Query 001064
Match_columns 1167
No_of_seqs 892 out of 4236
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 14:50:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1258 mRNA processing protei 100.0 2.5E-53 5.4E-58 480.7 50.8 539 83-636 31-572 (577)
2 KOG0116 RasGAP SH3 binding pro 100.0 3E-53 6.5E-58 476.3 33.8 389 714-1145 9-401 (419)
3 KOG1914 mRNA cleavage and poly 100.0 1.1E-50 2.4E-55 446.8 50.6 480 87-643 10-531 (656)
4 KOG1915 Cell cycle control pro 100.0 2.3E-48 5.1E-53 420.7 44.1 516 51-611 7-628 (677)
5 KOG1915 Cell cycle control pro 100.0 9E-36 1.9E-40 323.2 41.0 427 117-612 57-540 (677)
6 COG5107 RNA14 Pre-mRNA 3'-end 100.0 2.9E-33 6.2E-38 302.0 41.8 460 77-612 22-535 (660)
7 KOG0495 HAT repeat protein [RN 100.0 1.1E-30 2.5E-35 293.1 43.4 511 23-612 237-786 (913)
8 KOG2047 mRNA splicing factor [ 100.0 1.7E-29 3.6E-34 283.8 47.5 487 86-611 16-618 (835)
9 KOG4626 O-linked N-acetylgluco 100.0 2.4E-30 5.3E-35 288.4 36.7 441 41-543 60-500 (966)
10 KOG0495 HAT repeat protein [RN 100.0 1.7E-28 3.8E-33 275.7 47.1 479 54-612 340-884 (913)
11 TIGR02917 PEP_TPR_lipo putativ 100.0 9.5E-27 2.1E-31 304.8 52.4 514 34-606 368-898 (899)
12 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-26 2.6E-31 303.9 52.4 520 33-611 333-869 (899)
13 KOG2047 mRNA splicing factor [ 100.0 1.8E-26 4E-31 259.5 44.7 501 81-608 44-723 (835)
14 KOG4626 O-linked N-acetylgluco 100.0 4.8E-28 1E-32 270.2 30.9 432 71-611 57-488 (966)
15 KOG2104 Nuclear transport fact 100.0 4.2E-29 9E-34 220.7 10.7 116 717-837 5-123 (126)
16 PRK11447 cellulose synthase su 100.0 6.4E-25 1.4E-29 291.3 49.2 514 35-606 118-738 (1157)
17 PRK11447 cellulose synthase su 100.0 1.4E-24 3.1E-29 288.1 51.4 517 35-610 34-702 (1157)
18 TIGR00990 3a0801s09 mitochondr 99.9 7.9E-24 1.7E-28 264.3 49.5 413 97-566 127-572 (615)
19 TIGR00990 3a0801s09 mitochondr 99.9 2.1E-22 4.6E-27 251.4 54.1 427 134-611 128-574 (615)
20 cd00780 NTF2 Nuclear transport 99.9 2.8E-25 6.1E-30 214.7 13.4 115 718-837 2-119 (119)
21 PRK15174 Vi polysaccharide exp 99.9 1.2E-21 2.5E-26 244.1 47.3 355 69-532 49-407 (656)
22 PRK10049 pgaA outer membrane p 99.9 6.8E-23 1.5E-27 260.5 34.5 410 77-536 29-464 (765)
23 PRK10049 pgaA outer membrane p 99.9 2.9E-21 6.2E-26 245.7 46.6 420 92-570 13-461 (765)
24 PRK15174 Vi polysaccharide exp 99.9 9.5E-21 2.1E-25 236.0 42.9 371 66-533 9-386 (656)
25 PRK09782 bacteriophage N4 rece 99.9 1.5E-20 3.3E-25 238.7 43.6 537 36-612 51-710 (987)
26 KOG0128 RNA-binding protein SA 99.9 9E-20 2E-24 212.6 42.3 444 77-605 93-560 (881)
27 KOG0547 Translocase of outer m 99.9 1.2E-19 2.6E-24 199.7 40.0 502 50-595 81-587 (606)
28 KOG1914 mRNA cleavage and poly 99.9 1.3E-19 2.7E-24 201.9 39.2 392 123-608 10-464 (656)
29 KOG1070 rRNA processing protei 99.9 9.9E-21 2.1E-25 228.8 28.1 255 333-612 1445-1704(1710)
30 KOG2396 HAT (Half-A-TPR) repea 99.9 2.8E-19 6.1E-24 198.2 36.5 442 116-612 88-563 (568)
31 PRK09782 bacteriophage N4 rece 99.9 8.7E-19 1.9E-23 222.8 45.4 524 33-612 82-744 (987)
32 PF02136 NTF2: Nuclear transpo 99.9 1.1E-21 2.4E-26 190.0 11.6 113 721-835 1-118 (118)
33 PRK14574 hmsH outer membrane p 99.8 7.1E-17 1.5E-21 201.5 43.5 170 73-251 44-215 (822)
34 KOG2002 TPR-containing nuclear 99.8 1.4E-17 2.9E-22 197.6 34.1 419 33-541 311-758 (1018)
35 KOG4353 RNA export factor NXT1 99.8 8.8E-20 1.9E-24 164.2 6.8 113 721-838 15-137 (139)
36 KOG2002 TPR-containing nuclear 99.8 1.5E-16 3.2E-21 188.9 34.6 538 41-612 176-749 (1018)
37 PRK11788 tetratricopeptide rep 99.8 8.6E-16 1.9E-20 181.7 38.1 131 357-489 183-313 (389)
38 KOG2076 RNA polymerase III tra 99.8 1E-14 2.2E-19 172.7 43.6 361 77-517 153-544 (895)
39 PRK11788 tetratricopeptide rep 99.7 3.7E-15 7.9E-20 176.4 38.2 309 136-570 38-356 (389)
40 KOG1155 Anaphase-promoting com 99.7 5.7E-15 1.2E-19 162.5 35.4 365 99-528 166-536 (559)
41 PLN03218 maturation of RBCL 1; 99.7 2.4E-13 5.1E-18 174.7 53.0 419 82-608 356-783 (1060)
42 PRK14574 hmsH outer membrane p 99.7 2.3E-13 4.9E-18 170.4 49.5 457 91-614 28-519 (822)
43 PF13429 TPR_15: Tetratricopep 99.7 2.9E-17 6.2E-22 184.9 13.2 268 134-488 9-278 (280)
44 KOG1126 DNA-binding cell divis 99.7 2.7E-15 5.8E-20 173.0 29.2 302 102-490 322-623 (638)
45 KOG2076 RNA polymerase III tra 99.7 4.2E-14 9.1E-19 167.5 38.6 384 33-441 141-544 (895)
46 PLN03134 glycine-rich RNA-bind 99.7 2.4E-16 5.2E-21 156.1 16.2 83 1030-1113 33-116 (144)
47 PLN03218 maturation of RBCL 1; 99.7 7E-13 1.5E-17 170.4 51.6 412 72-542 379-798 (1060)
48 PLN03077 Protein ECB2; Provisi 99.7 4.7E-14 1E-18 183.5 40.9 452 71-612 230-690 (857)
49 KOG0547 Translocase of outer m 99.7 2E-13 4.3E-18 151.3 38.9 430 135-611 117-569 (606)
50 PLN03081 pentatricopeptide (PP 99.7 1.1E-13 2.3E-18 176.0 42.7 433 97-611 87-526 (697)
51 KOG1070 rRNA processing protei 99.7 7E-15 1.5E-19 178.9 26.3 253 152-488 1443-1701(1710)
52 PF13429 TPR_15: Tetratricopep 99.7 1.9E-16 4.1E-21 178.2 11.4 264 99-450 10-275 (280)
53 KOG0105 Alternative splicing f 99.7 1.1E-16 2.4E-21 153.9 6.8 130 1031-1164 6-146 (241)
54 TIGR00540 hemY_coli hemY prote 99.7 3.5E-13 7.5E-18 159.8 38.3 293 111-528 96-399 (409)
55 KOG1174 Anaphase-promoting com 99.6 1.7E-13 3.6E-18 148.7 30.5 379 70-548 137-520 (564)
56 PF05843 Suf: Suppressor of fo 99.6 8.7E-16 1.9E-20 171.3 13.6 159 459-643 2-161 (280)
57 PLN03081 pentatricopeptide (PP 99.6 9.5E-13 2.1E-17 167.3 42.5 450 73-607 97-556 (697)
58 PLN03077 Protein ECB2; Provisi 99.6 7.4E-13 1.6E-17 172.4 39.5 450 35-559 228-717 (857)
59 KOG1155 Anaphase-promoting com 99.6 1E-11 2.2E-16 137.2 41.5 269 318-608 268-536 (559)
60 KOG2396 HAT (Half-A-TPR) repea 99.6 8.4E-12 1.8E-16 139.5 40.8 435 82-565 90-559 (568)
61 KOG1126 DNA-binding cell divis 99.6 1.5E-13 3.2E-18 158.8 27.0 292 79-459 335-626 (638)
62 KOG1258 mRNA processing protei 99.6 9.4E-12 2E-16 143.3 38.6 401 80-510 62-487 (577)
63 COG3063 PilF Tfp pilus assembl 99.6 3.3E-13 7.1E-18 137.5 23.0 204 390-612 37-240 (250)
64 PRK12370 invasion protein regu 99.6 1.1E-12 2.3E-17 161.5 32.5 169 349-528 367-535 (553)
65 COG5107 RNA14 Pre-mRNA 3'-end 99.6 2.3E-12 4.9E-17 141.1 30.7 435 52-564 31-530 (660)
66 PRK12370 invasion protein regu 99.6 1.2E-12 2.5E-17 161.1 32.1 263 309-601 257-529 (553)
67 PRK10747 putative protoheme IX 99.6 1E-11 2.2E-16 146.5 38.5 294 112-529 97-391 (398)
68 TIGR00540 hemY_coli hemY prote 99.6 2.3E-12 4.9E-17 152.8 32.2 295 75-488 96-400 (409)
69 KOG0113 U1 small nuclear ribon 99.5 6.6E-14 1.4E-18 145.4 14.6 94 1017-1112 88-182 (335)
70 TIGR01659 sex-lethal sex-letha 99.5 8.3E-14 1.8E-18 158.0 16.1 82 1031-1113 193-277 (346)
71 KOG0548 Molecular co-chaperone 99.5 7.1E-11 1.5E-15 133.7 38.6 414 76-545 15-472 (539)
72 KOG0624 dsRNA-activated protei 99.5 3.3E-11 7.2E-16 128.1 33.2 162 318-489 195-372 (504)
73 KOG2003 TPR repeat-containing 99.5 6.7E-12 1.4E-16 137.0 28.7 453 35-548 207-709 (840)
74 KOG0107 Alternative splicing f 99.5 1.1E-13 2.4E-18 133.2 12.6 80 1030-1115 9-89 (195)
75 KOG2003 TPR repeat-containing 99.5 4.2E-12 9.2E-17 138.5 24.8 440 97-569 201-693 (840)
76 PRK10747 putative protoheme IX 99.5 6.9E-11 1.5E-15 139.5 35.3 291 77-488 98-391 (398)
77 KOG1173 Anaphase-promoting com 99.5 2.9E-10 6.3E-15 129.1 37.7 269 313-593 245-541 (611)
78 PF05843 Suf: Suppressor of fo 99.5 4.2E-13 9.1E-18 149.8 14.7 136 99-237 3-139 (280)
79 PRK11189 lipoprotein NlpI; Pro 99.5 8.9E-12 1.9E-16 140.9 25.1 150 77-233 40-193 (296)
80 KOG0548 Molecular co-chaperone 99.5 3.9E-11 8.5E-16 135.8 29.3 408 40-508 13-470 (539)
81 TIGR02521 type_IV_pilW type IV 99.5 1.5E-11 3.2E-16 133.2 25.4 197 318-530 37-234 (234)
82 TIGR02521 type_IV_pilW type IV 99.5 2.5E-11 5.4E-16 131.5 27.1 198 354-563 31-230 (234)
83 KOG1173 Anaphase-promoting com 99.4 6E-11 1.3E-15 134.5 29.6 359 113-533 155-523 (611)
84 COG3063 PilF Tfp pilus assembl 99.4 2.1E-11 4.5E-16 124.5 22.5 183 357-549 38-223 (250)
85 COG2956 Predicted N-acetylgluc 99.4 1.8E-09 3.9E-14 115.0 36.9 302 172-567 41-353 (389)
86 KOG4162 Predicted calmodulin-b 99.4 1.9E-09 4.2E-14 126.6 40.6 417 95-570 321-788 (799)
87 PRK11189 lipoprotein NlpI; Pro 99.4 5.7E-11 1.2E-15 134.3 27.2 219 327-567 41-267 (296)
88 KOG4162 Predicted calmodulin-b 99.4 1.8E-10 3.9E-15 135.0 31.1 396 39-490 367-786 (799)
89 KOG0121 Nuclear cap-binding pr 99.4 5.5E-13 1.2E-17 121.2 7.9 79 1030-1109 35-114 (153)
90 KOG1127 TPR repeat-containing 99.4 1.6E-10 3.5E-15 137.8 30.3 154 78-237 473-628 (1238)
91 TIGR01648 hnRNP-R-Q heterogene 99.4 2.4E-12 5.2E-17 153.3 15.2 74 1031-1113 233-309 (578)
92 KOG0624 dsRNA-activated protei 99.4 7.1E-10 1.5E-14 118.2 31.9 330 92-536 33-378 (504)
93 TIGR01659 sex-lethal sex-letha 99.4 3.5E-12 7.6E-17 144.8 15.7 83 1027-1110 103-186 (346)
94 KOG0128 RNA-binding protein SA 99.4 2E-09 4.4E-14 127.1 36.5 394 116-606 96-524 (881)
95 KOG0149 Predicted RNA-binding 99.4 1.7E-12 3.8E-17 131.3 9.4 80 1028-1108 9-88 (247)
96 KOG1125 TPR repeat-containing 99.4 3.8E-11 8.2E-16 137.0 21.0 232 112-419 298-529 (579)
97 KOG1156 N-terminal acetyltrans 99.4 7.1E-09 1.5E-13 119.7 39.0 393 77-526 21-466 (700)
98 KOG1174 Anaphase-promoting com 99.4 4.5E-10 9.8E-15 122.5 27.6 312 90-491 188-504 (564)
99 KOG1129 TPR repeat-containing 99.3 3.2E-11 7E-16 127.5 17.2 192 34-240 112-325 (478)
100 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 7.8E-12 1.7E-16 145.7 14.3 83 1029-1112 267-350 (352)
101 KOG4207 Predicted splicing fac 99.3 6.7E-12 1.5E-16 123.6 11.3 79 1031-1110 13-92 (256)
102 KOG0125 Ataxin 2-binding prote 99.3 1.2E-11 2.7E-16 130.2 11.4 79 1030-1111 95-174 (376)
103 KOG1127 TPR repeat-containing 99.3 3.4E-09 7.5E-14 126.7 32.7 182 370-563 474-657 (1238)
104 KOG1156 N-terminal acetyltrans 99.3 3.2E-08 7E-13 114.4 39.0 406 102-565 13-434 (700)
105 PLN02789 farnesyltranstransfer 99.3 1.3E-09 2.8E-14 123.1 27.7 220 309-544 34-266 (320)
106 KOG0122 Translation initiation 99.3 3.3E-11 7.1E-16 122.4 12.8 81 1030-1111 188-269 (270)
107 PF00076 RRM_1: RNA recognitio 99.3 2.3E-11 5E-16 105.5 9.0 69 1034-1104 1-70 (70)
108 PLN02789 farnesyltranstransfer 99.2 3.1E-09 6.7E-14 120.1 27.6 201 361-570 44-255 (320)
109 KOG1129 TPR repeat-containing 99.2 1.1E-10 2.4E-15 123.5 14.4 130 102-239 228-358 (478)
110 PLN03120 nucleic acid binding 99.2 4.2E-11 9E-16 126.5 11.1 77 1031-1111 4-80 (260)
111 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 3.4E-11 7.4E-16 140.3 10.7 81 1031-1112 3-84 (352)
112 KOG2376 Signal recognition par 99.2 2.9E-07 6.3E-12 105.6 41.2 445 98-612 14-491 (652)
113 cd05804 StaR_like StaR_like; a 99.2 1.4E-08 3.1E-13 118.5 32.4 198 321-528 123-336 (355)
114 PLN03213 repressor of silencin 99.2 3.7E-11 8E-16 131.9 9.5 77 1029-1110 8-87 (759)
115 COG2956 Predicted N-acetylgluc 99.2 3.9E-08 8.4E-13 105.0 31.3 250 319-593 76-329 (389)
116 KOG1125 TPR repeat-containing 99.2 9.3E-10 2E-14 125.8 19.1 258 321-601 294-564 (579)
117 TIGR01645 half-pint poly-U bin 99.2 1.4E-10 3E-15 138.5 12.2 82 1030-1112 203-285 (612)
118 KOG0148 Apoptosis-promoting RN 99.2 2.9E-10 6.3E-15 116.9 12.8 78 1030-1114 163-241 (321)
119 KOG0126 Predicted RNA-binding 99.2 5.1E-12 1.1E-16 122.1 -0.1 80 1028-1108 32-112 (219)
120 PLN03121 nucleic acid binding 99.1 1.4E-10 3.1E-15 120.2 10.2 76 1030-1109 4-79 (243)
121 TIGR03302 OM_YfiO outer membra 99.1 3.8E-09 8.3E-14 115.6 22.1 177 348-530 27-234 (235)
122 PF14259 RRM_6: RNA recognitio 99.1 1.6E-10 3.4E-15 100.3 8.5 69 1034-1104 1-70 (70)
123 cd05804 StaR_like StaR_like; a 99.1 6.2E-08 1.3E-12 113.1 33.3 314 92-488 1-337 (355)
124 KOG0130 RNA-binding protein RB 99.1 1.4E-10 3.1E-15 106.4 8.1 84 1029-1113 70-154 (170)
125 KOG3060 Uncharacterized conser 99.1 1E-08 2.2E-13 106.1 22.6 191 368-567 26-222 (289)
126 TIGR01645 half-pint poly-U bin 99.1 1.4E-10 3E-15 138.4 10.4 79 1030-1109 106-185 (612)
127 PRK10370 formate-dependent nit 99.1 2.1E-09 4.5E-14 113.6 17.1 122 77-201 53-177 (198)
128 KOG0146 RNA-binding protein ET 99.1 7.2E-11 1.6E-15 120.4 5.7 85 1028-1113 282-367 (371)
129 KOG2376 Signal recognition par 99.1 7.6E-07 1.6E-11 102.3 36.5 446 77-570 26-492 (652)
130 PF12569 NARP1: NMDA receptor- 99.1 9.2E-08 2E-12 114.2 30.9 99 98-198 5-107 (517)
131 KOG0145 RNA-binding protein EL 99.1 7.8E-10 1.7E-14 112.6 10.6 85 1027-1112 37-122 (360)
132 KOG1840 Kinesin light chain [C 99.1 3.9E-08 8.4E-13 116.0 26.4 249 349-608 194-479 (508)
133 KOG1840 Kinesin light chain [C 99.1 3E-08 6.5E-13 116.9 25.2 258 129-488 195-480 (508)
134 PRK10370 formate-dependent nit 99.0 5.5E-09 1.2E-13 110.3 16.2 123 367-491 52-177 (198)
135 PRK15359 type III secretion sy 99.0 6.6E-09 1.4E-13 104.0 15.7 115 81-201 11-125 (144)
136 PRK15359 type III secretion sy 99.0 6.4E-09 1.4E-13 104.1 15.3 121 335-468 16-136 (144)
137 PF12569 NARP1: NMDA receptor- 99.0 2.5E-07 5.4E-12 110.6 31.2 304 70-489 11-336 (517)
138 PRK14720 transcript cleavage f 99.0 1.1E-07 2.3E-12 118.3 28.8 185 126-463 24-208 (906)
139 KOG4212 RNA-binding protein hn 99.0 2.5E-09 5.3E-14 116.4 12.4 79 1030-1110 43-123 (608)
140 KOG0111 Cyclophilin-type pepti 99.0 2.8E-10 6E-15 113.0 4.4 82 1030-1112 9-91 (298)
141 KOG0145 RNA-binding protein EL 99.0 1.7E-09 3.8E-14 110.1 10.1 81 1030-1111 277-358 (360)
142 PRK15179 Vi polysaccharide bio 99.0 3.1E-08 6.6E-13 122.5 23.1 137 351-489 83-219 (694)
143 KOG0148 Apoptosis-promoting RN 99.0 8.2E-10 1.8E-14 113.6 7.8 82 1031-1113 62-144 (321)
144 TIGR01628 PABP-1234 polyadenyl 99.0 7.2E-09 1.6E-13 128.4 17.2 80 1030-1111 284-364 (562)
145 PRK14720 transcript cleavage f 99.0 6.8E-08 1.5E-12 120.0 24.8 207 349-586 26-268 (906)
146 TIGR01628 PABP-1234 polyadenyl 99.0 2.1E-09 4.5E-14 133.2 11.1 76 1033-1109 2-78 (562)
147 TIGR01622 SF-CC1 splicing fact 99.0 2.1E-09 4.6E-14 129.9 10.9 81 1028-1109 86-166 (457)
148 KOG0550 Molecular chaperone (D 98.9 3E-08 6.5E-13 109.0 18.4 276 112-489 62-352 (486)
149 KOG3060 Uncharacterized conser 98.9 1.4E-07 3E-12 97.9 22.1 174 355-536 50-228 (289)
150 TIGR03302 OM_YfiO outer membra 98.9 2.4E-08 5.1E-13 109.4 17.4 166 66-234 36-232 (235)
151 COG5010 TadD Flp pilus assembl 98.9 7.8E-08 1.7E-12 101.0 19.7 167 373-549 52-218 (257)
152 KOG0127 Nucleolar protein fibr 98.9 3.8E-09 8.2E-14 118.4 10.5 84 1027-1111 288-378 (678)
153 smart00362 RRM_2 RNA recogniti 98.9 4.4E-09 9.5E-14 91.0 8.7 71 1033-1106 1-72 (72)
154 PRK15179 Vi polysaccharide bio 98.9 4.6E-08 1E-12 121.0 20.8 154 80-239 69-222 (694)
155 TIGR01648 hnRNP-R-Q heterogene 98.9 4.1E-09 8.8E-14 126.0 10.6 74 1030-1105 57-132 (578)
156 TIGR01642 U2AF_lg U2 snRNP aux 98.9 4.2E-09 9.2E-14 129.2 11.1 80 1030-1110 294-374 (509)
157 TIGR02552 LcrH_SycD type III s 98.9 4.5E-08 9.8E-13 97.0 15.8 115 84-201 4-118 (135)
158 KOG0108 mRNA cleavage and poly 98.9 2.9E-09 6.2E-14 122.3 8.1 81 1032-1113 19-100 (435)
159 KOG0124 Polypyrimidine tract-b 98.9 1.2E-09 2.6E-14 116.0 4.4 77 1031-1108 113-190 (544)
160 smart00360 RRM RNA recognition 98.9 6.9E-09 1.5E-13 89.4 8.2 70 1036-1106 1-71 (71)
161 TIGR01622 SF-CC1 splicing fact 98.9 5.9E-09 1.3E-13 126.0 10.6 79 1031-1110 186-265 (457)
162 KOG1128 Uncharacterized conser 98.9 5.3E-08 1.2E-12 114.1 17.7 214 316-564 402-615 (777)
163 PF08424 NRDE-2: NRDE-2, neces 98.9 9.4E-08 2E-12 108.9 19.5 154 81-234 3-183 (321)
164 KOG0114 Predicted RNA-binding 98.8 9.2E-09 2E-13 90.5 7.9 76 1030-1109 17-93 (124)
165 KOG0117 Heterogeneous nuclear 98.8 1E-08 2.2E-13 112.8 10.0 76 1030-1106 82-159 (506)
166 COG3071 HemY Uncharacterized e 98.8 6.8E-06 1.5E-10 91.0 31.2 159 357-528 232-390 (400)
167 KOG0117 Heterogeneous nuclear 98.8 1.7E-08 3.7E-13 111.0 10.8 74 1030-1112 258-332 (506)
168 COG0724 RNA-binding proteins ( 98.8 1.9E-08 4.1E-13 113.0 10.0 78 1031-1109 115-193 (306)
169 KOG0144 RNA-binding protein CU 98.8 2.1E-08 4.5E-13 109.7 9.5 82 1027-1109 30-115 (510)
170 KOG0131 Splicing factor 3b, su 98.8 9.8E-09 2.1E-13 100.1 6.0 79 1030-1109 8-87 (203)
171 KOG0550 Molecular chaperone (D 98.7 1E-06 2.2E-11 97.2 21.5 272 77-456 63-353 (486)
172 PRK15363 pathogenicity island 98.7 2.5E-07 5.4E-12 91.2 15.0 113 88-203 25-138 (157)
173 KOG0144 RNA-binding protein CU 98.7 9.3E-09 2E-13 112.4 5.3 83 1030-1114 123-209 (510)
174 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.7 2.8E-08 6.1E-13 120.0 10.1 72 1031-1109 2-76 (481)
175 KOG1128 Uncharacterized conser 98.7 2.6E-06 5.7E-11 100.3 25.7 206 172-449 403-613 (777)
176 TIGR02552 LcrH_SycD type III s 98.7 2.9E-07 6.3E-12 91.1 15.6 109 349-459 12-120 (135)
177 KOG0127 Nucleolar protein fibr 98.7 2.9E-08 6.3E-13 111.5 8.8 80 1031-1112 117-197 (678)
178 cd00590 RRM RRM (RNA recogniti 98.7 7.2E-08 1.6E-12 83.8 9.5 72 1033-1106 1-73 (74)
179 COG5010 TadD Flp pilus assembl 98.7 1.8E-06 3.8E-11 91.0 20.7 168 349-526 62-229 (257)
180 smart00361 RRM_1 RNA recogniti 98.7 5.2E-08 1.1E-12 84.2 7.9 62 1045-1106 2-70 (70)
181 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.7 1.4E-07 2.9E-12 114.0 14.1 77 1029-1111 273-351 (481)
182 KOG0131 Splicing factor 3b, su 98.7 3.1E-08 6.8E-13 96.6 6.7 82 1031-1112 96-178 (203)
183 KOG4209 Splicing factor RNPS1, 98.7 5.8E-08 1.2E-12 103.4 9.3 89 1028-1117 98-186 (231)
184 KOG0415 Predicted peptidyl pro 98.7 7.2E-08 1.6E-12 102.7 9.1 80 1030-1110 238-318 (479)
185 PRK04841 transcriptional regul 98.7 7.8E-05 1.7E-09 98.5 40.1 211 320-532 539-764 (903)
186 COG3071 HemY Uncharacterized e 98.7 7.7E-05 1.7E-09 82.9 32.7 128 355-488 264-391 (400)
187 KOG0153 Predicted RNA-binding 98.7 6.8E-08 1.5E-12 103.4 8.8 78 1027-1111 224-303 (377)
188 KOG0147 Transcriptional coacti 98.6 2.3E-08 5E-13 113.4 5.3 79 1030-1109 277-356 (549)
189 KOG3617 WD40 and TPR repeat-co 98.6 0.00025 5.5E-09 84.1 37.4 162 47-231 713-884 (1416)
190 KOG0553 TPR repeat-containing 98.6 3.7E-07 8.1E-12 97.6 12.2 111 432-550 90-200 (304)
191 KOG0109 RNA-binding protein LA 98.6 6.2E-08 1.3E-12 101.0 5.8 71 1032-1111 3-74 (346)
192 COG4235 Cytochrome c biogenesi 98.6 9.4E-07 2E-11 95.4 15.0 122 77-201 136-260 (287)
193 TIGR01642 U2AF_lg U2 snRNP aux 98.6 3.6E-07 7.8E-12 112.2 12.7 79 1029-1108 173-257 (509)
194 KOG4205 RNA-binding protein mu 98.5 2.4E-07 5.2E-12 102.2 9.7 82 1030-1112 96-177 (311)
195 PF13893 RRM_5: RNA recognitio 98.5 3.8E-07 8.3E-12 75.0 8.0 55 1048-1108 1-56 (56)
196 KOG4205 RNA-binding protein mu 98.5 9.4E-08 2E-12 105.4 4.4 82 1030-1112 5-86 (311)
197 COG4783 Putative Zn-dependent 98.5 4.8E-06 1E-10 94.6 18.0 140 88-233 297-436 (484)
198 COG5191 Uncharacterized conser 98.5 1.7E-07 3.7E-12 99.1 6.0 95 121-218 95-189 (435)
199 KOG4661 Hsp27-ERE-TATA-binding 98.5 6.4E-07 1.4E-11 100.6 10.6 83 1029-1112 403-486 (940)
200 COG4783 Putative Zn-dependent 98.5 5.3E-05 1.1E-09 86.3 25.9 138 385-531 303-440 (484)
201 KOG0124 Polypyrimidine tract-b 98.4 3.1E-07 6.7E-12 98.1 6.7 80 1030-1110 209-289 (544)
202 PLN03088 SGT1, suppressor of 98.4 3.7E-06 7.9E-11 97.5 15.8 95 394-490 8-102 (356)
203 TIGR02795 tol_pal_ybgF tol-pal 98.4 6.2E-06 1.4E-10 79.2 14.2 109 424-537 3-114 (119)
204 PRK15363 pathogenicity island 98.4 1.1E-05 2.3E-10 79.8 15.2 100 349-449 29-129 (157)
205 KOG4208 Nucleolar RNA-binding 98.4 7.7E-07 1.7E-11 89.2 7.3 79 1031-1110 49-129 (214)
206 PLN03088 SGT1, suppressor of 98.4 2.4E-06 5.2E-11 99.1 12.6 92 77-170 16-107 (356)
207 KOG0553 TPR repeat-containing 98.4 4.7E-06 1E-10 89.4 13.6 98 319-425 88-185 (304)
208 KOG0533 RRM motif-containing p 98.3 3.9E-06 8.4E-11 89.0 12.1 80 1028-1109 80-160 (243)
209 KOG3617 WD40 and TPR repeat-co 98.3 0.00043 9.2E-09 82.2 29.4 86 386-486 910-995 (1416)
210 KOG3785 Uncharacterized conser 98.3 0.00096 2.1E-08 72.5 29.4 304 145-564 34-351 (557)
211 KOG4206 Spliceosomal protein s 98.3 1.5E-06 3.2E-11 88.9 7.8 79 1030-1112 8-91 (221)
212 KOG0110 RNA-binding protein (R 98.3 4.7E-07 1E-11 105.7 4.7 81 1030-1111 612-693 (725)
213 KOG0123 Polyadenylate-binding 98.3 1.6E-06 3.4E-11 99.5 8.2 73 1033-1109 78-151 (369)
214 PRK04841 transcriptional regul 98.3 0.0036 7.8E-08 82.9 41.0 283 318-612 458-764 (903)
215 PF08424 NRDE-2: NRDE-2, neces 98.3 3.8E-05 8.2E-10 87.7 19.2 152 375-529 6-184 (321)
216 cd00189 TPR Tetratricopeptide 98.2 9.1E-06 2E-10 73.3 11.2 96 99-197 2-97 (100)
217 PF09976 TPR_21: Tetratricopep 98.2 4.3E-05 9.4E-10 76.7 17.0 117 366-485 23-145 (145)
218 KOG1457 RNA binding protein (c 98.2 1.3E-05 2.9E-10 80.8 12.5 84 1030-1113 33-120 (284)
219 KOG0132 RNA polymerase II C-te 98.2 2.3E-06 4.9E-11 100.6 7.5 75 1031-1112 421-496 (894)
220 PF09976 TPR_21: Tetratricopep 98.2 5E-05 1.1E-09 76.2 16.5 116 112-232 24-145 (145)
221 KOG0106 Alternative splicing f 98.2 1.7E-06 3.7E-11 89.6 5.5 72 1032-1112 2-74 (216)
222 KOG0110 RNA-binding protein (R 98.2 3.3E-06 7.1E-11 98.9 8.4 78 1032-1109 516-596 (725)
223 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.6E-05 5.6E-10 74.9 13.4 102 97-201 2-109 (119)
224 cd00189 TPR Tetratricopeptide 98.2 1.7E-05 3.7E-10 71.5 11.4 92 357-449 3-94 (100)
225 KOG0109 RNA-binding protein LA 98.1 2.6E-06 5.7E-11 89.2 5.7 75 1030-1113 77-152 (346)
226 KOG0146 RNA-binding protein ET 98.1 1.4E-06 2.9E-11 89.7 3.4 80 1031-1112 19-102 (371)
227 PF13432 TPR_16: Tetratricopep 98.1 7.5E-06 1.6E-10 69.6 7.5 64 102-167 2-65 (65)
228 KOG0226 RNA-binding proteins [ 98.1 3.2E-06 7E-11 87.0 6.0 83 1023-1106 182-265 (290)
229 PRK02603 photosystem I assembl 98.1 8.2E-05 1.8E-09 77.1 16.3 130 87-242 23-157 (172)
230 KOG4212 RNA-binding protein hn 98.1 4.6E-06 1E-10 91.5 7.0 73 1029-1107 534-607 (608)
231 PF13414 TPR_11: TPR repeat; P 98.1 1.5E-05 3.2E-10 68.7 8.7 67 96-164 2-69 (69)
232 PF12895 Apc3: Anaphase-promot 98.1 8.9E-06 1.9E-10 73.2 7.5 81 112-194 2-84 (84)
233 KOG3785 Uncharacterized conser 98.1 0.0088 1.9E-07 65.3 30.9 150 70-236 30-182 (557)
234 PF14559 TPR_19: Tetratricopep 98.1 1.1E-05 2.4E-10 69.2 7.7 64 112-175 4-67 (68)
235 PF04733 Coatomer_E: Coatomer 98.1 4.5E-05 9.8E-10 85.4 14.4 204 351-570 63-270 (290)
236 PF13414 TPR_11: TPR repeat; P 98.1 1.5E-05 3.3E-10 68.6 8.2 67 422-489 2-69 (69)
237 PRK11906 transcriptional regul 98.0 0.00015 3.2E-09 83.3 17.5 151 369-527 273-435 (458)
238 PF14938 SNAP: Soluble NSF att 98.0 0.00024 5.2E-09 79.9 19.2 171 362-567 43-227 (282)
239 COG4235 Cytochrome c biogenesi 98.0 0.00017 3.7E-09 78.2 16.8 121 369-491 137-260 (287)
240 KOG1548 Transcription elongati 98.0 1.2E-05 2.6E-10 86.4 7.8 80 1030-1109 133-219 (382)
241 PRK10153 DNA-binding transcrip 98.0 0.00019 4.1E-09 86.8 18.9 138 351-490 334-485 (517)
242 PF12895 Apc3: Anaphase-promot 98.0 2.6E-05 5.5E-10 70.2 8.5 80 367-448 2-83 (84)
243 KOG0543 FKBP-type peptidyl-pro 98.0 9.8E-05 2.1E-09 82.7 14.6 147 357-530 211-357 (397)
244 PF13432 TPR_16: Tetratricopep 98.0 2.4E-05 5.2E-10 66.5 7.3 63 138-201 2-64 (65)
245 PRK10153 DNA-binding transcrip 98.0 0.00022 4.8E-09 86.2 18.1 145 382-536 331-490 (517)
246 KOG1995 Conserved Zn-finger pr 97.9 3.1E-05 6.7E-10 84.5 9.4 86 1028-1113 63-156 (351)
247 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00016 3.5E-09 83.6 15.8 120 358-482 173-292 (395)
248 CHL00033 ycf3 photosystem I as 97.9 9.5E-05 2.1E-09 76.3 12.7 101 388-489 35-151 (168)
249 PRK11906 transcriptional regul 97.9 0.00017 3.7E-09 82.9 15.5 123 78-201 273-405 (458)
250 CHL00033 ycf3 photosystem I as 97.9 0.00012 2.5E-09 75.6 13.0 99 78-178 14-117 (168)
251 PRK02603 photosystem I assembl 97.9 0.00018 3.8E-09 74.6 14.3 118 351-490 32-152 (172)
252 PRK10803 tol-pal system protei 97.9 0.00017 3.6E-09 79.4 14.5 104 96-201 141-250 (263)
253 PRK10803 tol-pal system protei 97.9 0.00029 6.3E-09 77.6 15.8 92 437-533 157-251 (263)
254 KOG4340 Uncharacterized conser 97.9 0.043 9.2E-07 58.9 30.5 414 72-532 20-447 (459)
255 PF14559 TPR_19: Tetratricopep 97.9 4.6E-05 9.9E-10 65.4 7.4 65 366-431 3-67 (68)
256 COG3898 Uncharacterized membra 97.8 0.061 1.3E-06 60.0 31.9 292 112-488 97-393 (531)
257 KOG4454 RNA binding protein (R 97.8 1.6E-05 3.6E-10 80.0 4.4 76 1031-1109 9-85 (267)
258 PRK15331 chaperone protein Sic 97.8 0.00022 4.8E-09 70.9 12.0 102 92-196 32-133 (165)
259 PF14938 SNAP: Soluble NSF att 97.8 0.00042 9.2E-09 77.9 16.1 180 307-490 30-228 (282)
260 PRK10866 outer membrane biogen 97.8 0.003 6.4E-08 69.1 22.0 166 355-525 33-238 (243)
261 COG5191 Uncharacterized conser 97.7 6.6E-05 1.4E-09 80.0 7.6 96 372-469 91-187 (435)
262 KOG0123 Polyadenylate-binding 97.7 6.3E-05 1.4E-09 86.5 8.0 73 1032-1111 2-75 (369)
263 PF04733 Coatomer_E: Coatomer 97.7 0.00067 1.4E-08 76.1 15.9 160 363-536 111-273 (290)
264 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00033 7.1E-09 81.1 13.7 133 94-235 164-298 (395)
265 COG4700 Uncharacterized protei 97.7 0.0051 1.1E-07 61.6 19.5 145 369-523 71-217 (251)
266 PF08311 Mad3_BUB1_I: Mad3/BUB 97.7 0.00043 9.3E-09 67.2 12.2 108 116-232 2-126 (126)
267 KOG2053 Mitochondrial inherita 97.7 0.29 6.3E-06 60.4 45.4 116 113-229 23-138 (932)
268 PF13525 YfiO: Outer membrane 97.7 0.0019 4.2E-08 68.7 18.1 157 357-519 8-198 (203)
269 KOG4210 Nuclear localization s 97.7 3.3E-05 7.1E-10 85.5 4.5 81 1031-1112 184-265 (285)
270 COG4700 Uncharacterized protei 97.7 0.0039 8.4E-08 62.4 18.2 133 354-488 89-223 (251)
271 PF13371 TPR_9: Tetratricopept 97.7 0.00017 3.7E-09 62.7 8.1 61 112-172 8-68 (73)
272 KOG4211 Splicing factor hnRNP- 97.7 0.00026 5.6E-09 80.1 11.3 76 1032-1108 104-179 (510)
273 KOG0151 Predicted splicing reg 97.7 0.00012 2.7E-09 85.4 9.0 83 1028-1110 171-256 (877)
274 COG0457 NrfG FOG: TPR repeat [ 97.7 0.057 1.2E-06 56.9 29.4 202 355-567 60-267 (291)
275 PF12688 TPR_5: Tetratrico pep 97.7 0.001 2.2E-08 63.8 13.6 94 356-450 3-102 (120)
276 KOG4849 mRNA cleavage factor I 97.6 0.00012 2.7E-09 78.3 7.9 74 1031-1105 80-156 (498)
277 PF02259 FAT: FAT domain; Int 97.6 0.049 1.1E-06 63.3 30.5 121 350-471 142-305 (352)
278 PF13525 YfiO: Outer membrane 97.6 0.0015 3.3E-08 69.5 16.2 157 387-545 4-187 (203)
279 PF08311 Mad3_BUB1_I: Mad3/BUB 97.6 0.00054 1.2E-08 66.5 11.4 92 352-449 20-125 (126)
280 KOG3616 Selective LIM binding 97.6 0.12 2.6E-06 61.3 31.7 196 319-533 772-1029(1636)
281 PF12688 TPR_5: Tetratrico pep 97.6 0.0023 4.9E-08 61.4 14.8 96 98-196 2-103 (120)
282 PF13428 TPR_14: Tetratricopep 97.6 0.00013 2.9E-09 56.5 5.2 42 134-175 2-43 (44)
283 COG0457 NrfG FOG: TPR repeat [ 97.5 0.016 3.5E-07 61.2 23.1 196 321-531 68-268 (291)
284 PRK10866 outer membrane biogen 97.5 0.0043 9.2E-08 67.9 18.5 156 387-545 31-221 (243)
285 KOG4211 Splicing factor hnRNP- 97.5 0.00028 6E-09 79.9 8.3 75 1030-1108 9-83 (510)
286 KOG1855 Predicted RNA-binding 97.5 0.00034 7.5E-09 77.5 8.5 67 1028-1094 228-306 (484)
287 PF13371 TPR_9: Tetratricopept 97.5 0.00054 1.2E-08 59.6 8.3 66 364-430 5-70 (73)
288 COG4785 NlpI Lipoprotein NlpI, 97.5 0.0077 1.7E-07 61.7 17.3 214 312-545 65-282 (297)
289 KOG4660 Protein Mei2, essentia 97.5 0.00015 3.2E-09 83.4 5.7 69 1030-1104 74-143 (549)
290 KOG0543 FKBP-type peptidyl-pro 97.4 0.0019 4.2E-08 72.6 14.2 131 357-489 218-357 (397)
291 COG3898 Uncharacterized membra 97.4 0.18 3.8E-06 56.5 28.5 247 325-605 133-389 (531)
292 PRK15331 chaperone protein Sic 97.4 0.0031 6.8E-08 62.9 13.6 108 349-459 32-139 (165)
293 KOG0890 Protein kinase of the 97.4 0.31 6.8E-06 66.0 35.0 211 350-564 1666-1922(2382)
294 KOG4340 Uncharacterized conser 97.4 0.3 6.6E-06 52.6 29.8 82 113-195 24-105 (459)
295 PF10429 Mtr2: Nuclear pore RN 97.4 0.00051 1.1E-08 67.1 7.3 100 718-822 3-109 (166)
296 KOG0147 Transcriptional coacti 97.3 0.00011 2.4E-09 84.2 2.3 81 1026-1107 174-254 (549)
297 KOG3616 Selective LIM binding 97.3 0.27 5.8E-06 58.6 29.2 44 112-156 457-500 (1636)
298 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0042 9.2E-08 71.6 14.8 69 92-162 70-141 (453)
299 PF13281 DUF4071: Domain of un 97.3 0.03 6.5E-07 64.0 21.4 177 354-533 141-339 (374)
300 KOG4234 TPR repeat-containing 97.3 0.0025 5.4E-08 64.4 11.1 92 365-458 106-202 (271)
301 KOG4234 TPR repeat-containing 97.2 0.0035 7.6E-08 63.4 11.6 95 395-490 102-200 (271)
302 PF06552 TOM20_plant: Plant sp 97.2 0.0038 8.3E-08 62.8 11.5 87 80-166 8-113 (186)
303 cd00531 NTF2_like Nuclear tran 97.1 0.0042 9E-08 59.4 11.2 113 723-835 2-123 (124)
304 PF13428 TPR_14: Tetratricopep 97.1 0.0011 2.3E-08 51.4 5.5 42 355-396 2-43 (44)
305 smart00777 Mad3_BUB1_I Mad3/BU 97.1 0.0049 1.1E-07 59.1 10.7 91 352-448 20-124 (125)
306 KOG2053 Mitochondrial inherita 97.1 1.4 3.1E-05 54.6 39.7 228 145-459 21-261 (932)
307 KOG3081 Vesicle coat complex C 97.1 0.17 3.6E-06 54.1 22.6 184 352-549 70-257 (299)
308 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0036 7.8E-08 72.1 10.7 71 348-418 69-142 (453)
309 PF04059 RRM_2: RNA recognitio 97.0 0.0043 9.4E-08 56.5 9.1 78 1032-1110 2-86 (97)
310 COG1729 Uncharacterized protei 97.0 0.0078 1.7E-07 64.8 12.4 99 433-536 151-252 (262)
311 KOG4555 TPR repeat-containing 97.0 0.0094 2E-07 56.2 11.2 92 433-528 53-144 (175)
312 PF04184 ST7: ST7 protein; In 97.0 0.022 4.7E-07 65.9 16.5 167 366-540 180-387 (539)
313 KOG3081 Vesicle coat complex C 97.0 0.11 2.4E-06 55.4 20.3 200 390-612 74-275 (299)
314 KOG0106 Alternative splicing f 96.9 0.0013 2.8E-08 68.5 5.9 67 1030-1105 98-165 (216)
315 KOG0120 Splicing factor U2AF, 96.9 0.00064 1.4E-08 79.2 4.0 80 1030-1110 288-368 (500)
316 KOG1585 Protein required for f 96.9 0.17 3.7E-06 53.2 20.7 205 356-602 33-250 (308)
317 KOG4555 TPR repeat-containing 96.9 0.012 2.5E-07 55.5 11.1 92 365-488 54-145 (175)
318 PF08777 RRM_3: RNA binding mo 96.9 0.0019 4E-08 60.4 6.0 69 1031-1106 1-75 (105)
319 PF13424 TPR_12: Tetratricopep 96.8 0.0032 6.9E-08 55.5 6.9 74 455-529 2-76 (78)
320 KOG4648 Uncharacterized conser 96.8 0.0038 8.3E-08 67.7 8.6 94 395-490 104-197 (536)
321 PF13512 TPR_18: Tetratricopep 96.8 0.034 7.4E-07 54.4 14.3 20 515-534 115-134 (142)
322 KOG4642 Chaperone-dependent E3 96.8 0.011 2.3E-07 61.8 11.4 101 113-214 24-126 (284)
323 KOG1585 Protein required for f 96.8 0.14 2.9E-06 54.0 18.8 194 319-525 38-253 (308)
324 smart00386 HAT HAT (Half-A-TPR 96.7 0.0026 5.7E-08 45.3 4.4 32 147-178 1-32 (33)
325 PF02259 FAT: FAT domain; Int 96.7 1.6 3.4E-05 50.6 30.1 120 385-510 143-304 (352)
326 COG4785 NlpI Lipoprotein NlpI, 96.7 0.27 5.8E-06 50.9 19.8 203 368-608 60-266 (297)
327 COG1729 Uncharacterized protei 96.7 0.02 4.3E-07 61.8 12.5 97 393-490 146-247 (262)
328 PF13512 TPR_18: Tetratricopep 96.7 0.038 8.3E-07 54.0 13.3 72 459-534 11-82 (142)
329 KOG4648 Uncharacterized conser 96.7 0.009 1.9E-07 65.0 9.8 105 430-542 104-208 (536)
330 KOG1586 Protein required for f 96.6 0.12 2.6E-06 54.0 17.1 148 368-533 28-188 (288)
331 smart00777 Mad3_BUB1_I Mad3/BU 96.6 0.014 2.9E-07 56.1 9.6 105 117-230 3-124 (125)
332 KOG2202 U2 snRNP splicing fact 96.6 0.0045 9.7E-08 65.0 6.6 61 1046-1108 83-145 (260)
333 KOG0921 Dosage compensation co 96.6 0.0031 6.7E-08 76.3 6.0 32 794-826 873-904 (1282)
334 PF13431 TPR_17: Tetratricopep 96.6 0.0024 5.3E-08 46.2 3.2 32 122-153 2-33 (34)
335 KOG1457 RNA binding protein (c 96.4 0.0047 1E-07 62.9 5.4 64 1030-1098 209-273 (284)
336 COG4105 ComL DNA uptake lipopr 96.4 0.36 7.8E-06 51.9 19.7 166 354-545 34-213 (254)
337 PF06552 TOM20_plant: Plant sp 96.3 0.032 6.9E-07 56.3 10.7 64 115-178 7-80 (186)
338 PRK11634 ATP-dependent RNA hel 96.3 0.026 5.6E-07 70.4 12.3 63 1040-1110 496-562 (629)
339 PF13431 TPR_17: Tetratricopep 96.2 0.0048 1E-07 44.7 3.3 33 376-408 1-33 (34)
340 KOG1941 Acetylcholine receptor 96.2 0.52 1.1E-05 52.3 19.9 238 355-610 84-342 (518)
341 COG5175 MOT2 Transcriptional r 96.2 0.0079 1.7E-07 64.6 6.2 78 1030-1110 113-202 (480)
342 PF11608 Limkain-b1: Limkain b 96.2 0.024 5.2E-07 49.2 7.8 68 1032-1110 3-76 (90)
343 PF13424 TPR_12: Tetratricopep 96.2 0.015 3.3E-07 51.2 7.1 65 354-418 5-76 (78)
344 PF02184 HAT: HAT (Half-A-TPR) 96.2 0.0066 1.4E-07 42.5 3.5 29 148-177 2-30 (32)
345 KOG1941 Acetylcholine receptor 96.2 1.7 3.6E-05 48.5 23.5 155 77-234 20-191 (518)
346 KOG0530 Protein farnesyltransf 96.2 0.81 1.7E-05 48.9 20.3 213 366-594 55-279 (318)
347 PF02184 HAT: HAT (Half-A-TPR) 96.2 0.007 1.5E-07 42.3 3.5 30 114-144 2-31 (32)
348 KOG2610 Uncharacterized conser 96.2 0.13 2.7E-06 56.3 14.7 153 326-488 117-277 (491)
349 KOG1586 Protein required for f 96.1 1 2.3E-05 47.3 20.6 178 309-490 31-227 (288)
350 KOG2796 Uncharacterized conser 96.1 0.23 5E-06 52.7 15.7 135 391-532 180-319 (366)
351 smart00386 HAT HAT (Half-A-TPR 96.0 0.01 2.2E-07 42.1 4.1 31 114-144 2-32 (33)
352 KOG1190 Polypyrimidine tract-b 95.9 0.071 1.5E-06 59.4 11.7 74 1031-1110 297-372 (492)
353 KOG2796 Uncharacterized conser 95.8 0.87 1.9E-05 48.6 18.7 139 351-490 166-318 (366)
354 KOG1456 Heterogeneous nuclear 95.8 0.11 2.4E-06 57.0 12.6 71 1036-1112 127-200 (494)
355 PF03704 BTAD: Bacterial trans 95.8 0.09 2E-06 52.6 11.5 62 134-196 63-124 (146)
356 KOG0129 Predicted RNA-binding 95.8 0.023 4.9E-07 65.4 7.4 68 1030-1098 369-437 (520)
357 KOG3973 Uncharacterized conser 95.7 0.018 4E-07 62.2 6.2 12 721-732 206-217 (465)
358 KOG2041 WD40 repeat protein [G 95.7 5.1 0.00011 48.3 25.8 75 319-413 803-877 (1189)
359 PF15008 DUF4518: Domain of un 95.6 0.061 1.3E-06 58.0 9.7 119 716-836 124-259 (262)
360 COG3118 Thioredoxin domain-con 95.6 0.34 7.4E-06 52.9 15.2 123 365-489 145-267 (304)
361 COG4105 ComL DNA uptake lipopr 95.5 2.1 4.5E-05 46.2 20.6 151 359-533 76-238 (254)
362 PF05172 Nup35_RRM: Nup53/35/4 95.5 0.042 9.2E-07 50.5 6.9 77 1031-1108 6-89 (100)
363 PF04184 ST7: ST7 protein; In 95.5 1 2.2E-05 52.7 19.1 54 140-196 175-228 (539)
364 KOG0129 Predicted RNA-binding 95.4 0.03 6.4E-07 64.5 6.8 63 1030-1093 258-325 (520)
365 PF07719 TPR_2: Tetratricopept 95.4 0.034 7.3E-07 39.9 4.9 33 134-166 2-34 (34)
366 KOG0530 Protein farnesyltransf 95.4 0.28 6.1E-06 52.2 13.3 118 77-196 57-175 (318)
367 KOG3763 mRNA export factor TAP 95.4 0.073 1.6E-06 62.4 9.8 112 720-833 339-493 (585)
368 KOG0105 Alternative splicing f 95.3 0.17 3.6E-06 50.4 10.7 56 1030-1093 114-169 (241)
369 KOG1130 Predicted G-alpha GTPa 95.3 1.6 3.4E-05 49.4 19.4 82 367-448 208-300 (639)
370 PF10300 DUF3808: Protein of u 95.3 0.62 1.3E-05 56.2 18.0 161 359-527 193-375 (468)
371 PF07719 TPR_2: Tetratricopept 95.2 0.044 9.5E-07 39.3 5.1 34 498-532 1-34 (34)
372 KOG2610 Uncharacterized conser 95.2 0.95 2.1E-05 49.8 16.9 157 366-526 115-274 (491)
373 KOG1920 IkappaB kinase complex 95.2 6.9 0.00015 50.4 26.3 56 356-414 910-965 (1265)
374 PF13281 DUF4071: Domain of un 95.1 1.3 2.9E-05 50.9 19.0 172 386-566 139-335 (374)
375 KOG0921 Dosage compensation co 95.1 0.027 5.8E-07 68.6 5.4 17 579-595 656-672 (1282)
376 KOG4206 Spliceosomal protein s 95.1 0.07 1.5E-06 55.4 7.7 74 1030-1109 145-220 (221)
377 PF14605 Nup35_RRM_2: Nup53/35 95.1 0.045 9.7E-07 44.1 5.0 52 1032-1091 2-53 (53)
378 PF04910 Tcf25: Transcriptiona 94.9 0.87 1.9E-05 52.8 17.0 158 369-533 25-227 (360)
379 KOG2041 WD40 repeat protein [G 94.8 8 0.00017 46.7 24.1 187 321-546 769-956 (1189)
380 KOG0545 Aryl-hydrocarbon recep 94.7 0.82 1.8E-05 48.3 14.1 117 355-489 179-295 (329)
381 KOG0890 Protein kinase of the 94.7 29 0.00063 48.4 40.1 134 354-490 1629-1787(2382)
382 KOG1190 Polypyrimidine tract-b 94.6 0.021 4.5E-07 63.4 2.7 72 1030-1108 27-101 (492)
383 KOG1538 Uncharacterized conser 94.6 1.3 2.9E-05 52.5 16.9 80 427-525 751-830 (1081)
384 KOG1365 RNA-binding protein Fu 94.5 0.026 5.7E-07 61.9 3.1 74 1032-1105 162-237 (508)
385 KOG2066 Vacuolar assembly/sort 94.5 17 0.00036 45.0 28.0 63 113-178 370-434 (846)
386 PF03704 BTAD: Bacterial trans 94.5 0.21 4.7E-06 49.8 9.6 64 355-418 63-126 (146)
387 KOG4307 RNA binding protein RB 94.4 0.11 2.3E-06 61.5 8.0 77 1030-1107 865-943 (944)
388 PF00515 TPR_1: Tetratricopept 94.4 0.068 1.5E-06 38.4 4.3 32 134-165 2-33 (34)
389 KOG1130 Predicted G-alpha GTPa 94.3 0.46 1E-05 53.5 12.1 92 433-526 205-302 (639)
390 KOG4642 Chaperone-dependent E3 94.3 0.32 7E-06 51.1 10.2 116 322-445 20-139 (284)
391 KOG1538 Uncharacterized conser 94.2 5.2 0.00011 47.8 20.5 26 98-125 586-611 (1081)
392 PF08952 DUF1866: Domain of un 94.0 0.14 3E-06 50.0 6.6 58 1046-1112 51-108 (146)
393 KOG0545 Aryl-hydrocarbon recep 93.9 1.3 2.9E-05 46.8 13.7 73 389-463 231-303 (329)
394 PF10602 RPN7: 26S proteasome 93.8 2 4.4E-05 44.5 15.2 65 354-418 36-103 (177)
395 KOG0889 Histone acetyltransfer 93.7 53 0.0011 47.8 36.9 134 458-611 2812-2957(3550)
396 KOG3152 TBP-binding protein, a 93.7 0.037 8.1E-07 58.0 2.2 70 1032-1102 75-157 (278)
397 PF08631 SPO22: Meiosis protei 93.7 10 0.00022 42.4 22.0 156 366-527 5-185 (278)
398 COG3118 Thioredoxin domain-con 93.7 1.7 3.6E-05 47.7 14.6 116 112-234 147-265 (304)
399 KOG2300 Uncharacterized conser 93.6 19 0.0004 42.2 39.2 157 365-529 334-515 (629)
400 KOG1924 RhoA GTPase effector D 93.5 0.33 7.3E-06 58.4 9.6 10 725-734 420-429 (1102)
401 KOG2471 TPR repeat-containing 93.5 3.5 7.5E-05 47.8 17.1 128 48-178 225-380 (696)
402 KOG2253 U1 snRNP complex, subu 93.4 0.09 2E-06 62.4 4.8 66 1031-1106 40-106 (668)
403 COG1747 Uncharacterized N-term 93.3 22 0.00047 41.9 27.9 132 356-489 101-236 (711)
404 PF13181 TPR_8: Tetratricopept 93.2 0.17 3.6E-06 36.3 4.4 32 134-165 2-33 (34)
405 PF14561 TPR_20: Tetratricopep 93.2 0.78 1.7E-05 41.6 9.6 75 82-158 7-83 (90)
406 PF10300 DUF3808: Protein of u 93.1 2.2 4.7E-05 51.6 16.3 182 375-564 178-375 (468)
407 KOG2314 Translation initiation 93.0 0.2 4.4E-06 58.0 6.8 73 1031-1105 58-138 (698)
408 PF00515 TPR_1: Tetratricopept 92.9 0.2 4.3E-06 36.0 4.4 33 499-532 2-34 (34)
409 PF13174 TPR_6: Tetratricopept 92.9 0.17 3.7E-06 35.8 4.1 31 99-131 2-32 (33)
410 KOG1548 Transcription elongati 92.9 0.49 1.1E-05 52.0 9.1 75 1030-1109 264-350 (382)
411 COG2976 Uncharacterized protei 92.9 6.2 0.00013 40.8 16.3 115 372-489 70-190 (207)
412 KOG1308 Hsp70-interacting prot 92.7 0.094 2E-06 57.9 3.5 87 400-488 126-212 (377)
413 KOG3824 Huntingtin interacting 92.6 0.34 7.3E-06 52.5 7.4 63 112-174 129-191 (472)
414 PF13174 TPR_6: Tetratricopept 92.6 0.28 6.1E-06 34.7 4.8 32 135-166 2-33 (33)
415 KOG0376 Serine-threonine phosp 92.5 0.2 4.3E-06 58.0 5.9 89 401-491 17-105 (476)
416 KOG1924 RhoA GTPase effector D 92.4 0.5 1.1E-05 57.0 9.0 6 1032-1037 642-647 (1102)
417 TIGR02246 conserved hypothetic 92.3 1.7 3.6E-05 41.9 11.6 111 723-833 7-123 (128)
418 PF05918 API5: Apoptosis inhib 92.3 0.039 8.6E-07 66.0 0.0 44 356-400 60-103 (556)
419 KOG0120 Splicing factor U2AF, 92.3 0.3 6.5E-06 57.6 7.1 63 1046-1108 424-489 (500)
420 KOG2066 Vacuolar assembly/sort 92.0 40 0.00087 41.9 28.0 76 138-220 361-438 (846)
421 KOG3824 Huntingtin interacting 92.0 0.39 8.4E-06 52.0 6.9 61 400-462 128-188 (472)
422 KOG1365 RNA-binding protein Fu 91.9 0.18 4E-06 55.6 4.4 78 1031-1108 280-359 (508)
423 KOG1308 Hsp70-interacting prot 91.9 0.1 2.2E-06 57.6 2.6 115 111-233 126-243 (377)
424 PF13176 TPR_7: Tetratricopept 91.8 0.27 5.8E-06 36.0 4.0 28 135-162 1-28 (36)
425 KOG0529 Protein geranylgeranyl 91.8 1.9 4.1E-05 49.3 12.3 140 78-218 90-241 (421)
426 PF05918 API5: Apoptosis inhib 91.7 0.051 1.1E-06 65.1 0.0 13 722-734 304-316 (556)
427 COG2976 Uncharacterized protei 91.7 11 0.00024 39.0 16.4 96 427-532 93-192 (207)
428 KOG2471 TPR repeat-containing 91.5 1.2 2.6E-05 51.4 10.5 121 420-541 237-377 (696)
429 PF13474 SnoaL_3: SnoaL-like d 91.3 1.1 2.3E-05 42.8 8.8 111 723-834 2-117 (121)
430 KOG0376 Serine-threonine phosp 91.3 0.3 6.5E-06 56.6 5.6 100 366-467 16-115 (476)
431 PF13181 TPR_8: Tetratricopept 90.9 0.54 1.2E-05 33.6 4.8 31 459-489 2-32 (34)
432 KOG1464 COP9 signalosome, subu 90.8 7 0.00015 42.0 14.5 194 327-529 42-261 (440)
433 KOG0985 Vesicle coat protein c 90.8 59 0.0013 41.6 34.6 129 78-231 998-1130(1666)
434 COG1747 Uncharacterized N-term 90.5 43 0.00094 39.6 22.8 182 347-542 62-248 (711)
435 KOG4676 Splicing factor, argin 90.4 0.43 9.3E-06 53.1 5.5 75 1032-1106 8-84 (479)
436 KOG1456 Heterogeneous nuclear 90.4 2.5 5.4E-05 46.9 11.2 75 1030-1110 286-362 (494)
437 KOG2422 Uncharacterized conser 90.3 10 0.00023 45.1 16.7 146 383-531 279-451 (665)
438 KOG0551 Hsp90 co-chaperone CNS 90.2 10 0.00023 42.2 15.7 95 319-418 88-183 (390)
439 KOG0115 RNA-binding protein p5 90.0 0.41 8.9E-06 50.6 4.7 77 1032-1110 32-113 (275)
440 PF09986 DUF2225: Uncharacteri 89.8 4.3 9.3E-05 43.4 12.5 75 458-533 118-199 (214)
441 PF04053 Coatomer_WDAD: Coatom 89.4 4.4 9.6E-05 48.3 13.4 128 367-529 274-403 (443)
442 PF10345 Cohesin_load: Cohesin 89.2 71 0.0015 40.2 42.1 179 355-537 353-576 (608)
443 KOG4307 RNA binding protein RB 89.0 7.5 0.00016 46.8 14.3 77 1031-1109 311-387 (944)
444 PF14561 TPR_20: Tetratricopep 88.9 3.8 8.2E-05 37.2 9.6 48 119-166 8-55 (90)
445 KOG1996 mRNA splicing factor [ 88.8 1 2.3E-05 48.2 6.7 62 1046-1107 301-363 (378)
446 KOG0112 Large RNA-binding prot 88.6 0.44 9.4E-06 58.6 4.2 74 1030-1110 454-530 (975)
447 PF13176 TPR_7: Tetratricopept 88.5 0.88 1.9E-05 33.3 4.3 29 460-488 1-29 (36)
448 COG3629 DnrI DNA-binding trans 88.4 7 0.00015 43.2 13.1 63 134-197 154-216 (280)
449 KOG1464 COP9 signalosome, subu 88.0 30 0.00065 37.4 16.7 50 113-162 41-94 (440)
450 PF10602 RPN7: 26S proteasome 87.8 5.8 0.00013 41.1 11.6 104 425-530 38-144 (177)
451 COG4976 Predicted methyltransf 87.8 0.62 1.4E-05 48.7 4.2 54 435-489 7-60 (287)
452 PF04053 Coatomer_WDAD: Coatom 87.8 19 0.0004 43.1 17.2 131 357-525 298-428 (443)
453 smart00028 TPR Tetratricopepti 87.4 0.97 2.1E-05 30.7 4.0 32 134-165 2-33 (34)
454 KOG3262 H/ACA small nucleolar 87.2 3.1 6.8E-05 41.7 8.4 21 1046-1066 89-109 (215)
455 KOG2416 Acinus (induces apopto 86.7 2 4.4E-05 50.5 7.9 74 1029-1109 442-520 (718)
456 KOG0985 Vesicle coat protein c 86.0 1.2E+02 0.0025 39.2 45.8 89 114-213 1090-1178(1666)
457 PF11207 DUF2989: Protein of u 85.8 16 0.00034 38.2 13.1 79 436-519 120-198 (203)
458 KOG4318 Bicoid mRNA stability 85.8 1.1E+02 0.0025 38.8 27.2 102 139-242 713-817 (1088)
459 PF10309 DUF2414: Protein of u 85.5 4.1 8.9E-05 33.9 7.0 52 1032-1093 6-61 (62)
460 PF04910 Tcf25: Transcriptiona 85.3 28 0.0006 40.6 16.6 139 351-489 37-224 (360)
461 KOG0551 Hsp90 co-chaperone CNS 85.3 3.4 7.3E-05 45.9 8.3 92 396-488 89-183 (390)
462 COG4976 Predicted methyltransf 84.9 1.3 2.7E-05 46.5 4.7 57 365-421 6-62 (287)
463 KOG2422 Uncharacterized conser 84.8 33 0.00071 41.2 16.4 142 420-567 281-450 (665)
464 COG3947 Response regulator con 84.3 4.6 9.9E-05 44.1 8.6 96 96-193 226-338 (361)
465 KOG0687 26S proteasome regulat 83.7 19 0.00042 40.0 13.1 118 112-234 81-210 (393)
466 KOG0116 RasGAP SH3 binding pro 83.7 1.6 3.4E-05 51.1 5.3 11 1083-1093 301-311 (419)
467 KOG2193 IGF-II mRNA-binding pr 83.2 1.2 2.7E-05 50.0 4.0 71 1032-1109 2-74 (584)
468 PRK10941 hypothetical protein; 83.1 8 0.00017 42.8 10.4 71 363-434 190-260 (269)
469 PRK10941 hypothetical protein; 82.2 14 0.00031 40.9 11.9 69 397-467 190-258 (269)
470 COG5187 RPN7 26S proteasome re 82.1 72 0.0016 35.1 16.3 100 133-234 115-221 (412)
471 PF15023 DUF4523: Protein of u 81.4 5.3 0.00011 38.7 6.9 72 1028-1107 83-158 (166)
472 KOG0112 Large RNA-binding prot 81.3 0.56 1.2E-05 57.7 0.6 77 1027-1105 368-445 (975)
473 PF14534 DUF4440: Domain of un 81.2 5.8 0.00013 36.4 7.5 100 724-828 3-107 (107)
474 KOG0529 Protein geranylgeranyl 81.1 23 0.0005 40.8 13.0 103 76-179 41-156 (421)
475 PRK10590 ATP-dependent RNA hel 81.1 4.4 9.5E-05 49.0 8.2 22 1032-1058 315-336 (456)
476 KOG4507 Uncharacterized conser 80.5 8.3 0.00018 45.8 9.5 92 398-490 617-708 (886)
477 KOG1550 Extracellular protein 80.3 1.2E+02 0.0026 37.6 20.5 214 327-567 308-540 (552)
478 PF08675 RNA_bind: RNA binding 80.0 6.1 0.00013 34.8 6.2 52 1032-1093 10-61 (87)
479 KOG4285 Mitotic phosphoprotein 79.2 6.4 0.00014 42.8 7.5 69 1031-1107 197-266 (350)
480 PF12862 Apc5: Anaphase-promot 78.9 13 0.00027 34.0 8.6 60 469-529 9-71 (94)
481 KOG1550 Extracellular protein 78.8 99 0.0021 38.4 19.1 147 370-529 228-394 (552)
482 smart00028 TPR Tetratricopepti 78.5 3.4 7.3E-05 27.8 3.8 31 500-531 3-33 (34)
483 COG3629 DnrI DNA-binding trans 77.8 8.5 0.00018 42.6 8.2 71 92-162 132-216 (280)
484 KOG4410 5-formyltetrahydrofola 77.7 7.2 0.00016 41.8 7.2 49 1030-1084 329-377 (396)
485 PF09613 HrpB1_HrpK: Bacterial 77.4 43 0.00092 33.8 12.2 87 399-488 21-107 (160)
486 PRK11619 lytic murein transgly 77.3 2.1E+02 0.0046 36.2 39.4 114 68-194 39-155 (644)
487 PF09986 DUF2225: Uncharacteri 76.4 38 0.00083 36.2 12.6 94 368-489 91-196 (214)
488 PF00244 14-3-3: 14-3-3 protei 76.0 40 0.00087 36.7 12.9 53 474-527 142-197 (236)
489 KOG2068 MOT2 transcription fac 76.0 0.96 2.1E-05 50.0 0.4 79 1031-1110 77-162 (327)
490 PF14929 TAF1_subA: TAF RNA Po 75.4 38 0.00082 41.4 13.5 141 72-217 318-467 (547)
491 PF03467 Smg4_UPF3: Smg-4/UPF3 74.9 5 0.00011 41.5 5.2 80 1029-1108 5-95 (176)
492 PF12862 Apc5: Anaphase-promot 74.8 24 0.00052 32.2 9.2 33 459-491 42-74 (94)
493 smart00299 CLH Clathrin heavy 73.2 50 0.0011 32.4 11.9 116 77-216 21-136 (140)
494 KOG0889 Histone acetyltransfer 72.7 5.2E+02 0.011 38.6 26.6 133 354-489 2812-2956(3550)
495 KOG4507 Uncharacterized conser 72.1 35 0.00075 40.9 11.5 116 373-489 198-314 (886)
496 KOG1166 Mitotic checkpoint ser 72.1 51 0.0011 43.0 14.2 109 134-245 35-157 (974)
497 PF14853 Fis1_TPR_C: Fis1 C-te 72.0 17 0.00038 29.3 6.5 46 424-470 2-47 (53)
498 KOG2135 Proteins containing th 71.8 2.6 5.5E-05 48.5 2.4 60 1044-1110 386-445 (526)
499 KOG3293 Small nuclear ribonucl 71.6 6.6 0.00014 36.4 4.5 50 1108-1158 85-134 (134)
500 COG3914 Spy Predicted O-linked 71.5 66 0.0014 38.9 13.7 151 315-474 34-192 (620)
No 1
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=100.00 E-value=2.5e-53 Score=480.75 Aligned_cols=539 Identities=41% Similarity=0.698 Sum_probs=459.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001064 83 EDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG 162 (1167)
Q Consensus 83 ~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~ 162 (1167)
...+|..+..+..++++|+.|+...... ..++.+|.+|+.+|..||.|.+||.+||+++.+.|+.+++.++|+|||..
T Consensus 31 ~~~~we~~~~~~~~f~~wt~li~~~~~~--~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a 108 (577)
T KOG1258|consen 31 SLDYWEILSNDSLDFDAWTTLIQENDSI--EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA 108 (577)
T ss_pred hhhHhhccccchhcccchHHHHhccCch--hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4568899999999999999999987763 56799999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHH
Q 001064 163 VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRY 242 (1167)
Q Consensus 163 ~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~ 242 (1167)
.|.|+++|+.|+.+.....++.+..|.+|++|+..+|.++.|+.||+.||+||..++++.++..+|+|+|++|..++..+
T Consensus 109 ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 109 IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHHhhhC--CCccchhhhccccccCCccccccCCccccCcchHH-HHHHHHHHHH
Q 001064 243 FSSFKEFAASRPLSELRTAEEVDAAAVAVAAA--PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE-ELEKYIAVRE 319 (1167)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~--~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~-~~~~~i~~~~ 319 (1167)
|..|..+.+++++..+...++...++.++-.. ...... ..+....++..+..+... +++.. ...+++..++
T Consensus 189 f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~-----~~e~~~~~v~~~~~~s~~-l~~~~~~l~~~~~~~~ 262 (577)
T KOG1258|consen 189 FDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQE-----PLEELEIGVKDSTDPSKS-LTEEKTILKRIVSIHE 262 (577)
T ss_pred HHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccC-----hhHHHHHHHhhccCccch-hhHHHHHHHHHHHHHH
Confidence 99999999999999999998887766655432 111110 111122333433333322 23333 6678999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 399 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~ 399 (1167)
.+|+...+...+++.||..|+||||||+|+++.++.+|+.|++|.++.|+++++..+|+||+..|.+|.++|++|+.+++
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~ 342 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWME 342 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001064 400 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 479 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~ 479 (1167)
..|+.+-|..++.++++++.++.+.++++++.|.+.+|+++.|+.+|+++..++ |+...+-+.++.++.|+|+.+.+..
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhH
Confidence 999999999999999999999999999999999999999999999999997776 9999999999999999999999985
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHH
Q 001064 480 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLV 559 (1167)
Q Consensus 480 ~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~ 559 (1167)
..+......++++.....+.++.+++++.+...++.+.|+.++.++++..|++..+|..+++|++..+...+.+.+..++
T Consensus 422 ~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~ 501 (577)
T KOG1258|consen 422 KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLLEPID 501 (577)
T ss_pred HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhhhhHH
Confidence 33333334445555566778899999999999999999999999999999999999999999999998777777777777
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhh
Q 001064 560 DKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAK 636 (1167)
Q Consensus 560 eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~ 636 (1167)
...+....+.....+. -.+|++|...+|+.....+...++.+.|..++...+.+....+..-..|+++...
T Consensus 502 ~~~~~~~~~~~~~~~~------~~k~~ef~e~~g~~~~~~~~~~~~l~~~l~q~~~~~~~~~~~~s~~~~d~~~~~~ 572 (577)
T KOG1258|consen 502 WKELKMLIDFDDSRSS------TDKYIEFLEWFGIDHKGAQDERPHLKNFLIQRPDNFKKMDTLESRFTNDPSKEAL 572 (577)
T ss_pred HHHHhhhccccccccc------hHHHHHHHHhccchhHhHhhchHHHHHHHhhccchhcccchHHHHhcCChhhhcc
Confidence 7665543222211222 2239999999999999999999999998766544443434444444555555443
No 2
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=100.00 E-value=3e-53 Score=476.29 Aligned_cols=389 Identities=35% Similarity=0.547 Sum_probs=231.1
Q ss_pred CCCCcchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcc-cchhchHHHHHHHhcCCCcce--eEeeeeccccC
Q 001064 714 PPAYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST-ESASSMLDIHSLVISLNFTAI--EIKTINSLGSW 790 (1167)
Q Consensus 714 ~~~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~-~~~~~~~~i~~~~~~l~~~~~--~i~~~d~q~~~ 790 (1167)
+...|+.||+.||+|||++|++.|+.||+||.++|+++|.+.+.. ..+.+.+.|+++|++|+|..| +|++||+|.|+
T Consensus 9 ~~~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~S~ 88 (419)
T KOG0116|consen 9 PVPTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQASL 88 (419)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhhhc
Confidence 346678999999999999999999999999999999999887765 477889999999999999877 79999999999
Q ss_pred CCceEEEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEeccCCCccCCCCCCCcCCccCCCCCCCCCCCCCCCc
Q 001064 791 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEEPVYQHPAPVLSENKFDVQHDASSPIPEQAGL 870 (1167)
Q Consensus 791 ~~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (1167)
++||+|+|+|.|++++. +.|+|+|||||+||+++|||+||||||+|+++..+. +..+ +. .+.++ ..
T Consensus 89 ~~GvvI~VtG~lt~~~~-~rRkF~QtFfLapq~~~yfVlNDiFRfvde~~~~e~-----~~~~--vp----~~~~~--~~ 154 (419)
T KOG0116|consen 89 EKGVVIMVTGYLTNKDG-PRRKFSQTFFLAPQEKGYFVLNDIFRFVDEEFEPEA-----NTDE--VP----EANPA--VV 154 (419)
T ss_pred cCCeEEEEEEEEEeCCC-cceEEEEEEEEeecCCceEEEechhhhccccccccc-----cccc--CC----CCCcc--ee
Confidence 99999999999999996 799999999999999999999999999998761111 0000 00 00000 00
Q ss_pred CCCCccchhhhhccccccccCCccCCCCCCCCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001064 871 AASDYVLEEEAREYVSSVHIEDDATDNYSLPEQQQ-DEEPESEEVDEEIPAEEIPASFQTDVSPVQPPPAPAVEEPVDEP 949 (1167)
Q Consensus 871 ~~~~~~~~e~~~e~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 949 (1167)
......+ ...+++.+.+.+++.. +..+. ...++.. ..+....++.++.......+. .++. .+..+.
T Consensus 155 -~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~V~~~~~~-~~~~~~~~~~~ee~v~~~~~~-~~p~----~~~~~~ 221 (419)
T KOG0116|consen 155 -VSVEKAS-QLVEAVVESEPEPEPE-----PKAEDEVEVPEEA-TVEDEAKEKTKEELVIQQTVS-EAPA----APQGDA 221 (419)
T ss_pred -ecccccc-cccccccccCCCCccc-----ccccCceeccccc-cccccccccCchhhccccccc-CCCc----cccccc
Confidence 0000000 0000000000000000 00000 0000000 000000000000000000000 0000 013445
Q ss_pred cccchhhhhhhcccCCCCccccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 001064 950 QRKTYASILRVSKSQSTSFVATQPSFTKTASTTSDWNPAPQPTTQQSNYTSSFVPESGVSSHMPESGFEAVDDSLGLDEG 1029 (1167)
Q Consensus 950 ~p~s~A~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1167)
+.++||+++..+....++... ...+.+. .+. .+|...|.+++... ++.+. ....+.+...-....
T Consensus 222 ~~~s~asv~~~~~~~~~~~~~-~~~p~~~-~~~--~~p~~~~~~~~~s~--~~~p~---------~~~~~~n~~~~~~~~ 286 (419)
T KOG0116|consen 222 PKKSFASVVKVLKKSAAVQQS-KGSPPQI-QPQ--QQPSTKPQAERQSK--PPSPV---------RESKSGNSNNQEPRA 286 (419)
T ss_pred cchhhhhhhhhccccccccee-ccCCCcc-ccc--cCCccCcchhhccC--CCCcc---------ccccccccCCcceee
Confidence 688999998776544333111 1000011 000 00111111000000 00000 000000111112223
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
.+.+|||+|||.+++.++|+++|+.||.|+..+|.++.+. ++..+||||+|++.++++.||.++...|+|++|.|++++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~-~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPG-GKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccC-CCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 4566999999999999999999999999999999888743 444599999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001064 1110 PNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRG 1145 (1167)
Q Consensus 1110 ~~~~~~~~g~~~g~grg~~~~~~~rg~~g~~~~gr~ 1145 (1167)
+..++.+..+++.++++|+++++||+++++||++|+
T Consensus 366 ~~~~g~~~~~~~~~~~~g~~~~~gr~~~~~~gg~~~ 401 (419)
T KOG0116|consen 366 PGFRGNGNNRSGRGNRGGGRGPGGRGRGGGRGGGRG 401 (419)
T ss_pred ccccccccCcccccCCCCCCCCCCCCCCCCCCCCcC
Confidence 865543321112223344444455555554444443
No 3
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=100.00 E-value=1.1e-50 Score=446.77 Aligned_cols=480 Identities=21% Similarity=0.352 Sum_probs=411.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 87 WNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 87 ~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
++.|+.||.|.++|+.|++.++. ..++++|..||+++..||..+.+|+.|++.|++.++|+.++++|.|||... .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt---~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-Ln 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQT---QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LN 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHcc---CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hh
Confidence 67799999999999999999986 499999999999999999999999999999999999999999999999987 89
Q ss_pred HHHHHHHHHHHHhhcCCHHH----HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHh
Q 001064 167 VDIWLHYCIFAINTYGDPET----IRRLFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRILE 233 (1167)
Q Consensus 167 ~~lw~~ya~~~~~~~~~~~~----Ar~~feral~~~g~d~~s~~lw~~y~~~e~~---------~~~~~~A~~iy~r~l~ 233 (1167)
+|||.+|+.+..+++++... ..+.|+.++..+|.|+.|..||..|+.|+.. +++++.+|++|+|+|.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 99999999999987776654 4556999999999999999999999999874 4689999999999999
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
.|+.+++.+|++|..|++..+. -..++
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~-----------------------------------------------------~tarK 192 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINI-----------------------------------------------------ITARK 192 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHH-----------------------------------------------------HHHHH
Confidence 9999999999999998654210 01133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCC----hhhHHHHHHHHHHHHHcCC--------hHHHHHHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS----VTELENWHNYLDFIERDGD--------FNKVVKLYERCL 381 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld----~~~~~~W~~y~~~~e~~g~--------~~~a~~~yeral 381 (1167)
++.-+...|+.+....+-+....++++|.-+.|+|.. -.++++|+++|+|+..++- ..|+..+|++||
T Consensus 193 ~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~l 272 (656)
T KOG1914|consen 193 FIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCL 272 (656)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHH
Confidence 5555555666666666666667788888888888765 4578999999999865532 248999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC---HHHHHH
Q 001064 382 IACANYPEYWIRYVLCMEASGS--------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD---IDGARA 444 (1167)
Q Consensus 382 ~~~p~~~~~w~~ya~~l~~~g~--------------~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~---~~~A~~ 444 (1167)
...++++++|+.|+.++...++ .+++.++|++++......+..+++.++++++..-+ .+....
T Consensus 273 l~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~ 352 (656)
T KOG1914|consen 273 LYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHE 352 (656)
T ss_pred HHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHH
Confidence 9999999999999999988877 78999999999998877888899999999987666 777888
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 524 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~k 524 (1167)
+|++++....-+..-+|+.+.++-+|...++.||.+|.+|-+.... .-.+++.-|.+++.+.+|.+-|.+||+-
T Consensus 353 ~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~------~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 353 IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT------RHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC------cchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 8988744334444557999999999999999999999999886532 1357777788888889999999999999
Q ss_pred HHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001064 525 SLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDR 604 (1167)
Q Consensus 525 al~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r 604 (1167)
+|+++++++.+...|++|....++. .++|.+|||++.+ ++++++.++||++|++||+.+||+.++.++++|
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd---~N~R~LFEr~l~s------~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDD---NNARALFERVLTS------VLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcc---hhHHHHHHHHHhc------cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999999999998774 4589999999986 277899999999999999999999999999999
Q ss_pred HHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCCC
Q 001064 605 HARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPS 643 (1167)
Q Consensus 605 ~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~~ 643 (1167)
+..+|+.. .+... .+....+|||+++++|||+..
