252 l~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~---~~cR~~I~~~~~~~L~~~l~--~~~ir~lAavvL~KL~~~~~ 326 (778)
T 3opb_A 252 LTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACID---ETMRTYITENYLQLLERSLN--VEDVQIYSALVLVKTWSFTK 326 (778)
T ss_dssp STTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHTT--SGGGHHHHHHHHHHHTGGGT
T ss_pred ccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC---cHHHHHHHHhHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCC
Confidence 1 22345555555222 2223445555444422 11122 23445566665553 35788889999988876543
Q ss_pred CCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHHHHHhhcccCCCchhhhh--hhchHHHHHHHhhhccchhhhHHHHHH
Q 001062 675 DKIGASAYEVIIVELSTLISDSDLHMTALALELCCTLMADKRSSPNVGLAV--RNKVLPQALALIKSSLLQGQALVALQS 752 (1167)
Q Consensus 675 ~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l~~l~~~~~~~p~~~~~~--~~~~l~~l~~ll~~~~l~~~~l~~~~~ 752 (1167)
. ....+..+...+...+.+++..-+..+++.|+.+... |++.+.. .+.+++.++++++.+. .....+..+.
T Consensus 327 ~--~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~----~~VKe~L~~d~~~L~~Lv~llk~~~-d~s~~Ygal~ 399 (778)
T 3opb_A 327 L--TCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK----ASVKIMIRSNESFTEILLTMIKSQK-MTHCLYGLLV 399 (778)
T ss_dssp C--TTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS----SHHHHHHHHCHHHHHHHHHHHTTTC-CTTHHHHHHH
T ss_pred C--CcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC----HHHHHHHHhCHHHHHHHHHHHhCCC-CchHHHHHHH
Confidence 2 1234566777788888776666688999999999763 5544332 4567889999887532 2344577788
Q ss_pred HHHHHHhccCCChH--HHHHHHhhcCCCCCCCc-chhhhhhHHHHHHHHHHHhhcCCcchhHHHHHHHHHhhcCCCCchH
Q 001062 753 FFAALVYSANTSFD--TLLDSLLSSAKPSPQSG-GVAKQAMYSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSTNSA 829 (1167)
Q Consensus 753 ~~~~l~~~~~~~~~--~ll~~L~~~~~~~~~~~-~~~~~a~~~~a~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 829 (1167)
++.++....+...+ +=+..|......+ .+. +-+......-.......+..--+ .++++.|...+++ .++.
T Consensus 400 IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~-~p~~~~~d~~~~~~~~v~~~~~~~l~e---aGvIp~Lv~Ll~S---~s~~ 472 (778)
T 3opb_A 400 IMANLSTLPEEXXXXXXXXXXXXXXXXXX-XPAADKVGAEKAAKEDILLFNEKYILR---TELISFLKREMHN---LSPN 472 (778)
T ss_dssp HHHHTTCCCCCCCCCCC-------------------CCTHHHHHHHHHHHHHHHTTT---TTHHHHHHHHGGG---SCHH
T ss_pred HHHHhcCCCcccchhhhhhhhhhhhcccc-CcccCcccccccchHHHHHHHHHHHHH---CcCHHHHHHHHcC---CCHH
Confidence 88888765432110 0122222222110 000 00000000000111101000011 2577778777765 3556
Q ss_pred HHHHHHHHHhhhhccCCCC--C-ccchHHHHHHhcCCChhh---HHHHHHHHHHhhhhc-Cc---------ccchHHHHH
Q 001062 830 KQHLALLCLGEIGRRKDLS--S-HEHIENVIIESFQSPFEE---IKSAASYALGNIAVG-NL---------SKFLPFILD 893 (1167)
Q Consensus 830 ~~~lal~~Lgei~~~~~~~--~-~~~~~~~l~~~l~~~~e~---vr~aaa~aLG~l~~~-~~---------~~~lp~l~~ 893 (1167)
.+..+..+|+.+....... . ..+.++.++.++.+.++. +|..|+.||+++... |+ ...+|.+++
T Consensus 473 ~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~ 552 (778)
T 3opb_A 473 CKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFE 552 (778)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHH
Confidence 6777777777775442111 0 135678899999877544 899999999998842 22 135688888
Q ss_pred Hhhcccc---------------hhHHHHHHHHHHHhhccccchhhhh-HHHH--HHHHHHHhhccCCccchhhHHHHHhh
Q 001062 894 QIDNQQK---------------KQYLLLHSLKEVIVRQSVDKAEFQD-SSVE--KILNLLFNHCESEEEGVRNVVAECLG 955 (1167)
Q Consensus 894 ~l~~~~~---------------~~~~~l~aLkei~~~~~~~~~~~l~-~~~~--~i~~~L~~~~~~~~e~vr~~aa~~Lg 955 (1167)
.+..++. .++-++.||.-+....... .+.++ ..+. ..|+.|.+.+.++.+.+|+.|.+++.
T Consensus 553 LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~-~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~ 631 (778)
T 3opb_A 553 LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSD-GEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELIS 631 (778)
T ss_dssp TSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHH-HHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCccc-chHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8873221 1566777887776543210 01122 2333 47888888777667889999999999
Q ss_pred hccccCc---ccc-----------hHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhh--HhHHHHHhhccC--C
Q 001062 956 KIALIEP---AKL-----------VPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIF--PEISSFLMLIKD--Q 1017 (1167)
Q Consensus 956 ~l~~~~~---~~~-----------lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~--~~i~~~l~~l~d--~ 1017 (1167)
+|+.... ..| ++.|..++...+...|..+.+++..+-+....-....+. ..+..++..|++ +
T Consensus 632 NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~ 711 (778)
T 3opb_A 632 NMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQID 711 (778)
T ss_dssp HHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred HHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCC
Confidence 9996332 122 556888888888999999999998653322211122222 356777788888 8
Q ss_pred ChHHHHHHHHHHHHHHhcCc
Q 001062 1018 DRHVRRAAVLALSTFAHNKP 1037 (1167)
Q Consensus 1018 d~~vr~~a~~~L~~~a~~~p 1037 (1167)
+.++|.-++.++..++...|
T Consensus 712 ~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 712 DIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp CHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999986333
No 65
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.94 E-value=3.7e-09 Score=113.82 Aligned_cols=231 Identities=16% Similarity=0.137 Sum_probs=167.5
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh--
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR-- 81 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~-- 81 (1167)
+.+..+.+.+.+.|+++|..|+..|.+.+.........-....+++.+++.|.+++++||..|+.+|+.++..-.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 456788999999999999999999998887522111112233567899999999999999999999999986432211
Q ss_pred H--HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHH
Q 001062 82 V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHK 159 (1167)
Q Consensus 82 ~--~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~ 159 (1167)
+ ...++.|...+.+++..+|..++.+|..+..+-+.. ...-+-...+|.|++.|.++ ++.++..++.+|+.+...
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTS
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH-HHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcC
Confidence 1 136888888888888889999999999887643321 11112234789999999775 689999999999999864
Q ss_pred hccchhH-HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH---HHH-HHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001062 160 FGNLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD---LLA-KATIEVVRNLRSKGAKPEMIRTNIQMV 234 (1167)
Q Consensus 160 ~g~~l~~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~---~~~-~l~~~l~~~l~~~~~~~~~r~~~~~~l 234 (1167)
....... .....++.++..+.++++.+|+.|+.+|+.++...++. +.+ ..++.++..+++.+ .+.|+.++.++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~v~~~A~~~L 246 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN--EKIQKEAQEAL 246 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSS--SHHHHTHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 3322111 12346788888898888999999999999998543332 122 26777777777654 37888888888
Q ss_pred HHHHH
Q 001062 235 GALSR 239 (1167)
Q Consensus 235 ~~l~~ 239 (1167)
+.++.
T Consensus 247 ~~l~~ 251 (252)
T 4db8_A 247 EKLQS 251 (252)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 77653
No 66
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.93 E-value=6.5e-09 Score=111.84 Aligned_cols=225 Identities=16% Similarity=0.152 Sum_probs=167.3
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHH-----HHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHH
Q 001062 48 SNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV-----EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQ 122 (1167)
Q Consensus 48 ~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~-----~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~ 122 (1167)
.+.+++.|.++++++|..|+.+|..+... .++... ..++.|...+.+++..+|..++.+|..++.+.+. ...
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~ 90 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE--QIQ 90 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH--HHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH--HHH
Confidence 66778888999999999999999876654 222222 3578888888888888899999999988764333 222
Q ss_pred HHHH-HHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 001062 123 SIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLSANQASVRKKSVSCIASLASS 200 (1167)
Q Consensus 123 ~~~~-~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~ 200 (1167)
.+.+ ..+|.|+..|.++ ++.++..++.+|+.+......... -.....++.+++.+.++++.+|+.|+.+|+.++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 2332 3789999999875 589999999999998755433211 12234778888999999899999999999999975
Q ss_pred cCHHH---H-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHHH
Q 001062 201 LSDDL---L-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSL 275 (1167)
Q Consensus 201 ~~~~~---~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~al 275 (1167)
.++.. . ...++.++..+.++ +...+..++.+++.++...+......+ ..++|.+.+.+.+ .++++|+.|.
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~A~ 243 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH---ENEKIQKEAQ 243 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC---SSSHHHHTHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC---CCHHHHHHHH
Confidence 53321 1 34678888888776 358899999999999865544333322 3488888888887 7889999999
Q ss_pred HHHHHHH
Q 001062 276 QALESFL 282 (1167)
Q Consensus 276 ~~l~~l~ 282 (1167)
+++..++
T Consensus 244 ~~L~~l~ 250 (252)
T 4db8_A 244 EALEKLQ 250 (252)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 9988664
No 67
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.91 E-value=1.1e-05 Score=105.77 Aligned_cols=532 Identities=13% Similarity=0.056 Sum_probs=282.6
Q ss_pred HHHHHHHHHhcCC--ChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhh----hc
Q 001062 4 LQMAAILEKITGK--DKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVK----KV 77 (1167)
Q Consensus 4 ~~i~~ll~~~~~~--d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~----~~ 77 (1167)
.++..+++.+.+| |++.|..|..-|.+.=+.+ +....+...+. -.+.+..||..|...|...++ .+
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p------~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC------PICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC------TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc------hHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 4567778888887 7778999988886542221 12222222222 246688999999999888774 35
Q ss_pred ChhhHHHHHHHHHHHhcC-------CCcchhcHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHH
Q 001062 78 SEPRVVEMTDKLCIKLLN-------GKDQHRDIASIALKTIIAE-VTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCEC 149 (1167)
Q Consensus 78 ~~~~~~~l~~~L~~~~~~-------~~~~~r~~a~~aL~~~~~~-~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~ 149 (1167)
+++....+-+.|++.+.+ ....+|...+.++..++.. .|. .+. .+++.|++.++. ++..++.+
T Consensus 83 ~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~--~Wp----~ll~~L~~~~~~---~~~~~e~~ 153 (1204)
T 3a6p_A 83 SRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ--HWP----DMLIELDTLSKQ---GETQTELV 153 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT--TCT----THHHHHHHHHHT---CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc--cch----HHHHHHHHHhcC---CHHHHHHH
Confidence 666555666666666542 2234666677777776654 332 222 344555544443 35567778
Q ss_pred HHHHHHHHHHhcc--------------chhHHHHHHHHHHhhhhcC-------------------ChHHHHHHHHHHHHH
Q 001062 150 LDILCDVLHKFGN--------------LMSNDHERLLSALLPQLSA-------------------NQASVRKKSVSCIAS 196 (1167)
Q Consensus 150 ~~~L~~l~~~~g~--------------~l~~~~~~l~~~ll~~l~~-------------------~~~~vrk~a~~~l~~ 196 (1167)
+.+|..+.+.... .+....+.+++.+...+.+ +...+++.++.|+..
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 8888887664211 1223334555555555432 123678888888887
Q ss_pred HHhhcCHHHH-H---HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh--hhhhhcchhhh----HHHHHHHhhh-c--
Q 001062 197 LASSLSDDLL-A---KATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV--GYRFGPHLGDT----VPVLIDYCTS-A-- 263 (1167)
Q Consensus 197 l~~~~~~~~~-~---~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~--~~~~~p~l~~l----vp~l~~~l~~-~-- 263 (1167)
...-.+-..+ . .+++.+...+.+ .+.|..++.++..++..- +..+.+.+..+ +..+++.... .
T Consensus 234 ~l~Wi~~~~i~~~~~~ll~~l~~~l~~----~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVSMSHITAENCKLLEILCLLLNE----QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSCHHHHHTTTSHHHHHHHHGGGC----TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccCHHHHHhccchHHHHHHHHcCC----HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 7766665543 2 377777765553 257889999999998743 34444444333 2234444321 0
Q ss_pred --CCCChhHHHHHHHHHHHHHHh-------CC-ccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcC
Q 001062 264 --SENDEELREYSLQALESFLLR-------CP-RDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESAN 333 (1167)
Q Consensus 264 --~e~~~e~re~al~~l~~l~~~-------~~-~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~ 333 (1167)
+|++.++++.-.+.+..+... .+ ....+.+..+++.++.+..+ |+ +
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~-~~------------------~----- 365 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTH-PS------------------Q----- 365 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTS-SC------------------H-----
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhC-cc------------------H-----
Confidence 112344444433333333211 10 02345677888888888763 11 0
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHhc----CChhhHHHHHHHhhHH---HhhhccCC--h--------------------
Q 001062 334 EYTDDEDASWKVRRAAAKCLAALIVS----RPEMLSKLYEEACPKL---IDRFKERE--E-------------------- 384 (1167)
Q Consensus 334 ~~~dddd~sw~vR~aA~~~l~~li~~----~~~~l~~~~~~i~p~L---~~~l~d~~--~-------------------- 384 (1167)
.|-..+...+..++.. ..+.+.+++..+++.+ +.+++-++ +
T Consensus 366 ----------~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~ 435 (1204)
T 3a6p_A 366 ----------FLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAF 435 (1204)
T ss_dssp ----------HHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHH
T ss_pred ----------HhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHH
Confidence 1222222233333322 1233445666666666 44432111 0
Q ss_pred --hHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhcc-------------------------
Q 001062 385 --NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLRE------------------------- 437 (1167)
Q Consensus 385 --~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~------------------------- 437 (1167)
+.|..+...+..+.... |. ..++.+.+.+...+.+
T Consensus 436 f~~~Rk~~~d~l~~i~~v~--------------p~----~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s 497 (1204)
T 3a6p_A 436 FNSSRAQQGEVMRLACRLD--------------PK----TSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFS 497 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------HH----HHHHHHHHHHHHHHTCC-----------------CCSCSSS
T ss_pred HHHHHHHHHHHHHHHHhcC--------------HH----HHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCC
Confidence 11222222222222211 10 1112222333222221
Q ss_pred CChhhHHHHHHHHHHHHHhcCchh-Hhhhh-hhHHHHHHhccc-CCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHH
Q 001062 438 KSIKTKVGAFSVLRELVVVLPDCL-ADHIG-SLIPGIEKSLND-KSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSS 514 (1167)
Q Consensus 438 ~~~~~r~~~~~~l~~l~~~~~~~l-~~~l~-~l~~~l~~~l~d-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~ 514 (1167)
..+....+.+.++..+........ .++++ .+++.++..+-. ...++.++...+.+++.+..... .-..+++.++.
T Consensus 498 ~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~--~~p~~L~~vL~ 575 (1204)
T 3a6p_A 498 PSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVT--YRPEFLPQVFS 575 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGG--TCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 011123344444554443321111 12232 234444444221 11245677788888777665432 11247778888
Q ss_pred HHHHHhcC------------CchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCC-CCHHHHHHH
Q 001062 515 PVLAAVGE------------RYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQD-QDQEVKECA 581 (1167)
Q Consensus 515 ~l~~~l~d------------~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d-~~~~vr~~A 581 (1167)
.++..+.+ ...+++..|..++..+++.++. .+.||++.+...+-..+.... .+.+-+..-
T Consensus 576 ~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~-------~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L 648 (1204)
T 3a6p_A 576 KLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ-------LVLPNFDMLYNHVKQLLSNELLLTQMEKCAL 648 (1204)
T ss_dssp HHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH-------HHGGGHHHHHHHHHHHHHSTTTSCHHHHHHH
T ss_pred HHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHhCcccccHHHHHHH
Confidence 88877765 1236888888888888877644 578999999998877775444 455556666
Q ss_pred HHHHHHHHHhcCccc--ccchhhhHHHHHHhhcCchhh
Q 001062 582 ISCMGLVISTFGDNL--GAELPACLPVLVDRMGNEITR 617 (1167)
Q Consensus 582 i~alg~l~~~~g~~l--~~~~~~~l~~L~~~L~~e~~r 617 (1167)
..+++.+....+..- ..++..+++-+.+.+.++..+
T Consensus 649 ~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~ 686 (1204)
T 3a6p_A 649 MEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMH 686 (1204)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 777777643333321 125777777777777765443
No 68
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.91 E-value=1.6e-06 Score=102.24 Aligned_cols=355 Identities=17% Similarity=0.122 Sum_probs=221.3
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh--H--HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHH
Q 001062 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR--V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQ 122 (1167)
Q Consensus 47 i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~--~--~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~ 122 (1167)
-++.+++.|.+++.++|..|+.+|..++..-.+.. + ...++.|...+.+++..++..|+.||+.+...-..+ ...
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~-nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD-NKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH-HHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH-HHH
Confidence 36777788899999999999999998885322211 1 135788999999988899999999999987632221 111
Q ss_pred HH-HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhcc--ch-hHHHHHHHHHHhh-h------------h-cCChH
Q 001062 123 SI-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN--LM-SNDHERLLSALLP-Q------------L-SANQA 184 (1167)
Q Consensus 123 ~~-~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~--~l-~~~~~~l~~~ll~-~------------l-~~~~~ 184 (1167)
.+ -...+|.|+..|.+.. +..+++.+..+|..+..+-.. .+ ....+.++..+.. . + ..++.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 12 2346788888887632 577888888888877653211 11 1223334443320 0 1 12245
Q ss_pred HHHHHHHHHHHHHHhhcCH--H-HH--HHHHHHHHHHhhc----CCCChHHHHHHHHHHHHHHHHhhhhh------h---
Q 001062 185 SVRKKSVSCIASLASSLSD--D-LL--AKATIEVVRNLRS----KGAKPEMIRTNIQMVGALSRAVGYRF------G--- 246 (1167)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~--~-~~--~~l~~~l~~~l~~----~~~~~~~r~~~~~~l~~l~~~~~~~~------~--- 246 (1167)
.|++.|..||..++..-++ . +. .-+++.++..+++ ...+....+.++-++..++..+.... .
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 8999999999999975433 1 11 1234445544432 22234677888888888776532111 0
Q ss_pred ---------------c--chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC---ccccccH--HHHHHHHHHhh
Q 001062 247 ---------------P--HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP---RDISSYC--DEILHLTLEYL 304 (1167)
Q Consensus 247 ---------------p--~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~---~~~~~~l--~~ii~~~~~~l 304 (1167)
. +-+.+++.++..+... ..+++++.|..++..++..-. ..++..+ ...++.+.+++
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s--~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKES--KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 0 1145678888888652 568999999999999975321 1222222 34567777777
Q ss_pred ccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccC--
Q 001062 305 SYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKER-- 382 (1167)
Q Consensus 305 ~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~-- 382 (1167)
... +.+|++.|+.+|+.+..... .-..+-...+|.|++.+...
T Consensus 365 ~s~----------------------------------~~~v~~~A~~aL~nLs~~~~-~~~~I~~g~ip~LV~LL~~~~~ 409 (584)
T 3l6x_A 365 TNE----------------------------------HERVVKAASGALRNLAVDAR-NKELIGKHAIPNLVKNLPGGQQ 409 (584)
T ss_dssp GCS----------------------------------CHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSSSSC
T ss_pred cCC----------------------------------CHHHHHHHHHHHHHHhCChh-HHHHHHhCCHHHHHHHhcCCcc
Confidence 521 12899999999999876432 22234456889999888544
Q ss_pred ------ChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH-HHHHHHHHHHhccC--ChhhHHHHHHHHHHH
Q 001062 383 ------EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREK--SIKTKVGAFSVLREL 453 (1167)
Q Consensus 383 ------~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~-~~l~~~l~~~L~~~--~~~~r~~~~~~l~~l 453 (1167)
.+.++..++.++..++... + ..-+... ...++.+..++.+. +++++..|..+|..+
T Consensus 410 ~~~~~~s~~v~~~a~~tL~NL~a~~--------------~-~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 410 NSSWNFSEDTVISILNTINEVIAEN--------------L-EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp SGGGTCCHHHHHHHHHHHHHHHTTC--------------H-HHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhcCC--------------H-HHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 3567777777777766321 1 0111111 23456666777665 677888888888887
Q ss_pred HH
Q 001062 454 VV 455 (1167)
Q Consensus 454 ~~ 455 (1167)
+.
T Consensus 475 ~~ 476 (584)
T 3l6x_A 475 WG 476 (584)
T ss_dssp HT
T ss_pred Hc
Confidence 64
No 69
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.91 E-value=6.6e-07 Score=84.27 Aligned_cols=203 Identities=15% Similarity=0.224 Sum_probs=149.7
Q ss_pred cchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHH
Q 001062 341 ASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLL 420 (1167)
Q Consensus 341 ~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l 420 (1167)
.-|.||+-|...+..+++.+|+...+...+++--+. ++..-..-+++..+++.+.+.-
T Consensus 44 DlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~---ksEaIpltqeIa~a~G~la~i~------------------- 101 (253)
T 2db0_A 44 DLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKEK------------------- 101 (253)
T ss_dssp SCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---HCCSHHHHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hcccCchHHHHHHHHhHHHHhC-------------------
Confidence 369999999999999999999876666655543221 2222233467778888876542
Q ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccC
Q 001062 421 KQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1167)
Q Consensus 421 ~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1167)
.+.+..+++.++..+.-..++.|...-.+|..++...|.. ++.++.-+...+.+++ ..-|..+++|++.+-++
T Consensus 102 Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd--~~Dkl~aLnFi~alGen- 174 (253)
T 2db0_A 102 PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKN--REDKLTALNFIEAMGEN- 174 (253)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSS--HHHHHHHHHHHHTCCTT-
T ss_pred HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHhcc-
Confidence 2355666777777777668899999999999999887664 5667777778888763 45688888888876443
Q ss_pred CCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHH
Q 001062 501 SPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKEC 580 (1167)
Q Consensus 501 ~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~ 580 (1167)
. ..|+.+++|-+...+.|++--||..|..+++.+... .|.+.+++...++.+. |.+..|...
T Consensus 175 ---~-~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~------------npklRkii~~kl~e~~--D~S~lv~~~ 236 (253)
T 2db0_A 175 ---S-FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATL------------NDKLRKVVIKRLEELN--DTSSLVNKT 236 (253)
T ss_dssp ---T-HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS------------CHHHHHHHHHHHHHCC--CSCHHHHHH
T ss_pred ---C-ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHc------------CHHHHHHHHHHHHHhc--CcHHHHHHH
Confidence 2 347888889999999999999999999999999753 3457777776666664 667778877
Q ss_pred HHHHHHHHHH
Q 001062 581 AISCMGLVIS 590 (1167)
Q Consensus 581 Ai~alg~l~~ 590 (1167)
.-.+++.+..
T Consensus 237 V~egL~rl~l 246 (253)
T 2db0_A 237 VKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888887753
No 70
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.84 E-value=9.1e-07 Score=103.77 Aligned_cols=348 Identities=14% Similarity=0.127 Sum_probs=218.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh-h-hH--HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHH
Q 001062 48 SNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE-P-RV--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQS 123 (1167)
Q Consensus 48 ~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~-~-~~--~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~ 123 (1167)
++.+++.|.++++++|..|+.+|..++..-.+ + .+ ...++.|...+.+++..++..|+.+|+.+...-+. ....
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~--~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT--NKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH--HHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH--HHHH
Confidence 56788889999999999999999999853322 1 11 23478888888888888899999999998874222 2222
Q ss_pred H-HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHhhhhc--------CC--------hHH
Q 001062 124 I-HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS-NDHERLLSALLPQLS--------AN--------QAS 185 (1167)
Q Consensus 124 ~-~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~-~~~~~l~~~ll~~l~--------~~--------~~~ 185 (1167)
+ -...+|.|++.|.... +.++++.+..+|..+... .... ......++.|+..+. ++ +..
T Consensus 82 i~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence 2 2245788998887322 589999999999999865 2222 122256666776662 22 346
Q ss_pred HHHHHHHHHHHHHhhcCHH---HHH--HHHHHHHHHhhc----CCCChHHHHHHHHHHHHHHHHhhh-------------
Q 001062 186 VRKKSVSCIASLASSLSDD---LLA--KATIEVVRNLRS----KGAKPEMIRTNIQMVGALSRAVGY------------- 243 (1167)
Q Consensus 186 vrk~a~~~l~~l~~~~~~~---~~~--~l~~~l~~~l~~----~~~~~~~r~~~~~~l~~l~~~~~~------------- 243 (1167)
+.+.|+.+|..++.. ++. +.+ ..++.++..+++ ...+...++.++.++..++.....
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 777999999999976 221 121 456667666653 111224455565555555321000
Q ss_pred -----------hhhc---------------------------chhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhC
Q 001062 244 -----------RFGP---------------------------HLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRC 285 (1167)
Q Consensus 244 -----------~~~p---------------------------~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~ 285 (1167)
-|++ +-..+++.++..+... .++++++.|.+++..++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~--~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS--KKDATLEACAGALQNLTASK 315 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTCS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhc--CCHHHHHHHHHHHHHhccCc
Confidence 0000 1144677777777763 46889999999999987643
Q ss_pred Cc---cc-cccH--HHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhc
Q 001062 286 PR---DI-SSYC--DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS 359 (1167)
Q Consensus 286 ~~---~~-~~~l--~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~ 359 (1167)
+. .+ +..+ ...++.+.+++... +.++|+.|+.+|+.+...
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~~----------------------------------~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQSG----------------------------------NSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTCS----------------------------------CHHHHHHHHHHHHHHHTS
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhCC----------------------------------CHhHHHHHHHHHHHHhcC
Confidence 22 12 1111 13455566665410 128999999999988653
Q ss_pred CChhhHHHHHHHhhHHHhhhccCC------hhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HHHHHHH
Q 001062 360 RPEMLSKLYEEACPKLIDRFKERE------ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVKSI 431 (1167)
Q Consensus 360 ~~~~l~~~~~~i~p~L~~~l~d~~------~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~l~~~l 431 (1167)
++.-..+-...+|.|++.+...+ +.+...++.++..++.... .....+ ...++.+
T Consensus 362 -~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~----------------~~~~~i~~~g~l~~L 424 (457)
T 1xm9_A 362 -PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP----------------QLAKQYFSSSMLNNI 424 (457)
T ss_dssp -GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT----------------HHHHHHCCHHHHHHH
T ss_pred -HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH----------------HHHHHHHHcCCHHHH
Confidence 33223344567888988885442 3566677777777764321 111111 3456666
Q ss_pred HHHhccC-ChhhHHHHHHHHHHHH
Q 001062 432 NRQLREK-SIKTKVGAFSVLRELV 454 (1167)
Q Consensus 432 ~~~L~~~-~~~~r~~~~~~l~~l~ 454 (1167)
...+++. +.+++..+..+|..++
T Consensus 425 ~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 425 INLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Confidence 7777777 7888888888777654
No 71
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.81 E-value=5.3e-07 Score=105.76 Aligned_cols=354 Identities=10% Similarity=0.126 Sum_probs=222.9
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
.+..+++.+.+.|+++|+.|+..|.+....+...-..-.....++.|++.|.++++++|..|+.+|..|+..- ++.-..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHH
Confidence 4677888899999999999999999866432110001122345889999999999999999999999998642 222222
Q ss_pred -----HHHHHHHHhc-CCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhc--------cC------CChh
Q 001062 85 -----MTDKLCIKLL-NGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITL--------KD------MNTE 144 (1167)
Q Consensus 85 -----l~~~L~~~~~-~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~--------~~------~~~~ 144 (1167)
.++.|...+. +++.+++..++.+|..+... +. ....+.+..+|.|++.|.. +. .+..
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~--~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE--LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS--THHHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH--hHHHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence 3778888887 67778899999999999877 33 2333445788999888831 10 1345
Q ss_pred HHHHHHHHHHHHHHHhccchhHHH--HHHHHHHhhhhcC------ChHHHHHHHHHHHHHHHhhcC--------------
Q 001062 145 IRCECLDILCDVLHKFGNLMSNDH--ERLLSALLPQLSA------NQASVRKKSVSCIASLASSLS-------------- 202 (1167)
Q Consensus 145 v~~~~~~~L~~l~~~~g~~l~~~~--~~l~~~ll~~l~~------~~~~vrk~a~~~l~~l~~~~~-------------- 202 (1167)
+...+..+|..+... ........ +..++.|+..+.+ .+..++..++.++..++....
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 566888899888754 22111111 1344555555543 223455555555555431100
Q ss_pred --------------------------------------HH-H-HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 001062 203 --------------------------------------DD-L-LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1167)
Q Consensus 203 --------------------------------------~~-~-~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~ 242 (1167)
-+ + -...++.++..+++.. +...++.++.+++.++...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~~~~e~a~~aL~nl~~~~~ 316 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK-KDATLEACAGALQNLTASKG 316 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTCSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC-CHHHHHHHHHHHHHhccCcC
Confidence 00 0 1234666667776654 35788888999999886432
Q ss_pred h---hh-hcch--hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccc-cHHHHHHHHHHhhccC-CCCCCCC
Q 001062 243 Y---RF-GPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISS-YCDEILHLTLEYLSYD-PNFTDNM 314 (1167)
Q Consensus 243 ~---~~-~p~l--~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~-~l~~ii~~~~~~l~~d-p~~~~~~ 314 (1167)
. .. ...+ ...+|.+++.+.+ .+++++..|.+++..+... ..... .-...++.+.+.+... +.
T Consensus 317 ~~~~~~~~~~v~~~~~l~~Lv~LL~~---~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~~Lv~lL~~~~~~----- 386 (457)
T 1xm9_A 317 LMSSGMSQLIGLKEKGLPQIARLLQS---GNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLTSHTGN----- 386 (457)
T ss_dssp SHHHHHHHHHHTTSCCHHHHHHHTTC---SCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHHHHHHTTTSCCSC-----
T ss_pred cchHHHHHHHHHHcCCchHHHHHHhC---CCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhHHHHHhccCCCCC-----
Confidence 1 12 1112 3578999999988 7889999999999999763 23322 2234556666666421 00
Q ss_pred CCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHH-HHHhhHHHhhhccC-ChhHHHHHHH
Q 001062 315 EEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKER-EENVKMDVFN 392 (1167)
Q Consensus 315 ~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~-~~i~p~L~~~l~d~-~~~vr~~~~~ 392 (1167)
...+-++-.+++.+++.++...++....+. ...+|.|++-++.. ++.++..+..
T Consensus 387 ------------------------~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~ 442 (457)
T 1xm9_A 387 ------------------------TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442 (457)
T ss_dssp ------------------------STTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------------------------CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHH
Confidence 001125777888889888876664332222 13567777666655 7888888877
Q ss_pred HHHHHH
Q 001062 393 TFIELV 398 (1167)
Q Consensus 393 ~l~~l~ 398 (1167)
.+..+.
