Query 001063
Match_columns 1167
No_of_seqs 438 out of 2583
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 100.0 2E-214 6E-219 2042.1 83.8 822 116-940 7-862 (1080)
2 1kk8_A Myosin heavy chain, str 100.0 3E-207 1E-211 1919.3 76.7 790 92-914 5-825 (837)
3 1i84_S Smooth muscle myosin he 100.0 3E-203 9E-208 1978.2 81.4 777 113-914 27-838 (1184)
4 1w7j_A Myosin VA; motor protei 100.0 4E-203 1E-207 1873.9 66.4 752 117-870 8-793 (795)
5 4db1_A Myosin-7; S1DC, cardiac 100.0 2E-202 5E-207 1860.0 64.7 754 85-846 2-782 (783)
6 4anj_A Unconventional myosin-V 100.0 2E-202 7E-207 1904.9 67.1 798 118-925 3-854 (1052)
7 2ycu_A Non muscle myosin 2C, a 100.0 3E-198 9E-203 1879.4 74.5 789 113-906 4-824 (995)
8 1g8x_A Myosin II heavy chain f 100.0 3E-197 1E-201 1866.4 81.7 786 87-907 3-808 (1010)
9 1w9i_A Myosin II heavy chain; 100.0 2E-198 6E-203 1818.1 63.1 741 89-849 5-766 (770)
10 2v26_A Myosin VI; calmodulin-b 100.0 3E-197 9E-202 1821.8 64.9 730 121-859 2-784 (784)
11 1lkx_A Myosin IE heavy chain; 100.0 2E-191 6E-196 1748.0 58.3 662 169-845 7-696 (697)
12 2dfs_A Myosin-5A; myosin-V, in 99.7 5.6E-16 1.9E-20 200.4 19.6 188 845-1033 816-1043(1080)
13 2ix7_C Myosin-5A; contractIle 98.7 1.5E-08 5E-13 86.0 7.3 49 894-942 5-53 (58)
14 1n2d_C IQ2 and IQ3 motifs from 98.7 1.6E-08 5.3E-13 82.4 6.4 46 867-913 2-47 (48)
15 2ix7_C Myosin-5A; contractIle 98.7 6.6E-09 2.3E-13 88.2 3.9 46 846-891 6-51 (58)
16 1n2d_C IQ2 and IQ3 motifs from 98.5 2.4E-07 8.1E-12 75.4 6.3 43 894-936 3-47 (48)
17 1i84_S Smooth muscle myosin he 98.4 7.7E-07 2.6E-11 117.6 14.5 106 893-998 791-902 (1184)
18 2bl0_A Major plasmodial myosin 97.9 2.3E-05 7.8E-10 67.4 7.5 46 867-912 3-48 (63)
19 1wdc_A Scallop myosin; calcium 97.9 2.7E-05 9.4E-10 67.2 7.2 47 866-912 4-50 (64)
20 1kk8_A Myosin heavy chain, str 96.8 0.0016 5.3E-08 82.5 7.9 50 893-942 778-830 (837)
21 1wdc_A Scallop myosin; calcium 96.6 0.0025 8.5E-08 54.8 5.5 47 895-941 7-56 (64)
22 2bl0_A Major plasmodial myosin 96.5 0.0021 7.1E-08 55.1 4.4 46 895-940 5-53 (63)
23 3gn4_A Myosin-VI; unconvention 96.5 0.0081 2.8E-07 59.6 9.0 55 853-916 13-67 (148)
24 1jbk_A CLPB protein; beta barr 95.1 0.01 3.5E-07 60.0 3.2 33 248-280 37-69 (195)
25 2p65_A Hypothetical protein PF 94.6 0.036 1.2E-06 55.8 6.0 64 216-280 5-69 (187)
26 3gn4_A Myosin-VI; unconvention 94.6 0.45 1.5E-05 47.3 13.4 54 876-938 13-66 (148)
27 4eun_A Thermoresistant glucoki 93.9 0.029 9.9E-07 58.5 3.5 33 246-278 21-53 (200)
28 3uie_A Adenylyl-sulfate kinase 93.7 0.049 1.7E-06 56.7 4.9 31 249-279 20-50 (200)
29 1ex7_A Guanylate kinase; subst 93.5 0.033 1.1E-06 58.1 3.0 22 257-278 4-25 (186)
30 3c8u_A Fructokinase; YP_612366 93.4 0.035 1.2E-06 58.3 3.1 30 251-280 19-48 (208)
31 1kgd_A CASK, peripheral plasma 92.9 0.044 1.5E-06 56.2 2.8 25 254-278 5-29 (180)
32 3ec2_A DNA replication protein 92.6 0.068 2.3E-06 54.5 3.7 29 252-280 36-64 (180)
33 3a00_A Guanylate kinase, GMP k 92.5 0.043 1.5E-06 56.5 2.2 25 255-279 2-26 (186)
34 1lvg_A Guanylate kinase, GMP k 92.5 0.053 1.8E-06 56.6 2.9 26 254-279 4-29 (198)
35 3bos_A Putative DNA replicatio 92.5 0.11 3.9E-06 54.5 5.5 38 244-281 42-79 (242)
36 1zp6_A Hypothetical protein AT 92.4 0.06 2.1E-06 55.1 3.1 29 248-276 3-31 (191)
37 2w58_A DNAI, primosome compone 92.4 0.095 3.3E-06 54.3 4.6 26 255-280 55-80 (202)
38 1qhx_A CPT, protein (chloramph 92.3 0.057 2E-06 54.6 2.8 25 254-278 3-27 (178)
39 2eyu_A Twitching motility prot 92.2 0.12 4.1E-06 56.6 5.4 37 244-281 16-52 (261)
40 3asz_A Uridine kinase; cytidin 91.8 0.089 3.1E-06 54.9 3.6 29 251-279 3-31 (211)
41 3tr0_A Guanylate kinase, GMP k 91.8 0.077 2.6E-06 54.9 3.0 26 253-278 6-31 (205)
42 3tau_A Guanylate kinase, GMP k 91.7 0.066 2.3E-06 56.3 2.5 27 252-278 6-32 (208)
43 1zuh_A Shikimate kinase; alpha 91.7 0.093 3.2E-06 52.7 3.5 27 253-279 6-32 (168)
44 3kb2_A SPBC2 prophage-derived 91.7 0.091 3.1E-06 52.5 3.4 24 256-279 3-26 (173)
45 3t61_A Gluconokinase; PSI-biol 91.6 0.089 3.1E-06 54.6 3.3 24 255-278 19-42 (202)
46 2qor_A Guanylate kinase; phosp 91.5 0.071 2.4E-06 55.7 2.4 27 252-278 10-36 (204)
47 3vaa_A Shikimate kinase, SK; s 91.3 0.11 3.6E-06 54.1 3.5 26 253-278 24-49 (199)
48 1knq_A Gluconate kinase; ALFA/ 91.3 0.13 4.3E-06 52.0 4.0 26 253-278 7-32 (175)
49 1kht_A Adenylate kinase; phosp 91.2 0.11 3.7E-06 52.9 3.3 26 254-279 3-28 (192)
50 1m7g_A Adenylylsulfate kinase; 91.1 0.17 5.8E-06 53.1 4.9 31 249-279 20-50 (211)
51 1znw_A Guanylate kinase, GMP k 91.0 0.097 3.3E-06 54.8 2.9 27 252-278 18-44 (207)
52 1rz3_A Hypothetical protein rb 91.0 0.15 5.1E-06 53.1 4.3 32 252-283 20-51 (201)
53 2j41_A Guanylate kinase; GMP, 91.0 0.085 2.9E-06 54.6 2.4 26 253-278 5-30 (207)
54 1np6_A Molybdopterin-guanine d 91.0 0.13 4.5E-06 52.9 3.7 28 255-282 7-34 (174)
55 2kjq_A DNAA-related protein; s 90.8 0.14 4.7E-06 51.2 3.6 28 253-280 35-62 (149)
56 1s96_A Guanylate kinase, GMP k 90.8 0.1 3.5E-06 55.7 2.8 28 252-279 14-41 (219)
57 2pez_A Bifunctional 3'-phospho 90.7 0.15 5.1E-06 51.8 3.9 28 253-280 4-31 (179)
58 3iij_A Coilin-interacting nucl 90.7 0.12 4.1E-06 52.5 3.2 26 253-278 10-35 (180)
59 2l53_B CAM, voltage-gated sodi 90.7 0.21 7E-06 36.5 3.4 22 893-914 5-26 (31)
60 2bbw_A Adenylate kinase 4, AK4 90.6 0.13 4.6E-06 55.2 3.5 26 253-278 26-51 (246)
61 1p9r_A General secretion pathw 90.5 0.2 6.8E-06 58.7 5.1 36 244-280 158-193 (418)
62 1ye8_A Protein THEP1, hypothet 90.4 0.14 4.8E-06 52.7 3.3 23 256-278 2-24 (178)
63 2rhm_A Putative kinase; P-loop 90.4 0.15 5.2E-06 52.0 3.7 26 253-278 4-29 (193)
64 1odf_A YGR205W, hypothetical 3 90.4 0.16 5.5E-06 56.5 4.1 30 251-280 28-57 (290)
65 2kxw_B Sodium channel protein 90.4 0.16 5.4E-06 35.9 2.5 20 893-912 5-24 (27)
66 3ney_A 55 kDa erythrocyte memb 90.4 0.14 4.8E-06 53.8 3.4 27 253-279 18-44 (197)
67 1htw_A HI0065; nucleotide-bind 90.4 0.16 5.3E-06 51.4 3.6 27 252-278 31-57 (158)
68 2chg_A Replication factor C sm 90.3 0.22 7.6E-06 51.2 4.8 37 244-280 28-64 (226)
69 1nks_A Adenylate kinase; therm 90.3 0.13 4.4E-06 52.3 2.9 25 256-280 3-27 (194)
70 3jvv_A Twitching mobility prot 90.3 0.26 8.8E-06 56.5 5.7 38 244-282 114-151 (356)
71 2f1r_A Molybdopterin-guanine d 90.2 0.076 2.6E-06 54.5 1.1 27 255-281 3-29 (171)
72 1xjc_A MOBB protein homolog; s 90.2 0.18 6E-06 51.8 3.8 28 255-282 5-32 (169)
73 1z6g_A Guanylate kinase; struc 90.2 0.11 3.7E-06 55.2 2.3 26 253-278 22-47 (218)
74 3tqf_A HPR(Ser) kinase; transf 89.9 0.15 5.3E-06 52.4 3.1 23 254-276 16-38 (181)
75 1gvn_B Zeta; postsegregational 89.9 0.28 9.7E-06 54.4 5.5 27 252-278 31-57 (287)
76 3e70_C DPA, signal recognition 89.8 0.23 8E-06 56.3 4.8 34 250-283 125-158 (328)
77 1kag_A SKI, shikimate kinase I 89.8 0.14 4.9E-06 51.3 2.8 24 255-278 5-28 (173)
78 1njg_A DNA polymerase III subu 89.8 0.32 1.1E-05 50.5 5.6 30 251-280 42-71 (250)
79 2z0h_A DTMP kinase, thymidylat 89.7 0.2 6.7E-06 51.4 3.8 26 257-282 3-28 (197)
80 2bdt_A BH3686; alpha-beta prot 89.7 0.19 6.3E-06 51.5 3.6 22 255-276 3-24 (189)
81 3lw7_A Adenylate kinase relate 89.7 0.14 4.8E-06 50.9 2.6 19 256-274 3-21 (179)
82 3trf_A Shikimate kinase, SK; a 89.7 0.19 6.4E-06 51.1 3.6 25 254-278 5-29 (185)
83 1l8q_A Chromosomal replication 89.6 0.24 8.3E-06 55.4 4.8 45 235-281 18-64 (324)
84 1sq5_A Pantothenate kinase; P- 89.5 0.29 1E-05 54.7 5.2 28 252-279 78-105 (308)
85 3cm0_A Adenylate kinase; ATP-b 89.4 0.23 7.8E-06 50.5 4.0 26 253-278 3-28 (186)
86 1gtv_A TMK, thymidylate kinase 89.4 0.089 3E-06 54.8 0.9 25 256-280 2-26 (214)
87 3aez_A Pantothenate kinase; tr 89.3 0.22 7.5E-06 56.0 4.0 30 251-280 87-116 (312)
88 2jaq_A Deoxyguanosine kinase; 89.2 0.19 6.6E-06 51.6 3.3 24 256-279 2-25 (205)
89 1e6c_A Shikimate kinase; phosp 89.2 0.2 6.8E-06 50.2 3.4 23 256-278 4-26 (173)
90 2yvu_A Probable adenylyl-sulfa 89.2 0.29 9.8E-06 50.0 4.6 30 253-282 12-41 (186)
91 2ewv_A Twitching motility prot 89.1 0.22 7.4E-06 57.5 4.0 31 251-281 133-163 (372)
92 2pt5_A Shikimate kinase, SK; a 89.1 0.21 7E-06 49.9 3.3 23 256-278 2-24 (168)
93 4gp7_A Metallophosphoesterase; 89.1 0.24 8.1E-06 50.3 3.8 21 253-273 8-28 (171)
94 1cke_A CK, MSSA, protein (cyti 89.1 0.2 6.9E-06 52.6 3.4 25 254-278 5-29 (227)
95 3cr8_A Sulfate adenylyltranfer 89.0 0.34 1.2E-05 58.7 5.7 31 252-282 367-397 (552)
96 1d2n_A N-ethylmaleimide-sensit 89.0 0.41 1.4E-05 52.1 5.9 28 251-278 61-88 (272)
97 3b9q_A Chloroplast SRP recepto 88.8 0.3 1E-05 54.6 4.7 31 253-283 99-129 (302)
98 2iyv_A Shikimate kinase, SK; t 88.6 0.23 8E-06 50.5 3.4 23 256-278 4-26 (184)
99 3lnc_A Guanylate kinase, GMP k 88.5 0.17 5.9E-06 53.7 2.4 26 253-278 26-52 (231)
100 1rj9_A FTSY, signal recognitio 88.4 0.27 9.4E-06 55.1 4.0 31 253-283 101-131 (304)
101 2vp4_A Deoxynucleoside kinase; 88.4 0.15 5E-06 54.5 1.7 26 252-277 18-43 (230)
102 1qf9_A UMP/CMP kinase, protein 88.4 0.22 7.5E-06 50.6 3.0 25 254-278 6-30 (194)
103 1via_A Shikimate kinase; struc 88.3 0.25 8.5E-06 50.0 3.3 23 256-278 6-28 (175)
104 3fb4_A Adenylate kinase; psych 88.3 0.24 8.4E-06 51.7 3.4 22 257-278 3-24 (216)
105 2jeo_A Uridine-cytidine kinase 88.2 0.3 1E-05 52.5 4.0 27 252-278 23-49 (245)
106 1ly1_A Polynucleotide kinase; 88.2 0.27 9.1E-06 49.4 3.5 22 255-276 3-24 (181)
107 1fnn_A CDC6P, cell division co 88.1 0.43 1.5E-05 54.1 5.6 37 243-279 31-69 (389)
108 1svm_A Large T antigen; AAA+ f 88.1 0.46 1.6E-05 54.9 5.7 45 234-278 148-193 (377)
109 2pbr_A DTMP kinase, thymidylat 88.0 0.27 9.1E-06 50.1 3.3 26 256-281 2-27 (195)
110 2qby_B CDC6 homolog 3, cell di 87.9 0.41 1.4E-05 54.3 5.2 40 242-281 33-72 (384)
111 2plr_A DTMP kinase, probable t 87.9 0.27 9.2E-06 50.8 3.3 26 254-279 4-29 (213)
112 3tlx_A Adenylate kinase 2; str 87.8 0.6 2.1E-05 50.2 6.2 27 252-278 27-53 (243)
113 3te6_A Regulatory protein SIR3 87.8 0.36 1.2E-05 54.5 4.5 39 244-282 35-73 (318)
114 3n70_A Transport activator; si 87.8 0.21 7.3E-06 49.1 2.3 25 252-276 22-46 (145)
115 2bwj_A Adenylate kinase 5; pho 87.7 0.25 8.6E-06 50.6 3.0 26 254-279 12-37 (199)
116 2c95_A Adenylate kinase 1; tra 87.6 0.26 8.9E-06 50.4 3.0 25 254-278 9-33 (196)
117 1iqp_A RFCS; clamp loader, ext 87.6 0.34 1.2E-05 53.6 4.2 35 245-279 37-71 (327)
118 3ake_A Cytidylate kinase; CMP 87.6 0.29 9.9E-06 50.5 3.4 23 256-278 4-26 (208)
119 4e22_A Cytidylate kinase; P-lo 87.5 0.26 9E-06 53.3 3.1 26 253-278 26-51 (252)
120 1ofh_A ATP-dependent HSL prote 87.5 0.4 1.4E-05 52.7 4.6 27 252-278 48-74 (310)
121 2wwf_A Thymidilate kinase, put 87.5 0.26 9E-06 51.1 3.0 27 254-280 10-36 (212)
122 2w0m_A SSO2452; RECA, SSPF, un 87.4 0.37 1.3E-05 50.4 4.1 31 253-283 22-52 (235)
123 2og2_A Putative signal recogni 87.3 0.41 1.4E-05 54.9 4.7 48 236-283 128-186 (359)
124 2v9p_A Replication protein E1; 87.3 0.31 1.1E-05 54.7 3.6 35 244-278 115-150 (305)
125 1tev_A UMP-CMP kinase; ploop, 87.2 0.37 1.3E-05 49.0 3.8 25 254-278 3-27 (196)
126 2qt1_A Nicotinamide riboside k 87.1 0.21 7.2E-06 52.0 2.0 26 253-278 20-45 (207)
127 3dl0_A Adenylate kinase; phosp 87.1 0.26 8.9E-06 51.6 2.7 22 257-278 3-24 (216)
128 3a4m_A L-seryl-tRNA(SEC) kinas 87.1 0.35 1.2E-05 52.6 3.8 29 254-282 4-32 (260)
129 2gza_A Type IV secretion syste 87.0 0.15 5.1E-06 58.6 0.8 28 253-280 174-201 (361)
130 2cdn_A Adenylate kinase; phosp 86.9 0.38 1.3E-05 49.7 3.8 28 251-278 17-44 (201)
131 1uf9_A TT1252 protein; P-loop, 86.8 0.34 1.2E-05 49.8 3.3 26 252-277 6-31 (203)
132 1a7j_A Phosphoribulokinase; tr 86.8 0.25 8.6E-06 54.9 2.5 26 254-279 5-30 (290)
133 2vli_A Antibiotic resistance p 86.8 0.23 7.9E-06 50.2 2.0 25 254-278 5-29 (183)
134 1zd8_A GTP:AMP phosphotransfer 86.8 0.25 8.7E-06 52.2 2.4 26 253-278 6-31 (227)
135 1vma_A Cell division protein F 86.7 0.48 1.6E-05 53.1 4.7 47 237-283 79-133 (306)
136 1lv7_A FTSH; alpha/beta domain 86.7 0.37 1.3E-05 51.9 3.7 26 253-278 44-69 (257)
137 1zak_A Adenylate kinase; ATP:A 86.7 0.31 1.1E-05 51.4 3.0 25 255-279 6-30 (222)
138 2i3b_A HCR-ntpase, human cance 86.7 0.33 1.1E-05 50.5 3.1 25 255-279 2-26 (189)
139 2ehv_A Hypothetical protein PH 86.6 0.42 1.4E-05 50.7 4.1 28 252-279 28-55 (251)
140 3tif_A Uncharacterized ABC tra 86.6 0.27 9.4E-06 52.8 2.6 25 252-276 29-53 (235)
141 2xk0_A Polycomb protein PCL; t 86.6 3.9 0.00013 35.1 9.0 52 112-165 14-65 (69)
142 2yhs_A FTSY, cell division pro 86.6 0.46 1.6E-05 56.7 4.6 49 235-283 265-322 (503)
143 4a74_A DNA repair and recombin 86.5 0.32 1.1E-05 51.0 3.0 27 253-279 24-50 (231)
144 2p5t_B PEZT; postsegregational 86.3 0.3 1E-05 52.9 2.7 27 252-278 30-56 (253)
145 2qz4_A Paraplegin; AAA+, SPG7, 86.3 0.4 1.4E-05 51.3 3.7 27 252-278 37-63 (262)
146 1nn5_A Similar to deoxythymidy 86.3 0.37 1.3E-05 49.9 3.4 29 253-281 8-36 (215)
147 2z4s_A Chromosomal replication 86.2 0.55 1.9E-05 55.3 5.1 40 242-281 117-157 (440)
148 3nwj_A ATSK2; P loop, shikimat 86.0 0.33 1.1E-05 52.8 2.8 25 254-278 48-72 (250)
149 2v54_A DTMP kinase, thymidylat 85.9 0.28 9.6E-06 50.5 2.1 25 254-278 4-28 (204)
150 1y63_A LMAJ004144AAA protein; 85.9 0.41 1.4E-05 48.9 3.4 25 253-277 9-33 (184)
151 1ukz_A Uridylate kinase; trans 85.7 0.43 1.5E-05 49.3 3.4 26 253-278 14-39 (203)
152 1zu4_A FTSY; GTPase, signal re 85.7 0.6 2E-05 52.7 4.8 31 253-283 104-134 (320)
153 3syl_A Protein CBBX; photosynt 85.6 0.74 2.5E-05 50.7 5.5 32 251-282 64-95 (309)
154 2gks_A Bifunctional SAT/APS ki 85.5 0.86 3E-05 55.2 6.5 50 231-280 345-398 (546)
155 2oap_1 GSPE-2, type II secreti 85.5 0.35 1.2E-05 58.1 3.0 26 254-279 260-285 (511)
156 2ze6_A Isopentenyl transferase 85.4 0.42 1.5E-05 51.8 3.3 23 256-278 3-25 (253)
157 1sxj_C Activator 1 40 kDa subu 85.3 0.63 2.1E-05 52.4 4.8 36 244-279 36-71 (340)
158 2qby_A CDC6 homolog 1, cell di 85.3 0.31 1.1E-05 55.0 2.3 35 247-281 38-72 (386)
159 1hqc_A RUVB; extended AAA-ATPa 85.3 0.98 3.4E-05 50.0 6.3 27 252-278 36-62 (324)
160 4edh_A DTMP kinase, thymidylat 85.2 0.47 1.6E-05 50.3 3.5 29 254-282 6-34 (213)
161 4fcw_A Chaperone protein CLPB; 85.2 0.52 1.8E-05 51.9 4.0 26 254-279 47-72 (311)
162 1nij_A Hypothetical protein YJ 85.0 0.38 1.3E-05 54.1 2.8 24 254-277 4-27 (318)
163 3uk6_A RUVB-like 2; hexameric 85.0 0.69 2.4E-05 52.3 5.0 25 255-279 71-95 (368)
164 1e4v_A Adenylate kinase; trans 84.9 0.43 1.5E-05 50.0 3.0 22 257-278 3-24 (214)
165 3r20_A Cytidylate kinase; stru 84.9 0.47 1.6E-05 51.1 3.3 26 254-279 9-34 (233)
166 3pvs_A Replication-associated 84.9 0.54 1.9E-05 55.5 4.1 86 243-335 39-124 (447)
167 2v1u_A Cell division control p 84.8 0.34 1.2E-05 54.8 2.4 30 251-280 41-70 (387)
168 1vht_A Dephospho-COA kinase; s 84.7 0.39 1.3E-05 50.3 2.6 23 254-276 4-26 (218)
169 4anj_A Unconventional myosin-V 84.7 0.86 2.9E-05 59.0 6.2 19 451-469 319-337 (1052)
170 1ixz_A ATP-dependent metallopr 84.7 0.41 1.4E-05 51.4 2.8 25 254-278 49-73 (254)
171 1jjv_A Dephospho-COA kinase; P 84.6 0.41 1.4E-05 49.7 2.6 21 256-276 4-24 (206)
172 1m8p_A Sulfate adenylyltransfe 84.5 0.79 2.7E-05 55.9 5.5 49 233-281 371-423 (573)
173 2if2_A Dephospho-COA kinase; a 84.5 0.37 1.3E-05 49.8 2.3 21 256-276 3-23 (204)
174 2xb4_A Adenylate kinase; ATP-b 84.2 0.52 1.8E-05 49.9 3.3 23 256-278 2-24 (223)
175 1sxj_E Activator 1 40 kDa subu 84.2 0.43 1.5E-05 53.7 2.8 36 244-279 25-61 (354)
176 1g8f_A Sulfate adenylyltransfe 84.2 0.45 1.5E-05 57.1 3.0 45 234-280 377-421 (511)
177 3b9p_A CG5977-PA, isoform A; A 84.1 0.48 1.6E-05 52.1 3.1 26 253-278 53-78 (297)
178 1r6b_X CLPA protein; AAA+, N-t 84.0 1.3 4.3E-05 55.7 7.2 66 214-280 167-233 (758)
179 4tmk_A Protein (thymidylate ki 83.9 0.56 1.9E-05 49.7 3.4 28 255-282 4-31 (213)
180 1mv5_A LMRA, multidrug resista 83.9 0.48 1.6E-05 51.1 2.9 28 252-279 26-53 (243)
181 2bjv_A PSP operon transcriptio 83.8 0.62 2.1E-05 50.3 3.7 26 253-278 28-53 (265)
182 2cbz_A Multidrug resistance-as 83.8 0.45 1.5E-05 51.2 2.6 27 252-278 29-55 (237)
183 2ff7_A Alpha-hemolysin translo 83.7 0.43 1.5E-05 51.7 2.4 25 253-277 34-58 (247)
184 3bas_A Myosin heavy chain, str 83.7 12 0.0004 34.0 11.6 78 949-1030 10-87 (89)
185 3tqc_A Pantothenate kinase; bi 83.6 0.69 2.4E-05 52.2 4.1 27 254-280 92-118 (321)
186 2ghi_A Transport protein; mult 83.6 0.45 1.5E-05 52.0 2.6 27 252-278 44-70 (260)
187 3lv8_A DTMP kinase, thymidylat 83.6 0.59 2E-05 50.4 3.4 29 254-282 27-55 (236)
188 1sxj_D Activator 1 41 kDa subu 83.6 0.66 2.3E-05 52.0 4.0 37 244-280 48-84 (353)
189 2onk_A Molybdate/tungstate ABC 83.6 0.53 1.8E-05 50.8 3.0 24 255-278 25-48 (240)
190 3b85_A Phosphate starvation-in 83.6 0.73 2.5E-05 48.6 4.1 31 244-277 15-45 (208)
191 2chq_A Replication factor C sm 83.6 0.59 2E-05 51.4 3.5 35 245-279 29-63 (319)
192 4eaq_A DTMP kinase, thymidylat 83.5 0.71 2.4E-05 49.3 4.0 28 253-280 25-52 (229)
193 3co5_A Putative two-component 83.5 0.24 8.2E-06 48.7 0.3 23 253-275 26-48 (143)
194 1aky_A Adenylate kinase; ATP:A 83.4 0.64 2.2E-05 48.8 3.6 25 254-278 4-28 (220)
195 3llm_A ATP-dependent RNA helic 83.4 0.9 3.1E-05 48.3 4.7 41 237-280 62-103 (235)
196 1jr3_A DNA polymerase III subu 83.4 1.1 3.6E-05 50.7 5.6 30 251-280 35-64 (373)
197 2d2e_A SUFC protein; ABC-ATPas 83.2 0.54 1.8E-05 51.0 2.9 25 253-277 28-52 (250)
198 1uj2_A Uridine-cytidine kinase 83.2 0.62 2.1E-05 50.2 3.4 27 253-279 21-47 (252)
199 3pxg_A Negative regulator of g 83.0 1.4 4.7E-05 52.3 6.6 62 218-280 165-227 (468)
200 1in4_A RUVB, holliday junction 83.0 1.1 3.6E-05 50.6 5.4 27 252-278 49-75 (334)
201 3h4m_A Proteasome-activating n 82.9 0.58 2E-05 51.0 3.1 27 252-278 49-75 (285)
202 1ko7_A HPR kinase/phosphatase; 82.9 0.58 2E-05 52.6 3.1 24 254-277 144-167 (314)
203 2zu0_C Probable ATP-dependent 82.9 0.58 2E-05 51.3 3.0 26 252-277 44-69 (267)
204 2ixe_A Antigen peptide transpo 82.8 0.51 1.7E-05 51.9 2.6 27 252-278 43-69 (271)
205 1b0u_A Histidine permease; ABC 82.7 0.51 1.7E-05 51.6 2.5 25 252-276 30-54 (262)
206 3gfo_A Cobalt import ATP-bindi 82.7 0.47 1.6E-05 52.3 2.3 25 253-277 33-57 (275)
207 3v9p_A DTMP kinase, thymidylat 82.7 0.63 2.2E-05 49.9 3.2 29 253-281 24-52 (227)
208 1knx_A Probable HPR(Ser) kinas 82.7 0.52 1.8E-05 53.0 2.6 23 254-276 147-169 (312)
209 2fxo_A Myosin heavy chain, car 82.6 13 0.00044 36.1 12.2 21 1013-1033 104-124 (129)
210 2pcj_A ABC transporter, lipopr 82.6 0.45 1.5E-05 50.7 2.0 23 253-275 29-51 (224)
211 4g1u_C Hemin import ATP-bindin 82.6 0.49 1.7E-05 51.9 2.4 26 253-278 36-61 (266)
212 2dr3_A UPF0273 protein PH0284; 82.5 0.86 2.9E-05 48.1 4.2 30 253-282 22-51 (247)
213 1iy2_A ATP-dependent metallopr 82.5 0.59 2E-05 51.1 3.0 25 254-278 73-97 (278)
214 3cf0_A Transitional endoplasmi 82.4 0.61 2.1E-05 51.8 3.1 27 252-278 47-73 (301)
215 2olj_A Amino acid ABC transpor 82.4 0.53 1.8E-05 51.6 2.5 25 252-276 48-72 (263)
216 2pt7_A CAG-ALFA; ATPase, prote 82.0 0.28 9.7E-06 55.6 0.1 28 253-280 170-197 (330)
217 3sop_A Neuronal-specific septi 81.8 0.63 2.2E-05 51.1 2.9 27 256-282 4-30 (270)
218 1g6h_A High-affinity branched- 81.8 0.56 1.9E-05 51.1 2.4 25 253-277 32-56 (257)
219 1cr0_A DNA primase/helicase; R 81.7 0.84 2.9E-05 50.3 3.8 29 252-280 33-61 (296)
220 3ld9_A DTMP kinase, thymidylat 81.7 1 3.6E-05 48.0 4.4 30 251-280 18-47 (223)
221 1sgw_A Putative ABC transporte 81.7 0.49 1.7E-05 50.2 1.8 25 253-277 34-58 (214)
222 1sxj_B Activator 1 37 kDa subu 81.6 1.1 3.9E-05 49.2 4.9 35 245-279 33-67 (323)
223 2yz2_A Putative ABC transporte 81.6 0.6 2.1E-05 51.1 2.6 25 252-276 31-55 (266)
224 2pze_A Cystic fibrosis transme 81.5 0.58 2E-05 50.0 2.4 26 253-278 33-58 (229)
225 3na7_A HP0958; flagellar bioge 81.4 9.8 0.00034 41.3 12.2 31 1113-1143 132-162 (256)
226 1vpl_A ABC transporter, ATP-bi 81.4 0.61 2.1E-05 50.8 2.5 25 252-276 39-63 (256)
227 3pfi_A Holliday junction ATP-d 81.3 1 3.5E-05 50.4 4.4 28 251-278 52-79 (338)
228 2px0_A Flagellar biosynthesis 81.2 0.88 3E-05 50.7 3.8 29 252-280 103-131 (296)
229 1ls1_A Signal recognition part 81.2 1.1 3.8E-05 49.8 4.6 31 253-283 97-127 (295)
230 4ag6_A VIRB4 ATPase, type IV s 81.1 0.8 2.7E-05 52.8 3.5 30 253-282 34-63 (392)
231 3foz_A TRNA delta(2)-isopenten 81.0 0.82 2.8E-05 51.3 3.4 31 248-278 4-34 (316)
232 2cvh_A DNA repair and recombin 81.0 0.75 2.5E-05 47.7 2.9 25 252-276 18-42 (220)
233 3hnw_A Uncharacterized protein 81.0 10 0.00036 37.3 10.9 65 959-1027 67-131 (138)
234 2qmh_A HPR kinase/phosphorylas 81.0 0.74 2.5E-05 48.5 2.8 27 253-279 33-59 (205)
235 2grj_A Dephospho-COA kinase; T 81.0 0.86 2.9E-05 47.4 3.4 27 252-278 10-36 (192)
236 1um8_A ATP-dependent CLP prote 81.0 0.85 2.9E-05 52.1 3.7 26 253-278 71-96 (376)
237 2ga8_A Hypothetical 39.9 kDa p 80.9 1.7 5.7E-05 49.8 5.9 41 239-279 6-49 (359)
238 2r62_A Cell division protease 80.9 0.49 1.7E-05 51.1 1.5 26 253-278 43-68 (268)
239 3be4_A Adenylate kinase; malar 80.8 0.76 2.6E-05 48.3 3.0 24 255-278 6-29 (217)
240 3kl4_A SRP54, signal recogniti 80.8 1.8 6E-05 50.9 6.3 31 253-283 96-126 (433)
241 1ji0_A ABC transporter; ATP bi 80.8 0.64 2.2E-05 50.0 2.4 25 253-277 31-55 (240)
242 3rlf_A Maltose/maltodextrin im 80.7 0.75 2.6E-05 53.1 3.0 25 253-277 28-52 (381)
243 1ak2_A Adenylate kinase isoenz 80.6 0.87 3E-05 48.4 3.3 26 254-279 16-41 (233)
244 1w5s_A Origin recognition comp 80.1 1.4 4.9E-05 50.3 5.2 38 243-280 36-78 (412)
245 1a5t_A Delta prime, HOLB; zinc 80.1 1.7 5.7E-05 49.0 5.7 31 250-280 20-50 (334)
246 3nh6_A ATP-binding cassette SU 80.1 0.34 1.2E-05 54.3 -0.1 28 252-279 78-105 (306)
247 3u61_B DNA polymerase accessor 80.0 2 6.8E-05 47.7 6.2 52 223-278 16-72 (324)
248 2nq2_C Hypothetical ABC transp 79.9 0.7 2.4E-05 50.2 2.4 25 253-277 30-54 (253)
249 1g8p_A Magnesium-chelatase 38 79.9 0.79 2.7E-05 51.3 2.9 26 253-278 44-69 (350)
250 2qi9_C Vitamin B12 import ATP- 79.8 0.72 2.5E-05 50.1 2.4 25 253-277 25-49 (249)
251 3hws_A ATP-dependent CLP prote 79.7 1 3.4E-05 51.3 3.7 26 253-278 50-75 (363)
252 3tmk_A Thymidylate kinase; pho 79.7 0.88 3E-05 48.4 3.0 26 254-279 5-30 (216)
253 2ihy_A ABC transporter, ATP-bi 79.7 0.72 2.5E-05 51.0 2.4 25 253-277 46-70 (279)
254 2qgz_A Helicase loader, putati 79.6 1.7 5.7E-05 48.6 5.4 28 254-281 152-180 (308)
255 1q3t_A Cytidylate kinase; nucl 79.4 1.1 3.9E-05 47.5 3.8 27 252-278 14-40 (236)
256 2v4h_A NF-kappa-B essential mo 79.3 21 0.00073 33.4 11.6 34 962-995 26-59 (110)
257 1n0w_A DNA repair protein RAD5 79.3 0.86 2.9E-05 48.1 2.8 25 253-277 23-47 (243)
258 2fxo_A Myosin heavy chain, car 79.2 22 0.00074 34.5 12.5 11 1015-1025 113-123 (129)
259 3d3q_A TRNA delta(2)-isopenten 79.0 0.87 3E-05 51.8 2.8 25 255-279 8-32 (340)
260 3vkg_A Dynein heavy chain, cyt 79.0 16 0.00054 52.7 15.8 74 958-1031 1932-2005(3245)
261 1ojl_A Transcriptional regulat 78.8 0.84 2.9E-05 50.9 2.6 27 252-278 23-49 (304)
262 1ltq_A Polynucleotide kinase; 78.7 1.1 3.7E-05 49.3 3.5 23 255-277 3-25 (301)
263 2pjz_A Hypothetical protein ST 78.6 0.79 2.7E-05 50.2 2.3 24 254-277 30-53 (263)
264 3kta_A Chromosome segregation 78.4 0.95 3.3E-05 45.7 2.7 24 255-278 27-50 (182)
265 1sxj_A Activator 1 95 kDa subu 78.4 1 3.5E-05 54.0 3.4 26 253-278 76-101 (516)
266 1lw7_A Transcriptional regulat 78.4 0.88 3E-05 52.0 2.7 27 254-280 170-196 (365)
267 3fvq_A Fe(3+) IONS import ATP- 78.3 0.9 3.1E-05 52.1 2.7 25 253-277 29-53 (359)
268 3tui_C Methionine import ATP-b 78.2 1 3.4E-05 51.8 3.0 25 252-276 52-76 (366)
269 2ocp_A DGK, deoxyguanosine kin 78.2 0.97 3.3E-05 48.2 2.8 26 254-279 2-27 (241)
270 2h92_A Cytidylate kinase; ross 78.2 1 3.4E-05 47.1 2.8 25 254-278 3-27 (219)
271 3dm5_A SRP54, signal recogniti 78.1 2 6.9E-05 50.5 5.7 30 253-282 99-128 (443)
272 2yyz_A Sugar ABC transporter, 77.8 1.1 3.6E-05 51.5 3.1 25 253-277 28-52 (359)
273 3pxi_A Negative regulator of g 77.8 2.4 8.2E-05 53.3 6.6 62 218-280 165-227 (758)
274 3na7_A HP0958; flagellar bioge 77.7 18 0.00061 39.2 12.7 77 951-1027 88-164 (256)
275 2bbs_A Cystic fibrosis transme 77.6 0.85 2.9E-05 50.7 2.2 27 252-278 62-88 (290)
276 3eie_A Vacuolar protein sortin 77.4 1.2 4.2E-05 49.7 3.5 26 253-278 50-75 (322)
277 2ffh_A Protein (FFH); SRP54, s 77.2 1.5 5.3E-05 51.3 4.3 31 253-283 97-127 (425)
278 3t15_A Ribulose bisphosphate c 77.2 1.2 4.1E-05 49.3 3.2 27 252-278 34-60 (293)
279 3d8b_A Fidgetin-like protein 1 77.1 1.1 3.8E-05 51.0 3.1 27 252-278 115-141 (357)
280 2it1_A 362AA long hypothetical 77.0 1.1 3.9E-05 51.3 3.0 25 253-277 28-52 (362)
281 2x8a_A Nuclear valosin-contain 77.0 1.1 3.8E-05 49.2 2.8 25 254-278 44-68 (274)
282 2f6r_A COA synthase, bifunctio 76.8 1.3 4.6E-05 48.6 3.5 24 253-276 74-97 (281)
283 3sr0_A Adenylate kinase; phosp 76.7 1.4 4.7E-05 46.4 3.4 22 257-278 3-24 (206)
284 1nlf_A Regulatory protein REPA 76.6 1.2 4.2E-05 48.6 3.1 27 253-279 29-55 (279)
285 1z47_A CYSA, putative ABC-tran 76.5 1.2 4E-05 51.1 2.9 24 253-276 40-63 (355)
286 2qm8_A GTPase/ATPase; G protei 76.5 2 6.9E-05 48.6 4.9 42 242-283 42-84 (337)
287 3exa_A TRNA delta(2)-isopenten 76.5 0.99 3.4E-05 50.8 2.3 24 255-278 4-27 (322)
288 1v43_A Sugar-binding transport 76.3 1.2 4.2E-05 51.2 3.0 25 253-277 36-60 (372)
289 1j8m_F SRP54, signal recogniti 76.3 1.9 6.4E-05 48.0 4.5 30 254-283 98-127 (297)
290 1w7j_A Myosin VA; motor protei 76.3 2.1 7E-05 54.1 5.3 27 894-920 768-794 (795)
291 3m6a_A ATP-dependent protease 76.1 1.6 5.4E-05 52.8 4.1 33 246-278 100-132 (543)
292 2hf9_A Probable hydrogenase ni 76.0 2.4 8.1E-05 44.2 5.0 34 246-279 30-63 (226)
293 1vec_A ATP-dependent RNA helic 75.8 3.9 0.00013 41.8 6.5 57 211-273 3-59 (206)
294 3ice_A Transcription terminati 75.6 2.3 7.9E-05 49.2 5.0 47 235-281 155-201 (422)
295 1g29_1 MALK, maltose transport 75.5 1.3 4.3E-05 51.1 2.9 24 253-276 28-51 (372)
296 3hjn_A DTMP kinase, thymidylat 75.4 1.8 6.1E-05 45.1 3.8 26 257-282 3-28 (197)
297 1xwi_A SKD1 protein; VPS4B, AA 75.4 1.3 4.6E-05 49.6 3.1 26 253-278 44-69 (322)
298 2wsm_A Hydrogenase expression/ 75.4 2.1 7.2E-05 44.4 4.4 29 251-279 27-55 (221)
299 3umf_A Adenylate kinase; rossm 75.3 1.6 5.4E-05 46.5 3.4 27 252-278 27-53 (217)
300 3gd7_A Fusion complex of cysti 75.2 1.2 4.2E-05 51.5 2.7 28 252-279 45-72 (390)
301 3pey_A ATP-dependent RNA helic 75.2 3.8 0.00013 46.0 6.8 62 210-275 4-65 (395)
302 3eph_A TRNA isopentenyltransfe 75.1 1.3 4.6E-05 51.4 3.0 23 256-278 4-26 (409)
303 3zvl_A Bifunctional polynucleo 75.0 1 3.5E-05 52.6 2.0 28 251-278 255-282 (416)
304 3d31_A Sulfate/molybdate ABC t 74.9 0.99 3.4E-05 51.5 1.8 23 253-275 25-47 (348)
305 3crm_A TRNA delta(2)-isopenten 74.6 1.3 4.4E-05 50.0 2.6 25 254-278 5-29 (323)
306 1tue_A Replication protein E1; 74.6 1.5 5E-05 46.5 2.8 36 243-278 46-82 (212)
307 2qp9_X Vacuolar protein sortin 74.5 1.4 4.9E-05 50.1 3.0 25 254-278 84-108 (355)