T Consensus 498 ~~~af~~~---qe~~~--~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 498 RFTAFPAD---QEYEG--NETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred HHHhcchh---hcCCC--ChHHHHHHHHhhcccccccHH
Confidence 99999953 12222 256778999999999999976
No 4
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.3e-48 Score=420.65 Aligned_cols=516 Identities=22% Similarity=0.321 Sum_probs=405.5
Q ss_pred CCcccCCCCCCCccCCCCcccccccCCCCc----------------------hHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001064 51 NATSTENGTSLGIESGAAAGQELVDGSAMS----------------------GEEDRLWNIVKANSSDFSAWTALLEETE 108 (1167)
Q Consensus 51 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~a~~~l~~~l~~nP~d~~aw~~L~~~~~ 108 (1167)
...+|+|+.|+++ ||+++|+|+++..-+ .....|+..|+.|..+...|..+++..+
T Consensus 7 ~~~~vknktpa~v--qItAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEe 84 (677)
T KOG1915|consen 7 KAAKVKNKTPAPV--QITAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEE 84 (677)
T ss_pred chhhccCCCCCcc--eecHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999998 999999999752111 1136789999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHH
Q 001064 109 KLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIR 188 (1167)
Q Consensus 109 ~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar 188 (1167)
. ++++.+||++|+++|..+-.+..+|++||+++++.++++.|+.+++|++...|.-..+|+.|+-++. .+|++..||
T Consensus 85 s--q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE-~LgNi~gaR 161 (677)
T KOG1915|consen 85 S--QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE-MLGNIAGAR 161 (677)
T ss_pred h--HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH-HhcccHHHH
Confidence 7 5899999999999999999999999999999999999999999999999999999999999999887 799999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Q 001064 189 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAA 268 (1167)
Q Consensus 189 ~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~ 268 (1167)
++|+|.+...|. ...|..||+||++.+++++||.||+|.+-..|. -.-|..|..|+..+..-. ..
T Consensus 162 qiferW~~w~P~----eqaW~sfI~fElRykeieraR~IYerfV~~HP~--v~~wikyarFE~k~g~~~---------~a 226 (677)
T KOG1915|consen 162 QIFERWMEWEPD----EQAWLSFIKFELRYKEIERARSIYERFVLVHPK--VSNWIKYARFEEKHGNVA---------LA 226 (677)
T ss_pred HHHHHHHcCCCc----HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc--HHHHHHHHHHHHhcCcHH---------HH
Confidence 999999997775 489999999999999999999999998875433 233445555554433211 11
Q ss_pred HHhhhCCCccchhh-----------------hccccc--cCCccccccCCccccCcchHHHH-HHHHHHHHHHHHHHHHH
Q 001064 269 VAVAAAPSETGAEV-----------------KANEEE--VQPDATEQTSKPVSAGLTEAEEL-EKYIAVREEMYKKAKEF 328 (1167)
Q Consensus 269 ~~~~~~~~e~~~~~-----------------~~~e~~--~~p~~~e~~~~~~~~~~~~~~~~-~~~i~~~~~~y~~~~~~ 328 (1167)
+.+|+...+..++. +..+.. ++.-+++.+++. .++.+ .+|+.. ++.|....-.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~------raeeL~k~~~~f-EKqfGd~~gI 299 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG------RAEELYKKYTAF-EKQFGDKEGI 299 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------cHHHHHHHHHHH-HHHhcchhhh
Confidence 12222222221110 000000 011123333322 12222 233322 3333333333
Q ss_pred HHHHH-----HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---------HHHHHH
Q 001064 329 DSKII-----GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---------EYWIRY 394 (1167)
Q Consensus 329 ~~a~~-----~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~---------~~w~~y 394 (1167)
+++|. .||+.++ .+|-+++.|+.|+.+++..|+.++++.+|+||+...|-.. -+|++|
T Consensus 300 Ed~Iv~KRk~qYE~~v~--------~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVS--------KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred HHHHhhhhhhHHHHHHH--------hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 44333 4888887 6778899999999999999999999999999998877433 389999
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHhhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------
Q 001064 395 VLCMEA-SGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLV--------------------- 449 (1167)
Q Consensus 395 a~~l~~-~g~~e~A~~vl~rA~~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a--------------------- 449 (1167)
+.+.+- ..+.+.++.+|++++++.|++ +..+|+++|.|+.++.++..|++++..+
T Consensus 372 alyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 987753 678999999999999998653 6799999999999998888887765532
Q ss_pred -----------hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH-HHHHHHHHHHHHhCCHHH
Q 001064 450 -----------HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM-LYAQYSRFLHLVSRNAEK 517 (1167)
Q Consensus 450 -----------~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~-l~~~~a~~~~~~~g~~~~ 517 (1167)
+++..|.++.+|.+|+.++..+|+.|+|+.+|+-|+.... .+.|. ||..|++|+.. .|.+++
T Consensus 452 efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~-----ldmpellwkaYIdFEi~-~~E~ek 525 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA-----LDMPELLWKAYIDFEIE-EGEFEK 525 (677)
T ss_pred hHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-----cccHHHHHHHhhhhhhh-cchHHH
Confidence 3678899999999999999999999999999999998762 44565 58999999887 999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhHhhCCC--h-----------hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHH
Q 001064 518 ARQILVDSLDHVQLSKPLLEALIHFESIQSS--P-----------KQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCV 584 (1167)
Q Consensus 518 Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~--~-----------~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~ 584 (1167)
||.+|++.|+..++.+ +|.+|+.||.+... . ..+..+|++|++|.....+.. +++.|..+++.
T Consensus 526 aR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~---~KeeR~~LLEa 601 (677)
T KOG1915|consen 526 ARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST---PKEERLMLLEA 601 (677)
T ss_pred HHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 9999999999999987 99999999996521 1 146789999999987755443 47899999999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001064 585 FLEFLGLFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 585 ~l~fe~~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
|.+||..+|+...++.|..++.+.++.
T Consensus 602 w~~~E~~~G~~~d~~~V~s~mPk~vKK 628 (677)
T KOG1915|consen 602 WKNMEETFGTEGDVERVQSKMPKKVKK 628 (677)
T ss_pred HHHHHHhcCchhhHHHHHHhccHHHHh
Confidence 999999999999999999999888764
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9e-36 Score=323.22 Aligned_cols=427 Identities=18% Similarity=0.218 Sum_probs=342.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 117 KIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 117 ~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
+-|+-|+..|..+-.+...|++|++++..++++.+|+.+|+|||.....++.||+.|+.+++ .+..+..||.+++||+.
T Consensus 57 RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHH
Confidence 45788888999998999999999999999999999999999999999999999999999999 67899999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCC
Q 001064 197 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPS 276 (1167)
Q Consensus 197 ~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~ 276 (1167)
..|. -..+|.+|+.+|...|++.-||.||+|-++..|. ...|.+|..|+... .++ ..++.+|+.+-
T Consensus 136 ~lPR---VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~--eqaW~sfI~fElRy--kei-------eraR~IYerfV 201 (677)
T KOG1915|consen 136 ILPR---VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD--EQAWLSFIKFELRY--KEI-------ERARSIYERFV 201 (677)
T ss_pred hcch---HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHh--hHH-------HHHHHHHHHHh
Confidence 7775 5799999999999999999999999999997444 34556666553321 111 11122333211
Q ss_pred ccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHH
Q 001064 277 ETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN 356 (1167)
Q Consensus 277 e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~ 356 (1167)
- ...+..+|.+|... -.+.+....++.+|++++.- +. -+...-.+
T Consensus 202 ~--------------------------~HP~v~~wikyarF----E~k~g~~~~aR~VyerAie~--~~---~d~~~e~l 246 (677)
T KOG1915|consen 202 L--------------------------VHPKVSNWIKYARF----EEKHGNVALARSVYERAIEF--LG---DDEEAEIL 246 (677)
T ss_pred e--------------------------ecccHHHHHHHHHH----HHhcCcHHHHHHHHHHHHHH--hh---hHHHHHHH
Confidence 1 11234456565433 24566778889999999972 11 11111223
Q ss_pred HHHHHHHHHHcCChHHHH--------------------------------------------HHHHHHHHhcCCCHHHHH
Q 001064 357 WHNYLDFIERDGDFNKVV--------------------------------------------KLYERCLIACANYPEYWI 392 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~--------------------------------------------~~yeral~~~p~~~~~w~ 392 (1167)
...++.|++..+.+++|+ .-|+..+..+|.+.+.|+
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWf 326 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWF 326 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHH
Confidence 444444544443333333 345666666788889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhcc--------ChHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhcCCC----hHH
Q 001064 393 RYVLCMEASGSMDLAHNALARATHVFVKR--------LPEIHLFAARFKEQ-NGDIDGARAAYQLVHTETSPG----LLE 459 (1167)
Q Consensus 393 ~ya~~l~~~g~~e~A~~vl~rA~~~~~p~--------~~~l~~~~a~~~e~-~g~~~~A~~~~~~a~~~~~P~----~~~ 459 (1167)
.|..+.+..|+.+..+.+|+|||...||. .--+|+.|+.+++. ..|.+.++++|+.+ +++.|. ...
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~-l~lIPHkkFtFaK 405 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC-LDLIPHKKFTFAK 405 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HhhcCcccchHHH
Confidence 99999999999999999999999977663 34588888888764 78999999999998 778887 568
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001064 460 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 539 (1167)
Q Consensus 460 ~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~ 539 (1167)
+|+.++.++.|+.++..|+.++-.||-..|. ..++-.|+.++.. +++++..|++|++-|+..|.+...|..|
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElq-L~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQ-LREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHH-HhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 9999999999999999999999999999874 4588899999887 9999999999999999999999999999
Q ss_pred HHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 540 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 540 ~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+.||..+++ .|.+|.+|+-|++... .+..+.+|+.|++||-..|..+..+++++|+.+.-+..
T Consensus 478 aElE~~Lgd---tdRaRaifelAi~qp~-------ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 478 AELETSLGD---TDRARAIFELAISQPA-------LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHHHHHhhh---HHHHHHHHHHHhcCcc-------cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 999999987 6779999999988643 34556799999999999999999999999999886543
No 6
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=100.00 E-value=2.9e-33 Score=302.01 Aligned_cols=460 Identities=17% Similarity=0.242 Sum_probs=359.8
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
+++...+-+|+.-++.||.|+-+|+.|+++++. ++..++.|+.|++++.-||.-..+|..|..-|...+++..++.+|
T Consensus 22 ~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~t--q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf 99 (660)
T COG5107 22 DNIHGDELRLRERIKDNPTNILSYFQLIQYLET--QESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLF 99 (660)
T ss_pred cCCCchHHHHHHHhhcCchhHHHHHHHHHHHhh--hhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHH
Confidence 345555668999999999999999999999997 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcC-----CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHH
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYG-----DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWS 222 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~-----~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~---------~~~~~ 222 (1167)
-|||... .+.+||..|+.+....+. .-..+.+.|+..+..++.++.+..+|..|..|+.. +++++
T Consensus 100 ~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid 178 (660)
T COG5107 100 GRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRID 178 (660)
T ss_pred HHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence 9999976 899999999999985432 22456778999999999999999999999999863 67899
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccc
Q 001064 223 RVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVS 302 (1167)
Q Consensus 223 ~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~ 302 (1167)
.+|.+|+|+|..|..+++.+|++|..|+.+.+- ..+
T Consensus 179 ~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~----------~Ta---------------------------------- 214 (660)
T COG5107 179 KIRNGYMRALQTPMGNLEKLWKDYENFELELNK----------ITA---------------------------------- 214 (660)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHHHHHH----------HHH----------------------------------
Confidence 999999999999999999999999998654210 000
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc-c---CCCChhhHHHHHHHHHHHHHcC-----C--hH
Q 001064 303 AGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFH-V---KPLSVTELENWHNYLDFIERDG-----D--FN 371 (1167)
Q Consensus 303 ~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~-v---~pld~~~~~~W~~y~~~~e~~g-----~--~~ 371 (1167)
++++....-+|+.+...-+.+..+.+.+++--|. . ..........|.++|+|+...+ + ..
T Consensus 215 ---------rKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~q 285 (660)
T COG5107 215 ---------RKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQ 285 (660)
T ss_pred ---------HHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHH
Confidence 0111111111222111111122222222210000 0 0011122356999999987553 1 34
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001064 372 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 451 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 451 (1167)
|+-.+|++++...+..+++|+.|..++...++.+.|+....|++. .+|.+++.++..++...+-++...+|+++..
T Consensus 286 Ri~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~----~spsL~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 286 RIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE----MSPSLTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc----CCCchheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 888999999999999999999999999999999999999988874 5667999999999999998888888886411
Q ss_pred h-----------------cCC------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 452 E-----------------TSP------------GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 452 ~-----------------~~P------------~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
. -+| ...-+|+-+.+.-.|...++.|+.+|-++-+..- ..+++|+
T Consensus 362 ~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~------~~h~vyi 435 (660)
T COG5107 362 DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI------VGHHVYI 435 (660)
T ss_pred HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC------CCcceee
Confidence 0 011 1122477788888888889999999999877641 1245777
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELS 582 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~ 582 (1167)
..|.+++...|+..-|.+||+-+|.++|++..+...|..|.+..++. ..+|.+||.++..- ...+.++||
T Consensus 436 ~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde---~naraLFetsv~r~-------~~~q~k~iy 505 (660)
T COG5107 436 YCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDE---ENARALFETSVERL-------EKTQLKRIY 505 (660)
T ss_pred eHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcH---HHHHHHHHHhHHHH-------HHhhhhHHH
Confidence 77777888899999999999999999999999999999999998874 45899999876542 233557899
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 583 CVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 583 ~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+.|++||.++||+..+-.+++|+.+++|..
T Consensus 506 ~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 999999999999999999999999999864
No 7
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=1.1e-30 Score=293.12 Aligned_cols=511 Identities=17% Similarity=0.187 Sum_probs=352.7
Q ss_pred ccchhhhccC-ccccccCCcCCcccccCCC-------CcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCC
Q 001064 23 ATSENEAMGS-SQAAGYNSMNGNVVNEAGN-------ATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANS 94 (1167)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP 94 (1167)
+.+|+++-|- .-|.++.|++-..+.-++. +..|..-+|..+-.-|+...+-..+|.++.|...+.+-.+..|
T Consensus 237 svtgqtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cp 316 (913)
T KOG0495|consen 237 SVTGQTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECP 316 (913)
T ss_pred cCCCCcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCC
Confidence 3344555554 4555555543333333332 3334555555554444444443333555555555555555555
Q ss_pred CCHHHHHHHHHHHHh--------------------------hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 001064 95 SDFSAWTALLEETEK--------------------------LAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 95 ~d~~aw~~L~~~~~~--------------------------~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~ 148 (1167)
.+.|.|..-+++... + +.+...-.++++++|+..|.+.++|+.-.+++ +
T Consensus 317 rSeDvWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dL-E~~~~~K~RVlRKALe~iP~sv~LWKaAVelE----~ 391 (913)
T KOG0495|consen 317 RSEDVWLEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADL-ESDTKNKKRVLRKALEHIPRSVRLWKAAVELE----E 391 (913)
T ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhh-hhHHHHHHHHHHHHHHhCCchHHHHHHHHhcc----C
Confidence 555555554443221 0 11222233444444444444444444444433 3
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH
Q 001064 149 MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY 228 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy 228 (1167)
.+.|+-++.||++.+|.|.+||+.|++++. ++.|+.++.++-+.+|++ ..||..-+.+|+..|+.+.+.+|.
T Consensus 392 ~~darilL~rAveccp~s~dLwlAlarLet-----YenAkkvLNkaRe~iptd---~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 392 PEDARILLERAVECCPQSMDLWLALARLET-----YENAKKVLNKAREIIPTD---REIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHHHH-----HHHHHHHHHHHHhhCCCC---hhHHHHHHHHHHhcCCHHHHHHHH
Confidence 333555666666666666666666655543 555666666666655553 556666666666666666666666
Q ss_pred HHHHhc-----chhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcccc
Q 001064 229 TRILEN-----PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 229 ~r~l~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
.|.|.. -..+.+.++++......... ..+... + ..++++.- +|
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags---v~TcQA-I--i~avigig------------------vE-------- 511 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGS---VITCQA-I--IRAVIGIG------------------VE-------- 511 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCC---hhhHHH-H--HHHHHhhc------------------cc--------
Confidence 666542 12244555555444422210 011110 0 01111110 00
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
.+..+.-+..-...+.+.+-++-++.+|-.+|+ .+|..-.+|...+.|++..|..+....++++++..
T Consensus 512 ----eed~~~tw~~da~~~~k~~~~~carAVya~alq--------vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 512 ----EEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--------VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred ----cchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--------hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 011111112223455666777778888999988 67777889999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
||..+.+|+.|+.-....|+.-.|+.++..|++.+ |++.+||++...++.++..++.||.+|.++. . ......+|++
T Consensus 580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar-~-~sgTeRv~mK 656 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR-S-ISGTERVWMK 656 (913)
T ss_pred CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh-c-cCCcchhhHH
Confidence 99999999999998888899999999999999988 8899999999999999999999999999983 3 4456789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 543 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e 543 (1167)
++.+++-+++.++|+.+++++|+.+| +.+.+|+.++.++.. .++++.||..|..+++++|++..||..++.+|
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp------~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFP------DFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCC------chHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 99999999999999999999999985 457899999999876 99999999999999999999999999999999
Q ss_pred hhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 544 SIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 544 ~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
...+. +-.+|.+++++.-.+|.+. .+|..-+.+|...|+.+.+..+..|+.+-+|..
T Consensus 730 Ek~~~---~~rAR~ildrarlkNPk~~---------~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 730 EKDGQ---LVRARSILDRARLKNPKNA---------LLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHhcc---hhhHHHHHHHHHhcCCCcc---------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 98875 5679999999999999887 599999999999999999999999999988864
No 8
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=1.7e-29 Score=283.80 Aligned_cols=487 Identities=16% Similarity=0.233 Sum_probs=356.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CCHHHHHHHHH
Q 001064 86 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV--------GSMDKVVEVYE 157 (1167)
Q Consensus 86 l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~--------~~~e~A~~l~e 157 (1167)
|+.-|-.||.+...|..++..... ....+..-+||++|+.+|.++.+|..|.+.-..+ ..++..-.+|+
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~---sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~e 92 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAG---SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFE 92 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHcc---CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHH
Confidence 444466799999999999998775 4678889999999999999999999999543322 23788999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001064 158 RAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 237 (1167)
Q Consensus 158 raL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~ 237 (1167)
|||......+.+|+.|++|++ ..+++...|.+|++||...|...++ +||..|+.|..+.+-.+-+.++|+|.|+..|.
T Consensus 93 r~lv~mHkmpRIwl~Ylq~l~-~Q~~iT~tR~tfdrALraLpvtqH~-rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~ 170 (835)
T KOG2047|consen 93 RCLVFMHKMPRIWLDYLQFLI-KQGLITRTRRTFDRALRALPVTQHD-RIWDLYLKFVESHGLPETSIRVYRRYLKVAPE 170 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHH-hcchHHHHHHHHHHHHHhCchHhhc-cchHHHHHHHHhCCChHHHHHHHHHHHhcCHH
Confidence 999977788999999999999 6799999999999999988865444 89999999999999999999999999999887
Q ss_pred hHHHHHHHHHH----------HHhcCCCcccc-----cHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccc
Q 001064 238 QLDRYFSSFKE----------FAASRPLSELR-----TAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVS 302 (1167)
Q Consensus 238 ~~~~~~~~~~~----------~~~~~~~~~~~-----~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~ 302 (1167)
..+.+..-... +..-.+.+... +..+.-...-++.... ...++.-.+|.+.+.-+
T Consensus 171 ~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~----------p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 171 AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN----------PDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC----------cchhcccCHHHHHHhhc
Confidence 65444321111 10000000000 0000000000000000 01111112333333322
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHc---------------
Q 001064 303 AGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD--------------- 367 (1167)
Q Consensus 303 ~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~--------------- 367 (1167)
.+.+ +.+..++..+.+.|...+.+++|+..|+++|.... .-.+.-.++..|+.|++..
T Consensus 241 ~rft--Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~-----tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ 313 (835)
T KOG2047|consen 241 RRFT--DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM-----TVRDFTQIFDAYAQFEESCVAAKMELADEESGNE 313 (835)
T ss_pred ccCc--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe-----ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccCh
Confidence 2332 34566777778899999999999999999997321 1112223455666665311
Q ss_pred -----------------------------------------------CChHHHHHHHHHHHHh-cCC-----CHHHHHHH
Q 001064 368 -----------------------------------------------GDFNKVVKLYERCLIA-CAN-----YPEYWIRY 394 (1167)
Q Consensus 368 -----------------------------------------------g~~~~a~~~yeral~~-~p~-----~~~~w~~y 394 (1167)
|+..+.+..|..|+.. +|. --.+|..+
T Consensus 314 ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 314 EDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHH
Confidence 2233455556666554 332 22599999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---------------
Q 001064 395 VLCMEASGSMDLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--------------- 456 (1167)
Q Consensus 395 a~~l~~~g~~e~A~~vl~rA~~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--------------- 456 (1167)
|.+++..|+++.|+.+|++|++..=+ +...+|..||.++.++.+++.|+++++++. . .|.
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~-vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-H-VPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-c-CCCchhhhhhcCCCcHHH
Confidence 99999999999999999999885423 346899999999999999999999999872 2 222
Q ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc--C
Q 001064 457 ----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV--Q 530 (1167)
Q Consensus 457 ----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~--p 530 (1167)
++.+|..|+++++..|-++..+.+|++.|.+-- ..|.+.++||.|+.. ..-++++.++|++++.++ |
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri------aTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI------ATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCc
Confidence 346799999999999999999999999999863 348899999999876 778999999999999976 6
Q ss_pred CCHHHHHHHHHhHh-hCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhh
Q 001064 531 LSKPLLEALIHFES-IQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLF 609 (1167)
Q Consensus 531 ~~~~l~~~~~~~e~-~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~ 609 (1167)
+-.++|..|+.--. ..+. ...+.+|.|||+||.. +|++..+.|+..|..||+.+|-.....++++|....+
T Consensus 545 ~v~diW~tYLtkfi~rygg-~klEraRdLFEqaL~~-------Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGG-TKLERARDLFEQALDG-------CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred cHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 66789987765333 3332 3478899999999994 5778899999999999999999999999999976666
Q ss_pred CC
Q 001064 610 LP 611 (1167)
Q Consensus 610 ~~ 611 (1167)
+.
T Consensus 617 ~~ 618 (835)
T KOG2047|consen 617 KE 618 (835)
T ss_pred CH
Confidence 53
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-30 Score=288.45 Aligned_cols=441 Identities=16% Similarity=0.148 Sum_probs=383.4
Q ss_pred cCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHH
Q 001064 41 MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRR 120 (1167)
Q Consensus 41 ~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~ 120 (1167)
--||+.+|.+--..|-..+|.....-..++.++-+..+++.....-..+++.+|.-.+++..|+.++.. .|++..|..
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke--rg~~~~al~ 137 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE--RGQLQDALA 137 (966)
T ss_pred hccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH--hchHHHHHH
Confidence 368888888777788889999988888888888887889998888899999999999999999999876 489999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001064 121 VYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 200 (1167)
Q Consensus 121 ~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~ 200 (1167)
.|+.++++.|.+.++|+.++..+..+|+.+.|..+|..+|+++|+......+...++. ..|++.+|...|.+||...+
T Consensus 138 ~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk-a~Grl~ea~~cYlkAi~~qp- 215 (966)
T KOG4626|consen 138 LYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK-AEGRLEEAKACYLKAIETQP- 215 (966)
T ss_pred HHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH-hhcccchhHHHHHHHHhhCC-
Confidence 9999999999999999999999999999999999999999999999999888888888 68999999999999999555
Q ss_pred CCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccch
Q 001064 201 DYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGA 280 (1167)
Q Consensus 201 d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~ 280 (1167)
.-...|..++-....+|++-.++.-|.++++++|...+.+++....+.....+++.....+- ++...
T Consensus 216 --~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r-----Al~lr------ 282 (966)
T KOG4626|consen 216 --CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR-----ALNLR------ 282 (966)
T ss_pred --ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH-----HHhcC------
Confidence 34678999999999999999999999999999999999999988877443332222211111 00000
Q ss_pred hhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHH
Q 001064 281 EVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY 360 (1167)
Q Consensus 281 ~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y 360 (1167)
| .... ...-..-+|.+.+..+-||..|+++|. ++|...+.+.++
T Consensus 283 ----------p--------------n~A~----a~gNla~iYyeqG~ldlAI~~Ykral~--------~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 283 ----------P--------------NHAV----AHGNLACIYYEQGLLDLAIDTYKRALE--------LQPNFPDAYNNL 326 (966)
T ss_pred ----------C--------------cchh----hccceEEEEeccccHHHHHHHHHHHHh--------cCCCchHHHhHH
Confidence 0 0000 011113367888999999999999998 788888999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHH
Q 001064 361 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 440 (1167)
Q Consensus 361 ~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~ 440 (1167)
+..+...|+..++...|.+||..||++++....++.++...|.+++|..+|.++++++ |.+...+..+|.++.++|+++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHH
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHH
Q 001064 441 GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ 520 (1167)
Q Consensus 441 ~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~ 520 (1167)
+|+..|+.+ +++.|...+++..+++.+..+|+.+.|+.+|.+||...| +..+.+.+++.+ ++..|++.+|+.
T Consensus 406 ~Ai~~Ykea-lrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP------t~AeAhsNLasi-~kDsGni~~AI~ 477 (966)
T KOG4626|consen 406 DAIMCYKEA-LRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP------TFAEAHSNLASI-YKDSGNIPEAIQ 477 (966)
T ss_pred HHHHHHHHH-HhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc------HHHHHHhhHHHH-hhccCCcHHHHH
Confidence 999999998 899999999999999999999999999999999999984 557788889888 455999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhH
Q 001064 521 ILVDSLDHVQLSKPLLEALIHFE 543 (1167)
Q Consensus 521 i~~kal~~~p~~~~l~~~~~~~e 543 (1167)
-|+.||++.|+.+..+-+++.-.
T Consensus 478 sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 478 SYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHccCCCCchhhhHHHHHH
Confidence 99999999999987766555433
No 10
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.98 E-value=1.7e-28 Score=275.65 Aligned_cols=479 Identities=16% Similarity=0.193 Sum_probs=378.1
Q ss_pred ccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH
Q 001064 54 STENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY 133 (1167)
Q Consensus 54 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~ 133 (1167)
++.+..|.++-+-+-+.-+- .+......-++++|+..|.+.-.|..-..+.. -+.||.++.++++.-|.+.
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~------~~darilL~rAveccp~s~ 410 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLE---SDTKNKKRVLRKALEHIPRSVRLWKAAVELEE------PEDARILLERAVECCPQSM 410 (913)
T ss_pred HHHHhCCCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCCchHHHHHHHHhccC------hHHHHHHHHHHHHhccchH
Confidence 34455566653322222222 23445566788999999999999987666543 2349999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcC--------------
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVG-------------- 199 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g-------------- 199 (1167)
++|+.|++++ .|+.|++++.++-+..|.+..+|+.-+.++. .+|+.+.+..+..|+|....
T Consensus 411 dLwlAlarLe----tYenAkkvLNkaRe~iptd~~IWitaa~LEE-~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 411 DLWLALARLE----TYENAKKVLNKAREIIPTDREIWITAAKLEE-ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 9999999988 7889999999999999999999999999988 78999998888888873211
Q ss_pred ------------------------CCCC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCC
Q 001064 200 ------------------------TDYL-SFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRP 254 (1167)
Q Consensus 200 ------------------------~d~~-s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~ 254 (1167)
.+-. ...-|..-.......+.++-||.||..+|+..+.. ..+|.....|+.++.
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k-~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCK-KSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccch-hHHHHHHHHHHHhcC
Confidence 1100 12345555555555677888999999999975543 456666666665542
Q ss_pred CcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 255 LSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIG 334 (1167)
Q Consensus 255 ~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~ 334 (1167)
+.|....+....... - ..++. ++.+....+-.+++.-.++..
T Consensus 565 -----t~Esl~Allqkav~~----------------------~--------pkae~---lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 565 -----TRESLEALLQKAVEQ----------------------C--------PKAEI---LWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred -----cHHHHHHHHHHHHHh----------------------C--------Ccchh---HHHHHHHHHHhcCCcHHHHHH
Confidence 122221111110110 0 11222 222233345566888888888
Q ss_pred HHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 335 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 335 ~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
+..++. .+|++.++|+.-+.++..+..+++|+.+|.++... .-.+.+|++++.++..++..++|+.+++++
T Consensus 607 l~~af~--------~~pnseeiwlaavKle~en~e~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~ 677 (913)
T KOG0495|consen 607 LDQAFE--------ANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEA 677 (913)
T ss_pred HHHHHH--------hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHH
Confidence 888887 67888999999999999999999999999999987 455789999999999999999999999999
Q ss_pred HHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc
Q 001064 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 494 (1167)
Q Consensus 415 ~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~ 494 (1167)
++.+ |++..+|++++.++++.++++.|+..|..- ++..|+.+.+|+.++.++++.|++-+|+.+|+++.-.+|.+
T Consensus 678 lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G-~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~--- 752 (913)
T KOG0495|consen 678 LKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQG-TKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN--- 752 (913)
T ss_pred HHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhc-cccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc---
Confidence 9999 899999999999999999999999999997 78899999999999999999999999999999999888654
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCC--------------h-----------
Q 001064 495 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS--------------P----------- 549 (1167)
Q Consensus 495 ~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~--------------~----------- 549 (1167)
..+|+...+++.+ .|+.+.|..+..+||+.+|.+..||-.-+.|+-..+. +
T Consensus 753 ---~~lwle~Ir~ElR-~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 753 ---ALLWLESIRMELR-AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred ---chhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 6699999999998 9999999999999999999999999888887755321 1
Q ss_pred --hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 550 --KQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 550 --~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
..++.+|..|+|++...+++. ++|-.|..|+..||+.+.-++|+++....-|.+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~G---------D~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNG---------DAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccc---------hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 235778888999999999887 589999999999999999999999999988765
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=9.5e-27 Score=304.80 Aligned_cols=514 Identities=11% Similarity=0.006 Sum_probs=333.1
Q ss_pred cccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhh
Q 001064 34 QAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQD 113 (1167)
Q Consensus 34 ~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~ 113 (1167)
.++..+...|+.++|++.+.++....|.........+..+...++++.++..|+++++.+|.+...+..++..+.+. +
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~ 445 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS--G 445 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc--C
Confidence 46666777788888887777777766665544555555555557777777777777777777777766666666553 5
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 193 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fer 193 (1167)
++++|+.++++++..+|.+...|..++.++...|++++|+++|++++...|.+...|..++..+. ..|++++|+..|++
T Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI-QEGNPDDAIQRFEK 524 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777777777777777777766666 56677777777777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhh
Q 001064 194 GLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAA 273 (1167)
Q Consensus 194 al~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~ 273 (1167)
++...+. ...+|..++.+....+++++|+.+|++++...+.+...++.....+.....+ +++......+..
T Consensus 525 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~ 595 (899)
T TIGR02917 525 VLTIDPK---NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL------KKALAILNEAAD 595 (899)
T ss_pred HHHhCcC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCH------HHHHHHHHHHHH
Confidence 7764433 3556666666666666677777777776666554444443333222221111 111111111111
Q ss_pred CCC-----------------ccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 274 APS-----------------ETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 336 (1167)
Q Consensus 274 ~~~-----------------e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e 336 (1167)
... +....+...+.. ++. ...+.. .+.....+|...+++++|+..|+
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----~~~-------~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL-----LAL-------QPDSAL----ALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHh-------CCCChH----HHHHHHHHHHHcCCHHHHHHHHH
Confidence 100 000000000000 000 000001 11223345566667777777777
Q ss_pred hhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 337 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416 (1167)
Q Consensus 337 ~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~ 416 (1167)
++++ .+|.+...|..++..+...|+++.++.+++++....|.....|..++.++...|++++|...|++++.
T Consensus 660 ~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 660 RALE--------LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHh--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7766 55555667777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 417 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 417 ~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
.. |+. ..+..++.++...|++++|...++++ ++..|++..++...+.++...|++++|..+|+++++..|+
T Consensus 732 ~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------ 802 (899)
T TIGR02917 732 RA-PSS-QNAIKLHRALLASGNTAEAVKTLEAW-LKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------ 802 (899)
T ss_pred hC-CCc-hHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------
Confidence 65 333 56666777777777777777777776 5667888888888888888888888888888888877653
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHH
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAA 576 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~ 576 (1167)
.+.++..++.++.. .|+ .+|+.+++++++..|++..++..++.+....+. .+.+..+|++++...+.++
T Consensus 803 ~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~~~------ 871 (899)
T TIGR02917 803 NAVVLNNLAWLYLE-LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE---ADRALPLLRKAVNIAPEAA------ 871 (899)
T ss_pred CHHHHHHHHHHHHh-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCh------
Confidence 25566777776555 777 778888888888888888888777777766665 5667788888888776544
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001064 577 EREELSCVFLEFLGLFGDAQLIKKAEDRHA 606 (1167)
Q Consensus 577 ~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~ 606 (1167)
+++..+...+...|+.+.+.++++++.
T Consensus 872 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 872 ---AIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 477778888888888888888887764
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.2e-26 Score=303.87 Aligned_cols=520 Identities=12% Similarity=0.033 Sum_probs=405.0
Q ss_pred ccccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhh
Q 001064 33 SQAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQ 112 (1167)
Q Consensus 33 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~ 112 (1167)
.+++..+...|+.++|+..+..+....+.........+..+...|++++++..|+++++.+|.+...|+.++..+...
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 410 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ-- 410 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC--
Confidence 457778889999999999888888777776655555666666669999999999999999999999999999998874
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 192 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fe 192 (1167)
++.++|++.|++++...|.....+..++..+.+.|++++|+.++++++...|.+..+|..++..+. ..|++++|+..|+
T Consensus 411 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~ 489 (899)
T TIGR02917 411 GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYL-GKGDLAKAREAFE 489 (899)
T ss_pred CChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-hCCCHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhh
Q 001064 193 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVA 272 (1167)
Q Consensus 193 ral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~ 272 (1167)
+++...+. ....|..++......++++.|..+|++++...+.+...+......+...... +++........
T Consensus 490 ~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~ 560 (899)
T TIGR02917 490 KALSIEPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE------EEAVAWLEKAA 560 (899)
T ss_pred HHHhhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHH
Confidence 99985544 5678888999999999999999999999998776665555444333222211 22211111111
Q ss_pred hC-----------------CCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 273 AA-----------------PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 335 (1167)
Q Consensus 273 ~~-----------------~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~ 335 (1167)
.. ..+.......... .++ ....+. .++.....+|...+++++|+..|
T Consensus 561 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----~~~-------~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNE-----AAD-------AAPDSP----EAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred HhCccchhHHHHHHHHHHHCCCHHHHHHHHHH-----HHH-------cCCCCH----HHHHHHHHHHHHcCCHHHHHHHH
Confidence 11 0111000000000 000 000111 12233355677778888888888
Q ss_pred HhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 336 ETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 415 (1167)
Q Consensus 336 e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~ 415 (1167)
+++++ .++.+...|..++..+...|++++|+.+|++++..+|.+.+.|..++.++...|++++|..+++++.
T Consensus 625 ~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 625 KKLLA--------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHH--------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88887 5566677788888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccC
Q 001064 416 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 495 (1167)
Q Consensus 416 ~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~ 495 (1167)
... |..+.++...+.++...|++++|...|+++ +...|++ ..+..++.++.+.|++++|...+++++...|+
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~----- 768 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA-LKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN----- 768 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH-HhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----
Confidence 776 677788888888888888888888888887 6667776 67777888888888999999999888887753
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCH
Q 001064 496 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANA 575 (1167)
Q Consensus 496 ~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~ 575 (1167)
.+.++..++.++.. .|++++|..+|+++++..|++...+..++.+....+. ..+...+++++...++++
T Consensus 769 -~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~~~~~~~~~~----- 837 (899)
T TIGR02917 769 -DAVLRTALAELYLA-QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEKALKLAPNIP----- 837 (899)
T ss_pred -CHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHhhCCCCc-----
Confidence 25677778877665 8999999999999999999998888887777776665 237778888888777665
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001064 576 AEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 576 ~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
.++..+...+...|+.+.+.+++++..+..+.
T Consensus 838 ----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 838 ----AILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777788888889999999999999988775
No 13
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.97 E-value=1.8e-26 Score=259.51 Aligned_cols=501 Identities=17% Similarity=0.232 Sum_probs=333.0
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 001064 81 GEEDRLWNIVKANSSDFSAWTALLEETEKL------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE 154 (1167)
Q Consensus 81 ~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~------~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~ 154 (1167)
+-.-.|+++++.-|.++..|+.+++.-... ...-+...-.+|+++|-.--.++.+|+.|..+.++++++.+.+.
T Consensus 44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~ 123 (835)
T KOG2047|consen 44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRR 123 (835)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHH
Confidence 345678999999999999999999554431 12445677889999999888899999999999999999999999
Q ss_pred HHHHHHhccC--CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC--------------------------------
Q 001064 155 VYERAVQGVT--YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT-------------------------------- 200 (1167)
Q Consensus 155 l~eraL~~~P--~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~-------------------------------- 200 (1167)
+|+|+|...| -+.++|-.|++|+. ..+-++-+.++|+|-|+..|.
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~-~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~ 202 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVE-SHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV 202 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHH-hCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh
Confidence 9999999887 46799999999998 566666777777766521110
Q ss_pred --------------------CC---------------------CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--chh
Q 001064 201 --------------------DY---------------------LSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN--PIQ 237 (1167)
Q Consensus 201 --------------------d~---------------------~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~--p~~ 237 (1167)
++ .-..||..++++..+.|.+++|+.+|+.++.. --.
T Consensus 203 sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr 282 (835)
T KOG2047|consen 203 SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR 282 (835)
T ss_pred hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh
Confidence 00 01456777788888889999999999999986 445
Q ss_pred hHHHHHHHHHHHHhcCCCcccccH---------HHHHHHHHHhhhCCCccchh-hhccccccCCccc-------------
Q 001064 238 QLDRYFSSFKEFAASRPLSELRTA---------EEVDAAAVAVAAAPSETGAE-VKANEEEVQPDAT------------- 294 (1167)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~---------ee~~~~~~~~~~~~~e~~~~-~~~~e~~~~p~~~------------- 294 (1167)
++..+|+.|..|+.+..-..+..+ +.-..++.+-++.+.+.... .+...-.-.|.-+
T Consensus 283 DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~ 362 (835)
T KOG2047|consen 283 DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGN 362 (835)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCC
Confidence 788888888887653211111100 00000000001110000000 0000000000000
Q ss_pred --cc---------cCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHH
Q 001064 295 --EQ---------TSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 363 (1167)
Q Consensus 295 --e~---------~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~ 363 (1167)
+. ...|..+ ......+.....+.|...++.+.|+..|+++++.||-.|.- -..+|..+++.
T Consensus 363 ~~~~i~tyteAv~~vdP~ka----~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d----La~vw~~waem 434 (835)
T KOG2047|consen 363 AAEQINTYTEAVKTVDPKKA----VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED----LAEVWCAWAEM 434 (835)
T ss_pred hHHHHHHHHHHHHccCcccC----CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH----HHHHHHHHHHH
Confidence 00 0000000 00112233444667788888888888888888866644321 13577788877
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChH
Q 001064 364 IERDGDFNKVVKLYERCLIACANY-------------------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 424 (1167)
Q Consensus 364 ~e~~g~~~~a~~~yeral~~~p~~-------------------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~ 424 (1167)
+.+..+++.|+.+.++|+.. |.. ..+|..|+++++..|-++..+.+|+|.+.+- =--|.
T Consensus 435 Elrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr-iaTPq 512 (835)
T KOG2047|consen 435 ELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR-IATPQ 512 (835)
T ss_pred HHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCHH
Confidence 77777788888888877765 333 2378888888888888888888888887754 34677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhc--CCChHHHHHHHHH-HHHHcC--CHHHHHHHHHHHHHhhhCCCccCchHH
Q 001064 425 IHLFAARFKEQNGDIDGARAAYQLVHTET--SPGLLEAIIKHAN-MERRLG--NLEDAFSLYEQAIAIEKGKEHSQTLPM 499 (1167)
Q Consensus 425 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~--~P~~~~~~~~~a~-~e~r~g--~~e~A~~~~~kAl~~~~~~~~~~~~~~ 499 (1167)
+-+.||.|++.+.-++++.++|++. +.+ .|+..++|..|.. |-.|.| ++++|+.+|++||+..|+. ..-.
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErg-I~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~----~aKt 587 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERG-ISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE----HAKT 587 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcC-CccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH----HHHH
Confidence 7778888888888888888888875 333 5778888877765 333444 5788999999999877632 1235
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH------------------------------------HhhcCCCH--HHHHHHHH
Q 001064 500 LYAQYSRFLHLVSRNAEKARQILVDS------------------------------------LDHVQLSK--PLLEALIH 541 (1167)
Q Consensus 500 l~~~~a~~~~~~~g~~~~Ar~i~~ka------------------------------------l~~~p~~~--~l~~~~~~ 541 (1167)
+|+.|+.|+.+ .|-...|.+||++| ++.-|++. .+-..|+.
T Consensus 588 iyLlYA~lEEe-~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAd 666 (835)
T KOG2047|consen 588 IYLLYAKLEEE-HGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFAD 666 (835)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 78888888776 57666666655554 44444443 44447888
Q ss_pred hHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 542 FESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 542 ~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
||.++|. ++++|.+|..+-+. ++|..-.++|+.|.+||-.|||.++++.|++-.+.+
T Consensus 667 lEtklGE---idRARaIya~~sq~-------~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRsv 723 (835)
T KOG2047|consen 667 LETKLGE---IDRARAIYAHGSQI-------CDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSV 723 (835)
T ss_pred Hhhhhhh---HHHHHHHHHhhhhc-------CCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888776 78899998876443 344455689999999999999999999998655444
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=4.8e-28 Score=270.23 Aligned_cols=432 Identities=14% Similarity=0.104 Sum_probs=299.4
Q ss_pred cccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q 001064 71 QELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMD 150 (1167)
Q Consensus 71 ~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e 150 (1167)
+++. .|++.++++...-+-..||.+-+....+.....+. .+.++...--..+++..|...+.+-.+++++...|+++
T Consensus 57 ~~yq-~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~--~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 57 RLYQ-GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG--SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHh-ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcc--cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHH
Confidence 3444 49999999999999999999999888777777653 56777777777889999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001064 151 KVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 230 (1167)
Q Consensus 151 ~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r 230 (1167)
.|..+|+.++++.|..+|.|+..+..+. +.|+.+.|...|..+|+..|. -.........+.+..|++.+|...|.+
T Consensus 134 ~al~~y~~aiel~p~fida~inla~al~-~~~~~~~a~~~~~~alqlnP~---l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 134 DALALYRAAIELKPKFIDAYINLAAALV-TQGDLELAVQCFFEALQLNPD---LYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHHHhcCchhhHHHhhHHHHHH-hcCCCcccHHHHHHHHhcCcc---hhhhhcchhHHHHhhcccchhHHHHHH
Confidence 9999999999999999999999999999 789999999999999996554 345566778888899999999999999
Q ss_pred HHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHH
Q 001064 231 ILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 310 (1167)
Q Consensus 231 ~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~ 310 (1167)
+++..+. +...|..
T Consensus 210 Ai~~qp~-fAiawsn----------------------------------------------------------------- 223 (966)
T KOG4626|consen 210 AIETQPC-FAIAWSN----------------------------------------------------------------- 223 (966)
T ss_pred HHhhCCc-eeeeehh-----------------------------------------------------------------
Confidence 9998663 1122211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH
Q 001064 311 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY 390 (1167)
Q Consensus 311 ~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~ 390 (1167)
++-+|+.+++...+|..|+++++ +||..++.+.+++..+...+.+++|+..|+||+...|++..+
T Consensus 224 -------Lg~~f~~~Gei~~aiq~y~eAvk--------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a 288 (966)
T KOG4626|consen 224 -------LGCVFNAQGEIWLAIQHYEEAVK--------LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA 288 (966)
T ss_pred -------cchHHhhcchHHHHHHHHHHhhc--------CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh
Confidence 12234445555556666666666 666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
+-.++.++..+|.+|.|+..|+||+++. |+++..+..+|..+...|+.++|...|.++ +.+.|++++....++++...
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka-L~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA-LRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH-HHhCCccHHHHHHHHHHHHH
Confidence 6666666666666666666666666655 666666666666666666666666666666 56666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChh
Q 001064 471 LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK 550 (1167)
Q Consensus 471 ~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~ 550 (1167)
+|+++.|..+|++|++.+|. ......+++-++ +..|++++|...|+.||.+.|.-.+-+.++..-...+++
T Consensus 367 ~~~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~-kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~-- 437 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPE------FAAAHNNLASIY-KQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD-- 437 (966)
T ss_pred hccchHHHHHHHHHHhhChh------hhhhhhhHHHHH-HhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh--
Confidence 66666666666666666642 233445555553 336666666666666666666555555444443333333
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001064 551 QIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 551 ~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
++.+.++|+|++..+|.-. +.........++-|++..+...++-..++-|+
T Consensus 438 -v~~A~q~y~rAI~~nPt~A---------eAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 438 -VSAAIQCYTRAIQINPTFA---------EAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred -HHHHHHHHHHHHhcCcHHH---------HHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 4556666666666554322 33444444445555555555555555555444
No 15
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.2e-29 Score=220.70 Aligned_cols=116 Identities=33% Similarity=0.554 Sum_probs=107.2
Q ss_pred CcchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcce--eEeeeeccccCCCce
Q 001064 717 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAI--EIKTINSLGSWNGGV 794 (1167)
Q Consensus 717 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~--~i~~~d~q~~~~~~i 794 (1167)
.+..||..||++||.+|+.+|..|..||.+. ||++|+|..++|+.. |.+|+.||||++| .|+++||||+++|||
T Consensus 5 ~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~-S~LTfEGqq~qG~~~---IveKl~sLpFqkiqh~IttvD~QPt~~g~i 80 (126)
T KOG2104|consen 5 VYEAVAKAFVQHYYSLFDNDRSQLGALYIDT-SMLTFEGQQIQGKDA---IVEKLTSLPFQKIQHSITTVDSQPTPDGGI 80 (126)
T ss_pred cHHHHHHHHHHHHHHHhcCchhHhhhhhccc-ceeeEcchhhcchHH---HHHHHhcCChhhhhceeeecccccCCCCcE
Confidence 3478999999999999999999999999997 799999999998865 5889999999987 599999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeee-CCeEEEEcceEEecc
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQ-EKGYFVLNDIFHFLD 837 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~-~~~y~v~nd~fr~~~ 837 (1167)
||+|+|+++.+++ ++.+|+|+|+|.+. .++|||.|||||+--
T Consensus 81 lv~V~G~Lk~dEd-~~~~FsQvF~L~~n~~~~~~v~ndiFRLn~ 123 (126)
T KOG2104|consen 81 LVMVVGQLKLDED-PILRFSQVFLLKPNIQGSYYVFNDIFRLNL 123 (126)
T ss_pred EEEEeeeeeeccC-CccceeeEEEEeEcCCCCEEEEeeeEEEec
Confidence 9999999999975 99999999999988 489999999999853
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=6.4e-25 Score=291.33 Aligned_cols=514 Identities=10% Similarity=0.010 Sum_probs=354.1
Q ss_pred ccccCCcCCcccccCCCCcccCCCCCCCccCCCC-cccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhh
Q 001064 35 AAGYNSMNGNVVNEAGNATSTENGTSLGIESGAA-AGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQD 113 (1167)
Q Consensus 35 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~ 113 (1167)
+|.++...|+.++|+..|.++....|......+. ...+....+++++++..|+++++.+|.+..+++.|+.++.. .+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~--~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFS--SG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc--cC
Confidence 4557778999999999999998887766421110 01111123789999999999999999999999999999976 47
Q ss_pred hHHHHHHHHHHHHHhC----------------------------------CCCHHHH--------------------HHH
Q 001064 114 NIVKIRRVYDAFLAEF----------------------------------PLCYGYW--------------------KKY 139 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~----------------------------------P~~~~~W--------------------~~~ 139 (1167)
+.++|+..|++++... |....+- ...
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 8888888888775543 3222110 012
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHH----------
Q 001064 140 ADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWD---------- 209 (1167)
Q Consensus 140 a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~---------- 209 (1167)
+..+...|++++|+..|+++|+..|.+.++|..++..+. ..|++++|+..|+++++..+.+... .-|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~-~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNR-DKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccch-hHHHHHHHhhhHHH
Confidence 445667899999999999999999999999999999988 7899999999999999977654322 1222
Q ss_pred --HHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhcccc
Q 001064 210 --KYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEE 287 (1167)
Q Consensus 210 --~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~ 287 (1167)
..+......++++.|+..|++++.+.+.+...++.....+..... .+++......+...
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~------~~eA~~~y~~aL~~------------- 414 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD------YAAAERYYQQALRM------------- 414 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHh-------------
Confidence 123345567899999999999999988877776665554433322 22222111111110
Q ss_pred ccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCC-CChhhHHHHHHHHHHHHH
Q 001064 288 EVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP-LSVTELENWHNYLDFIER 366 (1167)
Q Consensus 288 ~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~p-ld~~~~~~W~~y~~~~e~ 366 (1167)
.| .....+ ..+..+|. .+..++|+..++.......-.+.. ...-....|...+..+..
T Consensus 415 --~p--------------~~~~a~----~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 415 --DP--------------GNTNAV----RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred --CC--------------CCHHHH----HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 00 011111 11223453 346677777666543210000000 000113456667788888
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
.|++++|+.+|++++...|+++.+++.++.++...|++++|+.+|+++++.. |+++..++.++.++...++.++|+..+
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877 788999998888888888888888777
Q ss_pred HHHh---------------------------------------hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001064 447 QLVH---------------------------------------TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 487 (1167)
Q Consensus 447 ~~a~---------------------------------------~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~ 487 (1167)
+++. ++..|++..+++.++.++.++|++++|+.+|+++++.
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6531 1235666667777777777777777777777777777
Q ss_pred hhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 488 EKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 488 ~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
.|++ +.++..++.++.. .|++++|+++|+++++..|++..++..++......++ .+.+..+|++++...+
T Consensus 633 ~P~~------~~a~~~la~~~~~-~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~---~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 633 EPGN------ADARLGLIEVDIA-QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGD---TAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CCCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC---HHHHHHHHHHHhhhCc
Confidence 6532 5567777777655 7777777777777777777777776666665555554 4556777777776544
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001064 568 DSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHA 606 (1167)
Q Consensus 568 ~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~ 606 (1167)
+.+. ......++.....+....|+.+.+...+++..
T Consensus 703 ~~~~---~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 703 SQPP---SMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cCCc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3321 01123355555666777777777777776664
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.4e-24 Score=288.06 Aligned_cols=517 Identities=10% Similarity=-0.012 Sum_probs=364.3
Q ss_pred ccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHH--------------
Q 001064 35 AAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAW-------------- 100 (1167)
Q Consensus 35 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw-------------- 100 (1167)
.+.+....++.+.|...+.++...+|+.+........++...|++++|...++++++.+|.+.++|
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchh
Confidence 456777899999999999999999999887777777777777999999999999999999998876
Q ss_pred --HHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001064 101 --TALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKY-ADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 177 (1167)
Q Consensus 101 --~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~-a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~ 177 (1167)
..+++.+.. .+++++|.++|++++...|.+..+=..| ..+....++.++|++.|+++++.+|.+..+++.++.++
T Consensus 114 ~~l~~A~ll~~--~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLAT--TGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHh--CCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344455554 4799999999999999998886532222 22233458999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHH-----------------------------------------------
Q 001064 178 INTYGDPETIRRLFERGLAYVGTDYLSFPLWDK----------------------------------------------- 210 (1167)
Q Consensus 178 ~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~----------------------------------------------- 210 (1167)
. ..++.++|+..|++++.....+.....+|..
T Consensus 192 ~-~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 192 F-SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred H-ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 8 6899999999999886532111001111110
Q ss_pred ----HHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccc
Q 001064 211 ----YIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANE 286 (1167)
Q Consensus 211 ----y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e 286 (1167)
.+......++++.|+..|+++|+..|.+.+.++.....+..... .+++....+......
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~------~~eA~~~l~~Al~~~----------- 333 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD------RARAVAQFEKALALD----------- 333 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhC-----------
Confidence 12223345789999999999999888877777766655544322 223222111111110
Q ss_pred cccCCccccccCCccccCcchHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHH
Q 001064 287 EEVQPDATEQTSKPVSAGLTEAEELEK--------YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWH 358 (1167)
Q Consensus 287 ~~~~p~~~e~~~~~~~~~~~~~~~~~~--------~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~ 358 (1167)
|+ . .....|.. ....+..++...+++++|+..|++++. ++|.+...|.
T Consensus 334 ----p~-------~-----~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~--------~~P~~~~a~~ 389 (1157)
T PRK11447 334 ----PH-------S-----SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ--------VDNTDSYAVL 389 (1157)
T ss_pred ----CC-------c-----cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCCHHHHH
Confidence 00 0 00011111 111234567788999999999999998 7788888999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH----------------------------------------
Q 001064 359 NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM---------------------------------------- 398 (1167)
Q Consensus 359 ~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l---------------------------------------- 398 (1167)
.++..+...|++++|+..|++++...|.+..+|..++.++
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999988776655433
Q ss_pred --HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001064 399 --EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 476 (1167)
Q Consensus 399 --~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 476 (1167)
...|++++|+.+|++++++. |+++.+++.++.++.+.|++++|+.+|+++ +++.|++...++.++.++...++.++
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a-l~~~P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRL-AQQKPNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence 34688888999999999887 788888889999999999999999999997 67789888888888877777788888
Q ss_pred HHHHHHHHHHhhhCCC----------------------------------ccCchHHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 477 AFSLYEQAIAIEKGKE----------------------------------HSQTLPMLYAQYSRFLHLVSRNAEKARQIL 522 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~----------------------------------~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~ 522 (1167)
|+.+|+++........ ..+..+.++..++.++.. .|++++|+.+|
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~-~g~~~~A~~~y 626 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQ-RGDYAAARAAY 626 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHH-cCCHHHHHHHH
Confidence 8777765321110000 011223455566666554 67777777777
Q ss_pred HHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q 001064 523 VDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAE 602 (1167)
Q Consensus 523 ~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~ 602 (1167)
+++++..|++...+..++.+....++ .+.+..+|++++...+++. .++..........|+.+.+.+++
T Consensus 627 ~~al~~~P~~~~a~~~la~~~~~~g~---~~eA~~~l~~ll~~~p~~~---------~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 627 QRVLTREPGNADARLGLIEVDIAQGD---LAAARAQLAKLPATANDSL---------NTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhccCCCCh---------HHHHHHHHHHHhCCCHHHHHHHH
Confidence 77777777777777766666666554 4456666776666554443 23444444445566766666666
Q ss_pred HHHHhhhC
Q 001064 603 DRHARLFL 610 (1167)
Q Consensus 603 ~r~~~~~~ 610 (1167)
+++.+..+
T Consensus 695 ~~al~~~~ 702 (1157)
T PRK11447 695 NRLIPQAK 702 (1157)
T ss_pred HHHhhhCc
Confidence 66665554
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=7.9e-24 Score=264.29 Aligned_cols=413 Identities=12% Similarity=0.028 Sum_probs=304.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF 176 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~ 176 (1167)
...+..++..+.+ .+++++|++.|+++|...|+ ..+|..++..+.+.|++++|++.|+++|...|.+.+.|+..+..
T Consensus 127 a~~~k~~G~~~~~--~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 127 AAKLKEKGNKAYR--NKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456688888877 48999999999999999996 67899999999999999999999999999999999999999998
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh------------------
Q 001064 177 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ------------------ 238 (1167)
Q Consensus 177 ~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~------------------ 238 (1167)
+. ..|++++|+..|..++...+.+ ...+...+...+.. .+...+..+++..+.+
T Consensus 204 ~~-~lg~~~eA~~~~~~~~~~~~~~--~~~~~~~~~~~l~~-----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 204 YD-GLGKYADALLDLTASCIIDGFR--NEQSAQAVERLLKK-----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HH-HcCCHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHH-----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 88 7899999999888776643332 22222222221111 0111112222211110
Q ss_pred ---------------HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcccc
Q 001064 239 ---------------LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 239 ---------------~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
...+...+..+... ......+++..+....... .
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~---~~~~~y~~A~~~~~~al~~----~------------------------ 324 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPES---KADESYEEAARAFEKALDL----G------------------------ 324 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHh---hhhhhHHHHHHHHHHHHhc----C------------------------
Confidence 00111111110000 0001112221111000000 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
... .........+..+|...+++++|+..|+++|. ++|.....|..++..+...|++++|+..|++++..
T Consensus 325 -~~~-~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 325 -KLG-EKEAIALNLRGTFKCLKGKHLEALADLSKSIE--------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred -CCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000 01111334446678889999999999999998 78888889999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
+|.++++|+.++.++...|++++|+..|++++.+. |++...|+.++.++.+.|++++|+..|+++ +++.|++..+|..
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~a-l~~~P~~~~~~~~ 472 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRC-KKNFPEAPDVYNY 472 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCChHHHHH
Confidence 99999999999999999999999999999999988 888999999999999999999999999998 7889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 543 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e 543 (1167)
++.++..+|++++|+..|++|+.+.|...........+...+..++...|++++|+.+|+++++.+|++...+..++.+.
T Consensus 473 lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999987532111111123333444444468999999999999999999998888888888
Q ss_pred hhCCChhHHHHHHHHHHHHhhcC
Q 001064 544 SIQSSPKQIDFLEQLVDKFLMSN 566 (1167)
Q Consensus 544 ~~~~~~~~~~~ar~l~eral~~~ 566 (1167)
...+. ++.+..+|++++...
T Consensus 553 ~~~g~---~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 553 LQQGD---VDEALKLFERAAELA 572 (615)
T ss_pred HHccC---HHHHHHHHHHHHHHh
Confidence 88776 677889999998764
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=2.1e-22 Score=251.41 Aligned_cols=427 Identities=14% Similarity=0.128 Sum_probs=317.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 213 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~ 213 (1167)
..++..+..+.+.|++++|++.|+++|...|+ ..+|...+..+. ..|++++|+..|+++|+.. +.....|...+.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~-~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~a~ 202 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHN-ALGDWEKVVEDTTAALELD---PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcC---CCCHHHHHHHHH
Confidence 45777899999999999999999999999986 678988888888 6899999999999999954 445788999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhcchhhH---HHHHHHH-H--------HHHhcCCCcccccHHHHHHHHHHhhhCCCccchh
Q 001064 214 YEYMQQEWSRVAMIYTRILENPIQQL---DRYFSSF-K--------EFAASRPLSELRTAEEVDAAAVAVAAAPSETGAE 281 (1167)
Q Consensus 214 ~e~~~~~~~~A~~iy~r~l~~p~~~~---~~~~~~~-~--------~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~ 281 (1167)
....+++++.|...|..++.++..+. ..++... . ......+ ..+....... .++..+... .
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~----~~~~~~~~~-~- 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVG----NYLQSFRPK-P- 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHH----HHHHHccCC-c-
Confidence 99999999999999988877643321 1222111 1 1101110 0000000000 000000000 0
Q ss_pred hhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHH
Q 001064 282 VKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYL 361 (1167)
Q Consensus 282 ~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~ 361 (1167)
..+. +....+.... ... ..+ .+..........+.+++|+..|++++.. ..+++.....|..++
T Consensus 276 --~~~~--~~~~~~~~~~-----~~~-~~~--~l~~~~~e~~~~~~y~~A~~~~~~al~~-----~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 276 --RPAG--LEDSNELDEE-----TGN-GQL--QLGLKSPESKADESYEEAARAFEKALDL-----GKLGEKEAIALNLRG 338 (615)
T ss_pred --chhh--hhcccccccc-----ccc-chH--HHHHHHHHhhhhhhHHHHHHHHHHHHhc-----CCCChhhHHHHHHHH
Confidence 0000 0000000000 000 000 1111101113456889999999999972 124567778899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH
Q 001064 362 DFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 362 ~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~ 441 (1167)
.++...|++++|+..|++++..+|.+...|+.++.++...|++++|+..|++++++. |+++.+|+..+.++...|++++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999987 8899999999999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH
Q 001064 442 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 521 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i 521 (1167)
|+..|+++ ++++|++...|+.++.++.++|++++|+.+|++++...|. .+.++..++.++.. .|++++|++.
T Consensus 418 A~~~~~ka-l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~-~g~~~~A~~~ 489 (615)
T TIGR00990 418 AGKDYQKS-IDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE------APDVYNYYGELLLD-QNKFDEAIEK 489 (615)
T ss_pred HHHHHHHH-HHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-ccCHHHHHHH
Confidence 99999998 7899999999999999999999999999999999998864 37788889998776 9999999999
Q ss_pred HHHHHhhcCCCHHHHHHH--------HHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001064 522 LVDSLDHVQLSKPLLEAL--------IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 593 (1167)
Q Consensus 522 ~~kal~~~p~~~~l~~~~--------~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 593 (1167)
|++++++.|.+...+... +.++ .. .+.+.+..+|++++...+++. .++..........|
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~-~~---~~~~eA~~~~~kAl~l~p~~~---------~a~~~la~~~~~~g 556 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQ-WK---QDFIEAENLCEKALIIDPECD---------IAVATMAQLLLQQG 556 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHH-Hh---hhHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHHHcc
Confidence 999999998754333211 1121 11 236778999999998876553 36777888888999
Q ss_pred CHHHHHHHHHHHHhhhCC
Q 001064 594 DAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 594 d~~~~~~v~~r~~~~~~~ 611 (1167)
+.+.+.+.+++..++.+.
T Consensus 557 ~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 557 DVDEALKLFERAAELART 574 (615)
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999988654
No 20
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=99.92 E-value=2.8e-25 Score=214.66 Aligned_cols=115 Identities=43% Similarity=0.659 Sum_probs=104.0
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcC-CcccchhchHHHHHHHhcCC--CcceeEeeeeccccCCCce
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDG-DSTESASSMLDIHSLVISLN--FTAIEIKTINSLGSWNGGV 794 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g-~~~~~~~~~~~i~~~~~~l~--~~~~~i~~~d~q~~~~~~i 794 (1167)
|.+||+.||++||++|+++|+.|++||+++|.|+ |+| .. ..|.++|.++|++|| ..+++|.++|||++.+++|
T Consensus 2 ~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~-~~~~~~---~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~~i 77 (119)
T cd00780 2 AEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLS-REGMKQ---VTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSGGV 77 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEE-ECCceE---ecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCCCE
Confidence 5789999999999999999999999999987665 677 43 446677899999999 5577899999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEecc
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 837 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 837 (1167)
+|+|+|.|+.++. ++++|+|+|+|.+++++|||.||||||++
T Consensus 78 li~V~G~~~~~~~-~~~~F~q~F~L~~~~~~~~I~nD~fr~~~ 119 (119)
T cd00780 78 IVMVTGSLKLDEQ-PPRKFSQTFVLAPQNGGYFVLNDIFRFVD 119 (119)
T ss_pred EEEEEEEEEECCC-CceeEeEEEEEEecCCeEEEEeeEEEecC
Confidence 9999999999875 79999999999999999999999999985
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.2e-21 Score=244.13 Aligned_cols=355 Identities=12% Similarity=-0.001 Sum_probs=300.7
Q ss_pred cccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 001064 69 AGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 69 ~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~ 148 (1167)
+..++.. |+.+.++..++.++..+|.+.++++.|+..... .|++++|...|++++..+|++..+|..++.++...|+
T Consensus 49 ~~~~~~~-g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~--~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 49 AIACLRK-DETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA--SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHhc-CCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 3344444 999999999999999999999999999977765 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH
Q 001064 149 MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY 228 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy 228 (1167)
+++|+..|++++...|.+..+|...+..+. ..|++++|...|++++...|. +...+..... +...|++++|..+|
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~-~~g~~~eA~~~~~~~~~~~P~---~~~a~~~~~~-l~~~g~~~eA~~~~ 200 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLV-LMDKELQAISLARTQAQEVPP---RGDMIATCLS-FLNKSRLPEDHDLA 200 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCCChHHHHHHHHHHHHhCCC---CHHHHHHHHH-HHHcCCHHHHHHHH
Confidence 999999999999999999999999999988 789999999999999886554 3455544433 56679999999999
Q ss_pred HHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchH
Q 001064 229 TRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEA 308 (1167)
Q Consensus 229 ~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~ 308 (1167)
++++...+......+
T Consensus 201 ~~~l~~~~~~~~~~~----------------------------------------------------------------- 215 (656)
T PRK15174 201 RALLPFFALERQESA----------------------------------------------------------------- 215 (656)
T ss_pred HHHHhcCCCcchhHH-----------------------------------------------------------------
Confidence 998776321111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHH----HHHHHHHHHHhc
Q 001064 309 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNK----VVKLYERCLIAC 384 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~----a~~~yeral~~~ 384 (1167)
......+...+++++|+..|++++. ++|.....|..++..+...|++++ |+..|++++..+
T Consensus 216 -------~~l~~~l~~~g~~~eA~~~~~~al~--------~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 216 -------GLAVDTLCAVGKYQEAIQTGESALA--------RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred -------HHHHHHHHHCCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 0111234566778888999999998 677778899999999999999885 899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
|.+..+|..++.++...|++++|+..|++++.+. |+++.++..++.++.+.|++++|+..|+++ ++.+|++...+...
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~a-l~~~P~~~~~~~~~ 358 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQL-AREKGVTSKWNRYA 358 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCccchHHHHHH
Confidence 9999999999999999999999999999999987 889999999999999999999999999998 77899988777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+.++...|++++|+..|+++++..|.. + ..++++|+..|.++++..+..
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~--------~-----------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASH--------L-----------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhh--------c-----------hhhHHHHHHHHHHHHHhcCCc
Confidence 888889999999999999999998642 0 234567888888888866444
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=6.8e-23 Score=260.47 Aligned_cols=410 Identities=11% Similarity=-0.001 Sum_probs=268.6
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
|+.+++++.+.+++..+|.+..+|..++..+... +++.+|..+|+++|+.+|.+..+|..++.++...|++++|+.++
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5666666666666666677766677777666653 56667777777777777777777777777777777777777777
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 236 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~ 236 (1167)
+++++..|.+.. |..++..+. ..|++++|...|++++...|. ...++..++..+...+..+.|...+++++..|.
T Consensus 107 ~~~l~~~P~~~~-~~~la~~l~-~~g~~~~Al~~l~~al~~~P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~ 181 (765)
T PRK10049 107 KQLVSGAPDKAN-LLALAYVYK-RAGRHWDELRAMTQALPRAPQ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPA 181 (765)
T ss_pred HHHHHhCCCCHH-HHHHHHHHH-HCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHH
Confidence 777777777766 666666666 556777777777777764433 456666666666666666666666666555321
Q ss_pred h----hHHHHHHHHHHHHhcCCCccccc---HHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001064 237 Q----QLDRYFSSFKEFAASRPLSELRT---AEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 309 (1167)
Q Consensus 237 ~----~~~~~~~~~~~~~~~~~~~~~~~---~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~ 309 (1167)
. ............ ......+... .+++......+...... .| ....
T Consensus 182 ~~~~l~~~~~~~~~r~~-~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~------------~p--------------~~~~ 234 (765)
T PRK10049 182 EKRDLEADAAAELVRLS-FMPTRSEKERYAIADRALAQYDALEALWHD------------NP--------------DATA 234 (765)
T ss_pred HHHHHHHHHHHHHHHhh-cccccChhHHHHHHHHHHHHHHHHHhhccc------------CC--------------ccch
Confidence 1 001111111110 0000000000 01111000000000000 00 0000
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-
Q 001064 310 ELEKY-IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY- 387 (1167)
Q Consensus 310 ~~~~~-i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~- 387 (1167)
..... +.... .+...+++.+|+..|+++++. .+..|.....| +++.+...|++++|+.+|++++...|..
T Consensus 235 ~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~-----~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 235 DYQRARIDRLG-ALLARDRYKDVISEYQRLKAE-----GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred HHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhcc-----CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 11111 11112 224557889999999998873 22235555566 3777888999999999999998877655
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc------------c--ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001064 388 ---PEYWIRYVLCMEASGSMDLAHNALARATHVFVK------------R--LPEIHLFAARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 388 ---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p------------~--~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
.+.+..++..+...|++++|+.++++++...|+ + ...+++.++.++...|++++|+.+|+++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a- 385 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL- 385 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 356777777778889999999999999887631 1 2346778888999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 451 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 451 ~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
+...|++..+|+.++.++...|++++|+.+|++++...|++ +.++...+..... .|++++|..+++++++..|
T Consensus 386 l~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~------~~l~~~~a~~al~-~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 386 AYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN------INLEVEQAWTALD-LQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCC
Confidence 78899999999999999999999999999999999998643 5677777777665 8899999999999999999
Q ss_pred CCHHHH
Q 001064 531 LSKPLL 536 (1167)
Q Consensus 531 ~~~~l~ 536 (1167)
+++.+.
T Consensus 459 d~~~~~ 464 (765)
T PRK10049 459 QDPGVQ 464 (765)
T ss_pred CCHHHH
Confidence 988544
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=2.9e-21 Score=245.67 Aligned_cols=420 Identities=11% Similarity=0.034 Sum_probs=308.8
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
++|.-+.-|..++.. .|+.++|+++|++++...|.....|..++.++.+.+++++|+.+|+++|...|.+.++|.
T Consensus 13 ~~~~~~~d~~~ia~~-----~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 13 LSNNQIADWLQIALW-----AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344455566666554 368899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAA 251 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~ 251 (1167)
.++..+. ..+++++|+..+++++...|.+ .. |..++..+...++++.|...|+++++..|.+.+.++.....+..
T Consensus 88 ~la~~l~-~~g~~~eA~~~l~~~l~~~P~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 88 GLILTLA-DAGQYDEALVKAKQLVSGAPDK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHhCCCC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999888 6899999999999999966554 56 88899999999999999999999999988887776654443322
Q ss_pred cCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHH---HHHHHHHH
Q 001064 252 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE---MYKKAKEF 328 (1167)
Q Consensus 252 ~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~---~y~~~~~~ 328 (1167)
... .+++.. .+..... .|+.. ...+.. ......+.. .....+++
T Consensus 163 ~~~------~e~Al~----~l~~~~~------------~p~~~---------~~l~~~--~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 163 NRL------SAPALG----AIDDANL------------TPAEK---------RDLEAD--AAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred CCC------hHHHHH----HHHhCCC------------CHHHH---------HHHHHH--HHHHHHHhhcccccChhHHH
Confidence 211 111111 0110000 00000 000000 000000000 01122233
Q ss_pred ---HHHHHHHHhhhcCCCcccCCCC-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc
Q 001064 329 ---DSKIIGFETAIRRPYFHVKPLS-VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC---ANYPEYWIRYVLCMEAS 401 (1167)
Q Consensus 329 ---~~a~~~~e~al~r~~~~v~pld-~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~---p~~~~~w~~ya~~l~~~ 401 (1167)
++|+..|+.+++. +...|.. +.....+...+..+...+++++|+..|++++... |.+...|+ +.++...
T Consensus 210 ~~ad~Al~~~~~ll~~--~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~ 285 (765)
T PRK10049 210 AIADRALAQYDALEAL--WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV--ASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHhh--cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH--HHHHHhc
Confidence 6678888888752 0111111 1122233332333356689999999999999875 44555664 7778889
Q ss_pred CCHHHHHHHHHHHHHhhhccC----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC-------------C--hHHHHH
Q 001064 402 GSMDLAHNALARATHVFVKRL----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSP-------------G--LLEAII 462 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~p~~----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P-------------~--~~~~~~ 462 (1167)
|+.++|+.+|++++... |.. ...+..++..+.+.|++++|+.+++++ ....| + ...+++
T Consensus 286 g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~-~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 286 HQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHT-INNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred CCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH-hhcCCceEeecCCCCCCCCchHHHHHH
Confidence 99999999999998765 433 345556666678899999999999997 55555 2 245678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 463 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 463 ~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
.++.++...|++++|+.+|++++...|.+ +.++..++.++.. .|++++|+++++++++..|++..++...+..
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~-~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGN------QGLRIDYASVLQA-RGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 88899999999999999999999998653 6799999998766 9999999999999999999999999988888
Q ss_pred HhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 543 ESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 543 e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.+..++ .+.+..++++++...|+++
T Consensus 437 al~~~~---~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 437 ALDLQE---WRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHhCC---HHHHHHHHHHHHHhCCCCH
Confidence 887776 6778999999999988876
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=9.5e-21 Score=235.99 Aligned_cols=371 Identities=10% Similarity=-0.033 Sum_probs=296.1
Q ss_pred CCCcccccccCCCCchHHHHHHHHHHhCCC---CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001064 66 GAAAGQELVDGSAMSGEEDRLWNIVKANSS---DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH 142 (1167)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~---d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~ 142 (1167)
.|.+-.+|.+ .+++.---.+...-+.... +.......+..... +|+..+|+.+++..+...|.+..++..++..
T Consensus 9 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~ 85 (656)
T PRK15174 9 KISPTTLLKQ-EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLR--KDETDVGLTLLSDRVLTAKNGRDLLRRWVIS 85 (656)
T ss_pred ccCchhhhhh-hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHh--cCCcchhHHHhHHHHHhCCCchhHHHHHhhh
Confidence 3444455554 5555533333333332222 22222233333332 5899999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHH
Q 001064 143 EARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWS 222 (1167)
Q Consensus 143 e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~ 222 (1167)
....|+++.|+..|++++...|.+.+.|...+..+. ..|++++|+..|++++...|. ...+|...+..+...|+++
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~-~~g~~~~Ai~~l~~Al~l~P~---~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL-KSKQYATVADLAEQAWLAFSG---NSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCChH
Confidence 999999999999999999999999999999999988 689999999999999996554 5788999999999999999
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccc
Q 001064 223 RVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVS 302 (1167)
Q Consensus 223 ~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~ 302 (1167)
.|...|++++...+.+...++..
T Consensus 162 eA~~~~~~~~~~~P~~~~a~~~~--------------------------------------------------------- 184 (656)
T PRK15174 162 QAISLARTQAQEVPPRGDMIATC--------------------------------------------------------- 184 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH---------------------------------------------------------
Confidence 99999998887655543322210
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001064 303 AGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI 382 (1167)
Q Consensus 303 ~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~ 382 (1167)
..+...+++++|+..|+++++. .|.+ ....+...+..+...|++++|+..|++++.
T Consensus 185 -----------------~~l~~~g~~~eA~~~~~~~l~~-----~~~~--~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 185 -----------------LSFLNKSRLPEDHDLARALLPF-----FALE--RQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred -----------------HHHHHcCCHHHHHHHHHHHHhc-----CCCc--chhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0123446667777778887762 1111 122334445666789999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001064 383 ACANYPEYWIRYVLCMEASGSMDL----AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 383 ~~p~~~~~w~~ya~~l~~~g~~e~----A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 458 (1167)
..|.++.+|+.++..+...|++++ |+..|++++.+. |++..++..++.++...|++++|+..|+++ ++++|++.
T Consensus 241 ~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a-l~l~P~~~ 318 (656)
T PRK15174 241 RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQS-LATHPDLP 318 (656)
T ss_pred cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCH
Confidence 999999999999999999999985 899999999987 889999999999999999999999999998 78999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
.++..++.++.+.|++++|+..|++++...|.. +.++...+..+.. .|++++|+..|+++++..|++.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~------~~~~~~~a~al~~-~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVT------SKWNRYAAAALLQ-AGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999999999999999987642 3344555666555 9999999999999999998864
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.5e-20 Score=238.66 Aligned_cols=537 Identities=11% Similarity=-0.041 Sum_probs=352.8
Q ss_pred cccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhH
Q 001064 36 AGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNI 115 (1167)
Q Consensus 36 ~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~ 115 (1167)
|..+...||.++|+..|.++...+|.+.+....+.+++...|++++++..++++++.+|.|...+..|+.+ ++.
T Consensus 51 a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i------~~~ 124 (987)
T PRK09782 51 ALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI------PVE 124 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh------ccC
Confidence 34455679999999999999999999999999999998888999999999999999999998888877655 366
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------------------HHHhCCHHHHHHH
Q 001064 116 VKIRRVYDAFLAEFPLCYGYWKKYADH----------------------------------------EARVGSMDKVVEV 155 (1167)
Q Consensus 116 ~~ar~~ye~~l~~~P~~~~~W~~~a~~----------------------------------------e~~~~~~e~A~~l 155 (1167)
.+|..+|+++++.+|++.++...++.. +.++++++.|+++
T Consensus 125 ~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 125 VKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 789999999999999998777655554 3334566667777
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-
Q 001064 156 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN- 234 (1167)
Q Consensus 156 ~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~- 234 (1167)
+.++++..|.+.+.+..+...++...++ +.+..+|...++ .+..+|..|+.++...|+.+.|..++++.=..
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk------~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF------TDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc------cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 7777777777777666666655521244 555555554222 24677777777777777777777666653222
Q ss_pred --chhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHhh---hCCCccch--hhhccccccCCccc--c-ccCCccc-
Q 001064 235 --PIQQLDRYFSSFKEFAAS-RPLSELRTAEEVDAAAVAVA---AAPSETGA--EVKANEEEVQPDAT--E-QTSKPVS- 302 (1167)
Q Consensus 235 --p~~~~~~~~~~~~~~~~~-~~~~~~~~~ee~~~~~~~~~---~~~~e~~~--~~~~~e~~~~p~~~--e-~~~~~~~- 302 (1167)
.+.+-.-+|...+..... .....+.. .....++..+. ....+... ....+ ....|... + ...-...
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTV-QFADNRQYVVGATLPVLLKEGQYDAAQKL-LATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhh-hhHHHHHHHHHHHHHHHHhccHHHHHHHH-hcCCCcchHHHHHHhhcccc
Confidence 222333333322211110 00000000 00000011110 00000000 00000 00000000 0 0000000
Q ss_pred cCcchH-HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhcC-C----------------------------
Q 001064 303 AGLTEA-EELEKYIAV----------REEMYKKAKEFDSKIIGFETAIRR-P---------------------------- 342 (1167)
Q Consensus 303 ~~~~~~-~~~~~~i~~----------~~~~y~~~~~~~~a~~~~e~al~r-~---------------------------- 342 (1167)
....+. .+|+.+... ..-.....+++.+|...|+.+... .
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 000000 000000000 000001112222222222222210 0
Q ss_pred ----------------------------CcccCCCChh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHH
Q 001064 343 ----------------------------YFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWI 392 (1167)
Q Consensus 343 ----------------------------~~~v~pld~~--~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~ 392 (1167)
+-..-|.+|. +...|+.++.++.. ++.++|+..|.+++...|... ..+
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L 513 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHR 513 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHH
Confidence 0001124455 67889999888776 788889999999999988653 355
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC
Q 001064 393 RYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG 472 (1167)
Q Consensus 393 ~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g 472 (1167)
.++..+...|++++|+..|++++... +. ...++..+.++.+.|++++|..+|+++ +++.|++..++..++....+.|
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~-p~-~~a~~~la~all~~Gd~~eA~~~l~qA-L~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHD-MS-NEDLLAAANTAQAAGNGAARDRWLQQA-EQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccC-CC-cHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHhCC
Confidence 55666678999999999999987653 33 456788888899999999999999998 6788988877766665556679
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHH
Q 001064 473 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQI 552 (1167)
Q Consensus 473 ~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~ 552 (1167)
++++|+..|+++++..|. +.++..++.++.+ .|++++|...|++++++.|++..++..+..+....+. .
T Consensus 591 r~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~---~ 659 (987)
T PRK09782 591 QPELALNDLTRSLNIAPS-------ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD---I 659 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---H
Confidence 999999999999999862 5688899988777 9999999999999999999999999988888777766 5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 553 DFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 553 ~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+.+..+|++++...|+++ +++..........|+.+.+...+++..++-|..
T Consensus 660 eeAi~~l~~AL~l~P~~~---------~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 660 AQSREMLERAHKGLPDDP---------ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 668889999999888776 588888888899999999999999999998864
No 26
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=9e-20 Score=212.57 Aligned_cols=444 Identities=17% Similarity=0.190 Sum_probs=322.4
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hCCHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR---VGSMDKVV 153 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~---~~~~e~A~ 153 (1167)
+.....+..++..+..|++++.....|+.++.+. +++++.+..-..+-+.+|.++.+|+.|+.-+.. .++...+.
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~--~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKL--GDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHh--cchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 4567889999999999999999999999999985 799999999999999999999999999987763 36778899
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhc------CCHHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHh---hhHHH
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTY------GDPETIRRLFERGLAYVGTDYL-SFPLWDKYIEYEYMQ---QEWSR 223 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~------~~~~~Ar~~feral~~~g~d~~-s~~lw~~y~~~e~~~---~~~~~ 223 (1167)
.+|+++|.. .+++.+|..|+.|..... ++++..|.+|+++|...|.++. ...||..|++|+... -+.+.
T Consensus 171 ~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~q 249 (881)
T KOG0128|consen 171 ELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQ 249 (881)
T ss_pred HHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999996 499999999999988532 4678999999999999998877 468999999999864 23466
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcccc
Q 001064 224 VAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 224 A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
+..++.+.|..|.. .+.....|....+.+.+.