T Consensus 443 ~L~~~~ 448 (457)
T 1xm9_A 443 LLSDMW 448 (457)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 776554
No 72
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.79 E-value=0.00051 Score=82.43 Aligned_cols=544 Identities=11% Similarity=0.124 Sum_probs=288.6
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHH
Q 001062 110 TIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKK 189 (1167)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~ 189 (1167)
.++..++..+...++++.|-.++.. .+ +. -...-+.++..++.+|+..+.+ ..-++..+.. ....+.||.-
T Consensus 119 ~l~~~~~~~~~~~~ll~~~~~~~~~----~~-~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~~~--~~~~~~~~~~ 189 (778)
T 3opb_A 119 VFVGCFSNKDATIALLNELQIRIHY----GE-DT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKELIL--RISEDEVKSM 189 (778)
T ss_dssp HHHTTCCSGGGGHHHHHHHHHHHHH----TC-SS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHHHT--TTTCHHHHHH
T ss_pred eecccCCCHHHHHHHHHHHHHHhhc----CC-Cc-chhHHHHHHHHHHHHcCccccc-hhhHHHHhcc--ccChhhhHHH
Confidence 3444444434444555555444422 21 22 3456778889999999987754 5555555544 3345689999
Q ss_pred HHHHHHHHHhhcCHHH---HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhc-ch-hhhHHHHHHHhhhcC
Q 001062 190 SVSCIASLASSLSDDL---LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGP-HL-GDTVPVLIDYCTSAS 264 (1167)
Q Consensus 190 a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p-~l-~~lvp~l~~~l~~~~ 264 (1167)
+...+..+-...+++. |..++..++-.-..... .+....++.++.++.-..|.-... |+ ...+|.+...+...
T Consensus 190 ~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~-~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~- 267 (778)
T 3opb_A 190 MLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVG-NDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEE- 267 (778)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCC-CccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcc-
Confidence 9999888887776543 44444433321122211 233445666666655544443222 11 23455555555331
Q ss_pred CCChhHHHHHHHHHHHHHHhCCccccccH-HHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcch
Q 001062 265 ENDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW 343 (1167)
Q Consensus 265 e~~~e~re~al~~l~~l~~~~~~~~~~~l-~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw 343 (1167)
.+.++..++++.+...+.. +..+.|+ +..++.+...++. +
T Consensus 268 -~~~~~~~a~L~lLsaACi~--~~cR~~I~~~~~~~L~~~l~~---------------------------------~--- 308 (778)
T 3opb_A 268 -QDLQFTKELLRLLSSACID--ETMRTYITENYLQLLERSLNV---------------------------------E--- 308 (778)
T ss_dssp -CCHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHTTS---------------------------------G---
T ss_pred -cchHHHHHHHHHHHHHhCC--cHHHHHHHHhHHHHHHHHhcc---------------------------------H---
Confidence 4455555565555443321 2233332 2233333333320 0
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHH
Q 001062 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQE 423 (1167)
Q Consensus 344 ~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~ 423 (1167)
.+|..|+-+|..+....... ..-...+.+.+.+.+.......+.-++++++.+-.... -...+...
T Consensus 309 ~ir~lAavvL~KL~~~~~~~-~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-------------VKe~L~~d 374 (778)
T 3opb_A 309 DVQIYSALVLVKTWSFTKLT-CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-------------VKIMIRSN 374 (778)
T ss_dssp GGHHHHHHHHHHHTGGGTCT-TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-------------HHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCCC-cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-------------HHHHHHhC
Confidence 56777777776665432110 00122344455555544333336677777766532110 00122222
Q ss_pred HHHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHhcCchh--HhhhhhhHHHHHHhccc--CCCCchHHHHHHHH-HHHHh
Q 001062 424 VSKIVKSINRQLRE-KSIKTKVGAFSVLRELVVVLPDCL--ADHIGSLIPGIEKSLND--KSSTSNLKIEALTF-TRLVL 497 (1167)
Q Consensus 424 ~~~l~~~l~~~L~~-~~~~~r~~~~~~l~~l~~~~~~~l--~~~l~~l~~~l~~~l~d--~~~~~~~~~~al~~-l~~l~ 497 (1167)
+..++.+.+.++. ....+.-+++.+|..+....+..- .+.+..+-+......-+ +........+...- -+..+
T Consensus 375 -~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 375 -ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp -HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 5667778888874 445566677777777766544211 01122222111111000 00000011111111 11222
Q ss_pred ccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccch-HHHHHHHHHHhhcCCCC-H
Q 001062 498 SSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYV-QPIYNAIMSRLTNQDQD-Q 575 (1167)
Q Consensus 498 ~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l-~~l~~~ll~~l~~~d~~-~ 575 (1167)
-. ...+|.+...+...+..++..|.+++..+... ...+ ...+ +..++.+++.+.+.... .
T Consensus 454 ~e----------aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R-------~~lvqqGal~~LL~lL~s~~~~~~ 515 (778)
T 3opb_A 454 LR----------TELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI-------PQLAQQGAVKIILEYLANKQDIGE 515 (778)
T ss_dssp TT----------TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH-------HHHHHTTHHHHHHHHTTCC---CC
T ss_pred HH----------CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH-------HHHHHCCCHHHHHHHHhcCCCcch
Confidence 11 12577778888888889999999999999753 1110 0111 24566667777543221 2
Q ss_pred HHHHHHHHHHHHHHHhcCc--ccccc-hhhhHHHHHHhhcC--ch--------------hhHHHHHHHHHHhcCCCC--C
Q 001062 576 EVKECAISCMGLVISTFGD--NLGAE-LPACLPVLVDRMGN--EI--------------TRLTAVKAFAVIAASPLH--I 634 (1167)
Q Consensus 576 ~vr~~Ai~alg~l~~~~g~--~l~~~-~~~~l~~L~~~L~~--e~--------------~r~~a~~al~~i~~~~~~--~ 634 (1167)
++|..|+.+++.+...... .|..+ ....+|.|++-|.. +. .+..|+.||++++..+.. .
T Consensus 516 ~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E 595 (778)
T 3opb_A 516 PIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGE 595 (778)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccch
Confidence 4899999999999865421 12111 12677888877662 11 156899999999965311 1
Q ss_pred ch-hhHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCC---CCC-hh--hHHHHHHHHhhhcCCCchhhHHHHH
Q 001062 635 DL-TCVLE--HVIAELTAFLRKANRALRQATLGTMNSLVVAYGD---KIG-AS--AYEVIIVELSTLISDSDLHMTALAL 705 (1167)
Q Consensus 635 ~~-~~~~~--~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~---~~~-~~--~~~~~l~~l~~~l~~~d~~~~~~al 705 (1167)
+. ..++. ..++.|..++.+++..+|.+|+++++.++.+... .+- .. .-..=+..+..++..+|..++.+|.
T Consensus 596 ~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAa 675 (778)
T 3opb_A 596 EVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVA 675 (778)
T ss_dssp HHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHH
Confidence 12 33554 4888999999889999999999999999974431 121 11 0011255667778888999999998
Q ss_pred HHHHHHhhcccCCCchhhhhh--hchHHHHHHHhhh
Q 001062 706 ELCCTLMADKRSSPNVGLAVR--NKVLPQALALIKS 739 (1167)
Q Consensus 706 ~~l~~l~~~~~~~p~~~~~~~--~~~l~~l~~ll~~ 739 (1167)
.+|+.+... .|.....+. ...++.++.+++.
T Consensus 676 gALAnLts~---~~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 676 AIFANIATT---IPLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHHHHH---CHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCC---ChHHHHHHHHccccHHHHHHHHhc
Confidence 999888654 343222222 2466666666655
No 73
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.78 E-value=5.5e-08 Score=100.41 Aligned_cols=187 Identities=16% Similarity=0.165 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhH
Q 001062 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1167)
Q Consensus 42 ~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~ 121 (1167)
.......+.+++.|+|+++.||..|+.+|+.+.. + ..++.|...+.+++..+|..+..+|..+- .
T Consensus 10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~---~----~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----~---- 74 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD---E----RAVEPLIKALKDEDAWVRRAAADALGQIG----D---- 74 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC---G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C----
T ss_pred ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC---h----hHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C----
Confidence 3446778889999999999999999999997653 1 34566667777788888888888887642 1
Q ss_pred HHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 001062 122 QSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSL 201 (1167)
Q Consensus 122 ~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~ 201 (1167)
...+|.|...|.++ ++.+|..++..|+.+- . +..++.+...+.++++.||..|+.+++.+..
T Consensus 75 ----~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~----~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDE--DGWVRQSAAVALGQIG----D------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC----C------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred ----HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC----c------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 13456777777765 6899999999998752 2 2245556677788999999999999999864
Q ss_pred CHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 001062 202 SDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESF 281 (1167)
Q Consensus 202 ~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l 281 (1167)
...++.+...+.+++ ..+|..++.+++.+.. +..++.+...+++ .++.+|..+.+++..+
T Consensus 137 -----~~~~~~L~~~l~d~~--~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDED--GWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVNYLETH 196 (201)
T ss_dssp -----GGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 234566677777654 4789999999888721 4577888888887 7899999999888754
No 74
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.77 E-value=3.8e-08 Score=102.53 Aligned_cols=188 Identities=15% Similarity=0.135 Sum_probs=139.4
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHH
Q 001062 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSI 124 (1167)
Q Consensus 45 ~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~ 124 (1167)
+..++.+++.|.|+++.||..|+.+|+.+.. ...++.|...+.+++..+|..+..+|..+-.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----------
Confidence 4557788889999999999999999998753 2345666777778877888888888876431
Q ss_pred HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH
Q 001062 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1167)
Q Consensus 125 ~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1167)
...+|.|...|.++ ++.+|..++..|+.+- . +..++.+.+.+.++++.||..|+.+|+.+...
T Consensus 80 -~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~----~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---- 142 (211)
T 3ltm_A 80 -ERAVEPLIKALKDE--DGWVRQSAAVALGQIG----D------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---- 142 (211)
T ss_dssp -GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC----C------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred -HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC----c------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH----
Confidence 13456777777765 6899999999998662 2 23456667777889999999999999998642
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 001062 205 LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 205 ~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~ 284 (1167)
..++.+...+.+++ ..+|..++.+++.+.. +..++.+...+++ +++++|..|.++|..+-..
T Consensus 143 ---~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 143 ---RAVEPLIKALKDED--GWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp ---GGHHHHHHHTTCSS--HHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHcCCC--HHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCC
Confidence 34566677776654 4789899988887732 5678888888888 8899999999998876554
Q ss_pred C
Q 001062 285 C 285 (1167)
Q Consensus 285 ~ 285 (1167)
.
T Consensus 205 ~ 205 (211)
T 3ltm_A 205 N 205 (211)
T ss_dssp -
T ss_pred C
Confidence 3
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.76 E-value=8.8e-07 Score=83.43 Aligned_cols=216 Identities=14% Similarity=0.156 Sum_probs=161.3
Q ss_pred HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCH
Q 001062 125 HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSD 203 (1167)
Q Consensus 125 ~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~ 203 (1167)
-+.++..++..|.+. -|.|+..|+.++..+++...... ..++..++..++.++ .........++|.++..-++
T Consensus 30 d~~~l~~lI~~LDDD--lwtV~kNAl~vi~~i~~~~~el~----epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDD--LWTVVKNAISIIMVIAKTREDLY----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCGGGH----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccH--HHHHHHhHHHHHHHHHHHhHHHH----HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 345566666666653 69999999999999998887754 445555555554433 36666778889998876644
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 001062 204 DLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLL 283 (1167)
Q Consensus 204 ~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~ 283 (1167)
....++|.+....+-. +...|...-.+++.|++..|.- ++.++.-+...+++ .|++-|-+++.+++.+-.
T Consensus 104 -~v~~vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l----~~~v~rdi~smlts---kd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 104 -LVKSMIPVLFANYRIG--DEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSS---KNREDKLTALNFIEAMGE 173 (253)
T ss_dssp -HHHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSC---SSHHHHHHHHHHHHTCCT
T ss_pred -HHHhhHHHHHHHHhcC--CccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcC---CChHHHHHHHHHHHHHhc
Confidence 6789999999988765 3467777788999999987654 35566667777776 667778889988888877
Q ss_pred hCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChh
Q 001062 284 RCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEM 363 (1167)
Q Consensus 284 ~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~ 363 (1167)
+-++.+.||+|.++.++ ||.| --||.+|+.+|..+....|.
T Consensus 174 n~~~yv~PfLprL~aLL-----~D~d---------------------------------eiVRaSaVEtL~~lA~~npk- 214 (253)
T 2db0_A 174 NSFKYVNPFLPRIINLL-----HDGD---------------------------------EIVRASAVEALVHLATLNDK- 214 (253)
T ss_dssp TTHHHHGGGHHHHHGGG-----GCSS---------------------------------HHHHHHHHHHHHHHHTSCHH-
T ss_pred cCccccCcchHHHHHHH-----cCcc---------------------------------hhhhHHHHHHHHHHHHcCHH-
Confidence 77788899999988754 2211 17999999999999988874
Q ss_pred hHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHH
Q 001062 364 LSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVR 399 (1167)
Q Consensus 364 l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~ 399 (1167)
+..++-..++.|+|+.+-|...+-.+++.+.-
T Consensus 215 ----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 215 ----LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp ----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 44555555678999999999888888877654
No 76
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.76 E-value=1.9e-06 Score=101.74 Aligned_cols=361 Identities=12% Similarity=0.098 Sum_probs=226.5
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHH-
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV- 83 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~- 83 (1167)
.|..+++.+.+.|+++++.|...|.+...........-.....++.|++.|.+++.+||..|+.+|..|+..-.++.-.
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 4778899999999999999999887665421100000111234789999999999999999999999998531122211
Q ss_pred ----HHHHHHHHHhcC-CCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhc----------------cCCC
Q 001062 84 ----EMTDKLCIKLLN-GKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITL----------------KDMN 142 (1167)
Q Consensus 84 ----~l~~~L~~~~~~-~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~----------------~~~~ 142 (1167)
..++.|...+.+ .+.++++.++.+|..+... +. .-..+++.-+|.|++.+.. ...+
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~--~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DS--IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GG--GHHHHHHHTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-ch--hhHHHHhccHHHHHHHHhccccccccccccccccccccc
Confidence 247777777775 4556788888888887652 22 2233444557777765410 0113
Q ss_pred hhHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHhhhhcC------ChHHHHHHHHHHHHHHHhhcCHH---------
Q 001062 143 TEIRCECLDILCDVLHKFGN---LMSNDHERLLSALLPQLSA------NQASVRKKSVSCIASLASSLSDD--------- 204 (1167)
Q Consensus 143 ~~v~~~~~~~L~~l~~~~g~---~l~~~~~~l~~~ll~~l~~------~~~~vrk~a~~~l~~l~~~~~~~--------- 204 (1167)
..|+..+..+|..+...... .+. ...-+++.|+..+.+ .+....+.|+-+|..|+.....+
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~-~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLR-ECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHH-HSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-HcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 67899999999888653211 111 111233344444332 33467888888887777442111
Q ss_pred -------------------HH-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHh---hhhhhcch--hhhHHHHHHH
Q 001062 205 -------------------LL-AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAV---GYRFGPHL--GDTVPVLIDY 259 (1167)
Q Consensus 205 -------------------~~-~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~p~l--~~lvp~l~~~ 259 (1167)
++ ...++.++..+++.. +...++.++.++..++... +..+...+ ...+|.+...
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~-~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK-TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 01 234667777776543 3578899999999998642 11222222 3568999999
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCC
Q 001062 260 CTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDE 339 (1167)
Q Consensus 260 l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~ddd 339 (1167)
+.. .++++++.+.+++..+.... ..-..+-...++.+..++..... . . .-
T Consensus 364 L~s---~~~~v~~~A~~aL~nLs~~~-~~~~~I~~g~ip~LV~LL~~~~~-~---------~----------------~~ 413 (584)
T 3l6x_A 364 LTN---EHERVVKAASGALRNLAVDA-RNKELIGKHAIPNLVKNLPGGQQ-N---------S----------------SW 413 (584)
T ss_dssp GGC---SCHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSSSSC-S---------G----------------GG
T ss_pred HcC---CCHHHHHHHHHHHHHHhCCh-hHHHHHHhCCHHHHHHHhcCCcc-c---------c----------------cc
Confidence 988 78899999999999998643 22122334566666666652100 0 0 00
Q ss_pred CcchHHHHHHHHHHHHHHhcCChhhHHHH-HHHhhHHHhhhccC--ChhHHHHHHHHHHHHHHh
Q 001062 340 DASWKVRRAAAKCLAALIVSRPEMLSKLY-EEACPKLIDRFKER--EENVKMDVFNTFIELVRQ 400 (1167)
Q Consensus 340 d~sw~vR~aA~~~l~~li~~~~~~l~~~~-~~i~p~L~~~l~d~--~~~vr~~~~~~l~~l~~~ 400 (1167)
..+-.++..|+.+|+.++...++.-..+. ...+|.|++.++.. .+.++..+..++..+..+
T Consensus 414 ~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 414 NFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 01226788899999988877665433332 34678888777654 778888888888777654
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.74 E-value=1.2e-07 Score=97.76 Aligned_cols=183 Identities=14% Similarity=0.145 Sum_probs=137.4
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHH
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVV 83 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~ 83 (1167)
.....+++.+.++|+++|..|...|.+.-. ...++.+++.|.|+++.||..|+.+|+.+.. +
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---~---- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---E---- 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---G----
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---H----
Confidence 456789999999999999999999975321 2457788899999999999999999998742 2
Q ss_pred HHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 001062 84 EMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNL 163 (1167)
Q Consensus 84 ~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~ 163 (1167)
..++.|...+.++++.+|..+..+|..+-. ...+|.|...+.++ ++.||..++.+|+.+- .
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~----~- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG----D- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHT----C-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC----C-
Confidence 345666667778888889988888876421 12456677777665 6899999999998762 1
Q ss_pred hhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001062 164 MSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGAL 237 (1167)
Q Consensus 164 l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l 237 (1167)
+..++.+...+.++++.||..|+.+|+.+.. + ..++.+...+.+++ ..+|..+..+++.+
T Consensus 137 -----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~----~~~~~L~~~l~d~~--~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG---E----RVRAAMEKLAETGT--GFARKVAVNYLETH 196 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H----HHHHHHHHHHHHCC--HHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h----hHHHHHHHHHhCCC--HHHHHHHHHHHHHH
Confidence 2345667777888889999999999998842 2 34555566666654 47888888888765
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.74 E-value=2.8e-07 Score=95.86 Aligned_cols=188 Identities=19% Similarity=0.169 Sum_probs=142.1
Q ss_pred hHHHHHHHHHhhcCCCCchHHHHHHHHHHhhhhccCCCCCccchHHHHHHhcCCChhhHHHHHHHHHHhhhhcCcccchH
Q 001062 810 SSTVKMLTDILKDDSSTNSAKQHLALLCLGEIGRRKDLSSHEHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLP 889 (1167)
Q Consensus 810 ~~~~~~l~~~l~~~~~~~~~~~~lal~~Lgei~~~~~~~~~~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~~~lp 889 (1167)
+..++.++..+.+ .++..|..++..||.++. +...+.++++++++++.+|..|+.+||.+.. ...+|
T Consensus 18 ~~~~~~L~~~L~~---~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---~~~~~ 84 (211)
T 3ltm_A 18 PEKVEMYIKNLQD---DSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---ERAVE 84 (211)
T ss_dssp GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---GGGHH
T ss_pred HhHHHHHHHHHcC---CCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---HHHHH
Confidence 4567778877765 467888999999998764 3567889999999999999999999998752 46789
Q ss_pred HHHHHhhc-ccchhHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHhhccCCccchhhHHHHHhhhccccCcccchHH
Q 001062 890 FILDQIDN-QQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPA 968 (1167)
Q Consensus 890 ~l~~~l~~-~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~~~~~lp~ 968 (1167)
.+++.+.+ ++..|..++.+|+.+... ..++.|.+...+++..+|..++.+||++. ....+|.
T Consensus 85 ~L~~~l~~~~~~vr~~a~~aL~~~~~~--------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~~~~~~~ 147 (211)
T 3ltm_A 85 PLIKALKDEDGWVRQSAAVALGQIGDE--------------RAVEPLIKALKDEDWFVRIAAAFALGEIG---DERAVEP 147 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCG--------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCcH--------------HHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CHHHHHH
Confidence 99998876 566788888888876311 12334445555677889999999999984 2457899
Q ss_pred HHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCc
Q 001062 969 LKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKP 1037 (1167)
Q Consensus 969 l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~~~p 1037 (1167)
|.+.++++++.+|..++.++..+-. ...++.+...++|++..||..|..+|..+..+.+
T Consensus 148 L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 148 LIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 9999999899999999999886521 1345556677889999999999999998765544
No 79
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.73 E-value=4.1e-07 Score=95.23 Aligned_cols=181 Identities=16% Similarity=0.188 Sum_probs=146.0
Q ss_pred HHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHHhhhhc------
Q 001062 8 AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL----DDVAGDVSGLAVKCLAPLVKKV------ 77 (1167)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L----~d~~~~Vr~~A~~~l~~l~~~~------ 77 (1167)
.+..+|-+.|...|..|+..|...++. ++...-..++.+++.+ .|+|..|...+...+..++..+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345566777888889999999998864 2344455566667654 4999999999999999887544
Q ss_pred -ChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHH
Q 001062 78 -SEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDV 156 (1167)
Q Consensus 78 -~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l 156 (1167)
.+.....++|.|...+.++++.+|+.+-..++.+..-.|+ ..+.+.+++++.++ ++.+|.++++.++.+
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~--------~~v~~~l~~g~ksK--N~R~R~e~l~~l~~l 194 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP--------LKMTPMLLDALKSK--NARQRSECLLVIEYY 194 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHGGGCS--CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHccC--CHHHHHHHHHHHHHH
Confidence 3334678899999999999999999998888888776665 46788889999775 699999999999999
Q ss_pred HHHhccchhHHHHHHH---HHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHH
Q 001062 157 LHKFGNLMSNDHERLL---SALLPQLSANQASVRKKSVSCIASLASSLSDDLLA 207 (1167)
Q Consensus 157 ~~~~g~~l~~~~~~l~---~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~ 207 (1167)
+..+|.... ..+ +.+.+.+.+++..||..|+.|+..+-.+.|+.++.
T Consensus 195 i~~~G~~~~----~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k 244 (266)
T 2of3_A 195 ITNAGISPL----KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWK 244 (266)
T ss_dssp HHHHCSGGG----GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHhcCCCcc----ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999998732 245 88899999999999999999999998888887654
No 80
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.72 E-value=2.1e-07 Score=101.40 Aligned_cols=190 Identities=14% Similarity=0.103 Sum_probs=138.2
Q ss_pred CCcchHHHHHHHHHHHHHHhcCChhhH-----HHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCC
Q 001062 339 EDASWKVRRAAAKCLAALIVSRPEMLS-----KLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNE 413 (1167)
Q Consensus 339 dd~sw~vR~aA~~~l~~li~~~~~~l~-----~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~ 413 (1167)
.+..||.|..|...+..++...+.... ..|....+.+.+.++|.+-.|...++.++..++...+...
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~-------- 90 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS-------- 90 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-----------
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh--------
Confidence 567899999999999888876542211 1244455566667899999999999999999987654210
Q ss_pred CchHHHHHHHHHHHHHHHHH-HhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHH
Q 001062 414 LNPRWLLKQEVSKIVKSINR-QLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTF 492 (1167)
Q Consensus 414 ~~p~~~l~~~~~~l~~~l~~-~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~ 492 (1167)
+........+..+++.+.. .+.+....+|..++.++..+++.... ...+++.+...+..+ ++.++.+++.+
T Consensus 91 -~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~K--npkv~~~~l~~ 162 (278)
T 4ffb_C 91 -LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKK--LPKLIAAAANC 162 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCS--CHHHHHHHHHH
T ss_pred -cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhcc--CHHHHHHHHHH
Confidence 0112344556777776665 47788888999998888888764322 344566777788777 57899999999
Q ss_pred HHHHhccCCCCch--hhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 001062 493 TRLVLSSHSPPVF--HPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1167)
Q Consensus 493 l~~l~~~~~~~~~--~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1167)
+..++..++.... .+.++.+++.+.++++|.++.||.+|..+++.+.+.+|+
T Consensus 163 l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 9999987665544 457788999999999999999999999999999988875
No 81
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.64 E-value=6.6e-05 Score=92.41 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHH-HHhcCCCChhHHHHHHHHHHHhhhhcChhhH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIV-VQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV 82 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~l-l~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~ 82 (1167)
.|..++++++++|++.|.+|+..|.+.++.....- --..+.++..+ -++|.|++.+||..|..+|..|+..-+.+.+
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~-l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRK-LLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHH-HHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHH-HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 35678999999999999999999999886432110 01223345544 4679999999999999999999866554433
No 82
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.63 E-value=3e-07 Score=95.59 Aligned_cols=191 Identities=17% Similarity=0.125 Sum_probs=137.5
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhh--H-
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPR--V- 82 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~--~- 82 (1167)
...+..-+.+.|+++|..|+..|.+...........-.....++.+++.|.+++++||..|+.+|+.++..-.+.. +
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3456666789999999999999988764321100111222468999999999999999999999999985332211 1
Q ss_pred -HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc
Q 001062 83 -VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 83 -~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
...++.|...+.+++..+|..++.+|..++...+.. ...-+-..++|.|++.+.++ +..++..++.+|..++....
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCH
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHH-HHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCc
Confidence 125788888888888889999999999988643321 11112245789999988875 58999999999999986533
Q ss_pred cchhH-HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHh
Q 001062 162 NLMSN-DHERLLSALLPQLSANQASVRKKSVSCIASLAS 199 (1167)
Q Consensus 162 ~~l~~-~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~ 199 (1167)
..... .....++.+.+.+.++++.+|+.|..+|+.++.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 22111 122467888888888889999999999998864
No 83
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.55 E-value=1.1e-05 Score=93.04 Aligned_cols=303 Identities=14% Similarity=0.105 Sum_probs=192.0
Q ss_pred ChhHHhHhHHHHHHHhcccccCCChHHHHHHH----------HHHHHhcCCCC--hh-----HHH-------HHHHHHHH
Q 001062 17 DKDFRYMATSDLLNELNKESFKADADLEVKLS----------NIVVQQLDDVA--GD-----VSG-------LAVKCLAP 72 (1167)
Q Consensus 17 d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~----------~~ll~~L~d~~--~~-----Vr~-------~A~~~l~~ 72 (1167)
|++.||-|...|.+.........+...+..++ +.+++.+..++ .+ |+. +|+.+|+.
T Consensus 95 ~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~n 174 (458)
T 3nmz_A 95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 174 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHH
Confidence 47999999999999998654333333344444 66667776553 23 544 99999998
Q ss_pred hhhhcChhh---H--HHHHHHHHHHhcC-----------CCcchhcHHHHHHHHHHhhcCCchhHHHH--HHHHHHHHHH
Q 001062 73 LVKKVSEPR---V--VEMTDKLCIKLLN-----------GKDQHRDIASIALKTIIAEVTTSSLAQSI--HTSLTPQLTK 134 (1167)
Q Consensus 73 l~~~~~~~~---~--~~l~~~L~~~~~~-----------~~~~~r~~a~~aL~~~~~~~~~~~~~~~~--~~~i~p~Ll~ 134 (1167)
++.. ++. + ...++.|...+.. .+..++..++.+|..++.+-+. ....+ ....+|.|+.
T Consensus 175 ls~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~--~k~~i~~~~GaIp~LV~ 250 (458)
T 3nmz_A 175 LSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA--NKATLCSMKGCMRALVA 250 (458)
T ss_dssp HTTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHCHHHHHHHHH
T ss_pred hcCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc--cHHHHHHcCCcHHHHHH
Confidence 8643 211 1 1234555555421 1234677888999998865432 11223 2456899999
Q ss_pred hhhccCCChhHHHHHHHHHHHHHHHhccchhHH--HHHHHHHHhhhh-cCChHHHHHHHHHHHHHHHhhcCHH--HH---
Q 001062 135 GITLKDMNTEIRCECLDILCDVLHKFGNLMSND--HERLLSALLPQL-SANQASVRKKSVSCIASLASSLSDD--LL--- 206 (1167)
Q Consensus 135 ~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~--~~~l~~~ll~~l-~~~~~~vrk~a~~~l~~l~~~~~~~--~~--- 206 (1167)
.|.++ +++++..++.+|..+........... ....++.|++.| .+++..+++.|+.++..++.+..+. .+
T Consensus 251 LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~ 328 (458)
T 3nmz_A 251 QLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 328 (458)
T ss_dssp GGGCS--CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHS
T ss_pred HHhCC--CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence 99864 58999999999998864211111011 112355666653 4556789999999999999854332 22
Q ss_pred HHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHHHH---Hhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 001062 207 AKATIEVVRNLRSKGAK--PEMIRTNIQMVGALSR---AVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALES 280 (1167)
Q Consensus 207 ~~l~~~l~~~l~~~~~~--~~~r~~~~~~l~~l~~---~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~al~~l~~ 280 (1167)
...++.++..+.+.... .+.++.++.++..++. ..+..-.... ...+|.+++.+.. .+.++++.|.+++..
T Consensus 329 ~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~---~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSNACGTLWN 405 (458)
T ss_dssp TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC---SCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC---CChHHHHHHHHHHHH
Confidence 24678888888765431 1478888888888886 2222111111 3578889998887 778899999999999
Q ss_pred HHHhCCccccccH-HHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhc
Q 001062 281 FLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVS 359 (1167)
Q Consensus 281 l~~~~~~~~~~~l-~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~ 359 (1167)
+....++...... ...++.+..++.. .+.++|+.|+.+|..+...
T Consensus 406 La~~~~~~~~~i~~~G~I~~Lv~LL~s----------------------------------~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 406 LSARNPKDQEALWDMGAVSMLKNLIHS----------------------------------KHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHSSCHHHHHHHHHHTHHHHHHTTTTC----------------------------------SSHHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhC----------------------------------CCHHHHHHHHHHHHHHHcC
Confidence 9865443322222 2345666655531 1238999999999999987
Q ss_pred CCh
Q 001062 360 RPE 362 (1167)
Q Consensus 360 ~~~ 362 (1167)
.|.
T Consensus 452 ~p~ 454 (458)
T 3nmz_A 452 RPA 454 (458)
T ss_dssp CSC
T ss_pred CHh
Confidence 774
No 84
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.50 E-value=5.7e-06 Score=89.82 Aligned_cols=178 Identities=12% Similarity=0.068 Sum_probs=128.4
Q ss_pred hHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHH-hcCCCChhHHHHHHHHHHHhhhhcChh---hHH-HHHHHHHHHh
Q 001062 19 DFRYMATSDLLNELNKESFKADADLEVKLSNIVVQ-QLDDVAGDVSGLAVKCLAPLVKKVSEP---RVV-EMTDKLCIKL 93 (1167)
Q Consensus 19 d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~-~L~d~~~~Vr~~A~~~l~~l~~~~~~~---~~~-~l~~~L~~~~ 93 (1167)
+-|.+|+..|...+...... ..=.....++.++. +|.+++++||..|+.|||.++..-+.. .+. ..++.|...+
T Consensus 55 e~k~~Al~~L~~lv~~~dna-~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhH-HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 67889999998887642100 00011234678888 999999999999999999998643221 111 3577888777
Q ss_pred cC-CCcchhcHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHH-HHH
Q 001062 94 LN-GKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND-HER 170 (1167)
Q Consensus 94 ~~-~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~-~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~-~~~ 170 (1167)
.+ ++..+|..++.||..++.+.++. ...+. ...+|.|+..|.++ +..++..++.+|+.++.......... ...