308 3ch4_B Pmkase, phosphomevalona 74.5 1.5 5.2E-05 46.1 3.0 23 256-278 13-35 (202)
309 3upu_A ATP-dependent DNA helic 74.4 2.8 9.6E-05 49.3 5.6 29 255-283 46-74 (459)
310 2obl_A ESCN; ATPase, hydrolase 74.3 1.3 4.3E-05 50.6 2.4 37 242-278 59-95 (347)
311 1x6v_B Bifunctional 3'-phospho 74.3 2.4 8.3E-05 52.0 5.1 29 253-281 51-79 (630)
312 2yv5_A YJEQ protein; hydrolase 74.0 1.9 6.6E-05 47.9 3.8 31 245-275 156-186 (302)
313 2npi_A Protein CLP1; CLP1-PCF1 74.0 1.1 3.6E-05 53.2 1.8 32 252-283 136-167 (460)
314 3oja_B Anopheles plasmodium-re 73.4 45 0.0015 40.2 16.1 73 957-1029 506-581 (597)
315 2zts_A Putative uncharacterize 73.0 2.6 8.9E-05 44.3 4.4 28 253-280 29-56 (251)
316 2dpy_A FLII, flagellum-specifi 72.9 1.5 5.2E-05 51.5 2.8 36 243-278 146-181 (438)
317 3ber_A Probable ATP-dependent 72.8 4.4 0.00015 43.4 6.2 65 210-280 42-107 (249)
318 1qvr_A CLPB protein; coiled co 72.6 2.2 7.6E-05 54.4 4.4 32 249-280 186-217 (854)
319 2gxq_A Heat resistant RNA depe 72.6 4.2 0.00014 41.5 5.8 61 213-279 3-64 (207)
320 3euj_A Chromosome partition pr 72.3 1.8 6.1E-05 51.6 3.2 29 255-283 30-58 (483)
321 3fdi_A Uncharacterized protein 72.3 1.6 5.4E-05 45.6 2.4 24 255-278 7-30 (201)
322 1w36_D RECD, exodeoxyribonucle 72.2 4.5 0.00015 49.5 6.9 28 254-281 164-191 (608)
323 2xau_A PRE-mRNA-splicing facto 72.2 3.5 0.00012 52.1 6.0 59 210-274 71-129 (773)
324 1oxx_K GLCV, glucose, ABC tran 72.1 1 3.6E-05 51.4 1.1 25 253-277 30-54 (353)
325 3o0z_A RHO-associated protein 72.0 15 0.00053 37.1 9.4 18 1113-1130 143-160 (168)
326 3vfd_A Spastin; ATPase, microt 72.0 1.7 5.8E-05 50.0 2.9 25 253-277 147-171 (389)
327 2l53_B CAM, voltage-gated sodi 71.8 2.5 8.6E-05 30.9 2.6 19 918-936 7-25 (31)
328 1t6n_A Probable ATP-dependent 71.5 9 0.00031 39.6 8.2 63 209-277 12-74 (220)
329 3cvf_A Homer-3, homer protein 71.4 15 0.0005 32.7 7.9 56 968-1023 7-62 (79)
330 2qen_A Walker-type ATPase; unk 71.1 2.7 9.4E-05 46.5 4.3 23 255-277 32-54 (350)
331 1qde_A EIF4A, translation init 71.0 3.9 0.00013 42.5 5.2 61 212-278 15-76 (224)
332 3hdt_A Putative kinase; struct 70.8 2 7E-05 45.7 2.9 26 254-279 14-39 (223)
333 1pzn_A RAD51, DNA repair and r 70.7 2 6.8E-05 48.9 3.0 34 244-277 119-154 (349)
334 3b5x_A Lipid A export ATP-bind 70.5 1.5 5E-05 53.5 1.9 28 252-279 367-394 (582)
335 2kxw_B Sodium channel protein 70.3 2.1 7.3E-05 30.3 1.9 17 918-934 7-23 (27)
336 3k1j_A LON protease, ATP-depen 70.0 2.2 7.7E-05 52.1 3.5 25 255-279 61-85 (604)
337 2b8t_A Thymidine kinase; deoxy 69.7 3.4 0.00012 44.1 4.3 28 253-280 11-38 (223)
338 3fht_A ATP-dependent RNA helic 69.7 4.7 0.00016 45.7 5.9 67 208-278 22-89 (412)
339 3hu3_A Transitional endoplasmi 69.5 2.1 7.2E-05 51.1 3.0 26 252-277 236-261 (489)
340 1tf7_A KAIC; homohexamer, hexa 69.1 1.9 6.3E-05 51.9 2.4 37 244-280 27-66 (525)
341 2axn_A 6-phosphofructo-2-kinas 68.9 2.9 9.9E-05 50.2 4.1 30 252-281 33-62 (520)
342 3cve_A Homer protein homolog 1 68.8 37 0.0013 29.6 9.7 52 972-1023 5-56 (72)
343 2xxa_A Signal recognition part 68.4 3.5 0.00012 48.4 4.5 30 252-281 98-127 (433)
344 2f9l_A RAB11B, member RAS onco 68.3 2.6 8.9E-05 43.0 3.0 20 256-275 7-26 (199)
345 2eqb_B RAB guanine nucleotide 68.3 46 0.0016 30.7 10.8 51 958-1008 24-74 (97)
346 3b60_A Lipid A export ATP-bind 68.2 1.4 4.8E-05 53.7 1.1 27 252-278 367-393 (582)
347 1ry6_A Internal kinesin; kines 68.1 3.6 0.00012 47.1 4.4 36 236-271 66-102 (360)
348 1yqt_A RNAse L inhibitor; ATP- 68.1 2.3 7.8E-05 51.4 2.9 27 253-279 46-72 (538)
349 2yl4_A ATP-binding cassette SU 67.8 2 6.9E-05 52.5 2.4 27 252-278 368-394 (595)
350 4hlc_A DTMP kinase, thymidylat 67.7 2.9 0.0001 43.8 3.3 24 256-279 4-27 (205)
351 3qf4_B Uncharacterized ABC tra 67.6 2.1 7.2E-05 52.4 2.5 27 252-278 379-405 (598)
352 1p5z_B DCK, deoxycytidine kina 67.6 1 3.6E-05 48.7 -0.2 26 253-278 23-48 (263)
353 2c9o_A RUVB-like 1; hexameric 67.5 4.8 0.00016 47.3 5.5 26 254-279 63-88 (456)
354 3jsv_C NF-kappa-B essential mo 67.2 36 0.0012 31.1 9.7 22 1011-1032 66-87 (94)
355 3a7p_A Autophagy protein 16; c 67.2 75 0.0026 31.6 12.8 57 954-1010 69-125 (152)
356 1oix_A RAS-related protein RAB 67.1 2.5 8.6E-05 43.0 2.6 20 256-275 31-50 (191)
357 2fna_A Conserved hypothetical 66.7 4.3 0.00015 45.0 4.6 24 255-278 31-54 (357)
358 1e9r_A Conjugal transfer prote 66.5 2.7 9.1E-05 49.0 3.0 29 253-281 52-80 (437)
359 3u1c_A Tropomyosin alpha-1 cha 66.3 73 0.0025 29.4 12.2 46 964-1009 27-72 (101)
360 1bif_A 6-phosphofructo-2-kinas 66.3 3.4 0.00012 48.8 3.9 29 252-280 37-65 (469)
361 3a8t_A Adenylate isopentenyltr 66.3 2.4 8E-05 48.2 2.3 26 252-277 38-63 (339)
362 2qag_B Septin-6, protein NEDD5 66.3 2.8 9.6E-05 49.1 3.0 25 252-276 38-64 (427)
363 2ce7_A Cell division protein F 65.9 3.3 0.00011 49.3 3.6 24 253-276 48-71 (476)
364 3e1s_A Exodeoxyribonuclease V, 65.9 4.4 0.00015 49.3 4.9 29 254-282 204-232 (574)
365 3ol1_A Vimentin; structural ge 65.9 72 0.0025 30.4 12.4 69 958-1026 46-114 (119)
366 2zan_A Vacuolar protein sortin 65.8 2.7 9.2E-05 49.4 2.8 26 253-278 166-191 (444)
367 2pl3_A Probable ATP-dependent 65.6 7.2 0.00025 40.9 5.9 65 210-280 24-89 (236)
368 1go4_E MAD1 (mitotic arrest de 65.6 18 0.00062 33.6 7.6 66 968-1033 13-95 (100)
369 1hv8_A Putative ATP-dependent 65.5 8.6 0.00029 42.6 6.8 61 212-277 7-67 (367)
370 3ozx_A RNAse L inhibitor; ATP 65.2 2.8 9.6E-05 50.6 2.9 27 252-278 23-49 (538)
371 1tq4_A IIGP1, interferon-induc 65.1 3.4 0.00012 48.2 3.4 25 254-278 69-93 (413)
372 2jee_A YIIU; FTSZ, septum, coi 65.1 76 0.0026 28.3 11.4 30 963-992 9-38 (81)
373 3hr8_A Protein RECA; alpha and 64.8 4.1 0.00014 46.5 4.0 39 244-282 48-89 (356)
374 1qvr_A CLPB protein; coiled co 64.5 3.3 0.00011 52.8 3.6 25 255-279 589-613 (854)
375 1u0l_A Probable GTPase ENGC; p 64.5 3.1 0.00011 46.1 2.9 24 253-276 168-191 (301)
376 1yrb_A ATP(GTP)binding protein 64.5 3.6 0.00012 43.9 3.3 28 252-279 12-39 (262)
377 3j16_B RLI1P; ribosome recycli 64.3 3 0.0001 51.1 2.9 28 252-279 101-128 (608)
378 1q0u_A Bstdead; DEAD protein, 64.2 6.5 0.00022 40.8 5.2 62 211-278 4-66 (219)
379 2gno_A DNA polymerase III, gam 64.1 5.4 0.00019 44.4 4.8 34 244-277 8-41 (305)
380 1z2a_A RAS-related protein RAB 64.0 3.7 0.00013 39.9 3.0 20 256-275 7-26 (168)
381 2rcn_A Probable GTPase ENGC; Y 63.9 3.3 0.00011 47.4 3.0 25 253-277 214-238 (358)
382 2qag_C Septin-7; cell cycle, c 63.8 2.9 9.8E-05 48.9 2.5 25 251-275 28-52 (418)
383 4a82_A Cystic fibrosis transme 63.7 1.9 6.5E-05 52.5 1.0 27 252-278 365-391 (578)
384 1ypw_A Transitional endoplasmi 63.7 2.8 9.6E-05 53.1 2.6 26 252-277 236-261 (806)
385 3lda_A DNA repair protein RAD5 63.6 2.9 9.8E-05 48.6 2.5 32 244-275 166-199 (400)
386 2dhr_A FTSH; AAA+ protein, hex 63.5 3.1 0.00011 49.7 2.8 24 254-277 64-87 (499)
387 3pxi_A Negative regulator of g 63.3 3.7 0.00013 51.6 3.6 24 256-279 523-546 (758)
388 3gbj_A KIF13B protein; kinesin 63.3 5.5 0.00019 45.5 4.7 21 251-271 90-110 (354)
389 3qii_A PHD finger protein 20; 63.3 8.9 0.00031 34.5 5.0 45 119-166 28-73 (85)
390 2zej_A Dardarin, leucine-rich 63.2 3.1 0.0001 41.9 2.3 20 256-275 4-23 (184)
391 3qf4_A ABC transporter, ATP-bi 63.0 2.3 7.7E-05 52.0 1.5 27 252-278 367-393 (587)
392 2r44_A Uncharacterized protein 62.6 4 0.00014 45.4 3.4 24 255-278 47-70 (331)
393 2p67_A LAO/AO transport system 62.5 5.2 0.00018 45.2 4.3 42 242-283 43-85 (341)
394 2zr9_A Protein RECA, recombina 62.5 4.4 0.00015 46.1 3.7 30 253-282 60-89 (349)
395 3fmp_B ATP-dependent RNA helic 62.5 7.5 0.00026 45.5 5.9 61 209-273 90-150 (479)
396 3dc4_A Kinesin-like protein NO 62.4 5.3 0.00018 45.4 4.3 21 251-271 92-112 (344)
397 1bg2_A Kinesin; motor protein, 62.2 5.8 0.0002 44.7 4.5 21 251-271 75-95 (325)
398 2qnr_A Septin-2, protein NEDD5 62.2 3.1 0.00011 46.2 2.3 25 252-276 16-40 (301)
399 3fe2_A Probable ATP-dependent 62.2 21 0.00071 37.6 8.8 65 209-279 27-92 (242)
400 2v3c_C SRP54, signal recogniti 62.2 3.7 0.00013 48.2 3.0 29 254-282 99-127 (432)
401 2dyk_A GTP-binding protein; GT 62.1 4.1 0.00014 39.3 3.0 20 256-275 3-22 (161)
402 1r6b_X CLPA protein; AAA+, N-t 62.0 4 0.00014 51.1 3.6 25 254-278 488-512 (758)
403 3eiq_A Eukaryotic initiation f 61.7 10 0.00035 43.0 6.6 62 211-278 40-102 (414)
404 3oja_B Anopheles plasmodium-re 61.7 42 0.0014 40.4 12.4 68 965-1032 507-577 (597)
405 1wt6_A Myotonin-protein kinase 61.5 54 0.0018 29.1 9.4 42 965-1006 15-56 (81)
406 2zj8_A DNA helicase, putative 61.5 5.4 0.00019 49.6 4.6 63 213-280 3-66 (720)
407 2v71_A Nuclear distribution pr 61.5 56 0.0019 33.8 11.2 62 965-1026 47-108 (189)
408 2wji_A Ferrous iron transport 61.3 4.1 0.00014 40.2 2.8 21 255-275 4-24 (165)
409 4a14_A Kinesin, kinesin-like p 61.3 6.1 0.00021 44.9 4.6 35 236-271 66-101 (344)
410 2ce2_X GTPase HRAS; signaling 61.3 3.9 0.00013 39.4 2.6 20 256-275 5-24 (166)
411 3tnu_B Keratin, type II cytosk 61.2 49 0.0017 31.9 10.4 29 991-1019 78-106 (129)
412 1tf7_A KAIC; homohexamer, hexa 61.2 4.1 0.00014 48.9 3.3 35 246-280 271-307 (525)
413 3o0z_A RHO-associated protein 61.1 56 0.0019 33.1 10.9 25 966-990 54-78 (168)
414 2j37_W Signal recognition part 61.0 8.8 0.0003 45.9 6.1 30 253-282 100-129 (504)
415 1u8z_A RAS-related protein RAL 60.7 4.6 0.00016 39.1 3.0 20 256-275 6-25 (168)
416 3thx_A DNA mismatch repair pro 60.5 5.2 0.00018 51.4 4.2 30 253-282 661-692 (934)
417 3nwn_A Kinesin-like protein KI 60.5 5.7 0.0002 45.4 4.2 27 244-271 96-122 (359)
418 2y65_A Kinesin, kinesin heavy 60.3 6.4 0.00022 45.1 4.5 21 251-271 82-102 (365)
419 3bh0_A DNAB-like replicative h 60.2 5.2 0.00018 44.6 3.7 27 252-278 66-92 (315)
420 2wjg_A FEOB, ferrous iron tran 60.2 4.4 0.00015 40.5 2.8 21 255-275 8-28 (188)
421 1s2m_A Putative ATP-dependent 60.0 12 0.00042 42.2 6.9 60 210-275 20-79 (400)
422 2wbe_C Bipolar kinesin KRP-130 60.0 7.1 0.00024 44.9 4.8 35 236-271 83-118 (373)
423 2r2a_A Uncharacterized protein 59.9 4.4 0.00015 42.4 2.8 18 256-273 7-24 (199)
424 2ged_A SR-beta, signal recogni 59.7 4.7 0.00016 40.5 3.0 20 256-275 50-69 (193)
425 3bk7_A ABC transporter ATP-bin 59.7 3.9 0.00013 50.1 2.7 26 253-278 116-141 (607)
426 3p8d_A Medulloblastoma antigen 59.7 12 0.00041 32.2 5.0 45 119-166 13-58 (67)
427 2fz4_A DNA repair protein RAD2 59.7 5.1 0.00017 42.7 3.4 33 243-278 100-132 (237)
428 3l0o_A Transcription terminati 59.6 8.4 0.00029 44.6 5.2 59 207-280 143-201 (427)
429 1goj_A Kinesin, kinesin heavy 59.5 6.5 0.00022 44.9 4.4 36 235-271 62-98 (355)
430 3p32_A Probable GTPase RV1496/ 59.5 8.9 0.0003 43.5 5.6 44 239-282 63-107 (355)
431 2owm_A Nckin3-434, related to 59.5 7.6 0.00026 45.6 5.1 21 251-271 134-154 (443)
432 3lre_A Kinesin-like protein KI 59.3 6 0.0002 45.2 4.0 21 251-271 103-123 (355)
433 1ek0_A Protein (GTP-binding pr 59.2 5 0.00017 38.9 3.0 20 256-275 5-24 (170)
434 1x88_A Kinesin-like protein KI 59.2 7.3 0.00025 44.5 4.8 21 251-271 86-106 (359)
435 3ozx_A RNAse L inhibitor; ATP 59.0 3.4 0.00011 49.9 2.0 27 253-279 293-319 (538)
436 1ky3_A GTP-binding protein YPT 59.0 5 0.00017 39.5 3.0 22 254-275 8-29 (182)
437 3ly5_A ATP-dependent RNA helic 58.8 10 0.00035 40.8 5.7 36 242-280 82-118 (262)
438 3t0q_A AGR253WP; kinesin, alph 58.8 6.7 0.00023 44.7 4.3 21 251-271 83-103 (349)
439 1v5w_A DMC1, meiotic recombina 58.7 5.3 0.00018 45.1 3.5 33 244-276 110-144 (343)
440 2nr8_A Kinesin-like protein KI 58.7 6.4 0.00022 45.0 4.2 27 244-271 95-121 (358)
441 1kao_A RAP2A; GTP-binding prot 58.4 5.2 0.00018 38.6 3.0 21 255-275 4-24 (167)
442 2orw_A Thymidine kinase; TMTK, 58.4 6.2 0.00021 40.4 3.6 25 254-278 3-28 (184)
443 2zfi_A Kinesin-like protein KI 58.3 7.2 0.00025 44.7 4.5 21 251-271 87-107 (366)
444 3bor_A Human initiation factor 58.2 7.4 0.00025 41.1 4.3 28 243-273 59-86 (237)
445 2equ_A PHD finger protein 20-l 58.2 25 0.00084 30.9 6.9 51 117-167 11-62 (74)
446 1pui_A ENGB, probable GTP-bind 58.0 3.2 0.00011 42.5 1.3 25 251-275 23-47 (210)
447 2www_A Methylmalonic aciduria 57.9 9.5 0.00032 43.2 5.4 29 254-282 74-102 (349)
448 1c1y_A RAS-related protein RAP 57.8 5.5 0.00019 38.6 3.0 20 256-275 5-24 (167)
449 3tnu_A Keratin, type I cytoske 57.8 38 0.0013 32.8 9.0 30 990-1019 79-108 (131)
450 4hcz_A PHD finger protein 1; p 57.8 33 0.0011 28.5 7.0 49 117-165 5-55 (58)
451 1z08_A RAS-related protein RAB 57.7 5.4 0.00018 38.8 3.0 21 255-275 7-27 (170)
452 1z0j_A RAB-22, RAS-related pro 57.7 5.5 0.00019 38.7 3.0 19 256-274 8-26 (170)
453 3szr_A Interferon-induced GTP- 57.6 4 0.00014 50.0 2.3 21 257-277 48-68 (608)
454 1u94_A RECA protein, recombina 57.5 6.7 0.00023 44.7 4.1 30 253-282 62-91 (356)
455 2va8_A SSO2462, SKI2-type heli 57.5 6.7 0.00023 48.7 4.4 63 213-280 10-73 (715)
456 1wms_A RAB-9, RAB9, RAS-relate 57.5 5.5 0.00019 39.2 3.0 20 256-275 9-28 (177)
457 3of5_A Dethiobiotin synthetase 57.3 7.4 0.00025 41.4 4.1 30 254-283 4-34 (228)
458 1t5c_A CENP-E protein, centrom 57.3 6.1 0.00021 45.0 3.6 21 251-271 75-95 (349)
459 2erx_A GTP-binding protein DI- 57.1 5.4 0.00018 38.8 2.8 21 255-275 4-24 (172)
460 2fn4_A P23, RAS-related protei 56.9 5 0.00017 39.4 2.6 21 255-275 10-30 (181)
461 2r6a_A DNAB helicase, replicat 56.7 6.1 0.00021 46.4 3.7 28 253-280 202-229 (454)
462 1c9k_A COBU, adenosylcobinamid 56.6 4.9 0.00017 41.5 2.4 19 257-275 2-20 (180)
463 3ux8_A Excinuclease ABC, A sub 56.5 3.2 0.00011 51.4 1.2 23 253-275 347-369 (670)
464 2h58_A Kinesin-like protein KI 56.5 6.7 0.00023 44.3 3.8 21 251-271 78-98 (330)
465 2v71_A Nuclear distribution pr 56.4 1.1E+02 0.0037 31.7 12.3 45 982-1026 57-101 (189)
466 3b6u_A Kinesin-like protein KI 56.2 7.5 0.00026 44.6 4.2 35 236-271 84-119 (372)
467 1nrj_B SR-beta, signal recogni 56.1 5.8 0.0002 40.8 3.0 22 254-275 12-33 (218)
468 2vvg_A Kinesin-2; motor protei 56.0 7.3 0.00025 44.4 4.0 21 251-271 87-107 (350)
469 3u1c_A Tropomyosin alpha-1 cha 55.9 1.3E+02 0.0043 27.8 12.8 46 965-1010 21-66 (101)
470 1v8k_A Kinesin-like protein KI 55.9 6.7 0.00023 45.6 3.7 21 251-271 152-172 (410)
471 1qhl_A Protein (cell division 55.8 2.8 9.6E-05 44.8 0.5 25 257-281 30-54 (227)
472 3b6e_A Interferon-induced heli 55.8 5 0.00017 41.1 2.4 35 243-280 40-74 (216)
473 2lkc_A Translation initiation 55.7 5.8 0.0002 39.0 2.8 23 253-275 7-29 (178)
474 3lxx_A GTPase IMAP family memb 55.7 5.5 0.00019 42.1 2.8 22 254-275 29-50 (239)
475 3cob_A Kinesin heavy chain-lik 55.5 6.1 0.00021 45.3 3.3 21 251-271 77-97 (369)
476 2a9k_A RAS-related protein RAL 55.3 6.3 0.00021 39.0 3.0 21 255-275 19-39 (187)
477 1z0f_A RAB14, member RAS oncog 55.2 6.3 0.00022 38.6 3.0 21 255-275 16-36 (179)
478 1g16_A RAS-related protein SEC 55.2 5.7 0.00019 38.6 2.6 20 256-275 5-24 (170)
479 3pqc_A Probable GTP-binding pr 55.1 5.2 0.00018 40.0 2.4 19 256-274 25-43 (195)
480 2nzj_A GTP-binding protein REM 55.1 6 0.00021 38.7 2.8 20 256-275 6-25 (175)
481 1upt_A ARL1, ADP-ribosylation 55.0 6.5 0.00022 38.3 3.0 20 255-274 8-27 (171)
482 3hnw_A Uncharacterized protein 55.0 50 0.0017 32.4 9.3 44 959-1002 88-131 (138)
483 4dsu_A GTPase KRAS, isoform 2B 54.9 6.3 0.00022 39.1 3.0 20 256-275 6-25 (189)
484 1u0j_A DNA replication protein 54.9 13 0.00043 40.8 5.5 36 243-278 91-128 (267)
485 3con_A GTPase NRAS; structural 54.8 6.4 0.00022 39.4 3.0 21 255-275 22-42 (190)
486 1r2q_A RAS-related protein RAB 54.8 6.6 0.00022 38.0 3.0 20 256-275 8-27 (170)
487 2m0o_A PHD finger protein 1; t 54.7 68 0.0023 28.2 8.7 47 118-164 29-77 (79)
488 1r8s_A ADP-ribosylation factor 54.7 6.6 0.00023 38.0 3.0 19 257-275 3-21 (164)
489 3bc1_A RAS-related protein RAB 54.5 6.6 0.00022 39.0 3.0 21 255-275 12-32 (195)
490 4f4c_A Multidrug resistance pr 54.3 3.2 0.00011 55.6 0.8 26 253-278 1104-1129(1321)
491 2gj8_A MNME, tRNA modification 54.3 6.6 0.00022 39.1 3.0 22 254-275 4-25 (172)
492 1f9v_A Kinesin-like protein KA 54.3 7.6 0.00026 44.1 3.8 21 251-271 82-102 (347)
493 1wb9_A DNA mismatch repair pro 54.2 5.8 0.0002 50.2 3.1 25 252-276 605-629 (800)
494 3kkq_A RAS-related protein M-R 54.1 6.7 0.00023 38.9 3.0 21 255-275 19-39 (183)
495 1g41_A Heat shock protein HSLU 54.1 8.8 0.0003 45.1 4.4 25 254-278 50-74 (444)
496 3u59_A Tropomyosin beta chain; 54.0 1.3E+02 0.0046 27.6 12.3 82 954-1035 17-101 (101)
497 2heh_A KIF2C protein; kinesin, 54.0 8.4 0.00029 44.4 4.1 21 251-271 132-152 (387)
498 3ihw_A Centg3; RAS, centaurin, 54.0 6.6 0.00023 39.6 3.0 24 252-275 18-41 (184)
499 3j16_B RLI1P; ribosome recycli 53.9 5.8 0.0002 48.6 2.9 24 255-278 379-402 (608)
500 2fh5_B SR-beta, signal recogni 53.8 6.9 0.00024 40.1 3.1 29 248-276 1-29 (214)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=1.7e-214 Score=2042.13 Aligned_cols=822 Identities=42% Similarity=0.706 Sum_probs=751.9
Q ss_pred cccCcEEEEecCCCCEEeEEEEEe---cCCeeEEEcCCCcEEEEeC----CCccc-CCCCccCCccccccCCCCCchhHH
Q 001063 116 GKKKLQSWFQLPNGNWELGKILSI---SGTESVISLPEGKVLKVKS----ENLVS-ANPDILDGVDDLMQLSYLNEPSVL 187 (1167)
Q Consensus 116 ~~~~~~vw~~~~~~~~~~~~v~~~---~~~~~~v~~~~g~~~~v~~----~~~~~-~np~~~~~~~Dl~~L~~LnE~svL 187 (1167)
..++.+||+|||+++|..|+|++. +++.++|.+++|++++|+. +++.| +||+.++++|||+.|++|||++||
T Consensus 7 ~~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl 86 (1080)
T 2dfs_A 7 YTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVL 86 (1080)
T ss_dssp CCTTCEEEEEETTTEEEEEECSSCCCTTCSEEECCCSSSSCCEEECCTTTCCCCCBCCCGGGSSCSBSTTCSSCSHHHHH
T ss_pred cccCCEEEEECCCCceEEEEEEeeecCCCceEEEEECCCCEEEEecCCcccccccccCcccccchhhhhhhhhcchHHHH
Confidence 345679999999999999999973 3446788888998888876 45777 599999999999999999999999
Q ss_pred HHHHHHh-hcCcceeccCCceEecCCCCCCCCCcHHHHHHhhcCCCC--CCchhHHHHHHHHHHHhcCceEEEEEeCCCC
Q 001063 188 YNLHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESG 264 (1167)
Q Consensus 188 ~~L~~Ry-~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESG 264 (1167)
|||+.|| ..+.||||+|+||||||||+++|||+++++..|+++... ||||||||+.||++|+.+++|||||||||||
T Consensus 87 ~nL~~Ry~~~~~iYTy~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESG 166 (1080)
T 2dfs_A 87 HNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESG 166 (1080)
T ss_dssp HHHHHHHHTTCCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTT
T ss_pred HHHHHHHHhcCCchhccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCC
Confidence 9999999 999999999999999999999999999999999998764 8999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHccCCC---CcchhhhhhhHHHHhhcCcccCCCCCCCcccceEEEEEcCCCceeeeeeeeeeccc
Q 001063 265 AGKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEK 341 (1167)
Q Consensus 265 aGKTe~~K~il~yLa~~~~~~---~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEK 341 (1167)
|||||++|+||+|||++++++ .|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||+|.+|||||
T Consensus 167 AGKTe~~K~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEK 246 (1080)
T 2dfs_A 167 AGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEK 246 (1080)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCTTTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEEEEEEECCCC
T ss_pred CCccchHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeeecceeEeecC
Confidence 999999999999999998764 79999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccCCCccchhhHHHHcCCCHHHHhhccCCCccccccccCCCcccCCCcchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 001063 342 SRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421 (1167)
Q Consensus 342 sRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lg~s~~e~~~i~ 421 (1167)
||||.|++||||||||||||+|+++++++.|+|.++.+|+||++++|..++++||+++|..++.||++|||+++++..||
T Consensus 247 sRVv~q~~~ERnfHIFYqllag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~ 326 (1080)
T 2dfs_A 247 SRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIF 326 (1080)
T ss_dssp GGGTCCCTTCCSBHHHHHHHHTTTSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ceeeccCCCCCcchhHHHHHcCCChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeeeEeeCCCCccccCChhHHHHHHHhcCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHHHHHHHHH
Q 001063 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKS 501 (1167)
Q Consensus 422 ~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~aL~~~~i~~~~e~i~~~lt~~qA~~~rdalak~ 501 (1167)
+|||||||||||+|...+++....+.+++.++.||.||||++++|.++||++++.+++|.+++++|++||.++||||||+
T Consensus 327 ~ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~ 406 (1080)
T 2dfs_A 327 RILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKH 406 (1080)
T ss_dssp HHHHHHHHHTTCCCEEETTTEEECCSSCHHHHHHHHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCceEEecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999876653333347888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHHHHHhhHHHHHHHHHhhhHHHHHHHHhcCCcee
Q 001063 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 581 (1167)
Q Consensus 502 LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~ 581 (1167)
||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+
T Consensus 407 lY~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~ 485 (1080)
T 2dfs_A 407 IYANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWT 485 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHCCSS-CCCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHhhcccc-ccCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccc
Confidence 999999999999999998754 3468999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcHhHHHHhhcCCCccccccccccCCCCCCcHHHHHHHHHHh-CCCCCcccCC--CCceEEEeecceeeecccch
Q 001063 582 KVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGER--DKSFTVSHYAGEVIYDTTGF 658 (1167)
Q Consensus 582 ~v~f~dn~~~ldlie~~p~Gll~lLDee~~~p~~td~~f~~kl~~~~-~~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gf 658 (1167)
.|+|.||++|||||+++ .|||+||||||++|++||.+|++||+.+| ++|++|.+++ ...|+|+||||+|+|+++||
T Consensus 486 ~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gf 564 (1080)
T 2dfs_A 486 LIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGF 564 (1080)
T ss_dssp CCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTH
T ss_pred cccccccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhH
Confidence 99999999999999997 99999999999999999999999999988 9999998775 57999999999999999999
Q ss_pred hhhccCcCcHHHHHHHhhc-Ccch-hHHhhccccccC---CC---------CccCCCc--cCCCCCCCcccHHHHHHHHH
Q 001063 659 LEKNRDLLHLDSIELLSSC-SCHL-PQIFASNMLSQS---NK---------PVVGPLY--KAGGADSQKLSVATKFKGQL 722 (1167)
Q Consensus 659 leKNrD~l~~d~~~ll~~S-~~~l-~~lf~~~~~~~s---~~---------~~~~~~~--~~~~~~~~~~tv~~~f~~qL 722 (1167)
|+||+|+|++|++++|++| ++.+ ..+|.......+ .. ....|.+ .+++...+++||+++|+.||
T Consensus 565 leKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL 644 (1080)
T 2dfs_A 565 LEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSL 644 (1080)
T ss_dssp HHHHBCCCCHHHHHHHHTCSSCSHHHHSCC-------------------------------------CCCBHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHcccccHHHHHHhcccccccccccccccccccccccccccccccccccccCCCCcHHHHHHHHH
Confidence 9999999999999999999 8875 567754321100 00 0000000 00123445789999999999
Q ss_pred HHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCccChHHHHHHhhhhccccccCCCh
Q 001063 723 FQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDP 802 (1167)
Q Consensus 723 ~~Lm~~L~~t~phfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~ 802 (1167)
+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|+|||+|++|.+|+.||++|+|...+..|+
T Consensus 645 ~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~ 724 (1080)
T 2dfs_A 645 HLLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDR 724 (1080)
T ss_dssp HHHHHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCSSH
T ss_pred HHHHHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHhhcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976655599
Q ss_pred HHHHHHHHHHcCcCCcceeeCceeeeeeeccccccccccccccc-chhhhhhhhccchhhhhhhhhchhhhhHHHHHHhH
Q 001063 803 LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGE 881 (1167)
Q Consensus 803 ~~~~~~il~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~-aav~IQ~~~Rg~~aR~~y~~lr~aai~IQs~~Rg~ 881 (1167)
++.|+.||..++++++.|++|+||||||.+.++.||+.|...+. +++.||++||||++|++|++++.+++.||++|||+
T Consensus 725 k~~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~ 804 (1080)
T 2dfs_A 725 KQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGH 804 (1080)
T ss_dssp HHHHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhhheeccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhHHHHHHHHHhh
Q 001063 882 KIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDIC 940 (1167)
Q Consensus 882 ~aRr~y~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~aai~iQs~~Rg~laRr~~~~lr 940 (1167)
++|+.|..++ +.+||++||++||||.+|+.|..++.+++.||+.|||+++|+.+..++
T Consensus 805 ~aR~~~~~lr-~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr 862 (1080)
T 2dfs_A 805 QARCYATFLR-RTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMML 862 (1080)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccc-cchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997754 678999999999999999999999999999999999999998887654
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=3e-207 Score=1919.28 Aligned_cols=790 Identities=40% Similarity=0.697 Sum_probs=711.0
Q ss_pred ccCCC-CCCccccCCcccccccccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEcC-CCcEEEEeCCCcccCCCCcc
Q 001063 92 AASPL-PSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLP-EGKVLKVKSENLVSANPDIL 169 (1167)
Q Consensus 92 ~~~~~-p~~~~~~~~~~w~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~-~g~~~~v~~~~~~~~np~~~ 169 (1167)
+..|. |++..+..+..-.++.+|..++ +||+++++++|..|+|++..+++++|.+. +|++++|+.+++.|+||+.+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~~ 82 (837)
T 1kk8_A 5 FSDPDFQYLAVDRKKLMKEQTAAFDGKK--NCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKF 82 (837)
T ss_dssp CSCGGGTTTCCCSSSSCC--CCCCCTTT--EEEEEETTTEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCGGG
T ss_pred cccchhhhhhcCHHHHHHhhhcccccCC--EEEEECCCCCeeEEEEEeecCCeEEEEEcCCCceEEeeHHHccccCchhh
Confidence 34555 6777766666666777887776 89999999999999999999999999964 78899999999999999999
Q ss_pred CCccccccCCCCCchhHHHHHHHHhhcCcceeccCCceEecCCCCCCCCCcHHHHHHhhcCCCC--CCchhHHHHHHHHH
Q 001063 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247 (1167)
Q Consensus 170 ~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~ 247 (1167)
+++|||+.|++|||++|||||+.||..+.||||+|++|||||||+++|||+++++..|+++... ||||||||+.||++
T Consensus 83 ~~~~Dl~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~ 162 (837)