T Consensus 250 v~a~~~~el~~~~D-~~~~~~~~~~~sk~h~~~----------------------------------------------- 281 (881)
T KOG0128|consen 250 VIALFVRELKQPLD-EDTRGWDLSEQSKAHVYD----------------------------------------------- 281 (881)
T ss_pred HHHHHHHHHhccch-hhhhHHHHHHHHhcchHH-----------------------------------------------
Confidence 78889999998843 333322332221111000
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
......+...++..+-+..|++.+. .++.....|+.|++|+.+.|++.+....++|++.-
T Consensus 282 ------------~~~~~~~~a~~~l~~~~~~~e~~~q--------~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 282 ------------VETKKLDDALKNLAKILFKFERLVQ--------KEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred ------------HHhccHHHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 0000011112222222233666655 56677789999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhcCCChHHHH
Q 001064 384 CANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG-ARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~-~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~-A~~~~~~a~~~~~P~~~~~~ 461 (1167)
.+...+.|+.|+.++.. ++-.+.+..++-|++..+ |....+|-.+-..+++.+.... ....+++.+.. -..++
T Consensus 342 ~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~c-p~tgdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~ 416 (881)
T KOG0128|consen 342 MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSC-PWTGDLWKRALLALERNREEITVIVQNLEKDLSM----TVELH 416 (881)
T ss_pred ccccHHHHhhhhhhcccccccccccccccchhhcCC-chHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHH
Confidence 99999999999998864 444456677888888765 6667777776655566554332 23333333111 11122
Q ss_pred HHHHHHHHHcC------CHHHHHHHHHHHHHhhhCCCc--cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 462 IKHANMERRLG------NLEDAFSLYEQAIAIEKGKEH--SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 462 ~~~a~~e~r~g------~~e~A~~~~~kAl~~~~~~~~--~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
..+..+..+.+ +++..++.|..|......-.. ....-.++..|+.+++...++.+.||.||...+.....+.
T Consensus 417 ~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i 496 (881)
T KOG0128|consen 417 NDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI 496 (881)
T ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH
Confidence 22322222222 456667777777776542110 1122346678899999989999999999999998877777
Q ss_pred H-HHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 001064 534 P-LLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH 605 (1167)
Q Consensus 534 ~-l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~ 605 (1167)
. .|..|+.+|..+++ ...+|.++.+|+.... .+++..++++.|..||..+|+++.+..+..+.
T Consensus 497 ag~Wle~~~lE~~~g~---~~~~R~~~R~ay~~~~------~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 497 AGKWLEAINLEREYGD---GPSARKVLRKAYSQVV------DPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred HHHHHHHHhHHHHhCC---chhHHHHHHHHHhcCc------CchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 7 99999999999877 4457888888877643 33456789999999999999988776555444
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-19 Score=199.73 Aligned_cols=502 Identities=12% Similarity=0.052 Sum_probs=336.8
Q ss_pred CCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC
Q 001064 50 GNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEF 129 (1167)
Q Consensus 50 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~ 129 (1167)
...++-.|..|+++......++.-. .+......+-..++ ..++-+-+ .+++++|+++|..+|++.
T Consensus 81 ~k~~kkrn~~ps~~~gep~~~~~~a---~~~e~~~k~A~~lK----------~~GN~~f~--~kkY~eAIkyY~~AI~l~ 145 (606)
T KOG0547|consen 81 AKNKKKRNVYPSSPDGEPDEEQKKA---MLKEERLKYAAALK----------TKGNKFFR--NKKYDEAIKYYTQAIELC 145 (606)
T ss_pred ccCcccccCCCCCCCCCcchhhhhc---cChHHHHHHHHHHH----------hhhhhhhh--cccHHHHHHHHHHHHhcC
Confidence 3344444466666655554444322 23333333333333 34444444 489999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 001064 130 PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWD 209 (1167)
Q Consensus 130 P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~ 209 (1167)
|+-+-++-+.+-.+...|+++++++-..++|.+.|..+...+.-+.-.. .+|+.+++. |+--+..+-.+|....+-.
T Consensus 146 p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E-~lg~~~eal--~D~tv~ci~~~F~n~s~~~ 222 (606)
T KOG0547|consen 146 PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE-QLGKFDEAL--FDVTVLCILEGFQNASIEP 222 (606)
T ss_pred CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH-hhccHHHHH--HhhhHHHHhhhcccchhHH
Confidence 9988899999999999999999999999999999999998888888766 678887763 4433333333444444444
Q ss_pred HHHHHHHHhhhHHHHHHHHH--HHHhcch-hhHHHHHHHHHHHHhcCCCcccc-cHHHHHHHHHHhhhCCCccchhh-hc
Q 001064 210 KYIEYEYMQQEWSRVAMIYT--RILENPI-QQLDRYFSSFKEFAASRPLSELR-TAEEVDAAAVAVAAAPSETGAEV-KA 284 (1167)
Q Consensus 210 ~y~~~e~~~~~~~~A~~iy~--r~l~~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~ee~~~~~~~~~~~~~e~~~~~-~~ 284 (1167)
..-+.+.+++. ..+.+.|. |--.+|. ..+..+|..|..-.......... ........-+.++....|..... +.
T Consensus 223 ~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~ 301 (606)
T KOG0547|consen 223 MAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDK 301 (606)
T ss_pred HHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHH
Confidence 44444444332 33333333 1111222 23455555544322211111111 11111111122222222211100 00
Q ss_pred cccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHH
Q 001064 285 NEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 364 (1167)
Q Consensus 285 ~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~ 364 (1167)
...+..........+... ...+.+...+..++-.+.-.++...+...|+.+|+ +++.....+...+..+
T Consensus 302 ~te~~~~~~~~~~~n~~d---~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~--------l~~~~~~lyI~~a~~y 370 (606)
T KOG0547|consen 302 ATEECLGSESSLSVNEID---AELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK--------LDPAFNSLYIKRAAAY 370 (606)
T ss_pred HHHHhhhhhhhccccccc---hhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh--------cCcccchHHHHHHHHH
Confidence 000000000000011111 11133344445555556666778888888999998 7777777788888888
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
...++.++-...|.+|...+|.++++++.-+++..-++++++|..-|++++.+. |.+.-.++.++-.+.+++.++++..
T Consensus 371 ~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~ 449 (606)
T KOG0547|consen 371 ADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMK 449 (606)
T ss_pred hhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998888999999999999999988 8888899999999999999999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 524 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~k 524 (1167)
.|+.+ ++..|+.++++..++.++..++++++|.+.|++|+++.|........+..+++-+-++.+-.+++..|.+++++
T Consensus 450 ~Fee~-kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 450 TFEEA-KKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK 528 (606)
T ss_pred HHHHH-HHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH
Confidence 99998 77899999999999999999999999999999999999753221122333444444443335899999999999
Q ss_pred HHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCH
Q 001064 525 SLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDA 595 (1167)
Q Consensus 525 al~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~ 595 (1167)
|++.+|.+..-++.++.|++.++. ++++..+||+++..- +...|..+.|---+-.+-+.
T Consensus 529 A~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~lA---------rt~~E~~~a~s~aeAAraq~ 587 (606)
T KOG0547|consen 529 AIELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQLA---------RTESEMVHAYSLAEAARAQI 587 (606)
T ss_pred HHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999876 788999999986642 33445666666555443333
No 28
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.89 E-value=1.3e-19 Score=201.87 Aligned_cols=392 Identities=18% Similarity=0.258 Sum_probs=295.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001064 123 DAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 202 (1167)
Q Consensus 123 e~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~ 202 (1167)
++-++.+|.+...|..+++-+..+ .+++++++|++.+..+|.+...|..|+.-++ ..++++.+..+|.|+|..+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El-~skdfe~VEkLF~RCLvkv---- 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIEREL-ASKDFESVEKLFSRCLVKV---- 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH----
Confidence 667889999999999999877766 9999999999999999999999999999999 6789999999999999754
Q ss_pred CCHHHHHHHHHHHHHhh-hH----HHHHHHHHHHHhc-chh-hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCC
Q 001064 203 LSFPLWDKYIEYEYMQQ-EW----SRVAMIYTRILEN-PIQ-QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 275 (1167)
Q Consensus 203 ~s~~lw~~y~~~e~~~~-~~----~~A~~iy~r~l~~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~ 275 (1167)
.+-+||..|+.+-.+.+ .. +.-...|+-++.. -++ ..-.+|.+|..|....+
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~ve--------------------- 142 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVE--------------------- 142 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccc---------------------
Confidence 23689999999877642 22 2223445555442 111 12345666655532210
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHH
Q 001064 276 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELE 355 (1167)
Q Consensus 276 ~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~ 355 (1167)
.. .-|.++.+.+..++.|.++|..|+- +- -.
T Consensus 143 --a~----------------------------------------gk~ee~QRI~~vRriYqral~tPm~-----nl--Ek 173 (656)
T KOG1914|consen 143 --AV----------------------------------------GKYEENQRITAVRRIYQRALVTPMH-----NL--EK 173 (656)
T ss_pred --cc----------------------------------------ccHHHHHHHHHHHHHHHHHhcCccc-----cH--HH
Confidence 00 0134555777778889999975432 11 25
Q ss_pred HHHHHHHHHHHc-------------CChHHHHHHHHHHHHhc-------CC-----------CHHHHHHHHHHHHHcCCH
Q 001064 356 NWHNYLDFIERD-------------GDFNKVVKLYERCLIAC-------AN-----------YPEYWIRYVLCMEASGSM 404 (1167)
Q Consensus 356 ~W~~y~~~~e~~-------------g~~~~a~~~yeral~~~-------p~-----------~~~~w~~ya~~l~~~g~~ 404 (1167)
+|..|..|+... .++..|+.+|+...... |. ..++|.+++.|....+-.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 799999998533 34667888877754431 11 135899999977554321
Q ss_pred --------HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhhhcCCChHHHHH
Q 001064 405 --------DLAHNALARATHVFVKRLPEIHLFAARFKEQNGD--------------IDGARAAYQLVHTETSPGLLEAII 462 (1167)
Q Consensus 405 --------e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~--------------~~~A~~~~~~a~~~~~P~~~~~~~ 462 (1167)
....-+|+.++... ..++++|+.++.++...++ -+++.++|++++..+.-.+..+++
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l-~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYL-GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445677887755 7899999999999988888 788999999986555666788899
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHH
Q 001064 463 KHANMERRLGN---LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEAL 539 (1167)
Q Consensus 463 ~~a~~e~r~g~---~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~ 539 (1167)
.++++++..-+ .+....+|.+++.....+ ++ -+|++|+.+..+..| ++.||.||.+|.+..-..-.++..-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~---~t--Lv~~~~mn~irR~eG-lkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDID---LT--LVYCQYMNFIRRAEG-LKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccC---Cc--eehhHHHHHHHHhhh-HHHHHHHHHHHhhccCCcchhhHHH
Confidence 99999887766 899999999999987432 32 269999999888666 9999999999998765555677777
Q ss_pred HHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 540 IHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 540 ~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
+.||..+... .+.+.++|+..|...++.+ +....|++|+...+|...++.+.+|..+.
T Consensus 407 A~mEy~cskD--~~~AfrIFeLGLkkf~d~p---------~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 407 ALMEYYCSKD--KETAFRIFELGLKKFGDSP---------EYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhcCC--hhHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7777765332 3568899999999999887 58999999999999999999999999887
No 29
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.88 E-value=9.9e-21 Score=228.79 Aligned_cols=255 Identities=19% Similarity=0.230 Sum_probs=229.2
Q ss_pred HHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCH----HHHHHHHHHHHHcCCHHHH
Q 001064 333 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-ANYP----EYWIRYVLCMEASGSMDLA 407 (1167)
Q Consensus 333 ~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-p~~~----~~w~~ya~~l~~~g~~e~A 407 (1167)
..|++.+. -+|+..-+|..|+.|..+.++.++|+.+.+|||... +... .+|+.|..++..-|.-+..
T Consensus 1445 eDferlvr--------ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1445 EDFERLVR--------SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred HHHHHHHh--------cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 34788776 688888999999999999999999999999999874 2222 3999999988888988899
Q ss_pred HHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001064 408 HNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAI 487 (1167)
Q Consensus 408 ~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~ 487 (1167)
.++|+||++.+ +...+|..+..++++.+.+++|.++|+..+.++. ....+|.+|++++.++++-++|+.++.+||+.
T Consensus 1517 ~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1517 KKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 99999999987 3467999999999999999999999999855544 78999999999999999999999999999999
Q ss_pred hhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 488 EKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 488 ~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
.|..+| -.+...+|.++++ .|+.+++|.+|+..|..+|...++|..|+++|+.+++ .+.+|.+|||++...
T Consensus 1594 lPk~eH----v~~IskfAqLEFk-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR~lfeRvi~l~- 1664 (1710)
T KOG1070|consen 1594 LPKQEH----VEFISKFAQLEFK-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVRDLFERVIELK- 1664 (1710)
T ss_pred cchhhh----HHHHHHHHHHHhh-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHHHHHHHHHhcC-
Confidence 986544 5678899999998 9999999999999999999999999999999999987 567999999999975
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 568 DSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 568 ~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
++.++++.+++.|++||+.+||...+..|..|+.+++...
T Consensus 1665 -----l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1665 -----LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred -----CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999998653
No 30
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.87 E-value=2.8e-19 Score=198.15 Aligned_cols=442 Identities=15% Similarity=0.195 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001064 116 VKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGL 195 (1167)
Q Consensus 116 ~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral 195 (1167)
.++..+|.+++.+|+.+..+|..|+.++.+.+.+.+..++|.+||..||++++||+..|.++++.+.+++.||.+|.|+|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999987777999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCCc---ccccHHHHHHHH
Q 001064 196 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI----QQLDRYFSSFKEFAASRPLS---ELRTAEEVDAAA 268 (1167)
Q Consensus 196 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~----~~~~~~~~~~~~~~~~~~~~---~~~~~ee~~~~~ 268 (1167)
+ .|+.+..||..|.++|+..-..-.+ -.+.+.... ..++..-..+..+..+.... .....+.-.. .
T Consensus 168 R---~npdsp~Lw~eyfrmEL~~~~Kl~~---rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~-~ 240 (568)
T KOG2396|consen 168 R---FNPDSPKLWKEYFRMELMYAEKLRN---RREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAE-K 240 (568)
T ss_pred h---cCCCChHHHHHHHHHHHHHHHHHHH---HHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHH-H
Confidence 9 5666899999999999874222222 122222211 11222111222221111000 0000000000 0
Q ss_pred HHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHH-HHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q 001064 269 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEEL-EKYIAVREEM-----------YKKAKEFDSKIIGFE 336 (1167)
Q Consensus 269 ~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~-~~~i~~~~~~-----------y~~~~~~~~a~~~~e 336 (1167)
.....|.... +.......+.+ ++. ..+.+ .+.+...... +...-+......+|+
T Consensus 241 ---~d~~kel~k~---i~d~~~~~~~~---np~-----~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~e 306 (568)
T KOG2396|consen 241 ---FDFLKELQKN---IIDDLQSKAPD---NPL-----LWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYE 306 (568)
T ss_pred ---HHHHHHHHHH---HHHHHhccCCC---CCc-----cHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHH
Confidence 0000000000 00000000000 000 00000 0111111000 001112233445688
Q ss_pred hhhcCCCcccCCCChhhHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001064 337 TAIRRPYFHVKPLSVTELENWHNYLDFIERD------GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNA 410 (1167)
Q Consensus 337 ~al~r~~~~v~pld~~~~~~W~~y~~~~e~~------g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~v 410 (1167)
++++. + ....+|..||++.... ......+.+|+.+.......++..-.|+..+.......+++.+
T Consensus 307 e~v~~-------l--~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 307 EAVKT-------L--PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHH-------h--hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 88762 2 2356899999987432 2456778889998888777777666666555444455566666
Q ss_pred HHHHH-HhhhccChHHHHHHHHHHHHc-CCHHHHHHHHHHHhh--hcCC--ChHHHHHHHHHHHHHcCC-HHH-HHH-HH
Q 001064 411 LARAT-HVFVKRLPEIHLFAARFKEQN-GDIDGARAAYQLVHT--ETSP--GLLEAIIKHANMERRLGN-LED-AFS-LY 481 (1167)
Q Consensus 411 l~rA~-~~~~p~~~~l~~~~a~~~e~~-g~~~~A~~~~~~a~~--~~~P--~~~~~~~~~a~~e~r~g~-~e~-A~~-~~ 481 (1167)
-.+.+ +.+ .++..+|+.....+.+. .|+. -+|+.+.. +..+ .....|.... .++ ... ... ++
T Consensus 378 a~~l~~e~f-~~s~k~~~~kl~~~~~s~sD~q---~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 378 AVKLTTELF-RDSGKMWQLKLQVLIESKSDFQ---MLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred HHHhhHHHh-cchHHHHHHHHHHHHhhcchhH---HHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 55555 444 67888999888777643 2222 22222111 1112 2233344333 222 222 222 33
Q ss_pred HHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHH
Q 001064 482 EQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDK 561 (1167)
Q Consensus 482 ~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~er 561 (1167)
..++.... +..-.+-..|.++++. .|.+++||++|.+...+.|-+..++..++.||..+..-+ ..++|.+|++
T Consensus 449 ~a~~s~~~-----~~~~tl~s~~l~~~~e-~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~ 521 (568)
T KOG2396|consen 449 SALLSVIG-----ADSVTLKSKYLDWAYE-SGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDR 521 (568)
T ss_pred HHHHHhcC-----CceeehhHHHHHHHHH-hcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHH
Confidence 33333331 2223466788888888 777999999999999999999999999999998764322 6889999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 562 FLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 562 al~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
++...+..+ ++|..|+.||..+|..+.+..++.|+.+.+.++
T Consensus 522 a~~~fg~d~---------~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 522 ALREFGADS---------DLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHhCCCh---------HHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 999887554 699999999999999999999999999998764
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=8.7e-19 Score=222.79 Aligned_cols=524 Identities=9% Similarity=-0.004 Sum_probs=341.4
Q ss_pred ccccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHH------
Q 001064 33 SQAAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEE------ 106 (1167)
Q Consensus 33 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~------ 106 (1167)
-.++.+|...|+.++|.....++...+|...........+ . ++++++..++++++.+|.+.+..+.|+..
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-~---~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~ 157 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-P---VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNA 157 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-c---cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccch
Confidence 3466677777777777777777777777665555544444 3 36677777777777777776666555554
Q ss_pred ----------------------------------HHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Q 001064 107 ----------------------------------TEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR-VGSMDK 151 (1167)
Q Consensus 107 ----------------------------------~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~-~~~~e~ 151 (1167)
+.. .++.++++.+++++++..|.+..++..++++++. +++ ++
T Consensus 158 l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~--l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 158 LRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY--LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH--HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HH
Confidence 333 3677889999999999999999999999999887 477 99
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCC-HHHHH---------------------
Q 001064 152 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLS-FPLWD--------------------- 209 (1167)
Q Consensus 152 A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s-~~lw~--------------------- 209 (1167)
+..+|+..++ .++.+|..|+.+++ ..|+.++|..++++.-.....++.. ..+|.
T Consensus 235 a~al~~~~lk---~d~~l~~ala~~yi-~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~ 310 (987)
T PRK09782 235 LLALQSQGIF---TDPQSRITYATALA-YRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFAD 310 (987)
T ss_pred HHHHhchhcc---cCHHHHHHHHHHHH-HCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHH
Confidence 9999886444 78999999999999 6898888887776633222222211 01110
Q ss_pred -------HHHHHHHHhhh--------------------------------------------------------------
Q 001064 210 -------KYIEYEYMQQE-------------------------------------------------------------- 220 (1167)
Q Consensus 210 -------~y~~~e~~~~~-------------------------------------------------------------- 220 (1167)
..+.++...+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 311 NRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 00122222222
Q ss_pred -HHHHHHHHHHHHhcchhh-H-HHHHHHHHHH-HhcCCCcccccHHHHHHHHHHhhhCCCccchhh-hccccccCCcccc
Q 001064 221 -WSRVAMIYTRILENPIQQ-L-DRYFSSFKEF-AASRPLSELRTAEEVDAAAVAVAAAPSETGAEV-KANEEEVQPDATE 295 (1167)
Q Consensus 221 -~~~A~~iy~r~l~~p~~~-~-~~~~~~~~~~-~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~-~~~e~~~~p~~~e 295 (1167)
.++|+++|++++..+.+. . ..+-..+..+ ..... +.....+.. +..........+ .....+..+ ..+
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~-~~~ 462 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY---LATPAKVAI----LSKPLPLAEQRQWQSQLPGIAD-NCP 462 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc---ccchHHHHH----hccccccchhHHHHhhhhhhhh-hHH
Confidence 222222332222211100 0 0000000000 00000 000000000 000000000000 000000000 000
Q ss_pred ccCCccccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHH
Q 001064 296 QTSKPVSAGLT--EAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 373 (1167)
Q Consensus 296 ~~~~~~~~~~~--~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a 373 (1167)
...+.....+. ....+ ..+..++.. ++..+|+..|.+++. ..|... ....++..+...|++++|
T Consensus 463 ~~~~al~~~p~~~~~~a~----~~LG~~l~~-~~~~eAi~a~~~Al~--------~~Pd~~-~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAW----NRLAKCYRD-TLPGVALYAWLQAEQ--------RQPDAW-QHRAVAYQAYQVEDYATA 528 (987)
T ss_pred HHHHhcccCCCCCCHHHH----HHHHHHHHh-CCcHHHHHHHHHHHH--------hCCchH-HHHHHHHHHHHCCCHHHH
Confidence 00000000000 11111 112233444 577789998999887 333322 233345555789999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc
Q 001064 374 VKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET 453 (1167)
Q Consensus 374 ~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~ 453 (1167)
+..|++++.. +.....|+.++..+...|+.++|...|++++... |....++..++....+.|++++|+..|+++ +++
T Consensus 529 i~~~rka~~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~A-L~l 605 (987)
T PRK09782 529 LAAWQKISLH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRS-LNI 605 (987)
T ss_pred HHHHHHHhcc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHh
Confidence 9999998777 4445678999999999999999999999999976 666666665555555679999999999998 789
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 454 SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 454 ~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
+|+ ..+|..++.++.++|++++|+..|++++...|++ +.++..++.++.. .|++++|+.+|+++++..|++.
T Consensus 606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN------SNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCH
Confidence 997 8999999999999999999999999999998753 7789999988776 9999999999999999999999
Q ss_pred HHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 534 PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 534 ~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
.++..++......++ .+.+...|++++...+++. .|...+.+.+....+...+.+.+.|...+.+..
T Consensus 678 ~a~~nLA~al~~lGd---~~eA~~~l~~Al~l~P~~a---------~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 678 ALIRQLAYVNQRLDD---MAATQHYARLVIDDIDNQA---------LITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCc---------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 999999999988887 6678999999999888775 366677777777777888888888887776653
No 32
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.86 E-value=1.1e-21 Score=190.00 Aligned_cols=113 Identities=35% Similarity=0.618 Sum_probs=102.1
Q ss_pred hHhHHHHHHHHhhhc-CcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc--ceeEeeeecc--ccCCCceE
Q 001064 721 VGSYFVGQYYQVLQQ-QPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSL--GSWNGGVL 795 (1167)
Q Consensus 721 vg~~Fv~~YY~~l~~-~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~--~~~i~~~d~q--~~~~~~i~ 795 (1167)
||+.||++||++|++ +|+.|++||++++++++|+|+ ....|.++|.+++.+|+.+ ++.|+++||| ++.+++|+
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~--~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~i~ 78 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGN--RPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGSIL 78 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTE--CEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSEEE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCc--hhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCcEE
Confidence 799999999999999 999999999766889999998 3445667789999999998 5789999999 57889999
Q ss_pred EEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEe
Q 001064 796 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 835 (1167)
Q Consensus 796 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~ 835 (1167)
|+|+|.++.++..+.++|+|+|+|.+.+++|+|.||||||
T Consensus 79 i~v~G~~~~~~~~~~~~F~q~FvL~~~~~~~~I~nd~~r~ 118 (118)
T PF02136_consen 79 ITVTGQFKEDDNPNPRRFSQTFVLVPQNNGYFIANDIFRF 118 (118)
T ss_dssp EEEEEEEEETTSEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEeEEEecCCCcccEEEEEEEEEEcCCEEEEEeeEEEC
Confidence 9999999999874469999999999999999999999997
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=7.1e-17 Score=201.50 Aligned_cols=170 Identities=7% Similarity=-0.059 Sum_probs=126.1
Q ss_pred cccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhCCHH
Q 001064 73 LVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKY--ADHEARVGSMD 150 (1167)
Q Consensus 73 ~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~--a~~e~~~~~~e 150 (1167)
..++|+++.|++.|+++++.+|.+..+...|+.++-.. |+..+|+..+++++ .|.+..+...+ +.++...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc--CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33448889999999999999999854444777766653 78889999999999 54444444444 77888889999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001064 151 KVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 230 (1167)
Q Consensus 151 ~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r 230 (1167)
+|+++|+++|+..|.+.+++...+..+. ..++.++|+..+++++...|.+ ..+...+.+....++..+|...|++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~----~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTV----QNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcch----HHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999999999999887777776 5688889999999988866653 2223333433445556568999999
Q ss_pred HHhcchhhHHHHHHHHHHHHh
Q 001064 231 ILENPIQQLDRYFSSFKEFAA 251 (1167)
Q Consensus 231 ~l~~p~~~~~~~~~~~~~~~~ 251 (1167)
+++..|.+.+.++..+..+..
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQR 215 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHH
Confidence 999888777777766655543
No 34
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.4e-17 Score=197.55 Aligned_cols=419 Identities=12% Similarity=0.069 Sum_probs=264.7
Q ss_pred ccccccCCcCCcccccCCCCcccCCCCCCC-ccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh
Q 001064 33 SQAAGYNSMNGNVVNEAGNATSTENGTSLG-IESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA 111 (1167)
Q Consensus 33 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~ 111 (1167)
=.+|..|...||+++|-..|-.....+++. +....-++|.+...+++..+..-|+++++.+|++++....|+.++....
T Consensus 311 Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 311 YQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 445666666666666666666666666555 4345555555554466666666666666666666666666666665420
Q ss_pred --hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHhhcCCH
Q 001064 112 --QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG-----VTYSVDIWLHYCIFAINTYGDP 184 (1167)
Q Consensus 112 --~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~-----~P~s~~lw~~ya~~~~~~~~~~ 184 (1167)
+-..++|..+..+.++..|.+.++|+.++.++...+-+.. ..+|.+|+.. .+--+++.-..+.+.+ ..|++
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf-~~g~~ 468 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHF-RLGNI 468 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH-HhcCh
Confidence 1134566666666666666666666666666655433332 4455554421 1122333334444444 45666
Q ss_pred HHHHHHHHHHHHhcC----CCC-CCHH--HHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcc
Q 001064 185 ETIRRLFERGLAYVG----TDY-LSFP--LWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSE 257 (1167)
Q Consensus 185 ~~Ar~~feral~~~g----~d~-~s~~--lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~ 257 (1167)
.+|+..|++|+..+- .|- .+.. +-...+..++...+++.|..+|..+++..|.-++.+....
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~----------- 537 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG----------- 537 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh-----------
Confidence 666666666665411 111 0111 2333344444455566666666666655444333332221
Q ss_pred cccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001064 258 LRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFET 337 (1167)
Q Consensus 258 ~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~ 337 (1167)
.+-.......++...+..
T Consensus 538 --------------------------------------------------------------~ma~~k~~~~ea~~~lk~ 555 (1018)
T KOG2002|consen 538 --------------------------------------------------------------CMARDKNNLYEASLLLKD 555 (1018)
T ss_pred --------------------------------------------------------------HHHHhccCcHHHHHHHHH
Confidence 111222334445556777
Q ss_pred hhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHH-c-----------CC
Q 001064 338 AIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEA-S-----------GS 403 (1167)
Q Consensus 338 al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~--~~~~w~~ya~~l~~-~-----------g~ 403 (1167)
++. +|..++.+|..++.|+.+..++..+.+-|++.+...-. +.-..+.++.++.. . +.
T Consensus 556 ~l~--------~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 556 ALN--------IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHh--------cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 776 77788889999999988888887788877777765222 33344555554432 1 23
Q ss_pred HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 404 MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 483 (1167)
Q Consensus 404 ~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~k 483 (1167)
.+.|+.+|.+++..+ |++...-...+-++...|++.+|+.+|.++ .+..-++.++|+..+.++..+|+|-.|++.|+.
T Consensus 628 ~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqV-rEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQV-REATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHH-HHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888766 666555555778888999999999999997 454556788999999999999999999999999
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001064 484 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 541 (1167)
Q Consensus 484 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~ 541 (1167)
++..+-.+ +.+.++..+++..+. .|.+.+|.....+|+...|.+..+..+++.
T Consensus 706 ~lkkf~~~----~~~~vl~~Lara~y~-~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 706 CLKKFYKK----NRSEVLHYLARAWYE-AGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHhccc----CCHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99987532 336788889999887 888999999999999999999877765443
No 35
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=99.79 E-value=8.8e-20 Score=164.23 Aligned_cols=113 Identities=25% Similarity=0.444 Sum_probs=100.9
Q ss_pred hHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccCCC------ce
Q 001064 721 VGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNG------GV 794 (1167)
Q Consensus 721 vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~~~------~i 794 (1167)
-+..||+-||+.|+++|..|.+||.++|+++ |+|+.+.|.+ .|.+.+.-||.++++|.++||||.+++ +|
T Consensus 15 ~A~eFv~~YY~smD~rR~~i~rlY~~~atlv-WNGn~v~g~e---sls~ff~~LPsS~~qi~~lD~Qpv~dqat~~q~~v 90 (139)
T KOG4353|consen 15 AAEEFVNVYYSSMDKRRRGIGRLYLDNATLV-WNGNPVSGTE---SLSEFFNMLPSSEFQINDLDCQPVHDQATGSQTTV 90 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhccceEE-EcCCcchhHH---HHHHHHHhCCCccccccccccccchhhcccccceE
Confidence 5789999999999999999999999998776 8999877665 457788889999999999999997753 59
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeeeCCeEE----EEcceEEeccC
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYF----VLNDIFHFLDE 838 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~----v~nd~fr~~~~ 838 (1167)
||+|+|.|+.+|. ..|.|.|||.|..+...|- |.+|||||.|-
T Consensus 91 LvvvsGtVkFdG~-k~r~F~qt~ll~~e~~~~k~~~~v~Sd~fr~~d~ 137 (139)
T KOG4353|consen 91 LVVVSGTVKFDGN-KQRVFNQTFLLTAEDPPFKTVWKVASDCFRFQDW 137 (139)
T ss_pred EEEEeeeEEEcCC-ccccccceeEEeecCCccchhhhhhhhhhhhhhc
Confidence 9999999999997 7899999999999987777 99999999873
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.5e-16 Score=188.89 Aligned_cols=538 Identities=12% Similarity=0.039 Sum_probs=373.2
Q ss_pred cCCcccccCCCCcccCCCCCCCcc-CCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhh-hhhhHHHH
Q 001064 41 MNGNVVNEAGNATSTENGTSLGIE-SGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKL-AQDNIVKI 118 (1167)
Q Consensus 41 ~~g~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~-~~~~~~~a 118 (1167)
.-||+-.|+.-|.++++..|.-.+ ..|-++--+.+-+..+.|+..+.+++++||.++.+...|+.+.... ....+.++
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 479999999999998777776553 3566666666668899999999999999999999999998876542 13567889
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001064 119 RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV---DIWLHYCIFAINTYGDPETIRRLFERGL 195 (1167)
Q Consensus 119 r~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~---~lw~~ya~~~~~~~~~~~~Ar~~feral 195 (1167)
...+.++...+|.|+.+...++.++.-.+++..|..+.+-++...-... +-.+..++.+. ..|++++|-..|..++
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998652222 22555566666 6799999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC-CCcccc---------------
Q 001064 196 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR-PLSELR--------------- 259 (1167)
Q Consensus 196 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~-~~~~~~--------------- 259 (1167)
+..+.++. .-....+.+.+..|+++.+...|+++++..+.+++.+..+.+.+.... ......
T Consensus 335 k~~~d~~~--l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~ 412 (1018)
T KOG2002|consen 335 KADNDNFV--LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV 412 (1018)
T ss_pred ccCCCCcc--ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc
Confidence 97766632 122333444444899999999999999988888777766655554331 000000
Q ss_pred cHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001064 260 TAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAI 339 (1167)
Q Consensus 260 ~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al 339 (1167)
..+....++ .+++.. +....+..+. ..++........ .. -.++.-.+.++...+.+.+|...|..++
T Consensus 413 d~~a~l~la-ql~e~~-d~~~sL~~~~-----~A~d~L~~~~~~--ip----~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 413 DSEAWLELA-QLLEQT-DPWASLDAYG-----NALDILESKGKQ--IP----PEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred cHHHHHHHH-HHHHhc-ChHHHHHHHH-----HHHHHHHHcCCC--CC----HHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 000000000 011100 0000000000 000000000000 00 1123333456777899999999999998
Q ss_pred cCCCcccCCCC--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001064 340 RRPYFHVKPLS--VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHV 417 (1167)
Q Consensus 340 ~r~~~~v~pld--~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~ 417 (1167)
.+-.--..+-. ..++..-.+++.+++..++++.|...|..++..+|.|.+.+++++.+....+...+|...+..++.+
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 74100000001 1223345666788899999999999999999999999999999997666778899999999999998
Q ss_pred hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHHH------------HcCCHHHHHHHHHHH
Q 001064 418 FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANMER------------RLGNLEDAFSLYEQA 484 (1167)
Q Consensus 418 ~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e~------------r~g~~e~A~~~~~kA 484 (1167)
. ..+|.+|-+++.++....++.-|.+-|+.++.+..-. +.-..+.+++++. ..+.+++|+.+|.++
T Consensus 560 d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 560 D-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred c-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 7 7899999999999988888888888666654332222 3334445555432 234578888888888
Q ss_pred HHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 485 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 485 l~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
|..+|.+ -......|-++.. .|++.+|+.||.+..+..-+...+|.+.++....++. .-.+-+.|+.++.
T Consensus 639 L~~dpkN------~yAANGIgiVLA~-kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q---y~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 639 LRNDPKN------MYAANGIGIVLAE-KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ---YRLAIQMYENCLK 708 (1018)
T ss_pred HhcCcch------hhhccchhhhhhh-ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 8888643 1223556777666 8999999999999998877777888877776665543 4456777888888
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 565 SNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 565 ~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
.+-.. .+.+++.....-.-..|....+++...+...+.|..
T Consensus 709 kf~~~-------~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 709 KFYKK-------NRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred Hhccc-------CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 75422 234677777777777888999999999988888865
No 37
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=8.6e-16 Score=181.74 Aligned_cols=131 Identities=18% Similarity=0.095 Sum_probs=93.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
|..++..+.+.|++++|+.+|++++...|.....|+.++.++...|++++|..+|++++...+.....++..++..+...
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 34445555667788888888888888777777788888887777888888888888887765322345566667777777
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
|++++|...++++ .+..|+.. .+..++.++.+.|++++|+.+|+++++..|
T Consensus 263 g~~~~A~~~l~~~-~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 263 GDEAEGLEFLRRA-LEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred CCHHHHHHHHHHH-HHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 7777777777776 55667653 336677777777777777777777777764
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=1e-14 Score=172.69 Aligned_cols=361 Identities=17% Similarity=0.141 Sum_probs=251.1
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
|+++.|+..+..+|+++|.++.+|+.|+.+++.. |+++++....-.+-.++|.+.+.|+.++++-.++|+++.|+-+|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 8999999999999999999999999999999984 79999999998999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC-CC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD-YL-SFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d-~~-s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
.|+++..|.+.++...++.++. ..|+...|...|.+++...|.. +. -..+-..++.+....++-++|.+++..++..
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~-~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQ-KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHH-HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999998 6799999999999999988721 11 1122333444444444446666666666551
Q ss_pred --chhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001064 235 --PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 312 (1167)
Q Consensus 235 --p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~ 312 (1167)
.....+.+.
T Consensus 310 ~~~~~~~ed~n--------------------------------------------------------------------- 320 (895)
T KOG2076|consen 310 EKDEASLEDLN--------------------------------------------------------------------- 320 (895)
T ss_pred ccccccccHHH---------------------------------------------------------------------
Confidence 100111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc--------------------CCCcccCCCChhhHHH-HHHHHHHHHHcCChH
Q 001064 313 KYIAVREEMYKKAKEFDSKIIGFETAIR--------------------RPYFHVKPLSVTELEN-WHNYLDFIERDGDFN 371 (1167)
Q Consensus 313 ~~i~~~~~~y~~~~~~~~a~~~~e~al~--------------------r~~~~v~pld~~~~~~-W~~y~~~~e~~g~~~ 371 (1167)
+...+|.+.+.++.++....+... .+.+.++-.-+..+.+ ......+-++.....
T Consensus 321 ----i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~ 396 (895)
T KOG2076|consen 321 ----ILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELL 396 (895)
T ss_pred ----HHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchH
Confidence 111112222222222211111110 0011111111222333 111111222333333
Q ss_pred HHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 372 KVVKLYERCLIAC---ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 448 (1167)
Q Consensus 372 ~a~~~yeral~~~---p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 448 (1167)
+++.. .....+ ....++++..+..|...|.+.+|+..|..++....-++.-+|+..|.++...|.+++|...|++
T Consensus 397 e~ll~--~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 397 EALLH--FLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred HHHHH--HHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 33222 222221 3456799999999999999999999999999876556778999999999999999999999999
Q ss_pred HhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC---CCccCchHHHHHHHHHHHHHHhCCHHH
Q 001064 449 VHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG---KEHSQTLPMLYAQYSRFLHLVSRNAEK 517 (1167)
Q Consensus 449 a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~---~~~~~~~~~l~~~~a~~~~~~~g~~~~ 517 (1167)
+ +.+.|++.++.+.++.++.++|+.++|.+.++..+.-++. .+.+...-.+..++..++.. .|+.++
T Consensus 475 v-l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~-~gk~E~ 544 (895)
T KOG2076|consen 475 V-LILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ-VGKREE 544 (895)
T ss_pred H-HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH-hhhHHH
Confidence 8 7889999999999999999999999999998886632211 11122222356777777766 777776
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.75 E-value=3.7e-15 Score=176.39 Aligned_cols=309 Identities=15% Similarity=0.126 Sum_probs=228.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHH
Q 001064 136 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY-LSFPLWDKYIEY 214 (1167)
Q Consensus 136 W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~-~s~~lw~~y~~~ 214 (1167)
++..+..+...|++++|+.+|++++...|.+..+|...+.++. ..|++++|..+|++++....... .....|..++.
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~- 115 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFR-RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ- 115 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-
Confidence 4444666778889999999999999998988888888888887 67888888888888776211100 00011222222
Q ss_pred HHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccc
Q 001064 215 EYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 294 (1167)
Q Consensus 215 e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~ 294 (1167)
T Consensus 116 -------------------------------------------------------------------------------- 115 (389)
T PRK11788 116 -------------------------------------------------------------------------------- 115 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHH
Q 001064 295 EQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVV 374 (1167)
Q Consensus 295 e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~ 374 (1167)
+|...+++++|+..|+++++ .++.....+..++..+.+.|++++|+
T Consensus 116 --------------------------~~~~~g~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 116 --------------------------DYLKAGLLDRAEELFLQLVD--------EGDFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred --------------------------HHHHCCCHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHHHhchHHHHH
Confidence 33444555566666666665 34444566777777777888888888
Q ss_pred HHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 375 KLYERCLIACANYP-----EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 375 ~~yeral~~~p~~~-----~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
.+|++++...+... .+|..++..+...|++++|..+|+++++.. |+....++.++.++.+.|++++|..+|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888887766542 356778888888999999999999999987 788889999999999999999999999998
Q ss_pred hhhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 450 HTETSPGL-LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 450 ~~~~~P~~-~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
.+.+|.+ ..++...+.++.+.|++++|..+++++++..|+. .++..++.++.. .|++++|+.+|+++++.
T Consensus 241 -~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-------~~~~~la~~~~~-~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 241 -EEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-------DLLLALAQLLEE-QEGPEAAQALLREQLRR 311 (389)
T ss_pred -HHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHH-hCCHHHHHHHHHHHHHh
Confidence 6667776 4567888889999999999999999999987631 244678888766 99999999999999999
Q ss_pred cCCCHHHHHHHHHhHhhC--CC-hhHHHHHHHHHHHHhhcCCCCC
Q 001064 529 VQLSKPLLEALIHFESIQ--SS-PKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 529 ~p~~~~l~~~~~~~e~~~--~~-~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.|++..+..-+..+.... +. .+.++.+++.+++.+...|++.
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 999886653333322111 12 1234566777777777777654
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.7e-15 Score=162.52 Aligned_cols=365 Identities=12% Similarity=0.124 Sum_probs=253.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHH---HHH
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH---YCI 175 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~---ya~ 175 (1167)
..+..|.++.+ .+.+.+|++.|-..+..+|.+-.+|+.+.++... .+.+ ...+...|.+ ..|.. +..
T Consensus 166 llYL~Gvv~k~--~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~~----~~l~~~l~~~-~h~M~~~F~~~ 235 (559)
T KOG1155|consen 166 LLYLYGVVLKE--LGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEIL----SILVVGLPSD-MHWMKKFFLKK 235 (559)
T ss_pred HHHHHHHHHHh--hchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHHH----HHHHhcCccc-chHHHHHHHHH
Confidence 33445555554 4788899999999999999998888888776633 2222 2222222211 33432 222
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHH--HhcC
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF--AASR 253 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~--~~~~ 253 (1167)
.+. .....++++.-+++.+.. |. +.+.-|-..-+...-.+.+++.|..+|+.+++.+|..++.+- .|... +.+
T Consensus 236 a~~-el~q~~e~~~k~e~l~~~-gf-~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmd-lySN~LYv~~- 310 (559)
T KOG1155|consen 236 AYQ-ELHQHEEALQKKERLSSV-GF-PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMD-LYSNVLYVKN- 310 (559)
T ss_pred HHH-HHHHHHHHHHHHHHHHhc-cC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHH-HHhHHHHHHh-
Confidence 222 234678888888888873 32 123344444444555667899999999999998765443221 11110 000
Q ss_pred CCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 254 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKII 333 (1167)
Q Consensus 254 ~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~ 333 (1167)
.....+.++..++.. .+.. |. -..+-+..|.-.++-++|+.
T Consensus 311 ------~~skLs~LA~~v~~i-dKyR-----------~E---------------------TCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 311 ------DKSKLSYLAQNVSNI-DKYR-----------PE---------------------TCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred ------hhHHHHHHHHHHHHh-ccCC-----------cc---------------------ceeeehhHHHHHHhHHHHHH
Confidence 001111111111110 0000 00 00111335666778899999
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
.|.++|+ +||.-+.+|...+.=+...++...|+..|++|+..||.+..+|+.+++.++..+-..=|+-.|++
T Consensus 352 YFkRALk--------LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 352 YFKRALK--------LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHh--------cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 9999999 99999999999998777888999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC-CC
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG-KE 492 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~-~~ 492 (1167)
|++.- |+++.+|..++.++++.+++++|++.|.++ +...-.+..++.+++.++.++++..+|..+|++.++...- ..
T Consensus 424 A~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykra-i~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~ 501 (559)
T KOG1155|consen 424 ALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRA-ILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE 501 (559)
T ss_pred HHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHH-HhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 99976 899999999999999999999999999998 5556556789999999999999999999999999994410 01
Q ss_pred ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 493 HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 493 ~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
..+....+-+-++.++.+ .+++++|-.+..+++..
T Consensus 502 ~~~~t~ka~~fLA~~f~k-~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 502 IDDETIKARLFLAEYFKK-MKDFDEASYYATLVLKG 536 (559)
T ss_pred cchHHHHHHHHHHHHHHh-hcchHHHHHHHHHHhcC
Confidence 112222334457777666 88999998877766543
No 41
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.73 E-value=2.4e-13 Score=174.73 Aligned_cols=419 Identities=10% Similarity=0.058 Sum_probs=294.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 82 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEF--PLCYGYWKKYADHEARVGSMDKVVEVYERA 159 (1167)
Q Consensus 82 a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~--P~~~~~W~~~a~~e~~~~~~e~A~~l~era 159 (1167)
+.......+...+. ...+..+...+-+ .|++.+|+++|+.+.... +.+.-++..++..+.+.+..+.|..+|+.+
T Consensus 356 ~~~~~~~~~~~~~~-~~~~~~~y~~l~r--~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 356 SLAAYNGGVSGKRK-SPEYIDAYNRLLR--DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hHHHhccccCCCCC-chHHHHHHHHHHH--CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 33444444443333 3334434443434 378999999999998875 344455666778888999999999999877
Q ss_pred HhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh-h
Q 001064 160 VQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ-Q 238 (1167)
Q Consensus 160 L~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~-~ 238 (1167)
.. .+...|...+..+. ..++++.|+++|+++++ .|..+ +...|..++....+.|+++.|..+|+++.+.... +
T Consensus 433 ~~---pd~~Tyn~LL~a~~-k~g~~e~A~~lf~~M~~-~Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 433 RN---PTLSTFNMLMSVCA-SSQDIDGALRVLRLVQE-AGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred CC---CCHHHHHHHHHHHH-hCcCHHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 65 46677888888777 67999999999999887 33332 3578999999999999999999999888654211 1
Q ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHH
Q 001064 239 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 318 (1167)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~ 318 (1167)
. ..|+. +
T Consensus 507 v-vTyna--------------------------------------------------------------------L---- 513 (1060)
T PLN03218 507 V-HTFGA--------------------------------------------------------------------L---- 513 (1060)
T ss_pred H-HHHHH--------------------------------------------------------------------H----
Confidence 1 11111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---cCCCHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA---CANYPEYWIRYV 395 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~---~p~~~~~w~~ya 395 (1167)
-..|.+.+++++|+..|++.... . +.| +...|..++..+-+.|++++|..+|++.... ..-+...|..++
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~---G---v~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSK---N---VKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHc---C---CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 12345556667777777776542 1 222 3567888888888888999999998888753 122345777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-cCCChHHHHHHHHHHHHHcCCH
Q 001064 396 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE-TSPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 396 ~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-~~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
..+.+.|++++|..+|++..+...+.+...|......+.+.|++++|+.+|++.... +.|+ ...|..++..+.+.|++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCH
Confidence 888888899999999988887654556678888888888889999999998886322 2454 55777788888888999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--cCCCHHHHHHHHHhHhhCCChhHH
Q 001064 475 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH--VQLSKPLLEALIHFESIQSSPKQI 552 (1167)
Q Consensus 475 e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~--~p~~~~l~~~~~~~e~~~~~~~~~ 552 (1167)
++|..+|++.++... ......|..++..+.+ .|++++|+++|++..+. .| +...|..++......+. +
T Consensus 666 eeA~~l~~eM~k~G~-----~pd~~tynsLI~ay~k-~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~---~ 735 (1060)
T PLN03218 666 DKAFEILQDARKQGI-----KLGTVSYSSLMGACSN-AKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQ---L 735 (1060)
T ss_pred HHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCC---H
Confidence 999999888877542 1124567777777666 88899999999887653 34 45667777766666555 5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 553 DFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 553 ~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
+.+.++|+++...+-... ...+...+.-..+.|+++.+.++..++.+.
T Consensus 736 eeAlelf~eM~~~Gi~Pd--------~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPN--------TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 667888887765432211 236777777788888888888888888765
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=2.3e-13 Score=170.36 Aligned_cols=457 Identities=12% Similarity=-0.023 Sum_probs=292.3
Q ss_pred HhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 91 KANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 91 ~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
-..|...+.-+..+.+..+ +|++..|+..|+++++.+|.+......++.++...|+.++|+.++++|+.-.|.+....
T Consensus 28 ~~~p~~~~~~y~~aii~~r--~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRAR--AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred ccCccchhHHHHHHHHHHh--CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 4567777776666665555 58999999999999999999964444999999999999999999999994444444444
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFA 250 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~ 250 (1167)
...+..+. ..|++++|+.+|+++++..|.+ ..++...+......++.+.|+..+++++...+.+...+.. .+.
T Consensus 106 lalA~ly~-~~gdyd~Aiely~kaL~~dP~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l---ayL 178 (822)
T PRK14574 106 ASAARAYR-NEKRWDQALALWQSSLKKDPTN---PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL---SYL 178 (822)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH---HHH
Confidence 44466777 6799999999999999966554 6777777787888899999999999999987664332222 221
Q ss_pred hcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 251 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDS 330 (1167)
Q Consensus 251 ~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~ 330 (1167)
... .....++....+.+... .+.+.+.+.+++... ...+-...
T Consensus 179 ~~~----~~~~~~AL~~~ekll~~-----------------------------~P~n~e~~~~~~~~l----~~~~~~~~ 221 (822)
T PRK14574 179 NRA----TDRNYDALQASSEAVRL-----------------------------APTSEEVLKNHLEIL----QRNRIVEP 221 (822)
T ss_pred HHh----cchHHHHHHHHHHHHHh-----------------------------CCCCHHHHHHHHHHH----HHcCCcHH
Confidence 110 00011111111111110 111222222232221 11221222
Q ss_pred HHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHH--Hc---------C---ChHHHHHHHHHHHHhcCCCH---H----
Q 001064 331 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE--RD---------G---DFNKVVKLYERCLIACANYP---E---- 389 (1167)
Q Consensus 331 a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e--~~---------g---~~~~a~~~yeral~~~p~~~---~---- 389 (1167)
|. +.+-.+|-+ ..+. -..|..+-..-+ +. . -.++++.-+++.+...+..| .
T Consensus 222 a~---~l~~~~p~~----f~~~-~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~ 293 (822)
T PRK14574 222 AL---RLAKENPNL----VSAE-HYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQR 293 (822)
T ss_pred HH---HHHHhCccc----cCHH-HHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHH
Confidence 22 111111100 1111 122433322211 11 1 23567888888887444333 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-----CCChHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET-----SPGLLEAIIKH 464 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~-----~P~~~~~~~~~ 464 (1167)
+.+.....|...+++.+++..|+.......+--.-+....|+.+...+..++|..+|.+++..- .|........+
T Consensus 294 ~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L 373 (822)
T PRK14574 294 ARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDL 373 (822)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHH
Confidence 3445556677789999999999877643211122355566788888999999999999984321 12233323444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhC---------CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHH
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKG---------KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPL 535 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~---------~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l 535 (1167)
...+...+++++|..++++.....|- +...++........+..+.. .|++.+|.+++++.+...|.|..|
T Consensus 374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~-~gdl~~Ae~~le~l~~~aP~n~~l 452 (822)
T PRK14574 374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA-LNDLPTAQKKLEDLSSTAPANQNL 452 (822)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHH
Confidence 45555789999999999999986551 01112333444444555444 899999999999999999999999
Q ss_pred HHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCC
Q 001064 536 LEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRS 614 (1167)
Q Consensus 536 ~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~~~ 614 (1167)
+..++.++...+.+.+ +..++++++...|++.. +--....-....|+...+.++.+.+.+++|+..+
T Consensus 453 ~~~~A~v~~~Rg~p~~---A~~~~k~a~~l~P~~~~---------~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 453 RIALASIYLARDLPRK---AEQELKAVESLAPRSLI---------LERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHhcCCHHH---HHHHHHHHhhhCCccHH---------HHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 9999999999988554 77888888777766542 1222222333448899999999999999998753
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=2.9e-17 Score=184.88 Aligned_cols=268 Identities=18% Similarity=0.191 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGV--TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKY 211 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~--P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y 211 (1167)
...+.+|.++.+.|++++|.+++++.+... |.+.++|..++.+.. ..++.+.|+..|++++..... +...+..+
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-~~~~~~~A~~ay~~l~~~~~~---~~~~~~~l 84 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW-SLGDYDEAIEAYEKLLASDKA---NPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc---cccccccc
Confidence 344566666666666666666665554443 566666666666665 456666666666666653222 33344455
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCC
Q 001064 212 IEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQP 291 (1167)
Q Consensus 212 ~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p 291 (1167)
+.+ ...+++++|..+++++++.... ..++..
T Consensus 85 ~~l-~~~~~~~~A~~~~~~~~~~~~~--~~~l~~---------------------------------------------- 115 (280)
T PF13429_consen 85 IQL-LQDGDPEEALKLAEKAYERDGD--PRYLLS---------------------------------------------- 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc-cccccccccccccccccccccc--cchhhH----------------------------------------------
Confidence 554 3445556665555544332211 000100
Q ss_pred ccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChH
Q 001064 292 DATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFN 371 (1167)
Q Consensus 292 ~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~ 371 (1167)
+ ..+|...+++.++...++++...+ ..+.+...|..++.++.+.|+.+
T Consensus 116 ----------------------~----l~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 116 ----------------------A----LQLYYRLGDYDEAEELLEKLEELP------AAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---------T-HHHHHHHHHHHHHCCHHH
T ss_pred ----------------------H----HHHHHHHhHHHHHHHHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCCHH
Confidence 0 011223333444444444433210 12345678999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001064 372 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 451 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 451 (1167)
+|+.+|+++|...|.+++++..++.++...|+.++++.++.+..... |.++.+|..++..+...|++++|+..|+++ .
T Consensus 164 ~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~-~ 241 (280)
T PF13429_consen 164 KALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA-L 241 (280)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc-c
Confidence 99999999999999999999999999988999999999999888876 788999999999999999999999999998 7
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 452 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 452 ~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
+.+|+++.++..+++++...|+.++|..++++++...
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT-------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999998753
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.7e-15 Score=172.96 Aligned_cols=302 Identities=14% Similarity=0.090 Sum_probs=251.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY 181 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~ 181 (1167)
.++..+..+..=+-.+|..+|++.-...++.......++..+..+.+|++|+++|+.+=+..|..++---.|-..+. .+
T Consensus 322 ~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW-HL 400 (638)
T KOG1126|consen 322 GLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW-HL 400 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH-HH
Confidence 34444444333356789999999778888888777889999999999999999999999999876655555555544 22
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccH
Q 001064 182 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 261 (1167)
Q Consensus 182 ~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1167)
.+ +-+...+-+-| +-.++.++.-|-..+.+.--|++.+.|++.|+|++++++...-.+-
T Consensus 401 q~-~v~Ls~Laq~L--i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayT------------------ 459 (638)
T KOG1126|consen 401 QD-EVALSYLAQDL--IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYT------------------ 459 (638)
T ss_pred Hh-hHHHHHHHHHH--HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhh------------------
Confidence 22 22334444433 2367779999999999999999999999999999999775211111
Q ss_pred HHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001064 262 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRR 341 (1167)
Q Consensus 262 ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r 341 (1167)
+ ++.-+..++++++|...|..+|.
T Consensus 460 ----------------------------------------------------L---lGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 460 ----------------------------------------------------L---LGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred ----------------------------------------------------h---cCChhhhhHHHHhHHHHHHhhhc-
Confidence 0 01113445677888888999998
Q ss_pred CCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc
Q 001064 342 PYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 421 (1167)
Q Consensus 342 ~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~ 421 (1167)
.++..+.+|.-++-.+.++++++.|...|++|+.++|.+.-+...++.++...|+.|+|+.+|++|+.+. |+
T Consensus 484 -------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~k 555 (638)
T KOG1126|consen 484 -------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PK 555 (638)
T ss_pred -------CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999987 88
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 422 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 422 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
++.-.+..+.++...+++++|+..++.+ .++.|+...++...+.++.++|+.+.|...|.-|+.++|.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeL-k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEEL-KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHH-HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999999999999999999999997 8999999999999999999999999999999999999975
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=4.2e-14 Score=167.55 Aligned_cols=384 Identities=12% Similarity=0.092 Sum_probs=269.5
Q ss_pred ccccccCC--cCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Q 001064 33 SQAAGYNS--MNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKL 110 (1167)
Q Consensus 33 ~~~~~~~~--~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~ 110 (1167)
.|||.-.. +.|+.+.|.+-+..|+..+|...+..-+++-++.+.|+..++....-.+-.+||.|.+.|..++.+..++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 45555444 6799999999999999999999999999999999989999999988899999999999999999999984
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHhhcCCHH
Q 001064 111 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS-----VDIWLHYCIFAINTYGDPE 185 (1167)
Q Consensus 111 ~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s-----~~lw~~ya~~~~~~~~~~~ 185 (1167)
+++++|+-+|.++|...|.+..+....+.++.++|+..+|...|.+++...|.. .++-..++++.+ +.++-+
T Consensus 221 --~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~-~~~~~e 297 (895)
T KOG2076|consen 221 --GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI-THNERE 297 (895)
T ss_pred --ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH-HhhHHH
Confidence 899999999999999999999999999999999999999999999999999843 234445566777 456669
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHH--HHHH-h-cCCCcccccH
Q 001064 186 TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF--KEFA-A-SRPLSELRTA 261 (1167)
Q Consensus 186 ~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~--~~~~-~-~~~~~~~~~~ 261 (1167)
.|.+.++-++. .+.+-.+..-.+.|+.+.+....++.+.....+.......+-+.=|.-. .... + ......-...
T Consensus 298 ~a~~~le~~~s-~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 298 RAAKALEGALS-KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHh-hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 99999999998 3333345556678888888888888886665555442111111111000 0000 0 0000000000
Q ss_pred HHHHHHHHHh-hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001064 262 EEVDAAAVAV-AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIR 340 (1167)
Q Consensus 262 ee~~~~~~~~-~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~ 340 (1167)
+--. .+..+ ...+.+... +..+.- ........-.+.+. ++.-..+.|...+++.+|+..|..++.
T Consensus 377 ~l~v-~rl~icL~~L~~~e~----------~e~ll~--~l~~~n~~~~d~~d-L~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKEREL----------LEALLH--FLVEDNVWVSDDVD-LYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cchh-HhHhhhhhcccccch----------HHHHHH--HHHHhcCChhhhHH-HHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 0000 00000 000000000 000000 00000011122222 333335678899999999999999987
Q ss_pred CCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-
Q 001064 341 RPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV- 419 (1167)
Q Consensus 341 r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~- 419 (1167)
++- -.+..+|...+.++...|.+++|+..|+++|...|.+.++.+.++.++..+|+.|+|..+++..+.-..
T Consensus 443 ~~~-------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 443 REG-------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred Ccc-------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 421 233678999999999999999999999999999999999999999999999999999999887541110
Q ss_pred -------ccChHHHHHHHHHHHHcCCHHH
Q 001064 420 -------KRLPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 420 -------p~~~~l~~~~a~~~e~~g~~~~ 441 (1167)
+....+.+...+++.+.|+.++
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 1234566677888888888776
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=2.4e-16 Score=156.12 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=76.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+++|||+|||+++|+++|+++|++||.|+++.| +.++.+++++|||||+|.+.++|++||+. ++..|+|+.|+|+++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKV-IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4689999999999999999999999999999886 66888999999999999999999999976 899999999999998
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+.++.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87544
No 47
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.70 E-value=7e-13 Score=170.40 Aligned_cols=412 Identities=10% Similarity=0.075 Sum_probs=297.5
Q ss_pred ccccCCCCchHHHHHHHHHHhCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q 001064 72 ELVDGSAMSGEEDRLWNIVKANSSD--FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 149 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~nP~d--~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~ 149 (1167)
.+...|++..+++.|+.+.+.+... .-.+..++..+.+ .+.+..|..+|+.+.. | +...|..++..+.+.+++
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~--~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~ 453 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK--QRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDI 453 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH--CCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCH
Confidence 4444589999999999998887543 3334456666665 3788999999888765 6 457899999999999999
Q ss_pred HHHHHHHHHHHhcc-CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH
Q 001064 150 DKVVEVYERAVQGV-TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY 228 (1167)
Q Consensus 150 e~A~~l~eraL~~~-P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy 228 (1167)
+.|.++|+++++.. ..+...|...+..+. ..|+.+.|+++|+++... |..+ +...|..+|....+.|++++|..+|
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~-k~G~vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCA-KSGKVDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999998753 356788888888888 689999999999999873 3322 3578999999999999999999999
Q ss_pred HHHHhc--chhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcc
Q 001064 229 TRILEN--PIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLT 306 (1167)
Q Consensus 229 ~r~l~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~ 306 (1167)
.++... .++ ...+-.....+..... .+++..+...+... ..+ ..|
T Consensus 531 ~~M~~~Gv~PD-~vTYnsLI~a~~k~G~------~deA~~lf~eM~~~---~~g--------i~P--------------- 577 (1060)
T PLN03218 531 GIMRSKNVKPD-RVVFNALISACGQSGA------VDRAFDVLAEMKAE---THP--------IDP--------------- 577 (1060)
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHHHCCC------HHHHHHHHHHHHHh---cCC--------CCC---------------
Confidence 999874 222 2222222222222211 12222111111000 000 001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cC
Q 001064 307 EAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-CA 385 (1167)
Q Consensus 307 ~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~-~p 385 (1167)
+... ....-..|-+.+++++|+..|+++.++. + +.+...|..++..+.+.|++++|+.+|++.... +.
T Consensus 578 D~vT----ynaLI~ay~k~G~ldeA~elf~~M~e~g------i-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 578 DHIT----VGALMKACANAGQVDRAKEVYQMIHEYN------I-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred cHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHcC------C-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 1111 1222345788899999999999998731 1 234578999999999999999999999998876 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHH
Q 001064 386 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKH 464 (1167)
Q Consensus 386 ~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~ 464 (1167)
-+...|..++..+.+.|++++|..++++..+...+-+...|..+...+.+.|++++|+.+|+.+.. .+.| +...|..+
T Consensus 647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~L 725 (1060)
T PLN03218 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNAL 725 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Confidence 345688888999999999999999999998865455677888899999999999999999998621 2456 45679999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc-CCCHHHHHHHHHh
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV-QLSKPLLEALIHF 542 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~-p~~~~l~~~~~~~ 542 (1167)
+..+.+.|++++|..+|++.....- .++ ...|..+...+.+ .|++++|+++|.+.++.- ..+...+..++.+
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi----~Pd-~~Ty~sLL~a~~k-~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGL----CPN-TITYSILLVASER-KDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC----CCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999876431 122 3356666666555 999999999999998853 2234445444433
No 48
>PLN03077 Protein ECB2; Provisional
Probab=99.70 E-value=4.7e-14 Score=183.53 Aligned_cols=452 Identities=10% Similarity=0.027 Sum_probs=329.0
Q ss_pred cccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCC
Q 001064 71 QELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAE--FPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 71 ~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~--~P~~~~~W~~~a~~e~~~~~ 148 (1167)
..+...|+++.|...|+.... .|...|..|+..+-+ .++.++|..+|++++.. .|+. ..+..++..+.+.++
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~--~g~~~eAl~lf~~M~~~g~~Pd~-~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFE--NGECLEGLELFFTMRELSVDPDL-MTITSVISACELLGD 303 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCC
Confidence 344455888888888877653 356789999998887 47899999999999875 5655 556777888889999
Q ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHH
Q 001064 149 MDKVVEVYERAVQGV-TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMI 227 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~-P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~i 227 (1167)
.+.+++++..+++.- ..+..+|..++..+. ..|++++|+++|+++.. .| ...|...+.-..+.|++++|..+
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~vf~~m~~---~d---~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYL-SLGSWGEAEKVFSRMET---KD---AVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHH-hcCCHHHHHHHHhhCCC---CC---eeeHHHHHHHHHhCCCHHHHHHH
Confidence 999999999888743 346788888888888 67999999999998753 22 35689999888889999999999
Q ss_pred HHHHHhc--chh--hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcccc
Q 001064 228 YTRILEN--PIQ--QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 228 y~r~l~~--p~~--~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
|+++.+. .|+ .+..+...+ ..... .+++..+ +....+... .
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~---~~~g~------~~~a~~l----~~~~~~~g~---------~------------- 421 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSAC---ACLGD------LDVGVKL----HELAERKGL---------I------------- 421 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHH---hccch------HHHHHHH----HHHHHHhCC---------C-------------
Confidence 9988764 222 222222222 11111 1111111 110000000 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
.+.. .....-..|.+.+++++|+..|++..+ .+...|..++.-+.+.|+.++|+.+|++.+..
T Consensus 422 --~~~~----~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 422 --SYVV----VANALIEMYSKCKCIDKALEVFHNIPE-----------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred --cchH----HHHHHHHHHHHcCCHHHHHHHHHhCCC-----------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 0000 222334568889999999999998654 23457999999999999999999999999876
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
..-+...+..+...+...|+.+.+..++..+++.-...+..+...+.+++.+.|++++|+.+|+.. +.+...|..
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~ 559 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNI 559 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHH
Confidence 555666777777778889999999999999887654445566667788899999999999999874 346778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC--CHHHHHHHHH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL--SKPLLEALIH 541 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~--~~~l~~~~~~ 541 (1167)
++..+.+.|+.++|..+|++.++.... |+ ...|..+.....+ .|++++|+++|+...+..+. +...|..++.
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~----Pd-~~T~~~ll~a~~~-~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVN----PD-EVTFISLLCACSR-SGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC----CC-cccHHHHHHHHhh-cChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999998874321 11 1234444444344 89999999999999854332 3356667777
Q ss_pred hHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 542 FESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 542 ~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+....|. ++.+..++++.- ..|+ ..+|...+.-...+|+.+..+.+.+++.++.|..
T Consensus 634 ~l~r~G~---~~eA~~~~~~m~-~~pd----------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 634 LLGRAGK---LTEAYNFINKMP-ITPD----------PAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHhCCC---HHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 7777666 666788888752 1221 2589999999999999999999999999988764
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2e-13 Score=151.28 Aligned_cols=430 Identities=11% Similarity=0.038 Sum_probs=281.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001064 135 YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEY 214 (1167)
Q Consensus 135 ~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~ 214 (1167)
..+..++.+.+.++|++|++.|..++.++|+.+-.+.+.+-.+. ..|+++++.+--.++|...|.. ......-+.-
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~-~lgd~~~Vied~TkALEl~P~Y---~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYE-SLGDWEKVIEDCTKALELNPDY---VKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHH-HHhhHHHHHHHHHHHhhcCcHH---HHHHHHHHHH
Confidence 35667888999999999999999999999987666767766666 6899999999999999854432 2333333333
Q ss_pred HHHhhhHHHHHHHHHHHHhc---chhh----HHHHHHHHHHHHhcCC----CcccccHHHHHHHHHHhhhCCCccchhhh
Q 001064 215 EYMQQEWSRVAMIYTRILEN---PIQQ----LDRYFSSFKEFAASRP----LSELRTAEEVDAAAVAVAAAPSETGAEVK 283 (1167)
Q Consensus 215 e~~~~~~~~A~~iy~r~l~~---p~~~----~~~~~~~~~~~~~~~~----~~~~~~~ee~~~~~~~~~~~~~e~~~~~~ 283 (1167)
.+..|++++|..=..-..-+ .... .++..+.--....... ....+..-..+. -++..+.
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~---syf~sF~------- 262 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA---SYFGSFH------- 262 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH---HHHhhcc-------
Confidence 44556666663222111111 0011 1222221111000000 000011000000 0001000
Q ss_pred ccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCC--cccCCCChhh---HHHH
Q 001064 284 ANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK-AKEFDSKIIGFETAIRRPY--FHVKPLSVTE---LENW 357 (1167)
Q Consensus 284 ~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~-~~~~~~a~~~~e~al~r~~--~~v~pld~~~---~~~W 357 (1167)
.+.... ...........+...+ +.+|.. ...|..+...+.+.+..-. .+++.+|..- ....
T Consensus 263 --------~~~~~~--~~~~~~ksDa~l~~~l---~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al 329 (606)
T KOG0547|consen 263 --------ADPKPL--FDNKSDKSDAALAEAL---EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL 329 (606)
T ss_pred --------cccccc--ccCCCccchhhHHHHH---HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence 000000 0000000001111111 111111 1234444444444332100 0111122110 1112
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC
Q 001064 358 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 437 (1167)
Q Consensus 358 ~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g 437 (1167)
..-+.|..-.|+.-.+...|+.+|..+|....+++..+..+....+.++..+.|.+|..+. |.++.+|+..+.+....+
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHH
Confidence 2223444556889999999999999999999999999999998899999999999999988 899999999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHH
Q 001064 438 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 517 (1167)
Q Consensus 438 ~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~ 517 (1167)
++++|..-|+++ ++++|++.-.+++.+.++.|++.++++...|+.++..+|+ .|+.|.-++.++.. .++++.
T Consensus 409 q~e~A~aDF~Ka-i~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~------~~Evy~~fAeiLtD-qqqFd~ 480 (606)
T KOG0547|consen 409 QYEEAIADFQKA-ISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN------CPEVYNLFAEILTD-QQQFDK 480 (606)
T ss_pred HHHHHHHHHHHH-hhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CchHHHHHHHHHhh-HHhHHH
Confidence 999999999998 8999999999999999999999999999999999999974 37889999999887 889999
Q ss_pred HHHHHHHHHhhcCC------CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 001064 518 ARQILVDSLDHVQL------SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGL 591 (1167)
Q Consensus 518 Ar~i~~kal~~~p~------~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~ 591 (1167)
|.+.|.+|+++.|. +...+..-+.+... . .++++.+..|+.+|++..|.. .........|+..
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-w-k~d~~~a~~Ll~KA~e~Dpkc---------e~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-W-KEDINQAENLLRKAIELDPKC---------EQAYETLAQFELQ 549 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhc-h-hhhHHHHHHHHHHHHccCchH---------HHHHHHHHHHHHH
Confidence 99999999999998 55443332222222 1 134788999999999987643 3577888899999
Q ss_pred hCCHHHHHHHHHHHHhhhCC
Q 001064 592 FGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 592 ~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
.|+++.+..+.++...+-..
T Consensus 550 ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 99999999999998887643
No 50
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.69 E-value=1.1e-13 Score=175.97 Aligned_cols=433 Identities=11% Similarity=0.071 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc-CCCHHHHHHH
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEF--PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV-TYSVDIWLHY 173 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~--P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~-P~s~~lw~~y 173 (1167)
...|..++..+.+ .++..+|..+|+.+.... ..+...|..++..+.+.++++.++.++..+++.- ..++..+...
T Consensus 87 ~~~~~~~i~~l~~--~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 87 GVSLCSQIEKLVA--CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred ceeHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 3467777776665 378888888888887653 3355677888888888888888888888877632 2356777777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhc
Q 001064 174 CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ-QLDRYFSSFKEFAAS 252 (1167)
Q Consensus 174 a~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~-~~~~~~~~~~~~~~~ 252 (1167)
+..+. ..|+++.|+++|++... . +...|...+..+.+.|++++|..+|+++++.... +...+-.....+...
T Consensus 165 i~~y~-k~g~~~~A~~lf~~m~~---~---~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 165 LLMHV-KCGMLIDARRLFDEMPE---R---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHh-cCCCHHHHHHHHhcCCC---C---CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 77777 67888888888887754 2 2356888888888888888888888888775221 111111111111111
Q ss_pred CCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 253 RPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI 332 (1167)
Q Consensus 253 ~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~ 332 (1167)
. .+ +....+...+.. . + . .++ .. .....-..|.+.+++++|+
T Consensus 238 ~---~~---~~~~~l~~~~~~----~-g----~----~~d---------------~~----~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 238 G---SA---RAGQQLHCCVLK----T-G----V----VGD---------------TF----VSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred C---cH---HHHHHHHHHHHH----h-C----C----Ccc---------------ce----eHHHHHHHHHHCCCHHHHH
Confidence 1 00 111100000000 0 0 0 000 00 1223345688899999999
Q ss_pred HHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 333 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASGSMDLAHNAL 411 (1167)
Q Consensus 333 ~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~-~p~~~~~w~~ya~~l~~~g~~e~A~~vl 411 (1167)
..|++... .+...|..++..+.+.|+.++|+.+|++.... ..-+...+..++..+.+.|++++|..++
T Consensus 280 ~vf~~m~~-----------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 280 CVFDGMPE-----------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred HHHHhCCC-----------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 99987643 24668999999999999999999999998765 3345567888888888999999999999
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 412 ARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 412 ~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
...++.-.+.+..++..+.+++.+.|++++|+.+|++. . .| +...|..++..+.+.|+.++|..+|++.+....
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m-~--~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~-- 422 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-P--RK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGV-- 422 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-C--CC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Confidence 99988765566778888999999999999999999986 3 33 566899999999999999999999999887542
Q ss_pred CccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC--CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001064 492 EHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL--SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 569 (1167)
Q Consensus 492 ~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~--~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~ 569 (1167)
.|+ ...|..+...+.. .|++++|+++|+...+..+. +...|..++.+....|. ++.+.++|++... .
T Consensus 423 --~Pd-~~T~~~ll~a~~~-~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~---~~eA~~~~~~~~~----~ 491 (697)
T PLN03081 423 --APN-HVTFLAVLSACRY-SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL---LDEAYAMIRRAPF----K 491 (697)
T ss_pred --CCC-HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC---HHHHHHHHHHCCC----C
Confidence 122 3356666666555 89999999999999875332 23456667777666665 6667777776421 1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC
Q 001064 570 PSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 570 ~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
+. ..+|...+.....+|+.+..+++.+++.++.|.
T Consensus 492 p~-------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 492 PT-------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred CC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 21 247999999999999999999999998877765
No 51
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.67 E-value=7e-15 Score=178.93 Aligned_cols=253 Identities=16% Similarity=0.232 Sum_probs=204.7
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001064 152 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL--SFPLWDKYIEYEYMQQEWSRVAMIYT 229 (1167)
Q Consensus 152 A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~--s~~lw~~y~~~e~~~~~~~~A~~iy~ 229 (1167)
..+=|+|.|..+|++.-+|+.|..|.+ ..+++++||++++|||..+...-. -..||..|.++|...|.-+.+.++|+
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 345688999999999999999999998 688999999999999987642211 34789999999999987788889999
Q ss_pred HHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001064 230 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 309 (1167)
Q Consensus 230 r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~ 309 (1167)
|+++.-. .|.-|
T Consensus 1522 RAcqycd-----~~~V~--------------------------------------------------------------- 1533 (1710)
T KOG1070|consen 1522 RACQYCD-----AYTVH--------------------------------------------------------------- 1533 (1710)
T ss_pred HHHHhcc-----hHHHH---------------------------------------------------------------
Confidence 9865311 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--C
Q 001064 310 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN--Y 387 (1167)
Q Consensus 310 ~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~--~ 387 (1167)
..+..+|.+.+++.+|.+.|+..+++ -.+....|..|++|+.+.++-+.|+.++.|||.+.|. +
T Consensus 1534 ------~~L~~iy~k~ek~~~A~ell~~m~KK--------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1534 ------LKLLGIYEKSEKNDEADELLRLMLKK--------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred ------HHHHHHHHHhhcchhHHHHHHHHHHH--------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 11234677777778888888888873 2256789999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcCCChHH-HHHHHH
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH-TETSPGLLE-AIIKHA 465 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~-~~~~P~~~~-~~~~~a 465 (1167)
.++.-..|+++.+.|+-+.++.+|+-.+..+ |+..++|..|.+.+.++|+.+-+|.+|+|++ +.+.|.... ++-+|.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 7899999999999999999999999999988 8899999999999999999999999999983 234455544 477888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhh
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
.+|...|+-+.+..+=.+|++..
T Consensus 1679 eyEk~~Gde~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKARAKEYV 1701 (1710)
T ss_pred HHHHhcCchhhHHHHHHHHHHHH
Confidence 88888898877777777777654
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=1.9e-16 Score=178.19 Aligned_cols=264 Identities=18% Similarity=0.218 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEF--PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIF 176 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~--P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~ 176 (1167)
..+.++..+.. .+++++|.+++++.+... |++..+|..++++....++++.|+..|++++...+.++.....++.+
T Consensus 10 ~~l~~A~~~~~--~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l 87 (280)
T PF13429_consen 10 EALRLARLLYQ--RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34456666655 367788888886655444 77778888888888888888888888888887777777777777777
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCc
Q 001064 177 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 256 (1167)
Q Consensus 177 ~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~ 256 (1167)
. ..+++++|..+++++.+..+ +..+|..++......++++++..++.++...+....+
T Consensus 88 -~-~~~~~~~A~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------- 145 (280)
T PF13429_consen 88 -L-QDGDPEEALKLAEKAYERDG----DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS---------------- 145 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-----------------
T ss_pred -c-cccccccccccccccccccc----ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC----------------
Confidence 3 45777788777777766432 3466677777777777777777776665432110000
Q ss_pred ccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 257 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 336 (1167)
Q Consensus 257 ~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e 336 (1167)
..++..+..++.+.++.++|+..|+
T Consensus 146 -------------------------------------------------------~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 146 -------------------------------------------------------ARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0023334456677777788888888
Q ss_pred hhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 337 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416 (1167)
Q Consensus 337 ~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~ 416 (1167)
++|+ ++|++.+++..++.++...|+.++++.++++.....|.++.+|..++..+...|+.++|+..|++++.
T Consensus 171 ~al~--------~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 171 KALE--------LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHH--------H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHH--------cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 8887 67777788888888888888899888888888888888889999999999999999999999999998
Q ss_pred hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001064 417 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 417 ~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
.. |+++.++..+|+++.+.|+.++|..++.+++
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT----------------
T ss_pred cc-ccccccccccccccccccccccccccccccc
Confidence 77 8899999999999999999999999988874
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.1e-16 Score=153.87 Aligned_cols=130 Identities=34% Similarity=0.481 Sum_probs=95.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||||||.++.+.+|+++|.+||.|..|.+ +++. ...+||||+|++..+|+.||.. +|..++|..|+||+.+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieL--K~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIEL--KNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEe--ccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 489999999999999999999999999999664 3332 2568999999999999999988 8999999999999998
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC--------C-CCCCCCCCCCCCCCCCCCCCCCC
Q 001064 1110 PNTGSTSRGGR-RGRGRGSYQTDAPRGRFGGR--------G-LGRGSAQDGGDYNRSRGNGFYQR 1164 (1167)
Q Consensus 1110 ~~~~~~~~g~~-~g~grg~~~~~~~rg~~g~~--------~-~gr~~~~~~~~~~r~~g~g~~~~ 1164 (1167)
.-++.+.++|+ .|+||||.++++.+|+-.-| | ...++|++.+|.||..|..+|..
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfad 146 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFAD 146 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeee
Confidence 76544433332 23333322211111111111 2 13567889999999999888753
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=3.5e-13 Score=159.76 Aligned_cols=293 Identities=10% Similarity=-0.015 Sum_probs=206.9
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhcCCHHHHHH
Q 001064 111 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV-DIWLHYCIFAINTYGDPETIRR 189 (1167)
Q Consensus 111 ~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~-~lw~~ya~~~~~~~~~~~~Ar~ 189 (1167)
.+|++..|++.+.++.+..|+..-+++..++...+.|++++|.+.|+++++..|.+. .+...++.+.+ ..++++.|+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHHH
Confidence 468999999999999999998888888889999999999999999999999888874 67777888888 6799999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
.++++++..|. +..++..+.......|+|+.|..++.++++....+-..+. .
T Consensus 175 ~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~-~------------------------ 226 (409)
T TIGR00540 175 GVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA-D------------------------ 226 (409)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH-H------------------------
Confidence 99999996555 4678888888888999999998888887654211100000 0
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
.+
T Consensus 227 -----------------------------------------------l~------------------------------- 228 (409)
T TIGR00540 227 -----------------------------------------------LE------------------------------- 228 (409)
T ss_pred -----------------------------------------------HH-------------------------------
Confidence 00
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHH
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA----NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 425 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p----~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l 425 (1167)
...|..+++- +..+.....++++....| +++.+++.++..+...|+.++|.++++++++.. |++...
T Consensus 229 ----~~a~~~~l~~----~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~ 299 (409)
T TIGR00540 229 ----QKAEIGLLDE----AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAI 299 (409)
T ss_pred ----HHHHHHHHHH----HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccc
Confidence 0011111100 111112223333333333 567777777777777778888888888887776 444432
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhhhCCCccCchHH
Q 001064 426 --HLFAARFKEQNGDIDGARAAYQLVHTETSPGLL--EAIIKHANMERRLGNLEDAFSLYEQ--AIAIEKGKEHSQTLPM 499 (1167)
Q Consensus 426 --~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~--~~~~~~a~~e~r~g~~e~A~~~~~k--Al~~~~~~~~~~~~~~ 499 (1167)
...........++.+.+++.++++ ++..|+++ .+...++.++.+.|++++|++.|++ +++..|+ +.
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~-lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-------~~ 371 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQ-AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-------AN 371 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-------HH
Confidence 122222222346777888888887 67788888 7788888888888999999998884 5555542 34
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 500 LYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 500 l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
.+.+++.+++. .|+.++|+++|++++..
T Consensus 372 ~~~~La~ll~~-~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 372 DLAMAADAFDQ-AGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 56688888887 88899999999988763
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.7e-13 Score=148.67 Aligned_cols=379 Identities=12% Similarity=0.013 Sum_probs=288.2
Q ss_pred ccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHh
Q 001064 70 GQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKK---YADHEARV 146 (1167)
Q Consensus 70 ~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~---~a~~e~~~ 146 (1167)
..+...+++--++.-.+...|..-|--.+....++..--+. .+..+.--..+...|...+.|+- ++.++.-.
T Consensus 137 a~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g-----~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~ 211 (564)
T KOG1174|consen 137 ARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNG-----NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFK 211 (564)
T ss_pred HHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcc-----hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcc
Confidence 33444444445667777777887887777666665554431 22333444566667777666542 23333333
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHH
Q 001064 147 GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAM 226 (1167)
Q Consensus 147 ~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~ 226 (1167)
..+.-+..+|-.-+...|.|++|....++.+. ..|+.+++.-.|+++... |+....-.+.|+.++...+.+++.-.