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~--~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g 209 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAG--LLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 209 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHH--HHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 74 46678999999999999766542 22222 35788888888765 68999999999999998744332211 224
Q ss_pred HHHHHhhhhcCChHHHHHHHHHHHHHHHhhc
Q 001062 171 LLSALLPQLSANQASVRKKSVSCIASLASSL 201 (1167)
Q Consensus 171 l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~ 201 (1167)
.++.+...|.++++.+|..|+.+|+.++...
T Consensus 210 ~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 210 MVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 6788888888888899999999999999874
No 85
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.50 E-value=9.7e-07 Score=91.65 Aligned_cols=180 Identities=16% Similarity=0.132 Sum_probs=131.8
Q ss_pred cchHHHHHHhcCCChhhHHHHHHHHHHhhhhcCcc--------cchHHHHHHhhc-ccchhHHHHHHHHHHHhhccccch
Q 001062 851 EHIENVIIESFQSPFEEIKSAASYALGNIAVGNLS--------KFLPFILDQIDN-QQKKQYLLLHSLKEVIVRQSVDKA 921 (1167)
Q Consensus 851 ~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~--------~~lp~l~~~l~~-~~~~~~~~l~aLkei~~~~~~~~~ 921 (1167)
+...+.+.++++++++++|..|+.+|++++.++.. ..+|.+++.+.+ ++..+..++.+|+.+.......
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-- 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-- 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH--
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH--
Confidence 34578888999999999999999999998865433 257888888876 4556777888888776432210
Q ss_pred hhhhHHH-HHHHHHHHhhccCCccchhhHHHHHhhhccccCc--------ccchHHHHHhhcCCChhhHHHHHHHHHHHh
Q 001062 922 EFQDSSV-EKILNLLFNHCESEEEGVRNVVAECLGKIALIEP--------AKLVPALKVRTTSSAAFTRATVVIAIKYSI 992 (1167)
Q Consensus 922 ~~l~~~~-~~i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~~--------~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~ 992 (1167)
...+. ...++.|.+...+++..+|..++.+|++++..++ ...+|.|.+.++++++..|..++.++..+.
T Consensus 89 --~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 89 --IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp --HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 01111 1245667777777778899999999999997554 257899999999888999999999999887
Q ss_pred ccCChhhhhhhh-HhHHHHHhhccCCChHHHHHHHHHHHHHHh
Q 001062 993 VERPEKIDEIIF-PEISSFLMLIKDQDRHVRRAAVLALSTFAH 1034 (1167)
Q Consensus 993 ~~~~~~~~~~l~-~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~ 1034 (1167)
............ ..++.++..+++++.++|..|..+|..++.
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 764422111111 357788889999999999999999988764
No 86
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.48 E-value=9.5e-05 Score=85.21 Aligned_cols=312 Identities=15% Similarity=0.164 Sum_probs=187.1
Q ss_pred cchhcHHHHHHHHHHhhcCCchhH------HHHH---HHHHHHHHHhhhccCCChh-----HHH-------HHHHHHHHH
Q 001062 98 DQHRDIASIALKTIIAEVTTSSLA------QSIH---TSLTPQLTKGITLKDMNTE-----IRC-------ECLDILCDV 156 (1167)
Q Consensus 98 ~~~r~~a~~aL~~~~~~~~~~~~~------~~~~---~~i~p~Ll~~l~~~~~~~~-----v~~-------~~~~~L~~l 156 (1167)
.+.|.-++-||.+++..-|..... .+.+ ..-.|.+++.++.+..+.+ +++ .|+.+|..+
T Consensus 96 ~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nl 175 (458)
T 3nmz_A 96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 175 (458)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHh
Confidence 367778889999998887764100 0111 1112344444443310111 443 566666655
Q ss_pred HHHhccchhHHH--HHHHHHHhhhhc-----------CChHHHHHHHHHHHHHHHhhcCHH--HH---HHHHHHHHHHhh
Q 001062 157 LHKFGNLMSNDH--ERLLSALLPQLS-----------ANQASVRKKSVSCIASLASSLSDD--LL---AKATIEVVRNLR 218 (1167)
Q Consensus 157 ~~~~g~~l~~~~--~~l~~~ll~~l~-----------~~~~~vrk~a~~~l~~l~~~~~~~--~~---~~l~~~l~~~l~ 218 (1167)
... ....... ...++.|+..+. ++++.+++.|+.+|..++..-++. .+ ...++.++..++
T Consensus 176 s~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~ 253 (458)
T 3nmz_A 176 SFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 253 (458)
T ss_dssp TTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG
T ss_pred cCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh
Confidence 221 1111110 112344444442 123589999999999999654322 23 456899999998
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhhhhhcch--hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccH--H
Q 001062 219 SKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYC--D 294 (1167)
Q Consensus 219 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l--~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l--~ 294 (1167)
+++ .+.++.++.++..++..........+ ...+|.+++.+... .++++++.++.++.++...++..-..+. .
T Consensus 254 s~~--~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s--~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~ 329 (458)
T 3nmz_A 254 SES--EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV--KKESTLKSVLSALWNLSAHCTENKADICAVD 329 (458)
T ss_dssp CSC--HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC--CSHHHHHHHHHHHHHHHHHCHHHHHHHHHST
T ss_pred CCC--HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC--CCHHHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 653 58899999999998763111111111 35688888865331 5678999999999999876543212222 3
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHh---cCChhhHHHH-HH
Q 001062 295 EILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIV---SRPEMLSKLY-EE 370 (1167)
Q Consensus 295 ~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~---~~~~~l~~~~-~~ 370 (1167)
..++.+.+.+.+... ..++++++.|+.+|..+.. ..++....+. ..
T Consensus 330 Gal~~Lv~LL~~~~~------------------------------~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G 379 (458)
T 3nmz_A 330 GALAFLVGTLTYRSQ------------------------------TNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 379 (458)
T ss_dssp THHHHHHHHTTCCCS------------------------------SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CcHHHHHHHhcCCCC------------------------------cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc
Confidence 466777777653110 0123788888888887765 3443322222 23
Q ss_pred HhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH-HHHHHHHHHHhccCChhhHHHHHHH
Q 001062 371 ACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV-SKIVKSINRQLREKSIKTKVGAFSV 449 (1167)
Q Consensus 371 i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~-~~l~~~l~~~L~~~~~~~r~~~~~~ 449 (1167)
.+|.|++.++..+..++..+..++..+.... + ......+ ...++.+...|.+++.++|..+..+
T Consensus 380 ~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~--------------~-~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~A 444 (458)
T 3nmz_A 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARN--------------P-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 444 (458)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC--------------H-HHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred cHHHHHHHHcCCChHHHHHHHHHHHHHHcCC--------------H-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788998898888899999999888775211 1 1111111 2356777788888888999999999
Q ss_pred HHHHHHhcCch
Q 001062 450 LRELVVVLPDC 460 (1167)
Q Consensus 450 l~~l~~~~~~~ 460 (1167)
|..|+...|..
T Consensus 445 L~nL~~~~p~k 455 (458)
T 3nmz_A 445 LRNLMANRPAK 455 (458)
T ss_dssp HHHHHTCCSCC
T ss_pred HHHHHcCCHhh
Confidence 99998766543
No 87
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.44 E-value=1.1e-05 Score=87.66 Aligned_cols=196 Identities=13% Similarity=0.079 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHhcCCCCh------------hHHHHHHHHHHHhhhhcChhh-H--HHHHHHHHH-HhcCCCcchhcHHH
Q 001062 42 DLEVKLSNIVVQQLDDVAG------------DVSGLAVKCLAPLVKKVSEPR-V--VEMTDKLCI-KLLNGKDQHRDIAS 105 (1167)
Q Consensus 42 ~~~~~i~~~ll~~L~d~~~------------~Vr~~A~~~l~~l~~~~~~~~-~--~~l~~~L~~-~~~~~~~~~r~~a~ 105 (1167)
....+.++..++.|.||.+ +-|..|...|..++....... + ...++.|+. .+.+++..+|..|+
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa 103 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHH
Confidence 3456667777888888743 346667777777775432211 1 124677888 78888888999999
Q ss_pred HHHHHHHhhcCCchhHHHHHH-HHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHH-HHHHHHHhhhhcCCh
Q 001062 106 IALKTIIAEVTTSSLAQSIHT-SLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDH-ERLLSALLPQLSANQ 183 (1167)
Q Consensus 106 ~aL~~~~~~~~~~~~~~~~~~-~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~-~~l~~~ll~~l~~~~ 183 (1167)
.+|++++.+-+. ....+++ ..+|.|+..|.+. ++..++..++.+|+.++........... ...++.|...+.+++
T Consensus 104 ~~Lg~ia~~n~~--~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d 180 (296)
T 1xqr_A 104 QLIGTCSQNVAA--IQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 180 (296)
T ss_dssp HHHHHHHTTCHH--HHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHhCCHH--HHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC
Confidence 999999876543 2223333 5788888888753 2578999999999999976654332222 246778888888888
Q ss_pred HHHHHHHHHHHHHHHhhcCHH--HH--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh
Q 001062 184 ASVRKKSVSCIASLASSLSDD--LL--AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG 242 (1167)
Q Consensus 184 ~~vrk~a~~~l~~l~~~~~~~--~~--~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~ 242 (1167)
..+|+.|+.+|+.++...++. .+ ..+++.++..+.+++. ..++.++.+++.++...+
T Consensus 181 ~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~--~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 181 QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS--PFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCS--THHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCCh--hHHHHHHHHHHHHHhCCh
Confidence 999999999999998763322 22 2367888888887653 789999999999998744
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.40 E-value=1.2e-05 Score=84.14 Aligned_cols=179 Identities=18% Similarity=0.160 Sum_probs=138.9
Q ss_pred chHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHH
Q 001062 342 SWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLK 421 (1167)
Q Consensus 342 sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~ 421 (1167)
+||-|.+|+..|...+...++.+...++-+++++.-++.|.+.+|-..+++.+..++...... +.. ...
T Consensus 59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~---------~y~--~~~ 127 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDT---------ETP--MSQ 127 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT---------TCC--CCH
T ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc---------ccc--chH
Confidence 489999999999888887776555555556777666788999999999999988887654310 000 012
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC
Q 001062 422 QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1167)
Q Consensus 422 ~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1167)
.....+++.+...+.++..++|..+-.++..+....|. ..+++.+..++..+ +++.|.+++..+..++..+|
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~------~~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP------LKMTPMLLDALKSK--NARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhcC
Confidence 23467778888888899999999998888888765543 34677788888777 57999999999999999887
Q ss_pred CCchhhhhHhhH---HHHHHHhcCCchHHHHHHHHHHHHHHHhccC
Q 001062 502 PPVFHPYIKALS---SPVLAAVGERYYKVTAEALRVCGELVRVLRP 544 (1167)
Q Consensus 502 ~~~~~~~l~~ll---~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~ 544 (1167)
.. + ...+ |.+.+.++|++..||..|+.++.++..+.|+
T Consensus 200 ~~---~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 200 IS---P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp SG---G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CC---c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 54 2 3456 9999999999999999999999999988765
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.1e-05 Score=87.59 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=136.9
Q ss_pred HHHHhcCCChhHHhHhHHHHHHHhcccccCC-ChH---HHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChh----
Q 001062 9 ILEKITGKDKDFRYMATSDLLNELNKESFKA-DAD---LEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP---- 80 (1167)
Q Consensus 9 ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~-~~~---~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~---- 80 (1167)
+-+++.|..=..|.-|+.+|.+.++...... ++. ....+.+.+-+.+.|+|..|+..|++|+..++..+...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5678888888889999999999997633221 111 12334556667889999999999999999998765422
Q ss_pred -----hHHHHHHHHHHH-hcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHH
Q 001062 81 -----RVVEMTDKLCIK-LLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILC 154 (1167)
Q Consensus 81 -----~~~~l~~~L~~~-~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~ 154 (1167)
.+..+++.|+.. +.+++...|+.+..++-.+++..... ..++..++.++.++ ++.++.+++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-------~~~~e~l~~~l~~K--npkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-------TQSVELVIPFFEKK--LPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-------HHHHHHHGGGGGCS--CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcc--CHHHHHHHHHHHH
Confidence 245667777765 56777777888877777777654431 34456667777765 6999999999999
Q ss_pred HHHHHhccch---hHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH
Q 001062 155 DVLHKFGNLM---SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1167)
Q Consensus 155 ~l~~~~g~~l---~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1167)
.++..||... .+..+.+++.+.+.+.+.++.||..|+.+++.+-.++|+.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 9999998753 2456678888888899999999999999999999888764
No 90
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.26 E-value=3.9e-05 Score=85.67 Aligned_cols=259 Identities=11% Similarity=0.062 Sum_probs=171.2
Q ss_pred hHHhHhHHHHHHHhcccccCCChHHHHH-----HHHHHHHhcC-----------CCChhHHHHHHHHHHHhhhhcC-hhh
Q 001062 19 DFRYMATSDLLNELNKESFKADADLEVK-----LSNIVVQQLD-----------DVAGDVSGLAVKCLAPLVKKVS-EPR 81 (1167)
Q Consensus 19 d~R~mAl~dL~~~l~~~~~~~~~~~~~~-----i~~~ll~~L~-----------d~~~~Vr~~A~~~l~~l~~~~~-~~~ 81 (1167)
.....|+..|.+.-. |++..+. .++.|+..|. ..++++|..|..+|..++..-. .+.
T Consensus 47 ~~~~~A~~aL~nls~------d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF------DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp GTHHHHHHHHHHHHT------SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHHHcC------CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 445567777765443 3333333 2556666663 1357899999999999985322 111
Q ss_pred -H---HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHhhhccCCChhHHHHHHHHHHHH
Q 001062 82 -V---VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDV 156 (1167)
Q Consensus 82 -~---~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~-~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l 156 (1167)
+ ...++.|...+.+++.+++..++.+|+.+...-.. .....+. ...+|.|++.|.+.. +..++..+..+|..+
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~-~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-NSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH-HHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCH-HHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 2 24589999999888888999999999998764222 1222222 246788888754332 578899999999888
Q ss_pred HHHhccchhHH--HHHHHHHHhhhhcCChH----HHHHHHHHHHHHHHhh--cCHHHHH-----HHHHHHHHHhhcCCCC
Q 001062 157 LHKFGNLMSND--HERLLSALLPQLSANQA----SVRKKSVSCIASLASS--LSDDLLA-----KATIEVVRNLRSKGAK 223 (1167)
Q Consensus 157 ~~~~g~~l~~~--~~~l~~~ll~~l~~~~~----~vrk~a~~~l~~l~~~--~~~~~~~-----~l~~~l~~~l~~~~~~ 223 (1167)
.......-... ....++.|...+.++.. .+++.|..+|..++.+ ..++.-. ..++.+++.+++++
T Consensus 199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~-- 276 (354)
T 3nmw_A 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-- 276 (354)
T ss_dssp HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSC--
T ss_pred HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCC--
Confidence 76321110111 12356667777765443 5899999999999874 3333221 25788888888754
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcch-hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccc
Q 001062 224 PEMIRTNIQMVGALSRAVGYRFGPHL-GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS 290 (1167)
Q Consensus 224 ~~~r~~~~~~l~~l~~~~~~~~~p~l-~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~ 290 (1167)
...++.++.++..++...++.-...+ ...+|.+.+.+.. .++++|+.|.+++..+....|...+
T Consensus 277 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s---~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS---KHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC---SSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 47889999999999854333211111 3578999998887 7889999999999999988765433
No 91
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.13 E-value=4.9e-05 Score=75.43 Aligned_cols=214 Identities=12% Similarity=0.090 Sum_probs=153.2
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhc----ChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchh
Q 001062 45 VKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKV----SEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSL 120 (1167)
Q Consensus 45 ~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~----~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~ 120 (1167)
+..+..++..|+|.++.|+..|...|+.+.+.. ....+..+++.++..+.++++.+---|.-+|+.++++.|..
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-- 109 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-- 109 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC--
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC--
Confidence 447888999999999999999999999999874 44567888999988887777666667788888999998875
Q ss_pred HHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Q 001062 121 AQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASS 200 (1167)
Q Consensus 121 ~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~ 200 (1167)
..-+..+...|...+.++ ++-.++++.+.++.+ ......+.++..+...+.+.+..++..++.++..++..
T Consensus 110 -~~~y~Kl~~aL~dlik~~--~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 110 -SKTFLKAAKTLVSLLESP--DDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp -HHHHHHHHHHHHHHTTSC--CHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHHHHhcCC--CchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 122334444555555433 577899999999877 11234567778888888888899999999999999998
Q ss_pred cCHH-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhh----c-CCCChhHHHHH
Q 001062 201 LSDD-LLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTS----A-SENDEELREYS 274 (1167)
Q Consensus 201 ~~~~-~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~----~-~e~~~e~re~a 274 (1167)
.++. .+..++..+-..+++. +...++.++.++..++.. |-..++++-+...+.- . -+..+.+|+-|
T Consensus 181 S~D~~i~~~I~~eI~elL~~e--D~~l~e~aLd~Le~ils~------pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 181 SADSGHLTLILDEIPSLLQND--NEFIVELALDVLEKALSF------PLLENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp CSSCCCGGGTTTTHHHHHTCS--CHHHHHHHHHHHHHHTTS------CCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC------cccHhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 8765 5666666666667665 468999999888887764 3334444444433321 0 12456777666
Q ss_pred HHH
Q 001062 275 LQA 277 (1167)
Q Consensus 275 l~~ 277 (1167)
-..
T Consensus 253 ~~v 255 (265)
T 3b2a_A 253 KKV 255 (265)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.12 E-value=0.00061 Score=67.77 Aligned_cols=218 Identities=19% Similarity=0.231 Sum_probs=155.1
Q ss_pred hhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcccc-ccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccch
Q 001062 251 DTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDIS-SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEED 329 (1167)
Q Consensus 251 ~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~-~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~ 329 (1167)
..+..++..+.+ +|+.++..++.+++.++...|..++ ..+..+++-+.+.++. +|
T Consensus 33 ~~l~~L~~LL~d---kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~-~d-------------------- 88 (265)
T 3b2a_A 33 RALFLILELAGE---DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ-EN-------------------- 88 (265)
T ss_dssp HHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS-TT--------------------
T ss_pred hHHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc-cc--------------------
Confidence 345566666766 8899999999999999999887655 4566667766666541 00
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCcc
Q 001062 330 ESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQI 409 (1167)
Q Consensus 330 ~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 409 (1167)
+ ||---|.+|++.++..-|- -..-|..+...+.+-++++++-.+.++...++.+ +.+
T Consensus 89 ----------E---kval~A~r~L~~LLe~vpL-~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~-------- 145 (265)
T 3b2a_A 89 ----------E---KVTIKALRALGYLVKDVPM-GSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL-------- 145 (265)
T ss_dssp ----------H---HHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS--------
T ss_pred ----------h---hHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc--------
Confidence 0 8888899999999998761 2346777888888888889999999998888876 322
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHH
Q 001062 410 DNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEA 489 (1167)
Q Consensus 410 ~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~a 489 (1167)
...+.++..+...+.+++..++.+++.+|..++..-.+ ..++..++..+...|+.. ++.++.-|
T Consensus 146 ------------~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D--~~i~~~I~~eI~elL~~e--D~~l~e~a 209 (265)
T 3b2a_A 146 ------------EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD--SGHLTLILDEIPSLLQND--NEFIVELA 209 (265)
T ss_dssp ------------CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS--CCCGGGTTTTHHHHHTCS--CHHHHHHH
T ss_pred ------------cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC--HHHHHHHHHHHHHHHcCC--CHHHHHHH
Confidence 13478888999999999999999999999998765422 234777777888888765 67899999
Q ss_pred HHHHHHHhccCCCCchhhhhHhhHHHHHHHh-cCCchHHHHHH
Q 001062 490 LTFTRLVLSSHSPPVFHPYIKALSSPVLAAV-GERYYKVTAEA 531 (1167)
Q Consensus 490 l~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l-~d~~~~v~~~a 531 (1167)
+..+-.++...-.+...+-+..++..+-... -...+.++..|
T Consensus 210 Ld~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 210 LDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp HHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred HHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 9999998876444444444444433333322 22334444444
No 93
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.01 E-value=0.0011 Score=77.40 Aligned_cols=344 Identities=14% Similarity=0.165 Sum_probs=193.6
Q ss_pred HHHHHHhhhhcCCh-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcc
Q 001062 170 RLLSALLPQLSANQ-ASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPH 248 (1167)
Q Consensus 170 ~l~~~ll~~l~~~~-~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~ 248 (1167)
+.++.|..-+++.. ..-|+.|+.+|..++.-.+...-..=++.++..+++...+.+..+.++.++..+....+. .+-
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~--~~~ 98 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE--EEV 98 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc--ccc
Confidence 34444444444433 378999999999999877776656668888888888766667777777766555432111 000
Q ss_pred hhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccc
Q 001062 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEE 328 (1167)
Q Consensus 249 l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d 328 (1167)
.. .. .+...+.+++....|+.. ++-++.++.++..
T Consensus 99 -~~--------~~-----~~~~~~~~~~~~d~f~~~---------~~~i~~Ll~lL~~---------------------- 133 (651)
T 3grl_A 99 -EE--------NS-----TRQSEDLGSQFTEIFIKQ---------QENVTLLLSLLEE---------------------- 133 (651)
T ss_dssp -----------------------CHHHHHHHHHHHS---------THHHHHHHHHTTC----------------------
T ss_pred -cc--------cc-----cccchHHHHHHHHHHHcC---------CccHHHHHHHhcC----------------------
Confidence 00 00 011122345555555543 2334455555531
Q ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHH---HHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCC
Q 001062 329 DESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYE---EACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVT 405 (1167)
Q Consensus 329 ~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~---~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~ 405 (1167)
....+|..++++|..+...+|+...+..- .-+|.|++.++|+.|.+|.+++..+..+.+..
T Consensus 134 ------------~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n---- 197 (651)
T 3grl_A 134 ------------FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN---- 197 (651)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC----
T ss_pred ------------ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC----
Confidence 12389999999999999999875554322 35678999999999999999999999987653
Q ss_pred CCccCCCCCchHHHHHHHH--HHHHHHHHHHhccCCh----hhHHHHHHHHHHHHHhcCchhHhhhh--hhHHHHHHhcc
Q 001062 406 KGQIDNNELNPRWLLKQEV--SKIVKSINRQLREKSI----KTKVGAFSVLRELVVVLPDCLADHIG--SLIPGIEKSLN 477 (1167)
Q Consensus 406 ~~~~~~~~~~p~~~l~~~~--~~l~~~l~~~L~~~~~----~~r~~~~~~l~~l~~~~~~~l~~~l~--~l~~~l~~~l~ 477 (1167)
..+++.+ ...++.++..+..+.. .+.+.|+.++..|....+.. +.++. ..+|.+...|.
T Consensus 198 ------------~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN-Q~~FrEt~~i~~L~~LL~ 264 (651)
T 3grl_A 198 ------------GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN-QNFFKEGSYIQRMKPWFE 264 (651)
T ss_dssp ------------HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCGGGGGGGGC
T ss_pred ------------HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHhC
Confidence 2344332 2244555555554433 57788999999988765321 11121 12333333343
Q ss_pred cCCC--Cc---h--HHHHHHHHHHHHhccCCCC----chhhhh--HhhHHHHHHHhcCC--chHHHHHHHHHHHHHHHhc
Q 001062 478 DKSS--TS---N--LKIEALTFTRLVLSSHSPP----VFHPYI--KALSSPVLAAVGER--YYKVTAEALRVCGELVRVL 542 (1167)
Q Consensus 478 d~~~--~~---~--~~~~al~~l~~l~~~~~~~----~~~~~l--~~ll~~l~~~l~d~--~~~v~~~al~~l~~l~~~~ 542 (1167)
.+.. .+ . -.+.++.+++.++...++. .-+..+ ..+++.++..+-.. ...++.+|+.+++++++.-
T Consensus 265 ~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN 344 (651)
T 3grl_A 265 VGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGC 344 (651)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC
Confidence 2211 01 1 1234566777777643220 011111 23556666655433 4578999999999987531
Q ss_pred cCCccccCCC---CccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 001062 543 RPSVEGLGFD---FKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVIS 590 (1167)
Q Consensus 543 ~~~~~~~~~~---~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~ 590 (1167)
.......... ..|-.+.++..++..+. .....++|.+|.+|+..++.
T Consensus 345 ~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~-~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 345 QVNQDYFASVNAPSNPPRPAIVVLLMSMVN-ERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHHHHHHHHCEESSSSCEEHHHHHHHHHTC-TTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccCCCCCCcChHHHHHHHHhc-ccccHHHHHHHHHHHHHHHh
Confidence 1100000000 00111234433444443 33457899999999998764
No 94
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.99 E-value=8.4e-05 Score=82.83 Aligned_cols=231 Identities=12% Similarity=0.115 Sum_probs=150.4
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCh------hhH-HHHHHHhhH-HHhhhccC-----ChhHHHHHHHHHHHHHHhhCCCC
Q 001062 339 EDASWKVRRAAAKCLAALIVSRPE------MLS-KLYEEACPK-LIDRFKER-----EENVKMDVFNTFIELVRQTGNVT 405 (1167)
Q Consensus 339 dd~sw~vR~aA~~~l~~li~~~~~------~l~-~~~~~i~p~-L~~~l~d~-----~~~vr~~~~~~l~~l~~~~~~~~ 405 (1167)
-|.+|.+|..|+.+|+.++...+. ... .+.-.++.. .++||.|- ...||..+.++++.+ .+....
T Consensus 184 Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e- 261 (800)
T 3oc3_A 184 LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP- 261 (800)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-
T ss_pred cCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-
Confidence 456899999999999999987641 111 223333333 35777543 357999999999998 655420
Q ss_pred CCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchH
Q 001062 406 KGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNL 485 (1167)
Q Consensus 406 ~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~ 485 (1167)
-.++..+.+.+..+.|.+|++++-.+.-+.+.+. .++.+++.+..+|.|. +.++
T Consensus 262 -------------------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~-----~Ld~Vv~aVL~GL~D~--DDDV 315 (800)
T 3oc3_A 262 -------------------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE-----DKDGLCRKLVSLLSSP--DEDI 315 (800)
T ss_dssp -------------------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC-----CHHHHHHHHHHHTTCS--SHHH
T ss_pred -------------------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH-----HHHHHHHHHHhhcCCc--ccHH
Confidence 0122223345577789999999988877722222 2889999999999987 5688
Q ss_pred HHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhc--CCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHH
Q 001062 486 KIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG--ERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNA 563 (1167)
Q Consensus 486 ~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~--d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 563 (1167)
+..|..++..++ .+ ..++.++..+..++. |+-..-....+..++.++..- +.. ......++.++|.
T Consensus 316 RAVAAetLiPIA---~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p-~~a----~~dp~LVPRL~PF 383 (800)
T 3oc3_A 316 KLLSAELLCHFP---IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYREN-PEL----SIPPERLKDIFPC 383 (800)
T ss_dssp HHHHHHHHTTSC---CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHC-TTC----CCCSGGGGGTGGG
T ss_pred HHHHHHHhhhhc---ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCC-ccc----ccChHHHHHHHhh
Confidence 988888877776 22 346777777777776 333334456677888887652 211 1112345555554
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhh---cCchhhHHHHHHHH
Q 001062 564 IMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRM---GNEITRLTAVKAFA 625 (1167)
Q Consensus 564 ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L---~~e~~r~~a~~al~ 625 (1167)
+. +.-.+||.+++.++..++ ...++..+.+++ .++.++..+.+++.
T Consensus 384 ----LR--HtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 384 ----FT--SPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp ----GT--CSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ----hc--CCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 43 455799999988887654 345566666554 45667777777774
No 95
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.98 E-value=0.00046 Score=76.97 Aligned_cols=264 Identities=13% Similarity=0.103 Sum_probs=165.6
Q ss_pred CCChhHHHHHHHHHHHhhhhcChhh-H--HHHHHHHHHHhcC-----------CCcchhcHHHHHHHHHHhhcCCchhHH
Q 001062 57 DVAGDVSGLAVKCLAPLVKKVSEPR-V--VEMTDKLCIKLLN-----------GKDQHRDIASIALKTIIAEVTTSSLAQ 122 (1167)
Q Consensus 57 d~~~~Vr~~A~~~l~~l~~~~~~~~-~--~~l~~~L~~~~~~-----------~~~~~r~~a~~aL~~~~~~~~~~~~~~ 122 (1167)
.|+...+.+|+++|+.++..-..+. + ...++.|...+.. .+..++..++.+|..++.+-+. ...
T Consensus 43 ~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~--~k~ 120 (354)
T 3nmw_A 43 APVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA--NKA 120 (354)
T ss_dssp CGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH--HHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH--HHH
Confidence 3444667788888988884311000 0 0224444444421 1234677888999988754332 122
Q ss_pred HH--HHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHH--HHHHHHHHhhh-hcCChHHHHHHHHHHHHHH
Q 001062 123 SI--HTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSND--HERLLSALLPQ-LSANQASVRKKSVSCIASL 197 (1167)
Q Consensus 123 ~~--~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~--~~~l~~~ll~~-l~~~~~~vrk~a~~~l~~l 197 (1167)
.+ ....+|.|+..|.++ +++++..+..+|..+........... ....++.|++. +.+++..+++.|+.+|..+
T Consensus 121 ~i~~~~GaIp~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHCCC--CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 23 245689999999865 58999999999998865311111111 11235566665 3456678999999999999
Q ss_pred HhhcCHH---HH--HHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHHHH---Hhhhhhhcch--hhhHHHHHHHhhhcCC
Q 001062 198 ASSLSDD---LL--AKATIEVVRNLRSKGAK--PEMIRTNIQMVGALSR---AVGYRFGPHL--GDTVPVLIDYCTSASE 265 (1167)
Q Consensus 198 ~~~~~~~---~~--~~l~~~l~~~l~~~~~~--~~~r~~~~~~l~~l~~---~~~~~~~p~l--~~lvp~l~~~l~~~~e 265 (1167)
+...++. +. ...++.++..+++.+.. .+.++.+..++..++. ..+.. ...+ ...+|.+++.+.+
T Consensus 199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~-~~~i~~~g~i~~Lv~lL~~--- 274 (354)
T 3nmw_A 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH-RQILRENNCLQTLLQHLKS--- 274 (354)
T ss_dssp HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHTTTHHHHHHHHTTC---
T ss_pred HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH-HHHHHHcCCHHHHHHHHcC---
Confidence 8754332 22 34688888888765431 1478888888888886 22221 1111 3478999999988
Q ss_pred CChhHHHHHHHHHHHHHHhCCccccccH-HHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchH
Q 001062 266 NDEELREYSLQALESFLLRCPRDISSYC-DEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWK 344 (1167)
Q Consensus 266 ~~~e~re~al~~l~~l~~~~~~~~~~~l-~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~ 344 (1167)
.+.++++.|.+++..++...++...... ...++.+.+++.. .+.+
T Consensus 275 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s----------------------------------~~~~ 320 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS----------------------------------KHKM 320 (354)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC----------------------------------SSHH
T ss_pred CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC----------------------------------CCHH
Confidence 7889999999999999754433222221 1345666655531 0128
Q ss_pred HHHHHHHHHHHHHhcCCh
Q 001062 345 VRRAAAKCLAALIVSRPE 362 (1167)
Q Consensus 345 vR~aA~~~l~~li~~~~~ 362 (1167)
+|+.|+.+|..+....|+
T Consensus 321 i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 321 IAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHcCCHH
Confidence 999999999999988774
No 96
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.93 E-value=0.095 Score=66.13 Aligned_cols=583 Identities=12% Similarity=0.098 Sum_probs=284.0
Q ss_pred HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhcc--CCChhHHHHHHHHHH--HHHH
Q 001062 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLK--DMNTEIRCECLDILC--DVLH 158 (1167)
Q Consensus 83 ~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~--~~~~~v~~~~~~~L~--~l~~ 158 (1167)
..++..|.....+...++|..|-.+|..++..++.. ...++|.+++.|+.. +.+.+--++|+.+|. .+..