T 1kk8_A 83 EKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQN 162 (837)
T ss_dssp TTCSBGGGSSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhcccHHHHHHHHHHHHhcCCceeeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998765 89999999999999
Q ss_pred HHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHccCC-------------CCcchhhhhhhHHHHhhcCcccCCCCCCCc
Q 001063 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG-------------SGIEYEILKTNPILEAFGNAKTSRNDNSSR 314 (1167)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~-------------~~i~~~il~snpiLEAFGNAkT~~N~NSSR 314 (1167)
|+++++||||||||||||||||++|+||+|||+++++ +.|+++|+++||||||||||||++||||||
T Consensus 163 m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSR 242 (837)
T 1kk8_A 163 MVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSR 242 (837)
T ss_dssp HHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEES
T ss_pred HHhcCCCcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCC
Confidence 9999999999999999999999999999999999863 257899999999999999999999999999
Q ss_pred ccceEEEEEcCCCceeeeeeeeeeccceeeeeccCCCccchhhHHHHcCCCHHHHhhccC-CCccccccccCCCcccCCC
Q 001063 315 FGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNL-MSAKEYKYLRQSSCYSING 393 (1167)
Q Consensus 315 FGK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L-~~~~~y~yL~~~~~~~~~~ 393 (1167)
|||||+|+||.+|.|+||+|++|||||||||.|++||||||||||||+|+++++++.|+| .++.+|+||+++. ..+++
T Consensus 243 FGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL~~g~-~~~~~ 321 (837)
T 1kk8_A 243 FGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGC-LTVDN 321 (837)
T ss_dssp SEEEEEEEECTTSSEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSC-SCBTT
T ss_pred ceeEEEEEECCCCCEeeeEEEEEeccCceeeeecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccccCCC-cccCC
Confidence 999999999999999999999999999999999999999999999999999999999999 7899999999975 68899
Q ss_pred cchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEeeCCCCccccCChhHHHHHHHhcCCCHHHHHHhHccc
Q 001063 394 VDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTR 473 (1167)
Q Consensus 394 ~dD~~~f~~l~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~aL~~~ 473 (1167)
+||+++|+.++.||++|||+++|+..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++||++
T Consensus 322 ~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~ 401 (837)
T 1kk8_A 322 IDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKP 401 (837)
T ss_dssp BCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSC
T ss_pred cChHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHHHHHHHHHHCCCHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999998766677889999999999999999999999999999
Q ss_pred eeeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHHHHHh
Q 001063 474 KMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYA 553 (1167)
Q Consensus 474 ~i~~~~e~i~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINya 553 (1167)
++.+|+|.+++++|++||.++||||||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||
T Consensus 402 ~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlcINya 480 (837)
T 1kk8_A 402 KVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFDFNSFEQLCINYT 480 (837)
T ss_dssp EEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCSSBCHHHHHHHHH
T ss_pred EEEcCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCcceEEEEecCCccccccccHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999843 3456899999999999999999999999999
Q ss_pred hHHHHHHHHHhhhHHHHHHHHhcCCceeecccC-CcHhHHHHhhcCCCccccccccccCCCCCCcHHHHHHH-HHHhCCC
Q 001063 554 NERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKL-KQHLNSN 631 (1167)
Q Consensus 554 NEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~-dn~~~ldlie~~p~Gll~lLDee~~~p~~td~~f~~kl-~~~~~~~ 631 (1167)
||+|||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||++ |.|||+||||||++|++||.+|++|| .+++++|
T Consensus 481 NEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~kl~~~~~~~~ 559 (837)
T 1kk8_A 481 NERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQDKLYQNHMGKN 559 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999995 99999999997 89999999999999999999999996 5678899
Q ss_pred CCcccCC--------CCceEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCc
Q 001063 632 PCFRGER--------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLY 702 (1167)
Q Consensus 632 ~~f~~~~--------~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~ 702 (1167)
++|.+++ ..+|+|+||||+|+|+++|||+||+|+|++|++++|++|++.+ ..+|..... .++ .+ .
T Consensus 560 ~~f~~p~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~-~~g---~~--~ 633 (837)
T 1kk8_A 560 RMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEE-PAG---GG--K 633 (837)
T ss_dssp SSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC---------------
T ss_pred cCccCCCccccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHhchHHHHHHHhccccc-ccC---CC--C
Confidence 9997654 5689999999999999999999999999999999999999875 568864321 000 01 0
Q ss_pred cCCCCCCCcccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCccCh
Q 001063 703 KAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSH 782 (1167)
Q Consensus 703 ~~~~~~~~~~tv~~~f~~qL~~Lm~~L~~t~phfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~ 782 (1167)
+..+......||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|
T Consensus 634 ~~k~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~f 713 (837)
T 1kk8_A 634 KKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIY 713 (837)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCCSCEEEEH
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHccCCeeeeeeCCCccCCcccccchheeeeccccCccHHHHHHHHhccccccH
Confidence 11111234689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccccC--CChHHHHHHHHHHcCcCCcceeeCceeeeeeecccccccccccccccchhhhhhhhccchh
Q 001063 783 QKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQA 860 (1167)
Q Consensus 783 ~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aav~IQ~~~Rg~~a 860 (1167)
.+|+.||++|.+...+. .|+++.|+.||..++++++.|++|+||||||+++++.||+.|...+.
T Consensus 714 ~eF~~RY~~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~-------------- 779 (837)
T 1kk8_A 714 SEFKQRYSILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLS-------------- 779 (837)
T ss_dssp HHHHHHHGGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHH--------------
Confidence 99999999999987653 48999999999999999999999999999999999999998875543
Q ss_pred hhhhhhhchhhhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 001063 861 RLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLK 914 (1167)
Q Consensus 861 R~~y~~lr~aai~IQs~~Rg~~aRr~y~~l~~~~~AAi~IQ~~~R~~~~Rr~y~ 914 (1167)
..++.||++|||+++|++|.+++.++.|+++||++||+|++|+.|.
T Consensus 780 --------~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 780 --------KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 3467888888999999999888777889999999999998877643
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=2.6e-203 Score=1978.19 Aligned_cols=777 Identities=38% Similarity=0.645 Sum_probs=710.7
Q ss_pred ccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEc-CCCcEEEEeCCCcccCCCCccCCccccccCCCCCchhHHHHHH
Q 001063 113 SYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLH 191 (1167)
Q Consensus 113 ~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~-~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~ 191 (1167)
+|..++ +||+++++++|.+|+|++..++.++|.+ ++|++++|+.+++.|+||+.+++++||+.|++|||++|||||+
T Consensus 27 ~~~~~~--~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~~~n~~~~~~~~Dl~~l~~l~e~~vl~~L~ 104 (1184)
T 1i84_S 27 DWSAKK--LVWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLR 104 (1184)
T ss_dssp HTTCTT--EEEECCTTTSSEEEEEEEEETTEEEEEETTTCCEEEEETTSCEECCCGGGTTCSBTTSSSCCCTTHHHHHHH
T ss_pred CcccCC--eEEEECCCCCeEEEEEEEecCCeEEEEEcCCCcEEEeeHHHccCCCCccccccchhhhhccccHHHHHHHHH
Confidence 555554 9999999999999999999999999985 5888999999999999999999999999999999999999999
Q ss_pred HHhhcCcceeccCCceEecCCCCCCCCCcHHHHHHhhcCCCC--CCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhh
Q 001063 192 YRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTE 269 (1167)
Q Consensus 192 ~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe 269 (1167)
.||..+.||||+|+||||||||+++|||+++++..|+++... ||||||||+.||++|+.+++||||||||||||||||
T Consensus 105 ~Ry~~~~iyT~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe 184 (1184)
T 1i84_S 105 ERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTE 184 (1184)
T ss_dssp HHHHHTCCEEEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTH
T ss_pred HHhcCCCcEEecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccH
Confidence 999999999999999999999999999999999999998765 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCC-----------------CCcchhhhhhhHHHHhhcCcccCCCCCCCcccceEEEEEcCCCceeee
Q 001063 270 TAKIAMQYLAALGGG-----------------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGA 332 (1167)
Q Consensus 270 ~~K~il~yLa~~~~~-----------------~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga 332 (1167)
++|+||+|||+++++ +.|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||
T Consensus 185 ~~k~~~~yla~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~f~~~g~i~ga 264 (1184)
T 1i84_S 185 NTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGA 264 (1184)
T ss_dssp HHHHHHHHHHHHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCCccccccceeEEEEECCCCCEeee
Confidence 999999999999865 367899999999999999999999999999999999999999999999
Q ss_pred eeeeeeccceeeeeccCCCccchhhHHHHcCCCHHHHhhccCCCccccccccCCCcccCCCcchHHHHHHHHHHHhhcCC
Q 001063 333 NIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHV 412 (1167)
Q Consensus 333 ~i~~yLLEKsRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lg~ 412 (1167)
+|.+|||||||||.|++||||||||||||+|+++++++.|+|.++.+|+||+++. ..++++||+++|..++.||++|||
T Consensus 265 ~i~~ylLEksRv~~q~~~ErnfhiFYqll~g~~~~~~~~l~l~~~~~~~yl~~~~-~~~~~~~d~~~f~~~~~a~~~lg~ 343 (1184)
T 1i84_S 265 NIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMFQETLEAMTIMGF 343 (1184)
T ss_dssp EEEECCCCCGGGSCCCTTCCCCTHHHHHHHHCCHHHHHHTTCCCTTSCSSCTTSS-CCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEeEeecCCceeeeecCCCCchhhHHHHHcCCCHHHHHHcCCCChHhCCccCCCC-cCCCCCChHHHHHHHHHHHHhcee
Confidence 9999999999999999999999999999999999999999999999999999874 589999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCeeeEeeCCCCccccCChhHHHHHHHhcCCCHHHHHHhHccceeeeCCceEEecCCHHHHH
Q 001063 413 SKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQAT 492 (1167)
Q Consensus 413 s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~aL~~~~i~~~~e~i~~~lt~~qA~ 492 (1167)
+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+|++.+++++|++||.
T Consensus 344 ~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~a~lLg~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~ 423 (1184)
T 1i84_S 344 TEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQAD 423 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHHHHHTTSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEeCCceEecCCCHHHHH
Confidence 99999999999999999999999877666778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHHHHHhhHHHHHHHHHhhhHHHHHH
Q 001063 493 DTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEE 572 (1167)
Q Consensus 493 ~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~e 572 (1167)
++||||||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+|
T Consensus 424 ~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~e 503 (1184)
T 1i84_S 424 FAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEE 503 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999865334568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceeecccC-CcHhHHHHhhcC--CCccccccccccCCCCCCcHHHHHHHHHHhCCCCCcccCC----CCceEEE
Q 001063 573 YIQDGIDWAKVDFE-DNKDCLNLFEKK--PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER----DKSFTVS 645 (1167)
Q Consensus 573 y~~EgI~~~~v~f~-dn~~~ldlie~~--p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~----~~~F~I~ 645 (1167)
|.+|||+|+.|+|. ||++|||||+++ |.|||+||||||++|++||.+|++||+++|++||+|.+++ ..+|+|+
T Consensus 504 y~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~ 583 (1184)
T 1i84_S 504 YQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCIL 583 (1184)
T ss_dssp HHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEE
T ss_pred HHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHHHHHHHHHhCCCCCccCCCCCCCCCcEEEE
Confidence 99999999999995 999999999973 3499999999999999999999999999999999998764 4799999
Q ss_pred eecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCC-cc----CCCCCCCcccHHHHHH
Q 001063 646 HYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPL-YK----AGGADSQKLSVATKFK 719 (1167)
Q Consensus 646 HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~-~~----~~~~~~~~~tv~~~f~ 719 (1167)
||||+|+|+++|||+||+|+|+++++.+|.+|++.+ ..+|.......+.....++. .. +....+.+.||+++|+
T Consensus 584 Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~ 663 (1184)
T 1i84_S 584 HYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYK 663 (1184)
T ss_dssp CSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHHHSCCTTCCCC---------------------CCCHHHHHH
T ss_pred CCCceEEeccCCchhhccCcccHHHHHHHHhCchHHHHHHhccccccccccccccccccccCccccccCCCCCcHHHHHH
Confidence 999999999999999999999999999999999875 56886532111100000000 00 0112234589999999
Q ss_pred HHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCccChHHHHHHhhhhccccccC
Q 001063 720 GQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS 799 (1167)
Q Consensus 720 ~qL~~Lm~~L~~t~phfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~ 799 (1167)
.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|.|...+.
T Consensus 664 ~~l~~L~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~ry~~L~~~~~~~ 743 (1184)
T 1i84_S 664 EQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPK 743 (1184)
T ss_dssp HHHHHHHHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHTTTTCTTTSCS
T ss_pred HHHHHHHHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhhcCchHHHHhHhhcCcccccHHHHHHHHHHhccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876653
Q ss_pred --CChHHHHHHHHHHcCcCCcceeeCceeeeeeecccccccccccccccchhhhhhhhccchhhhhhhhhchhhhhHHHH
Q 001063 800 --QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSF 877 (1167)
Q Consensus 800 --~d~~~~~~~il~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aav~IQ~~~Rg~~aR~~y~~lr~aai~IQs~ 877 (1167)
.|++..|..||..++++++.|+||+||||||.+.+..||..|...+ ...++.||++
T Consensus 744 ~~~d~k~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~r~~~l----------------------~~~~~~iQ~~ 801 (1184)
T 1i84_S 744 GFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKI----------------------TDVIIAFQAQ 801 (1184)
T ss_dssp SCCCHHHHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHHHHHHT----------------------HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHHHHHHH----------------------HHHHHHHHHH
Confidence 4889999999999999999999999999999999999998877543 3457888889
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 001063 878 IRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLK 914 (1167)
Q Consensus 878 ~Rg~~aRr~y~~l~~~~~AAi~IQ~~~R~~~~Rr~y~ 914 (1167)
||||++|++|.+++.++.|+++||++||+|+.|+.|.
T Consensus 802 ~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 802 CRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999888777889999999999999987643
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=3.7e-203 Score=1873.90 Aligned_cols=752 Identities=44% Similarity=0.730 Sum_probs=680.8
Q ss_pred ccCcEEEEecCCCCEEeEEEEEe---cCCeeEEEcCCCcEEEEeC----CCccc-CCCCccCCccccccCCCCCchhHHH
Q 001063 117 KKKLQSWFQLPNGNWELGKILSI---SGTESVISLPEGKVLKVKS----ENLVS-ANPDILDGVDDLMQLSYLNEPSVLY 188 (1167)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~---~~~~~~v~~~~g~~~~v~~----~~~~~-~np~~~~~~~Dl~~L~~LnE~svL~ 188 (1167)
.++.+||++++++.|..|+|++. .++.++|.+++|++++|+. +++.| +||+.++++|||+.|++|||++|||
T Consensus 8 ~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~v~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~E~svL~ 87 (795)
T 1w7j_A 8 TKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLH 87 (795)
T ss_dssp CTTCEEEEEETTTEEEEEEESSCCCTTCSEEEEECSSSSEEEEECCTTTTCCCCBCCCGGGTTCSSSTTCSCCSHHHHHH
T ss_pred ccCCEEEEECCCCceEEEEEEeeccCCCceEEEEECCCCEEEEeccCcccccccccCcchhccccchhhhhcccHHHHHH
Confidence 34669999999999999999973 3456899999999999887 45777 5999999999999999999999999
Q ss_pred HHHHHh-hcCcceeccCCceEecCCCCCCCCCcHHHHHHhhcCCCC--CCchhHHHHHHHHHHHhcCceEEEEEeCCCCC
Q 001063 189 NLHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGA 265 (1167)
Q Consensus 189 ~L~~Ry-~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGa 265 (1167)
||+.|| .++.||||+|++|||||||+++|||+++++..|+++... ||||||||+.||++|+++++||||||||||||
T Consensus 88 nL~~Ry~~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGA 167 (795)
T 1w7j_A 88 NLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGA 167 (795)
T ss_dssp HHHHHHHHHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTS
T ss_pred HHHHHHHhcccchhccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCC
Confidence 999999 999999999999999999999999999999999998764 89999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHccCCC---CcchhhhhhhHHHHhhcCcccCCCCCCCcccceEEEEEcCCCceeeeeeeeeeccce
Q 001063 266 GKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342 (1167)
Q Consensus 266 GKTe~~K~il~yLa~~~~~~---~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKs 342 (1167)
||||++|+||+|||++++++ .|+++|+++||||||||||||++|||||||||||+|+||.+|+|+||+|++||||||
T Consensus 168 GKTe~tK~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKS 247 (795)
T 1w7j_A 168 GKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKS 247 (795)
T ss_dssp SHHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGG
T ss_pred CcchHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceEEecccc
Confidence 99999999999999998764 799999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCccchhhHHHHcCCCHHHHhhccCCCccccccccCCCcccCCCcchHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001063 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFA 422 (1167)
Q Consensus 343 RVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lg~s~~e~~~i~~ 422 (1167)
|||.|++||||||||||||+|+++++++.|+|.++.+|+||++++|..++++||+++|+.++.||++|||+++|+..||+
T Consensus 248 RVv~q~~gERNfHIFYqLlag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ 327 (795)
T 1w7j_A 248 RVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFR 327 (795)
T ss_dssp GGTCCCTTCCSBHHHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eEeccCCCCCchHhHHHHHcCCCHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeeeEeeCCCCccccCChhHHHHHHHhcCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHHHHHHHHHH
Q 001063 423 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI 502 (1167)
Q Consensus 423 iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~aL~~~~i~~~~e~i~~~lt~~qA~~~rdalak~L 502 (1167)
|||||||||||+|...+++......+.+.++.||.||||++++|.++|++|++.+++|.+++++|++||.++||||||+|
T Consensus 328 ilaaILhLGNi~F~~~~~~~~~v~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~l 407 (795)
T 1w7j_A 328 ILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHI 407 (795)
T ss_dssp HHHHHHHHHTCCCEEEETTEEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCceEeecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998765533333367889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHHHHHhhHHHHHHHHHhhhHHHHHHHHhcCCceee
Q 001063 503 YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 582 (1167)
Q Consensus 503 Y~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~ 582 (1167)
|++||+|||.+||.+|.... ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.
T Consensus 408 Y~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~ 486 (795)
T 1w7j_A 408 YANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTL 486 (795)
T ss_dssp HHHHHHHHHHHHHHHHCCSS-CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHhhcCCc-cccceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 99999999999999998754 34689999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHhHHHHhhcCCCccccccccccCCCCCCcHHHHHHHHHHh-CCCCCcccCC--CCceEEEeecceeeecccchh
Q 001063 583 VDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGER--DKSFTVSHYAGEVIYDTTGFL 659 (1167)
Q Consensus 583 v~f~dn~~~ldlie~~p~Gll~lLDee~~~p~~td~~f~~kl~~~~-~~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gfl 659 (1167)
|+|.||++|||||+++ .|||+||||||++|++||.+|++||+++| ++|++|.+++ ...|+|+||||+|+|+++|||
T Consensus 487 i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfl 565 (795)
T 1w7j_A 487 IDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFL 565 (795)
T ss_dssp CCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHH
T ss_pred cCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhHH
Confidence 9999999999999997 99999999999999999999999999988 9999998875 679999999999999999999
Q ss_pred hhccCcCcHHHHHHHhhcC-cch-hHHhhccccccC-C--C---------CccCCCc--cCCCCCCCcccHHHHHHHHHH
Q 001063 660 EKNRDLLHLDSIELLSSCS-CHL-PQIFASNMLSQS-N--K---------PVVGPLY--KAGGADSQKLSVATKFKGQLF 723 (1167)
Q Consensus 660 eKNrD~l~~d~~~ll~~S~-~~l-~~lf~~~~~~~s-~--~---------~~~~~~~--~~~~~~~~~~tv~~~f~~qL~ 723 (1167)
+||+|+|++|++++|++|+ +.+ ..+|.......+ . . ....+.+ ..++...+++||+++||.||+
T Consensus 566 eKNkD~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~ 645 (795)
T 1w7j_A 566 EKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLH 645 (795)
T ss_dssp HHHHCCCCHHHHHHHHTCSSCSHHHHTTC---------------------------------------CCHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHhccccHHHHHHhccccccccccccccccccccccccccccccccccccCCCCCcHHHHHHHHHH
Confidence 9999999999999999999 875 567854321100 0 0 0000000 001223456899999999999
Q ss_pred HHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCccChHHHHHHhhhhccccccCCChH
Q 001063 724 QLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPL 803 (1167)
Q Consensus 724 ~Lm~~L~~t~phfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~ 803 (1167)
.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|++......|++
T Consensus 646 ~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~k 725 (795)
T 1w7j_A 646 LLMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRK 725 (795)
T ss_dssp HHHHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCSCHH
T ss_pred HHHHHHhcCCCeEEEEeCCCCcCChhhcCcccccchhhhCChHHHHHHHHcCCCccccHHHHHHHHHHhCCcccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999766555999
Q ss_pred HHHHHHHHHcCcCCcceeeCceeeeeeecccccccccccccccc-hhhhhhhhccchhhhhhhhhchh
Q 001063 804 SVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHG-ILRVQSCFRGHQARLCLKELRRG 870 (1167)
Q Consensus 804 ~~~~~il~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~a-av~IQ~~~Rg~~aR~~y~~lr~a 870 (1167)
+.|+.||..+++++++|++|+||||||+++++.||+.|...+.. ++.||++||||++|++|+++|.+
T Consensus 726 ~~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQ~~~Rg~l~R~~~~~~r~a 793 (795)
T 1w7j_A 726 QTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRG 793 (795)
T ss_dssp HHHHHHHHHHCCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCccceEEcCceEEEchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998876543 44555555555555555555543
No 5
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.6e-202 Score=1859.97 Aligned_cols=754 Identities=39% Similarity=0.667 Sum_probs=670.0
Q ss_pred CCCCcCcccCCCCCCccccCCcccccccccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCcccC
Q 001063 85 GDEDLDSAASPLPSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSA 164 (1167)
Q Consensus 85 ~~~~~~~~~~~~p~~~~~~~~~~w~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~ 164 (1167)
+|.+|+....|.|++..+..+..-.++.+|..++ +||+++|+++|..|+|++..+++++|.+++|++++|+.+++.|+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~vWv~d~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~ 79 (783)
T 4db1_A 2 GDSEMAVFGAAAPYLRKSEKERLEAQTRPFDLKK--DVFVPDDKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQ 79 (783)
T ss_dssp TTGGGGGGGGGGGGTCCCHHHHHHHHHSCCCTTT--EEEEECSSSSEEEEEEEEECSSEEEEEETTTEEEEEEGGGCEEC
T ss_pred CCcchhhcCchhhHhccCHHHHHHhhccCCcCCC--EEEEECCCCCEEEEEEEEecCCEEEEEECCCCEEeCCHHHcccC
Confidence 4788999999999999987777778899999887 99999999999999999999999999999999999999999999
Q ss_pred CCCccCCccccccCCCCCchhHHHHHHHHhhcCcceeccCCceEecCCCCCCCCCcHHHHHHhhcCCCC--CCchhHHHH
Q 001063 165 NPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITD 242 (1167)
Q Consensus 165 np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~ 242 (1167)
||+.++++|||+.|++|||++|||||+.||.++.||||+|+||||||||+++|||+++++.+|+++... ||||||||+
T Consensus 80 np~~~~~~eDl~~L~~LnE~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~ 159 (783)
T 4db1_A 80 NPPKFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISD 159 (783)
T ss_dssp CCGGGTTCSBGGGCSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHH
T ss_pred CCCccCCcchhhccccccHHHHHHHHHHHhcCCceEEecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988754 899999999
Q ss_pred HHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHccCC------------CCcchhhhhhhHHHHhhcCcccCCCC
Q 001063 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG------------SGIEYEILKTNPILEAFGNAKTSRND 310 (1167)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~------------~~i~~~il~snpiLEAFGNAkT~~N~ 310 (1167)
.||++|+++++||||||||||||||||++|+||+|||+++++ +.|+++|+++||||||||||||+|||
T Consensus 160 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNd 239 (783)
T 4db1_A 160 NAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRND 239 (783)
T ss_dssp HHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCT
T ss_pred HHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCC
Confidence 999999999999999999999999999999999999998753 35899999999999999999999999
Q ss_pred CCCcccceEEEEEcCCCceeeeeeeeeeccceeeeeccCCCccchhhHHHHcCCCHHHHhhccCC-CccccccccCCCcc
Q 001063 311 NSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLM-SAKEYKYLRQSSCY 389 (1167)
Q Consensus 311 NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~-~~~~y~yL~~~~~~ 389 (1167)
|||||||||+|+||.+|+|+||+|++|||||||||.|++||||||||||||+|+++++|+.|+|. ++.+|+||+++ +.