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~-~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLY-YNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cchhhhHHHHHHhhccCCccHHHHHHHhhhhh-hhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 44555667777788888999999999999998 789999999999999984 44445567788888877788887766
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcc
Q 001064 227 IYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLT 306 (1167)
Q Consensus 227 iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~ 306 (1167)
+-.+++.+.......+|-..
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~------------------------------------------------------------ 307 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHA------------------------------------------------------------ 307 (564)
T ss_pred HHHHHHhhhhcchhhhhhhh------------------------------------------------------------
Confidence 66665554333223232111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 001064 307 EAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN 386 (1167)
Q Consensus 307 ~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~ 386 (1167)
.+.-..|++..|+..-+++|. +++.+...+...+..+...++.+.|+-.|+.|...-|.
T Consensus 308 -------------~~l~~~K~~~rAL~~~eK~I~--------~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 308 -------------QLLYDEKKFERALNFVEKCID--------SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred -------------hhhhhhhhHHHHHHHHHHHhc--------cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 112234667777777888888 88888888999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHH-HHH-HHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 387 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA-RFK-EQNGDIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 387 ~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a-~~~-e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
.-+.+.-+...+...|++.+|......++..+ +.+....-+.+ ... ..-..-++|.++|++. +.++|+...+....
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~-L~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKS-LKINPIYTPAVNLI 444 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhh-hccCCccHHHHHHH
Confidence 99999999999999999999999999999887 66666655553 332 2233457899999998 78999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
+.+..+.|.++.++.+++++|...++ -.++.++++++.. .+.+.+|...|..||.++|++..-...+-.+|.
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~D-------~~LH~~Lgd~~~A-~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFPD-------VNLHNHLGDIMRA-QNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhccc-------cHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 99999999999999999999999864 3488999999765 889999999999999999999999988888888
Q ss_pred hCCC
Q 001064 545 IQSS 548 (1167)
Q Consensus 545 ~~~~ 548 (1167)
...+
T Consensus 517 ~~~~ 520 (564)
T KOG1174|consen 517 SDDE 520 (564)
T ss_pred ccCC
Confidence 7643
No 56
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.65 E-value=8.7e-16 Score=171.26 Aligned_cols=159 Identities=19% Similarity=0.253 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHH
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 538 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~ 538 (1167)
-+|+.|+.+.+|.+.++.||.+|++|++.. .....+|+.+|.+++...++.+.|++||+++++.+|.+..+|..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 479999999999999999999999998543 22357999999999986778888999999999999999999999
Q ss_pred HHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHH-HHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchh
Q 001064 539 LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAE-REELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSE 617 (1167)
Q Consensus 539 ~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~-~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~~~~~~ 617 (1167)
|++|+...++ ++.+|.+||+++... +.+. ...||+.|++||..+||++++.++++|+.+++++..
T Consensus 76 Y~~~l~~~~d---~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~---- 141 (280)
T PF05843_consen 76 YLDFLIKLND---INNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN---- 141 (280)
T ss_dssp HHHHHHHTT----HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-----
T ss_pred HHHHHHHhCc---HHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh----
Confidence 9999999876 678999999998863 3344 788999999999999999999999999999998631
Q ss_pred hhhcchhhhhcchHHHhhhcCCCCCC
Q 001064 618 LRKRHAEDFLASERAKMAKSYSGAPS 643 (1167)
Q Consensus 618 ~~kr~~~~~~~~~~~k~~~~~~~~~~ 643 (1167)
.-...++||++++++||+..
T Consensus 142 ------~~~~f~~ry~~~~~~~~~~~ 161 (280)
T PF05843_consen 142 ------SLELFSDRYSFLDLNPISPR 161 (280)
T ss_dssp ------HHHHHHCCT-BTTB-CCHHC
T ss_pred ------HHHHHHHHhhccccCcccHH
Confidence 12346789999999999865
No 57
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.64 E-value=9.5e-13 Score=167.29 Aligned_cols=450 Identities=12% Similarity=0.042 Sum_probs=328.2
Q ss_pred cccCCCCchHHHHHHHHHHhC--CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCC
Q 001064 73 LVDGSAMSGEEDRLWNIVKAN--SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAE--FPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 73 ~~~~~~~~~a~~~l~~~l~~n--P~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~--~P~~~~~W~~~a~~e~~~~~ 148 (1167)
+...+.++++++.|+.+.... .-|...|..|+..+.+. ++++.++.++..+++. .| +...|..++..+.+.|+
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCC
Confidence 344589999999999888754 34778888999988874 6889999999998875 35 56889999999999999
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH
Q 001064 149 MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY 228 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy 228 (1167)
+++|+++|+++.. .+...|...+..+. ..|++++|..+|++++.. |..+. ...+...+......+....++.++
T Consensus 174 ~~~A~~lf~~m~~---~~~~t~n~li~~~~-~~g~~~~A~~lf~~M~~~-g~~p~-~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 174 LIDARRLFDEMPE---RNLASWGTIIGGLV-DAGNYREAFALFREMWED-GSDAE-PRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred HHHHHHHHhcCCC---CCeeeHHHHHHHHH-HCcCHHHHHHHHHHHHHh-CCCCC-hhhHHHHHHHHhcCCcHHHHHHHH
Confidence 9999999999865 35678888888887 679999999999999873 44333 345566666666678888888888
Q ss_pred HHHHhcchhh----HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccC
Q 001064 229 TRILENPIQQ----LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG 304 (1167)
Q Consensus 229 ~r~l~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~ 304 (1167)
..+++..... +..+...|.+ .. ..+++.. ++....+.
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k---~g------~~~~A~~----vf~~m~~~-------------------------- 288 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSK---CG------DIEDARC----VFDGMPEK-------------------------- 288 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHH---CC------CHHHHHH----HHHhCCCC--------------------------
Confidence 8877753221 1222222221 11 1122211 11111000
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 001064 305 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC 384 (1167)
Q Consensus 305 ~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~ 384 (1167)
+...| ...-..|.+.++.++|+..|++..+.. +.| +...+..++..+-+.|+++++..+++.++...
T Consensus 289 --~~vt~----n~li~~y~~~g~~~eA~~lf~~M~~~g------~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 289 --TTVAW----NSMLAGYALHGYSEEALCLYYEMRDSG------VSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred --ChhHH----HHHHHHHHhCCCHHHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 11112 222345788899999999999887521 222 24478888888889999999999999999873
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHH
Q 001064 385 -ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAII 462 (1167)
Q Consensus 385 -p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~ 462 (1167)
+.+..++..++..+.+.|++++|..+|++..+ .+...|..+...+.+.|+.++|.++|++... .+.|+ ...+.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~ 430 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFL 430 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHH
Confidence 56667899999999999999999999988653 3567888889999999999999999999732 24565 45677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 463 KHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 463 ~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
.....+.+.|..++|..+|+...+...-. +. ...|..+.+.+.+ .|++++|.++|++.- ..| +...|..++.-
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~---p~-~~~y~~li~~l~r-~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a 503 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIK---PR-AMHYACMIELLGR-EGLLDEAYAMIRRAP-FKP-TVNMWAALLTA 503 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCC---CC-ccchHhHHHHHHh-cCCHHHHHHHHHHCC-CCC-CHHHHHHHHHH
Confidence 77788889999999999999988643211 11 2356777777776 999999999998752 334 45678777776
Q ss_pred HhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 001064 543 ESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHAR 607 (1167)
Q Consensus 543 e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~ 607 (1167)
-...++ ++.++.++++.+...+++.. .+...+......|..+.+.++.+.+.+
T Consensus 504 ~~~~g~---~~~a~~~~~~l~~~~p~~~~---------~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 504 CRIHKN---LELGRLAAEKLYGMGPEKLN---------NYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHcCC---cHHHHHHHHHHhCCCCCCCc---------chHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 666665 66788889998887776542 456667777888999999888887754
No 58
>PLN03077 Protein ECB2; Provisional
Probab=99.62 E-value=7.4e-13 Score=172.36 Aligned_cols=450 Identities=11% Similarity=0.045 Sum_probs=265.3
Q ss_pred ccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhC--CCCHHHHHHHHHHHHhhhh
Q 001064 35 AAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKAN--SSDFSAWTALLEETEKLAQ 112 (1167)
Q Consensus 35 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~n--P~d~~aw~~L~~~~~~~~~ 112 (1167)
+-..|...|+.+.|..-|......+. ...-++-..+.+.|.++++++.|....+.. |+ ...+..++..+.+.
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~---~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a~~~~-- 301 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDC---ISWNAMISGYFENGECLEGLELFFTMRELSVDPD-LMTITSVISACELL-- 301 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCc---chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhc--
Confidence 34567778888888877777654322 223444444555588888888888877653 33 33344444444432
Q ss_pred hhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEF-PLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 191 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~-P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~f 191 (1167)
++++.+++++..+++.- .-+...|..++..+.+.|++++|+++|+++.. .++..|...+..+. ..|++++|..+|
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~-~~g~~~~A~~lf 377 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYE-KNGLPDKALETY 377 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHH-hCCCHHHHHHHH
Confidence 45555555555554432 22334455555555555555555555554432 23344544444444 345555555555
Q ss_pred HHHHHhcCCCCC----------------------------------CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001064 192 ERGLAYVGTDYL----------------------------------SFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 237 (1167)
Q Consensus 192 eral~~~g~d~~----------------------------------s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~ 237 (1167)
+++.. .|..+. +..+|..++..+.+.|+++.|+++|+++.+.+..
T Consensus 378 ~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 378 ALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred HHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 54433 122111 2234555555555555555555555554332221
Q ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH
Q 001064 238 QLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV 317 (1167)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~ 317 (1167)
.+..+...| .... ..+++..+...+.. ...| +...+..++
T Consensus 457 s~~~mi~~~---~~~g------~~~eA~~lf~~m~~--------------~~~p---------------d~~t~~~lL-- 496 (857)
T PLN03077 457 SWTSIIAGL---RLNN------RCFEALIFFRQMLL--------------TLKP---------------NSVTLIAAL-- 496 (857)
T ss_pred eHHHHHHHH---HHCC------CHHHHHHHHHHHHh--------------CCCC---------------CHhHHHHHH--
Confidence 111111111 1110 01111111111100 0001 011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 397 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~ 397 (1167)
..+...+..+.+.+.+..+++.- +. .+......+++.+.+.|+.++|..+|+++ ..+...|..++..
T Consensus 497 --~a~~~~g~l~~~~~i~~~~~~~g------~~-~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~ 563 (857)
T PLN03077 497 --SACARIGALMCGKEIHAHVLRTG------IG-FDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTG 563 (857)
T ss_pred --HHHhhhchHHHhHHHHHHHHHhC------CC-ccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHH
Confidence 12344455566666666666521 11 12334567889999999999999999986 4567899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhh-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcCCChHHHHHHHHHHHHHcCCH
Q 001064 398 MEASGSMDLAHNALARATHVFV-KRLPEIHLFAARFKEQNGDIDGARAAYQLVH--TETSPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~-p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~--~~~~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
+...|+.++|..+|++..+.-. |+ ...+........+.|++++|+.+|+... ..+.|+ ...|..+++++.|.|++
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCH
Confidence 9999999999999998876422 33 3344444556778999999999999873 123554 57788899999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001064 475 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 554 (1167)
Q Consensus 475 e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ 554 (1167)
++|..++++. ...|+ +.+|..+.... +..|+.+.|..+.++++++.|++...+..+..+....+..+++..
T Consensus 642 ~eA~~~~~~m-~~~pd-------~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 642 TEAYNFINKM-PITPD-------PAVWGALLNAC-RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHHHHHHC-CCCCC-------HHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 9999999875 22221 55787777764 448999999999999999999999888888877777777666555
Q ss_pred HHHHH
Q 001064 555 LEQLV 559 (1167)
Q Consensus 555 ar~l~ 559 (1167)
+|+..
T Consensus 713 vr~~M 717 (857)
T PLN03077 713 VRKTM 717 (857)
T ss_pred HHHHH
Confidence 55554
No 59
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1e-11 Score=137.22 Aligned_cols=269 Identities=11% Similarity=0.035 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 397 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~ 397 (1167)
...++-...++++|+..||+.++ -||-.++....|-+.+--.++..+...+-+.+...+...++--.-.|.+
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~k--------nDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNY 339 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRK--------NDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANY 339 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHh--------cCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhH
Confidence 34456677889999999999988 3444344444444433333445556666667777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001064 398 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 477 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 477 (1167)
+...++.+.|...|+||++++ |+...+|.+.++=+.+..+...|...|+++ ++++|.+..+|+.++..+.-++...-|
T Consensus 340 YSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA-vdi~p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA-VDINPRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH-HhcCchhHHHHhhhhHHHHHhcchHHH
Confidence 777777888888888888877 777888888887777777778888888887 778888888888888888888888888
Q ss_pred HHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHH
Q 001064 478 FSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQ 557 (1167)
Q Consensus 478 ~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~ 557 (1167)
.-.|++|++..|++ +.+|..+|....+ .+++++|.+.|++++...-.+...+..++.+...+.+ .+.+-.
T Consensus 418 LyYfqkA~~~kPnD------sRlw~aLG~CY~k-l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d---~~eAa~ 487 (559)
T KOG1155|consen 418 LYYFQKALELKPND------SRLWVALGECYEK-LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD---LNEAAQ 487 (559)
T ss_pred HHHHHHHHhcCCCc------hHHHHHHHHHHHH-hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh---HHHHHH
Confidence 88888888877543 6688888888655 7888888888888887766666666566666555543 344666
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 558 LVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 558 l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
+|++++...-...+ -.+..+.+......|+.+++|-+.+...-.+....
T Consensus 488 ~yek~v~~~~~eg~--~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 488 YYEKYVEVSELEGE--IDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 67776653211111 11222333333677778888777665544444433
No 60
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.62 E-value=8.4e-12 Score=139.47 Aligned_cols=435 Identities=14% Similarity=0.106 Sum_probs=235.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Q 001064 82 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG-SMDKVVEVYERAV 160 (1167)
Q Consensus 82 a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~-~~e~A~~l~eraL 160 (1167)
-...++.++...+.|...|..++.++.+. +...+..++|.++|..+|+++++|+.-|.++...+ +++.|+.+|.|+|
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~--~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKK--KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 35678899999999999999999999984 55889999999999999999999999999998655 4999999999999
Q ss_pred hccCCCHHHHHHHHHHHHhhcCCHHHHHHH-----------HHHHHHh--cCC-CCCCHHHHHHHHH--HHHHhhhHHHH
Q 001064 161 QGVTYSVDIWLHYCIFAINTYGDPETIRRL-----------FERGLAY--VGT-DYLSFPLWDKYIE--YEYMQQEWSRV 224 (1167)
Q Consensus 161 ~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~-----------feral~~--~g~-d~~s~~lw~~y~~--~e~~~~~~~~A 224 (1167)
+.+|+++.||..|.++++........-+++ .++.... +.. +.....+-..-.. .........+.
T Consensus 168 R~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel 247 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKEL 247 (568)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHH
Confidence 999999999999999988321111111111 1111110 000 0000000000000 00000000111
Q ss_pred -HHHHHHHHhcchhhH----HHHHHHHHHHHhc--CCCcccccHHHHHH---HHHHhhhCCCccchhhhccccccCCccc
Q 001064 225 -AMIYTRILENPIQQL----DRYFSSFKEFAAS--RPLSELRTAEEVDA---AAVAVAAAPSETGAEVKANEEEVQPDAT 294 (1167)
Q Consensus 225 -~~iy~r~l~~p~~~~----~~~~~~~~~~~~~--~~~~~~~~~ee~~~---~~~~~~~~~~e~~~~~~~~e~~~~p~~~ 294 (1167)
..+++-+....+.+. +..-..+..+... ...+......+... .--++|+-
T Consensus 248 ~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee-------------------- 307 (568)
T KOG2396|consen 248 QKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEE-------------------- 307 (568)
T ss_pred HHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHH--------------------
Confidence 122222222111111 1111111111110 00000000000000 00001100
Q ss_pred cccCCccccCcchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHH
Q 001064 295 EQTSKPVSAGLTEAEELEKYIAVREEMYK--KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNK 372 (1167)
Q Consensus 295 e~~~~~~~~~~~~~~~~~~~i~~~~~~y~--~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~ 372 (1167)
....+....-|+.||....+.+. ..+.....+..|+.+... ..+.+...+.+.....++.... .
T Consensus 308 ------~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~-----~~l~~~~~~~ys~~~l~~~t~~---~ 373 (568)
T KOG2396|consen 308 ------AVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHEL-----KLLSECLYKQYSVLLLCLNTLN---E 373 (568)
T ss_pred ------HHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-----cccccchHHHHHHHHHHHhccc---h
Confidence 00112233445556666544433 222344444456665541 2233333333333333333332 2
Q ss_pred HHHHHHHHH-HhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC-HHHHH--HHHH
Q 001064 373 VVKLYERCL-IACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD-IDGAR--AAYQ 447 (1167)
Q Consensus 373 a~~~yeral-~~~p~~~~~w~~ya~~l~~~-g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~-~~~A~--~~~~ 447 (1167)
++.+-+... ....++..+|+.+...+... .+++--...+--.+.-.+ ....+..|+..- .++ +...+ .++.
T Consensus 374 ~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~--~s~~~~~w~s~~--~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 374 AREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQV--CSELLISWASAS--EGDSLQEDTLDLIIS 449 (568)
T ss_pred HhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh--cchhHHHHHHHh--hccchhHHHHHHHHH
Confidence 222222222 33467788999998877632 333221111111111111 122333333222 222 22222 2333
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Q 001064 448 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV-SRNAEKARQILVDSL 526 (1167)
Q Consensus 448 ~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~-~g~~~~Ar~i~~kal 526 (1167)
.+.....++...+-..+..+..+.+.+.+|+.+|.+...+.|- .-.++-+...|+-.. .=++..+|++|..|+
T Consensus 450 a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~------sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 450 ALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPF------SLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCc------cHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 3333446777777778888888899999999999998887652 134666666665432 225899999999999
Q ss_pred hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001064 527 DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 565 (1167)
Q Consensus 527 ~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~ 565 (1167)
..+..+..+|..|..+|..+|.++. +-.+|-||+..
T Consensus 524 ~~fg~d~~lw~~y~~~e~~~g~~en---~~~~~~ra~kt 559 (568)
T KOG2396|consen 524 REFGADSDLWMDYMKEELPLGRPEN---CGQIYWRAMKT 559 (568)
T ss_pred HHhCCChHHHHHHHHhhccCCCccc---ccHHHHHHHHh
Confidence 9999999999999999999888654 56778887654
No 61
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.5e-13 Score=158.77 Aligned_cols=292 Identities=10% Similarity=0.056 Sum_probs=242.6
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 79 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYER 158 (1167)
Q Consensus 79 ~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~er 158 (1167)
..+|+..|.+.-...++--.....+++.+-.+ .++++++++|+.+=...|...+.--.|.-.+....+--+---+-+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl--~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFEL--IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 35667777774444455443334888888875 6999999999999999999987777777777766666666677788
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001064 159 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 238 (1167)
Q Consensus 159 aL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~ 238 (1167)
.+...|++++-|...++++- ..++.+.|++.|+||++..+.. .-.+...+.=.....++|.|...|+.+|...+.+
T Consensus 413 Li~~~~~sPesWca~GNcfS-LQkdh~~Aik~f~RAiQldp~f---aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFS-LQKDHDTAIKCFKRAIQLDPRF---AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHhhCCCCcHHHHHhcchhh-hhhHHHHHHHHHHHhhccCCcc---chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 88899999999999999987 6789999999999999955543 2223333332233578999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHH
Q 001064 239 LDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVR 318 (1167)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~ 318 (1167)
+-.||-+.
T Consensus 489 YnAwYGlG------------------------------------------------------------------------ 496 (638)
T KOG1126|consen 489 YNAWYGLG------------------------------------------------------------------------ 496 (638)
T ss_pred hHHHHhhh------------------------------------------------------------------------
Confidence 88888222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
-+|.++++++.|...|++|+. ++|.+.-+-..++.++.+.|+.++|+.+|++|+..+|.++---+..+.++
T Consensus 497 -~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 497 -TVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred -hheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 256777888888999999998 89999988888999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001064 399 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
...+++++|+..|++.-++. |+...++++.+.++.+.|+.+.|+.-|--+ .+++|.-..
T Consensus 568 ~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A-~~ldpkg~~ 626 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWA-LDLDPKGAQ 626 (638)
T ss_pred HhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHH-hcCCCccch
Confidence 99999999999999988766 899999999999999999999999999988 788987554
No 62
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.59 E-value=9.4e-12 Score=143.30 Aligned_cols=401 Identities=17% Similarity=0.207 Sum_probs=269.5
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHH
Q 001064 80 SGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA-RVGSMDKVVEVYER 158 (1167)
Q Consensus 80 ~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~-~~~~~e~A~~l~er 158 (1167)
+.....++..|...|.-+.-|-.++...-++ +....+.++|++.+.-+|.+..+|+.|..+.. ..++.+..+.+|++
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~kl--g~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKL--GNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 5566778888999999999999999998886 78999999999999999999999999999987 56788889999999
Q ss_pred HHhccC---CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh-----hhHHHHHHHHHH
Q 001064 159 AVQGVT---YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ-----QEWSRVAMIYTR 230 (1167)
Q Consensus 159 aL~~~P---~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~-----~~~~~A~~iy~r 230 (1167)
|+..+. .+..+|-.|+.|+. ..++......+|+|.|. +|.+.. ...+..|-.+.... ..++.+..+=..
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en-~qks~k~v~~iyeRile-iP~~~~-~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFEN-GQKSWKRVANIYERILE-IPLHQL-NRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHh-ccccHHHHHHHHHHHHh-hhhhHh-HHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 998775 58999999999997 67899999999999998 555422 24555555555442 122322222221
Q ss_pred HHh---cch-hhHHHHHHHHHHHHhcCCCcccccHH-----HHHHHHHHhhhCCCccchhhhccccccCCccccccCCcc
Q 001064 231 ILE---NPI-QQLDRYFSSFKEFAASRPLSELRTAE-----EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPV 301 (1167)
Q Consensus 231 ~l~---~p~-~~~~~~~~~~~~~~~~~~~~~~~~~e-----e~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~ 301 (1167)
..+ ++. .....-+..+...... +....+.+ +...+++.++....+........|..+..+... .++.
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~--~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfh--vkpl 292 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTD--PSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFH--VKPL 292 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccC--ccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccc--cCcc
Confidence 111 000 0011111122111110 01111111 111122222222111111111111111100000 0111
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001064 302 SAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL 381 (1167)
Q Consensus 302 ~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral 381 (1167)
...+.++|+.|+.. ....++++.....|++.+. ++. .-.+.|.+|+.|.+..|+.+-+..++.++.
T Consensus 293 --~~aql~nw~~yLdf----~i~~g~~~~~~~l~ercli------~cA--~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 293 --DQAQLKNWRYYLDF----EITLGDFSRVFILFERCLI------PCA--LYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred --cHHHHHHHHHHhhh----hhhcccHHHHHHHHHHHHh------HHh--hhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 12445677777644 3455777788888998874 111 123689999999999999999998888877
Q ss_pred Hh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHH---HHHHHHhh-hcCCC
Q 001064 382 IA-CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR---AAYQLVHT-ETSPG 456 (1167)
Q Consensus 382 ~~-~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~---~~~~~a~~-~~~P~ 456 (1167)
+. ++..+.+.+.++.+.+..|+++.|+.+|++...-+ |....+-+.++.++.+.|+.+.+. .++..... ..+++
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 65 78999999999999999999999999999999988 899999999999999999999988 44443310 11222
Q ss_pred h-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 457 L-LEAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 457 ~-~~~~~~~a~~e~-r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
. ...+..++.+.. -.++.+.|+.++.++++..+.. -.+|..+.+|+..
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~------k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDC------KVLYLELIRFELI 487 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc------HHHHHHHHHHHHh
Confidence 2 234566665543 3478899999999999998642 4589999999776
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.58 E-value=3.3e-13 Score=137.45 Aligned_cols=204 Identities=15% Similarity=0.131 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 469 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 469 (1167)
+.+.++.-+...|+...|+.-+++|+++. |++...|...|.++...|+.+.|.+.|+++ +.++|++.++...|+.|++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA-lsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKA-LSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHH-HhcCCCccchhhhhhHHHH
Confidence 55666666667788888888888888866 788888888888888888888888888888 6788888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh
Q 001064 470 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 470 r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~ 549 (1167)
.+|.+++|...|++|+.... -+..+..|.+++.+..+ .|+.+.|+.+|+++|+++|+.+.....++.+++..++
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~----Y~~~s~t~eN~G~Cal~-~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~- 188 (250)
T COG3063 115 AQGRPEEAMQQFERALADPA----YGEPSDTLENLGLCALK-AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD- 188 (250)
T ss_pred hCCChHHHHHHHHHHHhCCC----CCCcchhhhhhHHHHhh-cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc-
Confidence 88888888888888887531 12234567777777666 8889999999999999998888888888888887765
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 550 KQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 550 ~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
.-.+|..+++.....+.+. +-+..-+.++...||.+.+.+...++..+||..
T Consensus 189 --y~~Ar~~~~~~~~~~~~~A---------~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 189 --YAPARLYLERYQQRGGAQA---------ESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred --chHHHHHHHHHHhcccccH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 4457888888877654332 356667789999999999999999999999975
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=1.1e-12 Score=161.50 Aligned_cols=169 Identities=14% Similarity=0.015 Sum_probs=120.2
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
++|++...|..++..+...|++++|+.+|++++..+|.++..++.++..+...|++++|+..+++++...+|+.+..+..
T Consensus 367 l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~ 446 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSM 446 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHH
Confidence 34444455555566666788999999999999999999887665555555567889999999999988766788888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
++.++...|++++|+..+.++ ....|+....+...+..+.+.| +++...+++.++...... ..+.. +..++
T Consensus 447 la~~l~~~G~~~eA~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~---~~~~~---~~~~~ 517 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEI-STQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID---NNPGL---LPLVL 517 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHh-hhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh---cCchH---HHHHH
Confidence 999999999999999999886 6667887777777777776776 488888888776553211 11111 33332
Q ss_pred HHHhCCHHHHHHHHHHHHhh
Q 001064 509 HLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 509 ~~~~g~~~~Ar~i~~kal~~ 528 (1167)
. ..|+.+.+.-+ +++.+.
T Consensus 518 ~-~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 518 V-AHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H-HHhhhHHHHHH-HHhhcc
Confidence 2 36666665554 555443
No 65
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.58 E-value=2.3e-12 Score=141.13 Aligned_cols=435 Identities=16% Similarity=0.205 Sum_probs=282.7
Q ss_pred CcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC
Q 001064 52 ATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL 131 (1167)
Q Consensus 52 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~ 131 (1167)
++.-+..+|..+--...+-+.|..++.+++..+.+++...-.|.-..+|..++.-... -+++.....+|-++|..- .
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA--~~df~svE~lf~rCL~k~-l 107 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA--RKDFRSVESLFGRCLKKS-L 107 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhh--hhhHHHHHHHHHHHHhhh-c
Confidence 4445667777776677777888877999999999999999999999999977764333 268889999999999765 4
Q ss_pred CHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHhccCCCHHHHHHHHHHHHh--------hcCCHHHHHHHHHHH
Q 001064 132 CYGYWKKYADHEARVGS---------MDKVVEVYERAVQGVTYSVDIWLHYCIFAIN--------TYGDPETIRRLFERG 194 (1167)
Q Consensus 132 ~~~~W~~~a~~e~~~~~---------~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~--------~~~~~~~Ar~~fera 194 (1167)
+.++|..|.+.-.+.++ +-+|-+.--.|.-..|.+..+|-.|+.|+.. ...++|..|+.|.||
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 58999999998777653 2233333334555678999999999999862 123578899999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHhhhHH-------------HHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccH
Q 001064 195 LAYVGTDYLSFPLWDKYIEYEYMQQEWS-------------RVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 261 (1167)
Q Consensus 195 l~~~g~d~~s~~lw~~y~~~e~~~~~~~-------------~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1167)
|. .|.+-. ..+|..|-.||.+.++.. .||..|+.+.. +.......+....
T Consensus 188 l~-tP~~nl-eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~n---------------lt~Gl~v~~~~~~ 250 (660)
T COG5107 188 LQ-TPMGNL-EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQN---------------LTRGLSVKNPINL 250 (660)
T ss_pred Hc-CccccH-HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH---------------HhccccccCchhh
Confidence 98 454422 489999999999976533 33444433321 1111100000000
Q ss_pred HHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH-H-HHHHHHHH-HHHHHhh
Q 001064 262 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY-K-KAKEFDSK-IIGFETA 338 (1167)
Q Consensus 262 ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y-~-~~~~~~~a-~~~~e~a 338 (1167)
..+. . + +. +...+|..+|.-....- + ...-..+. --.|+.+
T Consensus 251 Rt~n--------K-------------------~--------~r-~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~ 294 (660)
T COG5107 251 RTAN--------K-------------------A--------AR-TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQI 294 (660)
T ss_pred hhhc--------c-------------------c--------cc-cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHH
Confidence 0000 0 0 00 00111222211110000 0 00000011 1125555
Q ss_pred hcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 339 IRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 339 l~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+. || +-..++|..|-.+....+|-++|+...+|++..||. +.++|+.+++...+.++...+|+++++..
T Consensus 295 ~~--y~------~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 295 LD--YF------YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HH--Hh------hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 54 11 112478999999999999999999999999977776 88899998888888888888887776643
Q ss_pred hc--------------c----ChHH-----------HHHHHHHHHHcCCHHHHHHHHHHHhhhc-CCChHHHHHHHHHHH
Q 001064 419 VK--------------R----LPEI-----------HLFAARFKEQNGDIDGARAAYQLVHTET-SPGLLEAIIKHANME 468 (1167)
Q Consensus 419 ~p--------------~----~~~l-----------~~~~a~~~e~~g~~~~A~~~~~~a~~~~-~P~~~~~~~~~a~~e 468 (1167)
.. + .+++ |..+...-.+..-++.||++|-++...- ...+.-++..+..+.
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~ 443 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY 443 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH
Confidence 21 0 1222 2222333345566888999999873211 122333344444443
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC--HHHHHHHHHhHhhC
Q 001064 469 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS--KPLLEALIHFESIQ 546 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~--~~l~~~~~~~e~~~ 546 (1167)
..|+..-|-.+|+..+..+++. +.....|..|+.. .++-..||.+|+++++..-+. +.+|..|+.+|...
T Consensus 444 -~~~d~~ta~~ifelGl~~f~d~------~~y~~kyl~fLi~-inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~ 515 (660)
T COG5107 444 -ATGDRATAYNIFELGLLKFPDS------TLYKEKYLLFLIR-INDEENARALFETSVERLEKTQLKRIYDKMIEYESMV 515 (660)
T ss_pred -hcCCcchHHHHHHHHHHhCCCc------hHHHHHHHHHHHH-hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh
Confidence 4688999999999999998642 4455788888887 899999999999999877666 79999999999999
Q ss_pred CChhHHHHHHHHHHHHhh
Q 001064 547 SSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 547 ~~~~~~~~ar~l~eral~ 564 (1167)
|+... +-.+=+|+..
T Consensus 516 G~lN~---v~sLe~rf~e 530 (660)
T COG5107 516 GSLNN---VYSLEERFRE 530 (660)
T ss_pred cchHH---HHhHHHHHHH
Confidence 98443 4444444433
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=1.2e-12 Score=161.12 Aligned_cols=263 Identities=13% Similarity=0.071 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHH---------HcCChHHHHHHHH
Q 001064 309 EELEKYIAVREEMYK-KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE---------RDGDFNKVVKLYE 378 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~-~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e---------~~g~~~~a~~~ye 378 (1167)
+.+..|+.-+..++. ....+.+|+..|+++++ ++|.....|..++.++. ..+++++|+..++
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 444445444333333 23567889999999998 89988888887776543 2245789999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001064 379 RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 379 ral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 458 (1167)
+++..+|+++++|..++.++...|++++|...|++|+++. |+++.+|+.++.++...|++++|+..|+++ ++++|++.
T Consensus 329 ~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A-l~l~P~~~ 406 (553)
T PRK12370 329 KATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC-LKLDPTRA 406 (553)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCCh
Confidence 9999999999999999999999999999999999999988 899999999999999999999999999998 89999988
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHH
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 538 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~ 538 (1167)
..++..+.+....|++++|+..+++++...+ +..+..+..++.++.. .|++++|+..+++.+...|++...+..
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-----p~~~~~~~~la~~l~~-~G~~~eA~~~~~~~~~~~~~~~~~~~~ 480 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHL-----QDNPILLSMQVMFLSL-KGKHELARKLTKEISTQEITGLIAVNL 480 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-----ccCHHHHHHHHHHHHh-CCCHHHHHHHHHHhhhccchhHHHHHH
Confidence 7765556566678999999999999998753 2236677778888665 999999999999999888887777765
Q ss_pred HHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001064 539 LIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 601 (1167)
Q Consensus 539 ~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v 601 (1167)
+.......++ .....++.+++.... .+.+. -| .-.|+..+||-+....+
T Consensus 481 l~~~~~~~g~-~a~~~l~~ll~~~~~-~~~~~----------~~--~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 481 LYAEYCQNSE-RALPTIREFLESEQR-IDNNP----------GL--LPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHHhccHH-HHHHHHHHHHHHhhH-hhcCc----------hH--HHHHHHHHhhhHHHHHH
Confidence 5554444432 112233443333322 11111 11 55566777776665554
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1e-11 Score=146.52 Aligned_cols=294 Identities=10% Similarity=0.060 Sum_probs=167.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHhhcCCHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV-DIWLHYCIFAINTYGDPETIRRL 190 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~-~lw~~ya~~~~~~~~~~~~Ar~~ 190 (1167)
+|++++|++...+.-...+...-++...+....+.|+++.|...|+++.+..|++. ......+.+.+ ..|+++.|+..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHH
Confidence 46777777666555444332234444445555777777777777777777766653 22233355655 56777777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Q 001064 191 FERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVA 270 (1167)
Q Consensus 191 feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~ 270 (1167)
++++++..|. +..............|+|++|..++.++.+....+.+.+- ...
T Consensus 176 l~~~~~~~P~---~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~-~l~----------------------- 228 (398)
T PRK10747 176 VDKLLEVAPR---HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA-MLE----------------------- 228 (398)
T ss_pred HHHHHhcCCC---CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH-HHH-----------------------
Confidence 7777774443 3555666666666677777777777666543221111000 000
Q ss_pred hhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCC
Q 001064 271 VAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS 350 (1167)
Q Consensus 271 ~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld 350 (1167)
T Consensus 229 -------------------------------------------------------------------------------- 228 (398)
T PRK10747 229 -------------------------------------------------------------------------------- 228 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 430 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a 430 (1167)
...|..++.-.....+.+....++++.....+++++++..|+..+...|+.++|..+++++++. +.++.+...++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~l~~ 303 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVLLIP 303 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHh
Confidence 0001111111111122233333333333334556667777777666677777777777766662 33455555555
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
.+. .++.+++++.+++. .+..|+++.+++.++.+..+.+++++|+..|+++++..|+ ...+..++.++..
T Consensus 304 ~l~--~~~~~~al~~~e~~-lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-------~~~~~~La~~~~~ 373 (398)
T PRK10747 304 RLK--TNNPEQLEKVLRQQ-IKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-------AYDYAWLADALDR 373 (398)
T ss_pred hcc--CCChHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHH
Confidence 442 36666677766665 5566777777777777777777777777777777766543 2234456666554
Q ss_pred HhCCHHHHHHHHHHHHhhc
Q 001064 511 VSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 511 ~~g~~~~Ar~i~~kal~~~ 529 (1167)
.|+.++|..+|+++|.+.
T Consensus 374 -~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 374 -LHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -cCCHHHHHHHHHHHHhhh
Confidence 677777777777776543
No 68
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=2.3e-12 Score=152.83 Aligned_cols=295 Identities=7% Similarity=-0.015 Sum_probs=225.7
Q ss_pred cCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHH
Q 001064 75 DGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY-GYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 75 ~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~-~~W~~~a~~e~~~~~~e~A~ 153 (1167)
..|+++.+.+.+.++.+..|...-.+...++.+.. .|+.+++...|+++++.+|++. .+...++.+.+..|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~--~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ--RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34899999999999999999988888888888876 4899999999999999999985 67777899999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHH
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVA-MIYTRIL 232 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~-~iy~r~l 232 (1167)
..+++.++..|.+..++..++..++ ..|+++.++..+++.++....+ .. ++..++ ..+...+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~-~~~d~~~a~~~l~~l~k~~~~~---~~-------------~~~~l~~~a~~~~l 236 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYI-RSGAWQALDDIIDNMAKAGLFD---DE-------------EFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHcCCCC---HH-------------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999 7899999999999999852221 11 011110 0000000
Q ss_pred hcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001064 233 ENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 312 (1167)
Q Consensus 233 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~ 312 (1167)
.....
T Consensus 237 -----------~~~~~---------------------------------------------------------------- 241 (409)
T TIGR00540 237 -----------DEAMA---------------------------------------------------------------- 241 (409)
T ss_pred -----------HHHHH----------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH--
Q 001064 313 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY-- 390 (1167)
Q Consensus 313 ~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~-- 390 (1167)
++.+..++..... .+...+++..++..++..+...|++++|..++++++...|++...
T Consensus 242 ----------------~~~~~~L~~~~~~----~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~ 301 (409)
T TIGR00540 242 ----------------DEGIDGLLNWWKN----QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL 301 (409)
T ss_pred ----------------hcCHHHHHHHHHH----CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh
Confidence 0000001111110 000112356789999999999999999999999999999988763
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh--HHHHHHHHHHHHcCCHHHHHHHHHH--HhhhcCCChHHHHHHH
Q 001064 391 --WIRYVLCMEASGSMDLAHNALARATHVFVKRLP--EIHLFAARFKEQNGDIDGARAAYQL--VHTETSPGLLEAIIKH 464 (1167)
Q Consensus 391 --w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~--~l~~~~a~~~e~~g~~~~A~~~~~~--a~~~~~P~~~~~~~~~ 464 (1167)
...+.. + ..++.+.++..++++++.. |+++ .+...++.++.+.|++++|++.|++ + .+..|+... +..+
T Consensus 302 ~~l~~~~~-l-~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~-~~~L 376 (409)
T TIGR00540 302 PLCLPIPR-L-KPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDAND-LAMA 376 (409)
T ss_pred HHHHHhhh-c-CCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHH-HHHH
Confidence 222222 2 2477888999999999987 8899 8889999999999999999999994 5 567887766 5588
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
+.++.++|+.++|..+|++++...
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 69
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=6.6e-14 Score=145.38 Aligned_cols=94 Identities=23% Similarity=0.456 Sum_probs=82.2
Q ss_pred ccccCCCCCCCCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CC
Q 001064 1017 FEAVDDSLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP 1095 (1167)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~ 1095 (1167)
|.++.++... +.+-++|||+-|+++++|.+|+..|+.||+|+.|++ |++..||+++|||||+|++..++..|.+. .|
T Consensus 88 wdP~~dp~a~-gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikrirl-V~d~vTgkskGYAFIeye~erdm~~AYK~adG 165 (335)
T KOG0113|consen 88 WDPNNDPNAI-GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRL-VRDKVTGKSKGYAFIEYEHERDMKAAYKDADG 165 (335)
T ss_pred cCCCCCCccc-CCccceeeeeeccccccHHHHHHHHHhcCcceeEEE-eeecccCCccceEEEEeccHHHHHHHHHhccC
Confidence 4444444333 357899999999999999999999999999999974 89999999999999999999999999987 79
Q ss_pred CeeeCcEeEEEeccCCC
Q 001064 1096 IQLAGRQVYIEERRPNT 1112 (1167)
Q Consensus 1096 ~~i~g~~l~V~~~r~~~ 1112 (1167)
+.|+|+.|.|+.-+.+.
T Consensus 166 ~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 166 IKIDGRRILVDVERGRT 182 (335)
T ss_pred ceecCcEEEEEeccccc
Confidence 99999999998877554
No 70
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.54 E-value=8.3e-14 Score=158.02 Aligned_cols=82 Identities=24% Similarity=0.392 Sum_probs=72.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEEe
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIEE 1107 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~~ 1107 (1167)
.++|||+|||.++|+++|+++|++||.|+.|.| ++++.+|++||||||+|.+.++|++||+. ++..+.| +.|+|.+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i-~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNI-LRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEE-eecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 368999999999999999999999999999886 56778999999999999999999999987 7888866 6799988
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++.+..
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876543
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.1e-11 Score=133.71 Aligned_cols=414 Identities=12% Similarity=0.097 Sum_probs=254.6
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 001064 76 GSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV 155 (1167)
Q Consensus 76 ~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l 155 (1167)
.|+++.++..|-.+|.++|.|.-.+..-...+.++ +++.+|.+--.+.+.+.|+....|...+....-.|+|++|+..
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 37888888888888888888766665555555553 6788888888888888888888888888888888888888888
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Q 001064 156 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE-- 233 (1167)
Q Consensus 156 ~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~-- 233 (1167)
|..+|+..|.+..|.--+++... ..+.+ +.-+.+..+|.....-.+... .-....|..+++
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~~----------~~~~~-----~~~~~~p~~~~~l~~~p~t~~--~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAYL----------EDYAA-----DQLFTKPYFHEKLANLPLTNY--SLSDPAYVKILEII 155 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhhh----------HHHHh-----hhhccCcHHHHHhhcChhhhh--hhccHHHHHHHHHh
Confidence 88888888888777665555542 11111 122334566666665443321 122223333333
Q ss_pred -cchhhHHHHHHHHHHHHhcC-CCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHH-
Q 001064 234 -NPIQQLDRYFSSFKEFAASR-PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE- 310 (1167)
Q Consensus 234 -~p~~~~~~~~~~~~~~~~~~-~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~- 310 (1167)
..+.++..+.+ ...+.... .+..+..... +. .+ +........|. .....+. ..+.+...
T Consensus 156 ~~~p~~l~~~l~-d~r~m~a~~~l~~~~~~~~--------~~-----~~-~~~~~~~~~p~--~~~~~~~-~~~~d~~ee 217 (539)
T KOG0548|consen 156 QKNPTSLKLYLN-DPRLMKADGQLKGVDELLF--------YA-----SG-IEILASMAEPC--KQEHNGF-PIIEDNTEE 217 (539)
T ss_pred hcCcHhhhcccc-cHHHHHHHHHHhcCccccc--------cc-----cc-cccCCCCCCcc--cccCCCC-CccchhHHH
Confidence 23333322221 11110000 0000000000 00 00 00000000010 0000000 11111111
Q ss_pred HH-H----HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 001064 311 LE-K----YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA 385 (1167)
Q Consensus 311 ~~-~----~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p 385 (1167)
.+ + -....+....+.+++..++..|..+|. ++ ............+...|.+.+.+...+.++....
T Consensus 218 ~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e--------l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr 288 (539)
T KOG0548|consen 218 RRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE--------LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR 288 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh--------Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH
Confidence 10 0 111123334466788899999999998 77 6677777777777777777777666666665422
Q ss_pred CCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHH---------------------------HHHHH
Q 001064 386 NYPE-------YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH---------------------------LFAAR 431 (1167)
Q Consensus 386 ~~~~-------~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~---------------------------~~~a~ 431 (1167)
..-. ...+.+..+.+.++++.++..|++++..+. .+++. ...+.
T Consensus 289 e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R--t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGn 366 (539)
T KOG0548|consen 289 ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR--TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGN 366 (539)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc--CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence 1111 222233344455778888888988887552 11111 11233
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
-....|++..|...|.++ +..+|++..+|.+++..+.++|++..|....+++|+++|+ ....|+.-+..++.
T Consensus 367 e~Fk~gdy~~Av~~YteA-Ikr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~------~~kgy~RKg~al~~- 438 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEA-IKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN------FIKAYLRKGAALRA- 438 (539)
T ss_pred HHHhccCHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch------HHHHHHHHHHHHHH-
Confidence 345678999999999998 7889999999999999999999999999999999999853 35667777777665
Q ss_pred hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 512 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 512 ~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
..++++|.+.|.++++++|.+..+...|..--..
T Consensus 439 mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 8889999999999999999999988877766553
No 72
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.53 E-value=3.3e-11 Score=128.13 Aligned_cols=162 Identities=16% Similarity=0.137 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH-
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL- 396 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~- 396 (1167)
|.+.|...++...||.....+-+ +..++-+...+...++-..|+.+..+...+.||+.+|.+...+-.|-.
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~ask--------Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASK--------LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHh--------ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 44455555666666666655544 555666677777777777888888888888888888776543322221
Q ss_pred -----HHH------HcCCHHHHHHHHHHHHHhhhccChHHH----HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001064 397 -----CME------ASGSMDLAHNALARATHVFVKRLPEIH----LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 397 -----~l~------~~g~~e~A~~vl~rA~~~~~p~~~~l~----~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 461 (1167)
.++ ..+++.+++...++.++.. |..+.+. -..-.+...-+++-+|+..+.++ +.++|++..++
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev-L~~d~~dv~~l 344 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV-LDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CcccceeeeeeheeeecccccCCHHHHHHHHHHH-HhcCchHHHHH
Confidence 111 1233444444444444433 2222221 12223333455666666666665 55666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 462 IKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 462 ~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+.+++.+.-...||.|+.-|++|++.++
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 6666666555566666666666666554
No 73
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=6.7e-12 Score=136.97 Aligned_cols=453 Identities=13% Similarity=0.035 Sum_probs=292.6
Q ss_pred ccccCCcCCcccccCCCCc-ccCCCCCC-CccCCCCcccccccCCCCchHHHHHHHHHHhCCC-CHHHHHHHHH----HH
Q 001064 35 AAGYNSMNGNVVNEAGNAT-STENGTSL-GIESGAAAGQELVDGSAMSGEEDRLWNIVKANSS-DFSAWTALLE----ET 107 (1167)
Q Consensus 35 ~~~~~~~~g~~~~~~~~~~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~-d~~aw~~L~~----~~ 107 (1167)
|++.|++|.-+.+|++-|. -|+|+... .-.+.+.++-++....++.++++.++-+|..-|. +-+....+.+ ..
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 5678888888889988776 46676543 3345777888877768899999999999888876 2222222221 11
Q ss_pred HhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC---C-----------HHHHH--
Q 001064 108 EKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY---S-----------VDIWL-- 171 (1167)
Q Consensus 108 ~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~---s-----------~~lw~-- 171 (1167)
-+ .|.++.|+..|+..++..|+.. .-+.++-.+...++-++.++.|.+++.+ |. + ..|..
T Consensus 287 iq--~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~i-p~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 287 IQ--AGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDI-PGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred Ee--cccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcC-CCCCCcccccCCcCCcchHHHHHH
Confidence 11 3788899999999999999764 4456777777889999999999998863 21 1 11111
Q ss_pred ----HHHHHHHhhcCCHHHHHHHH----------------HHHHHhcC--CC-CCCHHHHHHHHHHHHHhhhHHHHHHHH
Q 001064 172 ----HYCIFAINTYGDPETIRRLF----------------ERGLAYVG--TD-YLSFPLWDKYIEYEYMQQEWSRVAMIY 228 (1167)
Q Consensus 172 ----~ya~~~~~~~~~~~~Ar~~f----------------eral~~~g--~d-~~s~~lw~~y~~~e~~~~~~~~A~~iy 228 (1167)
++-+++.+...+-++++-.- +-+|..+. .+ .....|-..-+--+++++.++.|+.|+
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 11223332222223322211 11111111 11 112334333344456678899998887
Q ss_pred HHHHhcchhhHHHHHHHHHH--HHh-cCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCc
Q 001064 229 TRILENPIQQLDRYFSSFKE--FAA-SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGL 305 (1167)
Q Consensus 229 ~r~l~~p~~~~~~~~~~~~~--~~~-~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~ 305 (1167)
.-.-..........-+.++. |.. .. ++..+...+ +....+.....
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk---~~~~aqqya----d~aln~dryn~------------------------- 490 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGK---DFADAQQYA----DIALNIDRYNA------------------------- 490 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhccc---chhHHHHHH----HHHhcccccCH-------------------------
Confidence 65444432221111111111 111 11 010001000 00000000000
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 001064 306 TEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA 385 (1167)
Q Consensus 306 ~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p 385 (1167)
. .+.-.+.+-..++++++|...|.++|. -|....+..++.+-.++..|+.++|+.+|-+.....-
T Consensus 491 ------~-a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 491 ------A-ALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred ------H-HhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 0 000011222346788889999999997 5666778888888888999999999999999888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 386 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 386 ~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
++.++.+.++.+++...+...|+++|-.+..+. |++|.+.-.+++++.+.|+...|..++-.. -+..|.+.+..--++
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sli-p~dp~ilskl~dlydqegdksqafq~~yds-yryfp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLI-PNDPAILSKLADLYDQEGDKSQAFQCHYDS-YRYFPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-CCCHHHHHHHHHHhhcccchhhhhhhhhhc-ccccCcchHHHHHHH
Confidence 999999999999999999999999999999887 899999999999999999999999887665 467888888733333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY-AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~-~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
.++....=.++++.+|++|.-+.|+. .-| +..+..+. ..|++.+|..+|+.....+|.+.+.+..++++--
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~-------~kwqlmiasc~r-rsgnyqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQ-------SKWQLMIASCFR-RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccH-------HHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 44444445689999999998887642 123 23344444 4999999999999999999999888777776665
Q ss_pred hCCC
Q 001064 545 IQSS 548 (1167)
Q Consensus 545 ~~~~ 548 (1167)
.+|-
T Consensus 706 dlgl 709 (840)
T KOG2003|consen 706 DLGL 709 (840)
T ss_pred cccc
Confidence 5553
No 74
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.1e-13 Score=133.15 Aligned_cols=80 Identities=29% Similarity=0.467 Sum_probs=70.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
-.++||||||+..+++.+|+.+|..||+|.+ |+|-. .+.|||||||++..+|+.|+.. +|..|.|..|+||..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs--vWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRS--VWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCccee--EEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 3689999999999999999999999999999 45533 3579999999999999999987 799999999999998
Q ss_pred cCCCCCC
Q 001064 1109 RPNTGST 1115 (1167)
Q Consensus 1109 r~~~~~~ 1115 (1167)
+.+...+
T Consensus 83 ~G~~r~~ 89 (195)
T KOG0107|consen 83 TGRPRGS 89 (195)
T ss_pred cCCcccc
Confidence 8765543
No 75
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=4.2e-12 Score=138.48 Aligned_cols=440 Identities=14% Similarity=0.093 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC-CHHHHHHH
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFL--AEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY-SVDIWLHY 173 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l--~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~-s~~lw~~y 173 (1167)
|...+.|++-++. .+...+|...|+-.+ +.||+...+-...+.++.++.+|.+|++.|+-+|..+|. +.+..+..
T Consensus 201 fsvl~nlaqqy~~--ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 201 FSVLFNLAQQYEA--NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred HHHHHHHHHHhhh--hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 5556677777765 356788999999888 468999888889999999999999999999999999984 44554444
Q ss_pred HHHHH---hhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHH-HH------
Q 001064 174 CIFAI---NTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDR-YF------ 243 (1167)
Q Consensus 174 a~~~~---~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~-~~------ 243 (1167)
.+-.- -+.|.++.|+..|++++...|.-.....|...| ...+.-++-++.|++++.+|..--+. +.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~----f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICA----FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhh----eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 33111 135899999999999999665432222222222 23577788889999999875432111 11
Q ss_pred --HHHHHHHhcCCCcccc-----cHHHHHHHHHHhhhCCCccc---hhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 244 --SSFKEFAASRPLSELR-----TAEEVDAAAVAVAAAPSETG---AEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 244 --~~~~~~~~~~~~~~~~-----~~ee~~~~~~~~~~~~~e~~---~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
+...+-+++-.+..++ .+|.++....++..-..+.. +-... +|......-+.+ ...
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwc---------le~lk~s~~~~l-----a~d 420 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWC---------LESLKASQHAEL-----AID 420 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHH---------HHHHHHhhhhhh-----hhh
Confidence 0000000000000000 11111111111100000000 00000 000000000000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHH------------HHHHHHHHH----------------
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN------------WHNYLDFIE---------------- 365 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~------------W~~y~~~~e---------------- 365 (1167)
+-......|.++++++.|+.++.-.-+..- .+.....+++-+ -..|++...
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdn-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDN-KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI 499 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccc-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence 000011235566677766665421111000 000000111111 111222111
Q ss_pred --HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHH
Q 001064 366 --RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGAR 443 (1167)
Q Consensus 366 --~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~ 443 (1167)
-+||+++|...|+.+|..+....++.+..+...+.+|++++|+.+|-+.-.+. -++.++....+.+++...+...|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHH
Confidence 23788999999999999888888999999988889999999999998887776 678899999999999999999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001064 444 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILV 523 (1167)
Q Consensus 444 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ 523 (1167)
++|-++ ..+.|+++.++.++++++.+.|+...|..++-.....+|.+ .+....++.+ |....=.++|..+|+
T Consensus 579 e~~~q~-~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n------ie~iewl~ay-yidtqf~ekai~y~e 650 (840)
T KOG2003|consen 579 ELLMQA-NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN------IETIEWLAAY-YIDTQFSEKAINYFE 650 (840)
T ss_pred HHHHHh-cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc------hHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 999998 78899999999999999999999999999988888888643 2222222222 222334688999999
Q ss_pred HHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCC
Q 001064 524 DSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDS 569 (1167)
Q Consensus 524 kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~ 569 (1167)
+|--..|+-..+.+..+.-..+.|+ ...+..+|......+|.+
T Consensus 651 kaaliqp~~~kwqlmiasc~rrsgn---yqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 651 KAALIQPNQSKWQLMIASCFRRSGN---YQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHhcCccHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhCccc
Confidence 9887777655444333333333344 455666666666666654
No 76
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=6.9e-11 Score=139.47 Aligned_cols=291 Identities=8% Similarity=0.009 Sum_probs=215.8
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTAL-LEETEKLAQDNIVKIRRVYDAFLAEFPLCY-GYWKKYADHEARVGSMDKVVE 154 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L-~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~-~~W~~~a~~e~~~~~~e~A~~ 154 (1167)
|+++.+++.+.+.-+..+ +....+.+ ++.... .|+.+.+...|+++.+..|++. ......++++...|++++|..
T Consensus 98 Gd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~--~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQ--RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888866665444322 23333444 444344 5899999999999999999985 344455899999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHH-HHHHHHHh
Q 001064 155 VYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVA-MIYTRILE 233 (1167)
Q Consensus 155 l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~-~iy~r~l~ 233 (1167)
.+++.++..|.+..+....+..+. ..|++++|..++++..+....+ ... ..+.+ ..|...+.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~-~~gdw~~a~~~l~~l~k~~~~~---~~~-------------~~~l~~~a~~~l~~ 237 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYI-RTGAWSSLLDILPSMAKAHVGD---EEH-------------RAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHcCCCC---HHH-------------HHHHHHHHHHHHHH
Confidence 999999999999999999999998 6799999999999999854332 110 01000 01100000
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
. .... .+.+.+.+
T Consensus 238 ~--------------~~~~-----------------------------------------------------~~~~~l~~ 250 (398)
T PRK10747 238 Q--------------AMAD-----------------------------------------------------QGSEGLKR 250 (398)
T ss_pred H--------------HHHh-----------------------------------------------------cCHHHHHH
Confidence 0 0000 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 393 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ 393 (1167)
+ ++..-+ ..+++..++..|+..+...|+.++|..+.++++.. +.++++...
T Consensus 251 ~--------------------w~~lp~--------~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l 301 (398)
T PRK10747 251 W--------------------WKNQSR--------KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLL 301 (398)
T ss_pred H--------------------HHhCCH--------HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHH
Confidence 0 111100 12344678899999999999999999999999995 778888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
|+.+. .++.++++..+++.++.+ |+++.+++.++.+..+.+++++|+..|+++ ++..|++.. +..++.++.++|+
T Consensus 302 ~~~l~--~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~a-l~~~P~~~~-~~~La~~~~~~g~ 376 (398)
T PRK10747 302 IPRLK--TNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAA-LKQRPDAYD-YAWLADALDRLHK 376 (398)
T ss_pred Hhhcc--CCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCCHHH-HHHHHHHHHHcCC
Confidence 87753 488999999999999988 899999999999999999999999999998 788998654 5678889999999
Q ss_pred HHHHHHHHHHHHHhh
Q 001064 474 LEDAFSLYEQAIAIE 488 (1167)
Q Consensus 474 ~e~A~~~~~kAl~~~ 488 (1167)
.++|..+|++++...
T Consensus 377 ~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 377 PEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999865
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.9e-10 Score=129.13 Aligned_cols=269 Identities=12% Similarity=0.085 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCC--------------------------CChhhHHHHHHHHHHHHH
Q 001064 313 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP--------------------------LSVTELENWHNYLDFIER 366 (1167)
Q Consensus 313 ~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~p--------------------------ld~~~~~~W~~y~~~~e~ 366 (1167)
+++..+.+.+....++.+....++..++..-||... ..|...-.|...+-|+.-
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH
Confidence 344445555556667777777777776644444332 234455568888888888
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
.|.+.+|++.|-+|...++.+...|+.|+..+.-.+..|.|+..|.+|.++. +.+-.-.+..+.=+-+.++++-|...|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 8999999999999999999999999999999988899999999999999887 554444444454455688999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 447 QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 525 (1167)
Q Consensus 447 ~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ka 525 (1167)
.++ ..+.|.++-+..-.+.+....+.+.+|..+|+.++...+.... ......++..+|....+ .+.+++|...|+++
T Consensus 404 ~~A-~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-l~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 404 KQA-LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-LNKYEEAIDYYQKA 481 (611)
T ss_pred HHH-HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-HhhHHHHHHHHHHH
Confidence 998 7889999988887887777788999999999999965442111 11223467889988666 99999999999999
Q ss_pred HhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH-HHhhC
Q 001064 526 LDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF-LGLFG 593 (1167)
Q Consensus 526 l~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~f-e~~~G 593 (1167)
|.+.|.+...+-..+.+-.-+++ ++.+-..|.++|-..+++. -..+++...++- +...|
T Consensus 482 L~l~~k~~~~~asig~iy~llgn---ld~Aid~fhKaL~l~p~n~------~~~~lL~~aie~~~~~~~ 541 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGN---LDKAIDHFHKALALKPDNI------FISELLKLAIEDSECKSG 541 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCccH------HHHHHHHHHHHhhhhhcc
Confidence 99999999998866666655565 6668888999999888774 234567777666 44455
No 78
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.47 E-value=4.2e-13 Score=149.77 Aligned_cols=136 Identities=23% Similarity=0.377 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV-GSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 177 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~-~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~ 177 (1167)
.|..|.+.+.+. +.++.||++|+++++..+.+..+|..+|.+|... ++.+.|.+||+++|+.+|.+.++|+.|++|+
T Consensus 3 v~i~~m~~~~r~--~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRT--EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 689999998884 5799999999999976777899999999999985 5666699999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchh
Q 001064 178 INTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQ 237 (1167)
Q Consensus 178 ~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~ 237 (1167)
+ ..++.+.||.+|||++..++.+..+..||..|++||...|+++.++++++|+.+..+.
T Consensus 81 ~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 I-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp H-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred H-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9 6899999999999999988877656789999999999999999999999999986433
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.46 E-value=8.9e-12 Score=140.87 Aligned_cols=150 Identities=13% Similarity=-0.041 Sum_probs=126.0
Q ss_pred CCCchHHHHHHHHHHhCCC----CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSS----DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKV 152 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~----d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A 152 (1167)
...+.++.++.++|...|. ....|+.++..+..+ |+.++|+..|+++++.+|++..+|..++.++...|+++.|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL--GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4567889999999975553 366799999998875 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001064 153 VEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 232 (1167)
Q Consensus 153 ~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l 232 (1167)
+..|+++|++.|.+...|...+..+. ..|++++|.+.|+++++..|.++. ..+|.. +....+++++|...|.+.+
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~---l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDPY-RALWLY---LAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH---HHHccCCHHHHHHHHHHHH
Confidence 99999999999999999999998888 679999999999999997776531 134432 2234567888888887665
Q ss_pred h
Q 001064 233 E 233 (1167)
Q Consensus 233 ~ 233 (1167)
.
T Consensus 193 ~ 193 (296)
T PRK11189 193 E 193 (296)
T ss_pred h
Confidence 4
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.9e-11 Score=135.77 Aligned_cols=408 Identities=12% Similarity=0.041 Sum_probs=263.4
Q ss_pred CcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHH
Q 001064 40 SMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIR 119 (1167)
Q Consensus 40 ~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar 119 (1167)
...||.+.||..|..+++.+|....++.--..-+...+++++++.--.+.++++|+...+|..++..+.-+ |++++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l--g~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL--GDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc--ccHHHHH
Confidence 35799999999999999999998777655555566557899999999999999999999999999999875 8999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhC-----------------C-------HHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 120 RVYDAFLAEFPLCYGYWKKYADHEARVG-----------------S-------MDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 120 ~~ye~~l~~~P~~~~~W~~~a~~e~~~~-----------------~-------~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
..|.+.|+.+|+|..+.-.+++.+.-.. + .+.+.......+...|.++.+.+. -.
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~-d~ 169 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN-DP 169 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc-cH
Confidence 9999999999999988888888772110 0 011111222223333444444333 12
Q ss_pred HHHhhcCCHHH--HHHHHHHHHH--hcCCCCC----------CHH-----------HHHHHHHHHHHhhhHHHHHHHHHH
Q 001064 176 FAINTYGDPET--IRRLFERGLA--YVGTDYL----------SFP-----------LWDKYIEYEYMQQEWSRVAMIYTR 230 (1167)
Q Consensus 176 ~~~~~~~~~~~--Ar~~feral~--~~g~d~~----------s~~-----------lw~~y~~~e~~~~~~~~A~~iy~r 230 (1167)
.++...+..-. ....+..... ..+.++. ... -....+....+...+..+...|..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22211110000 0000000000 0000000 000 011111111122457777888888
Q ss_pred HHhcchhhHHHHHHHHHHHHhcCC-CcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001064 231 ILENPIQQLDRYFSSFKEFAASRP-LSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 309 (1167)
Q Consensus 231 ~l~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~ 309 (1167)
++++. .++..+-+....+..... ..-+...+.+ +++.. ....+..
T Consensus 250 a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a-----------------------------~E~gr----e~rad~k 295 (539)
T KOG0548|consen 250 ALELA-TDITYLNNIAAVYLERGKYAECIELCEKA-----------------------------VEVGR----ELRADYK 295 (539)
T ss_pred HHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHH-----------------------------HHHhH----HHHHHHH
Confidence 88776 444433332222211000 0000000000 00000 0001222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH
Q 001064 310 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE 389 (1167)
Q Consensus 310 ~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~ 389 (1167)
.+-+.+...+..|.+.+.++.++..|++++.- |.. -+.+.+....++++...++.....|.-.+
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte---~Rt-------------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~ 359 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTE---HRT-------------PDLLSKLKEAEKALKEAERKAYINPEKAE 359 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh---hcC-------------HHHHHHHHHHHHHHHHHHHHHhhChhHHH
Confidence 23344445566788889999999999998862 111 23334556677788888887777776665
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 469 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 469 (1167)
--..-+.-+.+.|++..|...|.+||... |+++.+|-..|..+.+.|++..|++-.+.+ ++++|+....|++-+.++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~-ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKC-IELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCchHHHHHHHHHHHHH
Confidence 55555777778899999999999999988 899999999999999999999999999998 8999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 470 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 470 r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
-+.++++|...|.++++.+|.+ -++...|.+..
T Consensus 438 ~mk~ydkAleay~eale~dp~~------~e~~~~~~rc~ 470 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSN------AEAIDGYRRCV 470 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchh------HHHHHHHHHHH
Confidence 9999999999999999998642 34555555543
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=1.5e-11 Score=133.21 Aligned_cols=197 Identities=13% Similarity=0.078 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 397 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~ 397 (1167)
+...|...+++++++..|+++++ .+|.+...|..++..+...|++++|+..|++++...|.+..+|..++.+
T Consensus 37 la~~~~~~~~~~~A~~~~~~~l~--------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDKALE--------HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 35577888999999999999987 6677788899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhh-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001064 398 MEASGSMDLAHNALARATHVFV-KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 476 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~-p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 476 (1167)
+...|++++|...|++++.... +....++..++.++...|++++|...|+++ +..+|++..+|..++.++...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA-LQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987431 345678888899999999999999999998 77899999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 477 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
|..++++++...+. .+..+...+.+... .|+.++|+.+++.+....|
T Consensus 188 A~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 188 ARAYLERYQQTYNQ------TAESLWLGIRIARA-LGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHhCCC------CHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhhCc
Confidence 99999999988532 24455566666555 8999999999888766543
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=2.5e-11 Score=131.48 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|..++..+...|++++|+..|++++...|.+...|..++.++...|++++|...|++++... |....++..++.++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 56788888888899999999999999999999999999999999999999999999999999987 77889999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 434 EQNGDIDGARAAYQLVHTET--SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~--~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
...|++++|...|+++ +.. .+.....|..++.++...|++++|...|++++...+. .+.++..++.+++.
T Consensus 110 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~- 181 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQA-IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ------RPESLLELAELYYL- 181 (234)
T ss_pred HHcccHHHHHHHHHHH-HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------ChHHHHHHHHHHHH-
Confidence 9999999999999998 443 2556678888999999999999999999999998764 25678888888776
Q ss_pred hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001064 512 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 563 (1167)
Q Consensus 512 ~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral 563 (1167)
.|++++|..+++++++..|.+...+...+.+....++ .+.++.+++.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHH
Confidence 9999999999999999988888777666666666555 344565555543
No 83
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6e-11 Score=134.55 Aligned_cols=359 Identities=14% Similarity=0.097 Sum_probs=229.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH-Hh-ccCCCHHHHHHHHHHHHhhcCC-HHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERA-VQ-GVTYSVDIWLHYCIFAINTYGD-PETIRR 189 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~era-L~-~~P~s~~lw~~ya~~~~~~~~~-~~~Ar~ 189 (1167)
++.++||..|..+|..++.|.+....+...++-.- .+...+|+.. +. ..-.+++....+-....-.+-+ ....|.
T Consensus 155 ~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~--~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~ 232 (611)
T KOG1173|consen 155 DNREEARDKYKEALLADAKCFEAFEKLVSAHMLTA--QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRN 232 (611)
T ss_pred ccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcch--hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccC
Confidence 67788899999999999999888888877766432 1122222210 00 0011222222222211100000 000000
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH-HHHHHHHHHHhcCCCcccccHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD-RYFSSFKEFAASRPLSELRTAEEVDAAA 268 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~ee~~~~~ 268 (1167)
-=+.. .+.. ++.+|-..-++......++..+.++...++++.|-+.. ..+...+-++.... ..+ ... .
T Consensus 233 ~~~sl---~~l~-~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~-n~L---f~l---s 301 (611)
T KOG1173|consen 233 EDESL---IGLA-ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKS-NKL---FLL---S 301 (611)
T ss_pred chhhh---hhhh-hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhccc-chH---HHH---H
Confidence 00111 1111 13456666666666677888888888888887444321 11111111111100 000 000 0
Q ss_pred HHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCC
Q 001064 269 VAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKP 348 (1167)
Q Consensus 269 ~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~p 348 (1167)
..+ ++..|.... . ++.+ +-.|.-.+++.+|++.|.++..
T Consensus 302 h~L----------------------V~~yP~~a~-------s---W~aV-g~YYl~i~k~seARry~SKat~-------- 340 (611)
T KOG1173|consen 302 HKL----------------------VDLYPSKAL-------S---WFAV-GCYYLMIGKYSEARRYFSKATT-------- 340 (611)
T ss_pred HHH----------------------HHhCCCCCc-------c---hhhH-HHHHHHhcCcHHHHHHHHHHhh--------
Confidence 000 001111100 0 2222 3456677899999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+|+.-...|..|+.-+--.++.+.|+.+|-+|-+..+....=.+-.+.=+...++++.|...|..|..++ |.+|-+...
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~E 419 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHE 419 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhh
Confidence 8999899999999988888999999999999999977544322333333445788999999999999999 899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhh---cCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTE---TSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~---~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
.+-+....+.+.+|...|+.++.. ..+.. ..+|..++...++++.+++|+..|+++|...|.+ +..+.
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~------~~~~a 493 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD------ASTHA 493 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc------hhHHH
Confidence 998888899999999999987422 12222 2347889999999999999999999999998643 66777
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
..|.+... .|+++.|...|.++|-+.|++.
T Consensus 494 sig~iy~l-lgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 494 SIGYIYHL-LGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHHHH-hcChHHHHHHHHHHHhcCCccH
Confidence 77777555 9999999999999999999985
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=2.1e-11 Score=124.48 Aligned_cols=183 Identities=14% Similarity=0.091 Sum_probs=159.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
...++--+.+.|++..|...++++|..+|.+...|.-.|.++...|..+.|.+.|++|+.+. |++.+++..|+.|++.+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 33444445688999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 437 GDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
|++++|...|+++ +. +|.. ...|...+.+..+.|+++.|+.+|+++|+++|+. |.....+++.++. .|
T Consensus 117 g~~~eA~q~F~~A-l~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~------~~~~l~~a~~~~~-~~ 187 (250)
T COG3063 117 GRPEEAMQQFERA-LA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF------PPALLELARLHYK-AG 187 (250)
T ss_pred CChHHHHHHHHHH-Hh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC------ChHHHHHHHHHHh-cc
Confidence 9999999999998 33 5554 4678888989999999999999999999999754 4567788899888 99
Q ss_pred CHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh
Q 001064 514 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 514 ~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~ 549 (1167)
++-.||-.+++-....+-....+.--+.|+...|+-
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccH
Confidence 999999999999887776665544667788777763
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.8e-09 Score=114.99 Aligned_cols=302 Identities=17% Similarity=0.198 Sum_probs=221.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH-HHHHHHHHHH
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD-RYFSSFKEFA 250 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~-~~~~~~~~~~ 250 (1167)
.=++|++ .+++|+|..+|-..++ .|+....+-..++.+..+.|+.++|++|-+.++..|....+ +++
T Consensus 41 ~GlNfLL--s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~l------- 108 (389)
T COG2956 41 KGLNFLL--SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLL------- 108 (389)
T ss_pred hHHHHHh--hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHH-------
Confidence 3346666 3678888888888888 56666778888888888889999998888888776554221 111
Q ss_pred hcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 251 ASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDS 330 (1167)
Q Consensus 251 ~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~ 330 (1167)
.+..+...|+..+-++.
T Consensus 109 ---------------------------------------------------------------Al~qL~~Dym~aGl~DR 125 (389)
T COG2956 109 ---------------------------------------------------------------ALQQLGRDYMAAGLLDR 125 (389)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHhhhhhH
Confidence 11222445666777777
Q ss_pred HHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHH
Q 001064 331 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP-----EYWIRYVLCMEASGSMD 405 (1167)
Q Consensus 331 a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~-----~~w~~ya~~l~~~g~~e 405 (1167)
|-..|...+..+- --......++..|....++++|+.+-++.....+..- .++..+|+-+....+.+
T Consensus 126 AE~~f~~L~de~e--------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 126 AEDIFNQLVDEGE--------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHHHHHHHhcchh--------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 7777777665221 1234567778888888888888888888877755432 36777887777778999
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-EAIIKHANMERRLGNLEDAFSLYEQA 484 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-~~~~~~a~~e~r~g~~e~A~~~~~kA 484 (1167)
.|+..+.+|++.. |++..+-+.+++++...|++..|.+.++++ ++-+|+.. ++...+...+..+|+.++.+..+.++
T Consensus 198 ~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v-~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 198 RARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERV-LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999987 899999999999999999999999999998 77788865 45666777888999999999999999
Q ss_pred HHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChh----HHHHHHHHHH
Q 001064 485 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK----QIDFLEQLVD 560 (1167)
Q Consensus 485 l~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~----~~~~ar~l~e 560 (1167)
++..++ +.+-..++++.....| .+.|..++.+-|...|+-..++ .++.+.+.-.++. ....+|++..
T Consensus 276 ~~~~~g-------~~~~l~l~~lie~~~G-~~~Aq~~l~~Ql~r~Pt~~gf~-rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 276 METNTG-------ADAELMLADLIELQEG-IDAAQAYLTRQLRRKPTMRGFH-RLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHccCC-------ccHHHHHHHHHHHhhC-hHHHHHHHHHHHhhCCcHHHHH-HHHHhhhccccccchhhhHHHHHHHHH
Confidence 998865 2233444555454345 8999999999999999755444 6666666554332 2455666666
Q ss_pred HHhhcCC
Q 001064 561 KFLMSNS 567 (1167)
Q Consensus 561 ral~~~~ 567 (1167)
+-+..++
T Consensus 347 e~l~~~~ 353 (389)
T COG2956 347 EQLRRKP 353 (389)
T ss_pred HHHhhcC
Confidence 6555544
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=1.9e-09 Score=126.59 Aligned_cols=417 Identities=12% Similarity=0.020 Sum_probs=280.2
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc--CCCHHHHHH
Q 001064 95 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV--TYSVDIWLH 172 (1167)
Q Consensus 95 ~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~--P~s~~lw~~ 172 (1167)
.|...|-.|.-.+.. -|++..+.+.||+++..-=...+.|..++.-+...|.-.+|..+.+.++... |.+.-..+.
T Consensus 321 nd~ai~d~Lt~al~~--~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSR--CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred chHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 455555555555554 3789999999999998777778999999999999999999999999999998 777778888
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhcCCC--CCCHHH----HHHHHHHHHHh-------hhHHHHHHHHHHHHhcchhhH
Q 001064 173 YCIFAINTYGDPETIRRLFERGLAYVGTD--YLSFPL----WDKYIEYEYMQ-------QEWSRVAMIYTRILENPIQQL 239 (1167)
Q Consensus 173 ya~~~~~~~~~~~~Ar~~feral~~~g~d--~~s~~l----w~~y~~~e~~~-------~~~~~A~~iy~r~l~~p~~~~ 239 (1167)
-.+.+++..+..+++...-.+++...+.. ...... -..|....... -.-.++...|++++++.+.|.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88888877888888888888888754321 011111 12222211111 124667888999999988888
Q ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHH
Q 001064 240 DRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVRE 319 (1167)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~ 319 (1167)
..+|...-.+...+.+.+... .+++. ... ...+.-.-|.+ ..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~-----~~~ea-L~l-----------------------------~~~~~~~~whL---LA 520 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALD-----YAREA-LAL-----------------------------NRGDSAKAWHL---LA 520 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHH-----HHHHH-HHh-----------------------------cCCccHHHHHH---HH
Confidence 888866555544332221110 00000 000 00011111223 23
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH--HH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV--LC 397 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya--~~ 397 (1167)
.++...+++..|+.+.+.++. .-+.|..+-.--+..+...+|.++++......|...-....+-.... ..
T Consensus 521 LvlSa~kr~~~Al~vvd~al~--------E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~ 592 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAALE--------EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKL 592 (799)
T ss_pred HHHhhhhhhHHHHHHHHHHHH--------HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhh
Confidence 467777888888888888776 44455555555566666667777777666665544221111111111 11
Q ss_pred HHH-------cCCHHHHHHHHHHHHHhhh------------c------c-------ChHHHHHHHHHHHHcCCHHHHHHH
Q 001064 398 MEA-------SGSMDLAHNALARATHVFV------------K------R-------LPEIHLFAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 398 l~~-------~g~~e~A~~vl~rA~~~~~------------p------~-------~~~l~~~~a~~~e~~g~~~~A~~~ 445 (1167)
+.. .++...|.+.+.++....- | . ...+|+..+.+..+.++.++|+.+
T Consensus 593 ~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~C 672 (799)
T KOG4162|consen 593 LRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSC 672 (799)
T ss_pred hhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 110 1122333333333322110 1 0 236888999999999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH--HHHHHHH
Q 001064 446 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE--KARQILV 523 (1167)
Q Consensus 446 ~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~--~Ar~i~~ 523 (1167)
+..+ ..++|-...+|+..+......|+.++|...|..|+.++|+. +.....+|.++.+ .|+.. ++|.++.
T Consensus 673 L~Ea-~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------v~s~~Ala~~lle-~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 673 LLEA-SKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------VPSMTALAELLLE-LGSPRLAEKRSLLS 744 (799)
T ss_pred HHHH-HhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHH-hCCcchHHHHHHHH
Confidence 9988 77899999999999999999999999999999999999753 4466778888776 77554 4555999
Q ss_pred HHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 524 DSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 524 kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.+++.+|.+...|..+...-...|+ .+.+-.||.-+++....+|
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd---~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGD---SKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccc---hHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999988887 5567889999988776665
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.41 E-value=5.7e-11 Score=134.28 Aligned_cols=219 Identities=9% Similarity=-0.021 Sum_probs=165.6
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 405 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~-~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e 405 (1167)
+.+.++..|.++|.+ .++++.+ ...|...+..+...|+.+.|+..|++++...|+++++|+.++.++...|+++
T Consensus 41 ~~e~~i~~~~~~l~~-----~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 41 QQEVILARLNQILAS-----RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred HHHHHHHHHHHHHcc-----ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 344455567777753 2355544 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 485 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl 485 (1167)
+|...|++++++. |++...|+..+.++...|++++|...|+++ ++++|++... ..|..+....+++++|...|++++
T Consensus 116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a-l~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAF-YQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999999987 889999999999999999999999999998 7889998732 222334456789999999998877
Q ss_pred HhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHH
Q 001064 486 AIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL-------DHVQLSKPLLEALIHFESIQSSPKQIDFLEQL 558 (1167)
Q Consensus 486 ~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal-------~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l 558 (1167)
...+. ..|. ++..... .|+..++ ..++.++ ++.|.....|..++......++ .+.+..+
T Consensus 193 ~~~~~--------~~~~-~~~~~~~-lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~---~~~A~~~ 258 (296)
T PRK11189 193 EKLDK--------EQWG-WNIVEFY-LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD---LDEAAAL 258 (296)
T ss_pred hhCCc--------cccH-HHHHHHH-ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 65421 1221 2222222 5655443 2334433 4445555667666776666666 6779999
Q ss_pred HHHHhhcCC
Q 001064 559 VDKFLMSNS 567 (1167)
Q Consensus 559 ~eral~~~~ 567 (1167)
|++++..++
T Consensus 259 ~~~Al~~~~ 267 (296)
T PRK11189 259 FKLALANNV 267 (296)
T ss_pred HHHHHHhCC
Confidence 999998765
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=1.8e-10 Score=135.02 Aligned_cols=396 Identities=13% Similarity=0.017 Sum_probs=272.5
Q ss_pred CCcCCcccccCCCCcccCCCC--CCCccCCCCcccccccC-CCCchHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhh
Q 001064 39 NSMNGNVVNEAGNATSTENGT--SLGIESGAAAGQELVDG-SAMSGEEDRLWNIVKAN-----SSDFSAWTALLEETEKL 110 (1167)
Q Consensus 39 ~~~~g~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~-~~~~~a~~~l~~~l~~n-----P~d~~aw~~L~~~~~~~ 110 (1167)
|+..|..-.|++-.+.-..+. |+.+-..+++.++..+. +-+++.++...+++..- -...-.+..++-.+..+
T Consensus 367 ~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~ 446 (799)
T KOG4162|consen 367 YSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQ 446 (799)
T ss_pred HHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhH
Confidence 344566667776555544444 44444566666666643 56677788888888722 11223333444433221
Q ss_pred h---------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHhh
Q 001064 111 A---------QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV-TYSVDIWLHYCIFAINT 180 (1167)
Q Consensus 111 ~---------~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~-P~s~~lw~~ya~~~~~~ 180 (1167)
. .....++.+.++++++.+|+|+..-+.++-.+.-+++++.|....+++|+.. -++...|..++-.+- .
T Consensus 447 A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS-a 525 (799)
T KOG4162|consen 447 ARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS-A 525 (799)
T ss_pred hhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh-h
Confidence 0 1233578899999999999999999999999999999999999999999994 478899988887776 7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCccccc
Q 001064 181 YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRT 260 (1167)
Q Consensus 181 ~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1167)
.+++..|..+.+.++.-.|.| ..+...=+.++...++.+++.......|. +|+.-..+.... +
T Consensus 526 ~kr~~~Al~vvd~al~E~~~N---~~l~~~~~~i~~~~~~~e~~l~t~~~~L~--------~we~~~~~q~~~--~---- 588 (799)
T KOG4162|consen 526 QKRLKEALDVVDAALEEFGDN---HVLMDGKIHIELTFNDREEALDTCIHKLA--------LWEAEYGVQQTL--D---- 588 (799)
T ss_pred hhhhHHHHHHHHHHHHHhhhh---hhhchhhhhhhhhcccHHHHHHHHHHHHH--------HHHhhhhHhhhh--h----
Confidence 789999999999999977765 45566666777777777777666655442 332111110000 0
Q ss_pred HHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001064 261 AEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIR 340 (1167)
Q Consensus 261 ~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~ 340 (1167)
+....+ ... ++.-. ....++....-+++..... . ......++..+
T Consensus 589 --~g~~~~-----lk~----------------~l~la----~~q~~~a~s~sr~ls~l~a--~-----~~~~~~se~~L- 633 (799)
T KOG4162|consen 589 --EGKLLR-----LKA----------------GLHLA----LSQPTDAISTSRYLSSLVA--S-----QLKSAGSELKL- 633 (799)
T ss_pred --hhhhhh-----hhc----------------ccccC----cccccccchhhHHHHHHHH--h-----hhhhccccccc-
Confidence 000000 000 00000 0011111111112211100 0 01112244443
Q ss_pred CCCcccCCCCh----hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 341 RPYFHVKPLSV----TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416 (1167)
Q Consensus 341 r~~~~v~pld~----~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~ 416 (1167)
|-+++.|-.. ....+|...++...+.+..+.+..+...+-..++.....|+..+..++..|..++|...|..|+.