T Consensus 132 ~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs------~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~ 205 (997)
T 1vsy_5 132 NLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGS------YGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHR 205 (997)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTH------HHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhh
Confidence 467888888777888899999999999999888762 356777777777551 224455677887765 3322
Q ss_pred HhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCH-----------------------------------
Q 001062 159 KFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSD----------------------------------- 203 (1167)
Q Consensus 159 ~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~----------------------------------- 203 (1167)
...... .+...+++.++.+...+++.|++-+-.+...+......
T Consensus 206 ~~~~d~-~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~ 284 (997)
T 1vsy_5 206 KLMTDY-KDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKK 284 (997)
T ss_dssp HGGGCH-HHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTH
T ss_pred HHhcCh-HHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence 222111 56778888888887777787777766665555542110
Q ss_pred ------HHHHHHHHHHHHHh-hcCC--CChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHH
Q 001062 204 ------DLLAKATIEVVRNL-RSKG--AKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYS 274 (1167)
Q Consensus 204 ------~~~~~l~~~l~~~l-~~~~--~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~a 274 (1167)
+.+..+...++... .+.+ |+ ....+..++-.+ .-....|+=++++.++++.+.+ +++.+|+.|
T Consensus 285 ~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk--~~~~~~~~l~~l---~~r~d~~~~~~~v~~~~~~l~~---dhp~~R~~a 356 (997)
T 1vsy_5 285 KREYYLSLLVDLQDKLLDKLDNEKDMGWK--IRMFILRFVTQI---QSNLESKPDKRAVFSIISQIST---KHPEIIHLV 356 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSTTCCSC--HHHHHHHHHHHH---TCCSSCCCCHHHHHHHHGGGGG---CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHH--HHHHHHHHHHHH---HhcCCCCCCHHHHHHHHHhhcC---CCHHHHHHH
Confidence 00123333333433 2234 53 222222221111 1123356667899999998888 899999999
Q ss_pred HHHHHHHHHhCCc-cccccHHHHHHHHHHhhccCCCCCC--CCCCCCc-ccccccccchhhcCC-CCCCC-Cc---ch--
Q 001062 275 LQALESFLLRCPR-DISSYCDEILHLTLEYLSYDPNFTD--NMEEDSD-DEAYEEEEEDESANE-YTDDE-DA---SW-- 343 (1167)
Q Consensus 275 l~~l~~l~~~~~~-~~~~~l~~ii~~~~~~l~~dp~~~~--~~~~d~~-~~~~~~~~d~~~~~~-~~ddd-d~---sw-- 343 (1167)
..++..++..... ...+| + +..+... .+.|+... ++.+..- +....+..+.+ +.. |-|-. .. .|
T Consensus 357 ~~~l~~il~~~k~~~~~~~--d-~~~~~~~-~~~p~~~~l~~~~~~~~~~~~~~~~~~~~-~~~yfid~~~~~Gwl~Wp~ 431 (997)
T 1vsy_5 357 VKSLLSTCNKIISLSDYEY--D-ITRAYKN-EFNPSFVEILDTSTTSFPKTFTEEMNNFD-NPKYFIDLRAYVGWLCWGR 431 (997)
T ss_dssp HHHHTHHHHHHHHHHHHTT--C-GGGGSSS-SCCCTTEEEEESCSTTTHHHHHHHHSCCS-SCCCBCCSCCCSBTTBCCS
T ss_pred HHHHHHHHHHHHhhhcCCC--c-HHHhhcc-ccCCCCceecCCCCccHHHHHHHHHhccc-CCccceeCCCCCeEeeeCC
Confidence 9998777654210 00000 0 0000000 01111000 0000000 00000000000 001 11111 11 11
Q ss_pred --------------HHHH-HHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCc
Q 001062 344 --------------KVRR-AAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQ 408 (1167)
Q Consensus 344 --------------~vR~-aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~ 408 (1167)
.--+ .+.+.++.++. .+++++++..+++- ++.++.-+..-+..+..+++.....
T Consensus 432 ~~~vy~p~~~~l~~~~~e~~i~~~f~~~~~------~~~~~~l~~~l~qe-~~~~~~F~~~~v~l~k~lf~l~~rn---- 500 (997)
T 1vsy_5 432 LMYVMSPKALKLNLRENELEVLKTAGHLLT------REFLRDVTMNLVQD-NETRGVFSSGNVSFFSLVILLISSG---- 500 (997)
T ss_dssp EEEEECTTCCCCCCCHHHHHHHHHHHTTCC------HHHHHHHHHHHHHT-TTTTCCCCHHHHHHHHHHHHHHTTT----
T ss_pred ceeEeCCCCCCCCCCHHHHHHHHHHHhhcC------HHHHHHHHHHHHhh-ccccCccccchHHHHHHHHHHHhcc----
Confidence 1111 11222222111 24566666555432 2333333444455555555432100
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhc----CchhHhhhhhhHHHHHHhccc-CCCCc
Q 001062 409 IDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL----PDCLADHIGSLIPGIEKSLND-KSSTS 483 (1167)
Q Consensus 409 ~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~----~~~l~~~l~~l~~~l~~~l~d-~~~~~ 483 (1167)
-+ ...+|.+.+.+.+...+++.....++..++..++... .+.......-+.|.+.+++.+ -+.+.
T Consensus 501 -----~~-----~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et 570 (997)
T 1vsy_5 501 -----FC-----ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDA 570 (997)
T ss_dssp -----TC-----CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTH
T ss_pred -----cc-----hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchh
Confidence 00 1123555555566555544333345566666665432 122334455556666666652 21111
Q ss_pred hHHHH-----------------------------------------HHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcC
Q 001062 484 NLKIE-----------------------------------------ALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGE 522 (1167)
Q Consensus 484 ~~~~~-----------------------------------------al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d 522 (1167)
.--.. -+.++..++...+- .+. ....++..+. +.+
T Consensus 571 ~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~w-r~~-~~~~~l~~~~--l~h 646 (997)
T 1vsy_5 571 FEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEF-RAP-DVGKLFDELV--FDH 646 (997)
T ss_dssp HHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTT-SSC-CCHHHHHHCC--SCC
T ss_pred HHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhcc-ccc-cHHHHHHHHH--hCC
Confidence 00011 11112211111110 000 1223333333 567
Q ss_pred CchHHHHHHHHHHHHHHHhcc-CCc------------c--cc---CCCCccchHHHHHHHHHHhhc------C-CCCHHH
Q 001062 523 RYYKVTAEALRVCGELVRVLR-PSV------------E--GL---GFDFKPYVQPIYNAIMSRLTN------Q-DQDQEV 577 (1167)
Q Consensus 523 ~~~~v~~~al~~l~~l~~~~~-~~~------------~--~~---~~~~~~~l~~l~~~ll~~l~~------~-d~~~~v 577 (1167)
++..||...-.++..++..-- +.. . +. ...-.+.+...++.+++.+.. . ...+..
T Consensus 647 ~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~ 726 (997)
T 1vsy_5 647 PYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFI 726 (997)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTT
T ss_pred ChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccc
Confidence 788888877777777665431 100 0 00 000012222222233344431 0 011111
Q ss_pred HHH----HHHHHHHHHHhcCcc----cccchhh-hHHHHHHhhcCchh---hHH-HHHHHHHHhcCCCCCchhhHHHHHH
Q 001062 578 KEC----AISCMGLVISTFGDN----LGAELPA-CLPVLVDRMGNEIT---RLT-AVKAFAVIAASPLHIDLTCVLEHVI 644 (1167)
Q Consensus 578 r~~----Ai~alg~l~~~~g~~----l~~~~~~-~l~~L~~~L~~e~~---r~~-a~~al~~i~~~~~~~~~~~~~~~~l 644 (1167)
+.. +-..+-.+...++.. +.++++. ++|.++...+.++. ... |..++..++..+.. .++++.++
T Consensus 727 ~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~---~~~~~~~l 803 (997)
T 1vsy_5 727 KTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIR---KNHVAAIV 803 (997)
T ss_dssp TSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCC---HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCC---HHHHHHHH
Confidence 122 233344444554443 4455555 66666543322221 222 44555555543332 45666677
Q ss_pred HHHHHHHH-HhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCc-hhhHHHHHHHHHHHhhc
Q 001062 645 AELTAFLR-KANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSD-LHMTALALELCCTLMAD 714 (1167)
Q Consensus 645 ~~L~~~L~-~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d-~~~~~~al~~l~~l~~~ 714 (1167)
..+..... ++++ .|.+++..+..+.-+.---++.+....+...+..+|.++. .+++..|-.+|+-++..
T Consensus 804 ~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c 874 (997)
T 1vsy_5 804 DYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN 874 (997)
T ss_dssp HHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc
Confidence 76666555 5688 9999999998887654434555666778888889999999 99999999999999876
No 97
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.90 E-value=0.00017 Score=90.80 Aligned_cols=395 Identities=11% Similarity=0.082 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcC---h----hhHHHHHHHHHHHhc-CCCcchhcHHHHHHHHHHh
Q 001062 42 DLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS---E----PRVVEMTDKLCIKLL-NGKDQHRDIASIALKTIIA 113 (1167)
Q Consensus 42 ~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~---~----~~~~~l~~~L~~~~~-~~~~~~r~~a~~aL~~~~~ 113 (1167)
...+.+.+.+-....|.+..-|..|+..++-+++..+ . +.|..+.+.|-..+. +-+++....=..++..++.
T Consensus 504 ~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~ 583 (997)
T 1vsy_5 504 LNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPA 583 (997)
T ss_dssp CCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhc
Confidence 4456666677777788888889999999999886432 2 345566666666666 3556656666788888888
Q ss_pred hcCCchhHHHHHHHHHHHHHHh-hhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHH
Q 001062 114 EVTTSSLAQSIHTSLTPQLTKG-ITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVS 192 (1167)
Q Consensus 114 ~~~~~~~~~~~~~~i~p~Ll~~-l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~ 192 (1167)
+.+++ ....+++.++. +.. +..+..+.-....-+..|..++...|--+.. ...++..++ +.++...||.+...
T Consensus 584 ~~Dpr-R~~~L~e~l~~--~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VRe~Ig~ 657 (997)
T 1vsy_5 584 VVDLR-RSKTFFCHFIN--ADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVRQAVAK 657 (997)
T ss_dssp HSCGG-GCHHHHHHHTC--CCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHHHHHHH
T ss_pred CCChh-hhHHHHHHHHH--hhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHHHHHHH
Confidence 87774 22222222100 110 1111111112223345555555555443332 456666666 77877799999999
Q ss_pred HHHHHHhhcC----------------------------HHHHHHHHHHHHHHhhc---------CCC--ChH---HHHHH
Q 001062 193 CIASLASSLS----------------------------DDLLAKATIEVVRNLRS---------KGA--KPE---MIRTN 230 (1167)
Q Consensus 193 ~l~~l~~~~~----------------------------~~~~~~l~~~l~~~l~~---------~~~--~~~---~r~~~ 230 (1167)
.++.+....- ...+...++.++..+.. +.. +.. ..++.
T Consensus 658 ~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTv 737 (997)
T 1vsy_5 658 LLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTI 737 (997)
T ss_dssp HHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHH
Confidence 8887775541 01122223333333321 100 001 01222
Q ss_pred HHHHHHHHHH-hhhhhhcchhh-hHHHHHHHhhhcCCCCh-hHHHH-HHHHHHHHHHhCCccccccHHHHHHHHHHhhcc
Q 001062 231 IQMVGALSRA-VGYRFGPHLGD-TVPVLIDYCTSASENDE-ELREY-SLQALESFLLRCPRDISSYCDEILHLTLEYLSY 306 (1167)
Q Consensus 231 ~~~l~~l~~~-~~~~~~p~l~~-lvp~l~~~l~~~~e~~~-e~re~-al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~ 306 (1167)
+.-+...... ....+.||++. ++|.++..... .|+ |+... |..++..+. +. |+-+..++.++..+..
T Consensus 738 l~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~---~d~~eL~~~~a~~~l~~ls-~~-----~~~~~~~~~~l~~l~~ 808 (997)
T 1vsy_5 738 FYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKH---KDVCALASLDPVRLYAGLG-YM-----PIRKNHVAAIVDYVCS 808 (997)
T ss_dssp HHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSC---SHHHHHTTCCSHHHHHHTS-SS-----CCCHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhc---CcHHHHHhhHHHHHHHHHh-cC-----CCCHHHHHHHHHHHHH
Confidence 2222222221 22347788887 88888876544 333 66655 444444332 21 2233344433333320
Q ss_pred CCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCC-hhhHHHHHHHhhHHHhhhccCC-h
Q 001062 307 DPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRP-EMLSKLYEEACPKLIDRFKERE-E 384 (1167)
Q Consensus 307 dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~-~~l~~~~~~i~p~L~~~l~d~~-~ 384 (1167)
. -..+.|| .|.++...+..+.-..- -.-..--..+...+++.+.|.. -
T Consensus 809 ---~--------------------------~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~ 858 (997)
T 1vsy_5 809 ---S--------------------------NVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFV 858 (997)
T ss_dssp ---T--------------------------TTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCH
T ss_pred ---H--------------------------HhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccH
Confidence 0 0013589 99999988887765321 0001112345556667788999 9
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHh-c-----------cCChhhHHHHHHHHHH
Q 001062 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQL-R-----------EKSIKTKVGAFSVLRE 452 (1167)
Q Consensus 385 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L-~-----------~~~~~~r~~~~~~l~~ 452 (1167)
+||..+..+++.+++..+. . .....++..+.+.+ + +++...|+++.-.|++
T Consensus 859 EVRe~Aa~tLsgll~c~~~-------------~----~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~A 921 (997)
T 1vsy_5 859 EVRVRAASILSDIVHNWKE-------------E----QPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGA 921 (997)
T ss_dssp HHHHHHHHHHHHHHHSCCS-------------H----HHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCc-------------h----hhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHH
Confidence 9999999999999976411 0 11112332222222 1 1112578899999999
Q ss_pred HHHhcCchh--HhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCC
Q 001062 453 LVVVLPDCL--ADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHS 501 (1167)
Q Consensus 453 l~~~~~~~l--~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~ 501 (1167)
++..+|-.+ .+.+|+++..+....+++ ..++.++=.+++.+-++|.
T Consensus 922 lV~a~Py~vP~P~w~P~~l~~La~~~~~~---~~i~~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 922 IISAFPYVFPLPPWIPKNLSNLSSWARTS---GMTGNAAKNTISEFKKVRA 969 (997)
T ss_dssp HHTTCSCCSSCCTHHHHHHHHHHTTSSSC---SSHHHHTHHHHHHHHHHTS
T ss_pred HHhhCCCCCCCCcccHHHHHHHHHHhCCC---CchHHHHHHHHHHHHhccc
Confidence 999998876 578888888888777764 2467777778888888774
No 98
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.89 E-value=0.00017 Score=79.41 Aligned_cols=302 Identities=14% Similarity=0.138 Sum_probs=153.8
Q ss_pred chHHHHHHHHHHHHHHhc--CChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHH
Q 001062 342 SWKVRRAAAKCLAALIVS--RPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWL 419 (1167)
Q Consensus 342 sw~vR~aA~~~l~~li~~--~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~ 419 (1167)
..|.|++-.+++..+..+ +|+. ....+.+.+++.+..++...|.-++-.+..+.+..
T Consensus 41 ~~kc~~~l~kll~l~~~G~~f~~~---e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~------------------ 99 (355)
T 3tjz_B 41 PRKCAHILTKILYLINQGEHLGTT---EATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA------------------ 99 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCchh---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH------------------
Confidence 356677777777766554 2321 23344556667788888888877666665554321
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhcc
Q 001062 420 LKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1167)
Q Consensus 420 l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1167)
++.+ -++..+.+-++++++-+|-.++.+++.+.. +.+ ++.+.+.+.++|.|+ ++.+|..|+-+...++..
T Consensus 100 -~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~~m---~~~l~~~lk~~L~d~--~pyVRk~A~l~~~kL~~~ 169 (355)
T 3tjz_B 100 -EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD---STM---LQAIERYMKQAIVDK--VPSVSSSALVSSLHLLKC 169 (355)
T ss_dssp -SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---TTT---HHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTT
T ss_pred -HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---HHH---HHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHhcc
Confidence 1111 344667777889999899899888877753 334 778899999999998 578999888877777653
Q ss_pred CCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcC-CCCHHHH
Q 001062 500 HSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ-DQDQEVK 578 (1167)
Q Consensus 500 ~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~-d~~~~vr 578 (1167)
. |+ .+..+++.+...+.|+++-|...|+.++.++.+.- ...+..+++. +... -.++-..
T Consensus 170 ~-pe----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-----------~~a~~kLv~~----l~~~~l~~~~~q 229 (355)
T 3tjz_B 170 S-FD----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-----------RLAVSKMISK----FTRHGLKSPFAY 229 (355)
T ss_dssp C-HH----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHH----HHSSCCSCHHHH
T ss_pred C-HH----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-----------hHHHHHHHHH----HhcCCCcChHHH
Confidence 2 22 44667888888899999999999999988886431 1134444443 3221 1132222
Q ss_pred HHHHHHHHHHHHhcCccc-ccchhhhHHHHHHhhcCc--hhhHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhh
Q 001062 579 ECAISCMGLVISTFGDNL-GAELPACLPVLVDRMGNE--ITRLTAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKAN 655 (1167)
Q Consensus 579 ~~Ai~alg~l~~~~g~~l-~~~~~~~l~~L~~~L~~e--~~r~~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~ 655 (1167)
..-+..++ ..+..- ...-..+++.+...|++. .+.-.|++++-.+-..+ ...+...+..|..++.+++
T Consensus 230 ~~llr~l~----~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~-----~~~~~~a~~~L~~fLss~d 300 (355)
T 3tjz_B 230 CMMIRVAS----RQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS-----AKELAPAVSVLQLFCSSPK 300 (355)
T ss_dssp HHHHHHHT----CC-----------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSS
T ss_pred HHHHHHHH----HhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHcCCC
Confidence 22222222 222111 112355666676667543 34455666654443211 1223344555677788888
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhhhcCCCchhhHHHHHHHH
Q 001062 656 RALRQATLGTMNSLVVAYGDKIGASAYEVIIVELSTLISDSDLHMTALALELC 708 (1167)
Q Consensus 656 ~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~al~~l 708 (1167)
..+|..+++.|..++...+.. +...-.++..+++++|..++-.|+.+|
T Consensus 301 ~niryvaLr~L~~l~~~~P~~-----v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 301 AALRYAAVRTLNKVAMKHPSA-----VTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp SSSHHHHHHCC------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHCcHH-----HHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 999999999999999877643 444455677788999998877766544
No 99
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.76 E-value=0.0018 Score=75.52 Aligned_cols=321 Identities=16% Similarity=0.216 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhcCC-CcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc
Q 001062 83 VEMTDKLCIKLLNG-KDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 83 ~~l~~~L~~~~~~~-~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
.+.+++|+..+.+. -.+.|..|..+||.+....+. .+...-+|.|++.|.+...+.++-..++++|..++..-+
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~-----~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRL-----EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTT-----HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHH-----HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 34445555544432 234566666666665444333 122233444444444433344444555555544433211
Q ss_pred c----------------chhH---HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHH------HHHHHHH
Q 001062 162 N----------------LMSN---DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKA------TIEVVRN 216 (1167)
Q Consensus 162 ~----------------~l~~---~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l------~~~l~~~ 216 (1167)
. .+.. ..+.-++.++..|+..+..+|-.++++|..+....+....+.+ ++.++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1 0110 1234577888888888889999999999999998877644333 5677777
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhhh--hhhcchhhhHHHHHHHhhhcCC-CChhHHHHHHHHHHHHHHhCCcc---cc
Q 001062 217 LRSKGAKPEMIRTNIQMVGALSRAVGY--RFGPHLGDTVPVLIDYCTSASE-NDEELREYSLQALESFLLRCPRD---IS 290 (1167)
Q Consensus 217 l~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~p~l~~lvp~l~~~l~~~~e-~~~e~re~al~~l~~l~~~~~~~---~~ 290 (1167)
+.+.. +..|-.++.++..+.+..+. ++.- +...++.+++.+...+. +...+-+-|+..+.+++++.+.. |+
T Consensus 175 L~d~r--E~iRneallLL~~Lt~~n~~iQklVA-FEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 175 LADSR--EVIRNDGVLLLQALTRSNGAIQKIVA-FENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp GGCSS--HHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCch--HHHHHHHHHHHHHHhcCCHHHHHHHH-HhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77654 47888899999999987553 2222 24566777777766211 22357778999999999876532 22
Q ss_pred --ccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchH---HHH--HHHHHHHHHHhcCCh-
Q 001062 291 --SYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWK---VRR--AAAKCLAALIVSRPE- 362 (1167)
Q Consensus 291 --~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~---vR~--aA~~~l~~li~~~~~- 362 (1167)
.+++.+. ++++.+ +++..|. ++. ++..+++.++.....
T Consensus 252 Et~~i~~L~----~LL~~~------------------------------~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~ 297 (651)
T 3grl_A 252 EGSYIQRMK----PWFEVG------------------------------DENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297 (651)
T ss_dssp HTTCGGGGG----GGGCCC------------------------------SCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HcCCHHHHH----HHhCCC------------------------------ccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 2333332 233211 0112453 332 244566666554221
Q ss_pred --hh---HHHHH-HHhhHHHhhhccC--ChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHH-------HHHH
Q 001062 363 --ML---SKLYE-EACPKLIDRFKER--EENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQE-------VSKI 427 (1167)
Q Consensus 363 --~l---~~~~~-~i~p~L~~~l~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~-------~~~l 427 (1167)
.- ..+++ .+++.|++-+... ...++..++.+++.+++.-.. ....+.+. .|.+
T Consensus 298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~------------~Q~~fa~~~vp~~~~~p~l 365 (651)
T 3grl_A 298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV------------NQDYFASVNAPSNPPRPAI 365 (651)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH------------HHHHHHHCEESSSSCEEHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH------------HHHHHhhccCCCCCCcChH
Confidence 10 01221 1345555443222 567899999999998763210 00111111 2556
Q ss_pred HHHHHHHhccC-ChhhHHHHHHHHHHHHHhc
Q 001062 428 VKSINRQLREK-SIKTKVGAFSVLRELVVVL 457 (1167)
Q Consensus 428 ~~~l~~~L~~~-~~~~r~~~~~~l~~l~~~~ 457 (1167)
+..+...+++. ....|.+++.+|...+...
T Consensus 366 i~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 366 VVLLMSMVNERQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHhCC
Confidence 66666666554 3567888888888877544
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.54 E-value=0.00093 Score=74.68 Aligned_cols=211 Identities=14% Similarity=0.129 Sum_probs=152.3
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhhhhcCh--------hhHHHHHHHHHHHh-cC-------C--CcchhcHHHHHH
Q 001062 47 LSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSE--------PRVVEMTDKLCIKL-LN-------G--KDQHRDIASIAL 108 (1167)
Q Consensus 47 i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~--------~~~~~l~~~L~~~~-~~-------~--~~~~r~~a~~aL 108 (1167)
+.+.|+.-|-||+=++|+-|+-.|..+.+.-+. .. .+.-+|+..+ .+ + -..+|+.++.+|
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL 252 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL 252 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence 889999999999999999999999998875531 11 4444444332 21 1 235899999999
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHH
Q 001062 109 KTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRK 188 (1167)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk 188 (1167)
+.+ ..++.+ ..++-.|+..+..+ .|++|++++-.|--+ ...+.. .+.+++.++..|++++..||.
T Consensus 253 GaL-~hLp~e-------~~IL~qLV~~l~~~--~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~DDDVRA 317 (800)
T 3oc3_A 253 SRI-YPLIGP-------NDIIEQLVGFLDSG--DWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPDEDIKL 317 (800)
T ss_dssp HHH-TTTSCS-------CCHHHHHTTGGGCS--CHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSSHHHHH
T ss_pred HHH-HhCChh-------HHHHHHHHhhcCCC--CeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcccHHHH
Confidence 999 888874 23444555555443 699999999877655 232222 788999999999999889999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCCh
Q 001062 189 KSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDE 268 (1167)
Q Consensus 189 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~ 268 (1167)
-|+.+|.-++ ..+.++.++..++..+.+.++=+......+++++.++...+. .. .-+.++|-++-++.+ .-.
T Consensus 318 VAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~-a~-~dp~LVPRL~PFLRH---tIT 389 (800)
T 3oc3_A 318 LSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE-LS-IPPERLKDIFPCFTS---PVP 389 (800)
T ss_dssp HHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-CC-CCSGGGGGTGGGGTC---SSH
T ss_pred HHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-cc-cChHHHHHHHhhhcC---CcH
Confidence 9999988777 334578888888888876432234555678888888876432 11 124677777777777 678
Q ss_pred hHHHHHHHHHHHHH
Q 001062 269 ELREYSLQALESFL 282 (1167)
Q Consensus 269 e~re~al~~l~~l~ 282 (1167)
.||.+.++++..|.
T Consensus 390 SVR~AVL~TL~tfL 403 (800)
T 3oc3_A 390 EVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999988776
No 101
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.50 E-value=0.00025 Score=78.11 Aligned_cols=226 Identities=13% Similarity=0.046 Sum_probs=114.4
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
.++++..-++++++-+|-+|+..|++... ++..+.+.+.+-++|.|+++.||+.|+-|...+.+..++ .+..
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~-------~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-~v~~ 176 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITD-------STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-VVKR 176 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCC-------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-HHHT
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-HHHH
Confidence 45677777888888888888888877653 456788889999999999999999999999988876644 4566
Q ss_pred HHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccch
Q 001062 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLM 164 (1167)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l 164 (1167)
+++.+-+.+.+.++-+.-.|..+|..+... + ...+.++++.+..+ .-.++-.+...+.++..+ ++.=
T Consensus 177 ~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d-----~~a~~kLv~~l~~~---~l~~~~~q~~llr~l~~~----~~~d 243 (355)
T 3tjz_B 177 WVNEAQEAASSDNIMVQYHALGLLYHVRKN-D-----RLAVSKMISKFTRH---GLKSPFAYCMMIRVASRQ----LEDE 243 (355)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHTT-C-----HHHHHHHHHHHHSS---CCSCHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhh-c-----hHHHHHHHHHHhcC---CCcChHHHHHHHHHHHHh----cccc
Confidence 777777777666655543333334433321 1 11334455554331 000122222233333222 2211
Q ss_pred -hHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh
Q 001062 165 -SNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY 243 (1167)
Q Consensus 165 -~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~ 243 (1167)
......+++.+.+.+++.++.|-=.|+.++-.+.. .+...+...+..+...+.+++ .+.|-.++..+..++...|.
T Consensus 244 ~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d--~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 244 DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPK--AALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp -------------CCCCCSSHHHHHHHHHHHTC------------CCCTHHHHHHSSS--SSSHHHHHHCC---------
T ss_pred chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHCcH
Confidence 12346788888888988888888888888777655 233333333333334444443 36788888889888888877
Q ss_pred hhhcchhhhHH
Q 001062 244 RFGPHLGDTVP 254 (1167)
Q Consensus 244 ~~~p~l~~lvp 254 (1167)
.+..+-.++..
T Consensus 321 ~v~~~n~~ie~ 331 (355)
T 3tjz_B 321 AVTACNLDLEN 331 (355)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 76665444444
No 102
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.46 E-value=0.089 Score=58.62 Aligned_cols=278 Identities=15% Similarity=0.131 Sum_probs=160.6
Q ss_pred HHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHHHHH
Q 001062 9 ILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEMTDK 88 (1167)
Q Consensus 9 ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l~~~ 88 (1167)
+++..+. ++....+|.+-+-++.+ .-+...++-++.++.+..|.+..||.+|++-|..+++. +.+..+.+.
T Consensus 34 Il~~~kg-~~k~K~LaaQ~I~kffk-----~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDv 104 (507)
T 3u0r_A 34 ILDGVKG-GTKEKRLAAQFIPKFFK-----HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADI 104 (507)
T ss_dssp HHHGGGS-CHHHHHHHHHHHHHHGG-----GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHH
T ss_pred HHHhcCC-CHHHHHHHHHHHHHHHh-----hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHH
Confidence 3444444 35556667666666554 34678889999999999999999999999999988866 678999999
Q ss_pred HHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchh-HH
Q 001062 89 LCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMS-ND 167 (1167)
Q Consensus 89 L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~-~~ 167 (1167)
|.+.+.......+.+..-+|..++..-+. ..+..++..+... ++.+|+.++..|.+-+...+..+. ..
T Consensus 105 L~QlLqtdd~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~--~e~~Rer~lkFi~~kl~~l~~~~l~~E 173 (507)
T 3u0r_A 105 LTQLLQTDDSAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQG--EDIVRERAIKFLSTKLKTLPDEVLTKE 173 (507)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHS--CHHHHHHHHHHHHHHGGGSCTTTSCHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHccc--chHHHHHHHHHHHHHHhhcchhhccHH
Confidence 99999877777778888888877654332 2223333333322 478999999999887777666442 22
Q ss_pred H-HHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhh--cC--CCChHHHHHHHHHHHHHHHHh-
Q 001062 168 H-ERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLR--SK--GAKPEMIRTNIQMVGALSRAV- 241 (1167)
Q Consensus 168 ~-~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~--~~--~~~~~~r~~~~~~l~~l~~~~- 241 (1167)
. .-+...+.+.|.+-...==..-+..|+.+-..-...-.+++++.+..... .+ ..+.+..+..++++..-.-..
T Consensus 174 ~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS 253 (507)
T 3u0r_A 174 VEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFS 253 (507)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCB
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 2 23344444444332221112233333333333222334455555554432 11 113344444444443332210
Q ss_pred ----hhhhhcc-hhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC--ccccccHHHHHHHHHHhhccCC
Q 001062 242 ----GYRFGPH-LGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCP--RDISSYCDEILHLTLEYLSYDP 308 (1167)
Q Consensus 242 ----~~~~~p~-l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~--~~~~~~l~~ii~~~~~~l~~dp 308 (1167)
..+|-.| ...++|.+- .+.. .++.++.+-.-+.++..++.+|+ ..-...++.+.+.++++|=.-|
T Consensus 254 ~~v~StkFv~y~~~kIlP~l~-~L~e-~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p 325 (507)
T 3u0r_A 254 KNVHSTRFVTYFCEQVLPNLG-TLTT-PVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPP 325 (507)
T ss_dssp TTBCCHHHHHHHHHHTGGGTT-CCCC-C--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC
T ss_pred cCCChHHHHHHHHHhhccchh-hccc-cccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCc
Confidence 1122222 233444211 1111 01122345567888888888887 3345688999999888875333
No 103
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.40 E-value=8.8e-05 Score=69.96 Aligned_cols=118 Identities=13% Similarity=0.057 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
.+..+.+.+.++|+.+|..|+..|.+. .+.. ++.|++.|+|+++.||..|+..++.+.. ..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~--------~~~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~~ 73 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRM--------GDEA----FEPLLESLSNEDWRIRGAAAWIIGNFQD-------ER 73 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSC--------SSTT----HHHHHHGGGCSCHHHHHHHHHHHGGGCS-------HH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHh--------CchH----HHHHHHHHcCCCHHHHHHHHHHHHhcCC-------HH
Confidence 456677888999999999998777521 1111 4888899999999999999999998752 23
Q ss_pred HHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHH
Q 001062 85 MTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCD 155 (1167)
Q Consensus 85 l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~ 155 (1167)
.++.|...+.++++.+|..++.+|..+- . ...+|.|...+.++ ++.||..+...|+.