T Consensus 240 NSSRFGK~i~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yl~~g-~~ 318 (783)
T 4db1_A 240 NSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQG-ET 318 (783)
T ss_dssp TEECSEEEEEEEECTTSBEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHTCSSHHHHHHTTCCSCGGGCGGGCSS-CC
T ss_pred CCCccceeEEEEECCCCCEeeeEEEEeecccceeeccCCCCCcchhHHHHHcCCCHHHHHHhccCCCHHHCccccCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999994 79999999996 46
Q ss_pred cCCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEeeCCCCccccCChhHHHHHHHhcCCCHHHHHHh
Q 001063 390 SINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLA 469 (1167)
Q Consensus 390 ~~~~~dD~~~f~~l~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~a 469 (1167)
.++++||+++|+.++.||++|||+++++..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++
T Consensus 319 ~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~a 398 (783)
T 4db1_A 319 TVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKG 398 (783)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHHHHHHHhCCCHHHHHHh
Confidence 89999999999999999999999999999999999999999999999877777888999999999999999999999999
Q ss_pred HccceeeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHH
Q 001063 470 LSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFC 549 (1167)
Q Consensus 470 L~~~~i~~~~e~i~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLc 549 (1167)
||++++.+|+|.+++++|++||.++||||||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||
T Consensus 399 L~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlC 477 (783)
T 4db1_A 399 LCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETK-QPRQYFIGVLDIAGFEIFDFNSFEQLC 477 (783)
T ss_dssp HHSCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CCCSEEEEEEECCCCCCCSSCCHHHHH
T ss_pred hcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCceEEEeccccccccccCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999864 344689999999999999999999999
Q ss_pred HHHhhHHHHHHHHHhhhHHHHHHHHhcCCceeecccC-CcHhHHHHhhcCCCccccccccccCCCCCCcHHHHHHHHHHh
Q 001063 550 INYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHL 628 (1167)
Q Consensus 550 INyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~-dn~~~ldlie~~p~Gll~lLDee~~~p~~td~~f~~kl~~~~ 628 (1167)
||||||||||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||++ |.|||+||||||++|++||.+|++||++.|
T Consensus 478 INyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~kl~~~~ 556 (783)
T 4db1_A 478 INFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKAKLFDNH 556 (783)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999995 99999999996 899999999999999999999999998765
Q ss_pred -CCCCCcccCC------CCceEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCC
Q 001063 629 -NSNPCFRGER------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGP 700 (1167)
Q Consensus 629 -~~~~~f~~~~------~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~ 700 (1167)
++|++|.+++ ...|+|+||||+|+|+++|||+||+|+|++|++++|++|++.+ ..+|.......+ +. ++
T Consensus 557 ~~~~~~f~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~--~~-~~ 633 (783)
T 4db1_A 557 LGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADA--PI-EK 633 (783)
T ss_dssp TTTCTTEECCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHHHSCC-----------
T ss_pred cCCCCCccCCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccHHHHHHHHHCccHHHHHHhhccccccc--cc-cC
Confidence 8899997664 3689999999999999999999999999999999999999875 578865431111 00 00
Q ss_pred CccCCCCCCCcccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCcc
Q 001063 701 LYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRM 780 (1167)
Q Consensus 701 ~~~~~~~~~~~~tv~~~f~~qL~~Lm~~L~~t~phfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~ 780 (1167)
........+.++||+++||.||+.||++|++|+||||||||||+.|.|+.||..+|++||||+||||+|||+|+|||+|+
T Consensus 634 ~~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~ 713 (783)
T 4db1_A 634 GKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRI 713 (783)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHHTSCCEEE
T ss_pred ccCCCCcCCCCccHHHHHHHHHHHHHHHHHccCCEEEEeeCCCcccCCCcccchhhheeccccChHhheeehhcCCCccC
Confidence 00000112345899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhhhccccccC---CChHHHHHHHHHHcCcCCcceeeCceeeeeeeccccccccccccccc
Q 001063 781 SHQKFARRYGFLLLESVAS---QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH 846 (1167)
Q Consensus 781 ~~~eF~~RY~~L~~~~~~~---~d~~~~~~~il~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~ 846 (1167)
+|.+|++||++|.+..++. .|+++.|+.||..++++++.|++|+||||||+++++.||+.|+..+.
T Consensus 714 ~f~eF~~RY~~L~~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~~l~ 782 (783)
T 4db1_A 714 LYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLS 782 (783)
T ss_dssp EC--------------------------CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC-----
T ss_pred cHHHHHHHHHHhCccccCCCCCCCHHHHHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHHHhc
Confidence 9999999999999987653 37899999999999999999999999999999999999999987653
No 6
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=2e-202 Score=1904.86 Aligned_cols=798 Identities=34% Similarity=0.573 Sum_probs=708.8
Q ss_pred cCcEEEEecCCCCEEeEEEEEecCCeeEEEcC--CCcEEEEeCCCcccCCCCccCCccccccCCCCCchhHHHHHHHHhh
Q 001063 118 KKLQSWFQLPNGNWELGKILSISGTESVISLP--EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYK 195 (1167)
Q Consensus 118 ~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~ 195 (1167)
+|.+||++|++++|.+|+|++..++.++|.+. +|++++++.+++.|+||+.++++|||+.|++|||++|||||+.||.
T Consensus 3 ~G~~VWv~d~~~~~~~a~v~~~~~~~~~v~~~~~~g~~~~~~~~~v~~~n~~~~~~veDl~~L~~LnE~svL~nL~~Ry~ 82 (1052)
T 4anj_A 3 DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYS 82 (1052)
T ss_dssp -CCCEEEEETTTEEEEEEEEEECSSEEEEEEC----CCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEEEEcCCcEEEEEeCCCCcEEEecHHHcCCCCCCccCCCcccccCCCCCHHHHHHHHHHHHc
Confidence 46789999999999999999999999888754 6889999999999999999999999999999999999999999999
Q ss_pred cCcceeccCCceEecCCCCCCC-CCcHHHHHHhhcCCCC--CCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHH
Q 001063 196 QDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAK 272 (1167)
Q Consensus 196 ~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 272 (1167)
++.||||+|++|||||||+.+| ||++++++.|+++... ||||||||+.||+.|+++++||||||||||||||||++|
T Consensus 83 ~~~IYTy~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK 162 (1052)
T 4anj_A 83 KDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 162 (1052)
T ss_dssp TTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred CCCcEEeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHH
Confidence 9999999999999999999998 9999999999998765 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCC-CcchhhhhhhHHHHhhcCcccCCCCCCCcccceEEEEEcCCCceeeeeeeeeeccceeeeeccCCC
Q 001063 273 IAMQYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGE 351 (1167)
Q Consensus 273 ~il~yLa~~~~~~-~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gE 351 (1167)
+||+|||++++++ .++++|+++||||||||||||++|||||||||||+|+||.+|+|+||+|++|||||||||.|++||
T Consensus 163 ~im~yLa~~~~~~~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YLLEKSRVv~q~~gE 242 (1052)
T 4anj_A 163 FVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEE 242 (1052)
T ss_dssp HHHHHHHHHHCC---CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCSGGGTCCCTTC
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccccccCceeecCCCC
Confidence 9999999987754 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHcCCCHHHHhhccCCCccccccccCC--------------------------CcccCCCcchHHHHHHHHH
Q 001063 352 RAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQS--------------------------SCYSINGVDDAEQFRIVVE 405 (1167)
Q Consensus 352 RnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~--------------------------~~~~~~~~dD~~~f~~l~~ 405 (1167)
||||||||||+|++++++++|+|.++++|+||+++ +|..++++||+++|..++.
T Consensus 243 RNfHIFYqLlaGa~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~ 322 (1052)
T 4anj_A 243 RNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCT 322 (1052)
T ss_dssp CSBHHHHHHHHHCCHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHH
T ss_pred CCcccHHHHhcCCCHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999985 4667899999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEeeCCCC---ccccCChhHHHHHHHhcCCCHHHHHHhHccceee-----e
Q 001063 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEPVADEGLITVAKLIGCDIGELKLALSTRKMR-----V 477 (1167)
Q Consensus 406 Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~---~~~~~~~~~l~~aa~LLgv~~~~L~~aL~~~~i~-----~ 477 (1167)
||++|||+++|+..||+|||||||||||+|...++.+ .+.+.+.+.++.||.||||++++|.++||++++. +
T Consensus 323 Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~ 402 (1052)
T 4anj_A 323 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGA 402 (1052)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC--------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeeccccc
Confidence 9999999999999999999999999999998654322 3455667889999999999999999999998874 6
Q ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHHHHHhhHHH
Q 001063 478 GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (1167)
Q Consensus 478 ~~e~i~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNEkL 557 (1167)
++|.++++++++||.++||||||+||++||+|||++||.+|... ....+||||||||||+|+.|||||||||||||+|
T Consensus 403 ~~e~i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~--~~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkL 480 (1052)
T 4anj_A 403 KGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKL 480 (1052)
T ss_dssp -----CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHH
T ss_pred CceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cccceEEEEecCCCcccccCcHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999864 3467999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHhcCCceeecccCCcHhHHHHhhcCCCccccccccccCCCCCCcHHHHHHHHHHhCCCCCcccC
Q 001063 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE 637 (1167)
Q Consensus 558 Q~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldlie~~p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~ 637 (1167)
||+||+|+|+.||+||.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||.+|++||++.+++|++|..+
T Consensus 481 Qq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~~ 560 (1052)
T 4anj_A 481 QQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIP 560 (1052)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHTTTTCTTEECG
T ss_pred HHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHHHHhccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988643
Q ss_pred C------------CCceEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccC
Q 001063 638 R------------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKA 704 (1167)
Q Consensus 638 ~------------~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~ 704 (1167)
+ +..|+|+||||+|+|+++|||+||+|+|++|++++|++|++++ ..+|......... .+.
T Consensus 561 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~~i~~Lf~~~~~~~~~-------~~~ 633 (1052)
T 4anj_A 561 RKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKD-------TKQ 633 (1052)
T ss_dssp GGCSCSTTTTCCTTSEEEEEETTEEEEEECTTHHHHHBCCCCHHHHHHHHTCSCHHHHHTTCC-----------------
T ss_pred cccccccccccCCCCCeEEEcCCccEEEecCChhhhccccccHHHHHHHHhCCcHHHHHhhhcccccccc-------ccC
Confidence 2 3469999999999999999999999999999999999999875 5678543211110 011
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCccChHH
Q 001063 705 GGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQK 784 (1167)
Q Consensus 705 ~~~~~~~~tv~~~f~~qL~~Lm~~L~~t~phfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~e 784 (1167)
+.....+.||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+
T Consensus 634 ~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~irI~r~Gyp~R~~f~e 713 (1052)
T 4anj_A 634 KAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHE 713 (1052)
T ss_dssp ------CCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHHHHTTTCCCEEEEHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHHHHHhcCCCCcCcHHH
Confidence 11233468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccccCCChHHHHHHHHHHcCcCCcceeeCceeeeeeecccccccccccccccchhhhhhhhccchhhhhh
Q 001063 785 FARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCL 864 (1167)
Q Consensus 785 F~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aav~IQ~~~Rg~~aR~~y 864 (1167)
|++||++|+|...+..|+++.|+.||..+++++++|++|+||||||+++++.||+.|...+..++.+|+.+|||++|++|
T Consensus 714 F~~RY~~L~~~~~~~~d~k~~~~~iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~~~~iq~~r~~l~r~~~ 793 (1052)
T 4anj_A 714 LYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRW 793 (1052)
T ss_dssp HHHHHHTTSCSSGGGSCHHHHHHHHHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccccCCCHHHHHHHHHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999999999999999999999999999999888776666678999999999
Q ss_pred hhhchhhhhHHHHHHhHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001063 865 KELRRGIVALQSFIRGEKIRKEYALVLQ-RHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQS 925 (1167)
Q Consensus 865 ~~lr~aai~IQs~~Rg~~aRr~y~~l~~-~~~AAi~IQ~~~R~~~~Rr~y~~~r~aai~iQs 925 (1167)
++++.+++.||..+|++..|+.+..... ...++.-+++.||++..|++|...+ +.+.+|.
T Consensus 794 ~k~~~~a~~i~~~~r~~~~r~~~~~~w~~l~~~v~pll~~~~~~~~~r~~~~~~-~~~~~~~ 854 (1052)
T 4anj_A 794 KKVQWCSLSVIKLKNKIKYRAEAVSKGEELFTGVVPILVELDGDVNGHKFSVSG-EGEGDAT 854 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEEEEEEEETTEEEEEEE-EEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhhhhhHHHHHHHHHhhhhhccC-Cccccch
Confidence 9999999999999998876665422110 0112233344556666777665533 3344443
No 7
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=2.7e-198 Score=1879.36 Aligned_cols=789 Identities=38% Similarity=0.609 Sum_probs=721.3
Q ss_pred ccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEcCC-CcEEEEeCCCcccCCCCccCCccccccCCCCCchhHHHHHH
Q 001063 113 SYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPE-GKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLH 191 (1167)
Q Consensus 113 ~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~-g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~ 191 (1167)
+|..++ +||+++++++|..|+|++..+++++|.+.+ |++++|+.+++.|+||+.++++|||+.|++|||++|||||+
T Consensus 4 ~~~~~~--~vwv~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~nL~ 81 (995)
T 2ycu_A 4 EWTARR--LVWVPSELHGFEAAALRDEGEEEAEVELAESGRRLRLPRDQIQRMNPPKFSKAEDMAELTCLNEASVLHNLR 81 (995)
T ss_dssp CCGGGC--EEEEEETTTEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBGGGCSSCSHHHHHHHHH
T ss_pred cccCCC--eEEEECCCCceEEEEEEEecCCeEEEEECCCCeEEEeeHHHcccCCCccccccchhhhhccccHHHHHHHHH
Confidence 555554 899999999999999999999999999864 56999999999999999999999999999999999999999
Q ss_pred HHhhcCcceeccCCceEecCCCCCCCCCcHHHHHHhhcCCCC--CCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhh
Q 001063 192 YRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTE 269 (1167)
Q Consensus 192 ~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe 269 (1167)
.||..+.||||+|+||||||||+++|||+++++..|+++... ||||||||+.||++|+.+++||||||||||||||||
T Consensus 82 ~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe 161 (995)
T 2ycu_A 82 ERYYSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTE 161 (995)
T ss_dssp HHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHH
T ss_pred HHHhcCceeeecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchh
Confidence 999999999999999999999999999999999999998765 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCC----------CCcchhhhhhhHHHHhhcCcccCCCCCCCcccceEEEEEcCCCceeeeeeeeeec
Q 001063 270 TAKIAMQYLAALGGG----------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLL 339 (1167)
Q Consensus 270 ~~K~il~yLa~~~~~----------~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLL 339 (1167)
++|+||+|||+++++ +.|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||+|++|||
T Consensus 162 ~~K~i~~yla~~~~~~~~~~~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLL 241 (995)
T 2ycu_A 162 NTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLL 241 (995)
T ss_dssp HHHHHHHHHHHHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECC
T ss_pred hHHHHHHHHHHhcccCCccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCEeeeEEEEEec
Confidence 999999999999865 3589999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeccCCCccchhhHHHHcCCCHHHHhhccCCCccccccccCCCcccCCCcchHHHHHHHHHHHhhcCCCHHHHHH
Q 001063 340 EKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQES 419 (1167)
Q Consensus 340 EKsRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lg~s~~e~~~ 419 (1167)
||||||.|++||||||||||||+|+++++++.|+|.++.+|+||++++ ..+++ ||+++|..++.||++|||+++++..
T Consensus 242 EksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~ 319 (995)
T 2ycu_A 242 EKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGP-SSSPG-QERELFQETLESLRVLGFSHEEIIS 319 (995)
T ss_dssp CGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTSTTCS-CSSTT-THHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCeeeccCCCCCcchhHHHHHcCCCHHHHHHcCCCChHHcccccCCc-cccCC-cHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999987 57888 9999999999999999999999999
Q ss_pred HHHHHHHHHHhcCeeeEeeCCCCccccCChhHHHHHHHhcCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHHHHHHH
Q 001063 420 VFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALA 499 (1167)
Q Consensus 420 i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~aL~~~~i~~~~e~i~~~lt~~qA~~~rdala 499 (1167)
||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+|+|.+++++|++||.++|||||
T Consensus 320 i~~ilaaILhlGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdala 399 (995)
T 2ycu_A 320 MLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALA 399 (995)
T ss_dssp HHHHHHHHHHGGGCCCEECSSSCCEECSCCHHHHHHHHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccceEeecCCCcccccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHH
Confidence 99999999999999999876667788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHHHHHhhHHHHHHHHHhhhHHHHHHHHhcCCc
Q 001063 500 KSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGID 579 (1167)
Q Consensus 500 k~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~ 579 (1167)
|+||++||+|||.+||.+|.........+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+
T Consensus 400 k~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~ 479 (995)
T 2ycu_A 400 KATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIP 479 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCC
Confidence 99999999999999999998654325689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccc-CCcHhHHHHhhc--CCCccccccccccCCCCCCcHHHHHHHHHHhCCCCCcccCC----CCceEEEeecceee
Q 001063 580 WAKVDF-EDNKDCLNLFEK--KPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER----DKSFTVSHYAGEVI 652 (1167)
Q Consensus 580 ~~~v~f-~dn~~~ldlie~--~p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~----~~~F~I~HyaG~V~ 652 (1167)
|+.|+| .||++|||||++ +|.|||+||||||++|++||.+|++||+..|++|++|.+++ ...|+|+||||+|+
T Consensus 480 w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~ 559 (995)
T 2ycu_A 480 WTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVD 559 (995)
T ss_dssp CCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEE
T ss_pred ccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCcc
Confidence 999999 599999999998 49999999999999999999999999999899999998765 47999999999999
Q ss_pred ecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccC--CCc-cCCCCCCCcccHHHHHHHHHHHHHHH
Q 001063 653 YDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVG--PLY-KAGGADSQKLSVATKFKGQLFQLMQR 728 (1167)
Q Consensus 653 Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~--~~~-~~~~~~~~~~tv~~~f~~qL~~Lm~~ 728 (1167)
|+++|||+||+|+|++|++++|++|++.+ ..+|.......+.....+ +.. ......+...||+++|+.||+.||++
T Consensus 560 Y~~~gfleKN~D~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~tv~~~fk~sL~~Lm~~ 639 (995)
T 2ycu_A 560 YKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMAT 639 (995)
T ss_dssp ECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHTSSCCSSCSCCC-------------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccccHHHHHHHHhCcHHHHHHHhhcccccccccccccccccccccCcCCCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875 568864321100000000 000 00112235689999999999999999
Q ss_pred HhccCCeeeeecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCccChHHHHHHhhhhccccccC--CChHHHH
Q 001063 729 LESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVS 806 (1167)
Q Consensus 729 L~~t~phfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~ 806 (1167)
|.+|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|.+...+. .|+++.|
T Consensus 640 L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~ 719 (995)
T 2ycu_A 640 LSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQAC 719 (995)
T ss_dssp HHTSEEEEEEEECCCSSCCTTCCCTTTHHHHHHHHTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSCCSC
T ss_pred HHhcCcceeeeecCCccccccccCHHHHHHHhcccchHHHHHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999886653 4788899
Q ss_pred HHHHHHcCcCCcceeeCceeeeeeecccccccccccccccc------hhhhhhhhccchhhhhhhhhchhhhhHHHHHHh
Q 001063 807 VAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHG------ILRVQSCFRGHQARLCLKELRRGIVALQSFIRG 880 (1167)
Q Consensus 807 ~~il~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~a------av~IQ~~~Rg~~aR~~y~~lr~aai~IQs~~Rg 880 (1167)
+.||..++++++.|++|+||||||+++++.||+.|+..+.. +..+++|+|+..++..++..+.+++.||++||+
T Consensus 720 ~~ll~~~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~~~l~~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~ 799 (995)
T 2ycu_A 720 EKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNA 799 (995)
T ss_dssp CCSCCCSSEEESSEEEESSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhheeecceEEEEecchhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999988763 345788999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001063 881 EKIRKEYALVLQRHRAAVVIQRQIKS 906 (1167)
Q Consensus 881 ~~aRr~y~~l~~~~~AAi~IQ~~~R~ 906 (1167)
+.+++.+....+ ......||..++.
T Consensus 800 f~~fr~~ekpp~-~~ek~rLeal~~~ 824 (995)
T 2ycu_A 800 HKEYKKTEKPPK-GQEVSELEAIYNS 824 (995)
T ss_dssp HTTHHHHTHHHH-HHHHHHHCSSSCC
T ss_pred HHHHHHHhccch-HHHHHHHHHHHHH
Confidence 988888754321 1224566666653
No 8
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=3.2e-197 Score=1866.38 Aligned_cols=786 Identities=41% Similarity=0.683 Sum_probs=712.7
Q ss_pred CCcCcccCCCCCCccccCCcccccccccccccCcEEE---EecCCCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCccc
Q 001063 87 EDLDSAASPLPSVSASHTDRRWSDTTSYAGKKKLQSW---FQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVS 163 (1167)
Q Consensus 87 ~~~~~~~~~~p~~~~~~~~~~w~~~~~~~~~~~~~vw---~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~ 163 (1167)
..++.++.+.|++..+.++..-... +|..++ +|| +++++++|..|+|++..+++++|.+++|++++|+.+++.|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~--~vW~~~v~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~ 79 (1010)
T 1g8x_A 3 PIHDRTSDYHKYLKVKQGDSDLFKL-TVSDKR--YIWYNPDPDERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQ 79 (1010)
T ss_dssp TTSCTTSHHHHHHSCCCCSCCSSSC-CCCCCC--EEEECSSTTCTTCCEEEEEEEEETTEEEEECSSSSEEEEETTTCCB
T ss_pred chhhhhcchhhhHhcchhhhhHhhc-chhcCC--ceeCccCcCcccCeeEEEEEEecCCeEEEEecCCcEEEecHHhccc
Confidence 3455566666667665443111111 455554 899 9999999999999999999999999999999999999999
Q ss_pred CCCCccCCccccccCCCCCchhHHHHHHHHhhcCcceeccCCceEecCCCCCCCCCcHHHHHHhhcCCCC--CCchhHHH
Q 001063 164 ANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAIT 241 (1167)
Q Consensus 164 ~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA 241 (1167)
+||+.+++++||+.|++|||++|||||+.||..+.||||+|++|||||||+++|||+++++..|+++... ||||||||
T Consensus 80 ~np~~~~~~~Dl~~L~~l~e~~vl~nL~~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA 159 (1010)
T 1g8x_A 80 RNPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAIS 159 (1010)
T ss_dssp CCCGGGTTCSBGGGCSSCCHHHHHHHHHHHHTTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHH
T ss_pred cCcchhcchhhhhhhhcccHHHHHHHHHHHHhhCCceeccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765 89999999
Q ss_pred HHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHccCCC------CcchhhhhhhHHHHhhcCcccCCCCCCCcc
Q 001063 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRF 315 (1167)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~------~i~~~il~snpiLEAFGNAkT~~N~NSSRF 315 (1167)
+.||++|+.+++||||||||||||||||++|+||+|||++++++ .|+++|+++||||||||||||++|||||||
T Consensus 160 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRF 239 (1010)
T 1g8x_A 160 DVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEF 239 (1010)
T ss_dssp HHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECS
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCcccc
Confidence 99999999999999999999999999999999999999998653 588999999999999999999999999999
Q ss_pred cceEEEEEcCCCceeeeeeeeeeccceeeeeccCCCccchhhHHHHcCCCHHHHhhccCCCccccccccCCCcccCCCcc
Q 001063 316 GKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVD 395 (1167)
Q Consensus 316 GK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~d 395 (1167)
||||+|+||.+|.|+||+|.+|||||||||.|++||||||||||||+|+++++++.|+|.++.+|+||++++|..++++|
T Consensus 240 GK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~d 319 (1010)
T 1g8x_A 240 GKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVS 319 (1010)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGSSSSCCCCBTCC
T ss_pred ceEEEEEECCCCCCcceEEEEEEcCCceeeeecCCCCcchhHHHHHcCCCHHHHHHhCCCChHhcchhcCCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEeeCCCCccccCChhHHHHHHHhcCCCHHHHHHhHcccee
Q 001063 396 DAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKM 475 (1167)
Q Consensus 396 D~~~f~~l~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~aL~~~~i 475 (1167)
|+++|..++.||++|||+++++..||+|||||||||||+|...++ +.+.+.+.+.++.||.||||++++|.++||++++
T Consensus 320 D~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 398 (1010)
T 1g8x_A 320 DEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAG-EGAVLKDKTALNAASTVFGVNPSVLEKALMEPRI 398 (1010)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTT-SSCBCSCCHHHHHHHHHHTSCHHHHHHHHHSCEE
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecCC-CccccCChHHHHHHHHHHCCCHHHHHHHHhCcEE
Confidence 999999999999999999999999999999999999999987655 6788899999999999999999999999999999
Q ss_pred eeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHHHHHhhH
Q 001063 476 RVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANE 555 (1167)
Q Consensus 476 ~~~~e~i~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNE 555 (1167)
.+|+|.+++++|++||.++||||||+||++||+|||.+||.+|.... ...+||||||||||+|+.|||||||||||||
T Consensus 399 ~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~--~~~~IgvLDI~GFE~f~~NsfEQlcINy~NE 476 (1010)
T 1g8x_A 399 LAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER--KAYFIGVLDISGFEIFKVNSFEQLCINYTNE 476 (1010)
T ss_dssp ESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS--CSEEEEEEECCCCCCCSSBCHHHHHHHHHHH
T ss_pred EeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cCceeeeccCcccccCCcCcHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999998643 5789999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCceeecccC-CcHhHHHHhhc-CCCccccccccccCCCCCCcHHHHHHHHHHhC-CCC
Q 001063 556 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEK-KPLGLLSLLDEESTFPNGTDLTFANKLKQHLN-SNP 632 (1167)
Q Consensus 556 kLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~-dn~~~ldlie~-~p~Gll~lLDee~~~p~~td~~f~~kl~~~~~-~~~ 632 (1167)
+|||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||++ +|.|||+||||||++|++||.+|++||+++++ +|+
T Consensus 477 kLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~ 556 (1010)
T 1g8x_A 477 KLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNA 556 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999995 99999999998 59999999999999999999999999999999 999
Q ss_pred CcccCC--CCceEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCC
Q 001063 633 CFRGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADS 709 (1167)
Q Consensus 633 ~f~~~~--~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~ 709 (1167)
+|.+++ ...|+|+||||+|+|+++|||+||+|+|++|++++|++|++.+ ..+|.... .+ +. ++...
T Consensus 557 ~f~~~~~~~~~F~i~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~~~~lf~~~~--~~-----~~----~~k~~ 625 (1010)
T 1g8x_A 557 KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPN--IA-----SR----AKKGA 625 (1010)
T ss_dssp TEECCTTCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHCHH--HH-----SC----CCCSS
T ss_pred CcccCCCCCCCEEEeeeceEEEEeecCccccccccccHHHHHHHHhCcHHHHHHHhcccc--cc-----cC----CCCCC
Confidence 998765 3699999999999999999999999999999999999999875 56886432 00 00 11123
Q ss_pred CcccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCccChHHHHHHh
Q 001063 710 QKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRY 789 (1167)
Q Consensus 710 ~~~tv~~~f~~qL~~Lm~~L~~t~phfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY 789 (1167)
.+.||+++|+.||+.||++|.+|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||
T Consensus 626 ~~~tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY 705 (1010)
T 1g8x_A 626 NFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRY 705 (1010)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTSEEEEEEEECSCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHTTSCCEEEEHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCeeeeeecCCcccccCCcChhhcchhcccCccHHHHHHHHhCCcccccHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccc--CCChHHHHHHHHHHcCcCCcceeeCceeeeeeecccccccccccccccchh-hhhhhhccchhhhhhhh
Q 001063 790 GFLLLESVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGIL-RVQSCFRGHQARLCLKE 866 (1167)
Q Consensus 790 ~~L~~~~~~--~~d~~~~~~~il~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aav-~IQ~~~Rg~~aR~~y~~ 866 (1167)
++|.+. ++ ..|+++.|+.||..++++++.|++|+||||||+++++.||+.|...+..++ .||...+
T Consensus 706 ~~L~~~-~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~tkVF~r~~~l~~LE~~R~~~l~~~~~~iQY~~~---------- 774 (1010)
T 1g8x_A 706 YLLAPN-VPRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKR---------- 774 (1010)
T ss_dssp GGGSTT-CCTTCSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHhCCC-CCcCCCCHHHHHHHHHHHcCCCccceeehhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 999987 54 348999999999999999999999999999999999999999998887654 4442211
Q ss_pred hchhhhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001063 867 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSR 907 (1167)
Q Consensus 867 lr~aai~IQs~~Rg~~aRr~y~~l~~~~~AAi~IQ~~~R~~ 907 (1167)
+..++.|+|+..++... +....+...||+.++.+
T Consensus 775 ----a~~L~~WIr~kqa~l~~---r~~~~sl~~IQ~ll~~f 808 (1010)
T 1g8x_A 775 ----ANELVQWINDKQASLES---RDFGDSIESVQSFMNAH 808 (1010)
T ss_dssp ----HHHHHHHHHHHHHHHHC---CCCCSSHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHh---hhccccHHHHHHHHHHH
Confidence 22345566655554433 11223566677666654
No 9
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=1.7e-198 Score=1818.12 Aligned_cols=741 Identities=43% Similarity=0.717 Sum_probs=642.6
Q ss_pred cCcccCCCCCCccccCC-cccccccccccccCcEEEEecC---CCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCcccC
Q 001063 89 LDSAASPLPSVSASHTD-RRWSDTTSYAGKKKLQSWFQLP---NGNWELGKILSISGTESVISLPEGKVLKVKSENLVSA 164 (1167)
Q Consensus 89 ~~~~~~~~p~~~~~~~~-~~w~~~~~~~~~~~~~vw~~~~---~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~ 164 (1167)
++....+.|++..+.++ ..-.+..+ .+.+||++++ +++|..|+|++..+++++|..++|++++|+.+++.++
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~vWv~~~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~ 80 (770)
T 1w9i_A 5 HDRTSDYHKYLKVKQGDSDLFKLTVS----DKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQR 80 (770)
T ss_dssp TCTTSHHHHHHSCCCCC--------------CCEEEECSSTTCTTCCEEEEEEEECSSEEEEECTTSCEEEEETTTCEEC
T ss_pred hhhhcchhhhhhcccchhHHhhhhcc----CCCEEEeeCCcccccCceEEEEEEecCCeEEeecCCCcEEEEchHhcccc
Confidence 44455555666665443 22221212 5669999999 8999999999999999999988999999999999999
Q ss_pred CCCccCCccccccCCCCCchhHHHHHHHHhhcCcceeccCCceEecCCCCCCCCCcHHHHHHhhcCCCC--CCchhHHHH
Q 001063 165 NPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITD 242 (1167)
Q Consensus 165 np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~ 242 (1167)
||+.++++|||+.|++|||++|||||+.||..+.||||+|++|||||||+++|||+++++..|+++... ||||||||+
T Consensus 81 np~~~~~~~Dl~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~ 160 (770)
T 1w9i_A 81 NPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISD 160 (770)
T ss_dssp CCGGGTTCSBGGGCSCCCHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHH
T ss_pred CcccccchhhhhhhccCCHHHHHHHHHHHHhcCCceeccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 899999999
Q ss_pred HHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHccCCC------CcchhhhhhhHHHHhhcCcccCCCCCCCccc
Q 001063 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFG 316 (1167)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~------~i~~~il~snpiLEAFGNAkT~~N~NSSRFG 316 (1167)
.||++|+++++||||||||||||||||++|+||+|||++++++ .|+++|+++||||||||||||++||||||||
T Consensus 161 ~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFG 240 (770)
T 1w9i_A 161 VAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFG 240 (770)
T ss_dssp HHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSE
T ss_pred HHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHHHHhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcc
Confidence 9999999999999999999999999999999999999998753 5899999999999999999999999999999
Q ss_pred ceEEEEEcCCCceeeeeeeeeeccceeeeeccCCCccchhhHHHHcCCCHHHHhhccCCCcccccc-ccCCCcccCCCcc
Q 001063 317 KLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKY-LRQSSCYSINGVD 395 (1167)
Q Consensus 317 K~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~y-L~~~~~~~~~~~d 395 (1167)
|||+|+||.+|+|+||+|++|||||||||.|++||||||||||||+|+++++++.|+|.++.+|+| |++ +|..++++|
T Consensus 241 Kfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll~~-g~~~~~~~d 319 (770)
T 1w9i_A 241 KFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQS-GCVDIKGVS 319 (770)
T ss_dssp EEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTSSS-SCCCCTTCC
T ss_pred eEEEEEECCCCCEeeeEEEEEeccCceeecccCCCCcchhHHHHhcCCCHHHHHHhCCCChhhccccccC-CccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 776 467899999
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEeeCCCCccccCChhHHHHHHHhcCCCHHHHHHhHcccee
Q 001063 396 DAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKM 475 (1167)
Q Consensus 396 D~~~f~~l~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~aL~~~~i 475 (1167)
|+++|+.++.||++|||+++++..||+|||||||||||+|. .++++.+.+.+.+.++.||.||||++++|.++|+++++
T Consensus 320 D~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~-~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~ 398 (770)
T 1w9i_A 320 DSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFE-KGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRI 398 (770)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCE-ECSSSSEECSCCHHHHHHHHHHTCCHHHHHHHHHSCEE
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEe-cCCCCccccCChHHHHHHHHHhCCCHHHHHHHhhCcEE
Confidence 99999999999999999999999999999999999999999 55567788899999999999999999999999999999
Q ss_pred eeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHHHHHhhH
Q 001063 476 RVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANE 555 (1167)
Q Consensus 476 ~~~~e~i~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNE 555 (1167)
.+|+|.+++++|++||.++||||||+||++||+|||.+||.+|..... ..+||||||||||+|+.|||||||||||||
T Consensus 399 ~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~--~~~IGvLDI~GFE~F~~NsFEQlCINyaNE 476 (770)
T 1w9i_A 399 LAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK--AYFIGVLDIYGFEIFKVNSFEQLCINYTNE 476 (770)
T ss_dssp EETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC--SEEEEEEECCCCCCCSSCCHHHHHHHHHHH
T ss_pred EeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCeeeeccCccccccccCCHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999986433 789999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhcCCceeecccC-CcHhHHHHhhc-CCCccccccccccCCCCCCcHHHHHHH-HHHhCCCC
Q 001063 556 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEK-KPLGLLSLLDEESTFPNGTDLTFANKL-KQHLNSNP 632 (1167)
Q Consensus 556 kLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~-dn~~~ldlie~-~p~Gll~lLDee~~~p~~td~~f~~kl-~~~~~~~~ 632 (1167)
+|||+||+|+|+.||+||.+|||+|+.|+|. ||++|||||++ +|.|||+||||||++|++||.+|++|| .+++++|+
T Consensus 477 kLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~kL~~~~~~~~~ 556 (770)
T 1w9i_A 477 KLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNA 556 (770)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHHHHHHHHTTTST
T ss_pred HHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999995 99999999998 499999999999999999999999996 55788999
Q ss_pred CcccCCC--CceEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCC
Q 001063 633 CFRGERD--KSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADS 709 (1167)
Q Consensus 633 ~f~~~~~--~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~ 709 (1167)
+|.+++. ..|+|+||||+|+|+++|||+||+|+|++|++++|++|++.+ ..+|.... +. +. ++...