T Consensus 634 -p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 -PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred -CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 4566666432 34567888888888889999999999999999999999999999999999999999999999999
Q ss_pred hhhccChHHHHHHHHHHHHcCCHHHHHH--HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 417 VFVKRLPEIHLFAARFKEQNGDIDGARA--AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 417 ~~~p~~~~l~~~~a~~~e~~g~~~~A~~--~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
+. |+++.+....|.++.+.|+..-|.+ ++..+ ++++|.+.++|+..+.+...+|+.++|-.+|.-|++++..
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~da-lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDA-LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 88 8999999999999999886555544 88887 8999999999999999999999999999999999999864
No 89
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=5.5e-13 Score=121.24 Aligned_cols=79 Identities=25% Similarity=0.313 Sum_probs=71.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+++||||||++.++|+.|.++|++||+|+.| |+--|+.+..+.||+||+|-+.++|..|+.- +|+.++.+.|+|++.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irri-iMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRI-IMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchhee-EeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999999999999999999999996 3444666667889999999999999999998 899999999999976
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=1.6e-10 Score=137.77 Aligned_cols=154 Identities=15% Similarity=0.095 Sum_probs=129.5
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001064 78 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE 157 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~e 157 (1167)
....++..|-+++++++.-.-+|..|+.++... .+..+|+++|+++.++++.+...|...++.+....+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 456778899999999999999999999999985 488899999999999999999999999999999999999998865
Q ss_pred HHHhccC--CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001064 158 RAVQGVT--YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP 235 (1167)
Q Consensus 158 raL~~~P--~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p 235 (1167)
+.-+..| ....-|.+..-++. ..++.-.+..-|+.++. .+|.+..+|..++....+.|++..|.++|.|+..+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyL-ea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYL-EAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHhhhchHHHHHhhhhhcccccc-CccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 5555443 24566777666666 46778888889999998 555567889999999999999999999999998875
Q ss_pred hh
Q 001064 236 IQ 237 (1167)
Q Consensus 236 ~~ 237 (1167)
|.
T Consensus 627 P~ 628 (1238)
T KOG1127|consen 627 PL 628 (1238)
T ss_pred cH
Confidence 54
No 91
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.40 E-value=2.4e-12 Score=153.27 Aligned_cols=74 Identities=34% Similarity=0.481 Sum_probs=66.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcC--CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNF--GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++|||+||+.++|+++|+++|++| |.|++|++ .++||||+|++.++|.+||+. |+..|+|+.|+|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~---------~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK---------IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe---------ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4789999999999999999999999 99998653 246999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.40 E-value=7.1e-10 Score=118.19 Aligned_cols=330 Identities=9% Similarity=0.024 Sum_probs=196.0
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
.+|.|++-+++|+..+.. .+.+..|...|-.+++.+|+++.+.++-+..+...|.-.-|+.=+.|.|.+.|+-....+
T Consensus 33 ~~~advekhlElGk~lla--~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLA--RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 467888888888887765 378888999999999999999988888888898888888888888888888887766666
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAA 251 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~ 251 (1167)
.-+..++ ..|.++.|..-|...|+..+.+-.+ .+ .+.++. ..+..|.
T Consensus 111 QRg~vll-K~Gele~A~~DF~~vl~~~~s~~~~-----------------~e---aqskl~-----~~~e~~~------- 157 (504)
T KOG0624|consen 111 QRGVVLL-KQGELEQAEADFDQVLQHEPSNGLV-----------------LE---AQSKLA-----LIQEHWV------- 157 (504)
T ss_pred Hhchhhh-hcccHHHHHHHHHHHHhcCCCcchh-----------------HH---HHHHHH-----hHHHHHH-------
Confidence 6666666 5677777777777777644332000 00 011100 0011110
Q ss_pred cCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 252 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSK 331 (1167)
Q Consensus 252 ~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a 331 (1167)
++.. ..-+...++...+
T Consensus 158 --------------------------------------------------------------l~~q-l~s~~~~GD~~~a 174 (504)
T KOG0624|consen 158 --------------------------------------------------------------LVQQ-LKSASGSGDCQNA 174 (504)
T ss_pred --------------------------------------------------------------HHHH-HHHHhcCCchhhH
Confidence 0000 0011222334444
Q ss_pred HHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 332 IIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNAL 411 (1167)
Q Consensus 332 ~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl 411 (1167)
|......|+ +.|=...+...-++++...|++..|+.-++.+-+..-++.+..+....++...|+.+.++...
T Consensus 175 i~~i~~llE--------i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 175 IEMITHLLE--------IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred HHHHHHHHh--------cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 444555554 333334445555666666677777777777777666666677777777776777777777777
Q ss_pred HHHHHhhhccChHHHHHHHH------------HHHHcCCHHHHHHHHHHHhhhcCCChHHHH----HHHHHHHHHcCCHH
Q 001064 412 ARATHVFVKRLPEIHLFAAR------------FKEQNGDIDGARAAYQLVHTETSPGLLEAI----IKHANMERRLGNLE 475 (1167)
Q Consensus 412 ~rA~~~~~p~~~~l~~~~a~------------~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~----~~~a~~e~r~g~~e 475 (1167)
+.++++. |+....+-+|-. -..+.+++.+++..+++. ++.+|....+. .........-+++-
T Consensus 247 RECLKld-pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~v-lk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 247 RECLKLD-PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKV-LKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHHccC-cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCCcccceeeeeeheeeecccccCCHH
Confidence 7777665 444333333221 123345555566666665 45566544332 22223334446666
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHH
Q 001064 476 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 476 ~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
+|+....++|...|.+ ..++..-+..+.. ...|+.|+.-|++|+++++++...-
T Consensus 325 eAiqqC~evL~~d~~d------v~~l~dRAeA~l~-dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 325 EAIQQCKEVLDIDPDD------VQVLCDRAEAYLG-DEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHHHHHhcCchH------HHHHHHHHHHHhh-hHHHHHHHHHHHHHHhcCcccHHHH
Confidence 6666666666666422 3455555554333 4456667777777776666665444
No 93
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=3.5e-12 Score=144.81 Aligned_cols=83 Identities=25% Similarity=0.397 Sum_probs=75.3
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
.....++|||+|||+++|+++|+++|+.||.|++|+| +++..+++++|||||+|.+.++|++||+. ++..|.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i-~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRI-MRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3446799999999999999999999999999999986 66888999999999999999999999976 899999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 87653
No 94
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=2e-09 Score=127.15 Aligned_cols=394 Identities=13% Similarity=0.150 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh--hcCCHHHHHHHHHH
Q 001064 116 VKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAIN--TYGDPETIRRLFER 193 (1167)
Q Consensus 116 ~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~--~~~~~~~Ar~~fer 193 (1167)
+.-+..++.-+..++.++.....|+.+..+.|++++.+..=..+..+.|.+..+|+.|+.-+.. ..++...+..+|++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 3344556777777888888888889999999999999999999999999999999999986653 23566788899999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCCcccccHHH
Q 001064 194 GLAYVGTDYLSFPLWDKYIEYEYMQ-------QEWSRVAMIYTRILENPIQ---QLDRYFSSFKEFAASRPLSELRTAEE 263 (1167)
Q Consensus 194 al~~~g~d~~s~~lw~~y~~~e~~~-------~~~~~A~~iy~r~l~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~ee 263 (1167)
+|. |+.+..||..|+.|.... +.++..|-+|.++|..-.. .-..+|..|.+|+..
T Consensus 176 al~----dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~----------- 240 (881)
T KOG0128|consen 176 ALG----DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVT----------- 240 (881)
T ss_pred Hhc----ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHH-----------
Confidence 994 778899999999999875 4578899999999875222 224455445444221
Q ss_pred HHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001064 264 VDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPY 343 (1167)
Q Consensus 264 ~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~ 343 (1167)
|..+.+.++.+..|...+..|+
T Consensus 241 ----------------------------------------------------------~l~n~~~~qv~a~~~~el~~~~ 262 (881)
T KOG0128|consen 241 ----------------------------------------------------------YLCNVEQRQVIALFVRELKQPL 262 (881)
T ss_pred ----------------------------------------------------------HHHhHHHHHHHHHHHHHHhccc
Confidence 1112222333334455544332
Q ss_pred cccCCCChhhHHHHH--HHHHHHH-----HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 344 FHVKPLSVTELENWH--NYLDFIE-----RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416 (1167)
Q Consensus 344 ~~v~pld~~~~~~W~--~y~~~~e-----~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~ 416 (1167)
++-. --.++.-|. .+.+.+. ...+..+.+..+++.+...+....-|+.|+.+....|+.-.-..+++|++.
T Consensus 263 D~~~--~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 263 DEDT--RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred hhhh--hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 2100 011122222 1111111 111233456667777777777777899999999999998888889999988
Q ss_pred hhhccChHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhCCCcc
Q 001064 417 VFVKRLPEIHLFAARFKEQ-NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN-LEDAFSLYEQAIAIEKGKEHS 494 (1167)
Q Consensus 417 ~~~p~~~~l~~~~a~~~e~-~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~-~e~A~~~~~kAl~~~~~~~~~ 494 (1167)
-. +....+|+.|+.++-. .+-.+.+..++-++ ++.+|-...+|-++...+.|.+. .......+++++..-
T Consensus 341 E~-~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra-~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~------ 412 (881)
T KOG0128|consen 341 EM-VLDRALWIGYGVYLDTELKVPQRGVSVHPRA-VRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT------ 412 (881)
T ss_pred hc-cccHHHHhhhhhhcccccccccccccccchh-hcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH------
Confidence 66 5679999999877643 44445567778887 78889888999887755555443 445556677776653
Q ss_pred CchHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHhhc----CC----CHHHHHHHHHhHhhCCChhHHHHHHHHHHH
Q 001064 495 QTLPMLYAQYSRFLHLV-----SRNAEKARQILVDSLDHV----QL----SKPLLEALIHFESIQSSPKQIDFLEQLVDK 561 (1167)
Q Consensus 495 ~~~~~l~~~~a~~~~~~-----~g~~~~Ar~i~~kal~~~----p~----~~~l~~~~~~~e~~~~~~~~~~~ar~l~er 561 (1167)
..++..|..+..+. ..+++.-|+.|..|.... .+ ...++..++.+|.++.. +.+..|.++..
T Consensus 413 ---~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~--nmd~~R~iWn~ 487 (881)
T KOG0128|consen 413 ---VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLK--NMDKAREIWNF 487 (881)
T ss_pred ---HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh--chhhhhHhhhc
Confidence 12333333332221 224566667777776531 11 23566688999988642 26778999988
Q ss_pred HhhcCCCCCCCCCHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001064 562 FLMSNSDSPSTANAAEREE-LSCVFLEFLGLFGDAQLIKKAEDRHA 606 (1167)
Q Consensus 562 al~~~~~~~~~l~~~~~~~-i~~~~l~fe~~~Gd~~~~~~v~~r~~ 606 (1167)
.+..... +.. .|..|+..|..||+..++++++.+..
T Consensus 488 imty~~~---------~iag~Wle~~~lE~~~g~~~~~R~~~R~ay 524 (881)
T KOG0128|consen 488 IMTYGGG---------SIAGKWLEAINLEREYGDGPSARKVLRKAY 524 (881)
T ss_pred cccCCcc---------hHHHHHHHHHhHHHHhCCchhHHHHHHHHH
Confidence 7776432 223 79999999999999999999655543
No 95
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=1.7e-12 Score=131.31 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=73.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
|..-++||||||+|.++.+.|+++|++||+|.+..| |.|+.+|++||||||+|.|.++|.+|++.....|+||+..+..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavv-itd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVV-ITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEE-EeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccch
Confidence 445689999999999999999999999999999854 7799999999999999999999999999878899999988875
Q ss_pred c
Q 001064 1108 R 1108 (1167)
Q Consensus 1108 ~ 1108 (1167)
+
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 4
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=3.8e-11 Score=136.97 Aligned_cols=232 Identities=12% Similarity=0.152 Sum_probs=158.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 191 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~f 191 (1167)
.|++.+|.-+||.++..+|.+.++|..++......++-..|+..++|||++.|++.++...++--+. ..+.-..|...+
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt-Neg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT-NEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh-hhhhHHHHHHHH
Confidence 4778888889999999999999999999988888888888999999999999999888888777666 445566788888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHh
Q 001064 192 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV 271 (1167)
Q Consensus 192 eral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~ 271 (1167)
++.|...+.. .|..-.. ..+.+..- ... .....+..+-..|.......+
T Consensus 377 ~~Wi~~~p~y-----~~l~~a~---~~~~~~~~----~s~--~~~~~l~~i~~~fLeaa~~~~----------------- 425 (579)
T KOG1125|consen 377 DKWIRNKPKY-----VHLVSAG---ENEDFENT----KSF--LDSSHLAHIQELFLEAARQLP----------------- 425 (579)
T ss_pred HHHHHhCccc-----hhccccC---ccccccCC----cCC--CCHHHHHHHHHHHHHHHHhCC-----------------
Confidence 8888743321 1111100 00000000 000 000001111111111100000
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCh
Q 001064 272 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 351 (1167)
Q Consensus 272 ~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~ 351 (1167)
.+ ++ . ++-..++.+|.-.++|++++..|+.+|. .+|
T Consensus 426 ----~~-------~D---------------------p----dvQ~~LGVLy~ls~efdraiDcf~~AL~--------v~P 461 (579)
T KOG1125|consen 426 ----TK-------ID---------------------P----DVQSGLGVLYNLSGEFDRAVDCFEAALQ--------VKP 461 (579)
T ss_pred ----CC-------CC---------------------h----hHHhhhHHHHhcchHHHHHHHHHHHHHh--------cCC
Confidence 00 00 0 0223335578888899999999999987 777
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 352 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV 419 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~ 419 (1167)
++..+|.+|+..+-...+.++|+..|.|||.+-|.+..+|+.++......|.+++|...|-+||.+..
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 88889999998888888888999999999999999999999999888888999999999988888774
No 97
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.35 E-value=7.1e-09 Score=119.69 Aligned_cols=393 Identities=11% Similarity=0.106 Sum_probs=215.0
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
++|.+-++.++++|+..|...+..-..|-.+-.+ |+.++|-..-...+.-++.+.--|.-++-+....++|++|+++|
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~l--g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCL--GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcc--cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 5666666777777777777777666666666554 56666666666777777666666777777777777777777777
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc-
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP- 235 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p- 235 (1167)
+.||+..|+|..+|..++-+-. +.++++.....-.+.++..+. ...-|..|+.-....+++..|..|.+...+.-
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~-QmRd~~~~~~tr~~LLql~~~---~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQI-QMRDYEGYLETRNQLLQLRPS---QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777777777777776665555 566666666665556654333 24556666665555566666665555544421
Q ss_pred --hhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 236 --IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
+...+.-+.+...+.+.. .-+....+++. .....++. ....-..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i-~~E~g~~q~al--------------e~L~~~e~-------------------~i~Dkla 220 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQI-LIEAGSLQKAL--------------EHLLDNEK-------------------QIVDKLA 220 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHH-HHHcccHHHHH--------------HHHHhhhh-------------------HHHHHHH
Confidence 221111111111110000 00000000000 00000000 0001112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhcCCC-----
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE-RDGDFNKVVKLYERCLIACANY----- 387 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e-~~g~~~~a~~~yeral~~~p~~----- 387 (1167)
+...++.++.+.+++++|+..|...|. .+|++++.+..|...+- -.+..+....+|.+.-...|..
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~--------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLE--------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHh--------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh
Confidence 455667788899999999999999988 46666655555544432 2222333335565543332211
Q ss_pred --------HHHHHHHHHHHH---HcC-------------CHHHHHHHHHHHHHhhh------------------ccChHH
Q 001064 388 --------PEYWIRYVLCME---ASG-------------SMDLAHNALARATHVFV------------------KRLPEI 425 (1167)
Q Consensus 388 --------~~~w~~ya~~l~---~~g-------------~~e~A~~vl~rA~~~~~------------------p~~~~l 425 (1167)
.++-..+-.++. +.| +.... .++++.+..+. |-.+.+
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 111111111111 111 11111 13333332221 011233
Q ss_pred HHH--HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001064 426 HLF--AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 503 (1167)
Q Consensus 426 ~~~--~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~ 503 (1167)
|.. .+.-.-..|+++.|...++.+ +.-.|..++.++..+.+..-.|++++|-.++++|.+++..+ -.|--+
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~A-IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD------R~INsK 444 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLA-IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD------RAINSK 444 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh------HHHHHH
Confidence 433 344445678888888888887 66778888888888888888888888888888887776321 112235
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q 001064 504 YSRFLHLVSRNAEKARQILVDSL 526 (1167)
Q Consensus 504 ~a~~~~~~~g~~~~Ar~i~~kal 526 (1167)
.+.+..+ .+++++|.++..+--
T Consensus 445 cAKYmLr-An~i~eA~~~~skFT 466 (700)
T KOG1156|consen 445 CAKYMLR-ANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHH-ccccHHHHHHHHHhh
Confidence 6777666 777888877766543
No 98
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.5e-10 Score=122.46 Aligned_cols=312 Identities=10% Similarity=0.039 Sum_probs=237.6
Q ss_pred HHhCCCCHHHHH---HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 90 VKANSSDFSAWT---ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 90 l~~nP~d~~aw~---~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
+...|.+.+.|. .+++.+.. .....-+..++-..+..+|+|..+.-.+++++...|+++.|+..|++++.++|+.
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~--~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~ 265 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNF--KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN 265 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhc--ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh
Confidence 344566655555 33333332 2233445667778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHH
Q 001064 167 VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF 246 (1167)
Q Consensus 167 ~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~ 246 (1167)
+.---.|+-++- ..|+++..-.+..+.+.....+ ..=|..-+..+...+++.+|.-.=.+++...+.+...+.-.
T Consensus 266 i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~~~t---a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilK- 340 (564)
T KOG1174|consen 266 VEAMDLYAVLLG-QEGGCEQDSALMDYLFAKVKYT---ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILK- 340 (564)
T ss_pred hhhHHHHHHHHH-hccCHhhHHHHHHHHHhhhhcc---hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhc-
Confidence 999999988887 7899998888888777643221 23455555545555667777666666666655554444311
Q ss_pred HHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH
Q 001064 247 KEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK 326 (1167)
Q Consensus 247 ~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~ 326 (1167)
+......+
T Consensus 341 ------------------------------------------------------------------------G~lL~~~~ 348 (564)
T KOG1174|consen 341 ------------------------------------------------------------------------GRLLIALE 348 (564)
T ss_pred ------------------------------------------------------------------------cHHHHhcc
Confidence 23345667
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH-HHH-HHcCCH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV-LCM-EASGSM 404 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya-~~l-~~~g~~ 404 (1167)
+.++|+..|..++. +-|..++.+.-++..|...|.+.+|+.+-..++...+.+.....-++ ..+ ....--
T Consensus 349 R~~~A~IaFR~Aq~--------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQM--------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred chHHHHHHHHHHHh--------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence 77888889999987 77888999999999999999999999999999988888877666553 222 222345
Q ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 405 DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 484 (1167)
Q Consensus 405 e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kA 484 (1167)
++|.+.|++++.+. |.....-...|.++...|.+..+.+++++. +...|+ ..++..++++....+.+.++.+.|..|
T Consensus 421 EKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~-L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKH-LIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHH-Hhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 78999999999987 788888888899999999999999999997 554554 567788889998899999999999999
Q ss_pred HHhhhCC
Q 001064 485 IAIEKGK 491 (1167)
Q Consensus 485 l~~~~~~ 491 (1167)
|.++|++
T Consensus 498 Lr~dP~~ 504 (564)
T KOG1174|consen 498 LRQDPKS 504 (564)
T ss_pred HhcCccc
Confidence 9999754
No 99
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=3.2e-11 Score=127.51 Aligned_cols=192 Identities=15% Similarity=0.185 Sum_probs=126.9
Q ss_pred cccccCC-cCCcccccCCCCcccCCCCCCC--ccC--CCCcccccccCCCCchHHHHHHHHHHhCCC-------CHHHHH
Q 001064 34 QAAGYNS-MNGNVVNEAGNATSTENGTSLG--IES--GAAAGQELVDGSAMSGEEDRLWNIVKANSS-------DFSAWT 101 (1167)
Q Consensus 34 ~~~~~~~-~~g~~~~~~~~~~~v~~~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~-------d~~aw~ 101 (1167)
+.....| ..|..++|+.-.+.+...-+-. ..+ .+-..+.... .+ -.|-++-++||. -..+.+
T Consensus 112 ~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~---~d---G~f~nlsRLN~tkYa~~p~l~kaLF 185 (478)
T KOG1129|consen 112 SRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAF---ND---GKFYNLSRLNPTKYAERPTLVKALF 185 (478)
T ss_pred cCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhcc---CC---cceeehhhcCchhhccChHHHHHHH
Confidence 3445545 6788888886555544433211 111 1111111111 00 123344444544 445555
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhC---CC----C-H-HHHH-HHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEF---PL----C-Y-GYWK-KYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~---P~----~-~-~~W~-~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
+++-+++ +++.+|.......++.. |. + . .+|+ .+++.+.+.|-+.+|++-|+..|+.. ..+|-++
T Consensus 186 ey~fyhe----nDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-~~~dTfl 260 (478)
T KOG1129|consen 186 EYLFYHE----NDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPDTFL 260 (478)
T ss_pred HHHHHhh----hhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-CchhHHH
Confidence 6665554 58888887766666553 21 2 2 3444 46888999999999999999999988 4678888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD 240 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~ 240 (1167)
.+.+.+. ..+.+..|..+|..+|+..|.| ..+...-+++.+..++.+.+.++|+++++..+.|++
T Consensus 261 lLskvY~-ridQP~~AL~~~~~gld~fP~~---VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 261 LLSKVYQ-RIDQPERALLVIGEGLDSFPFD---VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred HHHHHHH-HhccHHHHHHHHhhhhhcCCch---hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence 8888888 6789999999999999987765 556666777777788889999999998887666554
No 100
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.34 E-value=7.8e-12 Score=145.75 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=76.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..+++|||+|||+++++++|+++|++||.|.+|+| ++++.+|++||||||+|.+.++|.+||.. ||..|+||.|+|++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i-~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKI-IRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-eEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35689999999999999999999999999999986 66788999999999999999999999986 89999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
+..+.
T Consensus 346 ~~~~~ 350 (352)
T TIGR01661 346 KTNKA 350 (352)
T ss_pred ccCCC
Confidence 87653
No 101
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.34 E-value=6.7e-12 Score=123.59 Aligned_cols=79 Identities=25% Similarity=0.406 Sum_probs=73.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
-.+|-|-||.+.++.++|+.+|++||.|-+|.| -+|+.|+.++|||||-|.+..+|+.|+++ +|.+|+|+.|+|..++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyI-Prdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYI-PRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceec-ccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 478999999999999999999999999999865 56888999999999999999999999988 7999999999999876
Q ss_pred C
Q 001064 1110 P 1110 (1167)
Q Consensus 1110 ~ 1110 (1167)
=
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 102
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.2e-11 Score=130.20 Aligned_cols=79 Identities=18% Similarity=0.337 Sum_probs=70.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|+|.|||+...+.||+.+|.+||+|.+|.|+.-++ | +||||||+|++.++|++|-++ +|..|.||+|.|..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--G-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--G-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--C-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 458999999999999999999999999999998755333 3 799999999999999999987 899999999999877
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
..|
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 543
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.29 E-value=3.4e-09 Score=126.67 Aligned_cols=182 Identities=12% Similarity=0.009 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 370 FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 370 ~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
...+..+|-|++..++.....|..+++++....++..|..+|.+|.++. +.....+-..++.+.+..+.++|..+.-++
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4456777777888888888888888888876667778888888888876 677777777888887888888888775554
Q ss_pred hhhcCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 001064 450 HTETSPGLL--EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLD 527 (1167)
Q Consensus 450 ~~~~~P~~~--~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~ 527 (1167)
.+..|... ..|..++-++...+++..++..|+.|+..+|.+ -..|..+|..+.. .|++..|.++|.||..
T Consensus 553 -~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~-sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 553 -AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPE-SGRYSHALKVFTKASL 624 (1238)
T ss_pred -hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHh-cCceehHHHhhhhhHh
Confidence 34444332 347778888888889999999999999988643 5689999999665 9999999999999999
Q ss_pred hcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001064 528 HVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 563 (1167)
Q Consensus 528 ~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral 563 (1167)
++|.+......-+.++...|. .+.+...++..+
T Consensus 625 LrP~s~y~~fk~A~~ecd~Gk---Ykeald~l~~ii 657 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGK---YKEALDALGLII 657 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhh---HHHHHHHHHHHH
Confidence 999987666556666665543 333444444433
No 104
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=3.2e-08 Score=114.39 Aligned_cols=406 Identities=11% Similarity=0.081 Sum_probs=238.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY 181 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~ 181 (1167)
..+..++. +.+.+..++.+..|+.||..++-.-..+-.+...|+.++|-...+++|..++.|.--|.-|+-+.. ..
T Consensus 13 ~~lk~yE~---kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~d 88 (700)
T KOG1156|consen 13 RALKCYET---KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SD 88 (700)
T ss_pred HHHHHHHH---HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hh
Confidence 44555664 689999999999999999999999889999999999999999999999999999999999988888 66
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccH
Q 001064 182 GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTA 261 (1167)
Q Consensus 182 ~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (1167)
.++++|+..|..||...+. .-.||.++..+-...+.++.....-.+.|+..+.+...|+........... .
T Consensus 89 K~Y~eaiKcy~nAl~~~~d---N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~------y 159 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKD---NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE------Y 159 (700)
T ss_pred hhHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH------H
Confidence 8999999999999995544 589999999988888999999888889999877655444422211100000 0
Q ss_pred HHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001064 262 EEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK--YIAVREEMYKKAKEFDSKIIGFETAI 339 (1167)
Q Consensus 262 ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~--~i~~~~~~y~~~~~~~~a~~~~e~al 339 (1167)
..+. ..+.+... ..+ ...+...++. .+..+..+..+++.+.+++..+.+.-
T Consensus 160 ~~A~-------~il~ef~~---t~~-----------------~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 160 KMAL-------EILEEFEK---TQN-----------------TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHH-------HHHHHHHH---hhc-----------------cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 0000 00000000 000 0011111111 11112223333444444443332211
Q ss_pred cCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q 001064 340 RRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME-ASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 340 ~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~-~~g~~e~A~~vl~rA~~~~ 418 (1167)
+ .--+.+..-..-++++.+.+++++|..+|.+.+..+|++.+.+..+-.++. -.+..+....+|...-+.+
T Consensus 213 ~--------~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 213 K--------QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred h--------HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 1 111223334445778889999999999999999999999888887777664 2333333336666665554
Q ss_pred hccChHHHHHHHHHHHHcCCHHHH-HHHHHHHhhhcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhh-----
Q 001064 419 VKRLPEIHLFAARFKEQNGDIDGA-RAAYQLVHTETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQAIAIEK----- 489 (1167)
Q Consensus 419 ~p~~~~l~~~~a~~~e~~g~~~~A-~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g---~~e~A~~~~~kAl~~~~----- 489 (1167)
|...-+...--.++.- .++... ..++...+..-.|. +......++..-. =+++-..-|...+.-..
T Consensus 285 -~r~e~p~Rlplsvl~~-eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 285 -PRHECPRRLPLSVLNG-EELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -cccccchhccHHHhCc-chhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 4332222222222211 122222 22222221111121 1111111211100 01222222222222110
Q ss_pred --CCCccCchHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001064 490 --GKEHSQTLPMLYAQY--SRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 565 (1167)
Q Consensus 490 --~~~~~~~~~~l~~~~--a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~ 565 (1167)
+.. .+-...+|..| +.- +...|+++.|..++..|+.+.|.-.+++..-+++-...|+ ++.+-.+++++...
T Consensus 360 D~~~~-E~PttllWt~y~laqh-~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~---l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 360 DDGKQ-EPPTTLLWTLYFLAQH-YDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGL---LDEAAAWLDEAQEL 434 (700)
T ss_pred ccccc-CCchHHHHHHHHHHHH-HHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhc
Confidence 000 11123355332 333 2348999999999999999999988888777777766666 56677777777554
No 105
>PLN02789 farnesyltranstransferase
Probab=99.28 E-value=1.3e-09 Score=123.12 Aligned_cols=220 Identities=11% Similarity=0.040 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCC
Q 001064 309 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACANY 387 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g-~~~~a~~~yeral~~~p~~ 387 (1167)
++..+.+.....++...+..++|+..++++|+ ++|.+..+|......+...+ ++++++..+++++..+|.+
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~--------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn 105 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIR--------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN 105 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc
Confidence 45556666667788888899999999999998 89999999999988888887 6799999999999999999
Q ss_pred HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 388 PEYWIRYVLCMEASGSM--DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~--e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
..+|...+.++...+.. ++++..+++++++. |++..+|...+-++...|+++++++.++++ ++++|.+..+|..+.
T Consensus 106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~-I~~d~~N~sAW~~R~ 183 (320)
T PLN02789 106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQL-LEEDVRNNSAWNQRY 183 (320)
T ss_pred hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHCCCchhHHHHHH
Confidence 99999998888887763 67899999999988 899999999999999999999999999998 788999999999998
Q ss_pred HHHHHc---CCH----HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhhcCCCHHH
Q 001064 466 NMERRL---GNL----EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLDHVQLSKPL 535 (1167)
Q Consensus 466 ~~e~r~---g~~----e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~~~Ar~i~~kal~~~p~~~~l 535 (1167)
.+..+. |++ ++...+..++|...|.+ ..+|..+..++... .++..+|...+.++++..|.+...
T Consensus 184 ~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~a 257 (320)
T PLN02789 184 FVITRSPLLGGLEAMRDSELKYTIDAILANPRN------ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFA 257 (320)
T ss_pred HHHHhccccccccccHHHHHHHHHHHHHhCCCC------cCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHH
Confidence 777665 333 57888888999999865 34776666664431 245577999999999988998877
Q ss_pred HHHHHHhHh
Q 001064 536 LEALIHFES 544 (1167)
Q Consensus 536 ~~~~~~~e~ 544 (1167)
+..++++-.
T Consensus 258 l~~l~d~~~ 266 (320)
T PLN02789 258 LSDLLDLLC 266 (320)
T ss_pred HHHHHHHHH
Confidence 776666554
No 106
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.3e-11 Score=122.36 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=76.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+..+|-|.||+.++++++|+++|.+||.|.+|.+ .+|+.||.+||||||.|.+.++|.+||.. ||+-++.-.|+||++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyl-ardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYL-ARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEE-EEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 5688999999999999999999999999999864 88999999999999999999999999987 899999999999999
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 985
No 107
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.25 E-value=2.3e-11 Score=105.47 Aligned_cols=69 Identities=35% Similarity=0.566 Sum_probs=62.7
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1034 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
|||+|||.++|+++|+++|++||.|..+.+.. + .+++.+|||||+|.+.++|++|++. +|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~-~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMR-N-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEE-E-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccc-c-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999876533 3 6678999999999999999999985 99999999885
No 108
>PLN02789 farnesyltranstransferase
Probab=99.24 E-value=3.1e-09 Score=120.09 Aligned_cols=201 Identities=11% Similarity=0.047 Sum_probs=160.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCH
Q 001064 361 LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDI 439 (1167)
Q Consensus 361 ~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g-~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~ 439 (1167)
-..+...+..++|+.+++++|..+|.+..+|...+.++...+ ++++++..++++++.+ |++..+|...+.++...|+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 334456778999999999999999999999999999999888 5799999999999988 88999999999888888863
Q ss_pred --HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---CC
Q 001064 440 --DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS---RN 514 (1167)
Q Consensus 440 --~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~---g~ 514 (1167)
++++.+++++ ++++|++..+|..++.+..++|++++++..++++|+.++.+ ..+|.+.+.++.. . |+
T Consensus 123 ~~~~el~~~~ka-l~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~-~~~l~~ 194 (320)
T PLN02789 123 AANKELEFTRKI-LSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITR-SPLLGG 194 (320)
T ss_pred hhHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHh-cccccc
Confidence 6789999998 78999999999999999999999999999999999998654 4578777655443 3 22
Q ss_pred ----HHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh-hHHHHHHHHHHHHhhcCCCCC
Q 001064 515 ----AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP-KQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 515 ----~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~-~~~~~ar~l~eral~~~~~~~ 570 (1167)
.+++..+..++|+.+|++...|..+..+....+.. .....+...+++++...+.+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 35788888999999999999997555555442221 111225555666666554433
No 109
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.1e-10 Score=123.51 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=109.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY 181 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~ 181 (1167)
.+++.+..+ +-..+|.+.++..|+.+|. ++.++.+.+.|.+.++.+.|..+|...|..+|.++.+..--+++.. ..
T Consensus 228 Q~gkCylrL--gm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e-am 303 (478)
T KOG1129|consen 228 QMGKCYLRL--GMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE-AM 303 (478)
T ss_pred HHHHHHHHh--cChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH-HH
Confidence 788888886 6889999999999999997 4778889999999999999999999999999999999999998887 67
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhH
Q 001064 182 GDPETIRRLFERGLAYVGTDYLSF-PLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQL 239 (1167)
Q Consensus 182 ~~~~~Ar~~feral~~~g~d~~s~-~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~ 239 (1167)
++.+++.++|.++++..+.|.++. -|-..|.. .++.+-|.+.|+|+|+.-..+.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY----~~~PE~AlryYRRiLqmG~~sp 358 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFY----DNNPEMALRYYRRILQMGAQSP 358 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeecccc----CCChHHHHHHHHHHHHhcCCCh
Confidence 899999999999999888776641 22333333 4678999999999998755433
No 110
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.23 E-value=4.2e-11 Score=126.46 Aligned_cols=77 Identities=25% Similarity=0.287 Sum_probs=69.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEeccC
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r~ 1110 (1167)
.++|||+|||+.+|+++|+++|+.||.|.+|.| ++++. .+|||||+|++.++++.||..+|..|+|+.|+|..++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I-~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEM-QSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 589999999999999999999999999999876 44442 56899999999999999998899999999999998875
Q ss_pred C
Q 001064 1111 N 1111 (1167)
Q Consensus 1111 ~ 1111 (1167)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 111
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.21 E-value=3.4e-11 Score=140.34 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=75.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
..+|||+|||.++++++|+++|++||+|.+|+| ++++.+|+++|||||+|.+.++|.+||+. +|..|.|+.|+|++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i-~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKL-VRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEE-EEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 489999999999999999999999999999986 67888899999999999999999999976 8999999999999887
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 654
No 112
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2.9e-07 Score=105.60 Aligned_cols=445 Identities=13% Similarity=0.073 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH-HHHHHHHH
Q 001064 98 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD-IWLHYCIF 176 (1167)
Q Consensus 98 ~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~-lw~~ya~~ 176 (1167)
+.|+.|-+... ++++++|.+...++|...|++..+..--.-..++.+.|++|.++.+.-....-.++- +=..||.|
T Consensus 14 ~l~t~ln~~~~---~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGK---NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhcc---chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence 55666666544 489999999999999999999988888888888999999998777665442222222 34455555
Q ss_pred HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCc
Q 001064 177 AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLS 256 (1167)
Q Consensus 177 ~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~ 256 (1167)
..+..|+|...++ |.+.....+-..++.+..+++++++|.+||+.+++....+++.-...-..-....
T Consensus 91 ---rlnk~Dealk~~~------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--- 158 (652)
T KOG2376|consen 91 ---RLNKLDEALKTLK------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--- 158 (652)
T ss_pred ---HcccHHHHHHHHh------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh---
Confidence 5688999999888 3444456688888999999999999999999998875554433321100000000
Q ss_pred ccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 257 ELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFE 336 (1167)
Q Consensus 257 ~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e 336 (1167)
-... +... .| ..+.++ .. .+--...++...++|.+|++.++
T Consensus 159 -----l~~~-----~~q~---------------v~-----------~v~e~s--ye-l~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 159 -----LQVQ-----LLQS---------------VP-----------EVPEDS--YE-LLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred -----hhHH-----HHHh---------------cc-----------CCCcch--HH-HHHHHHHHHHhcccHHHHHHHHH
Confidence 0000 0000 00 000000 00 11111234555667777777777
Q ss_pred hhhcCCCcccCCCChh---------hHHHHH-HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCC--
Q 001064 337 TAIRRPYFHVKPLSVT---------ELENWH-NYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGS-- 403 (1167)
Q Consensus 337 ~al~r~~~~v~pld~~---------~~~~W~-~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~-~g~-- 403 (1167)
.+++- --..+... ++..-+ .+.-.+...|+.+++..+|..++..++.+..+-.-...-+.. .++
T Consensus 200 kA~~~---~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 200 KALRI---CREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQN 276 (652)
T ss_pred HHHHH---HHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccc
Confidence 66430 00001100 111111 111112344666666666666666655444322111111111 010
Q ss_pred -HH-HHHHHHHHHHHhh--------h-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH-HHHHHHHHHHHHc
Q 001064 404 -MD-LAHNALARATHVF--------V-KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL-EAIIKHANMERRL 471 (1167)
Q Consensus 404 -~e-~A~~vl~rA~~~~--------~-p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~-~~~~~~a~~e~r~ 471 (1167)
++ .++..++..+..+ . .....++...+.+..-.+..+.++++..+. -...|... .+.+.-+... +.
T Consensus 277 ~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l-p~~~p~~~~~~ll~~~t~~-~~ 354 (652)
T KOG2376|consen 277 YFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL-PGMSPESLFPILLQEATKV-RE 354 (652)
T ss_pred cCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC-CccCchHHHHHHHHHHHHH-HH
Confidence 00 0111111111100 0 011222333333333334444444443332 12223222 2233333222 22
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------cCCCHHHHHHHHHhHh
Q 001064 472 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH-------VQLSKPLLEALIHFES 544 (1167)
Q Consensus 472 g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~-------~p~~~~l~~~~~~~e~ 544 (1167)
..+.++..++....+.+|.+. ..+.+..+.+... .|+.+.|.+++...++. ..+.+.+.-....+.+
T Consensus 355 ~~~~ka~e~L~~~~~~~p~~s-----~~v~L~~aQl~is-~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~ 428 (652)
T KOG2376|consen 355 KKHKKAIELLLQFADGHPEKS-----KVVLLLRAQLKIS-QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYY 428 (652)
T ss_pred HHHhhhHHHHHHHhccCCchh-----HHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHH
Confidence 356777788777777665321 2233444555444 99999999999954421 1222333322222333
Q ss_pred hCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 545 IQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 545 ~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
..++ .+.+..++..++..-.... . ....-..+|.....|+..+|+.+...++++.+.+.+++.
T Consensus 429 ~~~~---~~~a~~vl~~Ai~~~~~~~-t-~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 429 KIKD---NDSASAVLDSAIKWWRKQQ-T-GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred hccC---CccHHHHHHHHHHHHHHhc-c-cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 3322 2234555555544321111 0 113445688888999999999999999999999977653
No 113
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.21 E-value=1.4e-08 Score=118.47 Aligned_cols=198 Identities=14% Similarity=0.069 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH----HHHHHHHH
Q 001064 321 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP----EYWIRYVL 396 (1167)
Q Consensus 321 ~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~----~~w~~ya~ 396 (1167)
++...+++++++..|+++++ ++|.+...+..++..+...|++++++.+|++++...+..+ ..|..++.
T Consensus 123 ~~~~~G~~~~A~~~~~~al~--------~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALE--------LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHh--------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 44555666666666777766 5555566677777777778888888888888887765333 35667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhccChHHHH----HHHHHHHHcCCHHHHHHH---HHHHhhhcCCC--hHHHHHHHHHH
Q 001064 397 CMEASGSMDLAHNALARATHVFVKRLPEIHL----FAARFKEQNGDIDGARAA---YQLVHTETSPG--LLEAIIKHANM 467 (1167)
Q Consensus 397 ~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~----~~a~~~e~~g~~~~A~~~---~~~a~~~~~P~--~~~~~~~~a~~ 467 (1167)
++...|++++|+.+|++++...+........ .........|....+... .... ....+. .......++..
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYA-AWHFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHH-HhhcCcccchHHHHHHHHH
Confidence 8888888888888888886543211111111 111112223322222221 1111 111121 12223456666
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhC---CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 468 ERRLGNLEDAFSLYEQAIAIEKG---KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 468 e~r~g~~e~A~~~~~kAl~~~~~---~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
....|+.++|..+++........ .........+.+-.+..++. .|+.++|+..+..++..
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~-~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA-EGNYATALELLGPVRDD 336 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 67889999999999888775532 11001112233444555555 99999999999999854
No 114
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=3.7e-11 Score=131.89 Aligned_cols=77 Identities=14% Similarity=0.261 Sum_probs=69.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCH--HHHHHHHHh-CCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI--SGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~--~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
..+.+||||||++.+++++|+.+|+.||.|++|.|. +.+| ||||||+|.+. .++.+||.. ||..+.||.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp---RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV---RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe---cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 356899999999999999999999999999998863 5566 89999999987 689999987 899999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
+.+++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 98874
No 115
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=3.9e-08 Score=105.00 Aligned_cols=250 Identities=11% Similarity=0.053 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
+.+|+..++.+.||++-...+++|-+ ......-+...++.=+...|-++||..+|.......-.-+.+...+..++
T Consensus 76 GnLfRsRGEvDRAIRiHQ~L~~spdl----T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IY 151 (389)
T COG2956 76 GNLFRSRGEVDRAIRIHQTLLESPDL----TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIY 151 (389)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 34567777888888888888876532 22333445666676667889999999999998876445566888889999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhcc-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001064 399 EASGSMDLAHNALARATHVFVKR-L---PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~-~---~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
....++++|+++-++..++-... . ...+..+|.-+....+.+.|+.++.++ ++.+|++..+=+..++++...|++
T Consensus 152 Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA-lqa~~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 152 QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA-LQADKKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HhhCccceehhhhhhHHHHhccch
Confidence 99999999999999888765321 1 233444566666678999999999999 678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001064 475 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 554 (1167)
Q Consensus 475 e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ 554 (1167)
..|.+.++++++.++. ..+++...+...+. ..|+.++.+..+.++.+.++.......-+-..|...| ++.
T Consensus 231 ~~AV~~~e~v~eQn~~-----yl~evl~~L~~~Y~-~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G----~~~ 300 (389)
T COG2956 231 QKAVEALERVLEQNPE-----YLSEVLEMLYECYA-QLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEG----IDA 300 (389)
T ss_pred HHHHHHHHHHHHhChH-----HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhC----hHH
Confidence 9999999999999863 34666666666644 5999999999999999999877655544444444333 455
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC
Q 001064 555 LEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG 593 (1167)
Q Consensus 555 ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G 593 (1167)
++...-+-|...|.. ..+-+++++...-+
T Consensus 301 Aq~~l~~Ql~r~Pt~----------~gf~rl~~~~l~da 329 (389)
T COG2956 301 AQAYLTRQLRRKPTM----------RGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHhhCCcH----------HHHHHHHHhhhccc
Confidence 676666666665532 36777777765544
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=9.3e-10 Score=125.81 Aligned_cols=258 Identities=13% Similarity=0.096 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001064 321 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 400 (1167)
Q Consensus 321 ~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~ 400 (1167)
.+.+.+.+.+|...||.+|+ .||...+.|..++...-.+++-..++..++||+..+|.+-++.+.+|..+..
T Consensus 294 ~lm~nG~L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHhcCCchHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 45677789999999999999 8999999999999887777777889999999999999999999999999988
Q ss_pred cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC---------CHHHHHHHHHHHhhhcCC--ChHHHHHHHHHHHH
Q 001064 401 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG---------DIDGARAAYQLVHTETSP--GLLEAIIKHANMER 469 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g---------~~~~A~~~~~~a~~~~~P--~~~~~~~~~a~~e~ 469 (1167)
.|.-..|..+|.+=|...+ +..|+..+.-....+ .+....++|-.+ ....| .++++...++.++.
T Consensus 366 eg~q~~Al~~L~~Wi~~~p---~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLea-a~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKP---KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEA-ARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhhHHHHHHHHHHHHHhCc---cchhccccCccccccCCcCCCCHHHHHHHHHHHHHH-HHhCCCCCChhHHhhhHHHHh
Confidence 8888889999988877653 233433322111111 123334455554 34466 68889999999998
Q ss_pred HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh
Q 001064 470 RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 470 r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~ 549 (1167)
-.|+|++|+.+|+.||...|++ ..+|..||-.+.- ..+..+|...|.+||++.|.-...+.+++.=-+.+|.
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~- 513 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA- 513 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-
Confidence 8999999999999999998754 5699999999765 6789999999999999999876666544433333332
Q ss_pred hHHHHHHHHHHHHhhc--CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001064 550 KQIDFLEQLVDKFLMS--NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 601 (1167)
Q Consensus 550 ~~~~~ar~l~eral~~--~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v 601 (1167)
++.+-..|-.||.. .+.++-. .+.....||....-++...+..+.+..+
T Consensus 514 --ykEA~~hlL~AL~mq~ks~~~~~-~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 514 --YKEAVKHLLEALSMQRKSRNHNK-APMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred --HHHHHHHHHHHHHhhhccccccc-CCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 44444444444432 2222210 0111467999999999888877754443
No 117
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.16 E-value=1.4e-10 Score=138.46 Aligned_cols=82 Identities=18% Similarity=0.369 Sum_probs=75.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+||+.++++++|+++|+.||.|++|+| ++++.+|++||||||+|++.+++.+||+. |++.|+|+.|+|.++
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl-~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEE-EecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 3479999999999999999999999999999986 67778899999999999999999999987 899999999999988
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
.+.+
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 7644
No 118
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.9e-10 Score=116.87 Aligned_cols=78 Identities=29% Similarity=0.414 Sum_probs=70.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++||||||+..+|+++|++.|++||.|.+|+|+- .+||+||.|++.|+|..||.. |+.+|+|+.+++.+.
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-------~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-------DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-------ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 679999999999999999999999999999988632 468999999999999999976 999999999999998
Q ss_pred cCCCCC
Q 001064 1109 RPNTGS 1114 (1167)
Q Consensus 1109 r~~~~~ 1114 (1167)
+.....
T Consensus 236 Ke~~~~ 241 (321)
T KOG0148|consen 236 KEGDDG 241 (321)
T ss_pred ccCCCC
Confidence 875543
No 119
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=5.1e-12 Score=122.09 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=73.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
-.++.-|||||||++.|+.||-.+|++||+|.+|. ++||+.||+++||||+.|+|..+.--|+.. ||+.|.||.|+|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdin-LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDIN-LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEE-EEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 44678999999999999999999999999999986 589999999999999999999998888876 8999999999997
Q ss_pred ec
Q 001064 1107 ER 1108 (1167)
Q Consensus 1107 ~~ 1108 (1167)
-.
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 43
No 120
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.15 E-value=1.4e-10 Score=120.22 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=68.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
.+++|||+||++.+|+++|+++|+.||.|.+|+| +++. ..+|||||+|++.++++.||.++|..|.|+.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I-~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEI-IRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEE-ecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4799999999999999999999999999999885 4443 45689999999999999999999999999999998654
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.14 E-value=3.8e-09 Score=115.61 Aligned_cols=177 Identities=14% Similarity=0.049 Sum_probs=139.7
Q ss_pred CCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChH
Q 001064 348 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE 424 (1167)
Q Consensus 348 pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~---~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~ 424 (1167)
|.+....+.+...+..+...|+++.|+..|++++...|.++ ++|+..+.++...|++++|+..|+++++.+ |+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~ 105 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPD 105 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCc
Confidence 35566678899999888899999999999999999988775 688999999999999999999999999988 66555
Q ss_pred ---HHHHHHHHHHHc--------CCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcCCHHH
Q 001064 425 ---IHLFAARFKEQN--------GDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLGNLED 476 (1167)
Q Consensus 425 ---l~~~~a~~~e~~--------g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g~~e~ 476 (1167)
.++..+.++... |++++|+..|+++ ++.+|++...+ +..+.++.+.|++++
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQEL-IRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH-HHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 577777777654 7899999999998 67799886553 234556667788888
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 477 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
|+..|++++...|+. +..+.++..++..+.. .|++++|..+++.....+|
T Consensus 185 A~~~~~~al~~~p~~---~~~~~a~~~l~~~~~~-lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 185 AINRFETVVENYPDT---PATEEALARLVEAYLK-LGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHCCCC---cchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 888888888776542 3345667777777665 7888888887777766655
No 122
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.14 E-value=1.6e-10 Score=100.33 Aligned_cols=69 Identities=26% Similarity=0.521 Sum_probs=60.4
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1034 VYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1034 l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
|||+|||+++++++|+++|+.||.|..+.+ ..++. |.++|+|||+|.+.++|.+|+.. ++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~-~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRL-IKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEE-EESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEE-Eeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999765 44555 88999999999999999999998 67999999875
No 123
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=6.2e-08 Score=113.12 Aligned_cols=314 Identities=14% Similarity=0.047 Sum_probs=205.4
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD 168 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~ 168 (1167)
.||+..-+|..++.++... ++...+.+.|.+++...|.+ .+.+...+..+...|++++|.++++++|..+|.+..
T Consensus 1 ~dp~~~~a~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~ 78 (355)
T cd05804 1 ADPDFALGHAAAALLLLLG--GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL 78 (355)
T ss_pred CCCccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence 3799999999999888764 56777788899988888755 456777777888999999999999999999999988
Q ss_pred HHHH-HHHHHHh-hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHH
Q 001064 169 IWLH-YCIFAIN-TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSF 246 (1167)
Q Consensus 169 lw~~-ya~~~~~-~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~ 246 (1167)
.|.. +..+... ..+..+.+.+.++. ..+.++.....+..++..+..+|++++|...|+++++..+.+...+.
T Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~--- 152 (355)
T cd05804 79 ALKLHLGAFGLGDFSGMRDHVARVLPL---WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVH--- 152 (355)
T ss_pred HHHHhHHHHHhcccccCchhHHHHHhc---cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHH---
Confidence 8773 1122110 12444455555544 23455555555556667778899999999999999998666432222
Q ss_pred HHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH
Q 001064 247 KEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK 326 (1167)
Q Consensus 247 ~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~ 326 (1167)
....+|...+
T Consensus 153 ----------------------------------------------------------------------~la~i~~~~g 162 (355)
T cd05804 153 ----------------------------------------------------------------------AVAHVLEMQG 162 (355)
T ss_pred ----------------------------------------------------------------------HHHHHHHHcC
Confidence 1123456677
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-CHHHHH-HH---HHHHHH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-YPEYWI-RY---VLCMEA 400 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~-~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~-~~~~w~-~y---a~~l~~ 400 (1167)
++++++..|++++.. .|.++. ....|..++.++...|++++|+.+|++++...+. ..-.+. .. ...+..
T Consensus 163 ~~~eA~~~l~~~l~~-----~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 163 RFKEGIAFMESWRDT-----WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred CHHHHHHHHHhhhhc-----cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 888888888888861 111111 2346778888999999999999999999765442 111222 21 111222
Q ss_pred cCCHHHHHHH---HHHHHHhhh-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC---C-----hHHHHHHHHHHH
Q 001064 401 SGSMDLAHNA---LARATHVFV-KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP---G-----LLEAIIKHANME 468 (1167)
Q Consensus 401 ~g~~e~A~~v---l~rA~~~~~-p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P---~-----~~~~~~~~a~~e 468 (1167)
.|....+... ........+ +-........+..+...|+.+.|..+++.+...... . ...+.+..+..+
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 3433222222 111111110 011222234667777889999999999876221111 1 234556777778
Q ss_pred HHcCCHHHHHHHHHHHHHhh
Q 001064 469 RRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~ 488 (1167)
.+.|++++|+.++..++...
T Consensus 318 ~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 318 FAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 89999999999999998765
No 124
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.4e-10 Score=106.45 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=77.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..|..|||.++...+++++|.+.|..||+|+.+++.+ ++.||-.|||+.|+|++...|++||.. ||..|.|..|.|++
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNL-DRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNL-DRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeecc-ccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3689999999999999999999999999999988765 677999999999999999999999988 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
+-.+.+
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 876544
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=1e-08 Score=106.10 Aligned_cols=191 Identities=16% Similarity=0.155 Sum_probs=164.2
Q ss_pred CChHHHHHHHHHHHHhcCC---CHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH
Q 001064 368 GDFNKVVKLYERCLIACAN---YPEYWIRYVL---CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 368 g~~~~a~~~yeral~~~p~---~~~~w~~ya~---~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~ 441 (1167)
.+.++++.++...+...+. -.+.|.-|=+ .....|+.+.|..++++....+ |++..+-.+.|.+++..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3566677777766655432 2456655543 3345789999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH
Q 001064 442 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 521 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i 521 (1167)
|.++|+++ ++-+|.+..++.+..-+...+|+--+|++.+...++.++++ +++|..+++++.. .|++++|.=+
T Consensus 105 A~e~y~~l-L~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D------~EAW~eLaeiY~~-~~~f~kA~fC 176 (289)
T KOG3060|consen 105 AIEYYESL-LEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND------QEAWHELAEIYLS-EGDFEKAAFC 176 (289)
T ss_pred HHHHHHHH-hccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHh-HhHHHHHHHH
Confidence 99999998 67799999999999999999999999999999999999643 7899999999665 9999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 522 LVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 522 ~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
|+..+=+.|.++.++..|+.+.+.++...++..+|+.|++++...+
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999998887888999999999999765
No 126
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.13 E-value=1.4e-10 Score=138.39 Aligned_cols=79 Identities=24% Similarity=0.312 Sum_probs=72.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||||||+++++++|+++|++||.|++|+| +.++.+|+++|||||+|.+.+++.+||+. ||..|+||.|+|...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I-~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINM-SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEE-eecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4589999999999999999999999999999886 56888999999999999999999999976 899999999999854
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.11 E-value=2.1e-09 Score=113.59 Aligned_cols=122 Identities=14% Similarity=0.070 Sum_probs=113.2
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhCC--HHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHE-ARVGS--MDKVV 153 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e-~~~~~--~e~A~ 153 (1167)
++.++.+..|+++++.+|+|.++|..|++.+..+ +++++|..+|+++++..|++..+|..++.+. ...|+ .++|+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~--g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR--NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5678889999999999999999999999999874 8999999999999999999999999999964 67777 59999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
++|+++|+.+|.+++.|..++..+. ..|++++|+..|+++++..+.+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~-~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAF-MQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999999998 6899999999999999988776
No 128
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=7.2e-11 Score=120.39 Aligned_cols=85 Identities=28% Similarity=0.509 Sum_probs=79.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+|++|||-.||.+..+.+|-++|-.||.|.+.+|++ |+.|+.+||||||.|++..+++.||.+ ||+.|+-++|+|.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv-DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV-DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee-hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 34789999999999999999999999999999999866 888999999999999999999999988 8999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
.+|++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 9998754
No 129
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=7.6e-07 Score=102.30 Aligned_cols=446 Identities=12% Similarity=0.064 Sum_probs=248.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
+++++++....+++...|+|.++..--.-.+-+ .+.+++|.++.+.-....-.+ .+.+.-+.++.+.+..++|...+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq--~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ--LDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh--hhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHH
Confidence 789999999999999999999998743333333 257777764444333222222 22266777888999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 236 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~ 236 (1167)
+ .+ .+.+..+...+++.+. .++++++|..+|+..++..-.+... .+...++. ...-..+. +.+..-+.+.
T Consensus 103 ~-~~--~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~-~~r~nl~a----~~a~l~~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 103 K-GL--DRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDE-ERRANLLA----VAAALQVQ-LLQSVPEVPE 172 (652)
T ss_pred h-cc--cccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHH-HHHHHHHH----HHHhhhHH-HHHhccCCCc
Confidence 8 33 3566778889999998 7899999999999999843222111 11111111 01111111 2333334466
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHH
Q 001064 237 QQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIA 316 (1167)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~ 316 (1167)
..++.+|+..+.++....+.+.+..-+.+ .+-..+.+.+-.. ..++.+ +++.-+..
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA--~~~~~e~l~~~d~---------~eEeie-------------~el~~Irv 228 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKA--LRICREKLEDEDT---------NEEEIE-------------EELNPIRV 228 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHH--HHHHHHhhccccc---------chhhHH-------------HHHHHHHH
Confidence 68899999988887655443321110000 0000011110000 000000 11111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHH-HHHHHHHHHcCChH-HHHHHHH--------HHHHhc--
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENW-HNYLDFIERDGDFN-KVVKLYE--------RCLIAC-- 384 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W-~~y~~~~e~~g~~~-~a~~~ye--------ral~~~-- 384 (1167)
.+..++...++-.++...|...|++ .|.|.....+- .+++.+-....=++ .++..++ .++...
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~-----~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~ 303 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKR-----NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK 303 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHh-----cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344677888999999999999985 33443222222 22222211111111 1111221 111111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-HHHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-LEAIIK 463 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-~~~~~~ 463 (1167)
.+-..|..+.+.+....+..+.+++...+.-...|.....+.+..+....+. ...+|..++... .+-.|.+ ..+.+.
T Consensus 304 ~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~-~~~ka~e~L~~~-~~~~p~~s~~v~L~ 381 (652)
T KOG2376|consen 304 KQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREK-KHKKAIELLLQF-ADGHPEKSKVVLLL 381 (652)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHH-HHhhhHHHHHHH-hccCCchhHHHHHH
Confidence 1112244455554445566666665544333222111122333333322222 677788888876 5667776 567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCC-ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc----CCC---HHH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKE-HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV----QLS---KPL 535 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~-~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~----p~~---~~l 535 (1167)
.+.+...+|+++.|+.++...+..-...- .....|. .+.++.+++...++.+.|-.++..|+... +.+ ..+
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~-~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG-TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh-HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 88999999999999999995442211000 0112233 34555555555777888888888888743 222 366
Q ss_pred HHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 536 LEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 536 ~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
|...+.|++..|+ .+.+.++++..+..++...
T Consensus 461 ~~~aa~f~lr~G~---~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 461 MREAAEFKLRHGN---EEEASSLLEELVKFNPNDT 492 (652)
T ss_pred HHHHhHHHHhcCc---hHHHHHHHHHHHHhCCchH
Confidence 7788999999876 5557788888888766544
No 130
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.07 E-value=9.2e-08 Score=114.22 Aligned_cols=99 Identities=9% Similarity=-0.020 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001064 98 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFA 177 (1167)
Q Consensus 98 ~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~ 177 (1167)
+.....+.++.. .|++++|.+.++..-..-.+...+.-..|+++++.|++++|..+|...|..+|++.+....|....
T Consensus 5 E~lLY~~~il~e--~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 5 ELLLYKNSILEE--AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 334445555554 378888888888888888888888888888888888888888888888888888877777776665
Q ss_pred Hhh----cCCHHHHHHHHHHHHHhc
Q 001064 178 INT----YGDPETIRRLFERGLAYV 198 (1167)
Q Consensus 178 ~~~----~~~~~~Ar~~feral~~~ 198 (1167)
.-. ..+.+....+|+......
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~y 107 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKY 107 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhC
Confidence 211 123455666666655544
No 131
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=7.8e-10 Score=112.57 Aligned_cols=85 Identities=21% Similarity=0.400 Sum_probs=79.3
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
.+...+.|.|..||.++|+++||.+|+..|+|++|++ +||+-+|++-|||||.|-++.+|++||.. ||..+..+.|+|
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKL-vRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKL-VRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeee-eeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 3445688999999999999999999999999999984 99999999999999999999999999987 899999999999
Q ss_pred EeccCCC
Q 001064 1106 EERRPNT 1112 (1167)
Q Consensus 1106 ~~~r~~~ 1112 (1167)
.++||..
T Consensus 116 SyARPSs 122 (360)
T KOG0145|consen 116 SYARPSS 122 (360)
T ss_pred EeccCCh
Confidence 9999865
No 132
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.05 E-value=3.9e-08 Score=115.95 Aligned_cols=249 Identities=16% Similarity=0.157 Sum_probs=180.8
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA--------CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV- 419 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~--------~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~- 419 (1167)
.+|.....-+.++..+...|+++.|..++++|+.. ++........+|.++...+++++|..+|++|+.+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666677777888889999999999999999998 555566777799999999999999999999999874
Q ss_pred ---cc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-------hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 420 ---KR---LPEIHLFAARFKEQNGDIDGARAAYQLVH-------TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 486 (1167)
Q Consensus 420 ---p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~-------~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~ 486 (1167)
++ ...++..++.++...|++++|...+++++ ....|.....+...+.++..++++++|..+|.++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 23 34567778888999999999998888762 122344445577777888889999999999999999
Q ss_pred hhhC--CCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc----C-----CCHHHHHHHHHhHhhCCChhHHHHH
Q 001064 487 IEKG--KEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV----Q-----LSKPLLEALIHFESIQSSPKQIDFL 555 (1167)
Q Consensus 487 ~~~~--~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~----p-----~~~~l~~~~~~~e~~~~~~~~~~~a 555 (1167)
+... .++....+.++.+++.+++. .|++++|+++|++|++.. . ....+|.--...+ .. +.+..+
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~-~~---k~~~~a 428 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE-EL---KKYEEA 428 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH-Hh---cccchH
Confidence 7652 11223456788999999887 999999999999999954 1 1234453222221 11 123445
Q ss_pred HHHHHHHhhc----CCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 556 EQLVDKFLMS----NSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 556 r~l~eral~~----~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
-.+|++++.. .++.+. -...........+..|+.+.+.++..+....
T Consensus 429 ~~l~~~~~~i~~~~g~~~~~------~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 429 EQLFEEAKDIMKLCGPDHPD------VTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 6666666432 233332 2345666666777889888888888777644
No 133
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.05 E-value=3e-08 Score=116.91 Aligned_cols=258 Identities=14% Similarity=0.154 Sum_probs=163.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHh---
Q 001064 129 FPLCYGYWKKYADHEARVGSMDKVVEVYERAVQG--------VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAY--- 197 (1167)
Q Consensus 129 ~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~--------~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~--- 197 (1167)
+|.-...-..++..+..+|++++|+.+|++||.. +|.=......++.++. ..+++++|..+|++||..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHH
Confidence 4666677778999999999999999999999998 4443444445777777 789999999999999975
Q ss_pred -cC-CCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCC
Q 001064 198 -VG-TDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 275 (1167)
Q Consensus 198 -~g-~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~ 275 (1167)
.| +|+....+...++..+...|++++|...+++++++-...+.
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~----------------------------------- 318 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG----------------------------------- 318 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc-----------------------------------
Confidence 23 45445566666666777889999999999999866332000
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHH
Q 001064 276 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELE 355 (1167)
Q Consensus 276 ~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~ 355 (1167)
....++...+.-...++...++++++...|.++++
T Consensus 319 ------------------------------~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~--------------- 353 (508)
T KOG1840|consen 319 ------------------------------ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK--------------- 353 (508)
T ss_pred ------------------------------cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH---------------
Confidence 00111122333334456666676666666655544
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----c----ChHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK----R----LPEIH 426 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~-~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p----~----~~~l~ 426 (1167)
.|.+++.. ++.-..+..+++..+...|++++|.++|++|+.+... . ..-+|
T Consensus 354 --------------------i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 354 --------------------IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred --------------------HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 22222222 1123345555555555555566665555555554410 0 11122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH------hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 427 LFAARFKEQNGDIDGARAAYQLV------HTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a------~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
.+ |....+.+++.+|..+|.++ +..-.|+....+..++-++.++|++++|+++.++++...
T Consensus 414 ~l-a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 414 QL-AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HH-HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 22 23335556666555555543 122245666778999999999999999999999888644
No 134
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.03 E-value=5.5e-09 Score=110.35 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=114.6
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH-HHcCC--HHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK-EQNGD--IDGAR 443 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~-e~~g~--~~~A~ 443 (1167)
.++.++++..+++++..+|.+.+.|+.++.++...|++++|...|++++.+. |+++.++..+|.++ ...|+ .++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4567889999999999999999999999999999999999999999999988 89999999999965 67777 59999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 444 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 444 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
.+|+++ ++++|++..+++.++..+.++|++++|+.+|+++++..+.+
T Consensus 131 ~~l~~a-l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 131 EMIDKA-LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHH-HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999998 88999999999999999999999999999999999999754
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.02 E-value=6.6e-09 Score=104.00 Aligned_cols=115 Identities=11% Similarity=0.073 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 001064 81 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAV 160 (1167)
Q Consensus 81 ~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL 160 (1167)
--+..|+++++.+|.+ |+.++..+.. .|++++|...|++++...|.+..+|..++.++.+.|++++|+..|++++
T Consensus 11 ~~~~~~~~al~~~p~~---~~~~g~~~~~--~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 11 IPEDILKQLLSVDPET---VYASGYASWQ--EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred CHHHHHHHHHHcCHHH---HHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3467889999999996 6667777776 4899999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 161 QGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 161 ~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
...|.+.+.|+..+..+. ..|++++|+..|++++...|.+
T Consensus 86 ~l~p~~~~a~~~lg~~l~-~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLK-MMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred hcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999888 7899999999999999977765
No 136
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.01 E-value=6.4e-09 Score=104.13 Aligned_cols=121 Identities=14% Similarity=-0.020 Sum_probs=97.5
Q ss_pred HHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 335 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 335 ~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
|+++|. ++|.. |..++..+...|++++|+..|++++...|.+.++|+.++.++...|++++|...|+++
T Consensus 16 ~~~al~--------~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 16 LKQLLS--------VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHH--------cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 667776 66653 5556666677888888888888888888888888888888888888888888888888
Q ss_pred HHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 415 ~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
+.+. |+++..|+.++..+...|++++|+..|+++ +++.|++...|...+...
T Consensus 85 l~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A-l~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 85 LMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTA-IKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHH
Confidence 8876 788888888888888888888888888887 678888888876666553
No 137
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=2.5e-07 Score=110.56 Aligned_cols=304 Identities=15% Similarity=0.165 Sum_probs=202.3
Q ss_pred ccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---
Q 001064 70 GQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV--- 146 (1167)
Q Consensus 70 ~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~--- 146 (1167)
-+++.+.|++++|++.|.+.-+.-.+........++++.++ |+.++|..+|..+|.++|+|..|+..|.....-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kL--g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKL--GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 35677789999999999998887787777777899999987 7999999999999999999999999998887322
Q ss_pred --CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC-CHH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHH
Q 001064 147 --GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG-DPE-TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWS 222 (1167)
Q Consensus 147 --~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~-~~~-~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~ 222 (1167)
.+.+....+|+..-..+|.+.-.-..-+.|.. | .+. .+...+...|.. |. +.++...
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~---g~~F~~~~~~yl~~~l~K-gv----PslF~~l----------- 149 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE---GDEFKERLDEYLRPQLRK-GV----PSLFSNL----------- 149 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCC---HHHHHHHHHHHHHHHHhc-CC----chHHHHH-----------
Confidence 35777888888888888776433222222211 1 111 111122222211 11 0111111
Q ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccc
Q 001064 223 RVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVS 302 (1167)
Q Consensus 223 ~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~ 302 (1167)
+.+|. .+.....+-..+..
T Consensus 150 --k~Ly~-----d~~K~~~i~~l~~~------------------------------------------------------ 168 (517)
T PF12569_consen 150 --KPLYK-----DPEKAAIIESLVEE------------------------------------------------------ 168 (517)
T ss_pred --HHHHc-----ChhHHHHHHHHHHH------------------------------------------------------
Confidence 11110 00000000000000
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcccC---CCChhhHHHHHHH--HHHHHHcCChHHHHHH
Q 001064 303 AGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIR-RPYFHVK---PLSVTELENWHNY--LDFIERDGDFNKVVKL 376 (1167)
Q Consensus 303 ~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~-r~~~~v~---pld~~~~~~W~~y--~~~~e~~g~~~~a~~~ 376 (1167)
|...+. ...|... ..+++..-+|..| +.++...|++++|+..
T Consensus 169 --------------------------------~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~ 216 (517)
T PF12569_consen 169 --------------------------------YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEY 216 (517)
T ss_pred --------------------------------HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 000000 0001000 1233444567665 6788899999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC--
Q 001064 377 YERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS-- 454 (1167)
Q Consensus 377 yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~-- 454 (1167)
.++||...|..+++++..|.++...|++.+|...++.|..+. ..+--|....+.++.+.|++++|.+++..- .+-+
T Consensus 217 Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F-tr~~~~ 294 (517)
T PF12569_consen 217 IDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLF-TREDVD 294 (517)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCCC
Confidence 999999999999999999999999999999999999999876 566667778899999999999999988864 3322
Q ss_pred CC-h-H---HHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 455 PG-L-L---EAI--IKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 455 P~-~-~---~~~--~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
|. + . .+| ...+..+.|.|++..|..-|...++++.
T Consensus 295 ~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 295 PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 11 1 1 145 3445667889999999999998888774
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.01 E-value=1.1e-07 Score=118.29 Aligned_cols=185 Identities=12% Similarity=0.103 Sum_probs=124.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCH
Q 001064 126 LAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSF 205 (1167)
Q Consensus 126 l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~ 205 (1167)
....|.+..+|..++..+...+++++|..+++.++..+|.+..+|+..+-++. ..++.+++-.+ +++...+.+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~---- 96 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQN---- 96 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccc----
Confidence 45568999999999999999999999999999999999999999999888666 55665555444 444433322
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhcc
Q 001064 206 PLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKAN 285 (1167)
Q Consensus 206 ~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~ 285 (1167)
.++..+.-+|.+++..
T Consensus 97 -------------~~~~~ve~~~~~i~~~--------------------------------------------------- 112 (906)
T PRK14720 97 -------------LKWAIVEHICDKILLY--------------------------------------------------- 112 (906)
T ss_pred -------------cchhHHHHHHHHHHhh---------------------------------------------------
Confidence 1222121111111111
Q ss_pred ccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHH
Q 001064 286 EEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIE 365 (1167)
Q Consensus 286 e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e 365 (1167)
+.+-.+.+.++.+|.
T Consensus 113 -----------------------------------------------------------------~~~k~Al~~LA~~Yd 127 (906)
T PRK14720 113 -----------------------------------------------------------------GENKLALRTLAEAYA 127 (906)
T ss_pred -----------------------------------------------------------------hhhhHHHHHHHHHHH
Confidence 111224556667777
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~ 445 (1167)
+.|+.+++..+|+++|..+|+++.+..+||.++... ++++|+..+.+|+..+ ...+++.+++.+
T Consensus 128 k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~---------------i~~kq~~~~~e~ 191 (906)
T PRK14720 128 KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF---------------IKKKQYVGIEEI 191 (906)
T ss_pred HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH---------------HhhhcchHHHHH
Confidence 888888888888888888888888888888877777 8888888888887753 123355556666
Q ss_pred HHHHhhhcCCChHHHHHH
Q 001064 446 YQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 446 ~~~a~~~~~P~~~~~~~~ 463 (1167)
.++. .+.+|++.+.++.
T Consensus 192 W~k~-~~~~~~d~d~f~~ 208 (906)
T PRK14720 192 WSKL-VHYNSDDFDFFLR 208 (906)
T ss_pred HHHH-HhcCcccchHHHH
Confidence 6665 4556655554433
No 139
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.00 E-value=2.5e-09 Score=116.38 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=70.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHh-cCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..+++||.|||+++.+.+|+++|. +.|+|..|.++. ..+|++||||.|||++++.+++|++. |.+.++||.|+|.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~--D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLF--DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeec--ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 347799999999999999999996 789999987543 44699999999999999999999988 89999999999988
Q ss_pred ccC
Q 001064 1108 RRP 1110 (1167)
Q Consensus 1108 ~r~ 1110 (1167)
.+.
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 764
No 140
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.8e-10 Score=113.03 Aligned_cols=82 Identities=26% Similarity=0.426 Sum_probs=75.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++||||+|..++++.-|...|-+||.|++|.+.+ |-.++++||||||+|+..++|.+||.. |+.++.||.|+|.++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPl-DyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPL-DYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhccccc-chhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 459999999999999999999999999999988755 677899999999999999999999987 899999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8654
No 141
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=1.7e-09 Score=110.07 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=76.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+..|||-||.+++++.-|.++|++||.|..|+| +||-.|.++||||||++.+.++|..||.. ||..+++|.|.|.++
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKv-irD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKV-IRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEE-EecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 5799999999999999999999999999999986 78888899999999999999999999977 899999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 764
No 142
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=3.1e-08 Score=122.54 Aligned_cols=137 Identities=10% Similarity=0.037 Sum_probs=130.2
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 430 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a 430 (1167)
+...+..+.++......|.+++|..++++|+..+|++..+++.++..|.+.+++++|+..+++++... |+++..++.+|
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.++.+.|++++|..+|+++ +..+|++..+|+.++..+...|+.++|...|++|++...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~-~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 162 KSWDEIGQSEQADACFERL-SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHhcchHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999998 557999999999999999999999999999999999874
No 143
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=8.2e-10 Score=113.60 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=76.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
-..+||+.|...++-++||+.|.+||+|-+++| |||..|+++||||||.|...++|+.||.. ||.-|++|.|+-.++.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akv-irD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKV-IRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceE-eecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 478999999999999999999999999999997 89999999999999999999999999987 8999999999999987
Q ss_pred CCCC
Q 001064 1110 PNTG 1113 (1167)
Q Consensus 1110 ~~~~ 1113 (1167)
.++.
T Consensus 141 RKp~ 144 (321)
T KOG0148|consen 141 RKPS 144 (321)
T ss_pred cCcc
Confidence 6653
No 144
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.98 E-value=7.2e-09 Score=128.40 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=72.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+.+|||+||+.++|+++|+++|++||.|++|+|.. + .+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~-d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML-D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE-C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 568899999999999999999999999999988643 4 6789999999999999999999976 899999999999987
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 754
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.97 E-value=6.8e-08 Score=120.03 Aligned_cols=207 Identities=10% Similarity=0.019 Sum_probs=160.8
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh-----
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP----- 423 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~----- 423 (1167)
.++.+.+.|..++..+...+++++++.+.+.++..+|....+|+..+.++.+.++.+.+.-+ +++.++ +...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~v 102 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIV 102 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHH
Confidence 57888999999999999999999999999999999999999999999988888888777666 677666 3333
Q ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 424 --------------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 424 --------------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.+++.+|.++.+.|+.++|..+|+++ ++++|+++.+...+|.++... ++++|+.++.+|+...-
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~-L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL-VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 67888899999999999999999998 899999999999999998888 99999999999988642
Q ss_pred CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhC-----------------CChhHH
Q 001064 490 GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ-----------------SSPKQI 552 (1167)
Q Consensus 490 ~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~-----------------~~~~~~ 552 (1167)
. .+.+..++.+|++.++.+|++..++..+...-... ...++.
T Consensus 181 --------------------~-~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 181 --------------------K-KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred --------------------h-hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence 1 34577777777777777777766544332222111 112234
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHH
Q 001064 553 DFLEQLVDKFLMSNSDSPSTANAAEREELSCVFL 586 (1167)
Q Consensus 553 ~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l 586 (1167)
+....++.++|...+.|. .-+.+|..-|.
T Consensus 240 ~~~i~iLK~iL~~~~~n~-----~a~~~l~~~y~ 268 (906)
T PRK14720 240 DEVIYILKKILEHDNKNN-----KAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHhcCCcch-----hhHHHHHHHHH
Confidence 556677788888777665 23455555554
No 146
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.95 E-value=2.1e-09 Score=133.17 Aligned_cols=76 Identities=24% Similarity=0.416 Sum_probs=70.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+|||||||.++|+++|+++|++||.|.+|+| +++..+++++|||||+|.+.++|++||+. ++..|+|+.|+|.+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v-~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRV-CRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 7999999999999999999999999999876 67888899999999999999999999987 7888999999998764
No 147
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.95 E-value=2.1e-09 Score=129.86 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=74.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.++|||+|||..+++++|+++|++||.|..|.+ +.++.+|+++|||||+|.+.++|.+||..+|..|.|+.|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i-~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQC-IKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 446789999999999999999999999999999986 5678889999999999999999999999999999999999976
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
..
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 43
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3e-08 Score=108.97 Aligned_cols=276 Identities=12% Similarity=0.055 Sum_probs=184.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 191 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~f 191 (1167)
+.++..|.+.|..++..+|++..+|..-+..++..++++.+.--.++.+++.|....-...-.+... ..++..+|...|
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~-a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL-ALSDLIEAEEKL 140 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh-hhHHHHHHHHHh
Confidence 3678899999999999999999999999999999999999999999998887654432222222222 122222332222
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHh
Q 001064 192 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAV 271 (1167)
Q Consensus 192 eral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~ 271 (1167)
+ + ... .....+...+++++......
T Consensus 141 ~--------~---~~~-----------~~~anal~~~~~~~~s~s~~--------------------------------- 165 (486)
T KOG0550|consen 141 K--------S---KQA-----------YKAANALPTLEKLAPSHSRE--------------------------------- 165 (486)
T ss_pred h--------h---hhh-----------hHHhhhhhhhhcccccccCC---------------------------------
Confidence 2 0 000 00111111122211110000
Q ss_pred hhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCh
Q 001064 272 AAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV 351 (1167)
Q Consensus 272 ~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~ 351 (1167)
....++..+...++...+++.+++..--..++ +|+
T Consensus 166 -------------------------------------pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk--------ld~ 200 (486)
T KOG0550|consen 166 -------------------------------------PACFKAKLLKAECLAFLGDYDEAQSEAIDILK--------LDA 200 (486)
T ss_pred -------------------------------------chhhHHHHhhhhhhhhcccchhHHHHHHHHHh--------ccc
Confidence 00000111112233344455555444444444 666
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 352 TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------------YWIRYVLCMEASGSMDLAHNALARATHVFV 419 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~------------~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~ 419 (1167)
.+.+...--..++--+.+.+.++..|+++|...|.+.+ .|..-+.-..+.|.+..|.++|..||.+.|
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 65544333333444456777888888888888776653 677777777788999999999999999884
Q ss_pred cc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 420 KR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 420 p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.+ +..+|...+....+.|+..+|+.-.+.+ +.+++..+..++..++...-++++++|...|++|++...
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~A-l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEA-LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 32 4567788889999999999999999998 899999999999999999999999999999999999875
No 149
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.4e-07 Score=97.94 Aligned_cols=174 Identities=16% Similarity=0.040 Sum_probs=148.7
Q ss_pred HHHHHH---HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHH
Q 001064 355 ENWHNY---LDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 431 (1167)
Q Consensus 355 ~~W~~y---~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~ 431 (1167)
+.|.-| .......++.+-|..++.+.....|....+-..+|.+++..|.+++|.++|++.++-. |.+..++-....
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlA 128 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLA 128 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHH
Confidence 345554 3333567888999999999999999999999999999999999999999999999866 777788887777
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
++..+|+--+|++.+..- ++..+++.++|...++++...|++++|.-+|++.+-+.| ..|..+..|++++|..
T Consensus 129 ilka~GK~l~aIk~ln~Y-L~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P------~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEY-LDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP------FNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHcCCcHHHHHHHHHH-HHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHH
Confidence 777888888999888886 788999999999999999999999999999999998875 4577889999999984
Q ss_pred hC--CHHHHHHHHHHHHhhcCCCHHHH
Q 001064 512 SR--NAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 512 ~g--~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
.| ++.-||++|.++|+++|.+..-|
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 33 78899999999999999654333
No 150
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=2.4e-08 Score=109.38 Aligned_cols=166 Identities=10% Similarity=-0.070 Sum_probs=139.0
Q ss_pred CCCcccccccCCCCchHHHHHHHHHHhCCCCH---HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHH
Q 001064 66 GAAAGQELVDGSAMSGEEDRLWNIVKANSSDF---SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG---YWKKY 139 (1167)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~---~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~---~W~~~ 139 (1167)
....+..+...++++.++..|+++++.+|.+. ++|+.++..+... +++++|+..|+++++.+|++.. .|...
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS--GDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 34444445455899999999999999999876 6889999998874 8999999999999999998876 68888
Q ss_pred HHHHHHh--------CCHHHHHHHHHHHHhccCCCHHHHHHH-----------------HHHHHhhcCCHHHHHHHHHHH
Q 001064 140 ADHEARV--------GSMDKVVEVYERAVQGVTYSVDIWLHY-----------------CIFAINTYGDPETIRRLFERG 194 (1167)
Q Consensus 140 a~~e~~~--------~~~e~A~~l~eraL~~~P~s~~lw~~y-----------------a~~~~~~~~~~~~Ar~~fera 194 (1167)
+..+.+. +++++|++.|++++..+|.+...|..+ +.+++ ..|++++|...|+++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYL-KRGAYVAAINRFETV 192 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHH
Confidence 8888765 789999999999999999987665333 34444 569999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001064 195 LAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 195 l~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
+...|.++.....|...+......|++++|..+++.+...
T Consensus 193 l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 193 VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9988877777789999999999999999999988877554
No 151
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.93 E-value=7.8e-08 Score=100.99 Aligned_cols=167 Identities=14% Similarity=0.165 Sum_probs=145.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 001064 373 VVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE 452 (1167)
Q Consensus 373 a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~ 452 (1167)
+...+=+....+|.+.++ ..++..+...|+-+....++..+...+ ++...++..++....+.|++.+|...+.++ ..
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA-~~ 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKA-AR 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHH-hc
Confidence 444444555566999999 999988888899999888888876655 778888888999999999999999999998 89
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 453 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 453 ~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+.|++.++|...+-.+.+.|+++.|+.-|.+++++.+++ |.++.+++.+++. .|+++.|+.++.++...-+.+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------p~~~nNlgms~~L-~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE------PSIANNLGMSLLL-RGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC------chhhhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999764 6688888888776 999999999999999988888
Q ss_pred HHHHHHHHHhHhhCCCh
Q 001064 533 KPLLEALIHFESIQSSP 549 (1167)
Q Consensus 533 ~~l~~~~~~~e~~~~~~ 549 (1167)
..+-.+++..-...++.