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~----~--------~~a~~~L~~~l~d~--~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIG----G--------ERVRAAMEKLAETG--TGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHC----S--------HHHHHHHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC----c--------HHHHHHHHHHHhCC--CHHHHHHHHHHHHh
Confidence 4666667677888889999999988643 1 23567777777654 58899999887753
No 104
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.28 E-value=5.4e-05 Score=71.44 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=74.2
Q ss_pred cchHHHHHHhcCCChhhHHHHHHHHHHhhhhcCcccchHHHHHHhhc-ccchhHHHHHHHHHHHhhccccchhhhhHHHH
Q 001062 851 EHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDN-QQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVE 929 (1167)
Q Consensus 851 ~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~-~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~ 929 (1167)
+...+.+...++++++.+|..|+.+||.+.. . -+|.+++.+.+ ++..|..++.+|+.+.. .
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~--~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------------~ 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E--AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------------E 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T--THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------------H
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h--HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------------H
Confidence 4456778888888888888888888887542 2 25888877765 45567777777765421 1
Q ss_pred HHHHHHHhhccCCccchhhHHHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHH
Q 001062 930 KILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIK 989 (1167)
Q Consensus 930 ~i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk 989 (1167)
..++.|.+...+++..||..++.+||++. ....+|.|.+.++++++.+|..++.++.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 12233333334566788999999999875 2356788888888878888888877664
No 105
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.18 E-value=0.0021 Score=64.76 Aligned_cols=148 Identities=22% Similarity=0.266 Sum_probs=103.1
Q ss_pred cchHHHHHHhcCCChhhHHHHHHHHHHhhhhcCcccchHHHHHHhhcccchhHHHHHHHHHHHhhccccchhhhhHHHHH
Q 001062 851 EHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEK 930 (1167)
Q Consensus 851 ~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~ 930 (1167)
+++.+.+..+.+++..+||..|++.||.+ . .....+|.+.+.
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-~~~~~L~~ir~~------------------------------------ 111 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-KDKEILIFMRDE------------------------------------ 111 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-TSHHHHHHHHHT------------------------------------
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-CcHHHHHHHHHH------------------------------------
Confidence 56788888888999999999999999976 2 111222222111
Q ss_pred HHHHHHhhccCCccchhhHHHHHhhhccc-cCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHH
Q 001062 931 ILNLLFNHCESEEEGVRNVVAECLGKIAL-IEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISS 1009 (1167)
Q Consensus 931 i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~-~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~ 1009 (1167)
...++.-.||..++.+++.++. .+|+..+|.+.+-+++++..+|.+++...+-.... . ....... .+-+
T Consensus 112 -------va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~-~ll~ 181 (240)
T 3l9t_A 112 -------VSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P-YFKENPN-EAIR 181 (240)
T ss_dssp -------GGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T-TTTTCHH-HHHH
T ss_pred -------hCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c-hhhcCHH-HHHH
Confidence 1123446788888889998886 78887888888888888999998888876532221 1 1111122 2333
Q ss_pred HHh-hccCCChHHHHHHHHHHHHHHhcCchhhhchhhh
Q 001062 1010 FLM-LIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPE 1046 (1167)
Q Consensus 1010 ~l~-~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~~l~~ 1046 (1167)
++. ...|++.-||++....|+-+++..|+.+...+..
T Consensus 182 iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 182 RIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 444 5568888899999999999999999998877764
No 106
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.05 E-value=0.46 Score=58.08 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHH-HHHhhhhcCChHHHHHHHHHHHHHHHhhcCHH
Q 001062 126 TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLL-SALLPQLSANQASVRKKSVSCIASLASSLSDD 204 (1167)
Q Consensus 126 ~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~-~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~ 204 (1167)
+.|+|.+ +.|+++ +++.|..|+.+|+.++..-...-.-....++ +.+.+.|.+++..||..|+.+|+.++...+.+
T Consensus 34 ~~i~Pll-~~L~S~--~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILPVL-KDLKSP--DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHHHH-HHHSSS--CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHHHH-HHcCCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 4566654 457665 5889999999999998532111011223344 45566788899999999999999999887766
Q ss_pred HHHH-----HHHHHHHHhhcC-------C-----CCh-------HHHHHHHHHHHHHHHHhhhhhhcc-hhhhHHHHHHH
Q 001062 205 LLAK-----ATIEVVRNLRSK-------G-----AKP-------EMIRTNIQMVGALSRAVGYRFGPH-LGDTVPVLIDY 259 (1167)
Q Consensus 205 ~~~~-----l~~~l~~~l~~~-------~-----~~~-------~~r~~~~~~l~~l~~~~~~~~~p~-l~~lvp~l~~~ 259 (1167)
.... +++.+...+++. . ... +.....+.++..++....+.+.-. -...+|.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 4222 555555544320 0 001 122345677788887655433221 13566666666
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhC
Q 001062 260 CTSASENDEELREYSLQALESFLLRC 285 (1167)
Q Consensus 260 l~~~~e~~~e~re~al~~l~~l~~~~ 285 (1167)
+.+.+....+++.++++++..+.+..
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn 216 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDN 216 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 64422234579999999998887654
No 107
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.94 E-value=0.22 Score=61.02 Aligned_cols=321 Identities=13% Similarity=0.107 Sum_probs=175.0
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHHHHh
Q 001062 167 DHERLLSALLPQLSANQASVRKKSVSCIASLASSLS---DDLLAKATIEVVRNLRS--KGAKPEMIRTNIQMVGALSRAV 241 (1167)
Q Consensus 167 ~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~---~~~~~~l~~~l~~~l~~--~~~~~~~r~~~~~~l~~l~~~~ 241 (1167)
....+.+.++..+-+.+..+...+..|+..++-..| +-++..+++.+-..+.. -.. .....+++.++..+++..
T Consensus 336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e-~Hrl~~aL~~l~~~~r~l 414 (799)
T 1vsy_4 336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINS-RHRIISSLKQFTRVIRFI 414 (799)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTC-HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccc-hhHHHHHHHHHHHHHHHH
Confidence 344556666666777778999999999999999888 88888888888888876 443 233446688888888864
Q ss_pred h--hhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcc-cc---ccH------HHHHHHHHHhhccCCC
Q 001062 242 G--YRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD-IS---SYC------DEILHLTLEYLSYDPN 309 (1167)
Q Consensus 242 ~--~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~-~~---~~l------~~ii~~~~~~l~~dp~ 309 (1167)
- ..+.+|+..++..++..+.. .|..-.-.+++++..++...|-. +. .++ .+.++.-..+++.|..
T Consensus 415 v~~~~yr~hl~~lL~l~LpgID~---ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (799)
T 1vsy_4 415 VMDKLYRVHITNVLSMLVSKLDM---NDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGES 491 (799)
T ss_dssp TTSTTGGGHHHHHHHHHHHTCCS---SCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCC
T ss_pred hcCcccHHHHHHHHHHHhccCCc---ccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccc
Confidence 3 35677888888888877766 67777778899999998877621 11 110 1122222333332110
Q ss_pred CCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHH
Q 001062 310 FTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMD 389 (1167)
Q Consensus 310 ~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~ 389 (1167)
+ + .++ ++. +..-+..+++.. .+++.+..+++.++..+-. ..++.+-..
T Consensus 492 -----~---~-----~~~-------~d~--~~~~~~~~~sT~-------~f~~~v~~f~drvf~llen---~~Ee~l~~~ 539 (799)
T 1vsy_4 492 -----S---K-----TFR-------VDD--ELLNNAFKASTT-------VFQSMLKVYVEKIFQLVDV---DLEDSLVTK 539 (799)
T ss_dssp -----S---S-----SCC-------CCT--THHHHHHHHHTS-------THHHHHHHHHHHHHHHTTS---CCCTHHHHH
T ss_pred -----c---c-----ccc-------ccH--HHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhc---CchHHHHHH
Confidence 0 0 000 000 000022333222 2233333455555433221 345666655
Q ss_pred HHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCC-h-hhHHH-HHH--HHHHHHHhcCchhHhh
Q 001062 390 VFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKS-I-KTKVG-AFS--VLRELVVVLPDCLADH 464 (1167)
Q Consensus 390 ~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~-~-~~r~~-~~~--~l~~l~~~~~~~l~~~ 464 (1167)
+-.++..++.+.. .+.....++.+.+...+.. . .++.. .+. .+..++...|+.+..+
T Consensus 540 l~~~~~~l~~~lS------------------~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~~~~ 601 (799)
T 1vsy_4 540 INQTTMILQESMD------------------DKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKEL 601 (799)
T ss_dssp HHHHHHHHHHTBC------------------HHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHhCC------------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 5556666666554 1222333333333332221 1 12222 111 1677788888855556
Q ss_pred hhhhHHHHHHhcccC-----CCCc-----hHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhc-CCchHHHHHHHH
Q 001062 465 IGSLIPGIEKSLNDK-----SSTS-----NLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG-ERYYKVTAEALR 533 (1167)
Q Consensus 465 l~~l~~~l~~~l~d~-----~~~~-----~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~-d~~~~v~~~al~ 533 (1167)
++.++..|...+++. .... ..-.=.+.+++.++...+ +.+.+|-+.++..+...+. .+...+...+..
T Consensus 602 ~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g-~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ 680 (799)
T 1vsy_4 602 VRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCH-ESLLEYSDELITFMKYLYDNVTNPPLDVITSI 680 (799)
T ss_dssp HHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTG-GGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCc-HHHHccHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 666666555444332 1100 111223456777776544 5677888888887776663 333333333445
Q ss_pred HHHHHHHhc
Q 001062 534 VCGELVRVL 542 (1167)
Q Consensus 534 ~l~~l~~~~ 542 (1167)
.+..++..+
T Consensus 681 ll~~lL~sL 689 (799)
T 1vsy_4 681 VIHSALATL 689 (799)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.85 E-value=0.056 Score=55.70 Aligned_cols=187 Identities=13% Similarity=0.074 Sum_probs=115.7
Q ss_pred HHHHHHhcCCCCh--hHHHHHHHHHHHhhhhcChhh--H--HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhH
Q 001062 48 SNIVVQQLDDVAG--DVSGLAVKCLAPLVKKVSEPR--V--VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLA 121 (1167)
Q Consensus 48 ~~~ll~~L~d~~~--~Vr~~A~~~l~~l~~~~~~~~--~--~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~ 121 (1167)
++.+++.|.++++ ++|..|..++..++..-.+.. + ...++.|.+.+.+++.+++..|+.||+.+...-+.. .
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n--k 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN--K 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH--H
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH--H
Confidence 5778889988877 999999999998885432211 1 134789999998888889999999999987643321 1
Q ss_pred HHHH-HHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhc----------------CChH
Q 001062 122 QSIH-TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLS----------------ANQA 184 (1167)
Q Consensus 122 ~~~~-~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~----------------~~~~ 184 (1167)
..+. ..-+|.|++.|.+.. +.++++.+..+|-.+...-..- ......-++.|...+. ..++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchH
Confidence 1222 246788888887432 5889999988888776432110 0111122444444321 1245
Q ss_pred HHHHHHHHHHHHHHhhcCHH--H-------HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 001062 185 SVRKKSVSCIASLASSLSDD--L-------LAKATIEVVRNLRSKGAKPEMIRTNIQMVGALS 238 (1167)
Q Consensus 185 ~vrk~a~~~l~~l~~~~~~~--~-------~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~ 238 (1167)
.++..|..||..++..-.+. . ++.++..+-..+.+.+.+...++.++-++-.++
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 89999999999998753221 1 233333333333333333456666666665543
No 109
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.61 E-value=0.22 Score=61.09 Aligned_cols=265 Identities=14% Similarity=0.139 Sum_probs=163.0
Q ss_pred cCCChHHHHHHHHH----HHHhcCCCChhHHHHHHHHHHHhhhhcC---hhhHHHHHHHHHHHhcC--CCcchhcHH-HH
Q 001062 37 FKADADLEVKLSNI----VVQQLDDVAGDVSGLAVKCLAPLVKKVS---EPRVVEMTDKLCIKLLN--GKDQHRDIA-SI 106 (1167)
Q Consensus 37 ~~~~~~~~~~i~~~----ll~~L~d~~~~Vr~~A~~~l~~l~~~~~---~~~~~~l~~~L~~~~~~--~~~~~r~~a-~~ 106 (1167)
.++++...+++|.. ++.++-+.+..+.+.+..|+..|+---+ +-.++.+++.+...+.. -.+.+|-.+ ..
T Consensus 326 ~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~ 405 (799)
T 1vsy_4 326 ICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLK 405 (799)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHH
Confidence 34566666666654 5566679999999999999999987666 77788899999888876 455555543 33
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhcc------------------------
Q 001062 107 ALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFGN------------------------ 162 (1167)
Q Consensus 107 aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g~------------------------ 162 (1167)
+|..++--+-..+..+..+-.++..++.|+.-. +..-...++..+..++...+-
T Consensus 406 ~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~N--D~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~ 483 (799)
T 1vsy_4 406 QFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMN--DTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHF 483 (799)
T ss_dssp HHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSS--CHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHhccCCcc--cHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhh
Confidence 444433322222223445556666666666543 344455566666666553211
Q ss_pred ----------------------------chhHHHHHHHHHHhhhhcCC-hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 001062 163 ----------------------------LMSNDHERLLSALLPQLSAN-QASVRKKSVSCIASLASSLSDDLLAKATIEV 213 (1167)
Q Consensus 163 ----------------------------~l~~~~~~l~~~ll~~l~~~-~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l 213 (1167)
.+......+++.++..+.+. +..+-..-..++..+...+++++|+..+..+
T Consensus 484 ~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~ 563 (799)
T 1vsy_4 484 YHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLL 563 (799)
T ss_dssp HHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHH
T ss_pred hhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 12233445556666666542 2233355666788888999999999998888
Q ss_pred HHHhhcCCCChHHHHHHHHH----HHHHHHHhhhhhhcchhhhHHHHHHHhhhc-----C--CC--ChhHHHHHHHHHHH
Q 001062 214 VRNLRSKGAKPEMIRTNIQM----VGALSRAVGYRFGPHLGDTVPVLIDYCTSA-----S--EN--DEELREYSLQALES 280 (1167)
Q Consensus 214 ~~~l~~~~~~~~~r~~~~~~----l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~-----~--e~--~~e~re~al~~l~~ 280 (1167)
.+-+.+.-.. ...+..-.. ++++++..|..|..++|.++..+...+++. + |. .|..---.+..+..
T Consensus 564 ~~fv~~n~~~-~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~ 642 (799)
T 1vsy_4 564 NRNFWSNDSF-KEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALND 642 (799)
T ss_dssp HHHHHSCSCC-CSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhh-hHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHH
Confidence 8876554321 112222233 688888888755555555555555444221 0 10 11122235777788
Q ss_pred HHHhCCccccccHHHHHHHHHHhh
Q 001062 281 FLLRCPRDISSYCDEILHLTLEYL 304 (1167)
Q Consensus 281 l~~~~~~~~~~~l~~ii~~~~~~l 304 (1167)
++.+.+..+-+|-+++++++...+
T Consensus 643 ~v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 643 VLRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HHTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HHhcCcHHHHccHHHHHHHHHHHH
Confidence 888888889999999998776554
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.34 E-value=0.52 Score=52.59 Aligned_cols=241 Identities=15% Similarity=0.207 Sum_probs=142.0
Q ss_pred hHHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhH
Q 001062 3 NLQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRV 82 (1167)
Q Consensus 3 ~~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~ 82 (1167)
...|+.+++-..+.|.++|..|+-+|-.... + ....++.+.|.++|...++.-...+-++|-.+.+.=+.
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck------~-~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--- 133 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFAT------G-ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--- 133 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC------T-TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH---
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhHHHhh------h-hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH---
Confidence 4567888888999999999999988865443 3 56899999999999988888888888888887754433
Q ss_pred HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhc-
Q 001062 83 VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKFG- 161 (1167)
Q Consensus 83 ~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~g- 161 (1167)
..+..|+..+.++++.+|+-...=|+.-+..++.+.+...+-..|...+.+.|++ |..+=+..+-+++....
T Consensus 134 -~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D------VT~~EF~L~m~lL~~lkl 206 (507)
T 3u0r_A 134 -GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED------VTGEEFVLFMKILSGLKS 206 (507)
T ss_dssp -HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS------CCHHHHHHHHHHHHTSGG
T ss_pred -HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHhccc
Confidence 3455555555555566676544434443444554422222333444444444433 22233344445554322
Q ss_pred -cchhHHHHHHHHHHhhhh------cCChHHHHHHHHHHHHHHHhhcCH-----HHHHHHHHHHHHHhhcCCCC---hHH
Q 001062 162 -NLMSNDHERLLSALLPQL------SANQASVRKKSVSCIASLASSLSD-----DLLAKATIEVVRNLRSKGAK---PEM 226 (1167)
Q Consensus 162 -~~l~~~~~~l~~~ll~~l------~~~~~~vrk~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~---~~~ 226 (1167)
... ..++++++.+.... ...++..-.+-+.|+.....+... +++.-+...++..+.+-... .+.
T Consensus 207 ~~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~ 285 (507)
T 3u0r_A 207 LQTV-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDI 285 (507)
T ss_dssp GSSH-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCH
T ss_pred ccCc-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHH
Confidence 222 45567777777652 223445556667777777665533 35555555555554432211 124
Q ss_pred HHHHHHHHHHHHHHhh--hhhhcchhhhHHHHHHHhh
Q 001062 227 IRTNIQMVGALSRAVG--YRFGPHLGDTVPVLIDYCT 261 (1167)
Q Consensus 227 r~~~~~~l~~l~~~~~--~~~~p~l~~lvp~l~~~l~ 261 (1167)
+-..+.++..++..++ +.-...++.|...++.++-
T Consensus 286 kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP 322 (507)
T 3u0r_A 286 QLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMP 322 (507)
T ss_dssp HHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCC
Confidence 5556666666666665 2333455556655555553
No 111
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.12 E-value=0.53 Score=46.34 Aligned_cols=148 Identities=10% Similarity=0.153 Sum_probs=92.5
Q ss_pred chhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhc--CCchHHHHHHHHHHH
Q 001062 459 DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVG--ERYYKVTAEALRVCG 536 (1167)
Q Consensus 459 ~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~--d~~~~v~~~al~~l~ 536 (1167)
..+..|+..+...+.. ..+.+|+.-++. . ..+++.+|.++..+...+. -.+.......+..+.
T Consensus 7 ~Elq~yf~~It~a~~~---------~~r~~aL~sL~~---D---~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ 71 (196)
T 4atg_A 7 KELQLYFDKILSMIKS---------DMKDIAIECLEK---E---SGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYF 71 (196)
T ss_dssp HHHHHHHHHHHHHHTS---------TTHHHHHHHHHH---C---SSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---------HHHHHHHHHHhc---C---CChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 3445566666655543 346666655543 2 2344444444444444332 123455555566666
Q ss_pred HHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCch
Q 001062 537 ELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQ-EVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEI 615 (1167)
Q Consensus 537 ~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~-~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~ 615 (1167)
.++.+ + .-.+.||+.+++|.++.++-.+...+ .+|+.|...++.++..++.....-.++++..+...+.++.
T Consensus 72 ALl~N--~-----~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~ 144 (196)
T 4atg_A 72 SLIKN--K-----HVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN 144 (196)
T ss_dssp HHHHC--T-----TCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT
T ss_pred HHHcC--C-----CCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC
Confidence 66653 2 22578999999999999986555544 7999999999999999998776666777887777765443
Q ss_pred ----hhHHHHHHHHHHh
Q 001062 616 ----TRLTAVKAFAVIA 628 (1167)
Q Consensus 616 ----~r~~a~~al~~i~ 628 (1167)
+.-.|+..+..+.
T Consensus 145 ~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 145 RSEDSQYGALYCLSILS 161 (196)
T ss_dssp SCHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHhH
Confidence 4455666655543
No 112
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.07 E-value=0.077 Score=54.65 Aligned_cols=194 Identities=13% Similarity=0.071 Sum_probs=117.2
Q ss_pred hHHHHHHHHHhcCCCh--hHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChh
Q 001062 3 NLQMAAILEKITGKDK--DFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEP 80 (1167)
Q Consensus 3 ~~~i~~ll~~~~~~d~--d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~ 80 (1167)
...+..+.+.+.+.|+ +++..|...|.+.-..+......=.....++.|++.|.+++.++|..|+.+|..++..-.+.
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 4567888999999998 89988888887644321100000011234799999999999999999999999998532221
Q ss_pred h--H--HHHHHHHHHHhc-CCCcchhcHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHhhhcc--------------CC
Q 001062 81 R--V--VEMTDKLCIKLL-NGKDQHRDIASIALKTIIAEVTTSSLAQSIHTSLTPQLTKGITLK--------------DM 141 (1167)
Q Consensus 81 ~--~--~~l~~~L~~~~~-~~~~~~r~~a~~aL~~~~~~~~~~~~~~~~~~~i~p~Ll~~l~~~--------------~~ 141 (1167)
. + ..-++.|...+. .++.+.++.++.+|..+... +. .-..+.+.-+|.|.+.+..+ ..
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~--~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DK--LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GG--GHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hh--hHHHHHhccHHHHHHHHhccccCCcccccccccccc
Confidence 1 1 124777777776 45677888888888887542 21 22344555677776543210 01
Q ss_pred ChhHHHHHHHHHHHHHHHh---ccchhH---HHHHHHHHHhhhhcCC--hHHHHHHHHHHHHHHHh
Q 001062 142 NTEIRCECLDILCDVLHKF---GNLMSN---DHERLLSALLPQLSAN--QASVRKKSVSCIASLAS 199 (1167)
Q Consensus 142 ~~~v~~~~~~~L~~l~~~~---g~~l~~---~~~~l~~~ll~~l~~~--~~~vrk~a~~~l~~l~~ 199 (1167)
+..++..+..+|..+.... -..+.. -.+.++..+-....+. +.+.++.++-+|..|+-
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 4578888888887775421 111211 1233333333333222 22666777777766653
No 113
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=95.74 E-value=3.1 Score=45.86 Aligned_cols=303 Identities=12% Similarity=0.153 Sum_probs=173.6
Q ss_pred hhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhc----CC---C------------ChhH----HHHHHHHHHHhh
Q 001062 18 KDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL----DD---V------------AGDV----SGLAVKCLAPLV 74 (1167)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L----~d---~------------~~~V----r~~A~~~l~~l~ 74 (1167)
++++-.+|.+|...++.....+++.....++.++-.-+ .. + .-+. -+.+...+-.++
T Consensus 33 Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfi 112 (403)
T 3fga_B 33 KEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFL 112 (403)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSCCSTTCCGGGCCCCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCCccccCCccccccccccCcHHHHHHHHHHHHHH
Confidence 35668999999999987777778777777777765333 11 1 1011 234444444443
Q ss_pred hh--cChh----hH-HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHhhhccCCChhHH
Q 001062 75 KK--VSEP----RV-VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS-SLAQSIHTSLTPQLTKGITLKDMNTEIR 146 (1167)
Q Consensus 75 ~~--~~~~----~~-~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~-~~~~~~~~~i~p~Ll~~l~~~~~~~~v~ 146 (1167)
.. ..+. .+ ..++.+|+..+.++++..|+.--..|..+...+... .+.+..+..++-++.. ..+.... -
T Consensus 113 ~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiy---e~e~~~G-I 188 (403)
T 3fga_B 113 ESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIY---ETEHHNG-I 188 (403)
T ss_dssp HCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH---TTCCCTT-H
T ss_pred hccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc---CcccCCC-H
Confidence 21 1111 11 246777888888888888888777777776655431 2222223333333322 2221222 3
Q ss_pred HHHHHHHHHHHHHhccchhHHH-HHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCh
Q 001062 147 CECLDILCDVLHKFGNLMSNDH-ERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKP 224 (1167)
Q Consensus 147 ~~~~~~L~~l~~~~g~~l~~~~-~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 224 (1167)
.+.+++++.++..|..-+.+.+ .-+...+++..+.+.. .--..=..|+..+...-+. +...++..++..--.. +.
T Consensus 189 aeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~-L~~~vi~~LLk~WP~t--ns 265 (403)
T 3fga_B 189 AELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST-LTEPVVMALLKYWPKT--HS 265 (403)
T ss_dssp HHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGG-GHHHHHHHHHHTCCSS--CH
T ss_pred HHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCch-hHHHHHHHHHHhCCCC--Cc
Confidence 4789999999998877665444 4467888888766543 2223334455555533222 3455566665443222 22
Q ss_pred HHHHHHHHHHHHHHHHh-hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHH--HHHHhCCccccccHHHHHHHHH
Q 001062 225 EMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALE--SFLLRCPRDISSYCDEILHLTL 301 (1167)
Q Consensus 225 ~~r~~~~~~l~~l~~~~-~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~--~l~~~~~~~~~~~l~~ii~~~~ 301 (1167)
......+.-++.++... |..|.+....+...+-.++.+ .+-.|.|.|+..+. .++.. +..+-..+++.+.
T Consensus 266 ~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S---~hfqVAErAL~~wnNe~i~~l----i~~n~~~IlPii~ 338 (403)
T 3fga_B 266 PKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS---PHFQVAERALYYWNNEYIMSL----ISDNAAKILPIMF 338 (403)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTC---SCHHHHHHHHGGGGCHHHHHH----HHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHhccHHHHHH----HHHhHHHHHHHHH
Confidence 22223455666677654 456777777777777788877 77788888876652 22221 2233344555544
Q ss_pred HhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcch--HHHHHHHHHHHHHHhcCChhhH
Q 001062 302 EYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW--KVRRAAAKCLAALIVSRPEMLS 365 (1167)
Q Consensus 302 ~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw--~vR~aA~~~l~~li~~~~~~l~ 365 (1167)
..+...- ...| .||..|..++..+.+..|+.+.
T Consensus 339 p~L~~~~-------------------------------~~HWn~~v~~l~~~vlk~l~e~d~~lF~ 373 (403)
T 3fga_B 339 PSLYRNS-------------------------------KTHWNKTIHGLIYNALKLFMEMNQKLFD 373 (403)
T ss_dssp HHHHHTT-------------------------------SCCSCHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHH-------------------------------HHccCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4332100 1134 7999999999988887775443
No 114
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=95.08 E-value=0.3 Score=52.08 Aligned_cols=181 Identities=13% Similarity=0.182 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHH-HHHHHHHHHHHhcCchhHh
Q 001062 385 NVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKV-GAFSVLRELVVVLPDCLAD 463 (1167)
Q Consensus 385 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~-~~~~~l~~l~~~~~~~l~~ 463 (1167)
.||.++++.+.+.++... .+.......+|+++..+..--+...+..|. ..+.++.+++..+++.+.+
T Consensus 44 ~vKkeiLkLiet~i~~~~------------d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~ 111 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSN------------DPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITA 111 (321)
T ss_dssp HHHHHHHHHHHHHHTTCS------------CHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHcCC------------CHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhh
Confidence 456677777766665432 122234567888887666655555555664 6688889999888888888
Q ss_pred hhhhhHHHHHH----hccc-CCCCchHHHHHHHHHHHHhccCCCCchh----hhhHhhHHHHHHHhcCCchHHHHHHHHH
Q 001062 464 HIGSLIPGIEK----SLND-KSSTSNLKIEALTFTRLVLSSHSPPVFH----PYIKALSSPVLAAVGERYYKVTAEALRV 534 (1167)
Q Consensus 464 ~l~~l~~~l~~----~l~d-~~~~~~~~~~al~~l~~l~~~~~~~~~~----~~l~~ll~~l~~~l~d~~~~v~~~al~~ 534 (1167)
+++.++..+.. .+++ -...++.|..=+.+++.+...+- ..+- +.+..++..++=++++...+|...++.+
T Consensus 112 ~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF-~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~i 190 (321)
T 1w9c_A 112 EIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCF-PAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQI 190 (321)
T ss_dssp GHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCT-THHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhH-HHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 88887777654 3332 23456789998999999887653 3332 2456677777888889999999999999
Q ss_pred HHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHH
Q 001062 535 CGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVK 578 (1167)
Q Consensus 535 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr 578 (1167)
+-++.+.+.....-...=+..|.-.++..++..+.+++-...-+
T Consensus 191 l~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~ 234 (321)
T 1w9c_A 191 LFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLT 234 (321)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHH
Confidence 99998877531100011135577788888888887655444333
No 115
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.05 E-value=0.28 Score=49.47 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=24.3
Q ss_pred HHHhcccCC-cchhHHHHHHHHHHHHhhCchHHHHHHH
Q 001062 1107 PYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLADFL 1143 (1167)
Q Consensus 1107 ~~~~~gl~D-~~di~~l~~~~l~~l~~~~p~~~~~~l~ 1143 (1167)
+++..-..| +.-||.-.-..|+-++..+|+.|...++
T Consensus 181 ~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 181 RRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 555555555 5667777777777777777777776555
No 116
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=94.86 E-value=0.69 Score=49.31 Aligned_cols=164 Identities=13% Similarity=0.224 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhh----ccCChhHH-HHHHHHHHHHHHhhCCCCCCccCCCCCchHH
Q 001062 344 KVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF----KEREENVK-MDVFNTFIELVRQTGNVTKGQIDNNELNPRW 418 (1167)
Q Consensus 344 ~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l----~d~~~~vr-~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~ 418 (1167)
.||+.-.+.+...+...++ .+.+.+.++|.|++.. +...+..| .+++.+++++++..+.
T Consensus 44 ~vKkeiLkLiet~i~~~~d-~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~--------------- 107 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSND-PQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG--------------- 107 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSC-HHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGG---------------
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHH---------------
Confidence 4667778888888877654 3345666677665442 23334444 4678889999988762
Q ss_pred HHHHHHHHHHHHHHHH----hcc---CChhhHHHHHHHHHHHHHhcCchh----HhhhhhhHHHHHHhcccCCCCchHHH
Q 001062 419 LLKQEVSKIVKSINRQ----LRE---KSIKTKVGAFSVLRELVVVLPDCL----ADHIGSLIPGIEKSLNDKSSTSNLKI 487 (1167)
Q Consensus 419 ~l~~~~~~l~~~l~~~----L~~---~~~~~r~~~~~~l~~l~~~~~~~l----~~~l~~l~~~l~~~l~d~~~~~~~~~ 487 (1167)
.+.+.+|.|++.++.. .++ ..|..|..-+.+|.++...+...+ .+++..++..+..++++. ..++..