T Consensus 557 ~f~~p~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~-~~------~~----~~k~~ 625 (770)
T 1w9i_A 557 KYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPN-IA------SR----AKKGA 625 (770)
T ss_dssp TEECCSSCSSEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCSSTTHHHHHHCHH-HH------CC----CEETT
T ss_pred CccCCCCCCCceEeeccCccccccccChhhhccCcccHHHHHHHHhchHHHHHHHhhccC-CC------CC----CCCCC
Confidence 9987753 799999999999999999999999999999999999999875 66886432 00 00 00122
Q ss_pred CcccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCccChHHHHHHh
Q 001063 710 QKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRY 789 (1167)
Q Consensus 710 ~~~tv~~~f~~qL~~Lm~~L~~t~phfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY 789 (1167)
...||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||
T Consensus 626 ~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY 705 (770)
T 1w9i_A 626 NFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRY 705 (770)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTSEEEEEEEECSCSSCCSSCCCHHHHHHHHHHSSHHHHHHHTTSSCCEEEESCC-----
T ss_pred CCcchhHHHHHHHHHHHHHHHhcCceeeeeecCCcccccCccCchhhHhHhcccchHHHHHHHHhcCcccccHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccC--CChHHHHHHHHHHcCcCCcceeeCceeeeeeecccccccccccccccchh
Q 001063 790 GFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGIL 849 (1167)
Q Consensus 790 ~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aav 849 (1167)
++|++ .++. .|+++.|+.||..++++++.|++|+||||||+++++.||+.|+..+..++
T Consensus 706 ~~L~~-~~~~~~~d~k~~~~~lL~~~~~~~~~~~~G~TKVF~r~~~l~~LE~~R~~~l~~~~ 766 (770)
T 1w9i_A 706 YLLAP-NVPRDAEDSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARIEEARELRGDYKD 766 (770)
T ss_dssp -------------------------------CCCCCSSEEEECTTTTTC-------------
T ss_pred HHhcc-ccccCCCCHHHHHHHHHHhcCCCcccEEeCCeeEEecccHHHHHHHHHHHHHHHHh
Confidence 99998 5543 48899999999999999999999999999999999999999998886553
No 10
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=2.7e-197 Score=1821.83 Aligned_cols=730 Identities=36% Similarity=0.622 Sum_probs=660.7
Q ss_pred EEEEecCCCCEEeEEEEEecCCeeEEEcC--CCcEEEEeCCCcccCCCCccCCccccccCCCCCchhHHHHHHHHhhcCc
Q 001063 121 QSWFQLPNGNWELGKILSISGTESVISLP--EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDM 198 (1167)
Q Consensus 121 ~vw~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~ 198 (1167)
+||+++++++|..|+|++..++.++|.+. +|++++|+.+++.|+||+..+++|||+.|++|||++|||||+.||.+++
T Consensus 2 ~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~L~E~svL~nL~~Ry~~~~ 81 (784)
T 2v26_A 2 PVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDR 81 (784)
T ss_dssp CEEEEETTTEEEEEEEEEECSSEEEEEC----CCCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHHTTC
T ss_pred eEEEEcCCCcEEEEEEEEecCCeEEEEEECCCCCEEEEehhhccccccccccccchhhhhhhccHHHHHHHHHHHHhcCc
Confidence 59999999999999999999999998864 6889999999999999999999999999999999999999999999999
Q ss_pred ceeccCCceEecCCCCCC-CCCcHHHHHHhhcCCCC--CCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHH
Q 001063 199 IYTKAGPVLVAINPFKKV-PLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 199 iYT~~G~iLiavNP~k~l-~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il 275 (1167)
||||+|++|||||||+++ |||+++++..|+++... ||||||||+.||++|+++++||||||||||||||||++|+||
T Consensus 82 IYTy~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 82 IYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp CEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred eeeeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHH
Confidence 999999999999999999 69999999999998765 899999999999999999999999999999999999999999
Q ss_pred HHHHHccCCC-CcchhhhhhhHHHHhhcCcccCCCCCCCcccceEEEEEcCCCceeeeeeeeeeccceeeeeccCCCccc
Q 001063 276 QYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAY 354 (1167)
Q Consensus 276 ~yLa~~~~~~-~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnf 354 (1167)
+|||++++++ .|+++|+++||||||||||||+||||||||||||+|+||.+|+|+||+|++|||||||||.|++|||||
T Consensus 162 ~yla~~~~~~~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNf 241 (784)
T 2v26_A 162 RYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNY 241 (784)
T ss_dssp HHHHHHHC------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCCGGGTCCCTTCCSB
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEeeeeeeeeeccCCeEeeecCCCCcc
Confidence 9999987654 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHcCCCHHHHhhccCCCccccccccCCCc--------------------------ccCCCcchHHHHHHHHHHHh
Q 001063 355 HIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSC--------------------------YSINGVDDAEQFRIVVEALD 408 (1167)
Q Consensus 355 HIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~--------------------------~~~~~~dD~~~f~~l~~Al~ 408 (1167)
|||||||+|+++++|+.|+|.++.+|+||+++.+ ..++++||+++|+.++.||+
T Consensus 242 HIFYqLlaG~~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~ 321 (784)
T 2v26_A 242 HIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMK 321 (784)
T ss_dssp HHHHHHHHHSCHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHH
T ss_pred hhhHHHHcCCCHHHHHHcCCCChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753 24568999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhcCeeeEeeCC-CCcccc--CChhHHHHHHHhcCCCHHHHHHhHccceee-----eCCc
Q 001063 409 IVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN-ENHVEP--VADEGLITVAKLIGCDIGELKLALSTRKMR-----VGND 480 (1167)
Q Consensus 409 ~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~-~~~~~~--~~~~~l~~aa~LLgv~~~~L~~aL~~~~i~-----~~~e 480 (1167)
+|||+++|+..||+|||||||||||+|...++ ++.+.+ .+.+.++.||.||||++++|.++||+|++. ++|+
T Consensus 322 ~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge 401 (784)
T 2v26_A 322 KIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGT 401 (784)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC----------
T ss_pred HcCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCC
Confidence 99999999999999999999999999987432 233444 457899999999999999999999999997 6789
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHHHHHhhHHHHHH
Q 001063 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQH 560 (1167)
Q Consensus 481 ~i~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNEkLQ~~ 560 (1167)
.+++++|++||.++||||||+||++||+|||.+||.+|... ....+||||||||||+|+.|||||||||||||+|||+
T Consensus 402 ~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~--~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~ 479 (784)
T 2v26_A 402 VIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQF 479 (784)
T ss_dssp -CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred eEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999753 3467999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHhcCCceeecccCCcHhHHHHhhcCCCccccccccccCCCCCCcHHHHHHHHHHhCCCCCcccCC--
Q 001063 561 FNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER-- 638 (1167)
Q Consensus 561 f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldlie~~p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~-- 638 (1167)
||+|+|+.||+||.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||.+|++||++++++|++|..++
T Consensus 480 F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~p~~~ 559 (784)
T 2v26_A 480 FNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKS 559 (784)
T ss_dssp HHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHHTTTCTTEECGGGC
T ss_pred HHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHHHHhCCCcccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999885442
Q ss_pred ----------CCceEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCC
Q 001063 639 ----------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGA 707 (1167)
Q Consensus 639 ----------~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~ 707 (1167)
+..|+|+||||+|+|+++|||+||+|+|+++++++|++|++.+ ..+|...... +.. .+.+..
T Consensus 560 ~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~l~~Lf~~~~~~-~~~------~~~~~~ 632 (784)
T 2v26_A 560 KLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNN-NKD------TKQKAG 632 (784)
T ss_dssp SSGGGTTSCTTSEEEEEETTEEEEEECTTHHHHTBCCCCHHHHHHHHTCSCHHHHHHC----------------------
T ss_pred cccccccccCCCceEeeecCccEeeeccCHHHhccchhhHHHHHHHHhchhhHHHHHccccccc-ccC------cccCCC
Confidence 2489999999999999999999999999999999999999875 5688653211 000 000111
Q ss_pred CCCcccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCccChHHHHH
Q 001063 708 DSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFAR 787 (1167)
Q Consensus 708 ~~~~~tv~~~f~~qL~~Lm~~L~~t~phfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~ 787 (1167)
.....||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++
T Consensus 633 ~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~ 712 (784)
T 2v26_A 633 KLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYN 712 (784)
T ss_dssp -CCCCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHTSCCSEEEEHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHHccCCeeEEEecCCcccccCccccccccccccccccHHHHHHHHhcCCccccHHHHHH
Confidence 23458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccccCCChHHHHHHHHHHcCcCCcceeeCceeeeeeecccccccccccccccchhhhhhhhccch
Q 001063 788 RYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQ 859 (1167)
Q Consensus 788 RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~aav~IQ~~~Rg~~ 859 (1167)
||++|++...+..|++..|+.||..+++++++|++|+||||||+++++.||..+......+..|++.+|+|+
T Consensus 713 RY~~L~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~~~ii~~v~~wl 784 (784)
T 2v26_A 713 MYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWL 784 (784)
T ss_dssp HHGGGCCHHHHTSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred HHhhcCCcccCCCCHHHHHHHHHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHHHHHHHHHHhhC
Confidence 999999987767799999999999999999999999999999999999999886655545555666666653
No 11
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.8e-191 Score=1747.96 Aligned_cols=662 Identities=39% Similarity=0.665 Sum_probs=608.7
Q ss_pred cCCccccccCCCCCchhHHHHHHHHhhcCcceeccCCceEecCCCCCCCCCcHHHHHHhhcCCCC--CCchhHHHHHHHH
Q 001063 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIR 246 (1167)
Q Consensus 169 ~~~~~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~ 246 (1167)
.+++|||+.|++|||++|||||+.||..+.||||+|++|||||||+++|+|+++++..|+++... ||||||||+.||+
T Consensus 7 ~~~~~Dl~~L~~l~E~~vl~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~ 86 (697)
T 1lkx_A 7 AEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYR 86 (697)
T ss_dssp --CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHH
T ss_pred ccCCcccccCCCCCHHHHHHHHHHHHhcCCcEEeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999998764 8999999999999
Q ss_pred HHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHccC-CC----CcchhhhhhhHHHHhhcCcccCCCCCCCcccceEEE
Q 001063 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-GS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (1167)
Q Consensus 247 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~-~~----~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l 321 (1167)
+|+++++||||||||||||||||++|+||+|||++++ ++ .|+++|+++||||||||||||+||||||||||||+|
T Consensus 87 ~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i 166 (697)
T 1lkx_A 87 SMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEM 166 (697)
T ss_dssp HHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEE
T ss_pred HHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEE
Confidence 9999999999999999999999999999999999987 32 588999999999999999999999999999999999
Q ss_pred EEcCCCceeeeeeeeeeccceeeeeccCCCccchhhHHHHcCCCHHHHhhccCC-CccccccccCCCcccCCCcchHHHH
Q 001063 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLM-SAKEYKYLRQSSCYSINGVDDAEQF 400 (1167)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~-~~~~y~yL~~~~~~~~~~~dD~~~f 400 (1167)
+||.+|.|+||+|++|||||||||.|++||||||||||||+|+++++++.|+|. ++.+|+||++++|..++++||+++|
T Consensus 167 ~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f 246 (697)
T 1lkx_A 167 QFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEF 246 (697)
T ss_dssp EECTTCCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHH
T ss_pred EECCCCCEeeeeeeeeeccCceeeeecCCCCceeehhHHhcCCCHHHHHHhcCCCChhhCccccCCCCcccCCCchHHHH
Confidence 999999999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEee----CCCCccccCChhHHHHHHHhcCCCHHHHHHhHccceee
Q 001063 401 RIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVI----DNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMR 476 (1167)
Q Consensus 401 ~~l~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~----~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~aL~~~~i~ 476 (1167)
+.++.||++|||+++|+..||+|||||||||||+|... ++.+.+++.+.+.++.||.||||++++|.++||+|++.
T Consensus 247 ~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~ 326 (697)
T 1lkx_A 247 KIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSIS 326 (697)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEEe
Confidence 99999999999999999999999999999999999872 22257889999999999999999999999999999999
Q ss_pred eC----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHHHHH
Q 001063 477 VG----NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINY 552 (1167)
Q Consensus 477 ~~----~e~i~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINy 552 (1167)
++ +|.+++++|++||.++||||||+||++||+|||.+||.+|.... ....+||||||||||+|+.||||||||||
T Consensus 327 ~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINy 405 (697)
T 1lkx_A 327 TGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTT-EKGPVIGILDIYGFEVFQNNSFEQLNINF 405 (697)
T ss_dssp --------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-CCCCEEEEEECCCCCCCSSBCHHHHHHHH
T ss_pred eccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCceeEEeeccccccccCcCCHHHHHHHh
Confidence 99 99999999999999999999999999999999999999998643 34689999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHhcCCceeecccCCcHhHHHHhhcCCCccccccccccCCCCCCcHHHHHHHHHHhCCCC
Q 001063 553 ANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNP 632 (1167)
Q Consensus 553 aNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldlie~~p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~ 632 (1167)
|||||||+||+|+|+.||+||.+|||+|+.|+|.||++|||||+++|.|||+||||||++|++||.+|++||++++++|+
T Consensus 406 ~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~kl~~~~~~~~ 485 (697)
T 1lkx_A 406 CNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKNP 485 (697)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHHHHSSSST
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCC--------CCceEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCcc
Q 001063 633 CFRGER--------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYK 703 (1167)
Q Consensus 633 ~f~~~~--------~~~F~I~HyaG~V~Y~~~gfleKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~ 703 (1167)
+|.+++ ..+|+|+||||+|+|+++|||+||+|+|++|++++|++|++.+ ..+|.....
T Consensus 486 ~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~l~~lf~~~~~------------- 552 (697)
T 1lkx_A 486 HLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTRP------------- 552 (697)
T ss_dssp TEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHHHCC-----------------
T ss_pred ccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhccchHHHHHhcccccc-------------
Confidence 997532 4789999999999999999999999999999999999999875 567754221
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCccChH
Q 001063 704 AGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQ 783 (1167)
Q Consensus 704 ~~~~~~~~~tv~~~f~~qL~~Lm~~L~~t~phfIrCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~ 783 (1167)
.+...+..||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.
T Consensus 553 -~~~~~r~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~ 631 (697)
T 1lkx_A 553 -EDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEYT 631 (697)
T ss_dssp --------CCHHHHHHHHHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHTSHHHHHHHHHSCSBCCBSH
T ss_pred -ccccCCCCcHHHHHHHHHHHHHHHHHccCCcceEeecCCCcCCCCCcChhhccccCcccccHHHHHHHhcCCCccccHH
Confidence 0112235799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccccC--CChHHHHHHHHHHcCcCCcceeeCceeeeeeec-ccccccccccccc
Q 001063 784 KFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTRNRTL 845 (1167)
Q Consensus 784 eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~iGkTKVFLr~~-~l~~LE~~R~~~l 845 (1167)
+|+.||++|++..++. .|+++.|+.||..+++++++|++|+||||||++ .++.||+.|+.++
T Consensus 632 eF~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 632 RFYNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp HHHTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHHHHHTCC----
T ss_pred HHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHHHHHHHHHhhC
Confidence 9999999999976553 578899999999999999999999999999996 7899999998765
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.67 E-value=5.6e-16 Score=200.39 Aligned_cols=188 Identities=16% Similarity=0.222 Sum_probs=135.5
Q ss_pred ccchhhhhhhhccchhhhhhhhhchhhhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 001063 845 LHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQ 924 (1167)
Q Consensus 845 l~aav~IQ~~~Rg~~aR~~y~~lr~aai~IQs~~Rg~~aRr~y~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~aai~iQ 924 (1167)
..+++.||++||||.+|+.|.+++.+++.||++|||+++|+.|..++ +..||+.||++||+|++|+.|...+++++.||
T Consensus 816 ~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr-~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQ 894 (1080)
T 2dfs_A 816 TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMML-REHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 35789999999999999999999999999999999999999998765 46789999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhhhhhhhhc-------------------c---cCchHHH--------HHHHHHHHHH---------
Q 001063 925 SVIRGWLVRRCSGDICLLKSVES-------------------K---GNDSDEV--------LVKASFLAEL--------- 965 (1167)
Q Consensus 925 s~~Rg~laRr~~~~lr~~~~~~~-------------------~---~~~~~el--------~~~~~~l~~L--------- 965 (1167)
+.||+|++|+.+..++..++... . .....++ .....++.+|
T Consensus 895 s~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHHHHHTTTC-----------------------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988866543100 0 0000000 0111222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 001063 966 -QRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDD 1033 (1167)
Q Consensus 966 -q~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~lqkq~~~Lq~~l~~lk~~Le~~e 1033 (1167)
+.+..+++.++..++++++.++++++.+.....++|++...+++.++.++..|+++.+.++.++.+++
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344556666677777777777777777777777777777777777777777777777666554
No 13
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.75 E-value=1.5e-08 Score=85.99 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhHHHHHHHHHhhhh
Q 001063 894 HRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLL 942 (1167)
Q Consensus 894 ~~AAi~IQ~~~R~~~~Rr~y~~~r~aai~iQs~~Rg~laRr~~~~lr~~ 942 (1167)
+.||+.||++||||++|+.|..++.+++.||+.|||+++|+.+..++..
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~ 53 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRT 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888888888888888888888776644
No 14
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.72 E-value=1.6e-08 Score=82.43 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=39.0
Q ss_pred hchhhhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 001063 867 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKL 913 (1167)
Q Consensus 867 lr~aai~IQs~~Rg~~aRr~y~~l~~~~~AAi~IQ~~~R~~~~Rr~y 913 (1167)
++.+++.||++|||+++|+.|..++ +..||+.||++||||++|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~-~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEM-KVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHhh
Confidence 5678999999999999999997654 456899999999999998876
No 15
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.71 E-value=6.6e-09 Score=88.15 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=32.7
Q ss_pred cchhhhhhhhccchhhhhhhhhchhhhhHHHHHHhHHHHHHHHHHH
Q 001063 846 HGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVL 891 (1167)
Q Consensus 846 ~aav~IQ~~~Rg~~aR~~y~~lr~aai~IQs~~Rg~~aRr~y~~l~ 891 (1167)
.+++.||++||||++|+.|..++.+++.||++|||+++|+.|..++
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r 51 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777777777776654
No 16
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.45 E-value=2.4e-07 Score=75.37 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHhHHHHHHH
Q 001063 894 HRAAVVIQRQIKSRVARQKLKNIKY--SSIMIQSVIRGWLVRRCS 936 (1167)
Q Consensus 894 ~~AAi~IQ~~~R~~~~Rr~y~~~r~--aai~iQs~~Rg~laRr~~ 936 (1167)
..||+.||++|||+++|+.|..++. |++.||+.||||++|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 3689999999999999999999988 999999999999999875
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.45 E-value=7.7e-07 Score=117.62 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHhHHHHHHHHHhhhhhhhh---cccCchHHHHHHHHHHHHHH
Q 001063 893 RHRAAVVIQRQIKSRVARQKLKNIK---YSSIMIQSVIRGWLVRRCSGDICLLKSVE---SKGNDSDEVLVKASFLAELQ 966 (1167)
Q Consensus 893 ~~~AAi~IQ~~~R~~~~Rr~y~~~r---~aai~iQs~~Rg~laRr~~~~lr~~~~~~---~~~~~~~el~~~~~~l~~Lq 966 (1167)
...+++.||+.||||++|+.|.+++ .|++.||+.||+|++|+.+..++...+.. ......+++..+..++.+++
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~~~rl~~klkpLl~~a~~~~El~~L~~eL~el~ 870 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTK 870 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTTCCCCTHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999874 69999999999999998776555443311 12223345555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 967 RRVLKAEAALREKEEENDILHQRLQQYESRWS 998 (1167)
Q Consensus 967 ~rv~kae~~l~eleeEn~~L~~el~~le~r~~ 998 (1167)
.++..++..+.+++++...|++++..++..+.
T Consensus 871 ~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 871 ERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555555555555555555444443
No 18
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.90 E-value=2.3e-05 Score=67.45 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=40.6
Q ss_pred hchhhhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001063 867 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQK 912 (1167)
Q Consensus 867 lr~aai~IQs~~Rg~~aRr~y~~l~~~~~AAi~IQ~~~R~~~~Rr~ 912 (1167)
+...++.||+.+||+++|+.|.+++.++.|+.+||+++|+|+.++.
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4467899999999999999999998888899999999999988554
No 19
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.86 E-value=2.7e-05 Score=67.16 Aligned_cols=47 Identities=32% Similarity=0.426 Sum_probs=41.2
Q ss_pred hhchhhhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001063 866 ELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQK 912 (1167)
Q Consensus 866 ~lr~aai~IQs~~Rg~~aRr~y~~l~~~~~AAi~IQ~~~R~~~~Rr~ 912 (1167)
++...++.||+.+||+++|+.|.+++.++.|+.+||+++|+|+.++.
T Consensus 4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34567899999999999999999998888888899999999988654
No 20
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.78 E-value=0.0016 Score=82.50 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHhHHHHHHHHHhhhh
Q 001063 893 RHRAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSGDICLL 942 (1167)
Q Consensus 893 ~~~AAi~IQ~~~R~~~~Rr~y~~~---r~aai~iQs~~Rg~laRr~~~~lr~~ 942 (1167)
...+|+.||+.||||++|++|+++ +.|++.||+.||+|++||.+..++..
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w~~l~ 830 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLY 830 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHH
Confidence 346799999999999999999998 67999999999999999988776654
No 21
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.59 E-value=0.0025 Score=54.80 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHhHHHHHHHHHhhh
Q 001063 895 RAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSGDICL 941 (1167)
Q Consensus 895 ~AAi~IQ~~~R~~~~Rr~y~~~---r~aai~iQs~~Rg~laRr~~~~lr~ 941 (1167)
..++.||+.+||+++|+.|.++ +.|+..||..+|+|+.++.+...+.
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~W~~l 56 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKL 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHH
Confidence 5689999999999999999999 7788899999999999887655443
No 22
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.51 E-value=0.0021 Score=55.14 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHhHHHHHHHHHhh
Q 001063 895 RAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSGDIC 940 (1167)
Q Consensus 895 ~AAi~IQ~~~R~~~~Rr~y~~~---r~aai~iQs~~Rg~laRr~~~~lr 940 (1167)
..++.||+.+||+++|+.|.++ +.|+..||..+|+|+.++.+...+
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~W~~ 53 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAWWK 53 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHH
Confidence 4688999999999999999999 778999999999999987665544
No 23
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.48 E-value=0.0081 Score=59.64 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=35.6
Q ss_pred hhhccchhhhhhhhhchhhhhHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 001063 853 SCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNI 916 (1167)
Q Consensus 853 ~~~Rg~~aR~~y~~lr~aai~IQs~~Rg~~aRr~y~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~ 916 (1167)
+.+..|+.|.++++..-++...= +--+++..|..|++.||+.+|||++|+.|++.
T Consensus 13 ~kV~~WLi~sRWrK~q~~~lsvI---------KLknKI~yR~~~~i~iQktvR~~L~rkkhkPR 67 (148)
T 3gn4_A 13 KRVNHWLICSRWKKVQWCSLSVI---------KLKNKIKYRAEACIKMQKTIRMWLCKRRHKPR 67 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34555667777766654433221 11133445678899999999999999998886
No 24
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.07 E-value=0.01 Score=59.97 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=27.7
Q ss_pred HHhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
.+..+....|+|+|++|+|||+.++.+.+.+..
T Consensus 37 ~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 37 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344466789999999999999999999888765
No 25
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.63 E-value=0.036 Score=55.78 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCCCcHHHHHHhhcCCCCC-CchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 216 VPLYGNYYIEAYKSKSIES-PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 216 l~iY~~~~~~~Y~~~~~~~-PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
+.-|+.+..+.|+...... ..--.. -......+.......|+|+|++|+|||+.++.+.+.+..
T Consensus 5 l~~~~~~l~~~~~~~~~~~~~g~~~~-~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 5 LEKYSRDLTALARAGKLDPVIGRDTE-IRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TTTTEEEHHHHHHTTCSCCCCSCHHH-HHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccchhhcchHH-HHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445555666666544332 100011 122233344566789999999999999999999888764
No 26
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=94.63 E-value=0.45 Score=47.30 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhHHHHHHHHH
Q 001063 876 SFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGD 938 (1167)
Q Consensus 876 s~~Rg~~aRr~y~~l~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~aai~iQs~~Rg~laRr~~~~ 938 (1167)
+-+..|+.|.++.+..--.-+++.+..-+ .|+ ..+++.||+.+|||++|+.++.
T Consensus 13 ~kV~~WLi~sRWrK~q~~~lsvIKLknKI-------~yR--~~~~i~iQktvR~~L~rkkhkP 66 (148)
T 3gn4_A 13 KRVNHWLICSRWKKVQWCSLSVIKLKNKI-------KYR--AEACIKMQKTIRMWLCKRRHKP 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--HHHHHHHHHHHHHHHHHHhhhh
Confidence 34556667766644332222334443332 122 3699999999999999998754
No 27
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.93 E-value=0.029 Score=58.50 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=23.9
Q ss_pred HHHHhcCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..|+.......|+|.|.||||||+.++.+...+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 356666778899999999999999999998766
No 28
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.74 E-value=0.049 Score=56.73 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=27.3
Q ss_pred HhcCceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
+.......|+|.|.||||||+.++.+...|.
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456688999999999999999999999886
No 29
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.50 E-value=0.033 Score=58.10 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEeCCCCCChhhHHHHHHHHH
Q 001063 257 IIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1167)
|||||.||||||+.++.+++-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999887654
No 30
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.40 E-value=0.035 Score=58.26 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=26.9
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
.+..+.|.|.|.||||||+.++.|...+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456789999999999999999999999874
No 31
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.88 E-value=0.044 Score=56.21 Aligned_cols=25 Identities=12% Similarity=0.388 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..-|+|+|.||||||+.++.++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999998865
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.56 E-value=0.068 Score=54.47 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=25.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
...+.|+|.|++|+|||+.++.+...+..
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34688999999999999999999998874
No 33
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.55 E-value=0.043 Score=56.54 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
..|+|+|.||||||+.++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999988764
No 34
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.51 E-value=0.053 Score=56.63 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.8
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.+.|+|.|.||||||+..++++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999998764
No 35
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.49 E-value=0.11 Score=54.51 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=30.7
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
....+......++|+|+|++|+|||+.++.+.+.+...
T Consensus 42 ~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 42 ALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34444555578999999999999999999999887753
No 36
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.39 E-value=0.06 Score=55.12 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=22.8
Q ss_pred HHhcCceEEEEEeCCCCCChhhHHHHHHH
Q 001063 248 MIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
|..-.....|+|.|.||||||+.++.+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 55556678999999999999999998854
No 37
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.38 E-value=0.095 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=24.0
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
+.|+|.|++|+|||+.++.+..++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999888764
No 38
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.34 E-value=0.057 Score=54.63 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+..|+|+|-||||||+.++.+-+.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999987665
No 39
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.21 E-value=0.12 Score=56.61 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=30.3
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
++..+. -...+.|+|+|+||||||++.+.++.++...
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 344444 5678899999999999999999999988654
No 40
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.79 E-value=0.089 Score=54.90 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=23.8
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
......|.|.|.||||||+.++.+...+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999999999988763
No 41
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.76 E-value=0.077 Score=54.91 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+.|.|.|.||||||+.++++...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999987764
No 42
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.73 E-value=0.066 Score=56.26 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
....-|+|+|.||||||+.++.++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 456789999999999999999987765
No 43
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.70 E-value=0.093 Score=52.70 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
--|.|+|+|.+|||||+.++.+-+.|-
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 358999999999999999999877663
No 44
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.69 E-value=0.091 Score=52.52 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChhhHHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1167)
-|+|+|.||||||+.++.+.+.|-
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999877653
No 45
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.63 E-value=0.089 Score=54.62 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1167)
--|+|+|.||||||+.++.+.+.|
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998876
No 46
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.50 E-value=0.071 Score=55.67 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
....-|+|+|.||||||+.++.+.+.+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 346789999999999999999988766
No 47
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.35 E-value=0.11 Score=54.10 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=23.4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
....|+|.|.||||||+.++.+.+.|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998877
No 48
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.34 E-value=0.13 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
....|+|.|.||||||+.++.+...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999987765
No 49
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.17 E-value=0.11 Score=52.95 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=22.9
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
+.-|+|+|.+|||||+.++.+-+.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999988775
No 50
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.13 E-value=0.17 Score=53.06 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=27.1
Q ss_pred HhcCceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
........|+|.|.+|||||+.++.+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455678999999999999999999999886
No 51
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.05 E-value=0.097 Score=54.82 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+.|.|+||||||+..+.|+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456789999999999999999998765
No 52
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.03 E-value=0.15 Score=53.15 Aligned_cols=32 Identities=31% Similarity=0.185 Sum_probs=27.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
.....|.|+|.||||||+.++.+...|...++
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 45688999999999999999999998865543
No 53
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.03 E-value=0.085 Score=54.57 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
....|+|.|.||||||+.++.+..++
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999987765
No 54
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.97 E-value=0.13 Score=52.86 Aligned_cols=28 Identities=32% Similarity=0.340 Sum_probs=25.0
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
..|+|+|.||||||+.++.++..|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 4789999999999999999999987654
No 55
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.83 E-value=0.14 Score=51.19 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=25.4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
..+.++|.|++|+|||+.++.+..++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999988764
No 56
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.82 E-value=0.1 Score=55.66 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.....|+|+|+||||||+..+.++..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3467899999999999999999877653
No 57
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.74 E-value=0.15 Score=51.81 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=25.1
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
....|+|+|.+|||||+.++.+..+|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999998865
No 58
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.71 E-value=0.12 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
....|+|+|.||||||+.++.+.+.|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999988776
No 59
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=90.70 E-value=0.21 Score=36.49 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 001063 893 RHRAAVVIQRQIKSRVARQKLK 914 (1167)
Q Consensus 893 ~~~AAi~IQ~~~R~~~~Rr~y~ 914 (1167)
...||++||+.||+|+.|+...
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4568888898888888876643
No 60
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.58 E-value=0.13 Score=55.20 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
....|+|.|.+|||||+.++.+.+.|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999999887
No 61
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.46 E-value=0.2 Score=58.74 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=29.8
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
++..++ ......|+|+|++|||||++.+.++.++..
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 566664 366788999999999999999999988753
No 62
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.43 E-value=0.14 Score=52.75 Aligned_cols=23 Identities=48% Similarity=0.692 Sum_probs=21.3
Q ss_pred EEEEeCCCCCChhhHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1167)
.|.|.|++|||||+..|.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 63
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.42 E-value=0.15 Score=51.98 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.+.-|+|+|.+|||||+.++.+.++|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999998776
No 64
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.42 E-value=0.16 Score=56.54 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=26.7
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
.+....|.|+|.||||||+.++.+..+|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456789999999999999999999998864
No 65
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=90.41 E-value=0.16 Score=35.94 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001063 893 RHRAAVVIQRQIKSRVARQK 912 (1167)
Q Consensus 893 ~~~AAi~IQ~~~R~~~~Rr~ 912 (1167)
...||++||+.||+|+.++.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999888653
No 66
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.40 E-value=0.14 Score=53.81 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=23.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
....|+|+|.||||||+.++.++..+-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999988754
No 67
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.35 E-value=0.16 Score=51.44 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+.|.|++|||||+..|.+...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 667899999999999999999999988
No 68
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.33 E-value=0.22 Score=51.19 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=28.1
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
.....+..+....|+|+|++|+|||+.++.+.+.+..
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3344444555556999999999999999999887743
No 69
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.27 E-value=0.13 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.9
Q ss_pred EEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
-|+|+|-+|||||+.++.+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999998864
No 70
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.26 E-value=0.26 Score=56.53 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=30.0
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
.+..+.. .....|+|+|.+|||||++.+.++.++..-.
T Consensus 114 ~l~~l~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~ 151 (356)
T 3jvv_A 114 VFKRVSD-VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK 151 (356)
T ss_dssp HHHHHHH-CSSEEEEEECSTTSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHh-CCCCEEEEECCCCCCHHHHHHHHHhcccCCC
Confidence 3455543 3445999999999999999999999987653
No 71
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.21 E-value=0.076 Score=54.51 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=24.7
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
+.|.|.|+||||||+.++.++.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578899999999999999999999865
No 72
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.16 E-value=0.18 Score=51.78 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=24.8
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
..|.|+|.||||||+.+..++.+|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 4689999999999999999999998654
No 73
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.16 E-value=0.11 Score=55.16 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+.+.|.|+||||||+..+.++..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998866
No 74
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.93 E-value=0.15 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~ 276 (1167)
...|+|+|+|||||||.+..+++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999998887
No 75
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.88 E-value=0.28 Score=54.35 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=23.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.....|||+|.||||||+.++.+.+.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999997754
No 76
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.82 E-value=0.23 Score=56.26 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=29.4
Q ss_pred hcCceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 250 ~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
...+...|.|.|+||||||++++.+..++...++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g 158 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF 158 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3467899999999999999999999999876554
No 77
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.79 E-value=0.14 Score=51.34 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..|+|+|.||||||+.++.+-..|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999998886654
No 78
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.77 E-value=0.32 Score=50.48 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=25.0
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
.+.+..|+|+|++|+|||+.++.+.+.+..
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344568999999999999999999887753
No 79
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.74 E-value=0.2 Score=51.36 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=23.4
Q ss_pred EEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 257 IIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
|+|+|-+|||||+.++.+.++|...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999886643
No 80
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.72 E-value=0.19 Score=51.53 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCChhhHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~ 276 (1167)
+.|+|.|.||||||+.++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999865
No 81
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.69 E-value=0.14 Score=50.85 Aligned_cols=19 Identities=47% Similarity=0.770 Sum_probs=17.8
Q ss_pred EEEEeCCCCCChhhHHHHH
Q 001063 256 SIIISGESGAGKTETAKIA 274 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~i 274 (1167)
-|+|+|.+|||||+.++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 82
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.69 E-value=0.19 Score=51.15 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...|+|+|.+|||||+.++.+-+.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998776
No 83
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.64 E-value=0.24 Score=55.38 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=32.6
Q ss_pred CchhHHHHHHHHHHHhcC--ceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 235 PHVYAITDTAIREMIRDE--VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 235 PHiyavA~~Ay~~m~~~~--~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
.|..+. .+.+.+.... ...+|+|+|++|+|||+.++.+.+++...