T Consensus 202 ~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 202 SRVRQNLALVVGLQGDF 218 (257)
T ss_pred hHHHHHHHHHHhhcCCh
Confidence 88888888887777773
No 152
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=3.8e-09 Score=118.41 Aligned_cols=84 Identities=32% Similarity=0.444 Sum_probs=74.8
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhC------C-Ceee
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS------P-IQLA 1099 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~------~-~~i~ 1099 (1167)
++..+++|||+|||+++|+++|.++|++||+|+.+. ++.++.||+++|+|||.|.+..++..||.+- | +.|.
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~-iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI-IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEE-EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 445689999999999999999999999999999986 4889999999999999999999999999762 3 7899
Q ss_pred CcEeEEEeccCC
Q 001064 1100 GRQVYIEERRPN 1111 (1167)
Q Consensus 1100 g~~l~V~~~r~~ 1111 (1167)
||.|+|..+-+|
T Consensus 367 GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 367 GRLLKVTLAVTR 378 (678)
T ss_pred ccEEeeeeccch
Confidence 999999766443
No 153
>smart00362 RRM_2 RNA recognition motif.
Probab=98.92 E-value=4.4e-09 Score=91.02 Aligned_cols=71 Identities=34% Similarity=0.573 Sum_probs=62.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+|||+|||..++.++|+++|++||.|..+.+ ..+. +.++|+|||+|.+.+++..|+.. ++..++|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~-~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKI-PKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999998764 3333 67889999999999999999987 6899999998873
No 154
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.92 E-value=4.6e-08 Score=120.98 Aligned_cols=154 Identities=12% Similarity=-0.063 Sum_probs=141.8
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 80 SGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERA 159 (1167)
Q Consensus 80 ~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~era 159 (1167)
.+++.++...++..|.+.++...|+++.... +..++|..+++++++..|++..++..++..+.+.+.+++|...++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~--g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAA--HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567778888999999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred HhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhH
Q 001064 160 VQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQL 239 (1167)
Q Consensus 160 L~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~ 239 (1167)
|...|++....+.++..+. ..|.+++|..+|++++. .++.....|..|+..++..|+.++|...|++++.......
T Consensus 147 l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred hhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 9999999999999999998 78999999999999998 4445688999999999999999999999999999744433
No 155
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.90 E-value=4.1e-09 Score=126.01 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=65.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-CcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~-g~~l~V 1105 (1167)
.+++|||+|||.++++++|+++|++||.|.+++| +++ .+|+++|||||+|.+.++|++||+. ++..|. |+.|.|
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl-~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRL-MMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEE-EEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 4699999999999999999999999999999875 456 7899999999999999999999987 777774 665544
No 156
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.90 E-value=4.2e-09 Score=129.19 Aligned_cols=80 Identities=23% Similarity=0.352 Sum_probs=73.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||..+|+++|+++|+.||.|+.+.| +++..+|+++|||||+|.+.++|..||.. +|+.|+|+.|+|.++
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~-~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL-IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3589999999999999999999999999999875 66778899999999999999999999976 899999999999987
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 64
No 157
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.88 E-value=4.5e-08 Score=96.95 Aligned_cols=115 Identities=14% Similarity=0.214 Sum_probs=107.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001064 84 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 163 (1167)
Q Consensus 84 ~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 163 (1167)
+.|+++++.+|.+.++.+.++..+... ++.++|...|++++..+|.+..+|..++.++.+.+++++|+.+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468899999999999999999988874 799999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 164 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 164 P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
|.+.+.|+.++.++. ..|++++|...|+++++..|.+
T Consensus 82 p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 82 PDDPRPYFHAAECLL-ALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred CCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccc
Confidence 999999999999888 7899999999999999976654
No 158
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.88 E-value=2.9e-09 Score=122.32 Aligned_cols=81 Identities=21% Similarity=0.324 Sum_probs=75.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
+.|||||+|+++++++|.++|+..|.|.++++ +.|+.||+.|||||++|.+.+++..|++. ||.+++||+|+|+++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~-v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRL-VYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeee-cccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999999999999999999999999885 78999999999999999999999999988 89999999999999876
Q ss_pred CCC
Q 001064 1111 NTG 1113 (1167)
Q Consensus 1111 ~~~ 1113 (1167)
+..
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 543
No 159
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=1.2e-09 Score=115.99 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=70.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
-++||||.|.+.+.++.||..|..||+|+++++ --|..|+++||||||+|+-++.++-|++. ||..++||.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInM-SWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINM-SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeec-ccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 389999999999999999999999999999875 33788999999999999999999999987 899999999999743
No 160
>smart00360 RRM RNA recognition motif.
Probab=98.87 E-value=6.9e-09 Score=89.38 Aligned_cols=70 Identities=36% Similarity=0.575 Sum_probs=62.0
Q ss_pred EecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1036 VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1036 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
|+|||..+++++|+++|++||.|..+.+ ..++.+++++|+|||+|.+.+++..|+.. ++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i-~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRL-VRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEE-EeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999875 34555688999999999999999999987 6899999998874
No 161
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.87 E-value=5.9e-09 Score=126.02 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=73.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||..+|+++|+++|++||.|..|.+ +++..+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~-~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQL-HRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 489999999999999999999999999999875 56777889999999999999999999976 8999999999999976
Q ss_pred C
Q 001064 1110 P 1110 (1167)
Q Consensus 1110 ~ 1110 (1167)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 162
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=5.3e-08 Score=114.11 Aligned_cols=214 Identities=13% Similarity=0.062 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001064 316 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 395 (1167)
Q Consensus 316 ~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya 395 (1167)
..+.+++...+-..+|+..||+ +.+|-..+.+|...|+..+|.....+-+. .+.++-+|..++
T Consensus 402 ~~laell~slGitksAl~I~Er----------------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFER----------------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHh----------------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 3344556666666667777765 46799999999988988888877777777 577777888777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH
Q 001064 396 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE 475 (1167)
Q Consensus 396 ~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e 475 (1167)
+++... .+|++|.++....+..+...++.....++++.++.+.+++. .+++|.....|+.++.+..+++++.
T Consensus 465 Dv~~d~-------s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~s-l~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDP-------SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERS-LEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccCh-------HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHH-hhcCccchhHHHhccHHHHHHhhhH
Confidence 766433 45666666654455666677777777789999999999998 7999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHH
Q 001064 476 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFL 555 (1167)
Q Consensus 476 ~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~a 555 (1167)
.+...|.+++...|++ .+.|.+++..+.+ .|+..+|+..+++|++.+..+..+|++|..+-...+.- +-+
T Consensus 537 ~av~aF~rcvtL~Pd~------~eaWnNls~ayi~-~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~---eda 606 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDN------AEAWNNLSTAYIR-LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF---EDA 606 (777)
T ss_pred HHHHHHHHHhhcCCCc------hhhhhhhhHHHHH-HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH---HHH
Confidence 9999999999999754 6789888888666 89999999999999999999999999999998887763 335
Q ss_pred HHHHHHHhh
Q 001064 556 EQLVDKFLM 564 (1167)
Q Consensus 556 r~l~eral~ 564 (1167)
.++|.+.+.
T Consensus 607 ~~A~~rll~ 615 (777)
T KOG1128|consen 607 IKAYHRLLD 615 (777)
T ss_pred HHHHHHHHH
Confidence 555555543
No 163
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.86 E-value=9.4e-08 Score=108.94 Aligned_cols=154 Identities=16% Similarity=0.240 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q 001064 81 GEEDRLWNIVKANSSDFSAWTALLEETEKLAQ----------DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMD 150 (1167)
Q Consensus 81 ~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~----------~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e 150 (1167)
+....|++.|+.||.|.++|..|+.+-..+.. .-.++-..+|++||+.+|++..+|+.|.+...+..+.+
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 45677999999999999999999998776421 11346678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHhcCCCCC---------------CHHHHHHHHH
Q 001064 151 KVVEVYERAVQGVTYSVDIWLHYCIFAINTYG--DPETIRRLFERGLAYVGTDYL---------------SFPLWDKYIE 213 (1167)
Q Consensus 151 ~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~--~~~~Ar~~feral~~~g~d~~---------------s~~lw~~y~~ 213 (1167)
+..+.++++|..+|.+..||..|+.|...... .++.++.+|.++|.....-.. -..+...+..
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985333 578999999999976442111 1356777888
Q ss_pred HHHHhhhHHHHHHHHHHHHhc
Q 001064 214 YEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 214 ~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
|+...|-.++|..+++-+|+.
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHH
Confidence 888999999999999999986
No 164
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=9.2e-09 Score=90.51 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=66.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..+-|||+|||+++|.+++-++|++||.|..|+| .. +...+|-|||.|++..+|++|+.. +|..+.++.+.|-.-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRi--G~--~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRI--GN--TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEe--cC--ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4688999999999999999999999999998654 22 234689999999999999999987 899999999999764
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
.
T Consensus 93 q 93 (124)
T KOG0114|consen 93 Q 93 (124)
T ss_pred C
Confidence 4
No 165
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=1e-08 Score=112.78 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=69.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee-eCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-AGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i-~g~~l~V~ 1106 (1167)
.|+-||||.||.++.|++|..+|++.|+|-++++ ++++.+|.+||||||+|.+.+.|+.||+. |+++| .|+.|.|.
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRL-MmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRL-MMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEE-eecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 5799999999999999999999999999999986 66888999999999999999999999987 78877 47777764
No 166
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.82 E-value=6.8e-06 Score=91.01 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=122.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
|...++=....++.+....++++.-....+++++-..|+..+..+|+.++|.++...+++.. -++.+...+..+ +-
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~--~D~~L~~~~~~l--~~ 307 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ--WDPRLCRLIPRL--RP 307 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc--cChhHHHHHhhc--CC
Confidence 44333332333445555667777666667889999999999999999999999999999854 345544433322 35
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 516 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~ 516 (1167)
++...-.+..++. +...|+++.+++.++.++.+.+.+.+|...|+.||+..+. ..-|.-+++.+.. .|+..
T Consensus 308 ~d~~~l~k~~e~~-l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-------~~~~~~la~~~~~-~g~~~ 378 (400)
T COG3071 308 GDPEPLIKAAEKW-LKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-------ASDYAELADALDQ-LGEPE 378 (400)
T ss_pred CCchHHHHHHHHH-HHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-------hhhHHHHHHHHHH-cCChH
Confidence 6777778888887 6779999999999999999999999999999999998754 2345667777665 99999
Q ss_pred HHHHHHHHHHhh
Q 001064 517 KARQILVDSLDH 528 (1167)
Q Consensus 517 ~Ar~i~~kal~~ 528 (1167)
+|-.+++++|-+
T Consensus 379 ~A~~~r~e~L~~ 390 (400)
T COG3071 379 EAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHH
Confidence 999999999854
No 167
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=1.7e-08 Score=111.03 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=66.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.-+-|||+||+.++|++.|+++|++||.|.+|.. + |-||||.|.+.++|.+|++. ||..|+|..|.|..+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk-~--------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK-P--------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeec-c--------cceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 4578999999999999999999999999998642 2 34999999999999999987 899999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+|..
T Consensus 329 KP~~ 332 (506)
T KOG0117|consen 329 KPVD 332 (506)
T ss_pred CChh
Confidence 8643
No 168
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.78 E-value=1.9e-08 Score=112.99 Aligned_cols=78 Identities=32% Similarity=0.542 Sum_probs=72.1
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||.++++++|+++|++||.|..+.+ ..++.+|+++|||||+|.+.+++..|+.. ++..|.|+.|.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~-~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRL-VRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEe-eeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 599999999999999999999999999998875 45667899999999999999999999988 6899999999999854
No 169
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=2.1e-08 Score=109.72 Aligned_cols=82 Identities=18% Similarity=0.378 Sum_probs=71.5
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeC--cE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAG--RQ 1102 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~g--~~ 1102 (1167)
.|.+.-++|||-||..++|.||+.+|++||.|.+|.| ++|+.||.++|||||.|.+.+++.+|+.+ |-+.|-| ..
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl-~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINL-IKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEe-ecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 3456789999999999999999999999999999975 88999999999999999999999999987 5666765 45
Q ss_pred eEEEecc
Q 001064 1103 VYIEERR 1109 (1167)
Q Consensus 1103 l~V~~~r 1109 (1167)
|.|.++.
T Consensus 109 vqvk~Ad 115 (510)
T KOG0144|consen 109 VQVKYAD 115 (510)
T ss_pred eeecccc
Confidence 7777664
No 170
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.76 E-value=9.8e-09 Score=100.09 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=73.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+..+||||||+..++++-|.++|-+.|+|.+++| -+++.+...+|||||+|.+.++++=|++. |.+.+-||+|+|..+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~i-PkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHI-PKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeec-chhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5689999999999999999999999999999875 56788888999999999999999999988 889999999999887
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1e-06 Score=97.19 Aligned_cols=272 Identities=11% Similarity=-0.005 Sum_probs=196.4
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
..|..++..+-.+++..|++...|..-+..+..+ ++++.+.--+++.+...|..........+.....++..+|.+.|
T Consensus 63 k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~--~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPDNASYYSNRAATLMML--GRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred hhHHHHHHHHHHHHHhCccchhhhchhHHHHHHH--HhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 5788899999999999999999999766666654 78999999999999999999988888888888888888887777
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLS---FPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s---~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
+ +.+.. ....+...+++.+ +.+... ...-+.=...+.-++.++.|..+=-++++
T Consensus 141 ~--------~~~~~------------~~anal~~~~~~~---~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 141 K--------SKQAY------------KAANALPTLEKLA---PSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred h--------hhhhh------------HHhhhhhhhhccc---ccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 6 11111 0122223333333 344321 11122222333445778888877777888
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
+...+.+.++-...
T Consensus 198 ld~~n~~al~vrg~------------------------------------------------------------------ 211 (486)
T KOG0550|consen 198 LDATNAEALYVRGL------------------------------------------------------------------ 211 (486)
T ss_pred cccchhHHHHhccc------------------------------------------------------------------
Confidence 77777766662211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCC------------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS------------VTELENWHNYLDFIERDGDFNKVVKLYERCL 381 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld------------~~~~~~W~~y~~~~e~~g~~~~a~~~yeral 381 (1167)
++.-....+.++..|+++|+ ++ +..+..|..-+.-.-++|.+..|-..|..+|
T Consensus 212 -------~~yy~~~~~ka~~hf~qal~--------ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 212 -------CLYYNDNADKAINHFQQALR--------LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred -------ccccccchHHHHHHHhhhhc--------cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 11112233445555666665 44 3456677777776678899999999999999
Q ss_pred HhcCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC
Q 001064 382 IACANYPE----YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG 456 (1167)
Q Consensus 382 ~~~p~~~~----~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~ 456 (1167)
.++|++.+ ++...+....++|+..+|+...++|+.+. +...+.++..|..+...+++++|..-|+++ .++..+
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a-~q~~~s 353 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKA-MQLEKD 353 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccc
Confidence 99998764 67777888888999999999999999987 778888889999999999999999999998 444433
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.74 E-value=2.5e-07 Score=91.19 Aligned_cols=113 Identities=7% Similarity=0.049 Sum_probs=103.7
Q ss_pred HHHHhC-CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 88 NIVKAN-SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 88 ~~l~~n-P~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
-+.... +++.+..+.++-.+.. .|+++.|.++|+-++..+|.+..+|+.++-.+...|++++|+..|.+++.+.|++
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~--~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLME--VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 344567 8889999999988876 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC
Q 001064 167 VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL 203 (1167)
Q Consensus 167 ~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~ 203 (1167)
+....+.+..++ ..|+.+.|++.|+.++..++.++.
T Consensus 103 p~~~~~ag~c~L-~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 103 PQAPWAAAECYL-ACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred chHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999998 789999999999999999876543
No 173
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=9.3e-09 Score=112.39 Aligned_cols=83 Identities=24% Similarity=0.333 Sum_probs=71.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CC-CeeeCc--EeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP-IQLAGR--QVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~-~~i~g~--~l~V 1105 (1167)
+.++||||-|+..+||.+++++|++||.|++|.| +|+. .|.+||||||.|.+.+.|..||+. || ..+.|. +|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~i-lrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYI-LRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhh-eecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 3589999999999999999999999999999986 5554 478999999999999999999988 64 567775 5999
Q ss_pred EeccCCCCC
Q 001064 1106 EERRPNTGS 1114 (1167)
Q Consensus 1106 ~~~r~~~~~ 1114 (1167)
.|+.+.+++
T Consensus 201 kFADtqkdk 209 (510)
T KOG0144|consen 201 KFADTQKDK 209 (510)
T ss_pred EecccCCCc
Confidence 999877654
No 174
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.73 E-value=2.8e-08 Score=119.96 Aligned_cols=72 Identities=28% Similarity=0.420 Sum_probs=64.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEeEEEe
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l~V~~ 1107 (1167)
++.|||+|||+++++++|+++|++||.|.+|.| ++ .||||||+|++.++|.+||.. ++..|+|+.|+|.+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i-~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMM-LP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE-EC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 589999999999999999999999999999865 32 458999999999999999974 68999999999998
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
+.
T Consensus 75 s~ 76 (481)
T TIGR01649 75 ST 76 (481)
T ss_pred cC
Confidence 64
No 175
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=2.6e-06 Score=100.27 Aligned_cols=206 Identities=17% Similarity=0.199 Sum_probs=104.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAA 251 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~ 251 (1167)
.++..++ ..|=...|..+|||.- .|..-+.++...|+..+|..|..+-++.++. ..+|...-.+..
T Consensus 403 ~laell~-slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d--~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 403 LLAELLL-SLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELEKDPD--PRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHH-HcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhcCCCc--chhHHHhhhhcc
Confidence 4455555 4566667777777544 5777778888888888888888777775554 233422211100
Q ss_pred cCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH-----HHHH
Q 001064 252 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY-----KKAK 326 (1167)
Q Consensus 252 ~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y-----~~~~ 326 (1167)
.. .-.|.+. ++-+++..+...| ...+
T Consensus 469 d~-----s~yEkaw--------------------------------------------Elsn~~sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 469 DP-----SLYEKAW--------------------------------------------ELSNYISARAQRSLALLILSNK 499 (777)
T ss_pred Ch-----HHHHHHH--------------------------------------------HHhhhhhHHHHHhhccccccch
Confidence 00 0000000 0111222221111 1234
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL 406 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~ 406 (1167)
+|.++.+.|+..++ ++|-+.+.|+.++-...+.+++..+...|.+|+...|++.+.|.+++..+...++..+
T Consensus 500 ~fs~~~~hle~sl~--------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 500 DFSEADKHLERSLE--------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred hHHHHHHHHHHHhh--------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence 55555555555554 4555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 407 AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 407 A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
|...+++|++.. -.+..+|..|-.+....|.++.|...|.+.
T Consensus 572 a~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 572 AFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 555555555543 444455555555555555555555555553
No 176
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.73 E-value=2.9e-07 Score=91.15 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=61.7
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
++|.+...-..++..+...|++++|+..|++++..+|.++.+|+.++.++...|++++|..+|++++... |.++..|+.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 90 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFH 90 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 4444444444555555555566666666666665556556666666655555555666666666555554 455555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
++.++...|++++|...|+++ ++++|++..
T Consensus 91 la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~ 120 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLA-IEICGENPE 120 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhccccch
Confidence 555555555666665555555 455555443
No 177
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2.9e-08 Score=111.45 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=71.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
..+|+|+|||+.+...+|+.+|+.||.|..|.| ..+..|+..|||||.|.+..+|..||+. |+..|+||+|-|+|+-
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I--P~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI--PRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEc--ccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 589999999999999999999999999999654 4555677779999999999999999988 8999999999999986
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 554
No 178
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.71 E-value=7.2e-08 Score=83.79 Aligned_cols=72 Identities=35% Similarity=0.650 Sum_probs=62.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+|+|+|||..+++++|+++|+.||.|..+.+. .+. .++++|+|||+|.+.+++..|+.. ++..++|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~-~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIV-RDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEe-eCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 48999999999999999999999999987653 333 336789999999999999999987 6888999999886
No 179
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.70 E-value=1.8e-06 Score=90.97 Aligned_cols=168 Identities=18% Similarity=0.124 Sum_probs=145.2
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
.+|....+ .++..-+.-.|+-+....+..+.+...+.+.++...++..+...|++.+|...+.++.... |++.++|..
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNL 139 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhH
Confidence 35666777 7777776777888888888888888889999998889999999999999999999999987 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
++..+.+.|++++|+..|.++ +++.|+.+.+..+++..+.-.|+++.|+.++.++....+.+ ..+-.+++...
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qA-l~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad------~~v~~NLAl~~ 212 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQA-LELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD------SRVRQNLALVV 212 (257)
T ss_pred HHHHHHHccChhHHHHHHHHH-HHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc------hHHHHHHHHHH
Confidence 999999999999999999999 89999999999999999999999999999999998876532 45666777664
Q ss_pred HHHhCCHHHHHHHHHHHH
Q 001064 509 HLVSRNAEKARQILVDSL 526 (1167)
Q Consensus 509 ~~~~g~~~~Ar~i~~kal 526 (1167)
- ..|++++|+++-..-+
T Consensus 213 ~-~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 213 G-LQGDFREAEDIAVQEL 229 (257)
T ss_pred h-hcCChHHHHhhccccc
Confidence 4 4999999999866544
No 180
>smart00361 RRM_1 RNA recognition motif.
Probab=98.69 E-value=5.2e-08 Score=84.24 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=52.9
Q ss_pred HHHHHHHHh----cCCCceeeeEeeecCCC--cccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1045 AFEIEEEFQ----NFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1045 ~~~l~~~F~----~~G~i~~v~i~~~~~~~--g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+++|+++|+ +||.|.++...+.++.+ |+++|||||+|.+.++|.+|+.. +|..++|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578999998 99999997522445555 88999999999999999999987 8999999999863
No 181
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.68 E-value=1.4e-07 Score=114.04 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=68.1
Q ss_pred CCccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1029 GEVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
.++++|||+||++ .+|+++|+++|+.||.|.+|+|+ ++ .+|||||+|.+.++|..||.. +|..|.|+.|+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~-~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFM-KN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEE-eC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 3578999999998 69999999999999999998763 33 258999999999999999976 8999999999999
Q ss_pred eccCC
Q 001064 1107 ERRPN 1111 (1167)
Q Consensus 1107 ~~r~~ 1111 (1167)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 87654
No 182
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.68 E-value=3.1e-08 Score=96.63 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=73.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+.+||||||.+.+++..|.+.|+.||.|...--.+++..||.++|||||.|.+.+...+||.. ||..++.++|+|+.+.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 589999999999999999999999999876433467888999999999999999999999988 8999999999999887
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
.+.
T Consensus 176 k~~ 178 (203)
T KOG0131|consen 176 KKD 178 (203)
T ss_pred ecC
Confidence 653
No 183
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.68 E-value=5.8e-08 Score=103.36 Aligned_cols=89 Identities=26% Similarity=0.326 Sum_probs=78.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.+.+||||+.+.+|.++++.+|+.||.|..++| ..++.+|++|||+||+|.+.+.+..++..++..|.|+.+.|..
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti-~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTV-PKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceee-eccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 345699999999999999999999999999998876 4577788899999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 001064 1108 RRPNTGSTSR 1117 (1167)
Q Consensus 1108 ~r~~~~~~~~ 1117 (1167)
.+.+.++.++
T Consensus 177 ~r~~~pg~~~ 186 (231)
T KOG4209|consen 177 KRTNVPGMGR 186 (231)
T ss_pred eeeecCCcCC
Confidence 9887554443
No 184
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7.2e-08 Score=102.65 Aligned_cols=80 Identities=25% Similarity=0.417 Sum_probs=74.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+...|||..|.+-+++++|.-+|+.||.|.+|.| +++++||.+-.||||+|++.+++++|.-. .++.|++++|.|++.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceV-IRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEV-IRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeE-EecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4588999999999999999999999999999997 89999999999999999999999999855 789999999999986
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 53
No 185
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=7.8e-05 Score=98.54 Aligned_cols=211 Identities=11% Similarity=0.008 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----CHHHHHHH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-----YPEYWIRY 394 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~-----~~~~w~~y 394 (1167)
.++...+++..|...+++++....-+..+..+.....+...+..+...|++++|..++++++..... ....+...
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 3455667777777777776652100000000111122334455556679999999999999876331 23345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhccC-hHHHH-----HHHHHHHHcCCHHHHHHHHHHHhhhcCCChH----HHHHHH
Q 001064 395 VLCMEASGSMDLAHNALARATHVFVKRL-PEIHL-----FAARFKEQNGDIDGARAAYQLVHTETSPGLL----EAIIKH 464 (1167)
Q Consensus 395 a~~l~~~g~~e~A~~vl~rA~~~~~p~~-~~l~~-----~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~----~~~~~~ 464 (1167)
+.++...|+.+.|...+.++..+..... ...+. .....+...|+.+.|...+... ....+... ..+...
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~-~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQA-PKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhc-CCCCCccchhHHHHHHHH
Confidence 7777889999999999999987642211 11111 1123344578999999988775 22221111 224567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+.++...|++++|+.+|++++..............++..++..++. .|+.++|+..+.+|++.....
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~-~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ-QGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhCcc
Confidence 7778889999999999999999754321112223456677877766 999999999999999977543
No 186
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.65 E-value=7.7e-05 Score=82.87 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
.+-..|+..+.+.|+.+.|..+.+.+|+.. .++. .+.++..+ .-++.+.-.+..++.++.+ |++|.++..++.+..
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-~D~~-L~~~~~~l-~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~ 339 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQ-WDPR-LCRLIPRL-RPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLAL 339 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cChh-HHHHHhhc-CCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHH
Confidence 445556666666677777777777777663 2333 22222222 2355556666666666666 666777777777777
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
+++.+.+|...|+.+ +...| +...|.-.+..+.++|+..+|..++++++...
T Consensus 340 k~~~w~kA~~~leaA-l~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 340 KNKLWGKASEALEAA-LKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HhhHHHHHHHHHHHH-HhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 777777777777766 44444 33445555666667777777777777776543
No 187
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=6.8e-08 Score=103.42 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=68.8
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeCcEeE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVY 1104 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~g~~l~ 1104 (1167)
.|...++||||+|...+++.+|+++|.+||+|+++.+.. .++||||+|.+..+|+.|.+. +.+.|+|++|+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-------ccccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 344679999999999999999999999999999976533 346999999999999999977 68999999999
Q ss_pred EEeccCC
Q 001064 1105 IEERRPN 1111 (1167)
Q Consensus 1105 V~~~r~~ 1111 (1167)
|.+.++.
T Consensus 297 i~Wg~~~ 303 (377)
T KOG0153|consen 297 IKWGRPK 303 (377)
T ss_pred EEeCCCc
Confidence 9999883
No 188
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.65 E-value=2.3e-08 Score=113.36 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=70.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+..+||||||.+++++++|+.+|+.||.|..|.+ .++..||++||||||+|.+.+++++|++. ||++|-|+.|+|...
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l-~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQL-TKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeee-ccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 3455999999999999999999999999999864 45666999999999999999999999866 899999999998654
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
.
T Consensus 356 ~ 356 (549)
T KOG0147|consen 356 T 356 (549)
T ss_pred e
Confidence 4
No 189
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=0.00025 Score=84.05 Aligned_cols=162 Identities=12% Similarity=0.030 Sum_probs=89.1
Q ss_pred ccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------hhhHHHH
Q 001064 47 NEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA--------QDNIVKI 118 (1167)
Q Consensus 47 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~--------~~~~~~a 118 (1167)
+++..|-..+|.+++--.. +.-=+++.-.|.++.|+..++-+- .-..|..+++.+-+.. -|+...|
T Consensus 713 ~pLrdFvgle~Cd~~TRka-ml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~a 786 (1416)
T KOG3617|consen 713 KPLRDFVGLENCDESTRKA-MLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA 786 (1416)
T ss_pred hhHHHhcCccccCHHHHHh-hhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhh
Confidence 4556666677777766522 222334444488888877654332 3457888888776621 0223333
Q ss_pred H--HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 119 R--RVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 119 r--~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
| ++++++. .+|+..+ -+.+-+.+..|-+++|..+|++|-+.+ |. -+++. ..|.+++|.++-|.-
T Consensus 787 RgaRAlR~a~-q~~~e~e--akvAvLAieLgMlEeA~~lYr~ckR~D-----Ll---NKlyQ-s~g~w~eA~eiAE~~-- 852 (1416)
T KOG3617|consen 787 RGARALRRAQ-QNGEEDE--AKVAVLAIELGMLEEALILYRQCKRYD-----LL---NKLYQ-SQGMWSEAFEIAETK-- 852 (1416)
T ss_pred hhHHHHHHHH-hCCcchh--hHHHHHHHHHhhHHHHHHHHHHHHHHH-----HH---HHHHH-hcccHHHHHHHHhhc--
Confidence 3 2333333 2343222 355666677788888888888886642 22 23333 456666665554311
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001064 197 YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 231 (1167)
Q Consensus 197 ~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~ 231 (1167)
...| -...+..|+.++...++++.|...|++.
T Consensus 853 -DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 853 -DRIH--LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred -ccee--hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 1111 2235666777777777777777777664
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=3.7e-07 Score=97.63 Aligned_cols=111 Identities=21% Similarity=0.151 Sum_probs=95.9
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
=+.+.++|.+|+..|.++ ++++|.++-.|+.++..+.++|.++.|++-.+.||.++| .+...|..++..++.
T Consensus 90 ~~m~~~~Y~eAv~kY~~A-I~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp------~yskay~RLG~A~~~- 161 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEA-IELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP------HYSKAYGRLGLAYLA- 161 (304)
T ss_pred HHHHhhhHHHHHHHHHHH-HhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHc-
Confidence 344678999999999999 899999999999999999999999999999999999985 346788888877665
Q ss_pred hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChh
Q 001064 512 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK 550 (1167)
Q Consensus 512 ~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~ 550 (1167)
.|++++|...|++||+++|++..++..+-.-+..+..+.
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999887777776665443
No 191
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.58 E-value=6.2e-08 Score=101.03 Aligned_cols=71 Identities=25% Similarity=0.512 Sum_probs=65.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
.+|||||||..+++.+|+.+|++||+|..|+| | |.||||..++...++.||.. +|..|+|..|+|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI-v--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI-V--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee-e--------cccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 47999999999999999999999999999986 4 46999999999999999985 89999999999998876
Q ss_pred C
Q 001064 1111 N 1111 (1167)
Q Consensus 1111 ~ 1111 (1167)
+
T Consensus 74 K 74 (346)
T KOG0109|consen 74 K 74 (346)
T ss_pred c
Confidence 6
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=9.4e-07 Score=95.43 Aligned_cols=122 Identities=15% Similarity=0.038 Sum_probs=111.4
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG---SMDKVV 153 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~---~~e~A~ 153 (1167)
..++.-+.+++..|..||.|.+.|..|++.+..+ ++...|...|.+++.+.|++.++|..|++.+..+. ...++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 4577888999999999999999999999999984 89999999999999999999999999999988654 367899
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
.+|+++|+.+|.++.....++.-++ ..|++.+|...++..|+..+.+
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~af-e~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAF-EQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999988888888 6799999999999999988765
No 193
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.55 E-value=3.6e-07 Score=112.22 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=61.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCcee------eeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP------DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQ 1102 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~------v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~ 1102 (1167)
...++|||||||+++|+++|+++|..++.+.. +. .+.+...++.+|||||+|.+.++|..||.++|+.|.|+.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~-~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~ 251 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGK-HVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVF 251 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCC-ceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCce
Confidence 35699999999999999999999997521110 00 011222345689999999999999999988999999999
Q ss_pred eEEEec
Q 001064 1103 VYIEER 1108 (1167)
Q Consensus 1103 l~V~~~ 1108 (1167)
|+|...
T Consensus 252 l~v~r~ 257 (509)
T TIGR01642 252 LKIRRP 257 (509)
T ss_pred eEecCc
Confidence 999643
No 194
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.55 E-value=2.4e-07 Score=102.22 Aligned_cols=82 Identities=18% Similarity=0.393 Sum_probs=74.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++||||+||.++++.++++.|.+||.|..+.+ +.|..+.+.+||+||+|.+.+++.+++...-+.|+|+.+.|..+-
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~-~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVI-MYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEE-eecccccccccceeeEeccccccceecccceeeecCceeeEeecc
Confidence 3579999999999999999999999998888754 557788999999999999999999999888999999999998887
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 175 pk~ 177 (311)
T KOG4205|consen 175 PKE 177 (311)
T ss_pred chh
Confidence 664
No 195
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.52 E-value=3.8e-07 Score=75.05 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=46.2
Q ss_pred HHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1048 IEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1048 l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
|.++|++||.|.++.+ ..+. +|+|||+|.+.++|..|++. +|..++|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~--~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKI--FKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEE--ETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEE--EeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999999999654 2221 58999999999999999986 999999999999874
No 196
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.48 E-value=9.4e-08 Score=105.37 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=74.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++||||+|+++++++.|++.|++||+|.+|.| ++++.+++++||+||+|++.+.+.++|....+.|.|+.|.+..+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~v-m~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVV-MRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEE-eccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 5699999999999999999999999999999964 789999999999999999999999999888999999998887765
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 543
No 197
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=4.8e-06 Score=94.59 Aligned_cols=140 Identities=12% Similarity=0.024 Sum_probs=122.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH
Q 001064 88 NIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV 167 (1167)
Q Consensus 88 ~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~ 167 (1167)
.....+|.-..+|+..+...... +.++.|++.++.+++..|+|..+|...++++++.|+..+|.+.|+++|...|++.
T Consensus 297 ~~~~~~~~~~aa~YG~A~~~~~~--~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 297 LAKRSKRGGLAAQYGRALQTYLA--GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP 374 (484)
T ss_pred HHHHhCccchHHHHHHHHHHHHh--cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Confidence 34444588999999887776653 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 168 DIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 168 ~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
-+|+.|++.++ ..|++.+|..++.+.+...+ .....|..+++-...+|+..++..-+-..+.
T Consensus 375 ~l~~~~a~all-~~g~~~eai~~L~~~~~~~p---~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 375 LLQLNLAQALL-KGGKPQEAIRILNRYLFNDP---EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHH-hcCChHHHHHHHHHHhhcCC---CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999 78999999999999998544 4578999999999999988888766655543
No 198
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.48 E-value=1.7e-07 Score=99.13 Aligned_cols=95 Identities=20% Similarity=0.377 Sum_probs=87.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001064 121 VYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 200 (1167)
Q Consensus 121 ~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~ 200 (1167)
.|.|....||.++.+|..|+....+.+.+.+...+|..||+.||.++|||+..|.++++..++++.+|.+|.++|. .
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR---~ 171 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR---M 171 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc---c
Confidence 4567778899999999999999999999999999999999999999999999999999888999999999999999 5
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 001064 201 DYLSFPLWDKYIEYEYMQ 218 (1167)
Q Consensus 201 d~~s~~lw~~y~~~e~~~ 218 (1167)
+..++.||..|.++|+..
T Consensus 172 N~~~p~iw~eyfr~El~y 189 (435)
T COG5191 172 NSRSPRIWIEYFRMELMY 189 (435)
T ss_pred CCCCchHHHHHHHHHHHH
Confidence 666899999999999874
No 199
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.47 E-value=6.4e-07 Score=100.62 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=71.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.-++.|||.+|...+...+|+.+|++||.|.-.+| |.+-.+--.+|||||++.+.++|.++|+. +.+.|.|+.|.|+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKV-VTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKV-VTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceee-eecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 35789999999999999999999999999988776 44544444689999999999999999987 68999999999998
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++.-+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 87544
No 200
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=5.3e-05 Score=86.33 Aligned_cols=138 Identities=11% Similarity=-0.035 Sum_probs=102.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
+.....|+-.+.-....|++++|+..+...+... |+++.++...++++.+.++.++|.+.++++ +.+.|+..-+|+.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka-l~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKA-LALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HhcCCCccHHHHHH
Confidence 5666777777766666777888888887777766 777777777788888888888888888887 67788877778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
++.+.+.|+..+|+.++.+.+..+|. +|..|..+++.+.. .|+..+|...+-+++.+...
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~------dp~~w~~LAqay~~-~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPE------DPNGWDLLAQAYAE-LGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCC------CchHHHHHHHHHHH-hCchHHHHHHHHHHHHhCCC
Confidence 88888888888888888877777653 36677777777554 77777777777766665544
No 201
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.44 E-value=3.1e-07 Score=98.06 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=72.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.-.+|||..+.++.+++||+.+|+-||+|++|.+ .+...++.+||||||+|.+..+...||.. |-+.++|+.|+|-..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~L-Ar~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEe-eccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 3579999999999999999999999999999984 67777788999999999999999999977 789999999999765
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
-.
T Consensus 288 vT 289 (544)
T KOG0124|consen 288 VT 289 (544)
T ss_pred cC
Confidence 43
No 202
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.42 E-value=3.7e-06 Score=97.51 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=68.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
-|..+...|++++|+..|.+|+.+. |+++.+|+.++.++...|++++|+..++++ ++++|++..+|+.++.++..+|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A-l~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKA-IELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCCHHHHHHHHHHHHHhCC
Confidence 3444455677777777777777765 666777777777777777777777777776 66777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhhC
Q 001064 474 LEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 474 ~e~A~~~~~kAl~~~~~ 490 (1167)
+++|+..|++++.+.|+
T Consensus 86 ~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 86 YQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 77788888887777764
No 203
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.39 E-value=6.2e-06 Score=79.24 Aligned_cols=109 Identities=18% Similarity=0.073 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001064 424 EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 500 (1167)
Q Consensus 424 ~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l 500 (1167)
++++..+..+.+.|++++|...|+++ +...|++ ..+++.++.++.+.|++++|+.+|++++...|+. +..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAF-LKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---PKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---CcccHH
Confidence 45566666677777777777777776 4556654 4567777777777778888888888877776542 222456
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHH
Q 001064 501 YAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 537 (1167)
Q Consensus 501 ~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~ 537 (1167)
+..++.++.. .|++++|..+|+++++..|++.....
T Consensus 79 ~~~~~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 79 LLKLGMSLQE-LGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHH-hCChHHHHHHHHHHHHHCcCChhHHH
Confidence 6667777655 77788888888888888777765443
No 204
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=1.1e-05 Score=79.83 Aligned_cols=100 Identities=21% Similarity=0.177 Sum_probs=83.1
Q ss_pred CC-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHH
Q 001064 349 LS-VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 349 ld-~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
++ ++.++....|+-.+...|+++.|..+|+-....+|.+.+.|+.++.++...|++++|+..|.+|+.+. |+++..++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~ 107 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPW 107 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence 44 55566677777777778888888888888888888888888888888888888888888888888877 78888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 001064 428 FAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
..+..+...|+.+.|++.|+.+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888887
No 205
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.37 E-value=7.7e-07 Score=89.24 Aligned_cols=79 Identities=27% Similarity=0.329 Sum_probs=68.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcC-CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNF-GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..-+||+.+|+.+.+..+..+|.+| |.|..++ +-|++.||.+||||||+|++.+.|.-|-+. |+..|.|+.|.|.+-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~r-lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFR-LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEE-eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 4678999999999999999999998 6666654 458999999999999999999999988876 899999999888764
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
-+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 43
No 206
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.37 E-value=2.4e-06 Score=99.06 Aligned_cols=92 Identities=7% Similarity=-0.010 Sum_probs=56.1
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
++++.|++.|.++|+.+|.+..+|+.++..+..+ +++++|+..++++|.++|++..+|+.++.++...|+++.|+..|
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~--g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKL--GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5566666666666666666666666666665553 55666666666666666666666666666666666666666666
Q ss_pred HHHHhccCCCHHHH
Q 001064 157 ERAVQGVTYSVDIW 170 (1167)
Q Consensus 157 eraL~~~P~s~~lw 170 (1167)
++||.+.|.+..+.
T Consensus 94 ~~al~l~P~~~~~~ 107 (356)
T PLN03088 94 EKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHhCCCCHHHH
Confidence 66666666554443
No 207
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=4.7e-06 Score=89.35 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
+.-..+.++|.+|+..|.++|+ ++|.+.-.+.+-+..+.+.|.++.|++-.+.||..+|++...|.+++..+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3344555666666666666665 55555555555555555666666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccChHH
Q 001064 399 EASGSMDLAHNALARATHVFVKRLPEI 425 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~~~l 425 (1167)
..+|++++|...|++|+++. |++...
T Consensus 160 ~~~gk~~~A~~aykKaLeld-P~Ne~~ 185 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELD-PDNESY 185 (304)
T ss_pred HccCcHHHHHHHHHhhhccC-CCcHHH
Confidence 66666666666666666655 444433
No 208
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.34 E-value=3.9e-06 Score=89.02 Aligned_cols=80 Identities=28% Similarity=0.353 Sum_probs=70.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+.-..+|+|.|||+.|+++||+++|..||.++.+- +.-...|++.|.|=|.|...++|.+|++. +++.++|+.++++
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~--vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVA--VHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEe--eccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 33448899999999999999999999999888854 55566799999999999999999999988 8999999999987
Q ss_pred ecc
Q 001064 1107 ERR 1109 (1167)
Q Consensus 1107 ~~r 1109 (1167)
...
T Consensus 158 ~i~ 160 (243)
T KOG0533|consen 158 IIS 160 (243)
T ss_pred Eec
Confidence 654
No 209
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.00043 Score=82.24 Aligned_cols=86 Identities=22% Similarity=0.208 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 386 NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 386 ~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
.++.+|-=+++|++..|++|.|+.+|..|-. |+...++++-+|+.++|..+-+. .++..+.+-++
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhla 974 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLA 974 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHH
Confidence 4456888888888888888888888877754 34455556667777777765443 24555666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 001064 466 NMERRLGNLEDAFSLYEQAIA 486 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~ 486 (1167)
..++..|++-+|...|.+|-.
T Consensus 975 R~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHHHH
Confidence 777888888888887776644
No 210
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00096 Score=72.51 Aligned_cols=304 Identities=12% Similarity=0.121 Sum_probs=169.6
Q ss_pred HhCCHHHHHHHHHHHHhccC---CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhH
Q 001064 145 RVGSMDKVVEVYERAVQGVT---YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW 221 (1167)
Q Consensus 145 ~~~~~e~A~~l~eraL~~~P---~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~ 221 (1167)
...++..|+.+++-.+...- ++.++|+.+|.|- +|++++|...|+.+... +--...+|..++-...=.|.+
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh---LgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH---LGDYEEALNVYTFLMNK---DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh---hccHHHHHHHHHHHhcc---CCCCcccchhHHHHHHHHHHH
Confidence 34567777777766664432 4788999999994 59999999999998873 222346777666544445668
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcc
Q 001064 222 SRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPV 301 (1167)
Q Consensus 222 ~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~ 301 (1167)
.+|..+-.++-+.|..+ ..+|....++
T Consensus 108 ~eA~~~~~ka~k~pL~~-RLlfhlahkl---------------------------------------------------- 134 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCI-RLLFHLAHKL---------------------------------------------------- 134 (557)
T ss_pred HHHHHHHhhCCCChHHH-HHHHHHHHHh----------------------------------------------------
Confidence 88877766665555542 1222221111
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001064 302 SAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCL 381 (1167)
Q Consensus 302 ~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral 381 (1167)
.+.++|. .|...+. |. .+--..++...-..-.+.+|+.+|.|+|
T Consensus 135 ----ndEk~~~---------------------~fh~~Lq---------D~--~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 135 ----NDEKRIL---------------------TFHSSLQ---------DT--LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred ----CcHHHHH---------------------HHHHHHh---------hh--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111 1111111 00 0001111111111124778999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH--cCCHHHHHHHHHHHhhhcCCChHH
Q 001064 382 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ--NGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 382 ~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~--~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
..+|.+..+=..+|.++.+..-++-+.+++.--+..+ |+++-...+.+-.+.+ +|+..++. ...+....+...+
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E--~k~ladN~~~~~~- 254 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDE--KKELADNIDQEYP- 254 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHH--HHHHHhcccccch-
Confidence 9999888888888888888887887877777777777 6666555554433333 45443332 1221111121111
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHH
Q 001064 460 AIIKHANMERRL-----GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 534 (1167)
Q Consensus 460 ~~~~~a~~e~r~-----g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~ 534 (1167)
.+....|. .+-+.|..++--.+... |+.-.+++-+..+ .+++++|..+.+. +.|..+.
T Consensus 255 ----f~~~l~rHNLVvFrngEgALqVLP~L~~~I---------PEARlNL~iYyL~-q~dVqeA~~L~Kd---l~PttP~ 317 (557)
T KOG3785|consen 255 ----FIEYLCRHNLVVFRNGEGALQVLPSLMKHI---------PEARLNLIIYYLN-QNDVQEAISLCKD---LDPTTPY 317 (557)
T ss_pred ----hHHHHHHcCeEEEeCCccHHHhchHHHhhC---------hHhhhhheeeecc-cccHHHHHHHHhh---cCCCChH
Confidence 22222222 23356666666655554 4455555545344 8899999988774 4677763
Q ss_pred HHH----HHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 535 LLE----ALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 535 l~~----~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
-+. .++.+....++.+.++.+.+.|..+-.
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~ 351 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGE 351 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence 332 233344444555566666666665533
No 211
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.31 E-value=1.5e-06 Score=88.87 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=69.6
Q ss_pred CccEEEEecCCCCCCHHHHHH----HHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEE----EFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~----~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++.+|||.||+..+..++|+. +|++||.|.+|. -.++.+.+|-|||.|.+.+.|-.|+.. +|+.+-|+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~----a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDIS----AFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEE----ecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 445999999999999999988 999999998743 234678999999999999999999987 79999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|.+++.+.
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99988654
No 212
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.30 E-value=4.7e-07 Score=105.67 Aligned_cols=81 Identities=25% Similarity=0.379 Sum_probs=71.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.++.|+|+|||+.++..+++.+|+.||.|++|+|... ...+.++|||||+|-++.++.+|+.. ..+.+-||+|.++++
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 4789999999999999999999999999999887554 34466799999999999999999987 578899999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
...
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 753
No 213
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.6e-06 Score=99.47 Aligned_cols=73 Identities=25% Similarity=0.468 Sum_probs=65.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.|||+||+.+++..+|.++|+.||.|.+|++..+ ..| +||| ||+|++.++|++||.. ||..++|+.|.|....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~--~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD--ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc--CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 3999999999999999999999999999987443 234 8999 9999999999999988 8999999999996543
No 214
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.27 E-value=0.0036 Score=82.87 Aligned_cols=283 Identities=9% Similarity=0.018 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----H--HH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----P--EY 390 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~-~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~----~--~~ 390 (1167)
+..++...++++.+...+++++.. ....+. .....+..++..+...|++++++.++++++...... . ..
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAE----LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 344566677888888888888762 011111 112234445555677899999999999999763321 1 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc----CC-ChH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKR-------LPEIHLFAARFKEQNGDIDGARAAYQLVHTET----SP-GLL 458 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-------~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~----~P-~~~ 458 (1167)
+..++..+...|++++|...+++++.+.... ...++...+.++...|++++|+..+.+++ .+ .+ ...
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al-~~~~~~~~~~~~ 612 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL-EVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH-HhhhccCchHHH
Confidence 4556677778999999999999998865321 11234456777888899999999999873 32 12 133
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHH--
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA-QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPL-- 535 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~-~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l-- 535 (1167)
..+...+.+....|++++|...+++++........ ........ ......+...|+.+.|..++............+
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY-HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc-cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 44566777888999999999999999887542110 00000111 111122334789999999988776533222211
Q ss_pred --HHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 536 --LEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 536 --~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+..++......+. .+.+..++++++....... ..-....+...+...+...|+.+.......+..++....
T Consensus 692 ~~~~~~a~~~~~~g~---~~~A~~~l~~al~~~~~~g---~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 692 GQWRNIARAQILLGQ---FDEAEIILEELNENARSLR---LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhC---chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 2334444444454 4456777777765422111 112344556667777888999999999999999988653
No 215
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.27 E-value=3.8e-05 Score=87.70 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=121.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHH
Q 001064 375 KLYERCLIACANYPEYWIRYVLCMEASGS------------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGA 442 (1167)
Q Consensus 375 ~~yeral~~~p~~~~~w~~ya~~l~~~g~------------~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A 442 (1167)
.-|++.+..+|++.+.|+.|+.+....-. .+.-+.+|++|++.+ |++..+++.+-....+..+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 45778888889999999999987765422 345677899999987 78999999998888888888888
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhhCCCccC------------chHHHHHHHHHH
Q 001064 443 RAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYEQAIAIEKGKEHSQ------------TLPMLYAQYSRF 507 (1167)
Q Consensus 443 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---g~~e~A~~~~~kAl~~~~~~~~~~------------~~~~l~~~~a~~ 507 (1167)
.+.++++ +..+|++..+|..|.++.... -.++.++.+|.++|.......... ..-.++..+..|
T Consensus 85 ~~~we~~-l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 85 AKKWEEL-LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHH-HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 8889997 677999999999999987652 358899999999998765322211 223356788999
Q ss_pred HHHHhCCHHHHHHHHHHHHhhc
Q 001064 508 LHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 508 ~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
+.. .|-.+.|..+|+-.|+++
T Consensus 164 l~~-aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 164 LRQ-AGYTERAVALWQALLEFN 184 (321)
T ss_pred HHH-CCchHHHHHHHHHHHHHH
Confidence 877 999999999999999975
No 216
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=9.1e-06 Score=73.29 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
.|+.++..+.. .+++++|...|++++...|.+...|..++.++...+++++|+++|++++...|.+..+|..++.++.
T Consensus 2 ~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYK--LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHH--HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 46667776665 3678888888888888888887888888888888888888888888888888877778888877777
Q ss_pred hhcCCHHHHHHHHHHHHHh
Q 001064 179 NTYGDPETIRRLFERGLAY 197 (1167)
Q Consensus 179 ~~~~~~~~Ar~~feral~~ 197 (1167)
..++++.|+..|++++..
T Consensus 80 -~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 -KLGKYEEALEAYEKALEL 97 (100)
T ss_pred -HHHhHHHHHHHHHHHHcc
Confidence 567788888888877763
No 217
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=4.3e-05 Score=76.68 Aligned_cols=117 Identities=21% Similarity=0.143 Sum_probs=99.8
Q ss_pred HcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC---hHHHHHHHHHHHHcCCH
Q 001064 366 RDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDI 439 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~---~~l~~~~a~~~e~~g~~ 439 (1167)
..++...+...+++.+...|.. ...++.++..+...|++++|...|+.++... ++. +.+++.++.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence 4788889999999999998888 4578888999999999999999999999865 332 45777889999999999
Q ss_pred HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 440 DGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAI 485 (1167)
Q Consensus 440 ~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl 485 (1167)
++|+..++.+ .-.+-...++...++++.+.|++++|+..|++||
T Consensus 102 d~Al~~L~~~--~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQI--PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhc--cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999774 3344456678899999999999999999999985
No 218
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.24 E-value=1.3e-05 Score=80.78 Aligned_cols=84 Identities=25% Similarity=0.322 Sum_probs=67.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---CcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~---g~~l~V 1105 (1167)
..++|||.+||.++...+|..+|..|---....+...++...-++-+|||+|.+..+|.+|+.+ ||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3599999999999999999999998855555444444443334567999999999999999988 899987 667999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
+.++.+..
T Consensus 113 ElAKSNtK 120 (284)
T KOG1457|consen 113 ELAKSNTK 120 (284)
T ss_pred eehhcCcc
Confidence 99987654
No 219
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.21 E-value=2.3e-06 Score=100.55 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=67.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+++||||+|+..+++.+|+++|+.||.|.+|.+ + .++|||||......+|.+|+.+ +.+.+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-I------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-c------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 689999999999999999999999999999753 2 2578999999999999999988 7899999999999987
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
.+.
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 654
No 220
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=5e-05 Score=76.24 Aligned_cols=116 Identities=10% Similarity=0.078 Sum_probs=97.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC---HHHHHHHHHHHHhhcCCHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS---VDIWLHYCIFAINTYGDPE 185 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s---~~lw~~ya~~~~~~~~~~~ 185 (1167)
.++...+...++++++.+|.. ...++.++..+...|++++|...|++++...|+. .-.++.++.+++ ..++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHH
Confidence 368888999999999999999 5778888999999999999999999999977543 346677777877 689999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001064 186 TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 232 (1167)
Q Consensus 186 ~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l 232 (1167)
+|+..++... ........+...++.+...|+++.|+..|+++|
T Consensus 103 ~Al~~L~~~~----~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIP----DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhcc----CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999996632 334456788899999999999999999999875
No 221
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.20 E-value=1.7e-06 Score=89.56 Aligned_cols=72 Identities=26% Similarity=0.516 Sum_probs=63.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
..+|||+||+.+.+.+|+.+|..||.|.++.+ ..||+||+|++..+|..|+.. ++..|+|-.+.|+.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---------ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 47899999999999999999999999998653 237999999999999999976 89999998899999886
Q ss_pred CC
Q 001064 1111 NT 1112 (1167)
Q Consensus 1111 ~~ 1112 (1167)
..
T Consensus 73 ~~ 74 (216)
T KOG0106|consen 73 KR 74 (216)
T ss_pred cc
Confidence 53
No 222
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.19 E-value=3.3e-06 Score=98.86 Aligned_cols=78 Identities=21% Similarity=0.339 Sum_probs=67.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g--~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++|||+||++++|.++|..+|.+.|.|.++.|..+.+..+ .+.|||||+|.+.++|+.|+.. +|+.|+|+.|.|...
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 4499999999999999999999999999987654332211 2459999999999999999998 799999999999888
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 223
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=2.6e-05 Score=74.89 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC---HHHH
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS---VDIW 170 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s---~~lw 170 (1167)
.+.++.++..+.. .+++++|.+.|++++..+|++ ...++.++.++.+.++++.|+.+|++++..+|.+ ..+|
T Consensus 2 ~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLK--AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 3567777777776 478888888888888888876 4678888888888888888888888888887764 5677
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
+..+..+. ..+++++|...|++++...|.+
T Consensus 80 ~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 80 LKLGMSLQ-ELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHH-HhCChHHHHHHHHHHHHHCcCC
Confidence 77777777 5788888888888888866554
No 224
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.18 E-value=1.7e-05 Score=71.49 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=45.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
|...+..+...|++++++.+|++++...|.+..+|..++.++...+++++|...|++++... +....++..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555555555555555555555444 33444444444444444
Q ss_pred CCHHHHHHHHHHH
Q 001064 437 GDIDGARAAYQLV 449 (1167)
Q Consensus 437 g~~~~A~~~~~~a 449 (1167)
|++++|...+.++
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 5555555444443
No 225
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.15 E-value=2.6e-06 Score=89.17 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=67.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|+||||.+.++.++|+..|.+||+|..++| + |+|+||.|+-.+++..||.. ++.+|.|++++|...
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdi-v--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI-V--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeee-e--------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 4589999999999999999999999999999886 3 46999999999999999977 899999999999887
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
..|-+
T Consensus 148 tsrlr 152 (346)
T KOG0109|consen 148 TSRLR 152 (346)
T ss_pred ccccc
Confidence 66543
No 226
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.14 E-value=1.4e-06 Score=89.71 Aligned_cols=80 Identities=24% Similarity=0.319 Sum_probs=66.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CC-CeeeCc--EeEEE
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP-IQLAGR--QVYIE 1106 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~-~~i~g~--~l~V~ 1106 (1167)
.++||||-|...-+|+|++.+|..||.|.+|.+ ++ ...|.+|||+||.|.+..+++.||.. +| ..+-|- .|.|.
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tv-lr-g~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTV-LR-GPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEE-ec-CCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 489999999999999999999999999999875 33 44588999999999999999999987 43 445453 48898
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
++...+
T Consensus 97 ~ADTdk 102 (371)
T KOG0146|consen 97 FADTDK 102 (371)
T ss_pred eccchH
Confidence 886543
No 227
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.14 E-value=7.5e-06 Score=69.63 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=48.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV 167 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~ 167 (1167)
.++..+.. .|++++|+++|+++++.+|.+..+|+.++.++..+|++++|+.+|++++...|+++
T Consensus 2 ~~a~~~~~--~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQ--QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHH--CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHH--cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 34555554 37888888888888888888888888888888888888888888888888877763
No 228
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.13 E-value=3.2e-06 Score=87.01 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=72.8
Q ss_pred CCCCCCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCc
Q 001064 1023 SLGLDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR 1101 (1167)
Q Consensus 1023 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~ 1101 (1167)
+..+.+..-.+||.|.|..+++++.|...|.+|-.....++ ++++.||+++|||||.|.+..++..|+.. +|..++.|
T Consensus 182 sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akv-iRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 182 SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKV-IRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred ccccCccccceeecccccccccHHHHHHHHHhccchhhccc-cccccccccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 34455566789999999999999999999999987776665 78999999999999999999999999977 79999999
Q ss_pred EeEEE
Q 001064 1102 QVYIE 1106 (1167)
Q Consensus 1102 ~l~V~ 1106 (1167)
.|+..
T Consensus 261 piklR 265 (290)
T KOG0226|consen 261 PIKLR 265 (290)
T ss_pred hhHhh
Confidence 88774
No 229
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.12 E-value=8.2e-05 Score=77.08 Aligned_cols=130 Identities=11% Similarity=0.000 Sum_probs=101.8
Q ss_pred HHHHHhCC--CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 001064 87 WNIVKANS--SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQ 161 (1167)
Q Consensus 87 ~~~l~~nP--~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~ 161 (1167)
...+..++ .....++.++..+.. .+++++|...|++++...|+. ..+|..++.++.+.|++++|+..|++++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQA--DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444 455566788888776 489999999999999987764 46899999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHH
Q 001064 162 GVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDR 241 (1167)
Q Consensus 162 ~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~ 241 (1167)
..|.+...|..++..+. ..++...+...++.++. .+++|..+|++++...+.++..
T Consensus 101 ~~p~~~~~~~~lg~~~~-~~g~~~~a~~~~~~A~~-----------------------~~~~A~~~~~~a~~~~p~~~~~ 156 (172)
T PRK02603 101 LNPKQPSALNNIAVIYH-KRGEKAEEAGDQDEAEA-----------------------LFDKAAEYWKQAIRLAPNNYIE 156 (172)
T ss_pred hCcccHHHHHHHHHHHH-HcCChHhHhhCHHHHHH-----------------------HHHHHHHHHHHHHhhCchhHHH
Confidence 99999999998888877 56777666666665553 3677888888888887776533
Q ss_pred H
Q 001064 242 Y 242 (1167)
Q Consensus 242 ~ 242 (1167)
.
T Consensus 157 ~ 157 (172)
T PRK02603 157 A 157 (172)
T ss_pred H
Confidence 3
No 230
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.11 E-value=4.6e-06 Score=91.48 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=65.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
...++|||+|||+++|+..|++-|..||.|..++| + ..|+++| .|.|.++++|+.|+.. +|..++||.|+|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-m---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-M---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhh-h---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 35688999999999999999999999999999876 2 2456776 8999999999999988 89999999999975
No 231
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.10 E-value=1.5e-05 Score=68.69 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhccC
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG-SMDKVVEVYERAVQGVT 164 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~-~~e~A~~l~eraL~~~P 164 (1167)
+...|..++..+.. .+++++|+..|+++|..+|++..+|..++.++..+| ++++|++.|+++|++.|
T Consensus 2 ~a~~~~~~g~~~~~--~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ--QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56677777777776 367788888888888888888888888888887777 67788888888877765
No 232
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.09 E-value=8.9e-06 Score=73.19 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRR 189 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~ 189 (1167)
+++++.|..+|+++++..|. +..+|+.+|..+.+.|++++|..++++ +...+.+.+.++.+++.+. ..+++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLL-KLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHH-HTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH-HhCCHHHHHH
Confidence 36889999999999999995 467899999999999999999999999 8778888888888888888 6899999999
Q ss_pred HHHHH
Q 001064 190 LFERG 194 (1167)
Q Consensus 190 ~fera 194 (1167)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 233
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0088 Score=65.30 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=98.2
Q ss_pred ccccccCCCCchHHHHHHHHHHhCCC---CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 001064 70 GQELVDGSAMSGEEDRLWNIVKANSS---DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV 146 (1167)
Q Consensus 70 ~~~~~~~~~~~~a~~~l~~~l~~nP~---d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~ 146 (1167)
+-+|.. .++..|+..|+-.+..+-. +.+.|........ |++++|...|+.+....--+.++|..++-...-.
T Consensus 30 edfls~-rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL----gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 30 EDFLSN-RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL----GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHhc-ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh----ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH
Confidence 334444 6888888888877765544 4556665555433 7999999999999987766789999999999999
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHH
Q 001064 147 GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAM 226 (1167)
Q Consensus 147 ~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~ 226 (1167)
|.|.+|..+-++|-+ .|....|.++.+.- .++-++. -.|..-|+..-. ..|-..-+.+.. -.+.+|+.
T Consensus 105 g~Y~eA~~~~~ka~k-~pL~~RLlfhlahk----lndEk~~-~~fh~~LqD~~E----dqLSLAsvhYmR--~HYQeAId 172 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK-TPLCIRLLFHLAHK----LNDEKRI-LTFHSSLQDTLE----DQLSLASVHYMR--MHYQEAID 172 (557)
T ss_pred HHHHHHHHHHhhCCC-ChHHHHHHHHHHHH----hCcHHHH-HHHHHHHhhhHH----HHHhHHHHHHHH--HHHHHHHH
Confidence 999999999988866 46777776666543 2332222 333333331111 122222222222 34778888
Q ss_pred HHHHHHhcch
Q 001064 227 IYTRILENPI 236 (1167)
Q Consensus 227 iy~r~l~~p~ 236 (1167)
+|.|+|...+
T Consensus 173 vYkrvL~dn~ 182 (557)
T KOG3785|consen 173 VYKRVLQDNP 182 (557)
T ss_pred HHHHHHhcCh
Confidence 8888887544
No 234
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.09 E-value=1.1e-05 Score=69.19 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
+|++++|.+.|++++..+|++..+|+.++.++++.|++++|+.++++++...|++..+|..+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999999999998888877665
No 235
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.08 E-value=4.5e-05 Score=85.40 Aligned_cols=204 Identities=15% Similarity=0.128 Sum_probs=138.8
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-A-NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-p-~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+..+...+.|+.|+....+.+.++..++..+... . .++-+.+-.|.++...|++++|++++.+. .+.+....
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3445667777887755456666666665544332 1 22334444455666679999998877654 35677778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEA--IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 506 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~--~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~ 506 (1167)
...++.+.++++.|.+.++.+ .+++.+..-+ ...|+.+....+++.+|.-+|+...+..+. .+.++...+.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~-~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~------t~~~lng~A~ 209 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNM-QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS------TPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--------SHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC------CHHHHHHHHH
Confidence 888899999999999999997 7777776543 344444444445799999999997665432 2667777777
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 507 FLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 507 ~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.... .|++++|.++++++++.+|+++..+.+.+-+....|.+. +.+++++.......|+.+
T Consensus 210 ~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~--~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 210 CHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT--EAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC--HHHHHHHHHCHHHTTTSH
T ss_pred HHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHhCCCCh
Confidence 7555 999999999999999999999999988888877776542 234556665555555443
No 236
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.07 E-value=1.5e-05 Score=68.58 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q 001064 422 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 422 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~~~~kAl~~~~ 489 (1167)
++.+|...|..+...|++++|+..|+++ ++++|++..+|+.++.++.++| ++++|+..|+++|+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a-i~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKA-IELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHH-HHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567777888888888888888888887 6778888888888888888887 68888888888887764
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=98.04 E-value=0.00015 Score=83.33 Aligned_cols=151 Identities=8% Similarity=0.081 Sum_probs=119.1
Q ss_pred ChHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 369 DFNKVVKLYERCL---IACANYPEYWIRYVLCMEA---------SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 369 ~~~~a~~~yeral---~~~p~~~~~w~~ya~~l~~---------~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
+.++|+.+|+||+ ..+|.+...+..++.++.. .....+|....++|+++. +.++.++...+.++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4568999999999 8888888765555544332 124567888999999987 89999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 516 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~ 516 (1167)
++++.|...|+++ ..++|+.+.+|+.++.++.-.|+.++|+..+++|+.+.|.+- ...+..-+.+. |. ...++
T Consensus 352 ~~~~~a~~~f~rA-~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~----~~~~~~~~~~~-~~-~~~~~ 424 (458)
T PRK11906 352 GQAKVSHILFEQA-KIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR----KAVVIKECVDM-YV-PNPLK 424 (458)
T ss_pred cchhhHHHHHHHH-hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh----HHHHHHHHHHH-Hc-CCchh
Confidence 9999999999999 899999999999999998889999999999999999997431 11222233333 33 55688
Q ss_pred HHHHHHHHHHh
Q 001064 517 KARQILVDSLD 527 (1167)
Q Consensus 517 ~Ar~i~~kal~ 527 (1167)
+|.++|-+--+
T Consensus 425 ~~~~~~~~~~~ 435 (458)
T PRK11906 425 NNIKLYYKETE 435 (458)
T ss_pred hhHHHHhhccc
Confidence 88888876543
No 238
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=0.00024 Score=79.91 Aligned_cols=171 Identities=12% Similarity=0.176 Sum_probs=96.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH
Q 001064 362 DFIERDGDFNKVVKLYERCLIACAN--Y----PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 435 (1167)
Q Consensus 362 ~~~e~~g~~~~a~~~yeral~~~p~--~----~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~ 435 (1167)
..+...+++++|...|.+|..+.-. + ...|...+.++.+. +.++|..+|++|+.++ ..
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y---------------~~ 106 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIY---------------RE 106 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH---------------Hh
Confidence 3445667788888888887766321 1 12445555544333 6677777777776654 34
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001064 436 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL-GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 514 (1167)
Q Consensus 436 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~-g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 514 (1167)
.|++..|-.++.++ +.++... |++++|+.+|++|++..............+.+++.+..+ .|+
T Consensus 107 ~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-l~~ 170 (282)
T PF14938_consen 107 AGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-LGR 170 (282)
T ss_dssp CT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TT-
T ss_pred cCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-hCC
Confidence 55555555554443 4555555 778888888888888765432212223456677777665 788
Q ss_pred HHHHHHHHHHHHhhcCCC-------HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 515 AEKARQILVDSLDHVQLS-------KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 515 ~~~Ar~i~~kal~~~p~~-------~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
+++|.++|++.....-++ ..++...+...+..++ ...+++.|+++....+
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD---YVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 888888888877643221 1333333444444444 4457777887766543
No 239
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00017 Score=78.22 Aligned_cols=121 Identities=18% Similarity=0.092 Sum_probs=109.5
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc---CCHHHHHHH
Q 001064 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN---GDIDGARAA 445 (1167)
Q Consensus 369 ~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~---g~~~~A~~~ 445 (1167)
+.++.+.-.+.-|..+|.+.+=|..++.++..+|++..|...|.+|+.+. +++++++..++..+..+ .+..++..+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 46788888999999999999999999999999999999999999999987 89999999999877653 345779999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 446 YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 446 ~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
++++ +.++|.+....+.++.-....|++.+|...++..+...|.+
T Consensus 216 l~~a-l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 216 LRQA-LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHH-HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9998 78999999998888888889999999999999999999764
No 240
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.02 E-value=1.2e-05 Score=86.43 Aligned_cols=80 Identities=25% Similarity=0.252 Sum_probs=69.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceee------eEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPD------GVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1102 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~ 1102 (1167)
.++.|||.|||.++|.+++.++|++||-|.+- +|.+.....|+.||-|.|.|-..+++.-|++. ++..|+|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 46889999999999999999999999988753 23333334589999999999999999999998 799999999
Q ss_pred eEEEecc
Q 001064 1103 VYIEERR 1109 (1167)
Q Consensus 1103 l~V~~~r 1109 (1167)
|+|+.++
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999876
No 241
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.01 E-value=0.00019 Score=86.80 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=108.6
Q ss_pred hhhHHHHHHHHHHH--HHc---CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh
Q 001064 351 VTELENWHNYLDFI--ERD---GDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS--------GSMDLAHNALARATHV 417 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~--e~~---g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~--------g~~e~A~~vl~rA~~~ 417 (1167)
+.+.+.|..|+.-. ... ++..+|+.+|++|+..+|.+..+|-.++.++... .+...+...+.+++.+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 45567777776533 222 3467999999999999999998888766544332 1234556666666664
Q ss_pred h-hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 418 F-VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 418 ~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
. .+..+.+|..++......|++++|...|+++ ++++|+ ...|..++.++...|+.++|...|++|+.+.|.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA-l~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKA-IDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 1 3566789999998888899999999999999 899994 789999999999999999999999999999975
No 242
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.00 E-value=2.6e-05 Score=70.21 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=55.7
Q ss_pred cCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~--~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
+|+++.|+.+|++++...|. +..+|+.+|.++...|++++|..++++ .... +.+..+++.+|..+.+.|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777778887777774 355677777777777777777777777 4444 4556666667777777777777777
Q ss_pred HHHH
Q 001064 445 AYQL 448 (1167)
Q Consensus 445 ~~~~ 448 (1167)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=9.8e-05 Score=82.71 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=104.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
-+.-+..+-+.|++..|...|+||+....+.. .-+.++..... ++. ..+|+.++..+.+.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~~--~~k------~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKAE--ALK------LACHLNLAACYLKL 270 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHHH--HHH------HHHhhHHHHHHHhh
Confidence 44556777788899999999999886532111 11112222111 111 23667788888899
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 516 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~ 516 (1167)
+++.+|+..++++ +++.|+|..++++.+..+..+|+++.|+..|++++++.|.+ -.+...++.+--+.....+
T Consensus 271 ~~~~~Ai~~c~kv-Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N------ka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 271 KEYKEAIESCNKV-LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN------KAARAELIKLKQKIREYEE 343 (397)
T ss_pred hhHHHHHHHHHHH-HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 78999999999999999999999999999999999998754 3466666655444333445
Q ss_pred HHHHHHHHHHhhcC
Q 001064 517 KARQILVDSLDHVQ 530 (1167)
Q Consensus 517 ~Ar~i~~kal~~~p 530 (1167)
+.+++|.+.+....
T Consensus 344 kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 344 KEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccc
Confidence 56777777776543
No 244
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.97 E-value=2.4e-05 Score=66.51 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 138 KYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 138 ~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
.++..+.+.|++++|+++|+++|+.+|.+.++|+.++.++. ..|++++|+..|+++++..|.+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCC
Confidence 57889999999999999999999999999999999999999 7899999999999999977764
No 245
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.95 E-value=0.00022 Score=86.19 Aligned_cols=145 Identities=11% Similarity=0.026 Sum_probs=108.2
Q ss_pred HhcCCCHHHHHHHHHHHHH--c---CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 001064 382 IACANYPEYWIRYVLCMEA--S---GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN--------GDIDGARAAYQL 448 (1167)
Q Consensus 382 ~~~p~~~~~w~~ya~~l~~--~---g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~--------g~~~~A~~~~~~ 448 (1167)
..-|.+.++|-.|...+.. . ++.+.|+.+|++|+++. |++...|-.++..+... .++..+....++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3446666766666654332 2 24678999999999987 88888877766544332 123455555555
Q ss_pred Hhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 001064 449 VHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSL 526 (1167)
Q Consensus 449 a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal 526 (1167)
+ .. .+|.++.+|..++......|++++|...|++|+.+.+. ...|..+|.++.. .|+.++|...|++|+
T Consensus 410 a-~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-------~~a~~~lG~~~~~-~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 410 I-VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-------WLNYVLLGKVYEL-KGDNRLAADAYSTAF 480 (517)
T ss_pred h-hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4 33 36777788888888888899999999999999999852 4578888888766 999999999999999
Q ss_pred hhcCCCHHHH
Q 001064 527 DHVQLSKPLL 536 (1167)
Q Consensus 527 ~~~p~~~~l~ 536 (1167)
.++|..+.++
T Consensus 481 ~L~P~~pt~~ 490 (517)
T PRK10153 481 NLRPGENTLY 490 (517)
T ss_pred hcCCCCchHH
Confidence 9999987433
No 246
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.94 E-value=3.1e-05 Score=84.49 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=73.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeee------E-eeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDG------V-FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1099 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i-~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~ 1099 (1167)
....-+|||-+||..+++.+|.++|.+||.|+.-+ | +.+++.|++.||-|.|.|+|...++.||.. ++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44678999999999999999999999999987531 1 134678999999999999999999999988 799999
Q ss_pred CcEeEEEeccCCCC
Q 001064 1100 GRQVYIEERRPNTG 1113 (1167)
Q Consensus 1100 g~~l~V~~~r~~~~ 1113 (1167)
|..|+|..+..+.+
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999988876654
No 247
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00016 Score=83.57 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=106.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC
Q 001064 358 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 437 (1167)
Q Consensus 358 ~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g 437 (1167)
..++.+....++++.|+.+|++..... ++++..++.++...++..+|..++.+++... |.+..++...+.|+...+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 334566677789999999999988775 4577888888888888899999999999877 788999999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001064 438 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 482 (1167)
Q Consensus 438 ~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~ 482 (1167)
+++.|+.+.+++ +++.|+....|..++.++..+|+++.|...+.
T Consensus 249 ~~~lAL~iAk~a-v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 249 KYELALEIAKKA-VELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred CHHHHHHHHHHH-HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999998 89999999999999999999999999987766
No 248
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=9.5e-05 Score=76.27 Aligned_cols=101 Identities=21% Similarity=0.178 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVFVK--RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p--~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
..+|+..+.++...|++++|...|++++.+.+. ....+|..++.++...|++++|+..|+++ +.++|.+...|...+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A-l~~~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA-LERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCcCcHHHHHHHH
Confidence 456777777777777777777777777766521 12346777777777777777777777776 566777777666666
Q ss_pred HHHH-------HcCCHH-------HHHHHHHHHHHhhh
Q 001064 466 NMER-------RLGNLE-------DAFSLYEQAIAIEK 489 (1167)
Q Consensus 466 ~~e~-------r~g~~e-------~A~~~~~kAl~~~~ 489 (1167)
.++. ++|+++ ++..+|++++...|
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 6666 666666 44555555555554
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=97.93 E-value=0.00017 Score=82.85 Aligned_cols=123 Identities=10% Similarity=-0.020 Sum_probs=106.9
Q ss_pred CCchHHHHHHHHH---HhCCCCHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 001064 78 AMSGEEDRLWNIV---KANSSDFSAWTALLEETEKL-------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG 147 (1167)
Q Consensus 78 ~~~~a~~~l~~~l---~~nP~d~~aw~~L~~~~~~~-------~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~ 147 (1167)
...+|+..|.+++ ..+|....+|-.|+...... .+.+..+++.+-+++++.+|.+..+....+.+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4467888999999 99999988887776655442 1467788999999999999999999999999888888
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 148 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 148 ~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
+++.+..+|+|++.+.|++.+.|+.++-... ..|+.++|++.++++++..|..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~-~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHF-HNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCchh
Confidence 8999999999999999999999999988777 7899999999999999966654
No 250
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.92 E-value=0.00012 Score=75.62 Aligned_cols=99 Identities=10% Similarity=-0.017 Sum_probs=82.1
Q ss_pred CCchHHHHHHHHHHhCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHH
Q 001064 78 AMSGEEDRLWNIVKANSSD--FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKV 152 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~nP~d--~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A 152 (1167)
.+...-+.|...++.+..+ ...|+.++..+... +++++|...|++++...|+. ...|..++.++...|++++|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSE--GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 3455555665566677776 77788899888764 79999999999999998774 35899999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 153 VEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 153 ~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
+..|++++...|...+.|...+.++.
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 99999999999999888888877766
No 251
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.92 E-value=0.00018 Score=74.58 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=91.0
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
+.+...+..++..+...|++++|+..|++++...+.. ..+|+.++.++...|++++|+..|.+++... |+....+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 4445667778888889999999999999999876553 4689999999999999999999999999987 77888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
.++.++...|+...+..-++.+ + ..+++|..++++++...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A-~--------------------~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA-E--------------------ALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH-H--------------------HHHHHHHHHHHHHHhhCch
Confidence 8898888888765555444443 1 1245566666666666653
No 252
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.90 E-value=0.00017 Score=79.42 Aligned_cols=104 Identities=9% Similarity=0.074 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC---CHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTY---SVDI 169 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~---s~~l 169 (1167)
+...|+..+..+.. ..+++++|+..|++++..+|++ ..+|+.++.++...|++++|+..|++++..+|. ..+.
T Consensus 141 ~e~~~Y~~A~~l~~-~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQ-DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 45666666654421 1368899999999999999988 478888899999999999999999999988876 4777
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 170 WLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 170 w~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
|+..+..+. ..|+.++|+.+|++++...|..
T Consensus 220 l~klg~~~~-~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 220 MFKVGVIMQ-DKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCC
Confidence 777777776 5789999999999999866653
No 253
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.88 E-value=0.00029 Score=77.58 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 437 GDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
|++++|+..|+.. ++..|++ ..+++.++.++...|++++|+..|++++...|+. +..+.++..++.++.. .|
T Consensus 157 ~~y~~Ai~af~~f-l~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~~dAl~klg~~~~~-~g 231 (263)
T PRK10803 157 SRQDDAIVAFQNF-VKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKAADAMFKVGVIMQD-KG 231 (263)
T ss_pred CCHHHHHHHHHHH-HHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchhHHHHHHHHHHHH-cC
Confidence 4444444444443 3334443 2334444444444555555555555555544431 2334444444444333 55
Q ss_pred CHHHHHHHHHHHHhhcCCCH
Q 001064 514 NAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 514 ~~~~Ar~i~~kal~~~p~~~ 533 (1167)
+.++|+++|+++++.+|++.
T Consensus 232 ~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCH
Confidence 55555555555555555544
No 254
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.043 Score=58.91 Aligned_cols=414 Identities=12% Similarity=0.056 Sum_probs=212.4
Q ss_pred ccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Q 001064 72 ELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDK 151 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~ 151 (1167)
++++ .++..++.-+....+.+|.+..+...|+-.+-.. .++..|..+|+++-..+|.-..|-+-++.-..+.+.+..
T Consensus 20 lI~d-~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 20 LIRD-ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHH-hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 3444 6788889999999999999999999998888774 689999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHH----HHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHH
Q 001064 152 VVEVYERAVQGVTYSVDIWLHYCIF----AINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMI 227 (1167)
Q Consensus 152 A~~l~eraL~~~P~s~~lw~~ya~~----~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~i 227 (1167)
|..+....+. +..|.-.-+++ .. ..+|+..+|.+.+..-. .+ ....-...+-++.+.++++.|.+-
T Consensus 97 ALrV~~~~~D----~~~L~~~~lqLqaAIkY-se~Dl~g~rsLveQlp~---en--~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 97 ALRVAFLLLD----NPALHSRVLQLQAAIKY-SEGDLPGSRSLVEQLPS---EN--EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHHhc-ccccCcchHHHHHhccC---CC--ccchhccchheeeccccHHHHHHH
Confidence 8877655543 23333322222 22 34677778877765432 11 111222223333445788999999
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCC----CccchhhhccccccCCccccccCCcccc
Q 001064 228 YTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP----SETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 228 y~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~----~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
|+.+++....+.-..|+....+-...... .+..+..++.++- .|.... ...++ +| +.-+.++.
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qya------sALk~iSEIieRG~r~HPElgIG-m~teg---iD-vrsvgNt~-- 233 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYA------SALKHISEIIERGIRQHPELGIG-MTTEG---ID-VRSVGNTL-- 233 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHH------HHHHHHHHHHHhhhhcCCccCcc-ceecc---Cc-hhcccchH--
Confidence 99998874443333333322221111110 0101111111110 000000 00000 00 00000100
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
.+.. ..+.........++-..++++.|...+...--|..-. +||- ..++.+.. .-.+++.....-+.=.|..
T Consensus 234 ~lh~-Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~e---lDPv---TLHN~Al~-n~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 VLHQ-SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEE---LDPV---TLHNQALM-NMDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHH-HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccccc---CCch---hhhHHHHh-cccCCccccHHHHHHHHhc
Confidence 0111 1122233444556667777777766554432222111 2222 23333222 1234444333333444555
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII 462 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~ 462 (1167)
+|.-.+-+-++..++.+..-++-|..++.+-....-.- ++-++-.+-.+-...-..++|.+-++.+...+.- .+..