T Consensus 108 ~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~--~r~V~e 185 (321)
T 1w9c_A 108 HITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHT--MRNVAD 185 (321)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCS--SHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCC--CchHHH
Confidence 4456777777666544 442 457899999999999998876654 357888899999999765 567888
Q ss_pred HHHHHHHHHhccCC--CC---c-hhhhhHhhHHHHHHHhcCCch
Q 001062 488 EALTFTRLVLSSHS--PP---V-FHPYIKALSSPVLAAVGERYY 525 (1167)
Q Consensus 488 ~al~~l~~l~~~~~--~~---~-~~~~l~~ll~~l~~~l~d~~~ 525 (1167)
.++..+..++++.. ++ . ++.|.-.++..+...+.|..+
T Consensus 186 ~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 186 TGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 88888877776542 11 1 123556677777777777654
No 117
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=94.79 E-value=2 Score=48.28 Aligned_cols=301 Identities=12% Similarity=0.158 Sum_probs=174.2
Q ss_pred hhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHH----HhcCC----------CChh--H-------HHHHHHHHHHhh
Q 001062 18 KDFRYMATSDLLNELNKESFKADADLEVKLSNIVV----QQLDD----------VAGD--V-------SGLAVKCLAPLV 74 (1167)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll----~~L~d----------~~~~--V-------r~~A~~~l~~l~ 74 (1167)
++++-.+|.+|...++.....++++....++.++- +.+.. +..+ + -+.+...+-.++
T Consensus 66 Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv 145 (449)
T 2npp_B 66 KEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFL 145 (449)
T ss_dssp CCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHHCCCCCCCSSCCSSSSCGGGCCCCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcccccCCCccccccccccchHHHHHHHHHHHHH
Confidence 45678999999999987666666655555555543 44321 1111 1 245555555554
Q ss_pred hh--cCh----hhH-HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHhhhccCCChhHH
Q 001062 75 KK--VSE----PRV-VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS-SLAQSIHTSLTPQLTKGITLKDMNTEIR 146 (1167)
Q Consensus 75 ~~--~~~----~~~-~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~-~~~~~~~~~i~p~Ll~~l~~~~~~~~v~ 146 (1167)
.. +.+ +.+ ..++.+|+..+.++++..|+.--..|..+...+... .+.+..+..++-+... ..+ ...--
T Consensus 146 ~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~---e~e-~~nGI 221 (449)
T 2npp_B 146 ESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIY---ETE-HHNGI 221 (449)
T ss_dssp TSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHH---TCS-CCSCH
T ss_pred HccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccC-CCCCH
Confidence 21 211 112 357788888888888888998888888887766442 3333333444333332 222 12234
Q ss_pred HHHHHHHHHHHHHhccchhHHH-HHHHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCh
Q 001062 147 CECLDILCDVLHKFGNLMSNDH-ERLLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKP 224 (1167)
Q Consensus 147 ~~~~~~L~~l~~~~g~~l~~~~-~~l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 224 (1167)
.+.+++++.++..|..-+.+.+ .-+...+++..+.... .--..=..|+..+...-+. +...++..++..--.. +.
T Consensus 222 aeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~-L~~~vi~~LLk~WP~t--ns 298 (449)
T 2npp_B 222 AELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST-LTEPVVMALLKYWPKT--HS 298 (449)
T ss_dssp HHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG-GHHHHHHHHHHTCCSS--CH
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH-hHHHHHHHHHHhCCCC--Cc
Confidence 5789999999988876665444 4567778888766543 2222333555555543222 3455666665443222 12
Q ss_pred HHHHHHHHHHHHHHHHh-hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHH--HHHHhCCccccccHHHHHHHHH
Q 001062 225 EMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALE--SFLLRCPRDISSYCDEILHLTL 301 (1167)
Q Consensus 225 ~~r~~~~~~l~~l~~~~-~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~--~l~~~~~~~~~~~l~~ii~~~~ 301 (1167)
......+.-++.++... |..|.+....++..+-.+++. .+-.|.|.|+..+. .++.. +..+-..+++.+.
T Consensus 299 ~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S---~hfqVAErAL~~w~N~~i~~l----i~~n~~~IlPii~ 371 (449)
T 2npp_B 299 PKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS---PHFQVAERALYYWNNEYIMSL----ISDNAAKILPIMF 371 (449)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTC---SCHHHHHHHHGGGGCHHHHHH----HHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHCCHHHHHH----HHhchhhhHHhhH
Confidence 22223455666666653 456777777788888888887 77888888876653 22211 2234445556655
Q ss_pred HhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcch--HHHHHHHHHHHHHHhcCChh
Q 001062 302 EYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASW--KVRRAAAKCLAALIVSRPEM 363 (1167)
Q Consensus 302 ~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw--~vR~aA~~~l~~li~~~~~~ 363 (1167)
..+...- ...| .||..|..++..+.+..|+.
T Consensus 372 p~L~~~s-------------------------------~~HWn~~V~~la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 372 PSLYRNS-------------------------------KTHWNKTIHGLIYNALKLFMEMNQKL 404 (449)
T ss_dssp HHHTSCT-------------------------------TCCSSTTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHH-------------------------------HHhcCHHHHHHHHHHHHHHHHHCHHH
Confidence 5442110 1234 69999999999888777643
No 118
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.34 E-value=0.0088 Score=62.19 Aligned_cols=39 Identities=10% Similarity=-0.060 Sum_probs=25.0
Q ss_pred hcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 001062 13 ITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKC 69 (1167)
Q Consensus 13 ~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~ 69 (1167)
..|+|+.+|..|...|- ...+..+++|++..||..|++.
T Consensus 59 l~d~~~~VR~~AA~~l~------------------~~~l~~L~~D~~~~VR~~aA~~ 97 (244)
T 1lrv_A 59 LADPFWERRAIAVRYSP------------------VEALTPLIRDSDEVVRRAVAYR 97 (244)
T ss_dssp TTCSSHHHHHHHHTTSC------------------GGGGGGGTTCSSHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHhCC------------------HHHHHHHccCcCHHHHHHHHHH
Confidence 47889999988877431 1124455567777777776654
No 119
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=94.26 E-value=8 Score=42.62 Aligned_cols=90 Identities=12% Similarity=0.204 Sum_probs=64.3
Q ss_pred HHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHH--HHHhccCCccccCCCCccchHHHHHHHHHHh
Q 001062 491 TFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE--LVRVLRPSVEGLGFDFKPYVQPIYNAIMSRL 568 (1167)
Q Consensus 491 ~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~--l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 568 (1167)
.-+..+++..++..|.+....+...+..|+++.++.|+..|+..+.+ ++..+ ..+.+.++|.++..+
T Consensus 273 ~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li-----------~~n~~~IlPii~p~L 341 (403)
T 3fga_B 273 NELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI-----------SDNAAKILPIMFPSL 341 (403)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH-----------HTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHH-----------HHhHHHHHHHHHHHH
Confidence 44667788787888888899999999999999999999999987743 22222 223344555544444
Q ss_pred h---cCCCCHHHHHHHHHHHHHHHHh
Q 001062 569 T---NQDQDQEVKECAISCMGLVIST 591 (1167)
Q Consensus 569 ~---~~d~~~~vr~~Ai~alg~l~~~ 591 (1167)
. .++=++.||..+..++..+...
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 2 2345789999999998887643
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.22 E-value=2.1 Score=42.09 Aligned_cols=146 Identities=12% Similarity=0.226 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhhhhHHHHHHhccc----CCCCchHHHHHHHHHH
Q 001062 419 LLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIGSLIPGIEKSLND----KSSTSNLKIEALTFTR 494 (1167)
Q Consensus 419 ~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~l~~~l~~~l~d----~~~~~~~~~~al~~l~ 494 (1167)
.++.++..+.+.+.. ..|..++.-+.+ ..+ +.+++|.+.+.+.+ ...+...-...+....
T Consensus 8 Elq~yf~~It~a~~~-------~~r~~aL~sL~~-----D~g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ 71 (196)
T 4atg_A 8 ELQLYFDKILSMIKS-------DMKDIAIECLEK-----ESG----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYF 71 (196)
T ss_dssp HHHHHHHHHHHHHTS-------TTHHHHHHHHHH-----CSS----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------HHHHHHHHHHhc-----CCC----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 345555555554443 346666544332 122 44444444433332 2223344555677788
Q ss_pred HHhccCCCCchhhhhHhhHHHHHHHhcCC---chHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcC
Q 001062 495 LVLSSHSPPVFHPYIKALSSPVLAAVGER---YYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQ 571 (1167)
Q Consensus 495 ~l~~~~~~~~~~~~l~~ll~~l~~~l~d~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~ 571 (1167)
+++.+-. -.+.||+.+++|.++.|+-.+ ...+|..|...++.+++..+.. +...-+++...+.+.+.+.
T Consensus 72 ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~-------y~~L~~RI~~tl~k~l~dp 143 (196)
T 4atg_A 72 SLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS-------YKTLAPRVLKTLKGVWMDP 143 (196)
T ss_dssp HHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT-------STTHHHHHHHHHHHHHTCT
T ss_pred HHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc-------CchHHHHHHHHHHHHHcCC
Confidence 8887643 467899999999999997422 1279999999999999887652 2334456777777777655
Q ss_pred CCCHHHHHHHHHHHHHH
Q 001062 572 DQDQEVKECAISCMGLV 588 (1167)
Q Consensus 572 d~~~~vr~~Ai~alg~l 588 (1167)
..+....-.|+.+++.+
T Consensus 144 ~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 144 NRSEDSQYGALYCLSIL 160 (196)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHh
Confidence 55666666666666654
No 121
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.94 E-value=0.011 Score=61.58 Aligned_cols=60 Identities=25% Similarity=0.257 Sum_probs=37.1
Q ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCC
Q 001062 142 NTEIRCECLDILCDVLHKFGNLMSNDHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKG 221 (1167)
Q Consensus 142 ~~~v~~~~~~~L~~l~~~~g~~l~~~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~ 221 (1167)
++.||..+...+ +. +.+...+.++++.||+.++..++ . ..+..+++++
T Consensus 183 d~~VR~aaa~~l-------~~----------~~L~~Ll~D~d~~VR~~aa~~l~-------~--------~~L~~L~D~~ 230 (244)
T 1lrv_A 183 EPEVRRIVASRL-------RG----------DDLLELLHDPDWTVRLAAVEHAS-------L--------EALRELDEPD 230 (244)
T ss_dssp SHHHHHHHHHHC-------CG----------GGGGGGGGCSSHHHHHHHHHHSC-------H--------HHHHHCCCCC
T ss_pred CHHHHHHHHHhC-------CH----------HHHHHHHcCCCHHHHHHHHHcCC-------H--------HHHHHccCCC
Confidence 688887777642 11 34666678888899998888764 1 2233454444
Q ss_pred CChHHHHHHHHHHH
Q 001062 222 AKPEMIRTNIQMVG 235 (1167)
Q Consensus 222 ~~~~~r~~~~~~l~ 235 (1167)
+.+|..+.+.+|
T Consensus 231 --~~VR~aa~~~L~ 242 (244)
T 1lrv_A 231 --PEVRLAIAGRLG 242 (244)
T ss_dssp --HHHHHHHHCCC-
T ss_pred --HHHHHHHHHHhC
Confidence 477777655443
No 122
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.65 E-value=14 Score=40.56 Aligned_cols=145 Identities=14% Similarity=0.218 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHH
Q 001062 484 NLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNA 563 (1167)
Q Consensus 484 ~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 563 (1167)
..+++.|.-+..++-.-.| ..++.+++.++....|++..++.....++++.+.. . ..++..+++.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dp----sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~---------~el~~~~l~~ 104 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDP----TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--D---------IELLLKLIAN 104 (386)
T ss_dssp THHHHHHHHHHHHHHTTCG----GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--C---------GGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHH
Confidence 4577777777776443222 25678888888888899999999999999988763 1 3367788887
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHHhhcCchhhHHHHHHHHHHhcCCCCCchhhHHHHH
Q 001062 564 IMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLHIDLTCVLEHV 643 (1167)
Q Consensus 564 ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~~L~~e~~r~~a~~al~~i~~~~~~~~~~~~~~~~ 643 (1167)
+...+. +.++.|..+++.|.+.+- +.+|..+.. +.......-.++. .+..+
T Consensus 105 L~~LL~--d~d~~V~K~~I~~~tslY-----------pl~f~~i~~---~~~~~~~~e~~W~-------------~m~~l 155 (386)
T 3o2t_A 105 LNMLLR--DENVNVVKKAILTMTQLY-----------KVALQWMVK---SRVISELQEACWD-------------MVSAM 155 (386)
T ss_dssp HHHHHT--CSSHHHHHHHHHHHHHHH-----------HHHHHHHHH---C-CCCHHHHHHHH-------------HHHHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHHHH-----------HHHHHHHhc---CCCcchhHHHHHH-------------HHHHH
Confidence 777775 567888888888888753 222333322 1111001111221 22222
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001062 644 IAELTAFLRKANRALRQATLGTMNSLVVA 672 (1167)
Q Consensus 644 l~~L~~~L~~~~~~lr~~al~~L~~l~~~ 672 (1167)
-..+...+...|.++|..++..+..++..
T Consensus 156 K~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 156 AGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 22333444567889999999999988754
No 123
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.47 E-value=21 Score=40.00 Aligned_cols=89 Identities=13% Similarity=0.221 Sum_probs=63.9
Q ss_pred HHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHH--HHHhccCCccccCCCCccchHHHHHHHHHH
Q 001062 490 LTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGE--LVRVLRPSVEGLGFDFKPYVQPIYNAIMSR 567 (1167)
Q Consensus 490 l~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~--l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 567 (1167)
+.-+..+++...+..|......+...+..|++..++.|+..|+..+.+ ++..+ ..+...++|.++..
T Consensus 305 L~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li-----------~~n~~~IlPii~p~ 373 (449)
T 2npp_B 305 LNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI-----------SDNAAKILPIMFPS 373 (449)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH-----------HTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHH-----------HhchhhhHHhhHHH
Confidence 345667788788888888899999999999999999999999987643 22222 22445566666665
Q ss_pred hhc---CCCCHHHHHHHHHHHHHHH
Q 001062 568 LTN---QDQDQEVKECAISCMGLVI 589 (1167)
Q Consensus 568 l~~---~d~~~~vr~~Ai~alg~l~ 589 (1167)
+.. ++=++.||..|..++..+.
T Consensus 374 L~~~s~~HWn~~V~~la~~vlk~l~ 398 (449)
T 2npp_B 374 LYRNSKTHWNKTIHGLIYNALKLFM 398 (449)
T ss_dssp HTSCTTCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 532 2346679998888888665
No 124
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.42 E-value=24 Score=38.78 Aligned_cols=273 Identities=10% Similarity=0.113 Sum_probs=140.0
Q ss_pred HHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHH
Q 001062 6 MAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM 85 (1167)
Q Consensus 6 i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l 85 (1167)
+..++........+.+.--|......+-. -++...+.+++.++..-.|++.+||+..+.-|+....+ ..+.+...
T Consensus 27 v~~lln~A~~~~~~~Kl~~L~q~~EL~l~----~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~~ 101 (386)
T 3o2t_A 27 VVDLLNQAALITNDSKITVLKQVQELIIN----KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLKL 101 (386)
T ss_dssp HHHHHHHHHHCCSTHHHHHHHHHHHHHHT----TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHHH
T ss_pred HHHHHHhhhccChHHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44555554432235677777777765432 25567889999999999999999999999999988764 34557888
Q ss_pred HHHHHHHhcCCCcchhcH--------HHHHHHHHHhhcCCc----hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHHH
Q 001062 86 TDKLCIKLLNGKDQHRDI--------ASIALKTIIAEVTTS----SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDIL 153 (1167)
Q Consensus 86 ~~~L~~~~~~~~~~~r~~--------a~~aL~~~~~~~~~~----~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~L 153 (1167)
++.|...+.+.+..+-.. .-.+++.++.+-... +.+.. +..+-..++..+.+. +..+|..++..+
T Consensus 102 l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~-m~~lK~~Il~~~ds~--n~GVrl~aiKFl 178 (386)
T 3o2t_A 102 IANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDM-VSAMAGDIILLLDSD--NDGIRTHAIKFV 178 (386)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHH-HHHHHHHHHHGGGCS--SHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH-HHHHHHHHHHHhccC--CcchHHHHHHHH
Confidence 888888887655433221 123333344332211 12221 223333444433322 466777777766
Q ss_pred HHHHHHhccchhH----HHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 001062 154 CDVLHKFGNLMSN----DHERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRT 229 (1167)
Q Consensus 154 ~~l~~~~g~~l~~----~~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~ 229 (1167)
..++-........ ..+. -..=+..+...++.++...++. .-..++..++..+..+..+....-+
T Consensus 179 e~VIl~qS~~~~d~~~p~~~~-~d~SL~~VP~nHp~L~~~~Le~-----------EA~~lLd~LL~~l~~~~iss~~l~a 246 (386)
T 3o2t_A 179 EGLIVTLSPRMADSEIPRRQE-HDISLDRIPRDHPYIQYNVLWE-----------EGKAALEQLLKFMVHPAISSINLTT 246 (386)
T ss_dssp HHHHHHTSCCCTTCCCCGGGT-TSCCGGGSCTTCSSSCHHHHHH-----------HHHHHHHHHHHHTTC--CCHHHHHH
T ss_pred HHHHHHhCCCCCCcccccccC-CCCCHhhCCCCCCcCCHHHHHH-----------HHHHHHHHHHHHHcccccccHHHHH
Confidence 6665443321100 0000 0000000111111111111100 1133455556666654433344556
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhc--CCCC---hhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhh
Q 001062 230 NIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSA--SEND---EELREYSLQALESFLLRCPRDISSYCDEILHLTLEYL 304 (1167)
Q Consensus 230 ~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~--~e~~---~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l 304 (1167)
.+.+++.|++.-|. |.+.+++.+...-.+. .... .-++...-..|..+..+ |.. .||-++|...+....
T Consensus 247 ~lnsLa~Iak~RP~----~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~-p~s-~~~~~~I~~~L~~Lg 320 (386)
T 3o2t_A 247 ALGSLANIARQRPM----FMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKH-PAS-LEFQAQITTLLVDLG 320 (386)
T ss_dssp HHHHHHHHHHHSGG----GHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTS-GGG-GGGHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcHH----HHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcC-CCc-hhhHHHHHHHHHHHc
Confidence 77888888887553 4567777766543220 0000 11334333444444543 322 378888888776644
No 125
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=88.31 E-value=33 Score=37.58 Aligned_cols=251 Identities=12% Similarity=0.142 Sum_probs=146.2
Q ss_pred hhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhc----CC----------CChh--H-------HHHHHHHHHHhh
Q 001062 18 KDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQL----DD----------VAGD--V-------SGLAVKCLAPLV 74 (1167)
Q Consensus 18 ~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L----~d----------~~~~--V-------r~~A~~~l~~l~ 74 (1167)
++.+-.+|.+|...++.....++++....++.++-.-+ .. +..+ + -+.+.+.+-.++
T Consensus 78 Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~NiFR~lPp~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv 157 (392)
T 2jak_A 78 KEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFL 157 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC---------------CCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcccccCCccccccccccCChhHHHHHHHHHHHH
Confidence 35678899999999988777788777777777765332 21 1111 1 233333343333
Q ss_pred hh--cChh----hH-HHHHHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHhhhccCCChhHH
Q 001062 75 KK--VSEP----RV-VEMTDKLCIKLLNGKDQHRDIASIALKTIIAEVTTS-SLAQSIHTSLTPQLTKGITLKDMNTEIR 146 (1167)
Q Consensus 75 ~~--~~~~----~~-~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~-~~~~~~~~~i~p~Ll~~l~~~~~~~~v~ 146 (1167)
.. .... .+ ..++.+|+..+.++++..|+.--..|..+...+... .+.++.+..++-+. +...+ ...--
T Consensus 158 ~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~f---iye~e-~~~GI 233 (392)
T 2jak_A 158 ESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRF---IYETE-HHNGI 233 (392)
T ss_dssp HCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH---HTSSC-CCSCH
T ss_pred HccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccC-CCCCH
Confidence 21 2211 11 246777888777888888888878787777665442 23333333333333 32222 12234
Q ss_pred HHHHHHHHHHHHHhccchhHHHHH-HHHHHhhhhcCChH-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCCh
Q 001062 147 CECLDILCDVLHKFGNLMSNDHER-LLSALLPQLSANQA-SVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKP 224 (1167)
Q Consensus 147 ~~~~~~L~~l~~~~g~~l~~~~~~-l~~~ll~~l~~~~~-~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 224 (1167)
.+.+++++.++..+..-+.+.+.. +...+++..+.... .--..=..|+..+...-+ .+...++..+++..-..+.
T Consensus 234 aeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tns-- 310 (392)
T 2jak_A 234 AELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTHS-- 310 (392)
T ss_dssp HHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHSSCSSCC--
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCc-hhHHHHHHHHHHhCCCCCc--
Confidence 588999999999988666655554 67788888766543 222223345555543221 2345566666654322222
Q ss_pred HHHHHHHHHHHHHHHHh-hhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHH
Q 001062 225 EMIRTNIQMVGALSRAV-GYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQAL 278 (1167)
Q Consensus 225 ~~r~~~~~~l~~l~~~~-~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l 278 (1167)
......+.-++.+.... +..|.+....+...+-.++.. .+-.|.|.|+..+
T Consensus 311 ~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S---~hfqVAErAL~~w 362 (392)
T 2jak_A 311 PKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS---PHFQVAERALYYW 362 (392)
T ss_dssp TTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC---SSHHHHHHHHGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHh
Confidence 22234456667777654 446777777788888888877 7778878776554
No 126
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=86.37 E-value=16 Score=38.92 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=82.4
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHhcCc----hhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccC-CC
Q 001062 428 VKSINRQLREKSIKTKVGAFSVLRELVVVLPD----CLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH-SP 502 (1167)
Q Consensus 428 ~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~----~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~-~~ 502 (1167)
+-.+++....++-.+-..|+.++..+...+.. .+..+++.++....+.|...+ --.|-.++.+|+.++..- ..
T Consensus 166 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N--YVTkRQSlKLLgelLldr~N~ 243 (341)
T 1upk_A 166 FYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN--YVTKRQSLKLLGELLLDRHNF 243 (341)
T ss_dssp GGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS--HHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc--chhHHHHHHHHHHHHhCchHH
Confidence 34556667777778888899999988776643 345567788888888776543 246788999999988532 12
Q ss_pred Cchhhhh--HhhHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Q 001062 503 PVFHPYI--KALSSPVLAAVGERYYKVTAEALRVCGELVRV 541 (1167)
Q Consensus 503 ~~~~~~l--~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~ 541 (1167)
..+..|+ +.-+..++..+.|++..++.+|+.++--++..
T Consensus 244 ~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 244 TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 2344566 45678888999999999999999999988753
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=85.95 E-value=18 Score=46.21 Aligned_cols=97 Identities=12% Similarity=0.178 Sum_probs=56.9
Q ss_pred HHHHHHHHhhccCCccchhhHHHHHhhhccccCcccchHHHHHhhcC-----C--ChhhHHHHHHHHHHHhccCChhhhh
Q 001062 929 EKILNLLFNHCESEEEGVRNVVAECLGKIALIEPAKLVPALKVRTTS-----S--AAFTRATVVIAIKYSIVERPEKIDE 1001 (1167)
Q Consensus 929 ~~i~~~L~~~~~~~~e~vr~~aa~~Lg~l~~~~~~~~lp~l~~~~~~-----~--~~~~R~~~~~~lk~~~~~~~~~~~~ 1001 (1167)
..+.+.+.+..+..+++-+.++..+||++.+. .-++.|.+++.. . ...+|..++.+++.+-.... .
T Consensus 439 ~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p---~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p----~ 511 (1056)
T 1lsh_A 439 QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP---NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP----R 511 (1056)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG---GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH----H
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh---hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch----H
Confidence 33444444444444556677899999999873 245667776531 1 23466778888885543221 1
Q ss_pred hhhHhHHHHHhhcc--CCChHHHHHHHHHHHHHHhcCch
Q 001062 1002 IIFPEISSFLMLIK--DQDRHVRRAAVLALSTFAHNKPN 1038 (1167)
Q Consensus 1002 ~l~~~i~~~l~~l~--d~d~~vr~~a~~~L~~~a~~~p~ 1038 (1167)
. .-+.+++... ..+.+||.+|+..|. ..+|.
T Consensus 512 ~---v~~il~~i~~n~~e~~EvRiaA~~~Lm---~t~P~ 544 (1056)
T 1lsh_A 512 K---VQEIVLPIFLNVAIKSELRIRSCIVFF---ESKPS 544 (1056)
T ss_dssp H---HHHHHHHHHHCTTSCHHHHHHHHHHHH---HTCCC
T ss_pred H---HHHHHHHHhcCCCCChHHHHHHHHHHH---HHCcC
Confidence 1 2223444442 467889999998774 44564
No 128
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=84.75 E-value=20 Score=42.11 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=75.4
Q ss_pred HHHHhccchh-HHHHHHHHHHhhh--hcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 001062 156 VLHKFGNLMS-NDHERLLSALLPQ--LSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQ 232 (1167)
Q Consensus 156 l~~~~g~~l~-~~~~~l~~~ll~~--l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~ 232 (1167)
.+...-..+. ..+..|+..++.. --.-+..+.+.-+.-|+.|+...+ .++..++..++..+..+. +.....-.
T Consensus 121 aLs~~Vs~Ld~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~-~yl~~vl~mLV~~F~~~~---~~~~~~H~ 196 (649)
T 3tj1_A 121 ILSSNINRIESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIP-KWWQDVSMILVSCFILPI---KQTVCHHD 196 (649)
T ss_dssp HHHHTGGGGCSGGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHGGGSCH---HHHHHHHH
T ss_pred HHHhhhhhcCchhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhccCCC---cccHHHHH
Confidence 3333344442 4667888888776 112233677788888888887665 588899999998887542 22223456
Q ss_pred HHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHH
Q 001062 233 MVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLT 300 (1167)
Q Consensus 233 ~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~ 300 (1167)
++..|.+..|... ..+.|.+.+.+-... +....-...+.-+-.+..+||.--...+.-|++-+
T Consensus 197 ~L~~Il~lvP~s~----~~L~~iL~~~FP~~~-~s~~~~~~Yv~NLLrl~~Y~PeL~~~Il~LIierl 259 (649)
T 3tj1_A 197 MLKYFLRMIPSSM----GFIDTYLAKFFPNKN-DTRRKLVNYTSNLLKLRGYCSELGFQIWSLLIEKI 259 (649)
T ss_dssp HHHHHHHHCGGGH----HHHHHHHHHTCCCTT-SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH----HHHHHHHHHhCCCCC-CchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 6777777655432 233444444333311 22223333455555667788743223444444433
No 129
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=81.23 E-value=53 Score=33.84 Aligned_cols=147 Identities=13% Similarity=0.106 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 5 QMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 5 ~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
.+..++........+.|--.|......+-. -|+...+++++.++..-.|++.+||+..+.-|+..... .++....
T Consensus 16 ~v~~lln~A~~~~~~~kl~~L~qa~el~~~----~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~ 90 (257)
T 3gs3_A 16 KVVDWCNELVIASPSTKCELLAKVQETVLG----SCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLPH 90 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTT----TTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH
T ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHHHHHc----cCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 355677777664447787777777765432 25678999999999988899999999999999887744 4567788
Q ss_pred HHHHHHHHhcCCCcchhc--------HHHHHHHHHHhhcCCc----hhHHHHHHHHHHHHHHhhhccCCChhHHHHHHHH
Q 001062 85 MTDKLCIKLLNGKDQHRD--------IASIALKTIIAEVTTS----SLAQSIHTSLTPQLTKGITLKDMNTEIRCECLDI 152 (1167)
Q Consensus 85 l~~~L~~~~~~~~~~~r~--------~a~~aL~~~~~~~~~~----~~~~~~~~~i~p~Ll~~l~~~~~~~~v~~~~~~~ 152 (1167)
.++.|...+.+++..+-. ++-.+|+.++.+-..+ +.+. .+..+-..+++.+.+. +..+|..++..
T Consensus 91 ~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~-~m~~lK~~Il~~~~s~--n~gvkl~~iKF 167 (257)
T 3gs3_A 91 VINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWN-ILSLIKAQILDMIDNE--NDGIRTNAIKF 167 (257)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHH-HHHHHHHHHHHGGGSS--CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH-HHHHHHHHHHHHHccC--CcchHHHHHHH
Confidence 899998888765544322 2223344444432211 2222 1233334444444332 56778777777
Q ss_pred HHHHHHH
Q 001062 153 LCDVLHK 159 (1167)
Q Consensus 153 L~~l~~~ 159 (1167)
+..++-.
T Consensus 168 ~e~vIl~ 174 (257)
T 3gs3_A 168 LEGVVVL 174 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776643
No 130
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=80.00 E-value=1.4e+02 Score=37.99 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhh--h--hcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHH
Q 001062 224 PEMIRTNIQMVGALSRAVGYR--F--GPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHL 299 (1167)
Q Consensus 224 ~~~r~~~~~~l~~l~~~~~~~--~--~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~ 299 (1167)
...|++++.++|++++..... . ...++.+...+.+.+.. .+.+-+-.++++|+++-. +..++.
T Consensus 409 ~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~---~~~~~~~~~LkaLGN~g~----------p~~l~~ 475 (1056)
T 1lsh_A 409 PILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR---AKEEEIVLALKALGNAGQ----------PNSIKK 475 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTC----------GGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc---CChHHHHHHHHHhhccCC----------hhHHHH
Confidence 467889999999999863211 1 12345555556566655 556667788999887742 244556
Q ss_pred HHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHHHHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhh
Q 001062 300 TLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKVRRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRF 379 (1167)
Q Consensus 300 ~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~vR~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l 379 (1167)
+.+++...... ..+..-+||.+|+.+|..+....|+.+.+ .+++.+
T Consensus 476 l~~~l~~~~~~---------------------------~~~~~~rvr~aAi~ALr~~~~~~p~~v~~-------il~~i~ 521 (1056)
T 1lsh_A 476 IQRFLPGQGKS---------------------------LDEYSTRVQAEAIMALRNIAKRDPRKVQE-------IVLPIF 521 (1056)
T ss_dssp HHTTSTTSSSC---------------------------CCCSCHHHHHHHHHTTTTGGGTCHHHHHH-------HHHHHH
T ss_pred HHHhhcCcccc---------------------------ccccchHHHHHHHHHHHHhhhhchHHHHH-------HHHHHh
Confidence 66665311000 01123489999999999888777654332 223333
Q ss_pred --ccCChhHHHHHHHHH
Q 001062 380 --KEREENVKMDVFNTF 394 (1167)
Q Consensus 380 --~d~~~~vr~~~~~~l 394 (1167)
+....+||..++..+
T Consensus 522 ~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 522 LNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp HCTTSCHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHH
Confidence 334567887766554
No 131
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=79.58 E-value=19 Score=38.46 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHH-----HHHHHHhcCCCChhHHHHHHHHHHHhhhhcC
Q 001062 4 LQMAAILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKL-----SNIVVQQLDDVAGDVSGLAVKCLAPLVKKVS 78 (1167)
Q Consensus 4 ~~i~~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i-----~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~ 78 (1167)
.-...+++|+.+.+.+.+-.|++.|.+.++.+. .-...+ +..|++...+.+++.|+-+.++++.+..++.
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~-----~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~ 192 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDK-----DLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD 192 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCT-----THHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcch-----HHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc
Confidence 345678899999888888999999999886432 222333 5667777788899999999999999987632
Q ss_pred hh----hHHHHHHHHHHHhcCCCcchhcHHHHH---HHHHHhhcCCchhHHHHHHH-----------HHHHHHHhhhcc-
Q 001062 79 EP----RVVEMTDKLCIKLLNGKDQHRDIASIA---LKTIIAEVTTSSLAQSIHTS-----------LTPQLTKGITLK- 139 (1167)
Q Consensus 79 ~~----~~~~l~~~L~~~~~~~~~~~r~~a~~a---L~~~~~~~~~~~~~~~~~~~-----------i~p~Ll~~l~~~- 139 (1167)
.- .-+.++.+|+..+.+.. +.+.-.| |..++...+.. ...+.+. .+..|+..|++.