T Consensus 18 ~~~~a~--~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 18 GNRLAY--EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp TTHHHH--HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred cHHHHH--HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 454443 3344454443 46789999999999999999999988654
No 84
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.46 E-value=0.29 Score=54.74 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=25.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.....|.|+|.||||||+.++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999988875
No 85
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.41 E-value=0.23 Score=50.49 Aligned_cols=26 Identities=42% Similarity=0.512 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
....|+|+|.+|||||+.++.+.+.|
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998776
No 86
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.39 E-value=0.089 Score=54.83 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.9
Q ss_pred EEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
-|+|.|.||||||+.++.+.++|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999864
No 87
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.26 E-value=0.22 Score=56.04 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=26.2
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
......|.|.|.||||||+.++.|...|..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 456789999999999999999999887764
No 88
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.25 E-value=0.19 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.7
Q ss_pred EEEEeCCCCCChhhHHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1167)
-|+|.|.+|||||+.++.+.++|-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999988774
No 89
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.24 E-value=0.2 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhhHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1167)
.|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999987765
No 90
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.23 E-value=0.29 Score=50.01 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=26.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
....|+|.|.+|||||+.++.+..+|...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~ 41 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEG 41 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999987644
No 91
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.15 E-value=0.22 Score=57.47 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=27.3
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
-...+.|+|+|+||||||++.+.++.++..-
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 3567889999999999999999999998764
No 92
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.14 E-value=0.21 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChhhHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1167)
.|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 93
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.14 E-value=0.24 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.1
Q ss_pred ceEEEEEeCCCCCChhhHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKI 273 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~ 273 (1167)
....+.|.|+||||||+.+|.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 467899999999999999997
No 94
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.13 E-value=0.2 Score=52.65 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+..|.|.|.||||||+.++.+...+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 95
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.03 E-value=0.34 Score=58.75 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=26.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
.+.+.|+|.|.||||||+.++.|...|...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 4578899999999999999999998886543
No 96
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.98 E-value=0.41 Score=52.06 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.4
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.....+|+|+|++|+|||+.++.+.+.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 5668899999999999999999887763
No 97
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.80 E-value=0.3 Score=54.65 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=26.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
....|.|.|++|||||++++.+..++..-+|
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g 129 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT 129 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999998876443
No 98
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.60 E-value=0.23 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhhHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1167)
.|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999998766
No 99
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.47 E-value=0.17 Score=53.70 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=16.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHH-HHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAM-QYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il-~yL 278 (1167)
..+.|.|+|.||||||+.++.+. ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35689999999999999999998 664
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.41 E-value=0.27 Score=55.05 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=26.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
..+.|.|.|.||||||++++.+..++..-+|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g 131 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK 131 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 5689999999999999999999998875443
No 101
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.37 E-value=0.15 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
.....|.|.|.+|||||+.++.+..+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34689999999999999988887554
No 102
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.37 E-value=0.22 Score=50.59 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..-|+|+|.+|||||+.++.+.+.|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 103
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.32 E-value=0.25 Score=49.97 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhhHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1167)
.|+|+|.+|||||+.++.+-+.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 49999999999999999987765
No 104
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.29 E-value=0.24 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEeCCCCCChhhHHHHHHHHH
Q 001063 257 IIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1167)
|+|+|.+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999997765
No 105
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.22 E-value=0.3 Score=52.54 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.....|-|+|.+|||||+.+|.+...|
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356788999999999999999998876
No 106
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.22 E-value=0.27 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCChhhHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~ 276 (1167)
..|+|+|.+|||||+.++.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4699999999999999999876
No 107
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.14 E-value=0.43 Score=54.14 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=28.9
Q ss_pred HHHHHHHhcCceE--EEEEeCCCCCChhhHHHHHHHHHH
Q 001063 243 TAIREMIRDEVNQ--SIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 243 ~Ay~~m~~~~~~Q--sIiisGESGaGKTe~~K~il~yLa 279 (1167)
.+.........+. +|+|+|++|+|||+.++.+.+.+.
T Consensus 31 ~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 31 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444555556667 999999999999999999887654
No 108
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.06 E-value=0.46 Score=54.85 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHHHHH-hcCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 234 SPHVYAITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 234 ~PHiyavA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
-|++......++..+. .-.....|+|.|.+|||||+.++.+...+
T Consensus 148 ~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 148 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3677777777887774 34567899999999999999999998754
No 109
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.00 E-value=0.27 Score=50.09 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=22.9
Q ss_pred EEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
-|+|+|-+|||||+.++.+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK 27 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 38999999999999999999888643
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.91 E-value=0.41 Score=54.33 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
..+...+...+...+|+|+|++|+|||+.++.+.+.+...
T Consensus 33 ~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 33 AIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp HHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3455566667778899999999999999999999887653
No 111
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.89 E-value=0.27 Score=50.83 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.9
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
..-|+|.|-+|||||+.++.+.+.|.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999988764
No 112
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.82 E-value=0.6 Score=50.19 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+=-|+|+|.+|||||+.++.+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456679999999999999999998876
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.81 E-value=0.36 Score=54.49 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=33.3
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
+.+..+..+.+-+|+|+|.+|.|||.+++.+++-|...+
T Consensus 35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~ 73 (318)
T 3te6_A 35 PIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSS 73 (318)
T ss_dssp HHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 445566788999999999999999999999999997543
No 114
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.75 E-value=0.21 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
..+..|+|.||+|+|||..++.+-+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4567799999999999999887643
No 115
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.73 E-value=0.25 Score=50.62 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=23.1
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
..-|+|+|.+|||||+.++.+.++|-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988873
No 116
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.59 E-value=0.26 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.-.|+|+|.+|||||+.++.+-+.|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 117
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.58 E-value=0.34 Score=53.56 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=27.9
Q ss_pred HHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
...++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 34455555555699999999999999999998874
No 118
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.57 E-value=0.29 Score=50.51 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhhHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1167)
.|.|+|.+|||||+.++.+-+.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999987765
No 119
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.51 E-value=0.26 Score=53.35 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
....|.|.|.||||||+.+|.+.+.|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998765
No 120
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.50 E-value=0.4 Score=52.66 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=24.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+.+|+|.|++|+|||+.++.+.+.+
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998776
No 121
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.50 E-value=0.26 Score=51.08 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=24.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
..-|+|+|-+|||||+.++.+.++|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999988765
No 122
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.40 E-value=0.37 Score=50.37 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=26.1
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
..+.++|.|++|||||+.++.++..++..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~ 52 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGD 52 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence 4578999999999999999999987775443
No 123
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.32 E-value=0.41 Score=54.94 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=34.9
Q ss_pred chhHHHHHHHHHHHhc-----------CceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 236 HVYAITDTAIREMIRD-----------EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 236 HiyavA~~Ay~~m~~~-----------~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
.+..+.......++.. .....|.|.|++|||||++++.+..++..-+|
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G 186 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT 186 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCC
Confidence 4555555555555432 24688999999999999999999998876443
No 124
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.28 E-value=0.31 Score=54.66 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=28.7
Q ss_pred HHHHHH-hcCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 244 AIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 244 Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+.+.+- .-...++|.|.|+||||||+.++.|+.++
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 444442 33667999999999999999999999998
No 125
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.16 E-value=0.37 Score=48.96 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+--|+|.|.+|||||+.++.+.+.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999988765
No 126
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.13 E-value=0.21 Score=51.97 Aligned_cols=26 Identities=38% Similarity=0.291 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...-|.|+|.||||||+.++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999998886643
No 127
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.08 E-value=0.26 Score=51.57 Aligned_cols=22 Identities=23% Similarity=0.438 Sum_probs=20.0
Q ss_pred EEEeCCCCCChhhHHHHHHHHH
Q 001063 257 IIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1167)
|+|+|.+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999987765
No 128
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.08 E-value=0.35 Score=52.61 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=25.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
..-|+|+|-+|||||+.++.+-++|...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 45799999999999999999999887543
No 129
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.00 E-value=0.15 Score=58.59 Aligned_cols=28 Identities=36% Similarity=0.601 Sum_probs=24.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
..+.|+|+|+||||||+..+.++.++-.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3568999999999999999999887653
No 130
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.86 E-value=0.38 Score=49.72 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.4
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+..|+|+|.+|||||+.++.+-++|
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456689999999999999999998877
No 131
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.82 E-value=0.34 Score=49.81 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
.+...|.|+|.+|||||+.++.+-+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999888664
No 132
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.81 E-value=0.25 Score=54.89 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.--|.|+|.||||||+.++.+.+.|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34699999999999999999887765
No 133
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.78 E-value=0.23 Score=50.23 Aligned_cols=25 Identities=40% Similarity=0.468 Sum_probs=17.4
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..-|+|+|.+|||||+.++.+-+.|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999886654
No 134
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.77 E-value=0.25 Score=52.24 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+..-|+|.|-+|||||+.++.+.+.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999988765
No 135
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.75 E-value=0.48 Score=53.14 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHh--------cCceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 237 VYAITDTAIREMIR--------DEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 237 iyavA~~Ay~~m~~--------~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
+..+.......++. ......|+|.|.+|||||++++.+..+++..++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~ 133 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK 133 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC
Confidence 44444444444442 234678999999999999999999999886543
No 136
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.70 E-value=0.37 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.+..|+|.|++|+|||+.++.+...+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 35679999999999999999887654
No 137
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.69 E-value=0.31 Score=51.35 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.-|+|.|.+|||||+.++.+.+.|-
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988774
No 138
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.66 E-value=0.33 Score=50.48 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
+.|.|.|.+|||||+..+.++.++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4588999999999999999999887
No 139
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.62 E-value=0.42 Score=50.69 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
...+.+.|.|++|||||+.++.++....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999986544
No 140
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.59 E-value=0.27 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
...+.+.|.|+||||||+..|.++-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3467899999999999999888753
No 141
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=86.59 E-value=3.9 Score=35.07 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=43.2
Q ss_pred cccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCcccCC
Q 001063 112 TSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSAN 165 (1167)
Q Consensus 112 ~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~n 165 (1167)
.+|-+ +..|.+...+|.|-+|+|+....+...|..+|.....+...++....
T Consensus 14 ~~~~~--geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi~kl~ 65 (69)
T 2xk0_A 14 VTYAL--QEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKLG 65 (69)
T ss_dssp CCCCT--TCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEECTTTEECSS
T ss_pred ccccc--CCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeeeHHHHHhhc
Confidence 34444 45899999999999999999888999999999999999888776543
No 142
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.56 E-value=0.46 Score=56.66 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=38.1
Q ss_pred CchhHHHHHHHHHHHhc---------CceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 235 PHVYAITDTAIREMIRD---------EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 235 PHiyavA~~Ay~~m~~~---------~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
-.++.+-......++.. ...+.|.|.|.||||||++++.|..++..-+|
T Consensus 265 ~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G 322 (503)
T 2yhs_A 265 EALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK 322 (503)
T ss_dssp GGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC
Confidence 35677766677666642 34689999999999999999999998876544
No 143
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.55 E-value=0.32 Score=50.96 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
..+.+.|.|+||||||+.++.++-.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999999876543
No 144
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=86.33 E-value=0.3 Score=52.87 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+..|+|+|.||||||+.++.+.+.|
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 446789999999999999999886654
No 145
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.31 E-value=0.4 Score=51.34 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.5
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+..|+|.|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999987765
No 146
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.30 E-value=0.37 Score=49.94 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=25.2
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
++--|+|+|-+|||||+.++.+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999888653
No 147
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.23 E-value=0.55 Score=55.30 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCc-eEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 242 DTAIREMIRDEV-NQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 242 ~~Ay~~m~~~~~-~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
..+...+..... ..+++|.|++|+|||+.++.+.+++...
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 344445554433 7899999999999999999999888654
No 148
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.01 E-value=0.33 Score=52.83 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...|+|.|.||||||+.++.+...|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998865
No 149
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=85.87 E-value=0.28 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+--|+|+|-+|||||+.++.+.+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999987766
No 150
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.86 E-value=0.41 Score=48.94 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
....|+|+|-+|||||+.++.+-+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999988776
No 151
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=85.70 E-value=0.43 Score=49.31 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...-|+|+|-+|||||+.++.+.+.|
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999988765
No 152
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.65 E-value=0.6 Score=52.68 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=27.4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
..+.|.|+|.+|+|||+++..+..+|+..++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999987554
No 153
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.58 E-value=0.74 Score=50.72 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=27.0
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
.....+|+|.|++|+|||+.++.+.+++...+
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 34566899999999999999999999887643
No 154
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=85.54 E-value=0.86 Score=55.19 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=34.7
Q ss_pred CCCCCchhH---HHHHHHHHHH-hcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 231 SIESPHVYA---ITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 231 ~~~~PHiya---vA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
...+||-|. |+......+. .......|+|+|-+|||||+.++.+-+.|..
T Consensus 345 g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 345 GRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 344677776 5533333321 2334578999999999999999999888765
No 155
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.46 E-value=0.35 Score=58.10 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.+.|+|+|++|||||++.+.++.++.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34599999999999999999887763
No 156
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.39 E-value=0.42 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChhhHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1167)
-|+|+|.+|||||+.++.+.+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 48999999999999999987765
No 157
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.32 E-value=0.63 Score=52.45 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=28.0
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.....+..++-..++++|++|+|||+.++.+.+.|.
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 344445555444499999999999999999999875
No 158
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.27 E-value=0.31 Score=55.04 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=28.6
Q ss_pred HHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 247 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
.+...+..++|+|+|++|+|||+.++.+.+.+...
T Consensus 38 ~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 38 PLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp GGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 33345678899999999999999999998877653
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.27 E-value=0.98 Score=50.00 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+..|+|+|++|+|||+.++.+.+.+
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999999999999998765
No 160
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.20 E-value=0.47 Score=50.29 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
..-|+|.|.+|||||+.++.+.++|...+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999997543
No 161
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.19 E-value=0.52 Score=51.91 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=23.3
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
...|+|.|++|+|||+.++.+.+.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 46899999999999999999888774
No 162
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.04 E-value=0.38 Score=54.10 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~y 277 (1167)
=..++|+|.||||||+..++++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 357899999999999999888765
No 163
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.02 E-value=0.69 Score=52.32 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=23.4
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.+|+|+|++|+|||..++.+.+.+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 7999999999999999999988875
No 164
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.91 E-value=0.43 Score=49.99 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.7
Q ss_pred EEEeCCCCCChhhHHHHHHHHH
Q 001063 257 IIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1167)
|+|+|.+|||||+.++.+.+.|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 165
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.86 E-value=0.47 Score=51.10 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=22.9
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
+-.|.|.|.||||||+.++.+.+.|-
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.86 E-value=0.54 Score=55.52 Aligned_cols=86 Identities=22% Similarity=0.264 Sum_probs=47.0
Q ss_pred HHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHccCCCCcchhhhhhhHHHHhhcCcccCCCCCCCcccceEEEE
Q 001063 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIH 322 (1167)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 322 (1167)
...+.++..+.-.+|||.|++|+|||+.++.+.+.+..--. .+...-.....+-+.|..|.+.. .+|+..-|.
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~--~l~a~~~~~~~ir~~~~~a~~~~-----~~~~~~iLf 111 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVE--RISAVTSGVKEIREAIERARQNR-----NAGRRTILF 111 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE--EEETTTCCHHHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE--EEEeccCCHHHHHHHHHHHHHhh-----hcCCCcEEE
Confidence 35566666677789999999999999999998877532100 00000001122333444443321 145566777
Q ss_pred EcCCCceeeeeee
Q 001063 323 FSETGKISGANIQ 335 (1167)
Q Consensus 323 F~~~g~i~Ga~i~ 335 (1167)
+|+-+.+......
T Consensus 112 IDEI~~l~~~~q~ 124 (447)
T 3pvs_A 112 VDEVHRFNKSQQD 124 (447)
T ss_dssp EETTTCC------
T ss_pred EeChhhhCHHHHH
Confidence 8877777654433
No 167
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.83 E-value=0.34 Score=54.77 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=26.6
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
.....+|+|+|++|+|||+.++.+.+.+..
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 567889999999999999999999888754
No 168
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.73 E-value=0.39 Score=50.29 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCChhhHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~ 276 (1167)
+-.|+|+|.+|||||+.++.+-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999888755
No 169
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=84.71 E-value=0.86 Score=59.04 Aligned_cols=19 Identities=32% Similarity=0.127 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCCHHHHHHh
Q 001063 451 GLITVAKLIGCDIGELKLA 469 (1167)
Q Consensus 451 ~l~~aa~LLgv~~~~L~~a 469 (1167)
.+..|-..||++.++....
T Consensus 319 ~~~~Am~~lGfs~~e~~~I 337 (1052)
T 4anj_A 319 RMCTAMKKIGLDDEEKLDL 337 (1052)
T ss_dssp HHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH
Confidence 4666778899998876554
No 170
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.71 E-value=0.41 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+..|+|.|++|+|||+.++.+...+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4459999999999999999987765
No 171
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=84.64 E-value=0.41 Score=49.65 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.7
Q ss_pred EEEEeCCCCCChhhHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~ 276 (1167)
.|.|+|.+|||||+.++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988865
No 172
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=84.50 E-value=0.79 Score=55.87 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=33.6
Q ss_pred CCCchhH---HHHHHHHHHH-hcCceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 233 ESPHVYA---ITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 233 ~~PHiya---vA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
.+||-|. |+......+. .......|+|+|-||||||+.++.+-+.|...
T Consensus 371 ~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~ 423 (573)
T 1m8p_A 371 HIPEWFSYPEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQ 423 (573)
T ss_dssp CCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CCCcccccccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhccc
Confidence 3555544 4433332221 34456789999999999999999998888754
No 173
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=84.48 E-value=0.37 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChhhHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~ 276 (1167)
.|.|+|.+|||||+.++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 489999999999999999877
No 174
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.24 E-value=0.52 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChhhHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1167)
-|+|.|.+|||||+.++.+.++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998877
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.22 E-value=0.43 Score=53.73 Aligned_cols=36 Identities=11% Similarity=0.277 Sum_probs=26.0
Q ss_pred HHHHHH-hcCceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 244 AIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 244 Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
+.+..+ ..++...++|+|++|+|||+.++.+...|.
T Consensus 25 ~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 25 FLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp HHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred HHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 333443 333333399999999999999999988664
No 176
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=84.18 E-value=0.45 Score=57.11 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=35.4
Q ss_pred CCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 234 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
.|+|..+...+|..-. +....|+|+|-||||||+.++.+-+.|..
T Consensus 377 rpeV~~vLr~~~~~~~--~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPRP--KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCGG--GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhccccc--ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3778777777763322 33478999999999999999999999876
No 177
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.15 E-value=0.48 Score=52.06 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.+.+|+|.|++|+|||+.++.+.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46899999999999999999886643
No 178
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.96 E-value=1.3 Score=55.74 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=42.7
Q ss_pred CCCCCCcHHHHHHhhcCCCCC-CchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 214 KKVPLYGNYYIEAYKSKSIES-PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 214 k~l~iY~~~~~~~Y~~~~~~~-PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
..+.-|+.+..+.|+....++ ..-=..... ...++..+....++|.|++|+|||..++.+.+.+..
T Consensus 167 ~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~-l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 167 ERLENFTTNLNQLARVGGIDPLIGREKELER-AIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp --CCSSSCBHHHHHHTTCSCCCCSCHHHHHH-HHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHhHhHHHHHhcCCCCCccCCHHHHHH-HHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345567777778887655443 110011112 333445567788999999999999999999988754
No 179
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.95 E-value=0.56 Score=49.74 Aligned_cols=28 Identities=39% Similarity=0.666 Sum_probs=24.9
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
--|+|.|.+|||||+.++.+.++|...+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4699999999999999999999997644
No 180
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=83.88 E-value=0.48 Score=51.13 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
...+.+.|.|+||||||+..|.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568899999999999999998865543
No 181
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.78 E-value=0.62 Score=50.34 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.+..|+|.||+|+|||+.++.+-+++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 35789999999999999988876654
No 182
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.78 E-value=0.45 Score=51.25 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=22.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+.|.|+||||||+..|.++-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999886443
No 183
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=83.72 E-value=0.43 Score=51.75 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.2
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.++-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578899999999999999987544
No 184
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.71 E-value=12 Score=34.04 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=57.4
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001063 949 GNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 1028 (1167)
Q Consensus 949 ~~~~~el~~~~~~l~~Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~lqkq~~~Lq~~l~~lk~~ 1028 (1167)
.+..+++..+...+..++..+.+.+....+++..+..|.++...+..++.+.+++... +.++...|+..+..++..
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~----L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEE----LLSKNYHLENEVARLKKL 85 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3455677778888889999999999999999999998888888887776665555433 345555666667666665
Q ss_pred cc
Q 001063 1029 LA 1030 (1167)
Q Consensus 1029 Le 1030 (1167)
|+
T Consensus 86 l~ 87 (89)
T 3bas_A 86 VG 87 (89)
T ss_dssp HT
T ss_pred hh
Confidence 54
No 185
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.62 E-value=0.69 Score=52.22 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.5
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
+-.|-|+|.||||||+.++.+...|..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 347889999999999999999888764
No 186
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=83.61 E-value=0.45 Score=51.96 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=22.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+.|.|+||||||+..|.++-.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456889999999999999999986543
No 187
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=83.61 E-value=0.59 Score=50.44 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=25.9
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
..-|+|.|.+|||||+.++.+.++|...+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 56899999999999999999999997644
No 188
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.59 E-value=0.66 Score=51.96 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=28.2
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
....++..+....++|+|++|+|||+.++.+.+.+..
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444455554344999999999999999999988753
No 189
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=83.57 E-value=0.53 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+.+.|.|+||||||+..|.+.-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 788899999999999999876543
No 190
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.55 E-value=0.73 Score=48.59 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=25.4
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
++.++ ...+.+.|.|+||||||+..|.+.-.
T Consensus 15 ~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 15 YVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45554 34678999999999999999999876
No 191
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=83.55 E-value=0.59 Score=51.40 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=27.3
Q ss_pred HHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
...++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 29 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 29 LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp HHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 33444445555699999999999999999998874
No 192
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.55 E-value=0.71 Score=49.30 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
...-|+|.|.+|||||+.++.+.++|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999999875
No 193
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.50 E-value=0.24 Score=48.69 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1167)
.+..|+|.||+|+|||..++.+-
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCcEEEECCCCccHHHHHHHHH
Confidence 45679999999999998877653
No 194
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.39 E-value=0.64 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.3
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.--|+|.|-+|||||+.++.+-++|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4469999999999999999998876
No 195
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=83.37 E-value=0.9 Score=48.33 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHH-HHHHH
Q 001063 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM-QYLAA 280 (1167)
Q Consensus 237 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il-~yLa~ 280 (1167)
+|.+-..++..+.. ++.++|+|++|||||+....++ ..+..
T Consensus 62 ~~~~q~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~~~~~~~ 103 (235)
T 3llm_A 62 VKKFESEILEAISQ---NSVVIIRGATGCGKTTQVPQFILDDFIQ 103 (235)
T ss_dssp GGGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHHhcchhh
Confidence 44555556655544 4789999999999998776654 44433
No 196
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=83.36 E-value=1.1 Score=50.69 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=25.5
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
.+.+.+++|+|++|+|||+.++.+.+.+..
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444678999999999999999999888753
No 197
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=83.17 E-value=0.54 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.++-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999988654
No 198
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.15 E-value=0.62 Score=50.20 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
..--|.|+|.+|||||+.++.+-+.|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345799999999999999998877654
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=83.03 E-value=1.4 Score=52.30 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=38.5
Q ss_pred CCcHHHHHHhhcCCCCC-CchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 218 LYGNYYIEAYKSKSIES-PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 218 iY~~~~~~~Y~~~~~~~-PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
-|+.+..+.|+....++ -.-=..-.. ...++..+....+||.|++|.|||..++.+.+.+..
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~-l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQR-VIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHH-HHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHH-HHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 45666666666544332 000011122 223334456678999999999999999999988754
No 200
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.99 E-value=1.1 Score=50.63 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=24.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.....++|.|++|+|||+.++.+...+
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345789999999999999999999887
No 201
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.95 E-value=0.58 Score=50.98 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=22.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+.+|+|.|++|+|||+.++.+.+.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 457789999999999999998886543
No 202
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=82.88 E-value=0.58 Score=52.61 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~y 277 (1167)
...|+|+|+||+|||+++..++..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 579999999999999999988874
No 203
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=82.86 E-value=0.58 Score=51.31 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
...+.+.|.|+||||||+..|.++-.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999988654
No 204
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=82.82 E-value=0.51 Score=51.93 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+.|.|+||||||+..|.|+-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999886543
No 205
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=82.73 E-value=0.51 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
...+.+.|.|+||||||+..|.+.-
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3467889999999999999988743
No 206
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=82.68 E-value=0.47 Score=52.35 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.++-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4578899999999999999988543
No 207
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.67 E-value=0.63 Score=49.87 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
+.--|+|.|.+|||||+.++.+.++|...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 35679999999999999999999998754
No 208
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=82.66 E-value=0.52 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCChhhHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~ 276 (1167)
...|+|+|+||+||||++-.+++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999977665
No 209
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=82.63 E-value=13 Score=36.14 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhccccc
Q 001063 1013 KQMRSLQSSLSIAKKSLAIDD 1033 (1167)
Q Consensus 1013 kq~~~Lq~~l~~lk~~Le~~e 1033 (1167)
.....++..+..+++.+..++
T Consensus 104 ~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 104 AKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554443
No 210
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=82.61 E-value=0.45 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.7
Q ss_pred ceEEEEEeCCCCCChhhHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1167)
..+.+.|.|+||||||+..|.+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45678899999999999988874
No 211
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=82.59 E-value=0.49 Score=51.88 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 46788999999999999999886543
No 212
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=82.55 E-value=0.86 Score=48.13 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
....++|.|++|||||+.+..++..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~ 51 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMG 51 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 457899999999999999888877776544
No 213
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.54 E-value=0.59 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+..|+|.|++|+|||+.++.+...+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3459999999999999999987765
No 214
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.44 E-value=0.61 Score=51.76 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+..|+|.|++|+|||..++.+...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 215
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=82.42 E-value=0.53 Score=51.56 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
...+.+.|.|+||||||+..|.+.-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 3567899999999999999998743
No 216
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.03 E-value=0.28 Score=55.56 Aligned_cols=28 Identities=29% Similarity=0.656 Sum_probs=23.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
..+.|+|+|+||||||+..+.++.++..
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3468999999999999999999887643
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=81.79 E-value=0.63 Score=51.10 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
.|.|.|+||||||+..+.++..+...+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 578999999999999999988765433
No 218
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.76 E-value=0.56 Score=51.05 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.+.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999987543
No 219
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=81.71 E-value=0.84 Score=50.28 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
...+.++|.|++|||||+.++.+.-.++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999877764
No 220
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=81.69 E-value=1 Score=48.04 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=26.3
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
..+..-|+|.|-+|||||+.++.+.++|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345778999999999999999999999976
No 221
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=81.66 E-value=0.49 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.+.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999987543
No 222
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.56 E-value=1.1 Score=49.18 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=27.0
Q ss_pred HHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
...++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 34444454444499999999999999999998874
No 223
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=81.56 E-value=0.6 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
...+.+.|.|+||||||+..|.+.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3467889999999999999888743
No 224
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.54 E-value=0.58 Score=50.02 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+.+.|.|+||||||+..|.++-.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46788999999999999999886443
No 225
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.44 E-value=9.8 Score=41.26 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHhhhHHHHHHHhhh
Q 001063 1113 KELRRLKQMFEAWKKDYGSRLRETKVILNKL 1143 (1167)
Q Consensus 1113 ~El~~Lk~~f~~wkkd~~~rlr~~k~~l~~~ 1143 (1167)
.++..++..++.-+..+.+.+-+++..+..+
T Consensus 132 ~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 132 KEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777776666554
No 226
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.39 E-value=0.61 Score=50.85 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=20.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
...+.+.|.|+||||||+..|.+.-
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3467889999999999999888743
No 227
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.34 E-value=1 Score=50.37 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=23.0
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.....+|+|+|++|+|||+.++.+.+.+
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999885553
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.24 E-value=0.88 Score=50.69 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=25.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
...+.|+|.|.+|||||+++..+..+++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999885
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=81.15 E-value=1.1 Score=49.75 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=27.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
..+.|.|+|.+|+|||+++..+..+++..++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~ 127 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999987554
No 230
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.06 E-value=0.8 Score=52.76 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
.+..++|.|.||||||+.+|.++..+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~ 63 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG 63 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 577899999999999999999987765433
No 231
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.01 E-value=0.82 Score=51.33 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=23.2
Q ss_pred HHhcCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
|.....+.-|+|+|.||||||+.+..+.+.+
T Consensus 4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 4 ISKASLPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp ---CCCCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cccCCCCcEEEEECCCccCHHHHHHHHHHhC
Confidence 4444556789999999999999988876653
No 232
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.01 E-value=0.75 Score=47.74 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
...+.++|.|++|||||+.++.++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998865
No 233
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.00 E-value=10 Score=37.28 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001063 959 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 1027 (1167)
Q Consensus 959 ~~~l~~Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~lqkq~~~Lq~~l~~lk~ 1027 (1167)
..++.+++.+...+++.+.++++++..|+.++...+.+..+.+..+..+. +++..|+.++..++.
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~----~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELK----SEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34455566666666666666777777777766666666555554443333 333344444444433
No 234
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.98 E-value=0.74 Score=48.48 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
....|+|+|.||||||+.+..+++.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 357899999999999999888776543
No 235
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=80.98 E-value=0.86 Score=47.44 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...--|.|+|-+|||||+.++.+-+.|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345678899999999999999988865
No 236
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.98 E-value=0.85 Score=52.11 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.+.+|+|.|++|+|||+.++.+-+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999887665
No 237
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=80.88 E-value=1.7 Score=49.77 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=30.6
Q ss_pred HHHHHHHHHHH---hcCceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 239 AITDTAIREMI---RDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 239 avA~~Ay~~m~---~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.+++.+...+. ..++-.+|+|.|.+|||||+.++.+...|.
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45666665553 345556799999999999999998877654
No 238
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.87 E-value=0.49 Score=51.12 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.5
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.+..|+|.|++|+|||+.++.+.+.+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35679999999999999999987765
No 239
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=80.84 E-value=0.76 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=22.0
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..|+|.|-+|||||+.++.+-++|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998877
No 240
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=80.83 E-value=1.8 Score=50.91 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=27.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
.+..|+++|.+|||||+++..+..+|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~ 126 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY 126 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3678999999999999999999999987543
No 241
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.77 E-value=0.64 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.+.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999887543
No 242
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=80.67 E-value=0.75 Score=53.13 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.|.-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 4578899999999999999888544
No 243
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=80.59 E-value=0.87 Score=48.38 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
...|+|.|-+|||||+.++.+-++|.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 244
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=80.11 E-value=1.4 Score=50.25 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=29.2
Q ss_pred HHH-HHHHhc--CceEEEEE--eCCCCCChhhHHHHHHHHHHH
Q 001063 243 TAI-REMIRD--EVNQSIII--SGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 243 ~Ay-~~m~~~--~~~QsIii--sGESGaGKTe~~K~il~yLa~ 280 (1167)
.++ ..+... ...+.++| +|++|.|||+.++.+.+.+..
T Consensus 36 ~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 36 RIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp HHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 344 444445 56789999 999999999999988876653
No 245
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=80.10 E-value=1.7 Score=48.98 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=26.9
Q ss_pred hcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 250 ~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
..+-+.+++++|+.|.|||+.++.+.+.|..
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3455889999999999999999999998864
No 246
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.07 E-value=0.34 Score=54.33 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
...+.+.|.|+||||||+..|.++.++.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4578899999999999999999876653
No 247
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=79.96 E-value=2 Score=47.72 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=34.7
Q ss_pred HHHHhhcCCCC----CCchhHHHHHHHHHHHh-cCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 223 YIEAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 223 ~~~~Y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+.|+-.... ..|+. ...+.++. .+.+..++++|++|+|||+.++.+.+.+
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~----~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDK----ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHH----HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhhCCCCHHHHhCcHHHH----HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 45677655433 23442 33444444 3446788999999999999999987766
No 248
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=79.92 E-value=0.7 Score=50.23 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.+.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4577899999999999998887543
No 249
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.92 E-value=0.79 Score=51.32 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
....|+|.|++|+|||+.++.+.+.+
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCceEEEECCCCccHHHHHHHHHHhC
Confidence 34569999999999999998877654
No 250
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=79.80 E-value=0.72 Score=50.09 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.+.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4567899999999999999887543
No 251
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.74 E-value=1 Score=51.32 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.+..|+|.|++|+|||+.++.+-+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999987765
No 252
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=79.68 E-value=0.88 Score=48.38 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
..-|+|.|.+|||||+.++.+.++|.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999988874
No 253
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=79.68 E-value=0.72 Score=50.95 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.++-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578899999999999999887543
No 254
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=79.64 E-value=1.7 Score=48.63 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=25.5
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH-Hc
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA-AL 281 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa-~~ 281 (1167)
.+.|+|.|++|+|||..+..+...+. ..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~ 180 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK 180 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999888 54
No 255
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=79.38 E-value=1.1 Score=47.54 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.....|.|+|.+|||||+.++.+...|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999887755
No 256
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.33 E-value=21 Score=33.44 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 962 LAELQRRVLKAEAALREKEEENDILHQRLQQYES 995 (1167)
Q Consensus 962 l~~Lq~rv~kae~~l~eleeEn~~L~~el~~le~ 995 (1167)
+..|+.++..+|..+..+..+.+.|++++.+.+.