T Consensus 306 nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~---kLRk 382 (459)
T KOG4340|consen 306 NPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE---KLRK 382 (459)
T ss_pred CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---HHHH
Confidence 67666777777666666666677776664321110000 1111111111111233455555544443111000 0111
Q ss_pred HHHHHH-HHcCC----HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 463 KHANME-RRLGN----LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 463 ~~a~~e-~r~g~----~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
.-+.+. .|..+ +..++.-|+.+++.- +| +.+.++++.|. ..++..+.++|++..+.+.++
T Consensus 383 lAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y--------LP-VlMa~AkiyW~-~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 383 LAIQVQEARHNRDDEAIRKAVNEYDETLEKY--------LP-VLMAQAKIYWN-LEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHhhcc-ccccHHHHHHHHHHHhhhccc
Confidence 111111 11111 334555666666654 13 45667888887 888999999999888877554
No 255
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.86 E-value=4.6e-05 Score=65.36 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=47.6
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR 431 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~ 431 (1167)
+.|++++|+.+|++++..+|++.++|+.++.++...|++++|..++++++... |+++.++.+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD-PDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG-TTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCHHHHHHHHhc
Confidence 46777777778888877777777777777777777777777777777777766 555666666554
No 256
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.83 E-value=0.061 Score=59.95 Aligned_cols=292 Identities=16% Similarity=0.089 Sum_probs=183.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYAD--HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRR 189 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~--~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~ 189 (1167)
.|+-..||+.-.+.-++--.+....+.+.+ .-+-.|+++.|++-|+-++. +|.--.+=+.-+-++-...|+.+.|++
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 366677888777776555555555555443 34456899999999998887 465433333322233335788899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
+-+++-...+.- .-.|....+-....|+|+.|.++.+..........+..-
T Consensus 176 yAe~Aa~~Ap~l---~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae-------------------------- 226 (531)
T COG3898 176 YAERAAEKAPQL---PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE-------------------------- 226 (531)
T ss_pred HHHHHHhhccCC---chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH--------------------------
Confidence 999888866653 223444445455568899988877655432111000000
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
..+..+.....+-.-.-+-..++..-.+++| +
T Consensus 227 ----------------------------------------R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--------L 258 (531)
T COG3898 227 ----------------------------------------RSRAVLLTAKAMSLLDADPASARDDALEANK--------L 258 (531)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--------c
Confidence 0000000000000000111222333334444 5
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hhccChHHHH
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHV--FVKRLPEIHL 427 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~--~~p~~~~l~~ 427 (1167)
.|.-.-.-..-...+.+.|+..++-.++|.+-+..|| +++|.-|... +.|+. +..-++|+-++ ..|++.+..+
T Consensus 259 ~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a--r~gdt--a~dRlkRa~~L~slk~nnaes~~ 333 (531)
T COG3898 259 APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA--RSGDT--ALDRLKRAKKLESLKPNNAESSL 333 (531)
T ss_pred CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh--cCCCc--HHHHHHHHHHHHhcCccchHHHH
Confidence 5554444444555666788999999999999999876 8999988753 44543 44555555332 3377888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhh
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL-GNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~-g~~e~A~~~~~kAl~~~ 488 (1167)
..+......|++..|+.--+.+ .+..|. ..+++.+++++.-. |+-.+++..+-+++...
T Consensus 334 ~va~aAlda~e~~~ARa~Aeaa-~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 334 AVAEAALDAGEFSAARAKAEAA-AREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHhccchHHHHHHHHHH-hhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 8888888899999999887776 666774 45778888988776 99999999999999865
No 257
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.82 E-value=1.6e-05 Score=79.99 Aligned_cols=76 Identities=24% Similarity=0.206 Sum_probs=67.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|+-..++++-|.++|-+-|+|..|. +++.+.++.| ||||+|+++-++.-|++. ||..+.++.+.|.+..
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~--ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVG--IPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEe--CCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 48999999999999999999999999998864 5666667777 999999999999999998 8999999998887654
No 258
>PRK15331 chaperone protein SicA; Provisional
Probab=97.81 E-value=0.00022 Score=70.91 Aligned_cols=102 Identities=11% Similarity=-0.040 Sum_probs=91.1
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
..++..+.-+.++-..-. +|++++|.++|.-+...+|.+.+||+.++..+...+++++|+.+|..|..+.++++..-+
T Consensus 32 is~~~le~iY~~Ay~~y~--~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYN--QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred CCHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 445566776766665554 589999999999999999999999999999999999999999999999999989988888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
+-++.++ ..++.+.|+..|+-++.
T Consensus 110 ~agqC~l-~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQL-LMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHH-HhCCHHHHHHHHHHHHh
Confidence 8888888 78999999999999998
No 259
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.81 E-value=0.00042 Score=77.89 Aligned_cols=180 Identities=16% Similarity=0.161 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 001064 307 EAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACA 385 (1167)
Q Consensus 307 ~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~-~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p 385 (1167)
+.+....+.......|+..+++.+|...|.++..- +.+--++. ....|..-+..+.+. ++++|+.+|++|+...-
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~---~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~ 105 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADC---YEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR 105 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH---HHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH
Confidence 33444445555677899999999999999998751 11112222 223455555555444 99999999999998732
Q ss_pred --CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc
Q 001064 386 --NY----PEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTET 453 (1167)
Q Consensus 386 --~~----~~~w~~ya~~l~~~-g~~e~A~~vl~rA~~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~ 453 (1167)
.. ..+...+|.+++.. |+++.|+..|++|++++.... ..++...+.++.+.|++++|..+|+++....
T Consensus 106 ~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred hcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 22 24788999999888 999999999999999885332 3566778999999999999999999974321
Q ss_pred -CCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 454 -SPG-----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 454 -~P~-----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
... .-..++..+.+....|+.-.|...|++....+|.
T Consensus 186 l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 186 LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 111 1234677777888899999999999999988764
No 260
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.80 E-value=0.003 Score=69.10 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--ccChHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE---YWIRYVLCMEASGSMDLAHNALARATHVFV--KRLPEIHLFA 429 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~---~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--p~~~~l~~~~ 429 (1167)
..+..-+.-....|++++|+..|++++...|..+. +.+.++..+.+.+++++|+..+++.++.+| |+.+.++++.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 33444455456789999999999999999998764 346777777889999999999999999994 2344566666
Q ss_pred HHHHHHcC---------------CH---HHHHHHHHHHhhhcCCChHHH-----------------HHHHHHHHHHcCCH
Q 001064 430 ARFKEQNG---------------DI---DGARAAYQLVHTETSPGLLEA-----------------IIKHANMERRLGNL 474 (1167)
Q Consensus 430 a~~~e~~g---------------~~---~~A~~~~~~a~~~~~P~~~~~-----------------~~~~a~~e~r~g~~ 474 (1167)
+......+ |. .+|...|++. ++..|+..-+ -+..+.++.+.|++
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l-i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL-VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH-HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 65432222 22 3566778886 6778875422 14556778899999
Q ss_pred HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 475 EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 525 (1167)
Q Consensus 475 e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ka 525 (1167)
..|+.-++.+++..|+. +..++.+..+...... .|..++|.++....
T Consensus 192 ~AA~~r~~~v~~~Yp~t---~~~~eal~~l~~ay~~-lg~~~~a~~~~~~l 238 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDT---QATRDALPLMENAYRQ-LQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHH-cCChHHHHHHHHHH
Confidence 99999999999998763 3445565555566444 89999998876543
No 261
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.75 E-value=6.6e-05 Score=80.02 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH-HHcCCHHHHHHHHHHHh
Q 001064 372 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK-EQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~-e~~g~~~~A~~~~~~a~ 450 (1167)
+....|.|+....+.++.+|..|+.+..+.+.+.+..++|..+++.+ |.+.++|+..+.++ +..++++.+|.+|.+.
T Consensus 91 k~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g- 168 (435)
T COG5191 91 KKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKG- 168 (435)
T ss_pred eeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhh-
Confidence 56677888888889999999999999999999999999999999999 89999999966665 5689999999999998
Q ss_pred hhcCCChHHHHHHHHHHHH
Q 001064 451 TETSPGLLEAIIKHANMER 469 (1167)
Q Consensus 451 ~~~~P~~~~~~~~~a~~e~ 469 (1167)
++++|+++.+|..|..+|.
T Consensus 169 lR~N~~~p~iw~eyfr~El 187 (435)
T COG5191 169 LRMNSRSPRIWIEYFRMEL 187 (435)
T ss_pred hccCCCCchHHHHHHHHHH
Confidence 8999999999998888764
No 262
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=6.3e-05 Score=86.45 Aligned_cols=73 Identities=23% Similarity=0.355 Sum_probs=64.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
.+|||| +++|+.+|.++|+++|+|.+++| .++. | +-|||||.|.++.+|.+||.. |...+.|++|+|-+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rv-c~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRV-CRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEE-eecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 468998 89999999999999999999875 5555 5 899999999999999999988 78889999999977654
Q ss_pred C
Q 001064 1111 N 1111 (1167)
Q Consensus 1111 ~ 1111 (1167)
.
T Consensus 75 d 75 (369)
T KOG0123|consen 75 D 75 (369)
T ss_pred C
Confidence 3
No 263
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.73 E-value=0.00067 Score=76.08 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=116.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC--CHH
Q 001064 363 FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG--DID 440 (1167)
Q Consensus 363 ~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g--~~~ 440 (1167)
.+...|+++.|+.++.++ .+.+...-.+.++...++.+.|.+.++...+.. .+..-+.+..+-+....| ++.
T Consensus 111 i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID-EDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhCchhHH
Confidence 334568888888777664 556777778888889999999999999987654 444333333343444444 699
Q ss_pred HHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH-HHHH
Q 001064 441 GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA-EKAR 519 (1167)
Q Consensus 441 ~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~-~~Ar 519 (1167)
+|..+|+.+ .+..+..+.++...+.+...+|++++|..++++|+..++ ..+.++.+++-+... .|+. +.+.
T Consensus 185 ~A~y~f~El-~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~------~~~d~LaNliv~~~~-~gk~~~~~~ 256 (290)
T PF04733_consen 185 DAFYIFEEL-SDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP------NDPDTLANLIVCSLH-LGKPTEAAE 256 (290)
T ss_dssp HHHHHHHHH-HCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C------CHHHHHHHHHHHHHH-TT-TCHHHH
T ss_pred HHHHHHHHH-HhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc------CCHHHHHHHHHHHHH-hCCChhHHH
Confidence 999999997 666777889999999999999999999999999998764 347787777776555 7766 7788
Q ss_pred HHHHHHHhhcCCCHHHH
Q 001064 520 QILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 520 ~i~~kal~~~p~~~~l~ 536 (1167)
+++.+....+|+.+-+-
T Consensus 257 ~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 257 RYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHHCHHHTTTSHHHH
T ss_pred HHHHHHHHhCCCChHHH
Confidence 88888888888876443
No 264
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.73 E-value=0.00033 Score=81.10 Aligned_cols=133 Identities=8% Similarity=0.049 Sum_probs=109.5
Q ss_pred CCCHHHHH--HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 94 SSDFSAWT--ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 94 P~d~~aw~--~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
|.....+. .|..++.. .++++.|+.+|+++.+.+|. .+..++.++...++-.+|++++.++|+..|.+.+++.
T Consensus 164 ~t~~~NyLv~~Ll~~l~~--t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~ 238 (395)
T PF09295_consen 164 PTIVNNYLVDTLLKYLSL--TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLN 238 (395)
T ss_pred CCCcchHHHHHHHHHHhh--cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44444333 44555544 36889999999999999986 5777889988889999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENP 235 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p 235 (1167)
..++|++ ..++++.|..+.++++...|.+ ...|..++......++++.|.....-+=..+
T Consensus 239 ~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~---f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 239 LQAEFLL-SKKKYELALEIAKKAVELSPSE---FETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999 6789999999999999977765 6789999999999999999988887654443
No 265
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.71 E-value=0.0051 Score=61.57 Aligned_cols=145 Identities=17% Similarity=0.122 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQL 448 (1167)
Q Consensus 369 ~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 448 (1167)
|+++...-..+.+..-|. ..-.++++..+...|+..+|...|+.++.-.--.++.+.+.++......+++.+|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 444444333344433232 2346677777777888888888888877633356777888888888888888888888888
Q ss_pred HhhhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001064 449 VHTETSPG--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILV 523 (1167)
Q Consensus 449 a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ 523 (1167)
+ .+.+|. .++-.+.++..+..+|++..|+..|+.++...|+ +..-+.|+.|+.. +|+.++|+.-+.
T Consensus 150 l-~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-------~~ar~~Y~e~La~-qgr~~ea~aq~~ 217 (251)
T COG4700 150 L-MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-------PQARIYYAEMLAK-QGRLREANAQYV 217 (251)
T ss_pred H-hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-------HHHHHHHHHHHHH-hcchhHHHHHHH
Confidence 6 555654 3444566677777788888888888888887764 5566778888776 776666654443
No 266
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.71 E-value=0.00043 Score=67.18 Aligned_cols=108 Identities=16% Similarity=0.355 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhccCCC---------HHHHHHHHHHHHh
Q 001064 116 VKIRRVYDAFLAEFP---LCYGYWKKYADHEARV----GSMDKVVEVYERAVQGVTYS---------VDIWLHYCIFAIN 179 (1167)
Q Consensus 116 ~~ar~~ye~~l~~~P---~~~~~W~~~a~~e~~~----~~~e~A~~l~eraL~~~P~s---------~~lw~~ya~~~~~ 179 (1167)
++.|+.|+..|..+. +-...|..|+.+.... +.-.....+++||+..+.++ +.+|+.|+.+.
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~-- 79 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS-- 79 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB--
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc--
Confidence 456788888888877 6679999999998754 45677888999999877543 67788877752
Q ss_pred hcCCHHHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001064 180 TYGDPETIRRLFERGLA-YVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 232 (1167)
Q Consensus 180 ~~~~~~~Ar~~feral~-~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l 232 (1167)
+.++.+|..+.. .+|.. ...+|..|+.++...+++++|..||+++|
T Consensus 80 -----~~~~~if~~l~~~~IG~~--~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 -----SDPREIFKFLYSKGIGTK--LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----SHHHHHHHHHHHHTTSTT--BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----cCHHHHHHHHHHcCccHH--HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 278899998886 35654 67999999999999999999999999875
No 267
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.70 E-value=0.29 Score=60.35 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 192 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fe 192 (1167)
+++.+|.+-.+++++.+|+...+-..-+-...++|..++|..+++ ++..-+.+.++-+..+++.....+..++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 678899999999999999988777777888889999999996555 4444444456667777766667889999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001064 193 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 229 (1167)
Q Consensus 193 ral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~ 229 (1167)
|++...|..-....+++.|++-..=..+-..+.++|.
T Consensus 102 ~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 102 RANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999777633344566666663332233344566665
No 268
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.69 E-value=0.0019 Score=68.72 Aligned_cols=157 Identities=13% Similarity=0.091 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh---HHHHHHH
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP---EIHLFAA 430 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~---~l~~~~a 430 (1167)
+...+.-....|++.+|+..|++++...|.. +++++.++..+...|+++.|+..+++.+..+ |+++ .+++..+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHH
Confidence 4444555568899999999999999987754 4688888888889999999999999999999 5443 4555555
Q ss_pred HHHHH-----------cCCHHHHHHHHHHHhhhcCCChHHH-----------------HHHHHHHHHHcCCHHHHHHHHH
Q 001064 431 RFKEQ-----------NGDIDGARAAYQLVHTETSPGLLEA-----------------IIKHANMERRLGNLEDAFSLYE 482 (1167)
Q Consensus 431 ~~~e~-----------~g~~~~A~~~~~~a~~~~~P~~~~~-----------------~~~~a~~e~r~g~~e~A~~~~~ 482 (1167)
..... .+...+|+..|+.. ++..|++.-+ -+..+.++.+.|++..|..-|+
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l-i~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEEL-IKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHH-HHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHH-HHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44322 22345678888886 6678875422 1556778889999999999999
Q ss_pred HHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHH
Q 001064 483 QAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKAR 519 (1167)
Q Consensus 483 kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar 519 (1167)
.+|+..|+. ......+..++...++ .|..+.|.
T Consensus 166 ~v~~~yp~t---~~~~~al~~l~~~y~~-l~~~~~a~ 198 (203)
T PF13525_consen 166 YVIENYPDT---PAAEEALARLAEAYYK-LGLKQAAD 198 (203)
T ss_dssp HHHHHSTTS---HHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHCCCC---chHHHHHHHHHHHHHH-hCChHHHH
Confidence 999999763 3334455555555444 77666544
No 269
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.69 E-value=3.3e-05 Score=85.46 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=69.5
Q ss_pred ccEEE-EecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1031 VKSVY-VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~-V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++| |+|+++.+++++|+.+|..+|.|..+++ ..+..+|.++|||||+|.+......++......+.++.+.|++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~-~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRL-PTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeecc-CCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 35555 9999999999999999999999999775 335678999999999999999988888766778889999999887
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
+++
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 653
No 270
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.68 E-value=0.0039 Score=62.37 Aligned_cols=133 Identities=21% Similarity=0.264 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-cChHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK-RLPEIHLFAAR 431 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~-~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p-~~~~l~~~~a~ 431 (1167)
..+-..++.-+.+.|++.+|+..|++++.. ..+++.+.+.+++.....++..+|...+++..+.++. ..|.-++.+++
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 455666777777899999999999999986 6788889999999999999999999999999987732 47889999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
.+...|++..|+..|+.+ +...|+ +...+.|+.++.++|+.+++..-|....+..
T Consensus 169 ~laa~g~~a~Aesafe~a-~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 169 TLAAQGKYADAESAFEVA-ISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHhcCCchhHHHHHHHH-HHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 999999999999999998 676775 6778889999999999888887766555443
No 271
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.68 E-value=0.00017 Score=62.73 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH 172 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ 172 (1167)
.+++++|++++++++..+|++...|..++.++.+.|++++|.+.|+++|+..|++.+.-..
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3688888888888888888888888888888888888888888888888888877665443
No 272
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.67 E-value=0.00026 Score=80.12 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=63.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
..|-+++||+.||++||.+||+-.-.|.. .|.+.....+++.|=|||.|++.+.++.||..+...|+.|-|.|..+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~-gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPD-GILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCccccc-ceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 67789999999999999999997754444 45444555677889999999999999999999888899888888643
No 273
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.67 E-value=0.00012 Score=85.45 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=71.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecC--CCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR--KDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++..+.+||+||++.++++.|-..|+.||+|.+|+|+.... ...+.+.||||-|-+..++++|++. +|+.+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678999999999999999999999999999998865322 2345678999999999999999987 79999999999
Q ss_pred EEeccC
Q 001064 1105 IEERRP 1110 (1167)
Q Consensus 1105 V~~~r~ 1110 (1167)
+-+.+.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 988753
No 274
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.66 E-value=0.057 Score=56.86 Aligned_cols=202 Identities=18% Similarity=0.129 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHH-
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLI--ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAAR- 431 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~--~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~- 431 (1167)
.........+...+++..+...+..++. ..+.....+...+.+....+++..+...+..++... +.....+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD-PDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-CCcchHHHHHHHH
Confidence 4455666666788899999999999997 567778899999999988999999999999998865 444445555555
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSP---GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P---~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
++...|+++.|...|+++ +...| .....+..........++++.++..+.+++...+.. ....+..++..+
T Consensus 139 ~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 212 (291)
T COG0457 139 ALYELGDYEEALELYEKA-LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLY 212 (291)
T ss_pred HHHHcCCHHHHHHHHHHH-HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHH
Confidence 788999999999999998 55777 355556666666677899999999999999988531 134556666665
Q ss_pred HHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 509 HLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 509 ~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
.. .++++.|...+.+++...|.....+..........+. .+.+...+.+++...+
T Consensus 213 ~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 213 LK-LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR---YEEALEALEKALELDP 267 (291)
T ss_pred HH-cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC---HHHHHHHHHHHHHhCc
Confidence 54 7889999999999999999844333322222222222 4556777777776654
No 275
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.66 E-value=0.001 Score=63.76 Aligned_cols=94 Identities=18% Similarity=0.072 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc---ChHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR---LPEIHLFA 429 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~---~~~l~~~~ 429 (1167)
+++..+..+...|+.++|+.+|++++..-... ...++.++..+...|+.++|..++++++..+ |+ +..+..++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHH
Confidence 45666777788999999999999999863322 4589999999999999999999999999887 66 77888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHh
Q 001064 430 ARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 430 a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
+..+...|+.++|...+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999998887763
No 276
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.65 E-value=0.00012 Score=78.29 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=59.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCC--ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhC-CCeeeCcEeEE
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGR--IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQAS-PIQLAGRQVYI 1105 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~-~~~i~g~~l~V 1105 (1167)
...+|||||-|.+|++||.+.+...|- +.+++ ++.++..|++||||.|...+..++++.++.. ...|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmK-FFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMK-FFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhh-hhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 478999999999999999888876663 33333 3568889999999999999998888888874 67888887555
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.63 E-value=0.049 Score=63.30 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=99.0
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hhc----
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC----ANYPEYWIRYVLCMEASGSMDLAHNALARATHV-FVK---- 420 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~----p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~-~~p---- 420 (1167)
.......|..++....+.|.++.|...+.++.... ...+.+-+.++.++...|+..+|...++..+.. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 34456789999999999999999999999988753 225788999999999999999999999888871 111
Q ss_pred ----------------------------cChHHHHHHHHHHHHc------CCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001064 421 ----------------------------RLPEIHLFAARFKEQN------GDIDGARAAYQLVHTETSPGLLEAIIKHAN 466 (1167)
Q Consensus 421 ----------------------------~~~~l~~~~a~~~e~~------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 466 (1167)
...++++.++.+.... ++.+++...|..+ ++++|.....|..|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEA-TKLDPSWEKAWHSWAL 300 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH-HHhChhHHHHHHHHHH
Confidence 1235777788888887 8899999999998 7899999999999998
Q ss_pred HHHHc
Q 001064 467 MERRL 471 (1167)
Q Consensus 467 ~e~r~ 471 (1167)
+..+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 87654
No 278
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.63 E-value=0.0015 Score=69.48 Aligned_cols=157 Identities=18% Similarity=0.130 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH---HH
Q 001064 387 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVK--RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE---AI 461 (1167)
Q Consensus 387 ~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p--~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~---~~ 461 (1167)
.++.++..|..+...|++++|+..|++++..+|. ..+.+.+..+..+...|+++.|+..|++. ++..|++.. ++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f-i~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF-IKLYPNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH-HHH-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCCcchhhHH
Confidence 3567778888888899999999999999998842 34578888899999999999999999997 677888653 34
Q ss_pred HHHHHHH-----------HHcCCHHHHHHHHHHHHHhhhCCCccCc----hHHHH-------HHHHHHHHHHhCCHHHHH
Q 001064 462 IKHANME-----------RRLGNLEDAFSLYEQAIAIEKGKEHSQT----LPMLY-------AQYSRFLHLVSRNAEKAR 519 (1167)
Q Consensus 462 ~~~a~~e-----------~r~g~~e~A~~~~~kAl~~~~~~~~~~~----~~~l~-------~~~a~~~~~~~g~~~~Ar 519 (1167)
+..+... ...+...+|+..|+..+...|+...... +..+. ...++|.++ .|.+..|.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-~~~y~aA~ 161 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK-RGKYKAAI 161 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TT-HHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHH
Confidence 4333332 2234467899999999999986432211 01121 334777666 89999999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 520 QILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 520 ~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.-|+..++..|++...-+.+..+...
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 99999999999998766655555433
No 279
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.62 E-value=0.00054 Score=66.51 Aligned_cols=92 Identities=24% Similarity=0.383 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 352 TELENWHNYLDFIERD----GDFNKVVKLYERCLIACANYP---------EYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~----g~~~~a~~~yeral~~~p~~~---------~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+.++.|..|+.|.++. +.......+++||+..+..++ .+|+.||.+.. .+..+|.-.....
T Consensus 20 DPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~~ 93 (126)
T PF08311_consen 20 DPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSKG 93 (126)
T ss_dssp -CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcC
Confidence 4588999999999765 456778899999999865432 48888887432 5666666554411
Q ss_pred -hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 419 -VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 419 -~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
-.+.+.+|..||.+++..|++++|.++|++.
T Consensus 94 IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 94 IGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp TSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 1456777777888888888888887777764
No 280
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.61 E-value=0.12 Score=61.32 Aligned_cols=196 Identities=17% Similarity=0.246 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
...|...++|+.|.+.|.++ +....-|+.|-+.|+++.|.++-++|... -....+++.-+.-+
T Consensus 772 adhyan~~dfe~ae~lf~e~----------------~~~~dai~my~k~~kw~da~kla~e~~~~-e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEA----------------DLFKDAIDMYGKAGKWEDAFKLAEECHGP-EATISLYIAKAEDL 834 (1636)
T ss_pred HHHhccchhHHHHHHHHHhc----------------chhHHHHHHHhccccHHHHHHHHHHhcCc-hhHHHHHHHhHHhH
Confidence 44566667777766666543 34556677777888888888888877644 22234667777777
Q ss_pred HHcCCHHHHHHHH------HHHHHhhh----------------c-cChHHHHHHHHHHHHcCCHHHHHHHHHHHh-----
Q 001064 399 EASGSMDLAHNAL------ARATHVFV----------------K-RLPEIHLFAARFKEQNGDIDGARAAYQLVH----- 450 (1167)
Q Consensus 399 ~~~g~~e~A~~vl------~rA~~~~~----------------p-~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~----- 450 (1167)
+.+|++.+|..+| .+||+.+. + ...+.+..++.-++..|++.+|...|-++.
T Consensus 835 dehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaa 914 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAA 914 (1636)
T ss_pred HhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHH
Confidence 7777776655443 22232221 1 122445556666777788877766554320
Q ss_pred ------hhcCC-----------ChHH--HHHHHH---------HHHHHcCCHHHHHHH------HHHHHHhhhCCCccCc
Q 001064 451 ------TETSP-----------GLLE--AIIKHA---------NMERRLGNLEDAFSL------YEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 451 ------~~~~P-----------~~~~--~~~~~a---------~~e~r~g~~e~A~~~------~~kAl~~~~~~~~~~~ 496 (1167)
.++.. .+.. +.+.|+ .++.++|-++.++.. |+-|+.+..-.. ...
T Consensus 915 vnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~-k~k 993 (1636)
T KOG3616|consen 915 VNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA-KDK 993 (1636)
T ss_pred HHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh-hcc
Confidence 00000 0110 111111 233333433333321 222222211000 012
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
.+++++.|+.|+.. .|++++|-+-|-.|++++.-+.
T Consensus 994 ~~~vhlk~a~~led-egk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 994 MGEVHLKLAMFLED-EGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred CccchhHHhhhhhh-ccchhhhhHhhHHHhhcccccc
Confidence 35688899999887 9999999999999999775543
No 281
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.58 E-value=0.0023 Score=61.40 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC---CHHHHH
Q 001064 98 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---YGYWKKYADHEARVGSMDKVVEVYERAVQGVTY---SVDIWL 171 (1167)
Q Consensus 98 ~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~---s~~lw~ 171 (1167)
.+++.++..+..+ |+.++|..+|+++++.-... .+.++.++..+...|++++|..++++++..+|. +..++.
T Consensus 2 ~~~~~~A~a~d~~--G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSL--GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 3567777777764 78889999999999875444 578888899999999999999999999988887 788888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
.++-.+. ..|+.++|...+-.++.
T Consensus 80 f~Al~L~-~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALY-NLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHH
Confidence 8877666 67888888888877775
No 282
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.57 E-value=0.00013 Score=56.50 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
..|..++..+...|++++|+++|+++|+.+|++.++|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 568888888888888888888888888888888888887764
No 283
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.55 E-value=0.016 Score=61.17 Aligned_cols=196 Identities=18% Similarity=0.159 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH-HHH
Q 001064 321 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL-CME 399 (1167)
Q Consensus 321 ~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~-~l~ 399 (1167)
.+...+.+..++..+...+.. ...+.....|...+.+....+++..++..+.+++...+.....+..... ++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 68 ALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 445555666666666666531 1234445678888888888889999999999999987776555555555 677
Q ss_pred HcCCHHHHHHHHHHHHHhhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHHHHcCCHH
Q 001064 400 ASGSMDLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANMERRLGNLE 475 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e~r~g~~e 475 (1167)
..|+++.|...|.+++... + ................++++.+...+.++ ....+. ....+...+..+...++++
T Consensus 142 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 142 ELGDYEEALELYEKALELD-PELNELAEALLALGALLEALGRYEEALELLEKA-LKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HcCCHHHHHHHHHHHHhcC-CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH-HhhCcccchHHHHHhhHHHHHcccHH
Confidence 8999999999999998743 4 34455555556667789999999999998 677887 6888888999999999999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 001064 476 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 476 ~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
.+...+.+++...+. ....+...+..+. ..+.++++...+.++++..|.
T Consensus 220 ~a~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPD------NAEALYNLALLLL-ELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcc------cHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHhCcc
Confidence 999999999998853 1234555555555 478899999999999999987
No 284
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.54 E-value=0.0043 Score=67.88 Aligned_cols=156 Identities=13% Similarity=0.031 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH---H
Q 001064 387 YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI---HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE---A 460 (1167)
Q Consensus 387 ~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l---~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~---~ 460 (1167)
.++.++..+.-+...|++++|+..|++++..+ |..+.. .+.++..+.+.+++++|+..|++. +++.|++.. +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f-i~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF-IRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCcCCCchHHH
Confidence 45667777777778899999999999999988 555443 467788888999999999999997 788888764 4
Q ss_pred HHHHHHHHHHcC---------------C---HHHHHHHHHHHHHhhhCCCccCch----HHH-------HHHHHHHHHHH
Q 001064 461 IIKHANMERRLG---------------N---LEDAFSLYEQAIAIEKGKEHSQTL----PML-------YAQYSRFLHLV 511 (1167)
Q Consensus 461 ~~~~a~~e~r~g---------------~---~e~A~~~~~kAl~~~~~~~~~~~~----~~l-------~~~~a~~~~~~ 511 (1167)
++..+.....++ | ..+|+..|++.+...|+..-.+.- ..+ -...++|.++
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~- 187 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK- 187 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 555554432222 1 356789999999999864321110 011 1344777666
Q ss_pred hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 512 SRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 512 ~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.|.+..|..-|+..++..|+++..-+.+..+...
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a 221 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA 221 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 8999999999999999999998766666555443
No 285
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.49 E-value=0.00028 Score=79.90 Aligned_cols=75 Identities=25% Similarity=0.266 Sum_probs=64.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
...-|-+++|||++|+++|.++|+.|+ |.++ +..+.+|+..|-|||+|.+.+++++|++.+...++.|-|.|-.+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~---~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENL---EIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEE---EEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 457788899999999999999999996 6653 33566789999999999999999999999888888888988654
No 286
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.47 E-value=0.00034 Score=77.53 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=53.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeee----cCCCccc--------ccEEEEEECCHHHHHHHHHhC
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVR----NRKDVVG--------VCYAFVEFEDISGVQNAIQAS 1094 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~~~g~~--------kg~afV~F~~~~~a~~Al~~~ 1094 (1167)
+-++++|.+-|||.+-.-+.|.++|+.||.|+.|+|.-. ....|.. +-||||+|+..+.|.+|.+.+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 347899999999999999999999999999999876221 1112222 458999999999999998874
No 287
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.46 E-value=0.00054 Score=59.58 Aligned_cols=66 Identities=23% Similarity=0.397 Sum_probs=44.9
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHH
Q 001064 364 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 430 (1167)
Q Consensus 364 ~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a 430 (1167)
+.+.+++++|+.++++++..+|.++.+|..+|.++...|++++|+..|+++++.. |+.+......+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~~a 70 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS-PDDPDARALRA 70 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC-CCcHHHHHHHH
Confidence 3456677777777777777777777777777777777777777777777777665 55555544433
No 288
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.46 E-value=0.0077 Score=61.73 Aligned_cols=214 Identities=14% Similarity=0.143 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHH
Q 001064 312 EKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYW 391 (1167)
Q Consensus 312 ~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w 391 (1167)
..++-.|+.+|...+-..-|+..|..++. +.|+..+++..++-++...|+++.|...|.-.++.+|.+.-..
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLa--------i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALA--------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhh--------cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence 34555567778888888888888988887 7888788877777888888999999999999999999888777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh--HHHHHHHHHHHHcCCHHHHHHHHH-HHhhhcCCChHHHHHHHHHHH
Q 001064 392 IRYVLCMEASGSMDLAHNALARATHVFVKRLP--EIHLFAARFKEQNGDIDGARAAYQ-LVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 392 ~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~--~l~~~~a~~~e~~g~~~~A~~~~~-~a~~~~~P~~~~~~~~~a~~e 468 (1167)
.+-+..+.--|++.-|..-+..--+.. |++| .+|+. +-++.-+..+|+.-+. |+ ..++ -+-| .|....
T Consensus 137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLY---l~E~k~dP~~A~tnL~qR~-~~~d---~e~W-G~~iV~ 207 (297)
T COG4785 137 LNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLY---LNEQKLDPKQAKTNLKQRA-EKSD---KEQW-GWNIVE 207 (297)
T ss_pred hccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHH---HHHhhCCHHHHHHHHHHHH-Hhcc---Hhhh-hHHHHH
Confidence 776665555678887776665555443 4444 34443 4456667777776544 43 3322 2233 222233
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCc-cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 469 RRLGNLEDAFSLYEQAIAIEKGKEH-SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~~~~~~-~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.-+|++.+ ..+++++.+...++.. ...+-+.|..++.... ..|++++|..+|+-|+..+-.+-.-+ .|+.||+.
T Consensus 208 ~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l-~~G~~~~A~~LfKLaiannVynfVE~-RyA~~EL~ 282 (297)
T COG4785 208 FYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYL-SLGDLDEATALFKLAVANNVYNFVEH-RYALLELS 282 (297)
T ss_pred HHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHH
Confidence 33555432 4456666554432211 1122334566666644 49999999999999986543222212 56666654
No 289
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.00015 Score=83.40 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=61.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
..++|+|-|||..|+.++|+.+|+.||+|+.|+. +-..+|..||+|-|..+|+.|+++ ++..|.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~------t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE------TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc------ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4589999999999999999999999999998542 234578999999999999999988 89999999888
No 290
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0019 Score=72.59 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANY--------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~--------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+++-..|......|++|+.+++.+-...+.. ...+++++.++.+.+.+.+|+....+++.+. |++....+.
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyR 296 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYR 296 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHH
Confidence 3333444444445555555555433222211 1267888888999999999999999999977 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhh
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL-EDAFSLYEQAIAIEK 489 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~-e~A~~~~~kAl~~~~ 489 (1167)
.++.+...|+++.|+..|+++ +++.|+|-.+...++.+-.+...+ ++.+++|.+.+....
T Consensus 297 rG~A~l~~~e~~~A~~df~ka-~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 297 RGQALLALGEYDLARDDFQKA-LKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHhhccHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999998 899999988877777665555443 445777887777654
No 291
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.43 E-value=0.18 Score=56.45 Aligned_cols=247 Identities=17% Similarity=0.073 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCCChh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 402 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pld~~--~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g 402 (1167)
.++++.++..||-.+. ||. .+.+--.|+.- .+.|+.+-++..-+++-..-|+-+-.|.....-....|
T Consensus 133 eG~~~~Ar~kfeAMl~---------dPEtRllGLRgLyleA-qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 133 EGDYEDARKKFEAMLD---------DPETRLLGLRGLYLEA-QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAG 202 (531)
T ss_pred cCchHHHHHHHHHHhc---------ChHHHHHhHHHHHHHH-HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC
Confidence 4677778888887764 222 12222233333 46688888888888888877777777777776666778
Q ss_pred CHHHHHHHHHHHHHhh--hcc---ChHHHHHHHHHH-HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001064 403 SMDLAHNALARATHVF--VKR---LPEIHLFAARFK-EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 476 (1167)
Q Consensus 403 ~~e~A~~vl~rA~~~~--~p~---~~~l~~~~a~~~-e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 476 (1167)
+.+.|+++++...... .++ ....-++-+... ...-+...|+..-..+ +++.|+..-.-+.-+..+.+.|++.+
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a-~KL~pdlvPaav~AAralf~d~~~rK 281 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA-NKLAPDLVPAAVVAARALFRDGNLRK 281 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-hhcCCccchHHHHHHHHHHhccchhh
Confidence 8888887776554422 121 111222222222 2234566677666666 67788877776667777777888888
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHH
Q 001064 477 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI-LVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFL 555 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i-~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~a 555 (1167)
+-.+++.+.+.+|. |.|+..|.+. + .|+.-..|-- .++.-.+.|++..-....+.--+..++ ...+
T Consensus 282 g~~ilE~aWK~ePH-------P~ia~lY~~a--r-~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e---~~~A 348 (531)
T COG3898 282 GSKILETAWKAEPH-------PDIALLYVRA--R-SGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE---FSAA 348 (531)
T ss_pred hhhHHHHHHhcCCC-------hHHHHHHHHh--c-CCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc---hHHH
Confidence 88888888887753 5666655443 2 4543332211 122223456666544444333333332 2334
Q ss_pred HHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHH
Q 001064 556 EQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLF-GDAQLIKKAEDRH 605 (1167)
Q Consensus 556 r~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~-Gd~~~~~~v~~r~ 605 (1167)
|.--|.+....+ ++.++....+.|+-. ||...++....+.
T Consensus 349 Ra~Aeaa~r~~p----------res~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 349 RAKAEAAAREAP----------RESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhhhCc----------hhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 444343333222 334666666666555 7777666555443
No 292
>PRK15331 chaperone protein SicA; Provisional
Probab=97.41 E-value=0.0031 Score=62.88 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=90.6
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+....++.-..++--.-..|+++.|..+|.-....++.+++.|+.+|.++...+.++.|+..|..|..+. +++|...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccch
Confidence 4555566666666555678999999999999999999999999999999999999999999999998866 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
.+.++...|+.+.|+..|+.+ ++ .|.+..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a-~~-~~~~~~ 139 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELV-NE-RTEDES 139 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHH-Hh-CcchHH
Confidence 999999999999999999987 44 555443
No 293
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.31 Score=65.99 Aligned_cols=211 Identities=13% Similarity=0.182 Sum_probs=131.1
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc--------
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-------- 421 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-------- 421 (1167)
+..-.+.|..++.+..+.|.+++|....-.|.... -+++.+..|.++...|+...|+.+++..++.+.++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 44446789999999999999999998888888774 67899999999999999999999999999766544
Q ss_pred --------ChHHHHHHHHHHHHcCCHH--HHHHHHHHHhhhcCCChHHHHHHHH----HHH--------HHcCCHHH---
Q 001064 422 --------LPEIHLFAARFKEQNGDID--GARAAYQLVHTETSPGLLEAIIKHA----NME--------RRLGNLED--- 476 (1167)
Q Consensus 422 --------~~~l~~~~a~~~e~~g~~~--~A~~~~~~a~~~~~P~~~~~~~~~a----~~e--------~r~g~~e~--- 476 (1167)
.....+..+.+.+..++++ ..++.|..+ .++.|...+-++..+ .++ ++.|++..
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~-~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~ 1822 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDA-KAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK 1822 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHH-HHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH
Confidence 1234555667777777743 356777777 677774332222222 221 23345555
Q ss_pred HHHHHHHHHHhhhCCC--ccCchHHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 477 AFSLYEQAIAIEKGKE--HSQTLPMLYAQYSRFLHL---------VSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~--~~~~~~~l~~~~a~~~~~---------~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
+.-.|.+++....... ..|.+-.+|..++...+. ..++.+.--+..+.++++.|. ..++-.|..+..+
T Consensus 1823 ~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~-Y~f~ta~sQLlSR 1901 (2382)
T KOG0890|consen 1823 AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPT-YQFYTAYSQLLSR 1901 (2382)
T ss_pred HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHH
Confidence 3444457776543211 122233456554222111 123445555666777777774 3455688888776
Q ss_pred CCChh-H-HHHHHHHHHHHhh
Q 001064 546 QSSPK-Q-IDFLEQLVDKFLM 564 (1167)
Q Consensus 546 ~~~~~-~-~~~ar~l~eral~ 564 (1167)
.-.+. + ...+.++..+.+.
T Consensus 1902 icH~~~dV~~vl~~II~~l~~ 1922 (2382)
T KOG0890|consen 1902 ICHPNQDVARVLKHIIAKLVL 1922 (2382)
T ss_pred HcCCchHHHHHHHHHHHHHHH
Confidence 53322 2 2445555544433
No 294
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.3 Score=52.63 Aligned_cols=82 Identities=12% Similarity=-0.115 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 192 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fe 192 (1167)
.+++.+++++....+..|.+-.....++-.+....++..|-.+|++.-..+|.-...-+.+++-+. ..+.+..|.++..
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY-~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY-KACIYADALRVAF 102 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhcccHHHHHHHH
Confidence 478889999999999999888888888888999999999999999999999988888888888777 5677777776655
Q ss_pred HHH
Q 001064 193 RGL 195 (1167)
Q Consensus 193 ral 195 (1167)
...
T Consensus 103 ~~~ 105 (459)
T KOG4340|consen 103 LLL 105 (459)
T ss_pred Hhc
Confidence 443
No 295
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=97.36 E-value=0.00051 Score=67.12 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=72.5
Q ss_pred cchhHhHHHHHHHHhhh-----cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCC-CcceeEeeeeccccCC
Q 001064 718 PAQVGSYFVGQYYQVLQ-----QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN-FTAIEIKTINSLGSWN 791 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~-----~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~-~~~~~i~~~d~q~~~~ 791 (1167)
+.++...||+.||..|+ +....|..||..++.++ |+|+.+.+. ....+++.+.+ .+.++++++||+..++
T Consensus 3 ~tq~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II-~Ng~Pi~~~---~~F~~~w~~~pv~TqH~L~s~D~H~IPG 78 (166)
T PF10429_consen 3 QTQIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKII-WNGTPIAQP---TAFQQTWQQQPVQTQHQLTSFDCHVIPG 78 (166)
T ss_dssp CCCCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEE-ETTEEES-H---HHHHHHHHCCS--EEEEEEEEEEEEETT
T ss_pred cchhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEE-ECCccCCCH---HHHHHHHHhCccceeeeeeeeeeeEeCC
Confidence 56788899999999999 33556888998876555 899987655 34677889999 6789999999999875
Q ss_pred -CceEEEEEEEEEecCccccceeEEEEEEeee
Q 001064 792 -GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 822 (1167)
Q Consensus 792 -~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~ 822 (1167)
|+++|.|+|.|..++. -+-+--|...|...
T Consensus 79 sgt~i~N~n~KVRFDEs-Grdk~G~~a~l~~~ 109 (166)
T PF10429_consen 79 SGTFIINVNCKVRFDES-GRDKLGEDADLPQP 109 (166)
T ss_dssp TTEEEEEEEEEEEEB-S-SB-TTS-B--TTS-
T ss_pred CCeEEEeeeEEEEecCC-CCCCCCCceeeccc
Confidence 4577789999999876 35566677776543
No 296
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.29 E-value=0.00011 Score=84.18 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=74.4
Q ss_pred CCCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1026 LDEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1026 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
..|.+.+++|+--|.-.++..+|.++|+.+|.|.+|.| |.++.++++||.+||+|.|.+++..||..+|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVri-I~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRI-IGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEe-eccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 45667799999999999999999999999999999986 77888999999999999999999999999999999999999
Q ss_pred Ee
Q 001064 1106 EE 1107 (1167)
Q Consensus 1106 ~~ 1107 (1167)
..
T Consensus 253 q~ 254 (549)
T KOG0147|consen 253 QL 254 (549)
T ss_pred cc
Confidence 64
No 297
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.28 E-value=0.27 Score=58.57 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
.+++++|.. |-.-++.-|+....|+.++++....|+.--|..+|
T Consensus 457 ~~df~ra~a-fles~~~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 457 DGDFDRATA-FLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred cCchHHHHH-HHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 367777754 44456778999999999999999988886665555
No 298
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.28 E-value=0.0042 Score=71.56 Aligned_cols=69 Identities=12% Similarity=-0.044 Sum_probs=65.7
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGY---WKKYADHEARVGSMDKVVEVYERAVQG 162 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~---W~~~a~~e~~~~~~e~A~~l~eraL~~ 162 (1167)
.+|.+.++|+.|+..+.++ +++++|...|+++|+++|++..+ |+.++..+..+|++++|+..|+++|..
T Consensus 70 ~dP~~a~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6999999999999999985 89999999999999999999865 999999999999999999999999997
No 299
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.28 E-value=0.03 Score=64.02 Aligned_cols=177 Identities=16% Similarity=0.081 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhhccChHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIA----CANYPEYWIRYVLCMEA---SGSMDLAHNALARATHVFVKRLPEIH 426 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~----~p~~~~~w~~ya~~l~~---~g~~e~A~~vl~rA~~~~~p~~~~l~ 426 (1167)
.++-+.++--+....+++..+.+.+..-.. .+....+-+.||..|.+ .|+.++|+.++..++.......++++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 456667666677888999999999887665 35567789999999988 89999999999997766656788888
Q ss_pred HHHHHHHHH---------cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHhhhCCCc
Q 001064 427 LFAARFKEQ---------NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE----DAFSLYEQAIAIEKGKEH 493 (1167)
Q Consensus 427 ~~~a~~~e~---------~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e----~A~~~~~kAl~~~~~~~~ 493 (1167)
-..++++.. ...+++|...|.++ -+++|+... =++++.++...|... +.+.+--+.-...-.+..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg-Fe~~~~~Y~-GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKG-FEIEPDYYS-GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHH-HcCCccccc-hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 888876632 12478899999998 466765432 244555555555422 222222111111101100
Q ss_pred cCchHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 494 SQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 494 ~~~~~~l~--~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
.......| ..++..... .|++++|...+++++++.|...
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVL-AGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCcch
Confidence 11112234 445555444 8999999999999999876543
No 300
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.0025 Score=64.40 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=56.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPE-----YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDI 439 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~-----~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~ 439 (1167)
-++|++++|..-|.+||..||..+. ++..-|.++.+++..+.|++-..+||++. |.+.......|.++++..++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhH
Confidence 4678888888888898888887654 33444444555555666666666666655 44455555555555555556
Q ss_pred HHHHHHHHHHhhhcCCChH
Q 001064 440 DGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 440 ~~A~~~~~~a~~~~~P~~~ 458 (1167)
++|+.-|.++ ++++|..-
T Consensus 185 eealeDyKki-~E~dPs~~ 202 (271)
T KOG4234|consen 185 EEALEDYKKI-LESDPSRR 202 (271)
T ss_pred HHHHHHHHHH-HHhCcchH
Confidence 6666666655 45555443
No 301
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.22 E-value=0.0035 Score=63.36 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=82.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhccCh----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 395 VLCMEASGSMDLAHNALARATHVFVKRLP----EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 395 a~~l~~~g~~e~A~~vl~rA~~~~~p~~~----~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
+.-+...|++++|..-|.+|+.++++-.. -++...|..+.+++..+.|+.-+.++ ++++|.+..++.+++.++.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa-iel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKA-IELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh-HhcCchhHHHHHHHHHHHHh
Confidence 33455689999999999999999964332 35556788888999999999999998 89999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhC
Q 001064 471 LGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 471 ~g~~e~A~~~~~kAl~~~~~ 490 (1167)
+.++++|+.-|++.++.+|.
T Consensus 181 ~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999874
No 302
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.18 E-value=0.0038 Score=62.80 Aligned_cols=87 Identities=14% Similarity=0.041 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---
Q 001064 80 SGEEDRLWNIVKANSSDFSAWTALLEETEKLA--------QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS--- 148 (1167)
Q Consensus 80 ~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~--------~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~--- 148 (1167)
+.+.+.++..+..||.|.++++..+..+..+. ..-+++|+.-|+.+|.++|+..++...++..+..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 45677777888888888888886666554431 1355677777888888888877777777776654431
Q ss_pred --------HHHHHHHHHHHHhccCCC
Q 001064 149 --------MDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 149 --------~e~A~~l~eraL~~~P~s 166 (1167)
|++|.+.|++|+...|.+
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444555555555555544
No 303
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=97.13 E-value=0.0042 Score=59.44 Aligned_cols=113 Identities=23% Similarity=0.266 Sum_probs=82.1
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCC-cccchhchHHHHHHHhcCCC---ccee-EeeeeccccCC-CceE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGD-STESASSMLDIHSLVISLNF---TAIE-IKTINSLGSWN-GGVL 795 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~-~~~~~~~~~~i~~~~~~l~~---~~~~-i~~~d~q~~~~-~~i~ 795 (1167)
..|+.+||..|+ ++++.|..||.+.+.+....+. ......+.++|.+.+..+.. ..++ +.+++++...+ ...+
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 579999999999 7899999999998766543321 01223455567778877763 2333 47888777543 3466
Q ss_pred EEEEEEEEecC--ccccceeEEEEEEeeeCCeEEEEcceEEe
Q 001064 796 VMVSGSVKTKE--FCRRRKFVQTFFLAPQEKGYFVLNDIFHF 835 (1167)
Q Consensus 796 v~v~G~~~~~~--~~~~~~F~q~F~L~~~~~~y~v~nd~fr~ 835 (1167)
+.+.+.+...+ ....+.|.++|.+...+++|.|.+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~i~~~~~~~ 123 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVFAGGQTFVLRPQGGGGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEccCCceeEEEEEEEEEEEEeCCEEEEEEEEEec
Confidence 67778887765 24567899999999999999999999876
No 304
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.12 E-value=0.0011 Score=51.43 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 396 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~ 396 (1167)
+.|..++..+...|++++|+.+|++++..+|+++++|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457777777778888888888888888888888888877764
No 305
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.08 E-value=0.0049 Score=59.13 Aligned_cols=91 Identities=22% Similarity=0.362 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 352 TELENWHNYLDFIERD----GDFNKVVKLYERCLIACA---------NYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~----g~~~~a~~~yeral~~~p---------~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+-++.|..|+.|.+.. +.-.....+++||+...- .+..+|+.|+.+. ++ .+++|.-....-
T Consensus 20 DPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~d---p~~if~~L~~~~ 93 (125)
T smart00777 20 DPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---DE---PRELFQFLYSKG 93 (125)
T ss_pred CChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCC
Confidence 3478899999998753 344567889999998743 2335888888753 23 334443332210
Q ss_pred -hccChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 419 -VKRLPEIHLFAARFKEQNGDIDGARAAYQL 448 (1167)
Q Consensus 419 -~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~ 448 (1167)
-.....+|..||.+++..|++.+|.++|+.
T Consensus 94 IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 94 IGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 024566777777777777777777777753
No 306
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.07 E-value=1.4 Score=54.56 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=134.7
Q ss_pred HhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHH
Q 001064 145 RVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRV 224 (1167)
Q Consensus 145 ~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A 224 (1167)
..+++.+|.....+.|+.+|+..-.-..-+-... +.|+.++|..++|-.-. .+.+ +...-..+..++..+++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~-~~~~--D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYG-LKGT--DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhcc-CCCC--chHHHHHHHHHHHHHhhhhHH
Confidence 4478999999999999999987543333333333 67999999966664333 3333 566677777788889999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccC
Q 001064 225 AMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAG 304 (1167)
Q Consensus 225 ~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~ 304 (1167)
..+|+|++...|. .+-++..|..+...
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~---------------------------------------------------- 123 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVRE---------------------------------------------------- 123 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHH----------------------------------------------------
Confidence 9999999998776 55555555544222
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCC---------hHHHHH
Q 001064 305 LTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD---------FNKVVK 375 (1167)
Q Consensus 305 ~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~---------~~~a~~ 375 (1167)
..|+++. ..+++.|...=+|+|+ .|.-.--....... ..-|..
T Consensus 124 ---------------~~yk~qQ--kaa~~LyK~~pk~~yy-----------fWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 124 ---------------KSYKKQQ--KAALQLYKNFPKRAYY-----------FWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred ---------------HHHHHHH--HHHHHHHHhCCcccch-----------HHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 1121111 1123333332232221 23222111111000 112344
Q ss_pred HHHHHHHhc-C--CCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001064 376 LYERCLIAC-A--NYPEYWIRYVLCMEASGSMDLAHNALAR-ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT 451 (1167)
Q Consensus 376 ~yeral~~~-p--~~~~~w~~ya~~l~~~g~~e~A~~vl~r-A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 451 (1167)
..++.+... + ...++. -|..+++.+|++++|..++.. ..+...+-+..+-....+++...+++.+-..+..++ +
T Consensus 176 m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L-l 253 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL-L 253 (932)
T ss_pred HHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH-H
Confidence 445544443 1 112333 334457778899999998843 333443445555566778888889999988888887 5
Q ss_pred hcCCChHH
Q 001064 452 ETSPGLLE 459 (1167)
Q Consensus 452 ~~~P~~~~ 459 (1167)
...+++..
T Consensus 254 ~k~~Ddy~ 261 (932)
T KOG2053|consen 254 EKGNDDYK 261 (932)
T ss_pred HhCCcchH
Confidence 66777633
No 307
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.17 Score=54.14 Aligned_cols=184 Identities=15% Similarity=0.111 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhcCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHH
Q 001064 352 TELENWHNYLDFIERDGDFN-KVVKLYERCLIACANYPEYWIRYV-LCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 429 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~g~~~-~a~~~yeral~~~p~~~~~w~~ya-~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~ 429 (1167)
..+...+.+..+++..++.+ ..-.++|..+........+|.-.+ .++...+++++|.+.+.+.. ..++..+-
T Consensus 70 ~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~ 143 (299)
T KOG3081|consen 70 TPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALN 143 (299)
T ss_pred ChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHH
Confidence 34566777777766555444 345567776666555555666554 56667899999998887733 23456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001064 430 ARFKEQNGDIDGARAAYQLVHTETSPGLLE--AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 507 (1167)
Q Consensus 430 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~--~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~ 507 (1167)
..++.+..+++-|++.+++. .+++-+..- +-..|+.+.-.-+.+..|.-+|+...+..+. .|.+....+-+
T Consensus 144 VqI~lk~~r~d~A~~~lk~m-q~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~------T~~llnG~Av~ 216 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKM-QQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP------TPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC------ChHHHccHHHH
Confidence 67777888889999998887 555544221 1122333333345688999999988774432 26677777766
Q ss_pred HHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh
Q 001064 508 LHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 508 ~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~ 549 (1167)
... .|++++|..+++.||..+++++..+.+++-.-...|.+
T Consensus 217 ~l~-~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 217 HLQ-LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHH-hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 554 99999999999999999999999988888777766654
No 308
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.01 E-value=0.0036 Score=72.13 Aligned_cols=71 Identities=17% Similarity=0.112 Sum_probs=66.1
Q ss_pred CCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 348 PLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY---WIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 348 pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~---w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+.+|+....|.+++..+...|++++|+.+|+++|..+|++.+. |++.+.+|..+|+.++|+..|++|+++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3578889999999999999999999999999999999999965 9999999999999999999999999863
No 309
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.00 E-value=0.0043 Score=56.51 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=59.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHhc--CCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee----CcEeE
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQN--FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA----GRQVY 1104 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~----g~~l~ 1104 (1167)
++|.|+|||...|.++|.+++.. .|..-.+-+.+ |-.++.+.|||||.|.+++.+.+-.+. +|..+. .+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPi-Df~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPI-DFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeee-eccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 68999999999999999998864 34544443333 556778899999999999999988877 676664 34567
Q ss_pred EEeccC
Q 001064 1105 IEERRP 1110 (1167)
Q Consensus 1105 V~~~r~ 1110 (1167)
|.+++-
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 777664
No 310
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0078 Score=64.85 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=70.6
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 509 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~---~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~ 509 (1167)
+.+.|++.+|...|..- +...|+.. .+++=+++....+|++++|..+|..+++..|. ++.-|+.+++++..+.
T Consensus 151 ~~ksgdy~~A~~~F~~f-i~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~---s~KApdallKlg~~~~ 226 (262)
T COG1729 151 LYKSGDYAEAEQAFQAF-IKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK---SPKAPDALLKLGVSLG 226 (262)
T ss_pred HHHcCCHHHHHHHHHHH-HHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC---CCCChHHHHHHHHHHH
Confidence 34667788888777774 56666643 22333445566788888888888888887764 3555778888888877
Q ss_pred HHhCCHHHHHHHHHHHHhhcCCCHHHH
Q 001064 510 LVSRNAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 510 ~~~g~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
+ +|+.++|+.+|++.++.+|+...-.
T Consensus 227 ~-l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 227 R-LGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred H-hcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 6 8888888888888888888776443
No 311
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.98 E-value=0.0094 Score=56.15 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=48.5
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
+.+.|+++.|++.|.++ +.+.|..+.+|..++..++-+|+-++|..-+++|+++..++ ..+.-..+.+-+-++ +..
T Consensus 53 laE~g~Ld~AlE~F~qa-l~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacqa~vQRg~ly-Rl~ 128 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQA-LCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQAFVQRGLLY-RLL 128 (175)
T ss_pred HHhccchHHHHHHHHHH-HHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHH-HHh
Confidence 33455555666666555 45555555666666655555566666666666666554322 111223344444442 235
Q ss_pred CCHHHHHHHHHHHHhh
Q 001064 513 RNAEKARQILVDSLDH 528 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~~ 528 (1167)
|+.+.||.-|+.|-++
T Consensus 129 g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQL 144 (175)
T ss_pred CchHHHHHhHHHHHHh
Confidence 6666666666655443
No 312
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.98 E-value=0.022 Score=65.85 Aligned_cols=167 Identities=12% Similarity=0.037 Sum_probs=113.8
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc---------c---------------
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---------R--------------- 421 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p---------~--------------- 421 (1167)
+..+..+-+++-.+||..+|+..++|+-++. +......++..+|++|++.-.. .
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 3456778888999999999999999988774 3345577888888888764320 0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001064 422 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 499 (1167)
Q Consensus 422 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~ 499 (1167)
..-+...+|....+.|+.++|.+.|..+ ++.+|. +..+...++..+..++.+.++..++.+.=++. -+....
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdL-lke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-----lpkSAt 331 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDL-LKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-----LPKSAT 331 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHH-HhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-----CCchHH
Confidence 1223334688889999999999999998 444454 56688888888899999999999998853221 111122
Q ss_pred HHHHHHHHHHHHhCC---------------HHHHHHHHHHHHhhcCCCHHHHHHHH
Q 001064 500 LYAQYSRFLHLVSRN---------------AEKARQILVDSLDHVQLSKPLLEALI 540 (1167)
Q Consensus 500 l~~~~a~~~~~~~g~---------------~~~Ar~i~~kal~~~p~~~~l~~~~~ 540 (1167)
+...-+-+..+..++ ...|.+.+.+|++.+|+-+.++....
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K 387 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMK 387 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccC
Confidence 211112222222332 13567889999999999887775433
No 313
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.11 Score=55.43 Aligned_cols=200 Identities=16% Similarity=0.085 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHN-ALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~-vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
....++.+++..++.++-.. +++.........+.-.++..+.++...|++++|.++..+. .+.++.-.-+.+.
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~ 147 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQIL 147 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHH
Confidence 45566777766665555443 3444443332233445566788889999999999987663 3566776777888
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCC
Q 001064 469 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSS 548 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~ 548 (1167)
.++.++|-|+..+++..+.+.+ .++-.+...|..+.-- .+.+.+|.-||+..-+..+-.+.+....+-..+.+++
T Consensus 148 lk~~r~d~A~~~lk~mq~ided----~tLtQLA~awv~la~g-gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDED----ATLTQLAQAWVKLATG-GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchH----HHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 8899999999999999888732 1222233334433222 4479999999999999888788888877777777776
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhhhCCC
Q 001064 549 PKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFG-DAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 549 ~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~G-d~~~~~~v~~r~~~~~~~~ 612 (1167)
++.+..+++.+|......+ +.+-..+-.-...| |.+...+....+....|++
T Consensus 223 ---~eeAe~lL~eaL~kd~~dp---------etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 223 ---YEEAESLLEEALDKDAKDP---------ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred ---HHHHHHHHHHHHhccCCCH---------HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 6778999999999876665 46777777777788 7788888887777777765
No 314
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.94 E-value=0.0013 Score=68.51 Aligned_cols=67 Identities=24% Similarity=0.400 Sum_probs=59.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
..+.++|.|++..+.+.+|.++|.++|.+....+ ..+++||+|++.+++..|+.. ++..+.|+.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh---------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3589999999999999999999999999954321 357999999999999999988 799999999999
No 315
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.94 E-value=0.00064 Score=79.22 Aligned_cols=80 Identities=23% Similarity=0.361 Sum_probs=72.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
...+|||++||...++..++++...||.++.... +.+..+|.++||+|.+|.+......|+.. ||..++++.|.|..+
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l-v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL-VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhhee-ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 4589999999999999999999999999998764 77888899999999999999999999988 899999999999766
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
-.
T Consensus 367 ~~ 368 (500)
T KOG0120|consen 367 IV 368 (500)
T ss_pred hc
Confidence 43
No 316
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.17 Score=53.23 Aligned_cols=205 Identities=15% Similarity=0.071 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-------GSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~-------g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
.+.+-.-.+...++++++...++++....-++ ..|+..+..++.. ..+.++..+|++|+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnn-rslfhAAKayEqaamLake~~klsEvvdl~eKAs------------- 98 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENN-RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS------------- 98 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------
Confidence 33333444445567777777777777663333 2344444444322 12223333333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
.++.++|..+-|-..++++. .+ ...-+.++|+.+|.+++......+...--.+++-+.++++
T Consensus 99 --~lY~E~GspdtAAmaleKAa---------------k~-lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 99 --ELYVECGSPDTAAMALEKAA---------------KA-LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred --HHHHHhCCcchHHHHHHHHH---------------HH-hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 33445666666666666652 12 1345678899999999887754322111234666777777
Q ss_pred HHHhCCHHHHHHHHHHHHh------hcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 001064 509 HLVSRNAEKARQILVDSLD------HVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELS 582 (1167)
Q Consensus 509 ~~~~g~~~~Ar~i~~kal~------~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~ 582 (1167)
.+ ..++.+|-..|.+-.. ..+.....+...+.+.+-.++ +..+.++|....+.. ..+.+++. ...
T Consensus 161 Vr-l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D---yv~aekc~r~~~qip----~f~~sed~-r~l 231 (308)
T KOG1585|consen 161 VR-LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD---YVQAEKCYRDCSQIP----AFLKSEDS-RSL 231 (308)
T ss_pred hh-hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH---HHHHHHHhcchhcCc----cccChHHH-HHH
Confidence 76 6678777776665332 123333344444433333222 334566666544332 12333333 345
Q ss_pred HHHHHHHHhhCCHHHHHHHH
Q 001064 583 CVFLEFLGLFGDAQLIKKAE 602 (1167)
Q Consensus 583 ~~~l~fe~~~Gd~~~~~~v~ 602 (1167)
++.+.+. ..||.+.+.+|.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 5555554 348888888776
No 317
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.90 E-value=0.012 Score=55.54 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=61.5
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
-..|+.+.|+..|.++|..||..+.++.+-++.+.-+|+.++|+.-+++|+++.-++-
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t---------------------- 111 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT---------------------- 111 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc----------------------
Confidence 3557777777777777777777777777777777777777777777777776542110
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
-.-+..+.+++.+++.+|+-+.|+.-|+.|-++-
T Consensus 112 ----------rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 112 ----------RTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred ----------hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 0013345666677777777777777777776654
No 318
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.90 E-value=0.0019 Score=60.38 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=42.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---C---CCeeeCcEeE
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---S---PIQLAGRQVY 1104 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~---~~~i~g~~l~ 1104 (1167)
|..|+|.+++..++.++|+++|++||.|..|++.. +-.-|||-|.+.++|+.|++. . +..|.+..+.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-------G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-------GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-------T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-------CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 46789999999999999999999999999876421 223799999999999999865 3 5667777666
Q ss_pred EE
Q 001064 1105 IE 1106 (1167)
Q Consensus 1105 V~ 1106 (1167)
++
T Consensus 74 ~~ 75 (105)
T PF08777_consen 74 LE 75 (105)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 319
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.84 E-value=0.0032 Score=55.51 Aligned_cols=74 Identities=22% Similarity=0.252 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCC-ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 455 PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE-HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 455 P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~-~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
|+...++..++.++.++|++++|+.+|++++.+...-. ..+....++..+|.+... .|++++|+++|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence 34456788889999999999999999999998742111 112234457888888766 999999999999999753
No 320
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.84 E-value=0.0038 Score=67.74 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=74.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001064 395 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 395 a~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
+.-+.++|.+++|+.+|.+++... |.++-++...|..+.+...+.-|..-++.+ +.++-.+..+|.+++..-..+|++
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A-iaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAA-IALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHHHHHHHHHHhhH
Confidence 444556788888888888888876 777788888887777888887777777776 667777778888888888888889
Q ss_pred HHHHHHHHHHHHhhhC
Q 001064 475 EDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 475 e~A~~~~~kAl~~~~~ 490 (1167)
++|.+-++.+|.+.|+
T Consensus 182 ~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhHHHHHhhCcc
Confidence 9999999999988864
No 321
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.84 E-value=0.034 Score=54.40 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhcCCCHH
Q 001064 515 AEKARQILVDSLDHVQLSKP 534 (1167)
Q Consensus 515 ~~~Ar~i~~kal~~~p~~~~ 534 (1167)
...|+.-|++.++.+|++..
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 55677777777777777653
No 322
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.011 Score=61.78 Aligned_cols=101 Identities=11% Similarity=0.066 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 192 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fe 192 (1167)
+.+..|+..|-++|.+.|+...||.+-|..+++.++++.+..-..|+|.++|+.+..-+....+.+ ....+++++..+.
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l-~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL-QSKGYDEAIKVLQ 102 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH-hhccccHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999988 6788999999999
Q ss_pred HHHHhcCCCC--CCHHHHHHHHHH
Q 001064 193 RGLAYVGTDY--LSFPLWDKYIEY 214 (1167)
Q Consensus 193 ral~~~g~d~--~s~~lw~~y~~~ 214 (1167)
||......++ ...+||..+...
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHH
Confidence 9965433222 245778777664
No 323
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.14 Score=53.97 Aligned_cols=194 Identities=13% Similarity=0.035 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHH------HHHHHHcCChHHHHHHHHHHHHhc-----CCC
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY------LDFIERDGDFNKVVKLYERCLIAC-----ANY 387 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y------~~~~e~~g~~~~a~~~yeral~~~-----p~~ 387 (1167)
...|+.+++++++-..+.++++ -..++...|+.- +-+..+...+.++..+|+++.... |..
T Consensus 38 AvafRnAk~feKakdcLlkA~~--------~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASK--------GYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHH--------HHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 4468888899988888888885 222333334332 222234567788999999988752 222
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-----hhcCCC
Q 001064 388 P-EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVH-----TETSPG 456 (1167)
Q Consensus 388 ~-~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~-----~~~~P~ 456 (1167)
. ...-+.+..++ ..+.++|+.+|++++.+.... -.+++-..++++.+..++++|-..+.+-. ....+.
T Consensus 110 AAmaleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 110 AAMALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred HHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 2 24555556554 567899999999999987422 12344445778888888888776666521 233566
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 457 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 525 (1167)
Q Consensus 457 ~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ka 525 (1167)
....++..+.++.-..++..|..+|+...++..-. .........++..+ |. .|+.++..+++...
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~a-yd-~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTA-YD-EGDIEEIKKVLSSP 253 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHH-hc-cCCHHHHHHHHcCh
Confidence 66777877777777789999999999987764311 11223345566555 44 89999988887643
No 324
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.70 E-value=0.0026 Score=45.31 Aligned_cols=32 Identities=34% Similarity=0.794 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 147 GSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 147 ~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
|++++|+.+|+++|...|.+.++|+.|++|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 35667777777777777777777777777654
No 325
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.69 E-value=1.6 Score=50.63 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc---cChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCC----
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK---RLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPG---- 456 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p---~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~---- 456 (1167)
......|+.++.+..+.|.++.|...+.++...... ..+.+.+.++.++...|+..+|...++..+. .+...
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 344578999999999999999999999998875422 2678999999999999999999998887533 11110
Q ss_pred ----------------------------hHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 457 ----------------------------LLEAIIKHANMERRL------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 457 ----------------------------~~~~~~~~a~~e~r~------g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
...+++.++.+.... ++.+++...|+++++..+. ....|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~k~~~ 296 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS------WEKAWH 296 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh------HHHHHH
Confidence 124578888888777 8899999999999999853 244677
Q ss_pred HHHHHHHH
Q 001064 503 QYSRFLHL 510 (1167)
Q Consensus 503 ~~a~~~~~ 510 (1167)
.|+.+...
T Consensus 297 ~~a~~~~~ 304 (352)
T PF02259_consen 297 SWALFNDK 304 (352)
T ss_pred HHHHHHHH
Confidence 77776544
No 326
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.69 E-value=0.27 Score=50.89 Aligned_cols=203 Identities=17% Similarity=0.143 Sum_probs=133.2
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHH
Q 001064 368 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQ 447 (1167)
Q Consensus 368 g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~ 447 (1167)
.+-+||.-+|||.. ++...|-..-|+.-|..++.+. |+-+.++..++.++...|+++.|.++|+
T Consensus 60 ~~eeRA~l~fERGv---------------lYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFd 123 (297)
T COG4785 60 TDEERAQLLFERGV---------------LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFD 123 (297)
T ss_pred ChHHHHHHHHHhcc---------------hhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhh
Confidence 34456666666643 4556677777888889999988 8999999999999999999999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH-HHHH
Q 001064 448 LVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL-VDSL 526 (1167)
Q Consensus 448 ~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~-~kal 526 (1167)
.. .+++|.+--+.+.++....--|++.-|..-+.+..+.+|++ | .-.+|..+... .-+..+|+.-+ +++-
T Consensus 124 s~-~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D---P-fR~LWLYl~E~----k~dP~~A~tnL~qR~~ 194 (297)
T COG4785 124 SV-LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND---P-FRSLWLYLNEQ----KLDPKQAKTNLKQRAE 194 (297)
T ss_pred hH-hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC---h-HHHHHHHHHHh----hCCHHHHHHHHHHHHH
Confidence 98 89999998888887776666789999999988888887643 2 12356544322 34677777644 4443
Q ss_pred hhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHH---HHhhCCHHHHHHHHH
Q 001064 527 DHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEF---LGLFGDAQLIKKAED 603 (1167)
Q Consensus 527 ~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~f---e~~~Gd~~~~~~v~~ 603 (1167)
. .+...|- +...+.-+|... ...+++++..-..++. .-.+.+.+.|-.. ....|+++.+..+.+
T Consensus 195 ~---~d~e~WG-~~iV~~yLgkiS----~e~l~~~~~a~a~~n~-----~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 195 K---SDKEQWG-WNIVEFYLGKIS----EETLMERLKADATDNT-----SLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred h---ccHhhhh-HHHHHHHHhhcc----HHHHHHHHHhhccchH-----HHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3 3445552 222333222211 2456666654333222 1122344444443 344688888888777
Q ss_pred HHHhh
Q 001064 604 RHARL 608 (1167)
Q Consensus 604 r~~~~ 608 (1167)
-....
T Consensus 262 Laian 266 (297)
T COG4785 262 LAVAN 266 (297)
T ss_pred HHHHH
Confidence 66543
No 327
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.67 E-value=0.02 Score=61.80 Aligned_cols=97 Identities=22% Similarity=0.242 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHH
Q 001064 393 RYVLCMEASGSMDLAHNALARATHVFVK--RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANM 467 (1167)
Q Consensus 393 ~ya~~l~~~g~~e~A~~vl~rA~~~~~p--~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~ 467 (1167)
+.|.-+...|++..|...|..-++.+|. ..+..++-++..+...|++++|..+|.++ .+-.|+ .++.+++.+..
T Consensus 146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~-~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARV-VKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHH-HHhCCCCCCChHHHHHHHHH
Confidence 3333344567788888888887777732 24567777777777788888888888876 333444 45678888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhC
Q 001064 468 ERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 468 e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
..++|+.++|+.+|+++++..|+
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCC
Confidence 88888888888888888888775
No 328
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.67 E-value=0.038 Score=54.03 Aligned_cols=72 Identities=13% Similarity=-0.041 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHH
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKP 534 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~ 534 (1167)
..++.-+.-..+.|++++|++.|+......|-.. ..+...+.++...++ .+++++|+..+++.++++|.++.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~---ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE---YAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc---ccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCC
Confidence 3455556666677888888888888777776432 222333444444445 78888888888888888888763
No 329
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.67 E-value=0.009 Score=64.99 Aligned_cols=105 Identities=17% Similarity=0.068 Sum_probs=84.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH
Q 001064 430 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH 509 (1167)
Q Consensus 430 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~ 509 (1167)
+.-+.++|+|++|+.+|.+. +.+.|.++-.+..++..+.++..|..|..-++.|+.++. .+-..|..-+.. .
T Consensus 104 GN~yFKQgKy~EAIDCYs~~-ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KAYSRR~~A-R 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTA-IAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKAYSRRMQA-R 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhh-hccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHHHHHHHHH-H
Confidence 34455899999999999998 789999999999999999999999999999999999874 112233333322 2
Q ss_pred HHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 510 LVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 510 ~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
..+|++++|.+-++.+|.+.|++-.|-..++.+
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 358999999999999999999987776655544
No 330
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.12 Score=53.96 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=78.6
Q ss_pred CChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH
Q 001064 368 GDFNKVVKLYERCLIACANY------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 368 g~~~~a~~~yeral~~~p~~------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~ 441 (1167)
+.+++|..+|.|+-...... -+.+...|.++.+.|+...|...|-.|-..+ +..+..+
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy----------------kk~~~~e 91 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY----------------KKVDPEE 91 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh----------------hccChHH
Confidence 45666777777765442110 1244555555555555544444444443322 2334555
Q ss_pred HHHHHHHHhhhcCCChH------HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC
Q 001064 442 ARAAYQLVHTETSPGLL------EAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN 514 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~~~------~~~~~~a~~e~-r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~ 514 (1167)
|..+++++ +++.-+-. ..++..+++++ .+.++++|+.+|+.|-+...+.+....--.-++..+.+... .+.
T Consensus 92 Av~cL~~a-ieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~-leq 169 (288)
T KOG1586|consen 92 AVNCLEKA-IEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ-LEQ 169 (288)
T ss_pred HHHHHHHH-HHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH-HHH
Confidence 55555544 23222111 11334444443 34788888888888888776543211111234455555444 777
Q ss_pred HHHHHHHHHHHHhhcCCCH
Q 001064 515 AEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 515 ~~~Ar~i~~kal~~~p~~~ 533 (1167)
+.+|..+|++.....-++.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHhccch
Confidence 8999999988777655554
No 331
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.61 E-value=0.014 Score=56.14 Aligned_cols=105 Identities=16% Similarity=0.340 Sum_probs=76.0
Q ss_pred HHHHHHHHHH-HhC--CCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcc---------CCCHHHHHHHHHHHHhh
Q 001064 117 KIRRVYDAFL-AEF--PLCYGYWKKYADHEARV----GSMDKVVEVYERAVQGV---------TYSVDIWLHYCIFAINT 180 (1167)
Q Consensus 117 ~ar~~ye~~l-~~~--P~~~~~W~~~a~~e~~~----~~~e~A~~l~eraL~~~---------P~s~~lw~~ya~~~~~~ 180 (1167)
..|+.|++-| ..+ .+-...|..|+.+.... +.-..-..+++||++.+ |.-+.+|+.|+++.
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~--- 79 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC--- 79 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---
Confidence 3466777766 322 33458999999997642 23456778899998865 23368899998873
Q ss_pred cCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001064 181 YGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 230 (1167)
Q Consensus 181 ~~~~~~Ar~~feral~~-~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r 230 (1167)
++ .+.+|..+... +|.. ...+|..|+.++...|++..|..||++
T Consensus 80 -~d---p~~if~~L~~~~IG~~--~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 -DE---PRELFQFLYSKGIGTK--LALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred -CC---HHHHHHHHHHCCcchh--hHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 23 56778877753 4443 568999999999999999999999975
No 332
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.57 E-value=0.0045 Score=64.98 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=48.4
Q ss_pred HHHHHHHh-cCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1046 FEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1046 ~~l~~~F~-~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++|-..|+ +||+|+.+. |.+.-.-...|-++|.|...++|++|++. |+--|+|++|..++.
T Consensus 83 Ed~f~E~~~kygEiee~~--Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELN--VCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhh--hhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444445 999999853 55555556789999999999999999988 899999999987653
No 333
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.56 E-value=0.0031 Score=76.31 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=16.3
Q ss_pred eEEEEEEEEEecCccccceeEEEEEEeeeCCeE
Q 001064 794 VLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGY 826 (1167)
Q Consensus 794 i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y 826 (1167)
+++.|.|.+++... ..-.|-+-|.|.....+|
T Consensus 873 ~m~~~as~~s~~~~-~~~~~~~~~rl~g~q~~~ 904 (1282)
T KOG0921|consen 873 VMCDVASAMSFPTP-FVPREKHHSRLSGTQRKF 904 (1282)
T ss_pred hhhhhhcccccccc-cccccccccccccchhhc
Confidence 44445555555443 334466666666554333
No 334
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.55 E-value=0.0024 Score=46.23 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=22.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001064 122 YDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 122 ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
|+++|+.+|++..+|..++.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66677777777777777777777777776664
No 335
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.41 E-value=0.0047 Score=62.87 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=49.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1098 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i 1098 (1167)
...+|||.||..++++++|+.+|+.|--....+ ++.+ . +-+.||++|++.+.+..|+.. .|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~--~~~~-~--g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILK--IRAR-G--GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEE--EecC-C--CcceEeecHHHHHHHHHHHHHhhccee
Confidence 467899999999999999999999998776543 4443 2 346899999998888888765 35444
No 336
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.40 E-value=0.36 Score=51.85 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHH---HH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI---HL 427 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~---~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l---~~ 427 (1167)
...|-.-+.-+.+.|++++|...|+.....+|..+ .+.+..+..+-+.++++.|+...+|-+..+ |.++.+ ++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChhHHHH
Confidence 45566667777788888888888888888777554 466666666677888888888888888888 444432 22
Q ss_pred HHHHHHHH-----cCCHHHHHHH---HHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH
Q 001064 428 FAARFKEQ-----NGDIDGARAA---YQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM 499 (1167)
Q Consensus 428 ~~a~~~e~-----~g~~~~A~~~---~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~ 499 (1167)
+.+..... ..|...++.. |+.. +...|++.-+- +-..-+..+...|. .
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~-i~ryPnS~Ya~-----------dA~~~i~~~~d~LA------------~ 168 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKEL-VQRYPNSRYAP-----------DAKARIVKLNDALA------------G 168 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHH-HHHCCCCcchh-----------hHHHHHHHHHHHHH------------H
Confidence 22222111 1122222222 2222 33344432110 00000111111111 1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 500 LYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 500 l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.=...++|..+ .|.+-.|..-++..++..|+.....+++..++..
T Consensus 169 ~Em~IaryY~k-r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ea 213 (254)
T COG4105 169 HEMAIARYYLK-RGAYVAAINRFEEVLENYPDTSAVREALARLEEA 213 (254)
T ss_pred HHHHHHHHHHH-hcChHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 11355677555 8889999999999999999888777777766654
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.34 E-value=0.032 Score=56.35 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 115 IVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG----------SMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 115 ~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~----------~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
++.||+.++.....+|++.+.+.+|+-.+..+. -++.|+.-|+.||.++|+..+...+++..+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 577999999999999999999999988766442 3678999999999999999888888887766
No 338
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.29 E-value=0.026 Score=70.39 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHhcCCCceeee---EeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1040 PSTVTAFEIEEEFQNFGRIKPDG---VFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1040 p~~~t~~~l~~~F~~~G~i~~v~---i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
-..++..+|-.++..-+.|..-. |.+. ..|.||+-.. ..+...+.. ++..+.|+.|.|+..+.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLF-------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEe-------CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 35788888888887766664422 1222 2488999954 456667766 68899999999998753
No 339
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.24 E-value=0.0048 Score=44.71 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 001064 376 LYERCLIACANYPEYWIRYVLCMEASGSMDLAH 408 (1167)
Q Consensus 376 ~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~ 408 (1167)
+|+|||..+|+++++|+.+|.++...|+.++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 377888888888888888888888888888775
No 340
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.23 E-value=0.52 Score=52.32 Aligned_cols=238 Identities=14% Similarity=0.100 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYP-----EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPE 424 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~-----~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~ 424 (1167)
+.+.++..-.++..++.+++.+-.-++..-...+ .....++..+...+.++.+++.|+.|+.+.-.. ...
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3444444444555666677766666665522222 244445666666778899999999998765211 235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC----ChH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc
Q 001064 425 IHLFAARFKEQNGDIDGARAAYQLVHTETSP----GLL------EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 494 (1167)
Q Consensus 425 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P----~~~------~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~ 494 (1167)
++..++.+.-+..|+++|.-...++ .++.- ++. .+.+.++..++.+|.+-.|.++.++|.++.-..-+-
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA-~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKA-AELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhH-HHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 6777888899999999988666665 22211 111 234556667778899988999988888765321111
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHH-hhcCCCCCCCC
Q 001064 495 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKF-LMSNSDSPSTA 573 (1167)
Q Consensus 495 ~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~era-l~~~~~~~~~l 573 (1167)
.....-...+++++ +..|+.+.|..-|+.|.... ..+-+.+..++.-.+ +-++++.. +....-+-
T Consensus 243 a~~arc~~~~aDIy-R~~gd~e~af~rYe~Am~~m---~~~gdrmgqv~al~g-------~Akc~~~~r~~~k~~~C--- 308 (518)
T KOG1941|consen 243 ALQARCLLCFADIY-RSRGDLERAFRRYEQAMGTM---ASLGDRMGQVEALDG-------AAKCLETLRLQNKICNC--- 308 (518)
T ss_pred HHHHHHHHHHHHHH-HhcccHhHHHHHHHHHHHHH---hhhhhhHHHHHHHHH-------HHHHHHHHHHhhccccc---
Confidence 22222346678884 45999999999999887532 233444555544322 22222221 11111111
Q ss_pred CHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhC
Q 001064 574 NAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 610 (1167)
Q Consensus 574 ~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~ 610 (1167)
...++-.+.++.-+..|.--.+.|+.=|+...+.
T Consensus 309 ---rale~n~r~levA~~IG~K~~vlK~hcrla~iYr 342 (518)
T KOG1941|consen 309 ---RALEFNTRLLEVASSIGAKLSVLKLHCRLASIYR 342 (518)
T ss_pred ---chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 2457888999999999999999999999988874
No 341
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.23 E-value=0.0079 Score=64.60 Aligned_cols=78 Identities=24% Similarity=0.343 Sum_probs=60.0
Q ss_pred CccEEEEecCCCCCCHHHH------HHHHhcCCCceeeeEeeecCCC---cccccEE--EEEECCHHHHHHHHHh-CCCe
Q 001064 1030 EVKSVYVRNLPSTVTAFEI------EEEFQNFGRIKPDGVFVRNRKD---VVGVCYA--FVEFEDISGVQNAIQA-SPIQ 1097 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l------~~~F~~~G~i~~v~i~~~~~~~---g~~kg~a--fV~F~~~~~a~~Al~~-~~~~ 1097 (1167)
+..-+||-+|++.+..+++ .++|++||.|+.+-| ++++ ....+.+ ||+|.+.++|.++|.. .|..