T Consensus 193 Gm~gvvs~~~fI~~lyslv~s~~---~~V~k~AL~LL~v~V~~se~~--~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~ 267 (339)
T 3dad_A 193 GMLGVVAHSDTIQWLYTLCASLS---RLVVKTALKLLLVFVEYSENN--APLFIRAVNSVASTTGAPPWANLVSILEEKN 267 (339)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHHCCCTTHHHHHHHTTTT
T ss_pred cccchhCCHHHHHHHHHHHcCcc---HHHHHHHHHHHHHHHccCccc--chHHHHHHHHhhhccCCCcHHHHHHHHhccC
Confidence 10 12567888888877432 4443333 34445444322 1111111 134556666521
Q ss_pred CCChhHHHHHHHHHHHHHHHhc
Q 001062 140 DMNTEIRCECLDILCDVLHKFG 161 (1167)
Q Consensus 140 ~~~~~v~~~~~~~L~~l~~~~g 161 (1167)
..+.+++..++.++..++...+
T Consensus 268 ~~D~elq~~amtLIN~lL~~ap 289 (339)
T 3dad_A 268 GADPELLVYTVTLINKTLAALP 289 (339)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHHHhcCC
Confidence 1256677777777776665543
No 132
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=78.37 E-value=65 Score=33.16 Aligned_cols=202 Identities=13% Similarity=0.125 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCC
Q 001062 186 VRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASE 265 (1167)
Q Consensus 186 vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e 265 (1167)
.|-..+.-+..++-.-...+++++++.++....+ . +.+.|+....+++..++.-+ .+++.+++.+...+.+
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~-~-~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d--- 101 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHD-S-NMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRD--- 101 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGC-S-CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccC-C-hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcC---
Confidence 4444444444555444455788888888885433 3 36889888888888875532 3667788888888876
Q ss_pred CChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccchhhcCCCCCCCCcchHH
Q 001062 266 NDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYLSYDPNFTDNMEEDSDDEAYEEEEEDESANEYTDDEDASWKV 345 (1167)
Q Consensus 266 ~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l~~dp~~~~~~~~d~~~~~~~~~~d~~~~~~~~dddd~sw~v 345 (1167)
+++.+...+.+++.+ +.+.+++++..+|+-. ++.+..|.
T Consensus 102 ~d~~V~K~~I~~~~~---------------iY~~~l~~i~~~~~~~-------------------------~~~~~~W~- 140 (257)
T 3gs3_A 102 NSAQVIKRVIQACGS---------------IYKNGLQYLCSLMEPG-------------------------DSAEQAWN- 140 (257)
T ss_dssp SCHHHHHHHHHHHHH---------------HHHHHHHHHTTSSSCC-------------------------HHHHHHHH-
T ss_pred CCHHHHHHHHHHHHH---------------HHHHHHHHHhcCCCCc-------------------------chHHHHHH-
Confidence 778877777766554 3456667766444310 00112354
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHh-hCC-CCCCcc--CCC-----CCch
Q 001062 346 RRAAAKCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQ-TGN-VTKGQI--DNN-----ELNP 416 (1167)
Q Consensus 346 R~aA~~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~-~~~-~~~~~~--~~~-----~~~p 416 (1167)
. +..+=..++..+...++.||..+++.+..++-. +.+ ....++ +.+ .+-|
T Consensus 141 ---------~------------m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp 199 (257)
T 3gs3_A 141 ---------I------------LSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCT 199 (257)
T ss_dssp ---------H------------HHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCC
T ss_pred ---------H------------HHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCC
Confidence 1 111112233445667899999999998887642 221 111111 111 0111
Q ss_pred ---HHHHHHHHHHHHHHHHHHhccCC--hhhHHHHHHHHHHHHHhcC
Q 001062 417 ---RWLLKQEVSKIVKSINRQLREKS--IKTKVGAFSVLRELVVVLP 458 (1167)
Q Consensus 417 ---~~~l~~~~~~l~~~l~~~L~~~~--~~~r~~~~~~l~~l~~~~~ 458 (1167)
...|+..-..++..+...+.++. ...-.+++..|..++..-|
T Consensus 200 ~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP 246 (257)
T 3gs3_A 200 LFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRP 246 (257)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCc
Confidence 14567777778887777766542 2233345555556655443
No 133
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=76.24 E-value=96 Score=33.99 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHH
Q 001062 490 LTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCG 536 (1167)
Q Consensus 490 l~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~ 536 (1167)
+.-+..+++...++.|.+....+...+..|++..++.|+..|+..+.
T Consensus 317 L~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 317 LNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 44577778888888888899999999999999999999999987764
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=68.59 E-value=59 Score=29.94 Aligned_cols=90 Identities=11% Similarity=0.141 Sum_probs=59.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HHHH
Q 001062 351 KCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIV 428 (1167)
Q Consensus 351 ~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~l~ 428 (1167)
.-+..++...+. --...+..|.++++.+++.+...++..+..+++..|. .+...+ ...+
T Consensus 27 leicD~I~~~~~----~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~---------------~f~~evas~~Fl 87 (140)
T 3ldz_A 27 LDICDKVGQSRT----GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK---------------IFHLEVCSRDFA 87 (140)
T ss_dssp HHHHHHHTTSTT----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH---------------HHHHHHSSHHHH
T ss_pred HHHHHHHHCCCc----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH---------------HHHHHHhhHHHH
Confidence 334555665542 1234556677889889999999999999999988762 222221 2333
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHhcCc
Q 001062 429 KSINRQLREKSIKTKVGAFSVLRELVVVLPD 459 (1167)
Q Consensus 429 ~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~ 459 (1167)
..+.+.++..++.+|.-++.++..+...+++
T Consensus 88 ~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 88 SEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3334444456778999999999999877654
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=66.28 E-value=33 Score=31.62 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch--hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCc
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l--~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~ 287 (1167)
+..+.+.+++.+ ......++.++.++++.||..|...+ ...+.-+...+.. .+++|++-++..+..|...++.
T Consensus 44 ~rai~Krl~~~n--~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~---~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 44 LRSIMRRVNHKD--PHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK---GHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHTCSS--HHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCC--hHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHhCC
Confidence 333445555543 34566678888888888888765433 2334444444444 5789999999999999987765
Q ss_pred c
Q 001062 288 D 288 (1167)
Q Consensus 288 ~ 288 (1167)
+
T Consensus 119 ~ 119 (140)
T 3ldz_A 119 D 119 (140)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=65.76 E-value=1.8e+02 Score=32.77 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=63.8
Q ss_pred ChhHHHHHHHHHHHHHHHhc---c---chhHHHHHHH-HHHhhhhcCChHHHHHHHHHHHHHHHhhc--CHHHHHHHHH-
Q 001062 142 NTEIRCECLDILCDVLHKFG---N---LMSNDHERLL-SALLPQLSANQASVRKKSVSCIASLASSL--SDDLLAKATI- 211 (1167)
Q Consensus 142 ~~~v~~~~~~~L~~l~~~~g---~---~l~~~~~~l~-~~ll~~l~~~~~~vrk~a~~~l~~l~~~~--~~~~~~~l~~- 211 (1167)
+.++....+..+.+++..-+ . .|... +... ..+...+..+++....+|..+++.++... .++.+..++.
T Consensus 91 ~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~-~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~~~~~l~~l~~~ 169 (480)
T 1ho8_A 91 NEDCKKSVQNLIAELLSSDKYGDDTVKFFQED-PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKN 169 (480)
T ss_dssp CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHC-TTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhC-cccchHHHHHHhcccchHHHHHHHHHHHHHhccCCccHhHHHHHhhh
Confidence 46667777777777776543 1 11100 1111 12222334556677778887777765322 3345566666
Q ss_pred -HHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhh--hhcchhhhHHHHHHHh
Q 001062 212 -EVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR--FGPHLGDTVPVLIDYC 260 (1167)
Q Consensus 212 -~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~p~l~~lvp~l~~~l 260 (1167)
-++..+++... .+.+..+++++..+++....| |-..=+.++|.++..+
T Consensus 170 ~~~~~~L~~~~~-~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il 220 (480)
T 1ho8_A 170 NNLINILQNIEQ-MDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKIL 220 (480)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHhccccC-CchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHH
Confidence 56666765432 244667899999998875544 2222233556655443
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=64.11 E-value=38 Score=32.19 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=49.8
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchh--hhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCc
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG--DTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~--~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~ 287 (1167)
+..|.+.+++.+ ..+...++.++..+++.||..|...+. ..+.-+...+... .+++||+-++..+..|...++.
T Consensus 54 ~ral~krl~~~n--~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~--~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 54 LKAIMKRVNHKV--PHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK--AHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHTCSS--HHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHHHhcC
Confidence 344455565543 356667888888888888887764332 2444444444332 5679999999999999988775
Q ss_pred c
Q 001062 288 D 288 (1167)
Q Consensus 288 ~ 288 (1167)
+
T Consensus 130 ~ 130 (163)
T 1x5b_A 130 D 130 (163)
T ss_dssp C
T ss_pred C
Confidence 3
No 138
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=63.96 E-value=85 Score=29.02 Aligned_cols=113 Identities=7% Similarity=0.063 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhH-HHHHHH
Q 001062 181 ANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTV-PVLIDY 259 (1167)
Q Consensus 181 ~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lv-p~l~~~ 259 (1167)
++++.+..-+.-|+...- .-..++..+.+.+.+.+ .+.+-.++.++.+|++.+|..|.+++...+ +.+.+.
T Consensus 22 nSk~~I~~LT~~a~~~~~------~a~~Iv~~i~~~i~k~~--p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~ 93 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENIS------CAQYFVDAIESRIEKCM--PKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRT 93 (144)
T ss_dssp CCHHHHHHHHHHHHHTGG------GHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCC--HhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 454555554444443221 23456666666676553 467888999999999999876666554433 333344
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhCCccccccHHHHHHHHHHhh
Q 001062 260 CTSASENDEELREYSLQALESFLLRCPRDISSYCDEILHLTLEYL 304 (1167)
Q Consensus 260 l~~~~e~~~e~re~al~~l~~l~~~~~~~~~~~l~~ii~~~~~~l 304 (1167)
... -+++.|....+.+..|-++.|....-|=++.+.-+-..+
T Consensus 94 ~~~---~d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l 135 (144)
T 1sz9_A 94 YLL---VDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFL 135 (144)
T ss_dssp HHT---SCHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHH
T ss_pred HHh---CCHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHH
Confidence 444 568899999999999987755432223344454444444
No 139
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=63.95 E-value=49 Score=30.84 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=61.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HHHH
Q 001062 351 KCLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIV 428 (1167)
Q Consensus 351 ~~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~l~ 428 (1167)
.-+..++...+. --...+..|.++++.+++.|..-++..+..+++..|. .|...+ ...+
T Consensus 33 leicD~I~~~~~----~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~---------------~fh~eias~~Fl 93 (149)
T 3g2s_A 33 NGFCEQLNEDFE----GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK---------------RFHDEVGKFRFL 93 (149)
T ss_dssp HHHHHHGGGSSS----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH---------------HHHHHHTSHHHH
T ss_pred HHHHHHHHCCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH---------------HHHHHHhhHHHH
Confidence 344455655542 1234555677889999999999999999999998762 232221 3444
Q ss_pred HHHHHHhcc------CChhhHHHHHHHHHHHHHhcCc
Q 001062 429 KSINRQLRE------KSIKTKVGAFSVLRELVVVLPD 459 (1167)
Q Consensus 429 ~~l~~~L~~------~~~~~r~~~~~~l~~l~~~~~~ 459 (1167)
..+.+.+.+ .+.+||.-++.++..+...+++
T Consensus 94 ~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 94 NELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 555566543 3567999999999999988765
No 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=63.44 E-value=45 Score=31.68 Aligned_cols=74 Identities=9% Similarity=0.103 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhhh--hhHHHHHHhcccCCCCchHHHHHHHHHHHHhcc
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHIG--SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1167)
...++.|.+.|+.+++.+...++.+|..++..++..|...+. .++..+.+.+..+ .+..++..++.++..-...
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~-~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK-AHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHH
Confidence 456677888888889999999999999999999887754332 2555555555432 3467888877777665543
No 141
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=63.37 E-value=52 Score=33.39 Aligned_cols=90 Identities=12% Similarity=0.098 Sum_probs=65.7
Q ss_pred HHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHhhccCCChHHHHHHHHHHH
Q 001062 951 AECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLMLIKDQDRHVRRAAVLALS 1030 (1167)
Q Consensus 951 a~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~~l~d~d~~vr~~a~~~L~ 1030 (1167)
...+|.+...+|+...+.+.+.+.+++.-+|.+++..+-....+ ......+..+...+.|++.=|+.+...+|.
T Consensus 118 ~~~~g~~~~~~p~~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~------~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr 191 (232)
T 3jxy_A 118 PTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQK------MDEELLFWIIGQLHSSKEFFIQKAIGWVLR 191 (232)
T ss_dssp TTHHHHHHHHCGGGGGGTHHHHHHSSCHHHHHHHHHTTTTCGGG------CCHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhC------CCHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45678888888877888899999998999887777654211111 111223333445778999999999999999
Q ss_pred HHHhcCchhhhchhhh
Q 001062 1031 TFAHNKPNLIKGLLPE 1046 (1167)
Q Consensus 1031 ~~a~~~p~~~~~~l~~ 1046 (1167)
.+....|+.+.+++.+
T Consensus 192 ~~~k~~p~~v~~fl~~ 207 (232)
T 3jxy_A 192 EYAKTNPDVVWEYVQN 207 (232)
T ss_dssp HHTTTCHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHH
Confidence 9999999998888754
No 142
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=62.53 E-value=1.7e+02 Score=31.27 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=79.8
Q ss_pred hhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHh
Q 001062 377 DRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVV 456 (1167)
Q Consensus 377 ~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~ 456 (1167)
+...-++=.|-.+++.++.+++..-.. .....|.......+....+.+.+++--+|..++.+|+++...
T Consensus 171 ~yv~~~~FdiasDAf~TfkelLt~Hk~-----------lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLld 239 (341)
T 1upk_A 171 RYVEMSTFDIASDAFATFKDLLTRHKL-----------LSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLD 239 (341)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHSSHH-----------HHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHS
T ss_pred HHhcCCCchHHHHHHHHHHHHHhccHH-----------HHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhC
Confidence 444566778889999999998764210 011356677788888888999999988999999999999764
Q ss_pred c--CchhHhhhh--hhHHHHHHhcccCCCCchHHHHHHHHHHHHhcc
Q 001062 457 L--PDCLADHIG--SLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1167)
Q Consensus 457 ~--~~~l~~~l~--~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1167)
- ..-+..|+. .-+..++..|+|+ +..++.+|+..+..++.+
T Consensus 240 r~N~~vM~~Yis~~~nLkl~M~LL~d~--sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 240 RHNFTIMTKYISKPENLKLMMNLLRDK--SRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp GGGHHHHHHHTTCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHhCCHHHHHHHHHHhcCc--hhchhhhhhhheeeeeeC
Confidence 2 122334443 3366788888887 468999999999988764
No 143
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.60 E-value=1e+02 Score=28.59 Aligned_cols=89 Identities=15% Similarity=0.180 Sum_probs=61.6
Q ss_pred HHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HHHHH
Q 001062 352 CLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVK 429 (1167)
Q Consensus 352 ~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~l~~ 429 (1167)
-+..++...+. --...+-.|.++++.+++.|..-++..+..+++..|. .+...+ ...+.
T Consensus 24 eicD~I~~~~~----~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~---------------~fh~evas~~Fl~ 84 (148)
T 1mhq_A 24 NFCEQVNTDPN----GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGE---------------KFHSEVAKFRFLN 84 (148)
T ss_dssp HHHHHHHHSSH----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH---------------HHHHHHTSHHHHH
T ss_pred HHHHHHHcCCc----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH---------------HHHHHHhhHHHHH
Confidence 34455555442 1234555677889999999999999999999998762 333322 45556
Q ss_pred HHHHHhcc------CChhhHHHHHHHHHHHHHhcCc
Q 001062 430 SINRQLRE------KSIKTKVGAFSVLRELVVVLPD 459 (1167)
Q Consensus 430 ~l~~~L~~------~~~~~r~~~~~~l~~l~~~~~~ 459 (1167)
.+.+.+.. .+..||.-++.++..+...+++
T Consensus 85 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 66666653 2567899999999999888765
No 144
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=60.30 E-value=3.7e+02 Score=34.60 Aligned_cols=144 Identities=10% Similarity=0.109 Sum_probs=77.8
Q ss_pred hccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcC
Q 001062 379 FKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLP 458 (1167)
Q Consensus 379 l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~ 458 (1167)
++++++.|+.-....|..+..... .. +-..++..+.....+.+..-.-.++.+|..++...|
T Consensus 409 l~S~~~~v~~Fg~~lY~~lF~~fd---------------~~---~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~ 470 (1323)
T 3s4w_B 409 FHSQDQRIILFGSLLYKYAFKFFD---------------TY---CQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNA 470 (1323)
T ss_dssp HTSSSHHHHHHHHHHHHHHHHSSC---------------HH---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCH
T ss_pred HhCCCHHHHHHHHHHHHHHHHhcc---------------ch---hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCH
Confidence 477888887666666666555431 11 124555555555544444444568999999998877
Q ss_pred chhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHH
Q 001062 459 DCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGEL 538 (1167)
Q Consensus 459 ~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l 538 (1167)
..+.++-. ++..|+..+.+-+ ...+|. .+..++.++-..+.+.-...-+.+.=.+-+.+.....+.+.-++-..-.+
T Consensus 471 ~~l~~~a~-~l~giLD~l~~l~-~~QiRk-lf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~ 547 (1323)
T 3s4w_B 471 SAMRLNAA-FVKGILDYLENMS-PQQIRK-IFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTM 547 (1323)
T ss_dssp HHHHHTHH-HHHGGGGGGGGCC-HHHHHH-HHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHH-HHHHHHHhhcCCC-HHHHHH-HHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHH
Confidence 76655333 4555666665432 122333 35566665432222211112244555666777777666655444433344
Q ss_pred HHhcc
Q 001062 539 VRVLR 543 (1167)
Q Consensus 539 ~~~~~ 543 (1167)
+..+.
T Consensus 548 v~~~~ 552 (1323)
T 3s4w_B 548 AGIMA 552 (1323)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 44443
No 145
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=59.67 E-value=38 Score=31.58 Aligned_cols=79 Identities=6% Similarity=0.008 Sum_probs=53.9
Q ss_pred hhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhc----CCCCHHHHHHHHHHHH
Q 001062 511 ALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTN----QDQDQEVKECAISCMG 586 (1167)
Q Consensus 511 ~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~----~d~~~~vr~~Ai~alg 586 (1167)
..+..+.+.+++++++++..|+.++..+++++|+..... -.-..+++. +...+.. ...+.+||++.+..+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~e-ias~~Fl~e----L~kl~~~k~~~~~~~~~Vk~kil~li~ 122 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDE-VGKFRFLNE----LIKVVSPKYLGSRTSEKVKNKILELLY 122 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHH-HTSHHHHHH----HHHHHCTTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHH-HhhHHHHHH----HHHHHcccccCCCCCHHHHHHHHHHHH
Confidence 345677788888999999999999999999887632000 001234444 3344432 1357899999999999
Q ss_pred HHHHhcCc
Q 001062 587 LVISTFGD 594 (1167)
Q Consensus 587 ~l~~~~g~ 594 (1167)
.+...++.
T Consensus 123 ~W~~~f~~ 130 (149)
T 3g2s_A 123 SWTVGLPE 130 (149)
T ss_dssp HHHHHCTT
T ss_pred HHHHHhCC
Confidence 99877754
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=57.00 E-value=64 Score=30.88 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=54.8
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch--hhhHHHHHHHhhhc---CCCChhHHHHHHHHHHHHHHh
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSA---SENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l--~~lvp~l~~~l~~~---~e~~~e~re~al~~l~~l~~~ 284 (1167)
+..|.+.+++.+ ..+...++.++.++++.||..|...+ ...+.-+...+... ...+.+||+-++..+..|...
T Consensus 52 ~ral~krl~~~n--~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 52 VRLLAHKIQSPQ--EWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHTCSS--HHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555566543 35677788888889999888776433 22344455554321 114678999999999999998
Q ss_pred CCccccccHHHHHHH
Q 001062 285 CPRDISSYCDEILHL 299 (1167)
Q Consensus 285 ~~~~~~~~l~~ii~~ 299 (1167)
++.+ |.+.+....
T Consensus 130 f~~~--~~i~~~y~~ 142 (171)
T 1juq_A 130 LPEE--AKIKDAYHM 142 (171)
T ss_dssp CTTC--HHHHHHHHH
T ss_pred cCCC--cHHHHHHHH
Confidence 8753 334443333
No 147
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=56.79 E-value=94 Score=29.67 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=59.8
Q ss_pred HHHHHHhcCChhhHHHHHHHhhHHHhhhccCChhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHHH--HHHHH
Q 001062 352 CLAALIVSRPEMLSKLYEEACPKLIDRFKEREENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQEV--SKIVK 429 (1167)
Q Consensus 352 ~l~~li~~~~~~l~~~~~~i~p~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~~--~~l~~ 429 (1167)
-+..++...+.. -...+-.|.++++.+++.|..-++..+..+++..|. .+...+ ...+.
T Consensus 36 eicD~I~~~~~~----~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~---------------~Fh~evas~~Fl~ 96 (171)
T 1juq_A 36 GFCDQINKELEG----PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGR---------------RFHNEVGKFRFLN 96 (171)
T ss_dssp HHHHHHHHSTTH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH---------------HHHHHHTSHHHHH
T ss_pred HHHHHHHcCCcc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH---------------HHHHHHhhHHHHH
Confidence 344555544421 234455677889999999999999999999998652 333222 34455
Q ss_pred HHHHHhcc------CChhhHHHHHHHHHHHHHhcCc
Q 001062 430 SINRQLRE------KSIKTKVGAFSVLRELVVVLPD 459 (1167)
Q Consensus 430 ~l~~~L~~------~~~~~r~~~~~~l~~l~~~~~~ 459 (1167)
.+.+.+.. .+.+||.-++.++..+...+++
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 55555542 2467999999999999988765
No 148
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=55.50 E-value=20 Score=36.15 Aligned_cols=94 Identities=7% Similarity=0.054 Sum_probs=68.4
Q ss_pred cchhhHHHHHhhhccccCcccchHHHHHhhcCCChhhHHHHHHHHHHHhccCChhhhhhhhHhHHHHHh-hccCCChHHH
Q 001062 944 EGVRNVVAECLGKIALIEPAKLVPALKVRTTSSAAFTRATVVIAIKYSIVERPEKIDEIIFPEISSFLM-LIKDQDRHVR 1022 (1167)
Q Consensus 944 e~vr~~aa~~Lg~l~~~~~~~~lp~l~~~~~~~~~~~R~~~~~~lk~~~~~~~~~~~~~l~~~i~~~l~-~l~d~d~~vr 1022 (1167)
-++....+.++|.++..+|+.+.+.+.+-+.+++.-+|.+++...-....+ +....+ -+++. .+.|++.=||
T Consensus 104 Wd~~D~~a~~~~~~~~~~~~~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~------~~~~~~-~~i~~~~~~d~~~yV~ 176 (220)
T 2b6c_A 104 WDSVDAWRKFFGSWVALHLTELPTIFALFYGAENFWNRRVALNLQLMLKEK------TNQDLL-KKAIIYDRTTEEFFIQ 176 (220)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGHHHHHHHHTTCSSHHHHHHHHHTTTTCGGG------CCHHHH-HHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHC------CCHHHH-HHHHHHhCCChHHHHH
Confidence 344444446788888888887888899999998999887777644222111 122222 33444 7889999999
Q ss_pred HHHHHHHHHHHhcCchhhhchh
Q 001062 1023 RAAVLALSTFAHNKPNLIKGLL 1044 (1167)
Q Consensus 1023 ~~a~~~L~~~a~~~p~~~~~~l 1044 (1167)
++...+|..+....|+.+.+++
T Consensus 177 kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 177 KAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHH
Confidence 9999999999999999888777
No 149
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=55.29 E-value=54 Score=30.40 Aligned_cols=96 Identities=11% Similarity=0.121 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhh----cchhhhHHHHHHHhh
Q 001062 186 VRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFG----PHLGDTVPVLIDYCT 261 (1167)
Q Consensus 186 vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~----p~l~~lvp~l~~~l~ 261 (1167)
+.+..++.|+.++....+ .-..++..+.+.+++.. .+.+-.++.++.+|++..+.+.+ +|.+...+.+.+.+.
T Consensus 21 ~S~~~I~~LT~~a~~~~~-~~~~IV~~~~~~i~k~~--~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~ 97 (145)
T 3d9j_A 21 ISKAKMTQITKAAIKAIK-FYKHVVQSVEKFIQKCK--PEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQ 97 (145)
T ss_dssp CCHHHHHHHHHHHHHTGG-GHHHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCC--ccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHH
Confidence 334445555555543211 23556666666676654 36788999999999999887433 444444344333332
Q ss_pred hcCCCChhHHHHHHHHHHHHHHh
Q 001062 262 SASENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 262 ~~~e~~~e~re~al~~l~~l~~~ 284 (1167)
..-..+++.|......+..|-++
T Consensus 98 ~~~~~~~~~r~kl~rLl~iW~~r 120 (145)
T 3d9j_A 98 NLYRCPGDDKSKIVRVLNLWQKN 120 (145)
T ss_dssp HHTSSCGGGHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhcCC
Confidence 21013478888888888888753
No 150
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=54.95 E-value=87 Score=28.92 Aligned_cols=90 Identities=6% Similarity=0.054 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHH-HhhhcCCCc
Q 001062 619 TAVKAFAVIAASPLHIDLTCVLEHVIAELTAFLRKANRALRQATLGTMNSLVVAYGDKIGASAYEVIIVE-LSTLISDSD 697 (1167)
Q Consensus 619 ~a~~al~~i~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~lr~~al~~L~~l~~~~~~~~~~~~~~~~l~~-l~~~l~~~d 697 (1167)
..+..++.+|... ..+...++..+...+.+.....|..++-.+..|+++++..+.. .+...+.. +.......|
T Consensus 25 ~~I~~LT~~a~~~-----~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~-~F~~~l~~~f~~~~~~~d 98 (144)
T 1sz9_A 25 PIITTLTKLAEEN-----ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTI-YFSRNLFNLYKRTYLLVD 98 (144)
T ss_dssp HHHHHHHHHHHHT-----GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHH-HHHTTHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHHHhCC
Confidence 3455666666321 3466788888889999999999999999999999998864321 12221111 111222234
Q ss_pred hhhHHHHHHHHHHHhhc
Q 001062 698 LHMTALALELCCTLMAD 714 (1167)
Q Consensus 698 ~~~~~~al~~l~~l~~~ 714 (1167)
...+.....++..+-+.
T Consensus 99 ~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 99 NTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 55566666666555444
No 151
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=54.77 E-value=59 Score=30.26 Aligned_cols=77 Identities=16% Similarity=0.024 Sum_probs=54.8
Q ss_pred hhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccch--HHHHHHHHHHhhcC----CCCHHHHHHHHHH
Q 001062 511 ALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYV--QPIYNAIMSRLTNQ----DQDQEVKECAISC 584 (1167)
Q Consensus 511 ~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l--~~l~~~ll~~l~~~----d~~~~vr~~Ai~a 584 (1167)
..+..+.+.++.++++++..||.++..+++++|+. |...+ ...++.+...+..+ ..+.+||++.+..
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~-------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 110 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK-------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEI 110 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHH
Confidence 34566777888899999999999999999998763 21111 34444444445421 3578999999999
Q ss_pred HHHHHHhcCc
Q 001062 585 MGLVISTFGD 594 (1167)
Q Consensus 585 lg~l~~~~g~ 594 (1167)
+..+...++.
T Consensus 111 i~~W~~~f~~ 120 (148)
T 1mhq_A 111 LFSWTVWFPE 120 (148)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHcCC
Confidence 9998877654
No 152
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.28 E-value=69 Score=32.29 Aligned_cols=74 Identities=11% Similarity=0.210 Sum_probs=46.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcch--hhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCcc
Q 001062 211 IEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHL--GDTVPVLIDYCTSASENDEELREYSLQALESFLLRCPRD 288 (1167)
Q Consensus 211 ~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l--~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~~ 288 (1167)
..|.+.+++.+ ..+...++.++.++++++|..|...+ ...+..+...+... .+.+|++-.+..+..|...++.+
T Consensus 48 ral~krl~~~n--~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~--~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 48 NSIKKKVNDKN--PHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ--VEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHTCSS--HHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCC--HHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhCCC
Confidence 33445555443 34566677777888887777654332 22333333334332 56789999999999999888764
No 153
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=52.23 E-value=1.2e+02 Score=27.47 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=66.4
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhh----
Q 001062 168 HERLLSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGY---- 243 (1167)
Q Consensus 168 ~~~l~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~---- 243 (1167)
.+.-+...++.|++.+..++..+.-|+...- .-..++..+.+.+++.+ .+.|...+.++..++..+..
T Consensus 6 ~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~------~a~~Iv~~i~~~l~~~~--~~~KL~~LYL~ndIl~ns~~~~~~ 77 (132)
T 4flb_A 6 LESSLDRKFQSVTNTMESIQGLSSWCIENKK------HHSTIVYHWMKWLRRSA--YPHRLNLFYLANDVIQNCKRKNAI 77 (132)
T ss_dssp HHHHHHHHHHHCCSSHHHHHHHHHHHHHTGG------GHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTTTTTCT
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHcCC--hhhHHHHHHHHHHHHHHhcccChH
Confidence 3445555667777777778777777765432 12445666666666543 46788889999999998754
Q ss_pred hhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 001062 244 RFGPHLGDTVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 244 ~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~ 284 (1167)
.|.+.+..++|.++..+. +++.|......+..|-++
T Consensus 78 ~f~~~f~~~l~~~~~~~~-----~~~~~~kl~~ll~iW~~r 113 (132)
T 4flb_A 78 IFRESFADVLPEAAALVK-----DPSVSKSVERIFKIWEDR 113 (132)
T ss_dssp HHHHHHHTTHHHHHHTTC-----STTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHhccC
Confidence 344444555555554332 356777778888888753
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.15 E-value=69 Score=32.11 Aligned_cols=87 Identities=8% Similarity=0.179 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchh--hhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHhCCc
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG--DTVPVLIDYCTSASENDEELREYSLQALESFLLRCPR 287 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~--~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~~ 287 (1167)
+..+.+.+++.+ ..+...++.++.++++.+|..|...+. ..+..+...+.+. .+.++|+-++..+..|...++.
T Consensus 44 ~r~l~krl~~~n--~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~--~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 44 FAAIKKKMNSPN--PHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST--PHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHTCSS--HHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHhcc
Confidence 334445555543 356667888888888888877654331 2344444444432 5688999999999999988765
Q ss_pred ccc-ccHHHHHHHH
Q 001062 288 DIS-SYCDEILHLT 300 (1167)
Q Consensus 288 ~~~-~~l~~ii~~~ 300 (1167)
.-. +++.+....+
T Consensus 120 ~~~~~~i~~~y~~L 133 (220)
T 1dvp_A 120 SDKYQAIKDTMTIL 133 (220)
T ss_dssp CSSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 422 3344444444
No 155
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=50.83 E-value=2.6e+02 Score=29.85 Aligned_cols=109 Identities=11% Similarity=-0.011 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHHH-----HHHHHHHhcCCCcchhcHHHHHHHHHHhhcCCchh
Q 001062 46 KLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVEM-----TDKLCIKLLNGKDQHRDIASIALKTIIAEVTTSSL 120 (1167)
Q Consensus 46 ~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~l-----~~~L~~~~~~~~~~~r~~a~~aL~~~~~~~~~~~~ 120 (1167)
.-+..++..|.+.+.+.++.+...|..+...= .+.+.++ +..|+..+.++.......+..||..++. ...-
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~---~v~G 193 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML---FVDG 193 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT---SHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh---cccc
Confidence 44555666666788888999999888854311 1222332 4566666655544444444555554443 2101
Q ss_pred HHHHH--HHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHh
Q 001062 121 AQSIH--TSLTPQLTKGITLKDMNTEIRCECLDILCDVLHKF 160 (1167)
Q Consensus 121 ~~~~~--~~i~p~Ll~~l~~~~~~~~v~~~~~~~L~~l~~~~ 160 (1167)
+..++ ...+-++...+.+. ...|...|+.+|..++...