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444333
No 257
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=79.28 E-value=0.86 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.++|.|++|||||+.++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999887643
No 258
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.19 E-value=22 Score=34.52 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 001063 1015 MRSLQSSLSIA 1025 (1167)
Q Consensus 1015 ~~~Lq~~l~~l 1025 (1167)
+..|...+..+
T Consensus 113 ~~~Lk~~led~ 123 (129)
T 2fxo_A 113 CSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 259
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.04 E-value=0.87 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
--|+|+|.||||||+.++.+.+.|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999887663
No 260
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.01 E-value=16 Score=52.74 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001063 958 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 1031 (1167)
Q Consensus 958 ~~~~l~~Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~lqkq~~~Lq~~l~~lk~~Le~ 1031 (1167)
-...+.+++.++...+..+.++.++.+++.+++...+...++.++.+.+.++..+++.++.+...+.+++.|++
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~ 2005 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEK 2005 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777777777777777777766666665555444444445555555556656666655566665554
No 261
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.83 E-value=0.84 Score=50.87 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+..|+|.||+|+|||..++.+-+++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 456789999999999999998886654
No 262
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.68 E-value=1.1 Score=49.29 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCChhhHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~y 277 (1167)
..|+|+|-||||||+.++.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999988763
No 263
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=78.63 E-value=0.79 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~y 277 (1167)
.+.+.|.|+||||||+..|.++-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 567899999999999999988543
No 264
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=78.44 E-value=0.95 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+|.|++|||||+..+.|.--|
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999988765433
No 265
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.42 E-value=1 Score=54.02 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+|+|+|++|+|||+.++.+.+.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999998876
No 266
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=78.36 E-value=0.88 Score=51.96 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=23.6
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
.+.+.|.|+||||||+.+|.+..++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999887643
No 267
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=78.35 E-value=0.9 Score=52.07 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.|.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4577899999999999998887544
No 268
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=78.22 E-value=1 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
...+.+.|.|+||||||+..|.|.-
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 3467789999999999999888753
No 269
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=78.17 E-value=0.97 Score=48.22 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.9
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
+.-|+|.|-+|||||+.++.+.++|.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999988873
No 270
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=78.15 E-value=1 Score=47.06 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+..|+|+|.+|||||+.++.+-+.|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999999999999886654
No 271
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=78.13 E-value=2 Score=50.51 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=26.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
.+..|+++|.+|+|||+++-.+..||+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 468899999999999999999999998644
No 272
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=77.75 E-value=1.1 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.|.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 4578899999999999999887543
No 273
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=77.75 E-value=2.4 Score=53.30 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=37.5
Q ss_pred CCcHHHHHHhhcCCCCC-CchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 218 LYGNYYIEAYKSKSIES-PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 218 iY~~~~~~~Y~~~~~~~-PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
-|+.+..+.|+....++ ..-=..-.... .++..+..-.|||.|++|.|||..++.+.+.+..
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~-~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVI-EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHH-HHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHH-HHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 35555556665444332 11111112222 3334455667999999999999999999988854
No 274
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=77.66 E-value=18 Score=39.16 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001063 951 DSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 1027 (1167)
Q Consensus 951 ~~~el~~~~~~l~~Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~lqkq~~~Lq~~l~~lk~ 1027 (1167)
..+++..+..++..++.+...++..+.++.+....++..+..++..+.+.+..+......+...+.+++.++..+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~ 164 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK 164 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777777777766676666666666666666666666666666666555555544
No 275
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=77.65 E-value=0.85 Score=50.69 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+.|.|+||||||+..|.++-.+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356788999999999999999886543
No 276
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=77.43 E-value=1.2 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.4
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.+..|+|.|++|+|||..++.+.+.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999999887664
No 277
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=77.18 E-value=1.5 Score=51.29 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=27.2
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
....|+|.|.+|||||+++..+..+|+..++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~ 127 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 5688999999999999999999999986543
No 278
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.15 E-value=1.2 Score=49.32 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+.+-.|+|.|++|+|||+.++.+-+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998877
No 279
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.13 E-value=1.1 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+.+|+|.|++|+|||..++.+.+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999886543
No 280
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=77.04 E-value=1.1 Score=51.30 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.|.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4678899999999999998887543
No 281
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.03 E-value=1.1 Score=49.18 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+..|+|.|++|+|||+.+|.+...+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3449999999999999999887654
No 282
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=76.78 E-value=1.3 Score=48.65 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
+.--|+|+|-+|||||+.++.+-+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999988864
No 283
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=76.73 E-value=1.4 Score=46.44 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.5
Q ss_pred EEEeCCCCCChhhHHHHHHHHH
Q 001063 257 IIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1167)
|||.|..|||||+-++.|.+.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998876
No 284
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=76.63 E-value=1.2 Score=48.57 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
..+.++|.|++|||||+.+++++-.++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999999887554
No 285
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=76.51 E-value=1.2 Score=51.08 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
..+.+.|.|+||||||+..|.|.-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457889999999999999988753
No 286
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=76.51 E-value=2 Score=48.63 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=32.4
Q ss_pred HHHHHHHH-hcCceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 242 DTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 242 ~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
..+...+. .-.....|.|.|.+|||||+..+.++.++...++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 34444443 3467789999999999999999999998876544
No 287
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.48 E-value=0.99 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1167)
--|+|+|.||||||+.+..+.+.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 468999999999999988876654
No 288
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=76.32 E-value=1.2 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.|.-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4678899999999999998887544
No 289
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=76.29 E-value=1.9 Score=48.02 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=26.7
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
...|+++|.+|+|||+++..+..+++..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~ 127 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF 127 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 678999999999999999999999987544
No 290
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=76.28 E-value=2.1 Score=54.06 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 001063 894 HRAAVVIQRQIKSRVARQKLKNIKYSS 920 (1167)
Q Consensus 894 ~~AAi~IQ~~~R~~~~Rr~y~~~r~aa 920 (1167)
+++|+.||+.||||++|++|+++|+++
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777777777777766554
No 291
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=76.11 E-value=1.6 Score=52.82 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=26.5
Q ss_pred HHHHhcCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+........++|.|++|+|||+.++.+-..+
T Consensus 100 ~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 100 QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 333334457789999999999999999998887
No 292
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=75.97 E-value=2.4 Score=44.19 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=26.6
Q ss_pred HHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
+.+......--|+|.|.+|+|||+.+..++..+.
T Consensus 30 r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 30 RKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444455667899999999999999988887754
No 293
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.78 E-value=3.9 Score=41.84 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=35.9
Q ss_pred CCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHH
Q 001063 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI 273 (1167)
Q Consensus 211 NP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~ 273 (1167)
+.|..+++ +++..+.........|-.|. ..|+..++.. +.+++.+++|||||.+.-.
T Consensus 3 ~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 3 NEFEDYCL-KRELLMGIFEMGWEKPSPIQ--EESIPIALSG---RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp SSGGGSCC-CHHHHHHHHTTTCCSCCHHH--HHHHHHHHTT---CCEEEECCSSSTTHHHHHH
T ss_pred CChhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHccC---CCEEEECCCCCchHHHHHH
Confidence 34566654 46666666655544444333 4456555543 4599999999999987554
No 294
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=75.56 E-value=2.3 Score=49.18 Aligned_cols=47 Identities=19% Similarity=0.013 Sum_probs=42.8
Q ss_pred CchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
|.+..+.-+|..-+..-.+-|.+.|.|.||+|||+.++.|.++++.-
T Consensus 155 ~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 155 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp CCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 56778899999999999999999999999999999999999998764
No 295
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=75.51 E-value=1.3 Score=51.08 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
..+.+.|.|+||||||+..|+|.-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHc
Confidence 456788999999999999888753
No 296
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=75.44 E-value=1.8 Score=45.11 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=23.8
Q ss_pred EEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 257 IIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
|+|-|--|||||+-++.+.++|...|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 88999999999999999999998754
No 297
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.44 E-value=1.3 Score=49.60 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
....|+|.|++|+|||..++.+.+.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34789999999999999999887765
No 298
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=75.39 E-value=2.1 Score=44.40 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=23.7
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
....--|+|.|.+|||||+.+..++..+.
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33456799999999999999988887763
No 299
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=75.31 E-value=1.6 Score=46.46 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.+.--|+|.|..|||||+-++.|.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345578899999999999999998876
No 300
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=75.22 E-value=1.2 Score=51.55 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=23.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
...+.+.|.|+||||||+..++|.-++.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 3467899999999999999998865543
No 301
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=75.18 E-value=3.8 Score=46.03 Aligned_cols=62 Identities=18% Similarity=0.363 Sum_probs=41.6
Q ss_pred cCCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHH
Q 001063 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 210 vNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il 275 (1167)
+++|..+++ +++..+.........|..|. ..|+..++.. .+..+|+.+++|+|||.+.-+.+
T Consensus 4 ~~~f~~~~l-~~~l~~~l~~~~~~~~~~~Q--~~~i~~~~~~-~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 4 AKSFDELGL-APELLKGIYAMKFQKPSKIQ--ERALPLLLHN-PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCSSTTSCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHCS-SCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCHhhCCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHH
Confidence 477888876 45666555555544454444 4566666654 44779999999999998766543
No 302
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=75.05 E-value=1.3 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChhhHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1167)
-|+|+|.||||||+.+..+.+.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 58999999999999988876654
No 303
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=74.96 E-value=1 Score=52.57 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.2
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.....-|||+|-||||||+.++.+.+.+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999886644
No 304
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=74.86 E-value=0.99 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.0
Q ss_pred ceEEEEEeCCCCCChhhHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1167)
..+.+.|.|+||||||+..|.|.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHH
Confidence 45788999999999999988874
No 305
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=74.60 E-value=1.3 Score=50.01 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+..|+|+|.+|||||+.++.+.+.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3479999999999999988886654
No 306
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=74.55 E-value=1.5 Score=46.49 Aligned_cols=36 Identities=11% Similarity=0.388 Sum_probs=27.4
Q ss_pred HHHHHHHhc-CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 243 TAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 243 ~Ay~~m~~~-~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.+...++.. .+.-+|+|.|..|+|||+.+..+.++|
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 345555543 123479999999999999999998886
No 307
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.55 E-value=1.4 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+..|+|.|++|+|||..++.+.+.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4579999999999999999888765
No 308
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=74.54 E-value=1.5 Score=46.09 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhhHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1167)
-|+|||.+||||++.++.+...+
T Consensus 13 II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 13 VLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHc
Confidence 68899999999999999998855
No 309
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=74.43 E-value=2.8 Score=49.35 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=26.5
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
..++|+|..|+|||+.++.++.+|...+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 49999999999999999999999988654
No 310
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=74.30 E-value=1.3 Score=50.61 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..|...++.=.+.|.+.|.|.+|||||+..+.|+..+
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3577778777889999999999999999999998874
No 311
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=74.26 E-value=2.4 Score=52.02 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=25.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
+...|+|+|-||||||+.++.+-++|...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~ 79 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCH 79 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 56789999999999999999999998643
No 312
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=73.99 E-value=1.9 Score=47.94 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=25.1
Q ss_pred HHHHHhcCceEEEEEeCCCCCChhhHHHHHH
Q 001063 245 IREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il 275 (1167)
...+..--..+.+.|.|+||||||+..+.++
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 3444445567899999999999999999987
No 313
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=73.96 E-value=1.1 Score=53.21 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=27.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
...+.+.|.|.||||||+.+|+|..++...+|
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 35678999999999999999999998776554
No 314
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.42 E-value=45 Score=40.16 Aligned_cols=73 Identities=8% Similarity=0.082 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhc
Q 001063 957 VKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV---WQKQMRSLQSSLSIAKKSL 1029 (1167)
Q Consensus 957 ~~~~~l~~Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~---lqkq~~~Lq~~l~~lk~~L 1029 (1167)
...+.+.+++.+....++.+...+++..+++++++.++.+..+.|.+..++++. +++++..+..++..+++.+
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555555555555555555555555554444433 2233333444444444333
No 315
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=72.99 E-value=2.6 Score=44.35 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
..+.++|.|++|+|||..+-.++...+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~ 56 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999988776654433
No 316
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=72.90 E-value=1.5 Score=51.52 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=31.7
Q ss_pred HHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.|...++.=.+.|.+.|.|.||||||+..+.|..++
T Consensus 146 ~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 146 RAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 477788777889999999999999999999988875
No 317
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=72.79 E-value=4.4 Score=43.40 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=37.2
Q ss_pred cCCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHH-HHHHHHH
Q 001063 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLAA 280 (1167)
Q Consensus 210 vNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa~ 280 (1167)
+++|..+++ ++...+.........|..|. ..|+..++.. +.+|+.+++|||||.+.-+ +++.+..
T Consensus 42 ~~~f~~l~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~i~~~---~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 42 TKTFKDLGV-TDVLCEACDQLGWTKPTKIQ--IEAIPLALQG---RDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp HCCTGGGTC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHcCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHhCC---CCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 344555553 34444444444443444433 3355555543 5699999999999988654 3445544
No 318
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=72.62 E-value=2.2 Score=54.39 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=27.3
Q ss_pred HhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
+..+....++|.|++|+|||..++.+.+.+..
T Consensus 186 l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 186 LLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34556678999999999999999999999865
No 319
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=72.55 E-value=4.2 Score=41.52 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=35.4
Q ss_pred CCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHH-HHHHHH
Q 001063 213 FKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLA 279 (1167)
Q Consensus 213 ~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa 279 (1167)
|..+++ +++..+.........|..|. ..|+..++.. +.+++.+++|+|||.+.-. +++++.
T Consensus 3 f~~~~l-~~~l~~~l~~~~~~~~~~~Q--~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 3 FKDFPL-KPEILEALHGRGLTTPTPIQ--AAALPLALEG---KDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp GGGSCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred hhhcCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHcCC---CCEEEECCCCChHHHHHHHHHHHHHh
Confidence 334443 45555555554444444333 3455555543 4599999999999988443 445543
No 320
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=72.35 E-value=1.8 Score=51.57 Aligned_cols=29 Identities=28% Similarity=0.187 Sum_probs=24.4
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
+.+.|.|+||||||+..+.|.-.+..-+|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 78899999999999999999887754433
No 321
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=72.34 E-value=1.6 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1167)
-.|.|+|++|||||+.++.+-+.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 479999999999999999987765
No 322
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=72.20 E-value=4.5 Score=49.52 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=25.8
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
+..++|+|..|+|||++...++..|..+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999875
No 323
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=72.19 E-value=3.5 Score=52.06 Aligned_cols=59 Identities=25% Similarity=0.412 Sum_probs=36.8
Q ss_pred cCCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHH
Q 001063 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIA 274 (1167)
Q Consensus 210 vNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i 274 (1167)
+|||..+++ ++...+........|-.++ ..++..++.. ++.++|+|++|||||+....+
T Consensus 71 ~~~f~~~~l-~~~~~~~l~~r~~lP~~~q---~~~i~~~l~~--~~~vii~gpTGSGKTtllp~l 129 (773)
T 2xau_A 71 INPFTGREF-TPKYVDILKIRRELPVHAQ---RDEFLKLYQN--NQIMVFVGETGSGKTTQIPQF 129 (773)
T ss_dssp BCTTTCSBC-CHHHHHHHHHHTTSGGGGG---HHHHHHHHHH--CSEEEEECCTTSSHHHHHHHH
T ss_pred CCCccccCC-CHHHHHHHHHhhcCChHHH---HHHHHHHHhC--CCeEEEECCCCCCHHHHHHHH
Confidence 688888874 5555555544443342222 2333444443 578999999999999965555
No 324
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=72.09 E-value=1 Score=51.42 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|+||||||+..|.|.-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578899999999999999887543
No 325
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=72.04 E-value=15 Score=37.11 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 001063 1113 KELRRLKQMFEAWKKDYG 1130 (1167)
Q Consensus 1113 ~El~~Lk~~f~~wkkd~~ 1130 (1167)
-||+.|.++.+-=-+..+
T Consensus 143 ~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 143 YKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777777766555554
No 326
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=72.01 E-value=1.7 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
...+|+|.|++|+|||..++.+.+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999888554
No 327
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=71.79 E-value=2.5 Score=30.85 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhHHHHHHH
Q 001063 918 YSSIMIQSVIRGWLVRRCS 936 (1167)
Q Consensus 918 ~aai~iQs~~Rg~laRr~~ 936 (1167)
-++++||.+||+++.|+..
T Consensus 7 ~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4899999999999998764
No 328
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=71.50 E-value=9 Score=39.57 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=38.7
Q ss_pred ecCCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 209 avNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..++|..+++ +++..+.........|..|. ..|+..++.. ..+++.+++|+|||.+.-..+-.
T Consensus 12 ~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 12 HSSGFRDFLL-KPELLRAIVDCGFEHPSEVQ--HECIPQAILG---MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp --CCSTTSCC-CHHHHHHHHHTTCCCCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCHhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEECCCCCchhhhhhHHHHH
Confidence 3456887775 45666655554444454443 3455555543 33999999999999877655433
No 329
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=71.36 E-value=15 Score=32.74 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 968 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLS 1023 (1167)
Q Consensus 968 rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~lqkq~~~Lq~~l~ 1023 (1167)
....+..++++++.+|..|+.++..++.++.+...+-.....+++.-++.|..++.
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~ 62 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLF 62 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34445566777777888888888888877777776666666555555555544433
No 330
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=71.13 E-value=2.7 Score=46.49 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCChhhHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~y 277 (1167)
+.|+|+|+.|.|||+.++.+++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 79999999999999999888765
No 331
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=71.04 E-value=3.9 Score=42.46 Aligned_cols=61 Identities=25% Similarity=0.382 Sum_probs=34.7
Q ss_pred CCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHH-HHHHHHH
Q 001063 212 PFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETA-KIAMQYL 278 (1167)
Q Consensus 212 P~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~-K~il~yL 278 (1167)
.|..+++ ++.............|-.|. ..|+..++.. ..+|+.+++|+|||.+. -.+++++
T Consensus 15 ~f~~l~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 15 KFDDMEL-DENLLRGVFGYGFEEPSAIQ--QRAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CGGGGTC-CHHHHHHHHHHTCCSCCHHH--HHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ChhhcCC-CHHHHHHHHHCCCCCCcHHH--HHHHHHHhcC---CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 4555554 34455444443333333332 3455555543 34999999999999883 3344554
No 332
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=70.81 E-value=2 Score=45.71 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
+-.|.|+|++|||||+.++.+-+.|-
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999877663
No 333
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.74 E-value=2 Score=48.93 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=25.8
Q ss_pred HHHHHHhc--CceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 244 AIREMIRD--EVNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 244 Ay~~m~~~--~~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
....++.. ...+.+.|.|++|||||+.+++++-.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44455443 35688999999999999999888654
No 334
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=70.45 E-value=1.5 Score=53.55 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=24.2
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
...+.+.|.|+||||||+..|.++.++.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568899999999999999999987654
No 335
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=70.33 E-value=2.1 Score=30.26 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHhHHHHH
Q 001063 918 YSSIMIQSVIRGWLVRR 934 (1167)
Q Consensus 918 ~aai~iQs~~Rg~laRr 934 (1167)
.+|++||.+||+++.++
T Consensus 7 ~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 7 VSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 58999999999999875
No 336
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.04 E-value=2.2 Score=52.12 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.+++|.|++|+|||+.++.+...+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 6899999999999999999988664
No 337
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=69.73 E-value=3.4 Score=44.07 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
...-++|+|+.|+|||+.+-.++.-+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4578999999999999988776655544
No 338
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=69.67 E-value=4.7 Score=45.73 Aligned_cols=67 Identities=18% Similarity=0.349 Sum_probs=41.0
Q ss_pred EecCCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHH-HHHHH
Q 001063 208 VAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYL 278 (1167)
Q Consensus 208 iavNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yL 278 (1167)
..+.+|..+++ ++...+.........|..+. ..|+..++.. .++.+|+.+++|||||...-+ +++.+
T Consensus 22 ~~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 22 YSVKSFEELRL-KPQLLQGVYAMGFNRPSKIQ--ENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp CCSSCTGGGTC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHSS-SCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cccCCHhhCCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHhcC-CCCeEEEECCCCchHHHHHHHHHHHHh
Confidence 44566666664 44555554444444444443 3456665543 467899999999999988644 34444
No 339
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=69.53 E-value=2.1 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+|+|.|++|+|||..++.+-+.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 55778999999999999999888554
No 340
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=69.13 E-value=1.9 Score=51.89 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=26.9
Q ss_pred HHHHHHh--cCceEEEEEeCCCCCChhhHHHHHH-HHHHH
Q 001063 244 AIREMIR--DEVNQSIIISGESGAGKTETAKIAM-QYLAA 280 (1167)
Q Consensus 244 Ay~~m~~--~~~~QsIiisGESGaGKTe~~K~il-~yLa~ 280 (1167)
|...+.- =.+.+.++|.|+||||||+.+++++ .-+..
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4445443 1467899999999999999999963 44443
No 341
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=68.94 E-value=2.9 Score=50.25 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=26.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
.....|++.|-+|||||+.++.+.++|-..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 345689999999999999999999998654
No 342
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=68.83 E-value=37 Score=29.65 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 972 AEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLS 1023 (1167)
Q Consensus 972 ae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~lqkq~~~Lq~~l~ 1023 (1167)
+..++++++.+|..|+.++..++.++.+...+-.....+++.-++.|..++.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~ 56 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIF 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4556677777788888888888877777766666666555555555544433
No 343
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=68.44 E-value=3.5 Score=48.39 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=27.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
+....|+|+|.+|+|||+++-.+..+|+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999986
No 344
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=68.31 E-value=2.6 Score=43.03 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.1
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|||||+..+.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47899999999999877764
No 345
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.28 E-value=46 Score=30.67 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 958 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 1008 (1167)
Q Consensus 958 ~~~~l~~Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~e 1008 (1167)
...++.+|+.++.+..+.....+.+...+..+++.+...+-+.-.+|-...
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555666666666666666666666655444444433
No 346
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=68.21 E-value=1.4 Score=53.67 Aligned_cols=27 Identities=22% Similarity=0.557 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+.|.|+||||||+..|.++.++
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456889999999999999999986654
No 347
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=68.13 E-value=3.6 Score=47.07 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=27.3
Q ss_pred chhH-HHHHHHHHHHhcCceEEEEEeCCCCCChhhHH
Q 001063 236 HVYA-ITDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 236 Hiya-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 271 (1167)
.||. ++.......+..+.|-+|+--|.+|||||.|+
T Consensus 66 ~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 66 TVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred HHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 3454 34445556666788999999999999999886
No 348
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=68.11 E-value=2.3 Score=51.37 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
..+.+.|.|+||||||+..|+|.-.+.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 367789999999999999999876543
No 349
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=67.84 E-value=2 Score=52.47 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+.|.|+||||||+..|.++..+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456889999999999999999886543
No 350
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=67.71 E-value=2.9 Score=43.79 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.2
Q ss_pred EEEEeCCCCCChhhHHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1167)
-|+|-|--|||||+.++.+.++|.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999999999999984
No 351
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=67.57 E-value=2.1 Score=52.37 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=23.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+.|.|+||||||+..|.++.++
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 456899999999999999999886554
No 352
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=67.56 E-value=1 Score=48.70 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+..-|+|.|-.|||||+.++.+.++|
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999887776
No 353
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=67.54 E-value=4.8 Score=47.35 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.3
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
+.+|++.|++|+|||..++.+-+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 36899999999999999999988863
No 354
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=67.24 E-value=36 Score=31.13 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccc
Q 001063 1011 WQKQMRSLQSSLSIAKKSLAID 1032 (1167)
Q Consensus 1011 lqkq~~~Lq~~l~~lk~~Le~~ 1032 (1167)
+..+++.|+..+..+...+..+
T Consensus 66 l~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 66 LVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHTTSHHHHHHHHHHHTTC--
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666655443
No 355
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=67.18 E-value=75 Score=31.57 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 954 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 1010 (1167)
Q Consensus 954 el~~~~~~l~~Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~ 1010 (1167)
.+..++.++..++.++..++..+.++...+..+..++..++.+....|.++..++++
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777777777777777777777777777777777777777777666654
No 356
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=67.11 E-value=2.5 Score=43.02 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.2
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|||||+..+.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 57899999999999887764
No 357
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=66.74 E-value=4.3 Score=44.97 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1167)
+.|+|+|++|.|||+.++.+.+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 699999999999999999887765
No 358
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=66.45 E-value=2.7 Score=49.00 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=24.7
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
.++.++|.|.+|||||+..+.++..+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~ 80 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR 80 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999988888766553
No 359
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.32 E-value=73 Score=29.44 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 964 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEE 1009 (1167)
Q Consensus 964 ~Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee 1009 (1167)
.++..+..++.+..++++++..|..+++.++..+..++..+.....
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555566666666666666666555555554443
No 360
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=66.31 E-value=3.4 Score=48.80 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=25.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
.....|++.|-+|||||+.++.+.++|..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 44678999999999999999999998864
No 361
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=66.29 E-value=2.4 Score=48.17 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=21.1
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
+..--|+|+|.+|||||+.++.+.+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34468999999999999998877543
No 362
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=66.26 E-value=2.8 Score=49.09 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=20.0
Q ss_pred CceEE--EEEeCCCCCChhhHHHHHHH
Q 001063 252 EVNQS--IIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 252 ~~~Qs--IiisGESGaGKTe~~K~il~ 276 (1167)
..... |.|.|+||||||+..+.|+.
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 34556 89999999999999888753
No 363
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=65.89 E-value=3.3 Score=49.25 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
.+..|+|.|++|+|||..+|.+..
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 364
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=65.88 E-value=4.4 Score=49.25 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=26.1
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
++.++|+|..|+|||++.+.++.+|...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999988754
No 365
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.88 E-value=72 Score=30.39 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 958 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAK 1026 (1167)
Q Consensus 958 ~~~~l~~Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~lqkq~~~Lq~~l~~lk 1026 (1167)
.+..+..++.+.+.........+.+...|++.+......+.++|.++..+.+++.=-..-.+.++..++
T Consensus 46 ~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 46 LAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554555566666777777777666666666777666666654322223333444443
No 366
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=65.83 E-value=2.7 Score=49.41 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.6
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+|+|.|++|+|||..++.+.+.+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999887765
No 367
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=65.61 E-value=7.2 Score=40.90 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=40.5
Q ss_pred cCCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHH-HHHHHHH
Q 001063 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLAA 280 (1167)
Q Consensus 210 vNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa~ 280 (1167)
+.+|..+++ ++.............|..|. ..|+..++.. +.+|+.+++|+|||.+.-+ +++.+..
T Consensus 24 ~~~f~~~~l-~~~l~~~l~~~~~~~~~~~Q--~~~i~~~~~~---~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 24 ITRFSDFPL-SKKTLKGLQEAQYRLVTEIQ--KQTIGLALQG---KDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp CSBGGGSCC-CHHHHHHHHHTTCCBCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 345666664 45666665554444444433 4556555543 4599999999999998665 4555554
No 368
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=65.57 E-value=18 Score=33.55 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001063 968 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQ-----------------KMKSMEEVWQKQMRSLQSSLSIAKKSLA 1030 (1167)
Q Consensus 968 rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~-----------------k~~~~ee~lqkq~~~Lq~~l~~lk~~Le 1030 (1167)
.+..+..++..++.|+..|++++..++.++....- -.....+..++.++.||.+++.++..+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666777777777766666643100 0222234456778888888888888776
Q ss_pred ccc
Q 001063 1031 IDD 1033 (1167)
Q Consensus 1031 ~~e 1033 (1167)
.++
T Consensus 93 ~lE 95 (100)
T 1go4_E 93 AME 95 (100)
T ss_dssp TCC
T ss_pred HHh
Confidence 554
No 369
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=65.52 E-value=8.6 Score=42.58 Aligned_cols=61 Identities=23% Similarity=0.392 Sum_probs=36.6
Q ss_pred CCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 212 PFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 212 P~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
+|..+++ ++.............|..+. ..|+..++.. ++.+++.+++|+|||...-..+-.
T Consensus 7 ~f~~~~l-~~~~~~~l~~~g~~~~~~~Q--~~~i~~~~~~--~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 7 NFNELNL-SDNILNAIRNKGFEKPTDIQ--MKVIPLFLND--EYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CGGGSSC-CHHHHHHHHHHTCCSCCHHH--HHHHHHHHHT--CSEEEEECCSSSSHHHHHHHHHHH
T ss_pred chhhcCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHhCC--CCCEEEECCCCChHHHHHHHHHHH
Confidence 4556554 34444444444443343333 3456666654 357999999999999986654433
No 370
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=65.19 E-value=2.8 Score=50.62 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+-|.|++|||||+..|+|.-.+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456889999999999999999987654
No 371
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=65.11 E-value=3.4 Score=48.22 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...|.|.|+||||||+..+.++-.+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4478899999999999999886543
No 372
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.07 E-value=76 Score=28.27 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 963 AELQRRVLKAEAALREKEEENDILHQRLQQ 992 (1167)
Q Consensus 963 ~~Lq~rv~kae~~l~eleeEn~~L~~el~~ 992 (1167)
.+|+.++..+-..+.-++.++..|+++...
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333344444443333
No 373
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=64.82 E-value=4.1 Score=46.53 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=29.0
Q ss_pred HHHHHHh-cC--ceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 244 AIREMIR-DE--VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 244 Ay~~m~~-~~--~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
.+..++. .+ ....++|.|++|+|||+.+.+++..++..+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g 89 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG 89 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4444444 22 357899999999999999999988776543
No 374
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=64.54 E-value=3.3 Score=52.78 Aligned_cols=25 Identities=40% Similarity=0.474 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.+|+|.|++|+|||+.++.+-+++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6999999999999999999988775
No 375
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=64.48 E-value=3.1 Score=46.12 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
..+.+.|.|+||||||+..+.++.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc
Confidence 467899999999999998887753
No 376
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=64.47 E-value=3.6 Score=43.90 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
.+.-.++++|-.|+|||+.+..+..+|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3456788899999999999999999998
No 377
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=64.29 E-value=3 Score=51.13 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
...+.+.|.|+||||||+..|+|.-.+.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 3578899999999999999998876543
No 378
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=64.17 E-value=6.5 Score=40.76 Aligned_cols=62 Identities=24% Similarity=0.439 Sum_probs=37.9
Q ss_pred CCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHH-HHHHH
Q 001063 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYL 278 (1167)
Q Consensus 211 NP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yL 278 (1167)
..|..+++ ++...+.........|..|. ..|+..++.. +.+++.+++|||||.+.-+ +++.+
T Consensus 4 ~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~l~~l 66 (219)
T 1q0u_A 4 TQFTRFPF-QPFIIEAIKTLRFYKPTEIQ--ERIIPGALRG---ESMVGQSQTGTGKTHAYLLPIMEKI 66 (219)
T ss_dssp CCGGGSCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHHT---CCEEEECCSSHHHHHHHHHHHHHHC
T ss_pred CCHhhCCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEECCCCChHHHHHHHHHHHHH
Confidence 45666664 56666666655544444433 3455555543 4589999999999988544 33443
No 379
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=64.10 E-value=5.4 Score=44.42 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.9
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.++..++..++|++|+.|.|||++++.+.+.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4455666666889999999999999999998774
No 380
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=63.96 E-value=3.7 Score=39.92 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=17.2
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|+|||+....++
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999877664
No 381
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=63.86 E-value=3.3 Score=47.37 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+.+.|.|.||||||+..+.++-.
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcc
Confidence 4678999999999999998888643
No 382
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=63.82 E-value=2.9 Score=48.88 Aligned_cols=25 Identities=24% Similarity=0.435 Sum_probs=19.4
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il 275 (1167)
.+-+=.|+|.|+||||||+..+.++
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHh
Confidence 3445568999999999999877664
No 383
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=63.70 E-value=1.9 Score=52.52 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+.|.|+||||||+..|.++.++
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456889999999999999988775443
No 384
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=63.66 E-value=2.8 Score=53.14 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1167)
..+..|+|.|+||+|||+.++.+...
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999988654
No 385
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=63.58 E-value=2.9 Score=48.60 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=23.7
Q ss_pred HHHHHHhcC--ceEEEEEeCCCCCChhhHHHHHH
Q 001063 244 AIREMIRDE--VNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 244 Ay~~m~~~~--~~QsIiisGESGaGKTe~~K~il 275 (1167)
.+..|+..+ ....++|.|+||||||+.++.++
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 444555332 46789999999999999988653
No 386
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=63.54 E-value=3.1 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~y 277 (1167)
+..|+|.|++|+|||+.+|.|...
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999987654
No 387
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=63.33 E-value=3.7 Score=51.56 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEeCCCCCChhhHHHHHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1167)
+++|.|++|.|||+.++.+-+++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999988873
No 388
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=63.33 E-value=5.5 Score=45.49 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.9
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+--|.+|||||.|+
T Consensus 90 ~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 90 DGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp TTCCEEEEEEECTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCceEE
Confidence 788999999999999999986
No 389
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=63.28 E-value=8.9 Score=34.54 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=36.6
Q ss_pred CcEEEEecCCCCEEeEEEEEecC-CeeEEEcCCCcEEEEeCCCcccCCC
Q 001063 119 KLQSWFQLPNGNWELGKILSISG-TESVISLPEGKVLKVKSENLVSANP 166 (1167)
Q Consensus 119 ~~~vw~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np 166 (1167)
|+-.| .++.|-+|+|+++.+ +..+|...||.+.+|...++.|+..