T Consensus 194 m~gvvs~~~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 194 MLGVVAHSDTIQWLYTLCASL--SRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp HHHHHHCHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHC
T ss_pred ccchhCCHHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHccC
Confidence 11111 22444455555532 5788889999988887765
No 156
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=47.86 E-value=59 Score=29.63 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=60.2
Q ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhh---hhhhcc
Q 001062 172 LSALLPQLSANQASVRKKSVSCIASLASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVG---YRFGPH 248 (1167)
Q Consensus 172 ~~~ll~~l~~~~~~vrk~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~p~ 248 (1167)
+...+..|++.+..++..+.-|+...- .-..++..+.+.++.... +.|-..+.++..|+..+. ..|.+.
T Consensus 9 l~~~L~~L~~s~~sI~~~s~w~l~~~~------~a~~iv~~i~~~l~~~~~--~~KL~~LYLindIl~ns~~~~~~y~~~ 80 (135)
T 4fu3_A 9 LEKKLSELSNSQQSVQTLSLWLIHHRK------HAGPIVSVWHRELRKAKS--NRKLTFLYLANDVIQNSKRKGPEFTRE 80 (135)
T ss_dssp HHHHHHHCCSSTTHHHHHHHHHHHTGG------GHHHHHHHHHHHHHHSCT--TTHHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344556677777788877777775432 123455556666655443 467788999999987653 233333
Q ss_pred hhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 001062 249 LGDTVPVLIDYCTSASENDEELREYSLQALESFLLR 284 (1167)
Q Consensus 249 l~~lvp~l~~~l~~~~e~~~e~re~al~~l~~l~~~ 284 (1167)
+...+|.++..+-.. .+++.|......+..|-.+
T Consensus 81 f~~~l~~~~~~~~~~--~~~~~k~kl~kll~iW~~r 114 (135)
T 4fu3_A 81 FESVLVDAFSHVARE--ADEGCKKPLERLLNIWQER 114 (135)
T ss_dssp HHTTHHHHHHHHHHH--HHTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhcCC
Confidence 344444444332211 2345677777777777653
No 157
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=44.18 E-value=3.9e+02 Score=30.05 Aligned_cols=257 Identities=9% Similarity=0.068 Sum_probs=123.5
Q ss_pred HHHHhcCC-ChhHHhHhHHHHHHHhcccccC-----CChHHHHHHHHHHHHhcCC-------------CChhHHHHHHHH
Q 001062 9 ILEKITGK-DKDFRYMATSDLLNELNKESFK-----ADADLEVKLSNIVVQQLDD-------------VAGDVSGLAVKC 69 (1167)
Q Consensus 9 ll~~~~~~-d~d~R~mAl~dL~~~l~~~~~~-----~~~~~~~~i~~~ll~~L~d-------------~~~~Vr~~A~~~ 69 (1167)
++..+.++ +.|.++.|.+.|...+..+.+. .+....+.++..+-+.+++ .+...+..++-|
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~ 251 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL 251 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence 44445553 4677888999988777653321 1111222233222233221 123557777777
Q ss_pred HHHhh------hhcChhhHHHHHHHHHHHhc-CCCcchhcHHHHHHHHHHhhcCCc--hhHHH-H-HHHHHHHHHHhhhc
Q 001062 70 LAPLV------KKVSEPRVVEMTDKLCIKLL-NGKDQHRDIASIALKTIIAEVTTS--SLAQS-I-HTSLTPQLTKGITL 138 (1167)
Q Consensus 70 l~~l~------~~~~~~~~~~l~~~L~~~~~-~~~~~~r~~a~~aL~~~~~~~~~~--~~~~~-~-~~~i~p~Ll~~l~~ 138 (1167)
+=.|+ ..+....+ ..+..|...+. ..++.+-.++..+|+++++..+.. ..... + ...+ +.+++.|+.
T Consensus 252 iWlLSF~~~~~~~l~~~~i-~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 252 IWLLTFNPVFANELVQKYL-SDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHTTSHHHHHHHHTTSH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHcCHHHHHHHHhcch-HHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 65443 11211221 22344544443 456677788888899988765432 12221 1 1333 456666655
Q ss_pred cC-CChhHHHHHHHHHHHHHHHhccchh---HHHHHHHHHHhhhhcCChH-----HHHHHHHHHHHHHHhhcCHHHHHHH
Q 001062 139 KD-MNTEIRCECLDILCDVLHKFGNLMS---NDHERLLSALLPQLSANQA-----SVRKKSVSCIASLASSLSDDLLAKA 209 (1167)
Q Consensus 139 ~~-~~~~v~~~~~~~L~~l~~~~g~~l~---~~~~~l~~~ll~~l~~~~~-----~vrk~a~~~l~~l~~~~~~~~~~~l 209 (1167)
.+ .++++.++ ++.|.+.++..-..++ .|..++.. ..|.-+-+ -=|..| .....+. -++
T Consensus 330 rk~~Dedl~ed-l~~L~e~L~~~~~~ltsfDeY~~El~s---G~L~WSP~H~se~FW~ENa-------~kf~e~~--~~l 396 (480)
T 1ho8_A 330 RKYSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDS---KLLCWSPPHVDNGFWSDNI-------DEFKKDN--YKI 396 (480)
T ss_dssp SCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHH---TCCCCCGGGGCHHHHHHHS-------GGGSSGG--GHH
T ss_pred CCCCcHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHhc---CCcccCCCccchhHHHHHH-------HHHHhcc--hHH
Confidence 32 23444433 3444444443333333 34444333 22322100 011111 1111111 123
Q ss_pred HHHHHHHhhcC--------CCChHHHHHHHHHHHHHHHHhhhh--hhcchhhhHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 001062 210 TIEVVRNLRSK--------GAKPEMIRTNIQMVGALSRAVGYR--FGPHLGDTVPVLIDYCTSASENDEELREYSLQALE 279 (1167)
Q Consensus 210 ~~~l~~~l~~~--------~~~~~~r~~~~~~l~~l~~~~~~~--~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~l~ 279 (1167)
+..+++.+.+. ..+....-.|+.=+|.+++..|.. +-.-+ ..=..+++.+++ +|++||..|+.+++
T Consensus 397 lk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l-g~K~~VM~Lm~h---~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 397 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT-GGKADIMELLNH---SDSRVKYEALKATQ 472 (480)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH-SHHHHHHHHTSC---SSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc-CcHHHHHHHhcC---CCHHHHHHHHHHHH
Confidence 44444444321 112234445677778888876642 11111 124445666777 89999999999999
Q ss_pred HHHHh
Q 001062 280 SFLLR 284 (1167)
Q Consensus 280 ~l~~~ 284 (1167)
.++.+
T Consensus 473 klm~~ 477 (480)
T 1ho8_A 473 AIIGY 477 (480)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
No 158
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=43.88 E-value=1.3e+02 Score=28.20 Aligned_cols=77 Identities=12% Similarity=0.126 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchh--hhHHH-HHHHhhhcCCCChhHHHHHHHHHHHHHHhCC
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG--DTVPV-LIDYCTSASENDEELREYSLQALESFLLRCP 286 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~--~lvp~-l~~~l~~~~e~~~e~re~al~~l~~l~~~~~ 286 (1167)
+..+.+.+++.. +..+...++.++.++++.||..|...+. ..+.- +...+........+||+-++..+..|...++
T Consensus 55 ~ral~krl~~~~-n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 55 LRAVKKRIVGNK-NFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp HHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 444555665321 2356677889999999999888765332 24443 3444432111346899999999999988765
Q ss_pred c
Q 001062 287 R 287 (1167)
Q Consensus 287 ~ 287 (1167)
.
T Consensus 134 ~ 134 (157)
T 1elk_A 134 S 134 (157)
T ss_dssp T
T ss_pred C
Confidence 3
No 159
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=40.44 E-value=1.3e+02 Score=28.09 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcc-CChhhHHHHHHHHHHHHHhcCchhHhhhh--hhHHH-HHHhcccCC-CCchHHHHHHHHHHHHhcc
Q 001062 425 SKIVKSINRQLRE-KSIKTKVGAFSVLRELVVVLPDCLADHIG--SLIPG-IEKSLNDKS-STSNLKIEALTFTRLVLSS 499 (1167)
Q Consensus 425 ~~l~~~l~~~L~~-~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~l~~~-l~~~l~d~~-~~~~~~~~al~~l~~l~~~ 499 (1167)
...+..|.+.++. +++.+...++.+|..++..++..|...+. .++.. +.+.+.++. ....++...+.++..-...
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4556677777864 46667777999999999999888754433 34442 455555542 2346899989888887765
Q ss_pred CC
Q 001062 500 HS 501 (1167)
Q Consensus 500 ~~ 501 (1167)
..
T Consensus 132 F~ 133 (152)
T 3rru_A 132 FP 133 (152)
T ss_dssp CS
T ss_pred hC
Confidence 43
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=39.93 E-value=82 Score=28.87 Aligned_cols=78 Identities=9% Similarity=0.051 Sum_probs=57.1
Q ss_pred hHhHHHHHhhccCCChHHHHHHHHHHHHHHhcCchhhhchhhhhhHHHHHhhhccccceeeeeccCceeec------ccC
Q 001062 1004 FPEISSFLMLIKDQDRHVRRAAVLALSTFAHNKPNLIKGLLPELLPLLYDQTIVKKELIRTVDLGPFKHTV------DDG 1077 (1167)
Q Consensus 1004 ~~~i~~~l~~l~d~d~~vr~~a~~~L~~~a~~~p~~~~~~l~~llp~L~~~~~~~~~lir~v~~gp~k~~~------d~g 1077 (1167)
..++.-+++.|++.+..++.=++..|..+.++.+.-+...+..-... ++++. -|++.- |-|
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~-Ik~l~------------~F~g~~dp~~G~d~g 114 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVA-VRNLF------------HYKGHPDPLKGDALN 114 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHH-HHTTT------------TCCCCCCTTTSSCHH
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHH-HHHHH------------hcCCCCCcccccchh
Confidence 44566677899999999999999999999999888776666554432 33332 255443 556
Q ss_pred hhHHHHHHHHHHHHHhh
Q 001062 1078 LELRKAAFECVDTLLDS 1094 (1167)
Q Consensus 1078 le~Rk~a~~~~~~ll~~ 1094 (1167)
..+|..|=|++..|.+.
T Consensus 115 ~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 115 KAVRETAHETISAIFSE 131 (140)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 89999999988877765
No 161
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=39.60 E-value=2.2e+02 Score=28.58 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=48.3
Q ss_pred ccChhHHHHHHHHHHHHHhhccccCCcccchHHHHhcccCC-cchhHHHHHHHHHHHHhhCchHHHHHHHH
Q 001062 1075 DDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLADFLH 1144 (1167)
Q Consensus 1075 d~gle~Rk~a~~~~~~ll~~~~~~~~~~~~~~~~~~~gl~D-~~di~~l~~~~l~~l~~~~p~~~~~~l~~ 1144 (1167)
|+..=.|++|+.++ +.- ..+.|...++ .++...+.| +.-||.-.--+|..+...+|+.|.+.|++
T Consensus 142 s~~~w~rR~ai~~~---l~~-~~~~d~~~~~-~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~~ 207 (232)
T 3jxy_A 142 SDNIWLQRAAILFQ---LKY-KQKMDEELLF-WIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQN 207 (232)
T ss_dssp SSCHHHHHHHHHTT---TTC-GGGCCHHHHH-HHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH---HHH-HhCCCHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 55667888888753 211 2234444555 667777888 88899999999999999999999988874
No 162
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.98 E-value=1.4e+02 Score=29.87 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh--hhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccC
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSH 500 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~ 500 (1167)
...++.|.+.++.+++.+...++.+|..++...+..|...+ ..++..+.+.+.. ..+..++..++.++.......
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR-QVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Confidence 45667788888889999999999999999998887663321 2333344444432 235678888888877766543
No 163
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=38.85 E-value=35 Score=27.22 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=31.8
Q ss_pred hhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhh
Q 001062 74 VKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE 114 (1167)
Q Consensus 74 ~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~ 114 (1167)
..++++++++.++..++..+.+-+.. .|.+.++|++++.+
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEKH~Ap-~DLSLMvLGN~vTn 43 (80)
T 2juz_A 4 HSKYSDAQLSAIVNDMIAVLEKHKAP-VDLSLIALGNMASN 43 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHH
Confidence 46788899999999999988754333 68999999998755
No 164
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=38.83 E-value=1.7e+02 Score=27.44 Aligned_cols=74 Identities=9% Similarity=0.173 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhc-cCChhhHHHHHHHHHHHHHhcCchhHhhhh--hhHHH-HHHhcccCC-CCchHHHHHHHHHHHHhc
Q 001062 425 SKIVKSINRQLR-EKSIKTKVGAFSVLRELVVVLPDCLADHIG--SLIPG-IEKSLNDKS-STSNLKIEALTFTRLVLS 498 (1167)
Q Consensus 425 ~~l~~~l~~~L~-~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~--~l~~~-l~~~l~d~~-~~~~~~~~al~~l~~l~~ 498 (1167)
...++.+.+.++ .+++.+...++.+|..++..++..|...+. .++.. +.+.+..+. ....++..++.++..-..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 456677888887 477888889999999999999888755433 34554 555554432 234678787777766544
No 165
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.71 E-value=1.1e+02 Score=30.72 Aligned_cols=74 Identities=9% Similarity=0.114 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh--hhhHHHHHHhcccCCCCchHHHHHHHHHHHHhcc
Q 001062 425 SKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI--GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS 499 (1167)
Q Consensus 425 ~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~ 499 (1167)
...++.|.+.|+.+++.+..-++.+|..++...+..|...+ ..++..+.+.+.+. .+..++..++.++..-...
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST-PHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHH
Confidence 35667778888888999999999999999998877663322 12444444444443 2457888877777766544
No 166
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=37.45 E-value=42 Score=26.79 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=32.1
Q ss_pred hhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhh
Q 001062 74 VKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE 114 (1167)
Q Consensus 74 ~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~ 114 (1167)
..++++++++.++..++..+.+-+.. .|.+.++|++++.+
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEKH~Ap-~DLSLMvLGN~vTn 43 (80)
T 2juw_A 4 QSKYSNTQVESLIAEILVVLEKHKAP-TDLSLMALGNCVTH 43 (80)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHH
Confidence 46788899999999999988755444 78999999987754
No 167
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=34.27 E-value=60 Score=29.80 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=46.8
Q ss_pred HHHHHhcCCChhHHhHhHHHHHHHhcccccCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhhhhcChhhHHH
Q 001062 8 AILEKITGKDKDFRYMATSDLLNELNKESFKADADLEVKLSNIVVQQLDDVAGDVSGLAVKCLAPLVKKVSEPRVVE 84 (1167)
Q Consensus 8 ~ll~~~~~~d~d~R~mAl~dL~~~l~~~~~~~~~~~~~~i~~~ll~~L~d~~~~Vr~~A~~~l~~l~~~~~~~~~~~ 84 (1167)
.++.+..+-|+. -+-.-|+++|....+.-.......|++.|++-|+++++.|.--|.++|..|+.+-.+.....
T Consensus 14 ~~V~~ATs~d~~---~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~ 87 (140)
T 1vdy_A 14 RMIDAVTSDEDK---VAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRRE 87 (140)
T ss_dssp HHHHHTTCSCSS---CCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred HHHHHHhcCCCC---CCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHH
Confidence 445555444431 12233344444333322334568999999999999999999999999988887666554433
No 168
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=34.13 E-value=38 Score=27.21 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=32.5
Q ss_pred hhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhh
Q 001062 73 LVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE 114 (1167)
Q Consensus 73 l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~ 114 (1167)
...++++++++.++..|+..+.+-+.. .|.+.++|++++.+
T Consensus 3 i~SKYsd~qvE~ll~eli~VLEKH~Ap-~DLSLMvLGNmvTN 43 (83)
T 2jpq_A 3 ITSKYTDEQVEKILAEVALVLEKHAAS-PELTLMIAGNIATN 43 (83)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHH
Confidence 346788899999999999988755444 78999999987754
No 169
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=32.18 E-value=3.2e+02 Score=29.94 Aligned_cols=58 Identities=9% Similarity=0.102 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHhhCCCCCCccCCCCCchHHHHHHH--HHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhc
Q 001062 384 ENVKMDVFNTFIELVRQTGNVTKGQIDNNELNPRWLLKQE--VSKIVKSINRQLREKSIKTKVGAFSVLRELVVVL 457 (1167)
Q Consensus 384 ~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~p~~~l~~~--~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~ 457 (1167)
......++.|+.++++... .+... -|..+..+...+.++.+++|..++.+|..++...
T Consensus 134 ~~~q~~~l~CLkalmN~~~----------------G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~ 193 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKF----------------GIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 193 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHH----------------HHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhcchh----------------hHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCc
Confidence 4566788889988876542 11111 1556777888888888999999999999988765
No 170
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=30.00 E-value=1.4e+02 Score=27.08 Aligned_cols=81 Identities=10% Similarity=0.088 Sum_probs=0.0
Q ss_pred HhhcCHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchhhhHHHHHHHhhhcCCCChhHHHHHHHH
Q 001062 198 ASSLSDDLLAKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLGDTVPVLIDYCTSASENDEELREYSLQA 277 (1167)
Q Consensus 198 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~~lvp~l~~~l~~~~e~~~e~re~al~~ 277 (1167)
....+.+.+..+++.++.-+++.||. ++..+-..+.+|-..++|.+.+.+.. +|+.= .++.
T Consensus 21 L~~~~~~~i~p~lp~LL~WLQD~NWP-------------vA~~i~~~L~~~~~~l~p~I~~vl~s---~D~~W---~ywi 81 (134)
T 3ut4_A 21 LCKLIDNEIEPIIFDLLKWLQDYNWP-------------IAKDILPVVVLHQSIAMPHILTILQG---NDIMW---KYWV 81 (134)
T ss_dssp HTTCCHHHHHHHHHHHHGGGSCTTST-------------THHHHHHHHHHTHHHHHHHHHHHHHS---SCHHH---HHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCCc-------------cHHHHHHHHHHccHhhHHHHHHHHHc---CChHH---HHHH
Q ss_pred HHHHHHhCCcc----ccccHHHHH
Q 001062 278 LESFLLRCPRD----ISSYCDEIL 297 (1167)
Q Consensus 278 l~~l~~~~~~~----~~~~l~~ii 297 (1167)
+..++...|.+ +++.+..+.
T Consensus 82 l~~lv~~~~~~~~~~l~~eL~rl~ 105 (134)
T 3ut4_A 82 IKLMIPYLIYPNKQLVKSELERLS 105 (134)
T ss_dssp HHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
No 171
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=29.46 E-value=1.9e+02 Score=26.06 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=56.6
Q ss_pred chHHHHHHhcCCChhhHHHHHHHHHHhhhhcCcccchHHHHHHhhc-ccchhHHHHHHHHHHHhhccccchhhhhHHHHH
Q 001062 852 HIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDN-QQKKQYLLLHSLKEVIVRQSVDKAEFQDSSVEK 930 (1167)
Q Consensus 852 ~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~-~~~~~~~~l~aLkei~~~~~~~~~~~l~~~~~~ 930 (1167)
.-+...+..+++..+.+.+.+..|+-.. .+.+.++..+.+.+.. .+.+|..+|--+-.++.+++..+...+.+.+..
T Consensus 8 ~~l~~~L~~L~~s~~sI~~~s~w~l~h~--~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~ 85 (132)
T 4flb_A 8 SSLDRKFQSVTNTMESIQGLSSWCIENK--KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFAD 85 (132)
T ss_dssp HHHHHHHHHCCSSHHHHHHHHHHHHHTG--GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHT
T ss_pred HHHHHHHHHCcccHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 3456666777777788888888888753 2334455666666665 345566666667777777655422233333444
Q ss_pred HHHHHHhhccCCccchhhHHHHHh
Q 001062 931 ILNLLFNHCESEEEGVRNVVAECL 954 (1167)
Q Consensus 931 i~~~L~~~~~~~~e~vr~~aa~~L 954 (1167)
.+...+.... +++.|.-...++
T Consensus 86 ~l~~~~~~~~--~~~~~~kl~~ll 107 (132)
T 4flb_A 86 VLPEAAALVK--DPSVSKSVERIF 107 (132)
T ss_dssp THHHHHHTTC--STTTHHHHHHHH
T ss_pred HHHHHHHHhC--CHHHHHHHHHHH
Confidence 4444454432 244554444433
No 172
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=28.84 E-value=30 Score=27.77 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=31.9
Q ss_pred hhhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhh
Q 001062 73 LVKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE 114 (1167)
Q Consensus 73 l~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~ 114 (1167)
...++++++++.++..|+..+.+-+.. .|.+.++|++++.+
T Consensus 3 i~SKYsd~qvE~ll~eli~VLEKH~Ap-~DLSLMvLGNmvTN 43 (83)
T 2jrx_A 3 QISRYSDEQVEQLLAELLNVLEKHKAP-TDLSLMVLGNMVTN 43 (83)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHH
Confidence 346788899999999999988754333 68999999987654
No 173
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=28.65 E-value=3.1e+02 Score=25.11 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHhcCc
Q 001062 422 QEVSKIVKSINRQLREKSIKTKVGAFSVLRELVVVLPD 459 (1167)
Q Consensus 422 ~~~~~l~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~ 459 (1167)
++.+.|++.+.+.+....++.|..++.++.+++.....
T Consensus 38 ~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~ 75 (145)
T 3d9j_A 38 KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRH 75 (145)
T ss_dssp GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhh
Confidence 35578888888888887888999999999999886644
No 174
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=27.38 E-value=54 Score=25.86 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=31.2
Q ss_pred hhhcChhhHHHHHHHHHHHhcCCCcchhcHHHHHHHHHHhh
Q 001062 74 VKKVSEPRVVEMTDKLCIKLLNGKDQHRDIASIALKTIIAE 114 (1167)
Q Consensus 74 ~~~~~~~~~~~l~~~L~~~~~~~~~~~r~~a~~aL~~~~~~ 114 (1167)
..++++++++.++..++..+.+-+.. .|.+.++|++++.+
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEKH~Ap-~DLSLMvLGN~vTn 43 (76)
T 2jr2_A 4 VSKYSNERVEKIIQDLLDVLVKEEVT-PDLALMCLGNAVTN 43 (76)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHH
Confidence 46788899999999999988754333 68899999987654
No 175
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=26.35 E-value=2.1e+02 Score=26.56 Aligned_cols=78 Identities=9% Similarity=0.153 Sum_probs=46.3
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhhhhcchh--hhHH-HHHHHhhhcCCCChhHHHHHHHHHHHHHHhCC
Q 001062 210 TIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYRFGPHLG--DTVP-VLIDYCTSASENDEELREYSLQALESFLLRCP 286 (1167)
Q Consensus 210 ~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~~~p~l~--~lvp-~l~~~l~~~~e~~~e~re~al~~l~~l~~~~~ 286 (1167)
+..+.+.++... +......++.++.++++.||..|...+. ..+. .+...+........+||+-++..+..|...++
T Consensus 55 ~ral~KRl~~~~-n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 55 VKALKKRISKNY-NHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHHHHHHTTCC-BHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHcCCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 444555565321 2234456888999999999987754332 2222 12222322111345799999999999998776
Q ss_pred cc
Q 001062 287 RD 288 (1167)
Q Consensus 287 ~~ 288 (1167)
..
T Consensus 134 ~~ 135 (152)
T 3rru_A 134 GG 135 (152)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 176
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=25.70 E-value=6e+02 Score=26.63 Aligned_cols=151 Identities=11% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHhcCchhHhhh------hhhHHHHHHhcccCCCCchHHHHHHHHHHHHhcc-C
Q 001062 428 VKSINRQLREKSIKTKVGAFSVLRELVVVLPDCLADHI------GSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSS-H 500 (1167)
Q Consensus 428 ~~~l~~~L~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l------~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~-~ 500 (1167)
+..+.+.+ .=....+--++.++.-++. ......++ ..++..+...+.++. ....+.-++.+++.++.+ .
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l--~p~~~~~~~~~~~~~~l~~~l~~~~~~~~-~p~n~ml~lR~l~NlF~~~~ 180 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIK--HPSVNENFCNEKEGAQFSSHLINLLNPKG-KPANQLLALRTFCNCFVGQA 180 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTT--SHHHHHHHHSTTTHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHGGGSHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHc--CccHHHHhhccccchHHHHHHHHhcCCCC-ChHHHHHHHHHHHHccCCch
Q ss_pred CCCchhhhhHhhHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHH
Q 001062 501 SPPVFHPYIKALSSPVLAAVGERYYKVTAEALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKEC 580 (1167)
Q Consensus 501 ~~~~~~~~l~~ll~~l~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~ 580 (1167)
+...+..+.+.++..+...+.+.+..++..+..++-++.-.... ..+. +-...++..+.+.++ ...|.|..-+
T Consensus 181 g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~-----~~~~-~~~~~ll~~l~~il~-~~~d~EalyR 253 (304)
T 3ebb_A 181 GQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHK-----DHNI-EGKAQCLSLISTILE-VVQDLEATFR 253 (304)
T ss_dssp HHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHH-----SCCH-HHHHHHHHHHHHHHT-TCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhh-----cCCc-hHHHHHHHHHHHHHh-ccCCHHHHHH
Q ss_pred HHHHHHHHH
Q 001062 581 AISCMGLVI 589 (1167)
Q Consensus 581 Ai~alg~l~ 589 (1167)
++.|+|.++
T Consensus 254 ~LvALGtL~ 262 (304)
T 3ebb_A 254 LLVALGTLI 262 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 177
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=23.22 E-value=3.1e+02 Score=33.26 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHhcCchhHhhhhhhHHHHHHhcccCCCCchHHHHHHHHHHHHhccCCCCchhhhhHhhHHHHHHHhcCCchHHHH
Q 001062 450 LRELVVVLPDCLADHIGSLIPGIEKSLNDKSSTSNLKIEALTFTRLVLSSHSPPVFHPYIKALSSPVLAAVGERYYKVTA 529 (1167)
Q Consensus 450 l~~l~~~~~~~l~~~l~~l~~~l~~~l~d~~~~~~~~~~al~~l~~l~~~~~~~~~~~~l~~ll~~l~~~l~d~~~~v~~ 529 (1167)
+..|+..+...+..+-..++..++++.. ....+...++++-.++.+-.++--...+..++..+..++....++.+.
T Consensus 31 l~~L~~~l~~~l~~~r~~i~~~l~~~~~----~~P~Kt~vyAaLVgllN~k~pe~G~~lv~~l~~~f~~~l~~~~~~~~k 106 (771)
T 1h2v_C 31 LEGLAGVLEADLPNYKSKILRLLCTVAR----LLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAV 106 (771)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH----hCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHccChHHHH
Q ss_pred HHHHHHHHHHHhccCCccccCCCCccchHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhcCcccccchhhhHHHHHH
Q 001062 530 EALRVCGELVRVLRPSVEGLGFDFKPYVQPIYNAIMSRLTNQDQDQEVKECAISCMGLVISTFGDNLGAELPACLPVLVD 609 (1167)
Q Consensus 530 ~al~~l~~l~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~d~~~~vr~~Ai~alg~l~~~~g~~l~~~~~~~l~~L~~ 609 (1167)
..+..++.|+.. .-.-...+-+++..+++.....+..+.-+...++++-..+...|..+....+..+..+++
T Consensus 107 ~~lrFLa~L~n~--------~Vv~~~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~~~~~l~~lle 178 (771)
T 1h2v_C 107 YLVRFLSDLVNC--------HVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFA 178 (771)
T ss_dssp HHHHHHHHHHHT--------TSBCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccC--------CeecHHHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q ss_pred hhc
Q 001062 610 RMG 612 (1167)
Q Consensus 610 ~L~ 612 (1167)
++.
T Consensus 179 ~~~ 181 (771)
T 1h2v_C 179 NTE 181 (771)
T ss_dssp HHH
T ss_pred HHH
No 178
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=20.65 E-value=3.2e+02 Score=24.46 Aligned_cols=66 Identities=6% Similarity=0.137 Sum_probs=43.7
Q ss_pred cchHHHHHHhcCCChhhHHHHHHHHHHhhhhcCcccchHHHHHHhhc-ccchhHHHHHHHHHHHhhccc
Q 001062 851 EHIENVIIESFQSPFEEIKSAASYALGNIAVGNLSKFLPFILDQIDN-QQKKQYLLLHSLKEVIVRQSV 918 (1167)
Q Consensus 851 ~~~~~~l~~~l~~~~e~vr~aaa~aLG~l~~~~~~~~lp~l~~~l~~-~~~~~~~~l~aLkei~~~~~~ 918 (1167)
++.+...+..|++..+.+.+++..|+-.. .+.+.+...+.+.+.. .+.++..+|--+-.++.++..
T Consensus 6 ~~~l~~~L~~L~~s~~sI~~~s~w~l~~~--~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~ 72 (135)
T 4fu3_A 6 ESALEKKLSELSNSQQSVQTLSLWLIHHR--KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKR 72 (135)
T ss_dssp HHHHHHHHHHCCSSTTHHHHHHHHHHHTG--GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHh
Confidence 45566677777777788998888888753 2334455666666665 445666666667777776644
No 179
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=20.45 E-value=5.2e+02 Score=24.04 Aligned_cols=86 Identities=10% Similarity=0.128 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHhhhh--------------hhc---chhhhHHHHHHH-hhhcCCCCh
Q 001062 207 AKATIEVVRNLRSKGAKPEMIRTNIQMVGALSRAVGYR--------------FGP---HLGDTVPVLIDY-CTSASENDE 268 (1167)
Q Consensus 207 ~~l~~~l~~~l~~~~~~~~~r~~~~~~l~~l~~~~~~~--------------~~p---~l~~lvp~l~~~-l~~~~e~~~ 268 (1167)
..+++.+...++.... +.+-.++..+-+|+|..-+. |.+ .+..++|.+++. ++. .++
T Consensus 40 ~~iv~~l~~~ikk~p~--~hKL~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e~i~~l~~~~~~~---~~~ 114 (157)
T 3clj_A 40 SKIISLIIDYSRLCPD--SHKLGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGEVIQELLSDAIAK---SNQ 114 (157)
T ss_dssp HHHHHHHHHHHHHSCG--GGHHHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHHHHHHHHHHHHHHH---SCH
T ss_pred HHHHHHHHHHHHhCCC--cceeeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHHHHHHHHHHHHHc---CCH
Confidence 4466666666666543 67889999999999974332 221 235566666554 344 456
Q ss_pred hHHHHHHHHHHHHHHh--CCcc-ccccHHHHH
Q 001062 269 ELREYSLQALESFLLR--CPRD-ISSYCDEIL 297 (1167)
Q Consensus 269 e~re~al~~l~~l~~~--~~~~-~~~~l~~ii 297 (1167)
+.|+-.-..+..|-.. +|.+ +.++-..+.
T Consensus 115 ~~k~Ki~klldiW~k~~~Fp~e~i~~i~~~~~ 146 (157)
T 3clj_A 115 DHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCF 146 (157)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSCCTTTTSHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHHHhh
Confidence 6777777777777665 4544 334444333
Done!