T Consensus 28 VlArW---~D~~yYPAkI~sV~~~~~YtV~F~DG~~etvk~~~IKp~~~ 73 (85)
T 3qii_A 28 VLACW---SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 73 (85)
T ss_dssp EEEEC---TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred EEEEe---CCCCEeeEEEEEECCCCeEEEEEeCCCeEEecHHHcccCCh
Confidence 44458 678899999999976 5678888899999999999988654
No 390
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=63.19 E-value=3.1 Score=41.92 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=17.0
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.||+|||+..+.++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999998877664
No 391
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=63.03 E-value=2.3 Score=51.96 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.+.|.|+||||||+..+.++.++
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456889999999999999999887654
No 392
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=62.60 E-value=4 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..|+|.|++|+|||+.++.+-+.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999886654
No 393
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=62.53 E-value=5.2 Score=45.15 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=32.0
Q ss_pred HHHHHHH-HhcCceEEEEEeCCCCCChhhHHHHHHHHHHHccC
Q 001063 242 DTAIREM-IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 242 ~~Ay~~m-~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1167)
..+...+ ........|.|+|.+|||||+.+..++.++...++
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~ 85 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL 85 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 3344443 23566789999999999999999999998887554
No 394
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=62.50 E-value=4.4 Score=46.07 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=25.2
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
....++|.|++|||||+.+.+++..++..+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g 89 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG 89 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 456799999999999999999987776543
No 395
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=62.46 E-value=7.5 Score=45.53 Aligned_cols=61 Identities=21% Similarity=0.410 Sum_probs=37.6
Q ss_pred ecCCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHH
Q 001063 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI 273 (1167)
Q Consensus 209 avNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~ 273 (1167)
.+.+|..+++ ++..+..........|. .+=..|+..++.. .++.+|+.|++|||||...-+
T Consensus 90 ~~~~f~~~~l-~~~l~~~l~~~g~~~p~--~~Q~~ai~~il~~-~~~~~l~~a~TGsGKT~~~~l 150 (479)
T 3fmp_B 90 SVKSFEELRL-KPQLLQGVYAMGFNRPS--KIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVL 150 (479)
T ss_dssp CCCCSGGGTC-CHHHHHHHHHTTCCSCC--HHHHHHHHHHTSB-SCCEEEEECCSSSSHHHHHHH
T ss_pred CcCCHHHcCC-CHHHHHHHHHcCCCCCC--HHHHHHHHHHHcC-CCCcEEEEcCCCCchhHHHHH
Confidence 4555665554 44555444444433333 3335566666653 468899999999999988543
No 396
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=62.41 E-value=5.3 Score=45.38 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=19.8
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+-.|.+|||||.|+
T Consensus 92 ~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 92 EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCCeEE
Confidence 688999999999999999996
No 397
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=62.22 E-value=5.8 Score=44.75 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.9
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+--|.+|||||.|+
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEEECCCCCCCceEe
Confidence 788999999999999999986
No 398
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=62.17 E-value=3.1 Score=46.23 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=19.9
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
+.+=.|+|.|+||||||+..+.++.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhC
Confidence 4456789999999999999988754
No 399
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=62.16 E-value=21 Score=37.58 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=40.5
Q ss_pred ecCCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHH-HHHHHH
Q 001063 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLA 279 (1167)
Q Consensus 209 avNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa 279 (1167)
.+.+|..+++ ++...+.........|..+ =..|+..++.. +.+++.+++|||||.+.-+ ++.++.
T Consensus 27 ~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~--Q~~~i~~~~~g---~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 27 PVLNFYEANF-PANVMDVIARQNFTEPTAI--QAQGWPVALSG---LDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp CCSSTTTTTC-CHHHHHHHHTTTCCSCCHH--HHHHHHHHHHT---CCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ccCCHhhcCC-CHHHHHHHHHCCCCCCCHH--HHHHHHHHhCC---CCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 3455655554 5666666665554444433 34455555543 4699999999999998655 345554
No 400
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=62.15 E-value=3.7 Score=48.20 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=25.6
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
...|+|.|.+|+|||+++-.+..+++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G 127 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG 127 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999998654
No 401
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=62.11 E-value=4.1 Score=39.30 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=16.7
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|+|||+....++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38999999999998776654
No 402
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=61.99 E-value=4 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.-+|+|.|++|+|||+.++.+-+.+
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3589999999999999999887766
No 403
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=61.71 E-value=10 Score=42.98 Aligned_cols=62 Identities=26% Similarity=0.402 Sum_probs=34.4
Q ss_pred CCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHH-HHHHH
Q 001063 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYL 278 (1167)
Q Consensus 211 NP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yL 278 (1167)
++|..+++ ++...+.........|..|. ..|+..++. + +.+|+.+++|||||.+.-+ +++.+
T Consensus 40 ~~f~~~~l-~~~~~~~l~~~~~~~~~~~Q--~~~i~~~~~-~--~~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 40 DSFDDMNL-SESLLRGIYAYGFEKPSAIQ--QRAILPCIK-G--YDVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp CCGGGGCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHT-T--CCEEECCCSCSSSHHHHHHHHHHHC
T ss_pred cCHhhCCC-CHHHHHHHHHcCCCCCCHHH--HHHhHHHhC-C--CCEEEECCCCCcccHHHHHHHHHHH
Confidence 44555443 34444443333333444433 345555554 2 3499999999999988544 34443
No 404
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.67 E-value=42 Score=40.42 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccc
Q 001063 965 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV---WQKQMRSLQSSLSIAKKSLAID 1032 (1167)
Q Consensus 965 Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~---lqkq~~~Lq~~l~~lk~~Le~~ 1032 (1167)
+++...+.+.+...++.++...+++.+...+.....+.+...++.. .+++..+++++++.+++++..+
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555544444444444444444433 2334445555555555544443
No 405
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=61.53 E-value=54 Score=29.12 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 965 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKS 1006 (1167)
Q Consensus 965 Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~ 1006 (1167)
||..+....+..+...+++...+..+..++.++.+++.+-.+
T Consensus 15 LQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~e 56 (81)
T 1wt6_A 15 LQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRD 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444444333
No 406
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=61.49 E-value=5.4 Score=49.63 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=40.2
Q ss_pred CCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHH-HHHHHHH
Q 001063 213 FKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLAA 280 (1167)
Q Consensus 213 ~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa~ 280 (1167)
|..+|+ .+...+.++.... .++|.+=..|+..++.+ ++.+||+|++|||||..+-+ +++.+..
T Consensus 3 f~~l~l-~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~~ 66 (720)
T 2zj8_A 3 VDELRV-DERIKSTLKERGI--ESFYPPQAEALKSGILE--GKNALISIPTASGKTLIAEIAMVHRILT 66 (720)
T ss_dssp GGGCCS-CHHHHHHHHHTTC--CBCCHHHHHHHTTTGGG--TCEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred HhhcCC-CHHHHHHHHHCCC--CCCCHHHHHHHHHHhcC--CCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 445553 4566666665433 34444555666653333 57899999999999998844 4566653
No 407
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.48 E-value=56 Score=33.78 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 965 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAK 1026 (1167)
Q Consensus 965 Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~lqkq~~~Lq~~l~~lk 1026 (1167)
|+..+..++++...+...+..|..++..+..+..............+++++..|+.....++
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444333333322222333333334433333333
No 408
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=61.34 E-value=4.1 Score=40.15 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=17.4
Q ss_pred EEEEEeCCCCCChhhHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1167)
--|+|.|.+|+|||+..+.++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999998877664
No 409
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=61.31 E-value=6.1 Score=44.90 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=25.2
Q ss_pred chhHH-HHHHHHHHHhcCceEEEEEeCCCCCChhhHH
Q 001063 236 HVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 236 Hiyav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 271 (1167)
.||.- +......++ ++.|-||+-.|.+|||||.|+
T Consensus 66 ~vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 66 AVYQACVQPLLEAFF-EGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTHHHHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHH-hhcCeeEEEecccCCCceEee
Confidence 34443 333333333 688999999999999999986
No 410
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=61.26 E-value=3.9 Score=39.36 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=16.7
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|++.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998866554
No 411
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.21 E-value=49 Score=31.93 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 991 QQYESRWSEYEQKMKSMEEVWQKQMRSLQ 1019 (1167)
Q Consensus 991 ~~le~r~~e~E~k~~~~ee~lqkq~~~Lq 1019 (1167)
..++..+..+|..+..+...+..++.+.|
T Consensus 78 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 78 KDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444445555444444444444443
No 412
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=61.18 E-value=4.1 Score=48.88 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHHhc--CceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 246 REMIRD--EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 246 ~~m~~~--~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
..++.. .....++|.|++|||||+.++.++-.++.
T Consensus 271 d~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 271 DEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 345433 35678999999999999999998766543
No 413
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=61.08 E-value=56 Score=33.08 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 966 QRRVLKAEAALREKEEENDILHQRL 990 (1167)
Q Consensus 966 q~rv~kae~~l~eleeEn~~L~~el 990 (1167)
+.++..++.....+++++..|+.++
T Consensus 54 q~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 54 QERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 414
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=60.97 E-value=8.8 Score=45.86 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
....|+|.|..|+|||+++-.+..+|+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G 129 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG 129 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 356899999999999999999999998753
No 415
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=60.70 E-value=4.6 Score=39.06 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.7
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|+|||+....++
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998766554
No 416
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=60.53 E-value=5.2 Score=51.44 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=24.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHH--HHHHHHcc
Q 001063 253 VNQSIIISGESGAGKTETAKIA--MQYLAALG 282 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~i--l~yLa~~~ 282 (1167)
..+.++|+|++|||||+..|.+ +.+++..|
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G 692 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG 692 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999988 55666554
No 417
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=60.50 E-value=5.7 Score=45.39 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=22.1
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHH
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~ 271 (1167)
.....+ ++.|-||+.-|.+|||||.|+
T Consensus 96 lv~~~l-~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQAL-DGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHh-CCCCEEEEEeCCCCCCccEEe
Confidence 334433 788999999999999999886
No 418
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=60.26 E-value=6.4 Score=45.08 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.8
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+--|.+|||||.|+
T Consensus 82 ~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 82 AGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceEEEeecCCCCCCceEE
Confidence 788999999999999999986
No 419
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=60.23 E-value=5.2 Score=44.64 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...+.|+|.|.+|+|||+.+..+....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 457899999999999999887776544
No 420
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=60.21 E-value=4.4 Score=40.50 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=17.8
Q ss_pred EEEEEeCCCCCChhhHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1167)
=-|+|.|.+|+|||+..+.++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999877764
No 421
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=60.03 E-value=12 Score=42.21 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=36.7
Q ss_pred cCCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHH
Q 001063 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 210 vNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il 275 (1167)
.++|..+++ +++..+.........|..|. ..|+..++.. +.+++.++.|+|||.+.-+.+
T Consensus 20 ~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~i~~~---~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYL-KRELLMGIFEAGFEKPSPIQ--EEAIPVAITG---RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHHT---CCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhcC---CCEEEECCCCcHHHHHHHHHH
Confidence 345777775 45555555544444444443 3455555543 349999999999998765543
No 422
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=59.95 E-value=7.1 Score=44.87 Aligned_cols=35 Identities=31% Similarity=0.607 Sum_probs=25.1
Q ss_pred chhHH-HHHHHHHHHhcCceEEEEEeCCCCCChhhHH
Q 001063 236 HVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 236 Hiyav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 271 (1167)
.||.- +......++ ++.|-||+--|.+|||||.|+
T Consensus 83 ~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 83 DVYSVVVSPLIEEVL-NGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHHHHHHHH-HTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCceEEEEeecCCCCCcceec
Confidence 45543 333333333 688999999999999999885
No 423
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=59.88 E-value=4.4 Score=42.35 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.2
Q ss_pred EEEEeCCCCCChhhHHHH
Q 001063 256 SIIISGESGAGKTETAKI 273 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~ 273 (1167)
-++|+|..|||||..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 468999999999998644
No 424
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=59.72 E-value=4.7 Score=40.52 Aligned_cols=20 Identities=40% Similarity=0.571 Sum_probs=17.0
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
.|+|.|.+|+|||+....++
T Consensus 50 ~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 69999999999998876654
No 425
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=59.71 E-value=3.9 Score=50.14 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+.+.|.|+||||||+..|+|.-.+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 46789999999999999999886544
No 426
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=59.70 E-value=12 Score=32.24 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=36.2
Q ss_pred CcEEEEecCCCCEEeEEEEEecC-CeeEEEcCCCcEEEEeCCCcccCCC
Q 001063 119 KLQSWFQLPNGNWELGKILSISG-TESVISLPEGKVLKVKSENLVSANP 166 (1167)
Q Consensus 119 ~~~vw~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np 166 (1167)
|+-.| .++.|-+|+|+++.+ +..+|...||.+.+|...++.|...
T Consensus 13 vmArW---~D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 13 VLACW---SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 58 (67)
T ss_dssp EEEEC---TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred EEEEc---CCCCEeeEEEEEECCCCeEEEEEeCCceEEEeHHHcccCCc
Confidence 44457 778899999999977 4678888889999999999987654
No 427
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=59.68 E-value=5.1 Score=42.71 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=24.2
Q ss_pred HHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.|+..++..+ .+||.|+.|+|||..+-.++..+
T Consensus 100 ~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 100 KALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3555555432 38999999999999988776654
No 428
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=59.56 E-value=8.4 Score=44.59 Aligned_cols=59 Identities=20% Similarity=0.075 Sum_probs=47.1
Q ss_pred eEecCCCCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 207 LVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 207 LiavNP~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
|-.+||...+++- .-...+.-+|...|.--++-|-+.|-|.+|+|||+.+..|.+..+.
T Consensus 143 l~Pi~P~~R~~le---------------~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 143 LTPDYPRERFILE---------------TDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp SCEECCCSBCCCC---------------CSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCchhhcccc---------------ccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 4467888777541 1234667789989988899999999999999999999988888765
No 429
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=59.52 E-value=6.5 Score=44.89 Aligned_cols=36 Identities=19% Similarity=0.496 Sum_probs=25.9
Q ss_pred CchhH-HHHHHHHHHHhcCceEEEEEeCCCCCChhhHH
Q 001063 235 PHVYA-ITDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 235 PHiya-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 271 (1167)
-.||. ++.......+ ++.|-||+--|.+|||||.|+
T Consensus 62 ~~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 62 SDIFDFSIKPTVDDIL-NGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHHHTHHHHHHHT-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCCcceEEEECCCCCCcceEe
Confidence 34555 3333333333 688999999999999999886
No 430
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=59.51 E-value=8.9 Score=43.46 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHh-cCceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 239 AITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 239 avA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
..+......+.. .+..-.|+|+|..|+|||+.+..+..+|+..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g 107 (355)
T 3p32_A 63 EQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERG 107 (355)
T ss_dssp HHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 445555555542 45567899999999999999999988887543
No 431
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=59.48 E-value=7.6 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.9
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+-.|.+|||||.|+
T Consensus 134 ~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 134 EGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred cCCceEEEEeCCCCCCCCEEe
Confidence 789999999999999999986
No 432
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=59.26 E-value=6 Score=45.18 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.8
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+-.|.+|||||.|+
T Consensus 103 ~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 103 NGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCEEEEEECCTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCceeee
Confidence 788999999999999999986
No 433
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=59.24 E-value=5 Score=38.94 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.6
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998766553
No 434
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=59.19 E-value=7.3 Score=44.51 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.6
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+--|.+|||||.|+
T Consensus 86 ~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 86 MGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCCceEE
Confidence 688999999999999999886
No 435
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=59.04 E-value=3.4 Score=49.93 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1167)
..+.+.|.|+||||||+..|.|.-.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457788999999999999998865443
No 436
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=59.01 E-value=5 Score=39.53 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=18.0
Q ss_pred eEEEEEeCCCCCChhhHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il 275 (1167)
.=.|+|.|.+|+|||+....++
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 4468999999999998876554
No 437
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=58.78 E-value=10 Score=40.76 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCceEEEEEeCCCCCChhhHHHHH-HHHHHH
Q 001063 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIA-MQYLAA 280 (1167)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i-l~yLa~ 280 (1167)
..|+..++.. +.+|+.+.+|||||.+.-+. ++.+..
T Consensus 82 ~~~i~~~~~~---~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 82 HKSIRPLLEG---RDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp HHHHHHHHHT---CCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 4455555543 34999999999999986664 455544
No 438
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=58.77 E-value=6.7 Score=44.66 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=20.1
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+-.|.+|||||.|+
T Consensus 83 ~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 83 DGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp TTCEEEEEEECSTTSSHHHHH
T ss_pred CCcceeEEEeCCCCCCCceEe
Confidence 789999999999999999997
No 439
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=58.74 E-value=5.3 Score=45.14 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=23.8
Q ss_pred HHHHHHhc--CceEEEEEeCCCCCChhhHHHHHHH
Q 001063 244 AIREMIRD--EVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 244 Ay~~m~~~--~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
....++.. .....++|.|++|+|||+.+.++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444432 3567899999999999998877643
No 440
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=58.67 E-value=6.4 Score=44.96 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=22.1
Q ss_pred HHHHHHhcCceEEEEEeCCCCCChhhHH
Q 001063 244 AIREMIRDEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~ 271 (1167)
.....+ ++.|-||+-.|.+|||||.|+
T Consensus 95 lv~~~l-~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQAL-DGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHh-CCCceEEEEECCCCCCCceEe
Confidence 333333 788999999999999999886
No 441
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=58.45 E-value=5.2 Score=38.58 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=16.9
Q ss_pred EEEEEeCCCCCChhhHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1167)
=-|+|.|.+|+|||+....++
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998765543
No 442
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=58.36 E-value=6.2 Score=40.42 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCChhhHHHHH-HHHH
Q 001063 254 NQSIIISGESGAGKTETAKIA-MQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~i-l~yL 278 (1167)
.+-++|+|..|||||+.+..+ .+|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999998544 4443
No 443
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=58.35 E-value=7.2 Score=44.67 Aligned_cols=21 Identities=38% Similarity=0.552 Sum_probs=19.7
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+-.|.+|||||.|+
T Consensus 87 ~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 87 EGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred cCCeeEEEEeCCCCCCCceEe
Confidence 788999999999999999886
No 444
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=58.17 E-value=7.4 Score=41.06 Aligned_cols=28 Identities=39% Similarity=0.503 Sum_probs=19.8
Q ss_pred HHHHHHHhcCceEEEEEeCCCCCChhhHHHH
Q 001063 243 TAIREMIRDEVNQSIIISGESGAGKTETAKI 273 (1167)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~ 273 (1167)
.|+..++.. ..+|+.+++|||||.+.-+
T Consensus 59 ~ai~~i~~~---~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 59 RAIIPCIKG---YDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp HHHHHHHTT---CCEEECCCSSHHHHHHHHH
T ss_pred HHHHHHhCC---CCEEEECCCCCcHHHHHHH
Confidence 455555543 3499999999999987433
No 445
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.17 E-value=25 Score=30.87 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=39.1
Q ss_pred ccCcEEEEecCCCCEEeEEEEEecC-CeeEEEcCCCcEEEEeCCCcccCCCC
Q 001063 117 KKKLQSWFQLPNGNWELGKILSISG-TESVISLPEGKVLKVKSENLVSANPD 167 (1167)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np~ 167 (1167)
+.|..|-..-.++.|-.|+|.++.+ +.++|...|+...+|+..+|.|..+.
T Consensus 11 kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~Dyn~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 11 KAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPED 62 (74)
T ss_dssp CTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETTSCEEEECGGGEECCCGG
T ss_pred CCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEecCCeEEecHHHCeeCChh
Confidence 3344544444488899999999976 67888888888888998888887654
No 446
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=57.95 E-value=3.2 Score=42.52 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=19.8
Q ss_pred cCceEEEEEeCCCCCChhhHHHHHH
Q 001063 251 DEVNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il 275 (1167)
-.....|+|.|.+|||||+..+.++
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3445679999999999998876653
No 447
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=57.87 E-value=9.5 Score=43.22 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
.-.|.|.|.+|||||+....++.++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~ 102 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERG 102 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcC
Confidence 56899999999999999999999886644
No 448
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=57.84 E-value=5.5 Score=38.60 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.8
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|+|||+....++
T Consensus 5 ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999998766654
No 449
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=57.82 E-value=38 Score=32.85 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 990 LQQYESRWSEYEQKMKSMEEVWQKQMRSLQ 1019 (1167)
Q Consensus 990 l~~le~r~~e~E~k~~~~ee~lqkq~~~Lq 1019 (1167)
+..++..+..+|..+..+...+..++.+.|
T Consensus 79 l~~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 79 LAQIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544444
No 450
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=57.82 E-value=33 Score=28.54 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=41.3
Q ss_pred ccCcEEEEecCCCCEEeEEEEEecC--CeeEEEcCCCcEEEEeCCCcccCC
Q 001063 117 KKKLQSWFQLPNGNWELGKILSISG--TESVISLPEGKVLKVKSENLVSAN 165 (1167)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~~~--~~~~v~~~~g~~~~v~~~~~~~~n 165 (1167)
.+|..|.+...+|.|-+|+|+++.. +...|...|+....+...++.+..
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAA 55 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEEECS
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHccccc
Confidence 4567899999999999999999754 478899999999999888887654
No 451
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=57.70 E-value=5.4 Score=38.84 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.0
Q ss_pred EEEEEeCCCCCChhhHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1167)
=-|+|.|.+|+|||+....++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 358999999999998765543
No 452
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=57.65 E-value=5.5 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=16.4
Q ss_pred EEEEeCCCCCChhhHHHHH
Q 001063 256 SIIISGESGAGKTETAKIA 274 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~i 274 (1167)
-|+|.|.+|+|||+....+
T Consensus 8 ~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999877665
No 453
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=57.55 E-value=4 Score=50.02 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.7
Q ss_pred EEEeCCCCCChhhHHHHHHHH
Q 001063 257 IIISGESGAGKTETAKIAMQY 277 (1167)
Q Consensus 257 IiisGESGaGKTe~~K~il~y 277 (1167)
|.|.|+||||||+..+.|+-.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 899999999999998888654
No 454
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=57.53 E-value=6.7 Score=44.72 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHHcc
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1167)
....|+|.|++|+|||+.+.+++..++..+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g 91 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG 91 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 456899999999999999999888777543
No 455
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=57.48 E-value=6.7 Score=48.71 Aligned_cols=63 Identities=19% Similarity=0.393 Sum_probs=40.2
Q ss_pred CCCCCCCcHHHHHHhhcCCCCCCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChhhHHHHH-HHHHHH
Q 001063 213 FKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIA-MQYLAA 280 (1167)
Q Consensus 213 ~k~l~iY~~~~~~~Y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i-l~yLa~ 280 (1167)
|..+++ .+...+.++..+. .+++.+=..|+..++.+ ++.+||+|++|||||..+-+. ++.+..
T Consensus 10 ~~~l~l-~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~~ 73 (715)
T 2va8_A 10 IEDLKL-PSNVIEIIKKRGI--KKLNPPQTEAVKKGLLE--GNRLLLTSPTGSGKTLIAEMGIISFLLK 73 (715)
T ss_dssp GGGSSS-CHHHHHHHHTTSC--CBCCHHHHHHHHTTTTT--TCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHcCC-CHHHHHHHHhCCC--CCCCHHHHHHHHHHhcC--CCcEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 445553 4566666655332 34455556666653333 678999999999999998554 456553
No 456
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=57.45 E-value=5.5 Score=39.16 Aligned_cols=20 Identities=25% Similarity=0.528 Sum_probs=16.7
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|+|||+....++
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998766553
No 457
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=57.29 E-value=7.4 Score=41.37 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=26.3
Q ss_pred eEEEEEeCC-CCCChhhHHHHHHHHHHHccC
Q 001063 254 NQSIIISGE-SGAGKTETAKIAMQYLAALGG 283 (1167)
Q Consensus 254 ~QsIiisGE-SGaGKTe~~K~il~yLa~~~~ 283 (1167)
-++|+|+|- ||+|||..+-.+++.|...|-
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 368999987 899999999999999998653
No 458
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=57.25 E-value=6.1 Score=44.99 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.8
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+--|.+|||||.|+
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred cCCccceeeecCCCCCCCeEE
Confidence 788999999999999999886
No 459
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=57.11 E-value=5.4 Score=38.80 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.1
Q ss_pred EEEEEeCCCCCChhhHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1167)
=-|+|.|.+|+|||+....++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998766554
No 460
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=56.93 E-value=5 Score=39.44 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=17.4
Q ss_pred EEEEEeCCCCCChhhHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1167)
=-|+|.|.+|+|||+....++
T Consensus 10 ~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999998766654
No 461
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=56.67 E-value=6.1 Score=46.40 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.2
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
....|+|.|.+|+|||+.+..+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999888877664
No 462
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=56.60 E-value=4.9 Score=41.45 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.6
Q ss_pred EEEeCCCCCChhhHHHHHH
Q 001063 257 IIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 257 IiisGESGaGKTe~~K~il 275 (1167)
|+|+|-+|||||+-+..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7999999999999887653
No 463
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=56.49 E-value=3.2 Score=51.43 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCCChhhHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1167)
..+.+.|.|+||||||+..+.++
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 45788999999999999998765
No 464
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=56.47 E-value=6.7 Score=44.29 Aligned_cols=21 Identities=48% Similarity=0.618 Sum_probs=19.9
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+--|.+|||||.|+
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCEEEEEeECCCCCCCcEEE
Confidence 789999999999999999886
No 465
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=56.44 E-value=1.1e+02 Score=31.67 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 982 ENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAK 1026 (1167)
Q Consensus 982 En~~L~~el~~le~r~~e~E~k~~~~ee~lqkq~~~Lq~~l~~lk 1026 (1167)
.+..|..++..+......+..+.......+.+++..||.++..++
T Consensus 57 ~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333444444444443
No 466
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=56.21 E-value=7.5 Score=44.65 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=25.1
Q ss_pred chhHH-HHHHHHHHHhcCceEEEEEeCCCCCChhhHH
Q 001063 236 HVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 236 Hiyav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 271 (1167)
.||.- +......++ ++.|-||+--|.+|||||.|+
T Consensus 84 ~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 84 ELYDETFRPLVDSVL-QGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTHHHHHHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCeeeEEeecCCCCCCCEeE
Confidence 34443 333333333 688999999999999999886
No 467
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=56.09 E-value=5.8 Score=40.82 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=18.1
Q ss_pred eEEEEEeCCCCCChhhHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il 275 (1167)
.=.|+|.|.+|+|||+....++
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4469999999999998876654
No 468
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=55.99 E-value=7.3 Score=44.36 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.7
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+--|.+|||||.|+
T Consensus 87 ~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 87 EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceeEEeecCCCCCCCEEe
Confidence 688999999999999999886
No 469
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.92 E-value=1.3e+02 Score=27.83 Aligned_cols=46 Identities=24% Similarity=0.215 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 965 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 1010 (1167)
Q Consensus 965 Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~ 1010 (1167)
...+...++..+...+..+..+..++..+..++...+..+...++.
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443333
No 470
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=55.86 E-value=6.7 Score=45.58 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.7
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+-.|.+|||||.|+
T Consensus 152 ~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 152 EGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp TTCEEEEEEEESTTSSHHHHH
T ss_pred cCCceeEEeecCCCCCCCeEe
Confidence 688999999999999999886
No 471
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=55.85 E-value=2.8 Score=44.81 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=20.2
Q ss_pred EEEeCCCCCChhhHHHHHHHHHHHc
Q 001063 257 IIISGESGAGKTETAKIAMQYLAAL 281 (1167)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~ 281 (1167)
+.|.|+||||||+..+.|.-.+..-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcccccC
Confidence 4588999999999999887666443
No 472
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=55.80 E-value=5 Score=41.06 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=25.8
Q ss_pred HHHHHHHhcCceEEEEEeCCCCCChhhHHHHHHHHHHH
Q 001063 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1167)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1167)
.|+..++. ++.+||.+++|+|||..+-.++..+..
T Consensus 40 ~~i~~~~~---~~~~li~~~tGsGKT~~~~~~~~~~~~ 74 (216)
T 3b6e_A 40 EVAQPALE---GKNIIICLPTGSGKTRVAVYIAKDHLD 74 (216)
T ss_dssp HHHHHHHT---TCCEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---CCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45555553 356999999999999998887765543
No 473
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=55.73 E-value=5.8 Score=39.00 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=18.1
Q ss_pred ceEEEEEeCCCCCChhhHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1167)
+.--|+|.|.+|+|||+....++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34468999999999998776553
No 474
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=55.67 E-value=5.5 Score=42.05 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=18.4
Q ss_pred eEEEEEeCCCCCChhhHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il 275 (1167)
.=-|+|.|.+|+|||+....++
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHc
Confidence 3468999999999999877765
No 475
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=55.50 E-value=6.1 Score=45.34 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.8
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+-.|.+|||||.|+
T Consensus 77 ~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 77 DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred cCCceEEEEECCCCCCCeEee
Confidence 789999999999999999886
No 476
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=55.32 E-value=6.3 Score=38.97 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.2
Q ss_pred EEEEEeCCCCCChhhHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1167)
=-|+|.|.+|+|||+....++
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 359999999999998766554
No 477
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=55.21 E-value=6.3 Score=38.62 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.3
Q ss_pred EEEEEeCCCCCChhhHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1167)
=-|+|.|.+|+|||+....++
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999766654
No 478
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=55.20 E-value=5.7 Score=38.59 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.6
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 48999999999998766554
No 479
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=55.13 E-value=5.2 Score=39.98 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.4
Q ss_pred EEEEeCCCCCChhhHHHHH
Q 001063 256 SIIISGESGAGKTETAKIA 274 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~i 274 (1167)
-|+|.|.+|+|||+....+
T Consensus 25 ~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999887665
No 480
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=55.06 E-value=6 Score=38.69 Aligned_cols=20 Identities=30% Similarity=0.611 Sum_probs=16.6
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|+|||+....++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 58999999999998766543
No 481
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=54.99 E-value=6.5 Score=38.31 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=16.8
Q ss_pred EEEEEeCCCCCChhhHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIA 274 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~i 274 (1167)
=-|+|.|.+|+|||+....+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRL 27 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45999999999999876655
No 482
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.99 E-value=50 Score=32.43 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001063 959 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQ 1002 (1167)
Q Consensus 959 ~~~l~~Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~ 1002 (1167)
..++..|+.++..+.-++.+.++++..+++++..++.+..++|.
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444443
No 483
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=54.94 E-value=6.3 Score=39.08 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=16.8
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|+|||+....++
T Consensus 6 ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998766654
No 484
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=54.92 E-value=13 Score=40.79 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=26.7
Q ss_pred HHHHHHHhcC--ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 243 TAIREMIRDE--VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 243 ~Ay~~m~~~~--~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
.+....+... +.-+|+|.|+.|+|||..++.|++++
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3444555433 24589999999999999999888764
No 485
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=54.76 E-value=6.4 Score=39.37 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.6
Q ss_pred EEEEEeCCCCCChhhHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1167)
=-|+|.|.+|+|||+....++
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 468999999999998876654
No 486
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=54.75 E-value=6.6 Score=38.05 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=16.6
Q ss_pred EEEEeCCCCCChhhHHHHHH
Q 001063 256 SIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1167)
-|+|.|.+|+|||+....++
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998766553
No 487
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=54.73 E-value=68 Score=28.16 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=39.9
Q ss_pred cCcEEEEecCCCCEEeEEEEEec--CCeeEEEcCCCcEEEEeCCCcccC
Q 001063 118 KKLQSWFQLPNGNWELGKILSIS--GTESVISLPEGKVLKVKSENLVSA 164 (1167)
Q Consensus 118 ~~~~vw~~~~~~~~~~~~v~~~~--~~~~~v~~~~g~~~~v~~~~~~~~ 164 (1167)
++..|.+...+|.|-+|+|++++ .+...|...|+....+.-.++.++
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi~~~ 77 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPA 77 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTBCCC
T ss_pred cCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeeccccc
Confidence 44589999999999999999875 567889999999999988888764
No 488
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=54.72 E-value=6.6 Score=38.02 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=16.5
Q ss_pred EEEeCCCCCChhhHHHHHH
Q 001063 257 IIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 257 IiisGESGaGKTe~~K~il 275 (1167)
|+|.|.+|+|||.....++
T Consensus 3 i~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999877664
No 489
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=54.45 E-value=6.6 Score=39.04 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=16.9
Q ss_pred EEEEEeCCCCCChhhHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1167)
=-|+|.|.+|+|||+....++
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 368999999999998765543
No 490
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=54.30 E-value=3.2 Score=55.58 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=22.8
Q ss_pred ceEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..|.|-|.|+||||||+..+.+++++
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 45889999999999999999988764
No 491
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=54.26 E-value=6.6 Score=39.11 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.2
Q ss_pred eEEEEEeCCCCCChhhHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il 275 (1167)
..-|+|.|.+|+|||+..+.++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999998776654
No 492
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=54.26 E-value=7.6 Score=44.15 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=20.0
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+--|.+|||||.|+
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 82 DGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GTCCEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEEECCCCCCCcEec
Confidence 788999999999999999997
No 493
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=54.20 E-value=5.8 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.8
Q ss_pred CceEEEEEeCCCCCChhhHHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
...+.++|+|++|||||+..|.+.-
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 3567899999999999999999864
No 494
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=54.13 E-value=6.7 Score=38.89 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=17.2
Q ss_pred EEEEEeCCCCCChhhHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1167)
=-|+|.|.+|+|||+....++
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998766654
No 495
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=54.13 E-value=8.8 Score=45.11 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCChhhHHHHHHHHH
Q 001063 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1167)
...|++.|.+|+|||+.++.+-+.|
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999988775543
No 496
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=54.01 E-value=1.3e+02 Score=27.56 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcc
Q 001063 954 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQ---KQMRSLQSSLSIAKKSLA 1030 (1167)
Q Consensus 954 el~~~~~~l~~Lq~rv~kae~~l~eleeEn~~L~~el~~le~r~~e~E~k~~~~ee~lq---kq~~~Lq~~l~~lk~~Le 1030 (1167)
+..........++..+..++....++++++..|..+++.++..+..++..+......+. +.....+..++++...+.
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccc
Q 001063 1031 IDDSE 1035 (1167)
Q Consensus 1031 ~~e~~ 1035 (1167)
-++.+
T Consensus 97 llEEe 101 (101)
T 3u59_A 97 LVEEE 101 (101)
T ss_dssp HHTTC
T ss_pred HHccC
No 497
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=53.95 E-value=8.4 Score=44.44 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.7
Q ss_pred cCceEEEEEeCCCCCChhhHH
Q 001063 251 DEVNQSIIISGESGAGKTETA 271 (1167)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1167)
++.|-||+--|.+|||||.|+
T Consensus 132 ~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 132 EGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp TTCEEEEEEESCTTSSHHHHH
T ss_pred cCCceEEEEecCCCCCCCeEe
Confidence 688999999999999999986
No 498
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=53.95 E-value=6.6 Score=39.55 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=18.7
Q ss_pred CceEEEEEeCCCCCChhhHHHHHH
Q 001063 252 EVNQSIIISGESGAGKTETAKIAM 275 (1167)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il 275 (1167)
...=-|+|.|.+|+|||+....++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHh
Confidence 345579999999999998765543
No 499
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=53.90 E-value=5.8 Score=48.59 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCChhhHHHHHHHHH
Q 001063 255 QSIIISGESGAGKTETAKIAMQYL 278 (1167)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1167)
..+.|.|+|||||||..|.|.-.+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 557899999999999998886544
No 500
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=53.81 E-value=6.9 Score=40.11 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHhcCceEEEEEeCCCCCChhhHHHHHHH
Q 001063 248 MIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (1167)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~ 276 (1167)
|.+..+.=-|+|.|.+|+|||.....++.
T Consensus 1 m~~~~~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 1 MARKSSQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -------CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhC
Done!