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvv---Nkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVV---NKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEe---cccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 4467899999988877763 679999999998533 3333 1222333 9999999999999988 8999
Q ss_pred eeCcEeEEEeccC
Q 001064 1098 LAGRQVYIEERRP 1110 (1167)
Q Consensus 1098 i~g~~l~V~~~r~ 1110 (1167)
++||.|+..+...
T Consensus 190 ~DGr~lkatYGTT 202 (480)
T COG5175 190 LDGRVLKATYGTT 202 (480)
T ss_pred ccCceEeeecCch
Confidence 9999999876553
No 342
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.23 E-value=0.024 Score=49.21 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=45.8
Q ss_pred cEEEEecCCCCCCHHH----HHHHHhcCC-CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1032 KSVYVRNLPSTVTAFE----IEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~----l~~~F~~~G-~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
..|||.|||.+.+... |++++..|| .|.. + ..|.|+|-|.+.+.|.+|.+. .|-.+.|++|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~----v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS----V-------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEE----E-------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 4689999999988765 467777887 4433 2 236899999999999999987 799999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
.+...
T Consensus 72 ~~~~~ 76 (90)
T PF11608_consen 72 SFSPK 76 (90)
T ss_dssp ESS--
T ss_pred EEcCC
Confidence 98743
No 343
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.21 E-value=0.015 Score=51.17 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIAC---A----NYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~---p----~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
...+..++..+...|++++|+..|++|+... + ....++..++.++...|++++|++.+++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3456667777777777888887777777652 1 112356666777777777777777777777654
No 344
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.20 E-value=0.0066 Score=42.47 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 001064 148 SMDKVVEVYERAVQGVTYSVDIWLHYCIFA 177 (1167)
Q Consensus 148 ~~e~A~~l~eraL~~~P~s~~lw~~ya~~~ 177 (1167)
.+++|+.||+|.|..+| ++..|+.|++|+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhh
Confidence 34556666666666553 355666666554
No 345
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.19 E-value=1.7 Score=48.51 Aligned_cols=155 Identities=7% Similarity=-0.023 Sum_probs=87.2
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhh-hhh----hHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKL-AQD----NIVKIRRVYDAFLAEFPLC--YGYWKKYADHEARVGSM 149 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~-~~~----~~~~ar~~ye~~l~~~P~~--~~~W~~~a~~e~~~~~~ 149 (1167)
.++++++..-.+.|..-.+-++-+..|+-..... ..+ -+..+....+-+++..-.. ..+++++++-..+.-++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666776666666654444333333333322211 012 2233334444444443222 35677777777888889
Q ss_pred HHHHHHHHHHHhccCCCH-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC--C-CCHHHHHHHHHHHHHhh
Q 001064 150 DKVVEVYERAVQGVTYSV-------DIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD--Y-LSFPLWDKYIEYEYMQQ 219 (1167)
Q Consensus 150 e~A~~l~eraL~~~P~s~-------~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d--~-~s~~lw~~y~~~e~~~~ 219 (1167)
.+++.+-.-+|..-.... -+-+..+.+ -++.++++.+.||.|++..... + ..-.+...+..+....+
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl---gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL---GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh---hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 999988888887532222 122222222 2356889999999999864322 1 13456777777777777
Q ss_pred hHHHHHHHHHHHHhc
Q 001064 220 EWSRVAMIYTRILEN 234 (1167)
Q Consensus 220 ~~~~A~~iy~r~l~~ 234 (1167)
+++++.-.-.+++++
T Consensus 177 D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 177 DYEKALFFPCKAAEL 191 (518)
T ss_pred hhhHHhhhhHhHHHH
Confidence 788776666666554
No 346
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.81 Score=48.91 Aligned_cols=213 Identities=11% Similarity=0.070 Sum_probs=144.6
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHH-HHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID-GAR 443 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~-g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~-~A~ 443 (1167)
+.....||+.+-+.||..+|-+..+|.---.++... .+..+-++.+.+.++-+ |++-.+|...-.+.+..|+.. .-+
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccchH
Confidence 345678999999999999999999998777667553 46777788999999877 889999999999999999887 666
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC-----CHHHH
Q 001064 444 AAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR-----NAEKA 518 (1167)
Q Consensus 444 ~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g-----~~~~A 518 (1167)
.+.+.+ +..+.++..+|.-+.......+.++.-..+-.+.|+.+--+.. +|.+-..+.....| .++.=
T Consensus 134 ef~~~~-l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS------AWN~Ryfvi~~~~~~~~~~~le~E 206 (318)
T KOG0530|consen 134 EFTKLM-LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS------AWNQRYFVITNTKGVISKAELERE 206 (318)
T ss_pred HHHHHH-HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc------hhheeeEEEEeccCCccHHHHHHH
Confidence 777776 6778889999988877777788899888888888887643321 33221100000011 24455
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHhHhh-CC---ChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH-HHHHHhhC
Q 001064 519 RQILVDSLDHVQLSKPLLEALIHFESI-QS---SPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVF-LEFLGLFG 593 (1167)
Q Consensus 519 r~i~~kal~~~p~~~~l~~~~~~~e~~-~~---~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~-l~fe~~~G 593 (1167)
..+..+.+...|+|..-|.-+.-+... .| .++-++.+..++ +..... ++..-..|...| .+++....
T Consensus 207 l~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~---~~~~~~-----sP~lla~l~d~~~e~~l~~~~ 278 (318)
T KOG0530|consen 207 LNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY---LQLPKR-----SPFLLAFLLDLYAEDALAYKS 278 (318)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh---hccCCC-----ChhHHHHHHHHHHHHHhhccc
Confidence 677888899999999999755555443 22 122223444443 222221 344455667777 55665554
Q ss_pred C
Q 001064 594 D 594 (1167)
Q Consensus 594 d 594 (1167)
+
T Consensus 279 ~ 279 (318)
T KOG0530|consen 279 S 279 (318)
T ss_pred c
Confidence 3
No 347
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.16 E-value=0.007 Score=42.35 Aligned_cols=30 Identities=30% Similarity=0.608 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 144 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~ 144 (1167)
.+++||.+|++++..+|+ ...|++||++|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 578999999999999987 589999999985
No 348
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.13 Score=56.35 Aligned_cols=153 Identities=16% Similarity=0.075 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCC---CHHHHHHHHHHHHHc
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA-CAN---YPEYWIRYVLCMEAS 401 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~-~p~---~~~~w~~ya~~l~~~ 401 (1167)
++.-+|....++.|+ -.|.++-.|..--+.+--+|+.+.-+.++++.+-. ++. +.-+.-.|+..|+..
T Consensus 117 g~~h~a~~~wdklL~--------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLD--------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred ccccHHHHHHHHHHH--------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 345555566777776 45666777776655555678888888888998865 333 345667788888999
Q ss_pred CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-H---HHHHHHHHHHHHcCCHHHH
Q 001064 402 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL-L---EAIIKHANMERRLGNLEDA 477 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-~---~~~~~~a~~e~r~g~~e~A 477 (1167)
|-+++|.+..+||++++ +.+.......+.+++..|++.++.+...+. ....-.. . ..|--.+.++..-+.++.|
T Consensus 189 g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t-ed~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT-EDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred ccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc-ccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 99999999999999998 777788888999999999999999988874 2222111 1 1244456666666889999
Q ss_pred HHHHHHHHHhh
Q 001064 478 FSLYEQAIAIE 488 (1167)
Q Consensus 478 ~~~~~kAl~~~ 488 (1167)
..+|++-|-..
T Consensus 267 leIyD~ei~k~ 277 (491)
T KOG2610|consen 267 LEIYDREIWKR 277 (491)
T ss_pred HHHHHHHHHHH
Confidence 99998766543
No 349
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=1 Score=47.31 Aligned_cols=178 Identities=16% Similarity=0.139 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 001064 309 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELE-NWHNYLDFIERDGDFNKVVKLYERCLIACANY 387 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~-~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~ 387 (1167)
++.-.+......+|+-.+.+..|-..|.++-. +|.+--+..+.. .+..-...+ +..++++|+.++++++.+..+.
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~---~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~ 106 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAAD---LHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDM 106 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhh
Confidence 33444555567889999999999999988865 454433333221 222223333 4568999999999999885433
Q ss_pred H------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001064 388 P------EYWIRYVLCMEAS-GSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP 455 (1167)
Q Consensus 388 ~------~~w~~ya~~l~~~-g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P 455 (1167)
- ...+.++.+++.. .+++.|+..|+.|-+-+.-. ....++.-|.+.-+.+++.+|+.+|+++....--
T Consensus 107 Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 107 GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3 2455788888764 78999999999998766211 2345666777778889999999999986322222
Q ss_pred ChHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 456 GLLEA------IIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 456 ~~~~~------~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
+++.- +++-+....-..+.-.+...+++..+++|.
T Consensus 187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 22221 233344444445666677777777777774
No 350
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.23 Score=52.74 Aligned_cols=135 Identities=14% Similarity=0.170 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh---hhcC--CChHHHHHHHH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH---TETS--PGLLEAIIKHA 465 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~---~~~~--P~~~~~~~~~a 465 (1167)
-+.|+.++.-.+.+.-....|.+.++.+++..+.+.-.++.+..+.||.+.|...|++.- ..++ -+...+....+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555555566667777888899988878889999999999999999999999998641 1111 22334556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
.+..-.+|+-.+...|.+++..++.+ +.....-+-++.. .|+...|.+.++.+++..|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~------~~a~NnKALcllY-lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRN------AVANNNKALCLLY-LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCc------hhhhchHHHHHHH-HHHHHHHHHHHHHHhccCCcc
Confidence 67777889999999999999887643 3334444555444 899999999999999999864
No 351
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.00 E-value=0.01 Score=42.15 Aligned_cols=31 Identities=35% Similarity=0.773 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 144 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~ 144 (1167)
+++.++.+|++++..+|.+..+|..|++++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 5788999999999999999999999999875
No 352
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.91 E-value=0.071 Score=59.35 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=63.7
Q ss_pred ccEEEEecCC-CCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+..|-|.||. ..+|.+.|-.+|+-||.|.+|+|+. +++ --|.|.+.|...|+-|++. +|+.+.|++|+|...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~-nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY-NKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeee-cCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 4778899985 5689999999999999999988743 432 3799999999999999988 799999999999887
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
|-
T Consensus 371 KH 372 (492)
T KOG1190|consen 371 KH 372 (492)
T ss_pred cC
Confidence 63
No 353
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.87 Score=48.57 Aligned_cols=139 Identities=13% Similarity=0.110 Sum_probs=108.0
Q ss_pred hhhHHHHHHH--------HHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--
Q 001064 351 VTELENWHNY--------LDFIERDGDFNKVVKLYERCLIAC-ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-- 419 (1167)
Q Consensus 351 ~~~~~~W~~y--------~~~~e~~g~~~~a~~~yeral~~~-p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~-- 419 (1167)
...+..|.+- +.++...+++.-.+.+|.+.+..+ +..+-+.-.++..-.+.||.+.|...+++.-+..-
T Consensus 166 ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL 245 (366)
T KOG2796|consen 166 ESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL 245 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence 3446677764 444456678888899999999987 56677777888877788999999988886644321
Q ss_pred ---ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 420 ---KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 420 ---p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
.....++...+.++.-.+++.+|...|.++ ++.+|.++.+....+.+..-+|+...|++.++.++...|.
T Consensus 246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i-~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI-LRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hccchhHHHHhhhhhheecccchHHHHHHHhhc-cccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 123445566677777788999999999997 7789999888888888888889999999999999999985
No 354
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.82 E-value=0.11 Score=57.01 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=55.5
Q ss_pred EecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEEeccCCC
Q 001064 1036 VRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIEERRPNT 1112 (1167)
Q Consensus 1036 V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~~~r~~~ 1112 (1167)
|-|--+.+|.+-|..+-...|+|.+|-|+ +++| --|.|||++.+.|++|..+ ||..|-. ..|+|+++++.+
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIf---kkng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIF---KKNG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEE---eccc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 34555789999999999999999986432 2233 3799999999999999987 8887743 469999998754
No 355
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.81 E-value=0.09 Score=52.58 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
.....++.++...|++++|+.++++++..+|.+..+|..++..+. ..|+...|.++|++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 345566667777788888888888888888888888888888888 67888888888887765
No 356
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.75 E-value=0.023 Score=65.42 Aligned_cols=68 Identities=26% Similarity=0.265 Sum_probs=58.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHh-cCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCee
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQL 1098 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i 1098 (1167)
+.++||||+||.-++.++|..+|. -||.|..++|-+ |.+-+-+||-|=|+|.+..+..+||.+.=+.|
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDt-D~k~KYPkGaGRVtFsnqqsYi~AIsarFvql 437 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDT-DPKLKYPKGAGRVTFSNQQAYIKAISARFVQL 437 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEecc-CcccCCCCCcceeeecccHHHHHHHhhheEEE
Confidence 569999999999999999999998 799999988744 44456689999999999999999999854444
No 357
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.73 E-value=0.018 Score=62.20 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=10.0
Q ss_pred hHhHHHHHHHHh
Q 001064 721 VGSYFVGQYYQV 732 (1167)
Q Consensus 721 vg~~Fv~~YY~~ 732 (1167)
+-.+|-..||..
T Consensus 206 ~~~~~~~ey~~R 217 (465)
T KOG3973|consen 206 QCESFSREYYNR 217 (465)
T ss_pred HHHHHHHHHHHH
Confidence 667899999976
No 358
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.66 E-value=5.1 Score=48.28 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
++.|-...++++|.+.|+..- + -..+++.+-...+++. +|.+....|.+.++.-.+++.+
T Consensus 803 g~~fa~~~~We~A~~yY~~~~----------~------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 803 GETFAEMMEWEEAAKYYSYCG----------D------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----------c------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHH
Confidence 344555666777777776542 1 2234444444444443 3445555678888888888888
Q ss_pred HHcCCHHHHHHHHHH
Q 001064 399 EASGSMDLAHNALAR 413 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~r 413 (1167)
...|--++|...|-|
T Consensus 863 ~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 863 TSVGMCDQAVEAYLR 877 (1189)
T ss_pred HhhchHHHHHHHHHh
Confidence 778877777766643
No 359
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=95.64 E-value=0.061 Score=57.97 Aligned_cols=119 Identities=19% Similarity=0.255 Sum_probs=85.2
Q ss_pred CCc-chhHhHHHHHHHHhhhc--CcccccccccCCceEE-EE-cCCc-ccch-hchHHHHHHHhcCCCcce-----eEee
Q 001064 716 AYP-AQVGSYFVGQYYQVLQQ--QPDLVHQFYSDASSMI-RV-DGDS-TESA-SSMLDIHSLVISLNFTAI-----EIKT 783 (1167)
Q Consensus 716 ~~~-~~vg~~Fv~~YY~~l~~--~p~~l~~fY~~~s~~~-~~-~g~~-~~~~-~~~~~i~~~~~~l~~~~~-----~i~~ 783 (1167)
.|| ...|..|.+.||.+|+. +-=....|+.|- .+- .+ .++. ..-. .|-+.+..+|.+|..+.. .+++
T Consensus 124 ~~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da-~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~ 202 (262)
T PF15008_consen 124 QYPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDA-KLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDS 202 (262)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccChhhccCCC-eEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCC
Confidence 444 45999999999999998 433466788884 332 22 2222 2222 566778889999976542 3554
Q ss_pred --eeccccCCCceEEEEEEEEEecCccccceeEEEEEEeeeC---CeEEEEcceEEec
Q 001064 784 --INSLGSWNGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE---KGYFVLNDIFHFL 836 (1167)
Q Consensus 784 --~d~q~~~~~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nd~fr~~ 836 (1167)
+.|-.++.|-|+|.|.|+|-.++.+ -=-|=|+|=|...+ |.|.|.+=-+|..
T Consensus 203 ~G~k~~~~phGlV~V~v~GTvH~~~~C-lGiFEq~FGLiRdP~~~N~WKiK~~~l~i~ 259 (262)
T PF15008_consen 203 DGVKGRISPHGLVLVAVCGTVHRDNTC-LGIFEQIFGLIRDPFAENNWKIKFVNLRIR 259 (262)
T ss_pred CCcceEEcCCCcEEEEEeeeEecCCce-EeehhhhhhcccCccccCceeEEEEEEEEE
Confidence 6677788888999999999887664 34599999999775 8999987666654
No 360
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.34 Score=52.89 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=92.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
...+++..+..+|..++...+.+.++-+-|+.+|...|+.+.|..+|...=.....+..........++++..+..+...
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 35688999999999999999999999999999999999999999988653221101111111234566777666665555
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+-.+ ...+|++.++-+..+..+.-.|+.++|.+.+-..+..+.
T Consensus 225 l~~~--~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 225 LQRR--LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHH--HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5444 356999999999999999999999999888777776653
No 361
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.53 E-value=2.1 Score=46.17 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=88.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHc---CC-------HHHHHHHHHHHHHhhhccChHHHH
Q 001064 359 NYLDFIERDGDFNKVVKLYERCLIACANYPEY-WIRYVLCMEAS---GS-------MDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 359 ~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~-w~~ya~~l~~~---g~-------~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
.++--.-+.++++.|+...+|-+...|.++++ |..|...+..- .+ ..+|..-|+..+..+ |++.-.-.
T Consensus 76 ~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-PnS~Ya~d 154 (254)
T COG4105 76 DLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-PNSRYAPD 154 (254)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-CCCcchhh
Confidence 33333347799999999999999999998873 44444444322 11 235667777778777 55432211
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHH
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRF 507 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~ 507 (1167)
...++-. +..++ ...=+..+.++.+.|.+..|..-++..++..+...+ ..+.+..+...
T Consensus 155 A~~~i~~----~~d~L--------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~---~~eaL~~l~ea 213 (254)
T COG4105 155 AKARIVK----LNDAL--------------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA---VREALARLEEA 213 (254)
T ss_pred HHHHHHH----HHHHH--------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc---hHHHHHHHHHH
Confidence 1111100 00111 111234567888999999999999999998764322 12233334444
Q ss_pred HHHHhCCHHHHHHHHHHHHhh-cCCCH
Q 001064 508 LHLVSRNAEKARQILVDSLDH-VQLSK 533 (1167)
Q Consensus 508 ~~~~~g~~~~Ar~i~~kal~~-~p~~~ 533 (1167)
.+ ..|-.++|.+. .+.|.. .|++.
T Consensus 214 Y~-~lgl~~~a~~~-~~vl~~N~p~s~ 238 (254)
T COG4105 214 YY-ALGLTDEAKKT-AKVLGANYPDSQ 238 (254)
T ss_pred HH-HhCChHHHHHH-HHHHHhcCCCCc
Confidence 33 38877777765 445554 46665
No 362
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.51 E-value=0.042 Score=50.50 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=50.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecC------CCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEe-
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR------KDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQV- 1103 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~------~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l- 1103 (1167)
.+.|.|-+.|.. ....+-+.|++||.|.+..-..++. ......++-.|.|+++.+|.+||..||..|+|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 467888899987 4556779999999997642001110 01124568999999999999999999999998754
Q ss_pred EEEec
Q 001064 1104 YIEER 1108 (1167)
Q Consensus 1104 ~V~~~ 1108 (1167)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 35544
No 363
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.47 E-value=1 Score=52.66 Aligned_cols=54 Identities=7% Similarity=0.019 Sum_probs=41.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 140 ADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 140 a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
..-..+..+..+-+++-.+||++.|++.+.|+.++.=. ...+.++..+|++|++
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe---A~Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE---ASTIVEAEELLRQAVK 228 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc---ccCHHHHHHHHHHHHH
Confidence 33444667888888888899999999988887776542 3457888888998887
No 364
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.03 Score=64.49 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=48.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCc--cccc---EEEEEECCHHHHHHHHHh
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVC---YAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g--~~kg---~afV~F~~~~~a~~Al~~ 1093 (1167)
-.++||||+||++++|+.|...|..||.++- +-..+....+ ..+| |+|+.|+++.++..-|.+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 4689999999999999999999999999862 2111111111 2456 999999999998877765
No 365
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.40 E-value=0.034 Score=39.94 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
.+|..++.++...|++++|++.|+++|.+.|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777776653
No 366
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.28 Score=52.23 Aligned_cols=118 Identities=13% Similarity=0.191 Sum_probs=87.5
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH-HHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMD-KVVEV 155 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e-~A~~l 155 (1167)
..-+.|+...+.+|.+||-++..|..--.++..+ ..++.+-...+++.+..+|.|+..|..--.+....|+.. +=.++
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l-~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHL-MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 4556788888899999999999998766666665 356777788899999999999999988888877788777 66778
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 156 YERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 156 ~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
.+++|.....+.-.|.+- +|.+...++++.-...-.+.|.
T Consensus 136 ~~~~l~~DaKNYHaWshR-qW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHR-QWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHHHhccccchhhhHHH-HHHHHHHhhHHHHHHHHHHHHH
Confidence 888888877788888654 5555344555544444444443
No 367
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=95.36 E-value=0.073 Score=62.41 Aligned_cols=112 Identities=22% Similarity=0.288 Sum_probs=79.2
Q ss_pred hhHhHHHHHHHHhhhcCcc-cccccccCCceEEE-EcCCcc------------------------------cchhchHHH
Q 001064 720 QVGSYFVGQYYQVLQQQPD-LVHQFYSDASSMIR-VDGDST------------------------------ESASSMLDI 767 (1167)
Q Consensus 720 ~vg~~Fv~~YY~~l~~~p~-~l~~fY~~~s~~~~-~~g~~~------------------------------~~~~~~~~i 767 (1167)
++-.+|+++||...+++.. .+-..|+++|+|.+ .+.... ....|..+|
T Consensus 339 ~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g~~~I 418 (585)
T KOG3763|consen 339 QLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHGACDI 418 (585)
T ss_pred HHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhccchHH
Confidence 4667999999999996544 46677788888874 221100 123466799
Q ss_pred HHHHhcCCCcceeE----eeeeccccCCCceEEEEEEEEEecCcc---ccce---eEEEEEEeeeC-CeEEEEcceE
Q 001064 768 HSLVISLNFTAIEI----KTINSLGSWNGGVLVMVSGSVKTKEFC---RRRK---FVQTFFLAPQE-KGYFVLNDIF 833 (1167)
Q Consensus 768 ~~~~~~l~~~~~~i----~~~d~q~~~~~~i~v~v~G~~~~~~~~---~~~~---F~q~F~L~~~~-~~y~v~nd~f 833 (1167)
...|..||-+.+.. ..+-+|. ..++.+.|.|.+.-.+.. .-+. |+-||+..|.+ .+-.|.||.+
T Consensus 419 v~aLs~LPkT~Hdl~s~vvDv~~~~--~~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~iv~d~L 493 (585)
T KOG3763|consen 419 VVALSALPKTQHDLDSFVVDVWYQT--GNLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLAIVNDQL 493 (585)
T ss_pred HHHHHhCccchhhhhhhheeeeecc--cceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceEEEecee
Confidence 99999999887643 3444444 357889999998543221 1233 99999999998 5899999988
No 368
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.33 E-value=0.17 Score=50.42 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=48.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 1093 (1167)
...+|.|.+||.+.++++|+++..+-|.|....| .+ -|.+.|+|...++++-||..
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv-~r-------Dg~GvV~~~r~eDMkYAvr~ 169 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADV-QR-------DGVGVVEYLRKEDMKYAVRK 169 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeee-ec-------ccceeeeeeehhhHHHHHHh
Confidence 4589999999999999999999999999987664 21 25899999999999999976
No 369
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.33 E-value=1.6 Score=49.41 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=49.4
Q ss_pred cCChHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--c-c--ChHHHHHHHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYP------EYWIRYVLCMEASGSMDLAHNALARATHVFV--K-R--LPEIHLFAARFKEQ 435 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~------~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--p-~--~~~l~~~~a~~~e~ 435 (1167)
.|+++.++..-+.-|.+...+- .++-.++.++.-.|+++.|.+.|++++.+.. . + ....-+.++..+..
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 4778877776666555422221 2555666777777889999988888765431 1 1 12333444555555
Q ss_pred cCCHHHHHHHHHH
Q 001064 436 NGDIDGARAAYQL 448 (1167)
Q Consensus 436 ~g~~~~A~~~~~~ 448 (1167)
..++++|+..+.+
T Consensus 288 l~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 288 LKEVQKAITYHQR 300 (639)
T ss_pred HHHHHHHHHHHHH
Confidence 6667777766665
No 370
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.29 E-value=0.62 Score=56.24 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=106.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHH------HHHHHH-HHHH----HcCCHHHHHHHHHHHHHhhhccChHHHH
Q 001064 359 NYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYV-LCME----ASGSMDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 359 ~y~~~~e~~g~~~~a~~~yeral~~~p~~~~------~w~~ya-~~l~----~~g~~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
+.+.+.=-.||-+..+.++.+|.....-... +|+..+ ..+. ...+.+.|..++.+..+.+ |+..-..+
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lfl~ 271 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALFLF 271 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 3333333368999999999999875322221 222222 1111 1345688999999999999 78888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTETSPGLLE----AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 503 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~----~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~ 503 (1167)
+.++++...|++++|...|++++ .....-.. .++.++....-+.++++|..+|.+.++.... ...+|..
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~-~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W------Ska~Y~Y 344 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAI-ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW------SKAFYAY 344 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhc-cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc------HHHHHHH
Confidence 89999999999999999999873 22222111 2455555666789999999999999987632 1334433
Q ss_pred HHHHHHHHhCCH-------HHHHHHHHHHHh
Q 001064 504 YSRFLHLVSRNA-------EKARQILVDSLD 527 (1167)
Q Consensus 504 ~a~~~~~~~g~~-------~~Ar~i~~kal~ 527 (1167)
.+...+...|+. ++|.++|+++-.
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 333333347878 666666666543
No 371
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.24 E-value=0.044 Score=39.34 Aligned_cols=34 Identities=12% Similarity=-0.010 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 498 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 498 ~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+.+|..+|.+++. .|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 3578888988887 999999999999999999975
No 372
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.95 Score=49.82 Aligned_cols=157 Identities=13% Similarity=-0.044 Sum_probs=115.7
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC---hHHHHHHHHHHHHcCCHHHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAARFKEQNGDIDGA 442 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~---~~l~~~~a~~~e~~g~~~~A 442 (1167)
..|++-+|-..+++.|...|.+--.|..--..+...|+.+.-+..+++.+-...++. .-++-+|+.-+++.|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 457788888899999999999888887777777778888888888888876532333 45667788889999999999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 443 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL 522 (1167)
Q Consensus 443 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~ 522 (1167)
.+.-+++ +++++.++=+....+.++.-.|+++++.+.+.+--..=. +.+.....=|-+.+-|+.. .+.++.|.+||
T Consensus 195 Ek~A~ra-lqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr--~s~mlasHNyWH~Al~~iE-~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRA-LQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR--QSWMLASHNYWHTALFHIE-GAEYEKALEIY 270 (491)
T ss_pred HHHHHhh-ccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh--hhhHHHhhhhHHHHHhhhc-ccchhHHHHHH
Confidence 9999998 789998876667777777788999999888775322111 1000011124456666554 67899999999
Q ss_pred HHHH
Q 001064 523 VDSL 526 (1167)
Q Consensus 523 ~kal 526 (1167)
.+-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8754
No 373
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.15 E-value=6.9 Score=50.38 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
.|-.-.++.++.+-+.+++.+|.--... +..++..||..|.....+++|.-.|+++
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye~~ 965 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYERC 965 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 3445555556666555555444332211 2235555666555555555554444433
No 374
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.14 E-value=1.3 Score=50.87 Aligned_cols=172 Identities=16% Similarity=0.098 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---hccChHHHHHHHHHHHH---cCCHHHHHHHHHHHhhhcCCChHH
Q 001064 386 NYPEYWIRYVLCMEASGSMDLAHNALARATHVF---VKRLPEIHLFAARFKEQ---NGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 386 ~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~---~p~~~~l~~~~a~~~e~---~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
..+++.+.+...+....+++..+++.+..-.+. ..+.+.+.+.||..+.+ .|+.++|+.++..++....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 345667777766767778888887776665441 24577888899999998 999999999999965666777788
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC-H---HHHHHHHHHH-
Q 001064 460 AIIKHANMERRL---------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN-A---EKARQILVDS- 525 (1167)
Q Consensus 460 ~~~~~a~~e~r~---------g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~-~---~~Ar~i~~ka- 525 (1167)
++...+.++.++ ..+++|+..|+++.+..++ .. --++++-++.. .|. . .+.+++--+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y------~GIN~AtLL~~-~g~~~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YY------SGINAATLLML-AGHDFETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-cc------chHHHHHHHHH-cCCcccchHHHHHHHHHHH
Confidence 776666554322 2478999999999998842 11 11455555554 443 2 2334433111
Q ss_pred --H-h--hcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcC
Q 001064 526 --L-D--HVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSN 566 (1167)
Q Consensus 526 --l-~--~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~ 566 (1167)
+ + .......+|+.--.+|..... .+.+.+.+++++++...
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~-~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLA-GDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcC
Confidence 1 1 112335788755555554421 12566888899988764
No 375
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.08 E-value=0.027 Score=68.62 Aligned_cols=17 Identities=29% Similarity=0.130 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhhCCH
Q 001064 579 EELSCVFLEFLGLFGDA 595 (1167)
Q Consensus 579 ~~i~~~~l~fe~~~Gd~ 595 (1167)
..++-.|+.-...+|++
T Consensus 656 i~~L~~~ll~~~~fg~~ 672 (1282)
T KOG0921|consen 656 IMTLCNRLLEHQEFGQA 672 (1282)
T ss_pred hhhhhhhhhhhhhhccc
Confidence 33444444444445544
No 376
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.08 E-value=0.07 Score=55.35 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=59.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-CcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~-g~~l~V~~ 1107 (1167)
+...+|+.|||..++.+.+..+|.+|.-.+.++. +... ++.|||+|.+...+..|... .+..|. ...+.|.+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~-i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRL-IPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEe-ccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 3589999999999999999999999999988763 4322 47999999998887878776 577766 66677766
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 53
No 377
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.07 E-value=0.045 Score=44.14 Aligned_cols=52 Identities=19% Similarity=0.389 Sum_probs=40.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHH
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI 1091 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al 1091 (1167)
+.|-|.|.+.+..+ .+..+|..||+|..+.+ . ....+.+|.|.+..++++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~--~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYV--P-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEc--C-----CCCcEEEEEECCHHHHHhhC
Confidence 56778888877654 45569999999988543 2 13459999999999999885
No 378
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.91 E-value=0.87 Score=52.85 Aligned_cols=158 Identities=15% Similarity=0.066 Sum_probs=103.9
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----c---------------------cCh
Q 001064 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV----K---------------------RLP 423 (1167)
Q Consensus 369 ~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~----p---------------------~~~ 423 (1167)
|.+..+.+ |..+|.+.+..+.++.++..+|+...|.++++||+=.+. + .+.
T Consensus 25 Dp~~l~~l----l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR 100 (360)
T PF04910_consen 25 DPNALINL----LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR 100 (360)
T ss_pred CHHHHHHH----HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch
Confidence 55554433 455788888888888888888888777777777754332 1 122
Q ss_pred HHHH---HHHHHHHHcCCHHHHHHHHHHHhhhcCCC-hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhCCCccCchH
Q 001064 424 EIHL---FAARFKEQNGDIDGARAAYQLVHTETSPG-LLEAIIKHANME-RRLGNLEDAFSLYEQAIAIEKGKEHSQTLP 498 (1167)
Q Consensus 424 ~l~~---~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-~~~~~~~~a~~e-~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~ 498 (1167)
.+|+ .+...+.+.|-+.-|.+..+-+ ..++|. ++...+.+++++ .+.++++-.+.+++........+ ....+|
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlL-lsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~-~~~~lP 178 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLL-LSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN-WLSLLP 178 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh-hhhhCc
Confidence 3333 3566778899999999988776 789998 776655566644 56688888888888766531110 000134
Q ss_pred HHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHhhcCCCH
Q 001064 499 MLYAQYSRFLHLVSRNA---------------EKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 499 ~l~~~~a~~~~~~~g~~---------------~~Ar~i~~kal~~~p~~~ 533 (1167)
.+....+-.++. .++. ++|+..+.+|+..+|.-.
T Consensus 179 n~a~S~aLA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 179 NFAFSIALAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred cHHHHHHHHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 454444444344 5555 899999999999998644
No 379
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.84 E-value=8 Score=46.71 Aligned_cols=187 Identities=14% Similarity=0.063 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccCCCChh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001064 321 MYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 399 (1167)
Q Consensus 321 ~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~-~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~ 399 (1167)
++++.+++-.....+...-. -.|.. .-+.|+..++..-..-.++.|.+.|.+|-.. . +++.+|.
T Consensus 769 lr~klgDwfrV~qL~r~g~~-------d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-e-------~~~ecly 833 (1189)
T KOG2041|consen 769 LRKKLGDWFRVYQLIRNGGS-------DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-E-------NQIECLY 833 (1189)
T ss_pred HHHhhhhHHHHHHHHHccCC-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-H-------hHHHHHH
Confidence 34555666655555543221 01222 2357777777665566677788888776543 1 2222222
Q ss_pred HcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001064 400 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 479 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~ 479 (1167)
....+++.. ...... |.+..+.-..|++....|.-++|...|-+. ..|.-.- .....++...+|.+
T Consensus 834 ~le~f~~LE----~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~pkaAv------~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 834 RLELFGELE----VLARTL-PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLPKAAV------HTCVELNQWGEAVE 899 (1189)
T ss_pred HHHhhhhHH----HHHHhc-CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCcHHHH------HHHHHHHHHHHHHH
Confidence 222333222 112222 677778888899999999999998887764 2332111 11111222333333
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhC
Q 001064 480 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 546 (1167)
Q Consensus 480 ~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~ 546 (1167)
+-++. + -+....+...++.-+.. .++..+|.+.++++=.+ -+...|+..++.-|...
T Consensus 900 laq~~-~-------l~qv~tliak~aaqll~-~~~~~eaIe~~Rka~~~-~daarll~qmae~e~~K 956 (1189)
T KOG2041|consen 900 LAQRF-Q-------LPQVQTLIAKQAAQLLA-DANHMEAIEKDRKAGRH-LDAARLLSQMAEREQEK 956 (1189)
T ss_pred HHHhc-c-------chhHHHHHHHHHHHHHh-hcchHHHHHHhhhcccc-hhHHHHHHHHhHHHhhc
Confidence 32211 0 11112344444333333 67788888888777322 23445555555554443
No 380
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.82 Score=48.25 Aligned_cols=117 Identities=14% Similarity=0.157 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
.+.+.-+.-+-+.|++.+|...|..|+.+..+ ...-++-|+.+ -.+ +. ....-+++.|..++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~--------L~lkEkP~e~e-W~e-Ld-------k~~tpLllNy~QC~L 241 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRN--------LQLKEKPGEPE-WLE-LD-------KMITPLLLNYCQCLL 241 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH--------HHhccCCCChH-HHH-HH-------HhhhHHHHhHHHHHh
Confidence 34444454445667777777777777765211 11111112111 000 00 112236778888888
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
..|++-++++....+ +...|++..+++.++......-|..+|..-|.++|+++|
T Consensus 242 ~~~e~yevleh~sei-L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEI-LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 889999999988887 788999999999999998888899999999999999986
No 381
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=29 Score=48.37 Aligned_cols=134 Identities=27% Similarity=0.372 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIAC-------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 426 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-------p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~ 426 (1167)
-++|..-+..-....+..+-+-.++|++... ..-.+.|+.+|++-...|.++.|.+.+-.|.+. .-++++
T Consensus 1629 sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---r~~~i~ 1705 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES---RLPEIV 1705 (2382)
T ss_pred chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---ccchHH
Confidence 3678887766544444555566666666542 123479999999888899999999998888774 378999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------------hH----HHHHHHHHHHHHcCCH--HHHHHHHHHHHHhh
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPG------------LL----EAIIKHANMERRLGNL--EDAFSLYEQAIAIE 488 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------------~~----~~~~~~a~~e~r~g~~--e~A~~~~~kAl~~~ 488 (1167)
+..|.+++..|+-..|+.+++..+..-.|+ +. .+.+.+..+....+++ +.....|..+.+..
T Consensus 1706 ~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1706 LERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 999999999999999999999874232333 11 1344555555555664 67888999999998
Q ss_pred hC
Q 001064 489 KG 490 (1167)
Q Consensus 489 ~~ 490 (1167)
+.
T Consensus 1786 ~e 1787 (2382)
T KOG0890|consen 1786 PE 1787 (2382)
T ss_pred cc
Confidence 74
No 382
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.62 E-value=0.021 Score=63.38 Aligned_cols=72 Identities=28% Similarity=0.317 Sum_probs=56.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l~V~ 1106 (1167)
+++-|.++|||++++|++|-+++.+||.|..+.+ + +++.-||++|.|.++|...+.. -.-.+.|+.|.|.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~-l------kGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLM-L------KGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeee-e------ccchhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 5689999999999999999999999999998543 2 2455899999998887664432 2566788888886
Q ss_pred ec
Q 001064 1107 ER 1108 (1167)
Q Consensus 1107 ~~ 1108 (1167)
+.
T Consensus 100 ~s 101 (492)
T KOG1190|consen 100 YS 101 (492)
T ss_pred hh
Confidence 53
No 383
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.57 E-value=1.3 Score=52.54 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 506 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~ 506 (1167)
...+..+.+...+.-|-++|.++. . . -..+++....++.++|..+-++-=+ ..+.+|..|+.
T Consensus 751 ~~~a~ylk~l~~~gLAaeIF~k~g-D-----~---ksiVqlHve~~~W~eAFalAe~hPe---------~~~dVy~pyaq 812 (1081)
T KOG1538|consen 751 LLCATYLKKLDSPGLAAEIFLKMG-D-----L---KSLVQLHVETQRWDEAFALAEKHPE---------FKDDVYMPYAQ 812 (1081)
T ss_pred HHHHHHHhhccccchHHHHHHHhc-c-----H---HHHhhheeecccchHhHhhhhhCcc---------ccccccchHHH
Confidence 334444555555555666666541 1 0 1233444456777887776554322 23568899999
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q 001064 507 FLHLVSRNAEKARQILVDS 525 (1167)
Q Consensus 507 ~~~~~~g~~~~Ar~i~~ka 525 (1167)
|+.. ..++++|-+.|-+|
T Consensus 813 wLAE-~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 813 WLAE-NDRFEEAQKAFHKA 830 (1081)
T ss_pred Hhhh-hhhHHHHHHHHHHh
Confidence 9887 78899999988877
No 384
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.52 E-value=0.026 Score=61.94 Aligned_cols=74 Identities=26% Similarity=0.271 Sum_probs=57.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCce--eeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIK--PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
-.|-.++||+++++.++.++|..--.|. ..+|+...+..|+..|-|||.|..+++++.||..+...|+.|-|.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566789999999999999997332332 1224444566788999999999999999999998877777776655
No 385
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=17 Score=45.00 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
+.+++|..+-+.....-|. -...|..|++++.-.++++.|-.++-+++. ++...|........
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---NNAAEWELWVFKFA 434 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc---chHHHHHHHHHHhc
Confidence 4566666665555444443 347899999999999999999887766664 67788877765544
No 386
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.50 E-value=0.21 Score=49.84 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
.....++..+...|++++++.++++++..+|.+..+|..++..+...|+..+|+.+|++.....
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4566777777889999999999999999999999999999999999999999999998887654
No 387
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.44 E-value=0.11 Score=61.53 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=65.0
Q ss_pred Ccc-EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVK-SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~-~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
+++ .|-|.|+|++++-+||.++|.-|-.+-. .|.++....|+..|-+.|-|++.++|.+|... ++..|..|.|++..
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~-sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPN-SIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCC-ceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 455 6779999999999999999999976644 25567677799999999999999999999876 79999999888753
No 388
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.43 E-value=0.068 Score=38.44 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTY 165 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 165 (1167)
..|...+..+..++++++|+..|+++|++.|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777777777777777777777777764
No 389
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.34 E-value=0.46 Score=53.45 Aligned_cols=92 Identities=20% Similarity=0.105 Sum_probs=48.1
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGL------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 506 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~ 506 (1167)
+.-.|+++.|+..-+.- +++.-.. -.++..+++.+.=+|+++.|.+.|++.+.+...-..-..-...-..++.
T Consensus 205 yYlLGdf~~ai~~H~~R-L~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgN 283 (639)
T KOG1130|consen 205 YYLLGDFDQAIHFHKLR-LEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGN 283 (639)
T ss_pred eeeeccHHHHHHHHHHH-HHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhh
Confidence 34457777776554421 1111111 1234445555666789999999999887754310000000112234555
Q ss_pred HHHHHhCCHHHHHHHHHHHH
Q 001064 507 FLHLVSRNAEKARQILVDSL 526 (1167)
Q Consensus 507 ~~~~~~g~~~~Ar~i~~kal 526 (1167)
.++. ..++++|+.++.+-|
T Consensus 284 tytl-l~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 284 TYTL-LKEVQKAITYHQRHL 302 (639)
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 5444 556777777766654
No 390
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.32 Score=51.14 Aligned_cols=116 Identities=16% Similarity=0.050 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 401 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~ 401 (1167)
+...++|..|+..|-++|. ++|.....|.+-+..+.+.++++.+..-..|++...|+.....+.++.++...
T Consensus 20 ~f~~k~y~~ai~~y~raI~--------~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--------INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred ccchhhhchHHHHHHHHHh--------cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 4456778888888888887 66666777888888777888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhhh----ccChHHHHHHHHHHHHcCCHHHHHHH
Q 001064 402 GSMDLAHNALARATHVFV----KRLPEIHLFAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~----p~~~~l~~~~a~~~e~~g~~~~A~~~ 445 (1167)
..+++|+.+|.||..+.- +.-..++..+-....+.=+..+.+.+
T Consensus 92 ~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred ccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 888888888888855431 11234555544443333333333333
No 391
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.15 E-value=5.2 Score=47.82 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 001064 98 SAWTALLEETEKLAQDNIVKIRRVYDAF 125 (1167)
Q Consensus 98 ~aw~~L~~~~~~~~~~~~~~ar~~ye~~ 125 (1167)
.-|..|+...... =+++-||++|.+.
T Consensus 586 ~DW~~LA~~ALeA--L~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 586 TDWRELAMEALEA--LDFETARKAYIRV 611 (1081)
T ss_pred chHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 3477777765442 3677788887776
No 392
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.01 E-value=0.14 Score=49.99 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEeccCCC
Q 001064 1046 FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRPNT 1112 (1167)
Q Consensus 1046 ~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r~~~ 1112 (1167)
.+|-+.|..||.+.-+++ + .+.-.|+|.+-.+|.+|+..+|..++|+.|+|..+.+..
T Consensus 51 ~~ll~~~~~~GevvLvRf-v--------~~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRF-V--------GDTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHHCCS-ECEEEE-E--------TTCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHHhCCceEEEEE-e--------CCeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 367788999999865432 2 146799999999999999999999999999999887654
No 393
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=1.3 Score=46.79 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
.++.+|.+++...|++-++++.....+..+ |.+...++..|......-+.++|+.-|.++ ++++|....+..+
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~v-L~ldpslasvVsr 303 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKV-LELDPSLASVVSR 303 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHH-HhcChhhHHHHHH
Confidence 378899999998899999998888888877 889999999999999999999999999998 8999987766543
No 394
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.75 E-value=2 Score=44.46 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACAN---YPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~---~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
...|..+++++.+.||.+.|++.|.++...|.. ..++++..+.+....+++..+...+.++-...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999988743 34688888887777889988888888887654
No 395
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.70 E-value=53 Score=47.76 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---h-CCHH---HHHHHHHHHHhhcC
Q 001064 458 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---S-RNAE---KARQILVDSLDHVQ 530 (1167)
Q Consensus 458 ~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~-g~~~---~Ar~i~~kal~~~p 530 (1167)
.+.+...+.|..++|+.++|-..|..|+++..+ .+..|..||.++... . ++.. .|...|-+|....-
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~------l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~ 2885 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDG------LGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYN 2885 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcccc
Confidence 345677888999999999999999999999843 367888888887653 1 2233 44554555555442
Q ss_pred CC--HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHH---HhhCCHHHHHHHHHHH
Q 001064 531 LS--KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFL---GLFGDAQLIKKAEDRH 605 (1167)
Q Consensus 531 ~~--~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe---~~~Gd~~~~~~v~~r~ 605 (1167)
.+ ..+.-...++....... .-+-+.|++.+..-+-. -|--|+=-+ ..+++-..+.-+..++
T Consensus 2886 ~skaRk~iakvLwLls~dda~---~~l~~~~~k~l~~ip~~-----------~wl~~IPQLl~sLs~~e~~~~~~iL~ki 2951 (3550)
T KOG0889|consen 2886 SSKARKLIAKVLWLLSFDDSL---GTLGDVFDKFLGEIPVW-----------NWLYFIPQLLTSLSKKEAKLVRLILIKI 2951 (3550)
T ss_pred chhhHHHHHHHHHHHHhcccc---chHHHHHHHhhccCCch-----------hhhhhhHHHHhhccccchhHHHHHHHHH
Confidence 22 23333333333322221 12456677777654321 233343322 3356778888888888
Q ss_pred HhhhCC
Q 001064 606 ARLFLP 611 (1167)
Q Consensus 606 ~~~~~~ 611 (1167)
.+.+|-
T Consensus 2952 a~~yPQ 2957 (3550)
T KOG0889|consen 2952 AKSYPQ 2957 (3550)
T ss_pred HHhchH
Confidence 888875
No 396
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=93.69 E-value=0.037 Score=58.00 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=54.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCC--------ccccc----EEEEEECCHHHHHHHHHh-CCCee
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD--------VVGVC----YAFVEFEDISGVQNAIQA-SPIQL 1098 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~--------g~~kg----~afV~F~~~~~a~~Al~~-~~~~i 1098 (1167)
.-||+++||+.+...-|+++|+.||.|-.|-+. ....+ |..++ -|.|+|.+...|..+... |+..|
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylq-pE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQ-PEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEec-chhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 679999999999999999999999999886432 22212 22222 267999999988887766 89999
Q ss_pred eCcE
Q 001064 1099 AGRQ 1102 (1167)
Q Consensus 1099 ~g~~ 1102 (1167)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9975
No 397
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.69 E-value=10 Score=42.43 Aligned_cols=156 Identities=14% Similarity=0.020 Sum_probs=102.0
Q ss_pred HcCChHHHHHHHHHHHHhc-CCCHH-------HHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhc------c-------Ch
Q 001064 366 RDGDFNKVVKLYERCLIAC-ANYPE-------YWIRYVLCMEASG-SMDLAHNALARATHVFVK------R-------LP 423 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~-p~~~~-------~w~~ya~~l~~~g-~~e~A~~vl~rA~~~~~p------~-------~~ 423 (1167)
+.||.+.|...|.||-... ...++ +.+..+.-+...+ ++++|...+++|.++... . ..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 5689999999999988764 33443 6677777677778 999999999999998521 1 22
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001064 424 EIHLFAARFKEQNGDID---GARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 500 (1167)
Q Consensus 424 ~l~~~~a~~~e~~g~~~---~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l 500 (1167)
.+...++..+...+..+ +|..+++.+ ..-.|+.+.+++....+..+.++.+++.+++.+++....-. ...-..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l-~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~---e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLL-ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS---ESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc---cchHHH
Confidence 34555666666666554 355555554 44467778888777777777889999999999999876411 111223
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 001064 501 YAQYSRFLHLVSRNAEKARQILVDSLD 527 (1167)
Q Consensus 501 ~~~~a~~~~~~~g~~~~Ar~i~~kal~ 527 (1167)
.++..+.+.. .+...|...+...|-
T Consensus 161 ~l~~i~~l~~--~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 161 ILHHIKQLAE--KSPELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHHHh--hCcHHHHHHHHHHHH
Confidence 3333333232 334566666666554
No 398
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=1.7 Score=47.73 Aligned_cols=116 Identities=9% Similarity=-0.067 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHH---HHHHHHhhcCCHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLH---YCIFAINTYGDPETIR 188 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~---ya~~~~~~~~~~~~Ar 188 (1167)
.+++..+..+|+.++...|.+..+-+.|++.+...|+.+.|..++...=... ..+-|.. .+.++. +..+..+.
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~--~~~~~~~l~a~i~ll~-qaa~~~~~- 222 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA--QDKAAHGLQAQIELLE-QAAATPEI- 222 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--hhhHHHHHHHHHHHHH-HHhcCCCH-
Confidence 4677777777777777777777777777777777777777777765432221 2223333 233333 22222222
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001064 189 RLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 189 ~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
..+++.+. .|+.+..+...++..+...|+.+.|...+-.+|..
T Consensus 223 ~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22344444 33334666677777666677777776666666654
No 399
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=19 Score=42.19 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=102.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHH----HHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACAN----------YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH----LFAA 430 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~----------~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~----~~~a 430 (1167)
.-.|++.+|+.....+..-|-. .+.+.+-.+.+-...+.++.|..-|..|++... ..++| +.+|
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~--~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE--SIDLQAFCNLNLA 411 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh--HHHHHHHHHHhHH
Confidence 3568888777666655554422 233555555555566789999999999988652 33333 3467
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGL----------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 500 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~----------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l 500 (1167)
..+.+.|+-+.-.++++.+ .|.+ ..+++.++.+...++++.+|+..+.+.|+... .++...+-..
T Consensus 412 i~YL~~~~~ed~y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman-aed~~rL~a~ 486 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN-AEDLNRLTAC 486 (629)
T ss_pred HHHHHhccHHHHHHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-hhhHHHHHHH
Confidence 7777888766666665554 3432 23578888888999999999999999999873 2221111112
Q ss_pred H-HHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 501 Y-AQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 501 ~-~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
. .-++.+. ...||-.+++++..-++++-
T Consensus 487 ~LvLLs~v~-lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 487 SLVLLSHVF-LSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHHHHHHH-HHhcchHHHHhccchHHHHH
Confidence 2 2334443 35999999999999988754
No 400
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.47 E-value=0.33 Score=58.40 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=5.6
Q ss_pred HHHHHHHhhh
Q 001064 725 FVGQYYQVLQ 734 (1167)
Q Consensus 725 Fv~~YY~~l~ 734 (1167)
|-+|||.+..
T Consensus 420 ~rpqYykLIE 429 (1102)
T KOG1924|consen 420 IRPQYYKLIE 429 (1102)
T ss_pred hhHHHHHHHH
Confidence 3456666554
No 401
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.47 E-value=3.5 Score=47.84 Aligned_cols=128 Identities=9% Similarity=-0.036 Sum_probs=81.3
Q ss_pred cCCCCcccCCCCCCCc-cCCCCcccccccCCCCchHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHhhhhhhHHH
Q 001064 48 EAGNATSTENGTSLGI-ESGAAAGQELVDGSAMSGEEDRLWNI-VKANSS--------DFSAWTALLEETEKLAQDNIVK 117 (1167)
Q Consensus 48 ~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~l~~~-l~~nP~--------d~~aw~~L~~~~~~~~~~~~~~ 117 (1167)
+..+.+.|.|...++. ++-.-..+.|.. |++++|.+.|... +...|. .--.|..|+-+...+ +.+..
T Consensus 225 ~krevK~vmn~a~~s~~~l~LKsq~eY~~-gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~--~~y~~ 301 (696)
T KOG2471|consen 225 AKREVKHVMNIAQDSSMALLLKSQLEYAH-GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL--GCYQA 301 (696)
T ss_pred HHHhhhhhhhhcCCCcHHHHHHHHHHHHh-cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh--hhHHH
Confidence 3344555555444332 222222233333 6677776654321 122222 223466666665554 56777
Q ss_pred HHHHHHHHHHh-----------CC-------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 118 IRRVYDAFLAE-----------FP-------LCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 118 ar~~ye~~l~~-----------~P-------~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
+..+|.++|.- -| ....+.+..+-.+...|+.-.|.++|.+++..+..++.||+..+...+
T Consensus 302 ~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 302 SSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 77888888851 11 234677788888999999999999999999999999999999999877
No 402
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.35 E-value=0.09 Score=62.41 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=55.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..++||||+...++.+-++.+...||.|.++.. .. |||++|..+.....|+.. ....++|..+.+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr---~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR---DK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhh---hh-------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 478999999999999999999999999987532 21 999999999999889877 6778888776553
No 403
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.25 E-value=22 Score=41.94 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc--ChHHHHHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAARFK 433 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~--~~~l~~~~a~~~ 433 (1167)
.+..++..+..+ ..+....+++|.+..|-++..+-..++.++++ ++...+...|.+|+..+-|+ +..+.-.|+.+-
T Consensus 101 al~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~ 178 (711)
T COG1747 101 ALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLP 178 (711)
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 455666666655 66778889999999998888888899998887 78888999999998877653 344444555554
Q ss_pred HH-cCCHHHHHHHHHHHhhhcCCChHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 434 EQ-NGDIDGARAAYQLVHTETSPGLLEAIIKHA-NMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 434 e~-~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a-~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+- ..+.+.-..+..++...+.-+...+.+... .-+....|+++|+.++...++++.
T Consensus 179 ~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 179 ELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDE 236 (711)
T ss_pred HhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcc
Confidence 43 345666666666654444444555555555 334455789999999998888774
No 404
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.19 E-value=0.17 Score=36.31 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTY 165 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 165 (1167)
.+|..++.++...|++++|.+.|+++++..|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777788888888888888888888877663
No 405
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.17 E-value=0.78 Score=41.64 Aligned_cols=75 Identities=19% Similarity=0.101 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 82 EEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC--YGYWKKYADHEARVGSMDKVVEVYER 158 (1167)
Q Consensus 82 a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~--~~~W~~~a~~e~~~~~~e~A~~l~er 158 (1167)
.+..+++.++.||.|.++.+.|+..+.. .|+++.|...+-.++..+++. ...-..++++..-.|.-+-...-|+|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~--~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA--AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4566677777777777777777776665 367777777777777666554 34444444444444443333333433
No 406
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.12 E-value=2.2 Score=51.62 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=115.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChH---HHHHHHHH----HH---HcCCHHHHHH
Q 001064 375 KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE---IHLFAARF----KE---QNGDIDGARA 444 (1167)
Q Consensus 375 ~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~---l~~~~a~~----~e---~~g~~~~A~~ 444 (1167)
-+|.=+|...| .-..++..++--.||.+.++..+.++.+...-+.+- +.+.|-.+ .- ...+.+.|.+
T Consensus 178 G~f~L~lSlLP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 178 GLFNLVLSLLP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHHhCC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 34455555543 344555565656789999999999987732111121 11111111 11 3557788999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHH-HHHHHHHHHHHHhCCHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPM-LYAQYSRFLHLVSRNAEKARQILV 523 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~-l~~~~a~~~~~~~g~~~~Ar~i~~ 523 (1167)
+++.. ....|+..-..+..+.++...|++++|+.+|++++..... .+-... .+..++..... ..++++|...|.
T Consensus 255 lL~~~-~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~---~~Ql~~l~~~El~w~~~~-~~~w~~A~~~f~ 329 (468)
T PF10300_consen 255 LLEEM-LKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE---WKQLHHLCYFELAWCHMF-QHDWEEAAEYFL 329 (468)
T ss_pred HHHHH-HHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh---HHhHHHHHHHHHHHHHHH-HchHHHHHHHHH
Confidence 99997 6779998888888999999999999999999999953321 111122 23445555444 889999999999
Q ss_pred HHHhhcCCCHHHHHHH-HHhHhhCCCh----hHHHHHHHHHHHHhh
Q 001064 524 DSLDHVQLSKPLLEAL-IHFESIQSSP----KQIDFLEQLVDKFLM 564 (1167)
Q Consensus 524 kal~~~p~~~~l~~~~-~~~e~~~~~~----~~~~~ar~l~eral~ 564 (1167)
+.++...-+..+|.-+ +-.....+.. ...+.+..+|.++-.
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999887777666411 1112222222 223667777777643
No 407
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.00 E-value=0.2 Score=58.05 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=54.1
Q ss_pred ccEEEEecCCCCCCH------HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC-cE
Q 001064 1031 VKSVYVRNLPSTVTA------FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG-RQ 1102 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~------~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g-~~ 1102 (1167)
-..|+|-|+|---.. .-|..+|+++|+|..+-+.+ +. .|.++||.|++|.+..+|+.|++. +|..|+- +.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~-~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPI-DE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeecc-Cc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 367899999853322 24577899999998854433 33 355999999999999999999987 7888764 44
Q ss_pred eEE
Q 001064 1103 VYI 1105 (1167)
Q Consensus 1103 l~V 1105 (1167)
..|
T Consensus 136 f~v 138 (698)
T KOG2314|consen 136 FFV 138 (698)
T ss_pred EEe
Confidence 555
No 408
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.94 E-value=0.2 Score=36.00 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 499 MLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 499 ~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
.+|...|..... .|++++|...|+++|+++|++
T Consensus 2 ~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence 477888888666 999999999999999999973
No 409
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.93 E-value=0.17 Score=35.82 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL 131 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~ 131 (1167)
+++.++..+.+. |+.++|++.|+++++.||+
T Consensus 2 a~~~~a~~~~~~--g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKL--GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHH--CHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHc--cCHHHHHHHHHHHHHHCcC
Confidence 445555555542 4555555555555555554
No 410
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=92.89 E-value=0.49 Score=52.01 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=58.3
Q ss_pred CccEEEEecCCC----CCC-------HHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001064 1030 EVKSVYVRNLPS----TVT-------AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1097 (1167)
Q Consensus 1030 ~~~~l~V~nlp~----~~t-------~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~ 1097 (1167)
..++|.++|+-. ..+ .++|++--++||.|.+|- |.++ .+.|.+-|.|.+.+.|..||+. +|..
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vv--v~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVV--VYDR---HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEE--Eecc---CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 358899999832 233 245566678999999963 4444 3679999999999999999998 7999
Q ss_pred eeCcEeEEEecc
Q 001064 1098 LAGRQVYIEERR 1109 (1167)
Q Consensus 1098 i~g~~l~V~~~r 1109 (1167)
|+||.|..+...
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999877544
No 411
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.86 E-value=6.2 Score=40.77 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc--ChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 372 KVVKLYERCLIACANYPE---YWIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~---~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~--~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
+.....++....++...- .-+.+|..+...+++++|...++-++...... ..-+-+.+++++.+.|.+|+|++++
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444455555555444332 34555666677899999999999888642111 1234456789999999999999998
Q ss_pred HHHhhhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 447 QLVHTETSPGLL-EAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 447 ~~a~~~~~P~~~-~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+.. . .++.. .+-...++++...|+-++|+.-|++|++...
T Consensus 150 ~t~-~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 150 DTI-K--EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred hcc-c--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 875 1 22222 2345678899999999999999999999863
No 412
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.71 E-value=0.094 Score=57.88 Aligned_cols=87 Identities=20% Similarity=0.139 Sum_probs=65.2
Q ss_pred HcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001064 400 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFS 479 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~ 479 (1167)
..|.++.|+..|.++|++. |....+|-..+....+.++...|+.-|..+ ++++|+...-|......++-+|+++++..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A-~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFA-IEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhh-hccCcccccccchhhHHHHHhhchHHHHH
Confidence 3567788888888888776 666677777777777777777888888877 67788877776666666667788888888
Q ss_pred HHHHHHHhh
Q 001064 480 LYEQAIAIE 488 (1167)
Q Consensus 480 ~~~kAl~~~ 488 (1167)
.|+.+++++
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 877777765
No 413
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.63 E-value=0.34 Score=52.47 Aligned_cols=63 Identities=10% Similarity=0.073 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001064 112 QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC 174 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya 174 (1167)
+|+.++|.++|+.+|++.|+++++.+.++.+....+++-.|-.+|-++|.+.|.+.+...+-.
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 478899999999999999999999999999988888899999999999999998877665543
No 414
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.56 E-value=0.28 Score=34.68 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 135 YWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 135 ~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
+++.++.++.+.|++++|+++|++++..+|+|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57888999999999999999999999999975
No 415
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.46 E-value=0.2 Score=57.98 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001064 401 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 480 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~ 480 (1167)
.+.++.|...|.+||++. |++..++-..+....+.+++..|+.-+.++ ++++|.....|++.+....+++.+.+|...
T Consensus 17 ~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~ka-ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKA-IELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhh-hhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 356777777777777766 677777766666666777777777777776 677888888888888888888888888888
Q ss_pred HHHHHHhhhCC
Q 001064 481 YEQAIAIEKGK 491 (1167)
Q Consensus 481 ~~kAl~~~~~~ 491 (1167)
|++.....|++
T Consensus 95 l~~~~~l~Pnd 105 (476)
T KOG0376|consen 95 LEKVKKLAPND 105 (476)
T ss_pred HHHhhhcCcCc
Confidence 88888777643
No 416
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.40 E-value=0.5 Score=57.02 Aligned_cols=6 Identities=17% Similarity=0.623 Sum_probs=2.8
Q ss_pred cEEEEe
Q 001064 1032 KSVYVR 1037 (1167)
Q Consensus 1032 ~~l~V~ 1037 (1167)
...||+
T Consensus 642 ~cFWvk 647 (1102)
T KOG1924|consen 642 NCFWVK 647 (1102)
T ss_pred cceeee
Confidence 344554
No 417
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=92.29 E-value=1.7 Score=41.94 Aligned_cols=111 Identities=10% Similarity=0.122 Sum_probs=63.6
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc--ceeEeeeeccccCCCceEEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSLGSWNGGVLVMVS 799 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~--~~~i~~~d~q~~~~~~i~v~v~ 799 (1167)
...+..|+..++ .+++.|..+|.+++.+....|....|...|.+..+.+...... .+.++.....-..++..++.+.
T Consensus 7 ~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~~~~ 86 (128)
T TIGR02246 7 RALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIVHAI 86 (128)
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEEEEE
Confidence 467889999988 5899999999999877644555445555554433333332222 2344333333222233444333
Q ss_pred EEEEecCccc---cceeEEEEEEeeeCCeEEEEcceE
Q 001064 800 GSVKTKEFCR---RRKFVQTFFLAPQEKGYFVLNDIF 833 (1167)
Q Consensus 800 G~~~~~~~~~---~~~F~q~F~L~~~~~~y~v~nd~f 833 (1167)
..+...+... .....-+|++...+++|.|..|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~t~~~~~~~g~W~I~~~h~ 123 (128)
T TIGR02246 87 QTITAPGKGRARPDAAVRLTFVAVKRDGRWLLAADHN 123 (128)
T ss_pred EEEEcCCCCCCCCCcceEEEEEEEeeCCeEEEEeccC
Confidence 3344433211 123455667778889999998865
No 418
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.29 E-value=0.039 Score=66.03 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 400 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~ 400 (1167)
+...++|+.+. .|..--+..+.-....|..+++..-+.+++|.+
T Consensus 60 Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 60 AINAQLDLCED-EDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQ 103 (556)
T ss_dssp HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHH
T ss_pred HHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHH
Confidence 34445555432 222211223333344466666666777776655
No 419
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=92.28 E-value=0.3 Score=57.59 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCCceeeeEeee--cCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1046 FEIEEEFQNFGRIKPDGVFVR--NRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1046 ~~l~~~F~~~G~i~~v~i~~~--~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++.-+++||.|++|.|... +....-+-|..||+|.+.+++++|.+. .|..|+||.|...+-
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 456777789999999765332 122233457789999999999999988 799999999887653
No 420
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.97 E-value=40 Score=41.91 Aligned_cols=76 Identities=8% Similarity=0.054 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 001064 138 KYADHEARVGSMDKVVEVYERAVQGVTY--SVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYE 215 (1167)
Q Consensus 138 ~~a~~e~~~~~~e~A~~l~eraL~~~P~--s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e 215 (1167)
..++|.++.+.|++|..+-+..-...|. -.++|..|+..++ ..++++.|-...-+.+. . ....|.....-.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl-~~~~y~~Aas~~p~m~g---n---~~~eWe~~V~~f 433 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLL-FEGKYDEAASLCPKMLG---N---NAAEWELWVFKF 433 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHH-hcchHHHHHhhhHHHhc---c---hHHHHHHHHHHh
Confidence 3577888889999998876554444332 3579999999998 77899888877766664 3 245677666655
Q ss_pred HHhhh
Q 001064 216 YMQQE 220 (1167)
Q Consensus 216 ~~~~~ 220 (1167)
.+.++
T Consensus 434 ~e~~~ 438 (846)
T KOG2066|consen 434 AELDQ 438 (846)
T ss_pred ccccc
Confidence 55444
No 421
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.96 E-value=0.39 Score=52.01 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=31.7
Q ss_pred HcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH
Q 001064 400 ASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII 462 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~ 462 (1167)
+.|+.++|..+|+.|+.+. |.++++.+.++.|.+..+++-+|..+|-++ +.+.|.+.+++.
T Consensus 128 ~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A-LtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKA-LTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhhee-eeeCCCchHHHh
Confidence 3455555555555555544 455555555555555555555555555555 445555554443
No 422
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.90 E-value=0.18 Score=55.61 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=59.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCC-ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
...|-+++||+.++.++|-++|+.|.. |+.-+|.+.-+..|+..|-|||+|.+.+++..|... +...+.+|.|.|...
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 367889999999999999999998864 443122222344588999999999999999998877 445556788888644
No 423
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.89 E-value=0.1 Score=57.61 Aligned_cols=115 Identities=12% Similarity=-0.017 Sum_probs=73.5
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH--HHHHHHHHHHhhcCCHHHHH
Q 001064 111 AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD--IWLHYCIFAINTYGDPETIR 188 (1167)
Q Consensus 111 ~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~--lw~~ya~~~~~~~~~~~~Ar 188 (1167)
.+|.++.|+..|-+++.+.|....++.+-+.+.++.+....|++=|..++.++|++.. -|..|+.-+ +|+.++++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl---lg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL---LGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH---hhchHHHH
Confidence 3567777778888888888877777777777777777777788778888877776533 344444443 36777777
Q ss_pred HHHHHHHHhcCCCCC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 189 RLFERGLAYVGTDYL-SFPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 189 ~~feral~~~g~d~~-s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
..|..+++ .|+. ...-|..= ..-..+.++.=++.|+|.++
T Consensus 203 ~dl~~a~k---ld~dE~~~a~lKe--V~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACK---LDYDEANSATLKE--VFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHh---ccccHHHHHHHHH--hccchhhhhhchhHHHHHHH
Confidence 77777776 3332 12233332 22334455555666666655
No 424
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.84 E-value=0.27 Score=36.04 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001064 135 YWKKYADHEARVGSMDKVVEVYERAVQG 162 (1167)
Q Consensus 135 ~W~~~a~~e~~~~~~e~A~~l~eraL~~ 162 (1167)
.|..++.++.+.|++++|+++|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999997654
No 425
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=1.9 Score=49.30 Aligned_cols=140 Identities=13% Similarity=0.103 Sum_probs=105.4
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CC---HHHHH
Q 001064 78 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARV-GS---MDKVV 153 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~-~~---~e~A~ 153 (1167)
-++.++.....+|+.||+++.+|....-.+++....++..=.++.+++|+.+|-|+..|..---+..+. .. ..+=.
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 578899999999999999999999999999876556688888999999999999999885433222221 11 34456
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhh-----cC---CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINT-----YG---DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 218 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~-----~~---~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~ 218 (1167)
+...+++..++.|...|.+-..++... .| ..+....-+++....+=+|+.+...|.- ..|++..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY-~rWLl~~ 241 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY-HRWLLGR 241 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee-hHHhhcc
Confidence 778888888888999997665555421 23 2556677788888877788888788876 5566654
No 426
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.71 E-value=0.051 Score=65.14 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=7.7
Q ss_pred HhHHHHHHHHhhh
Q 001064 722 GSYFVGQYYQVLQ 734 (1167)
Q Consensus 722 g~~Fv~~YY~~l~ 734 (1167)
+..++...|++|-
T Consensus 304 ~~~~L~~i~~~L~ 316 (556)
T PF05918_consen 304 ARQLLPSIFQLLK 316 (556)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666666653
No 427
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.68 E-value=11 Score=39.01 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH--H--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPGLL--E--AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~--~--~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
+..|..+...+++++|...++.++ . .|.+. . +-++++.+...+|.+|+|..+++..-... -.+.+..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l-~-~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-------w~~~~~e 163 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQAL-A-QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-------WAAIVAE 163 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH-c-cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-------HHHHHHH
Confidence 345666778899999999999873 2 33322 2 24677777888899999988876433221 1123344
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
--++++.. .|+.++||+-|++|++..+++
T Consensus 164 lrGDill~-kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 164 LRGDILLA-KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HhhhHHHH-cCchHHHHHHHHHHHHccCCh
Confidence 55788765 999999999999999987443
No 428
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.53 E-value=1.2 Score=51.39 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=90.2
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--
Q 001064 420 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK-- 489 (1167)
Q Consensus 420 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--------~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~-- 489 (1167)
.+.+...+..+.++...|++.+|.+++...-+...|+ .+..|..++-+..++|.+.-+..+|.+||....
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 4677788888999999999999999988764444454 334578888888899999999999999996211
Q ss_pred ---C----CC---ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001064 490 ---G----KE---HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 541 (1167)
Q Consensus 490 ---~----~~---~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~ 541 (1167)
+ +- .....-+|..+.+-.+. ..|+...|...|.++.+.+-.++.+|..++.
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 00 00111235555665544 4999999999999999999999999987664
No 429
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=91.28 E-value=1.1 Score=42.77 Aligned_cols=111 Identities=9% Similarity=0.092 Sum_probs=67.4
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcC-CcccchhchHHHHHHHhc-CCCcceeEeeeeccccCCCceEEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDG-DSTESASSMLDIHSLVIS-LNFTAIEIKTINSLGSWNGGVLVMVS 799 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g-~~~~~~~~~~~i~~~~~~-l~~~~~~i~~~d~q~~~~~~i~v~v~ 799 (1167)
..++++|++.+. .+-+.|..+|.++.+++..+. ....|...+.+..+.... ++.-.+.+..+..+.. ++.++|...
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~a~~~~~ 80 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVS-GDVAVVTGE 80 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEEC-CCEEEEEEE
Confidence 367899999887 677999999998866653222 233455555443333222 2211234444555542 344555555
Q ss_pred EEEEe--cCccccceeEEEEEEeeeCCeEEEEcceEE
Q 001064 800 GSVKT--KEFCRRRKFVQTFFLAPQEKGYFVLNDIFH 834 (1167)
Q Consensus 800 G~~~~--~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr 834 (1167)
+.+.. ++......+..||++...+++|-|.+.-+.
T Consensus 81 ~~~~~~~~~~~~~~~~r~t~v~~k~~~~Wki~h~H~S 117 (121)
T PF13474_consen 81 FRLRFRNDGEEIEMRGRATFVFRKEDGGWKIVHIHWS 117 (121)
T ss_dssp EEEEEECTTCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEecCCccceeeEEEEEEEEEECCEEEEEEEEec
Confidence 55543 333345678999999999999999886553
No 430
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.27 E-value=0.3 Score=56.57 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=88.5
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~ 445 (1167)
+.++++.|+.+|-++|..+|++..+|-.-+..+.+.+++..|+.-+.+|++.. |.....|+..|......+.+.+|+..
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHHHH
Confidence 45689999999999999999999999998888888999999999999999987 88889999999999999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHH
Q 001064 446 YQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 446 ~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
|+.. ..+.|+...+.......
T Consensus 95 l~~~-~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 95 LEKV-KKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHh-hhcCcCcHHHHHHHHHH
Confidence 9997 78899988776554433
No 431
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.88 E-value=0.54 Score=33.58 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.+|+..+.++..+|++++|...|++++++.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566666777777777777777777777664
No 432
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.81 E-value=7 Score=41.98 Aligned_cols=194 Identities=16% Similarity=0.201 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhhH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCHH-HHHHHHH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTEL----ENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE-YWIRYVL 396 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~~----~~W~~y~~~~e~~g~~~~a~~~yeral~~~-----p~~~~-~w~~ya~ 396 (1167)
+.++|+..|++.+. +++... .+....+...-+.+++++.+..|.+.|... .++.+ ......+
T Consensus 42 ~p~~Al~sF~kVle--------lEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlD 113 (440)
T KOG1464|consen 42 EPKEALSSFQKVLE--------LEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILD 113 (440)
T ss_pred CHHHHHHHHHHHHh--------cccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 56678888888887 543322 233445666667899999988888877542 23433 3333334
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhh-ccChHHHHH----HHHHHHHcCCHHHHHHHHHHHhhhcC-----------CChHHH
Q 001064 397 CMEASGSMDLAHNALARATHVFV-KRLPEIHLF----AARFKEQNGDIDGARAAYQLVHTETS-----------PGLLEA 460 (1167)
Q Consensus 397 ~l~~~g~~e~A~~vl~rA~~~~~-p~~~~l~~~----~a~~~e~~g~~~~A~~~~~~a~~~~~-----------P~~~~~ 460 (1167)
+.....+++-..+.|+..+.... .++..+|+. ++.++...+++.+-.+++.+++.... ...+++
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 44445566666666666655431 346677764 56666667777777777776532211 123456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 461 IIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 461 ~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
|-.-+.++..+.+-.+...+|+++|.+...--|...+..+-..=+.+..+ .|.+++|-.-|=.|++..
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlr-eg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLR-EGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccc-cchHHHHHhHHHHHHhcc
Confidence 66666777778888999999999998763211111111111222333333 778888887777777754
No 433
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=59 Score=41.60 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=58.6
Q ss_pred CCc-hHHHHHHHHHHhCC---CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001064 78 AMS-GEEDRLWNIVKANS---SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 78 ~~~-~a~~~l~~~l~~nP---~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
+++ +-++.|++.+-.|. .+.+.-..|+...-+ -+..+...+.+++=..+-. ..+.+.+..+-+++|.
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik---ad~trVm~YI~rLdnyDa~------~ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK---ADRTRVMEYINRLDNYDAP------DIAEIAIENQLYEEAF 1068 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh---cChHHHHHHHHHhccCCch------hHHHHHhhhhHHHHHH
Confidence 344 44566667665442 222322233333332 1333444444444222211 2355555555566666
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 231 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~ 231 (1167)
.+|.+. ++....++.+++..++.|.|-+.-+|.- .+.+|...+..-+..+....|+.-|-++
T Consensus 1069 ~ifkkf--------~~n~~A~~VLie~i~~ldRA~efAe~~n--------~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1069 AIFKKF--------DMNVSAIQVLIENIGSLDRAYEFAERCN--------EPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHHHh--------cccHHHHHHHHHHhhhHHHHHHHHHhhC--------ChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 666543 1222333444444444444433333222 2356666666666556666666666554
No 434
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.47 E-value=43 Score=39.57 Aligned_cols=182 Identities=14% Similarity=-0.022 Sum_probs=116.2
Q ss_pred CCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHH
Q 001064 347 KPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 426 (1167)
Q Consensus 347 ~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~ 426 (1167)
.|+|..++ ..+++..-.+-...-+..+..|.|.. ..+...++.+++++... ..+.-..+++|.++.+ =+...+-
T Consensus 62 ~~l~d~~l---~~~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ 135 (711)
T COG1747 62 QLLDDSCL---VTLLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIG 135 (711)
T ss_pred ccccchHH---HHHHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHH
Confidence 34665433 34444443444455667788888877 56667788888888766 4566778899888866 5566666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPG-----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 501 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~ 501 (1167)
-.++..+++ ++...+...|.+++-+..|. --++|-+...+ --.+.|....+..+.-.... .....+.
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg-----~~~~~Vl 207 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLG-----EGRGSVL 207 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhc-----cchHHHH
Confidence 778888887 88889999999986555552 33456665543 23456666655554433331 1223344
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 502 AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 502 ~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
.+...-.|....|+++|.+|+.-.|+++-.+.......+.+
T Consensus 208 ~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 208 MQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 44443334556799999999999999987655444444443
No 435
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=90.41 E-value=0.43 Score=53.09 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=57.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEee--ecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEE
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFV--RNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1106 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~--~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~ 1106 (1167)
..|-|.||.+.+|.+++..+|...|.|..+.+.- .+..-....-.|||.|.|..++..|-.+..+.|-|+.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 4889999999999999999999999999876532 12111223347999999999999887775666667766664
No 436
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=90.38 E-value=2.5 Score=46.92 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=62.7
Q ss_pred CccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++.-+.|.+|... +.-+.|-.+|..||.|.+|+. ++.+ .|-|.|++.|..++++|+.. |+..+-|.+|.|..
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkF-mkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKF-MKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEE-eecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 5789999999865 677889999999999999764 4333 37899999999999999987 78888888899887
Q ss_pred ccC
Q 001064 1108 RRP 1110 (1167)
Q Consensus 1108 ~r~ 1110 (1167)
.+.
T Consensus 360 SkQ 362 (494)
T KOG1456|consen 360 SKQ 362 (494)
T ss_pred ccc
Confidence 764
No 437
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=10 Score=45.14 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=95.9
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh----c----------------cChHHHHH---HHHHHHHcCCH
Q 001064 383 ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV----K----------------RLPEIHLF---AARFKEQNGDI 439 (1167)
Q Consensus 383 ~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~----p----------------~~~~l~~~---~a~~~e~~g~~ 439 (1167)
..|.+.+-.+.++.+...+|+.+.|..+.+|++=.+. | .+-.+|+. +-..+.+.|=+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 3478888999999999999999998888888864432 1 12233332 34456677888
Q ss_pred HHHHHHHHHHhhhcCCC-hHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC--CH
Q 001064 440 DGARAAYQLVHTETSPG-LLEAIIKHANM-ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR--NA 515 (1167)
Q Consensus 440 ~~A~~~~~~a~~~~~P~-~~~~~~~~a~~-e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g--~~ 515 (1167)
.-|.+.++-+ +.++|. ++-..+..+++ ..|..+|.=.+.+++..-....- ...+.. ..-..+++|+....- +.
T Consensus 359 rTA~E~cKll-lsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l-~~~PN~-~yS~AlA~f~l~~~~~~~r 435 (665)
T KOG2422|consen 359 RTALEWCKLL-LSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL-SQLPNF-GYSLALARFFLRKNEEDDR 435 (665)
T ss_pred HHHHHHHHHH-hhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH-hhcCCc-hHHHHHHHHHHhcCChhhH
Confidence 8888888776 789998 76665555554 45667777777777655222110 001111 123567777555222 36
Q ss_pred HHHHHHHHHHHhhcCC
Q 001064 516 EKARQILVDSLDHVQL 531 (1167)
Q Consensus 516 ~~Ar~i~~kal~~~p~ 531 (1167)
..|+..+.+|+.++|.
T Consensus 436 qsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 436 QSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHHHHHhCcH
Confidence 8899999999999984
No 438
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=10 Score=42.20 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLC 397 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~-~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~ 397 (1167)
+.-|.+.++|..|+..|.++|+ .++-|++ +.-++.+-+....-.|++..++.-..+++...|.+...+++=|.+
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk-----~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLK-----KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHh-----hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 4456667777777777777776 2333432 222344444444445667777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhh
Q 001064 398 MEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+..+..+.+|.+..+..+.+.
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 766666666666666555443
No 439
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.96 E-value=0.41 Score=50.56 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=61.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C----CCeeeCcEeEEE
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S----PIQLAGRQVYIE 1106 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~----~~~i~g~~l~V~ 1106 (1167)
..|||.||...++-+.+.+.|+.||+|...-+.+.++ +++-+=++|+|...-.+.+|+.. + +....++.+-|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r--~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR--GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc--ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 6899999999999999999999999998754444443 56777889999999888888866 2 456667777777
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
....
T Consensus 110 P~eq 113 (275)
T KOG0115|consen 110 PMEQ 113 (275)
T ss_pred hhhc
Confidence 5543
No 440
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.82 E-value=4.3 Score=43.40 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 458 LEAIIKHANMERRLGNL-------EDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 458 ~~~~~~~a~~e~r~g~~-------e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
+.++++.+.+++.+|+. ..|...|+++++.............+..-+|.+.++ .|++++|.+.|.+.+...-
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr-lg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR-LGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHcCCC
Confidence 34566666777666764 445555666665543211111223455556777666 9999999999999997654
Q ss_pred CCH
Q 001064 531 LSK 533 (1167)
Q Consensus 531 ~~~ 533 (1167)
.+.
T Consensus 197 ~s~ 199 (214)
T PF09986_consen 197 ASK 199 (214)
T ss_pred CCC
Confidence 443
No 441
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.37 E-value=4.4 Score=48.35 Aligned_cols=128 Identities=20% Similarity=0.165 Sum_probs=76.4
Q ss_pred cCChHHHHHHHH--HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 367 DGDFNKVVKLYE--RCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 367 ~g~~~~a~~~ye--ral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
.+|++.++...+ +.+...| .+...+.+.||++.|..+.|+.+- .+++..+. +..+.|+++.|.+
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~~rFe---LAl~lg~L~~A~~ 339 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV---------TDPDHRFE---LALQLGNLDIALE 339 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-HHHHHH---HHHHCT-HHHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc---------CChHHHhH---HHHhcCCHHHHHH
Confidence 467777666554 2221222 456778888899888887776433 23444443 3357899988887
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 524 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~k 524 (1167)
+.+ .-++...|.++++...++|+++-|..+|.++=... .+ .|++...|+.+.-+++-+.
T Consensus 340 ~a~------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~--------------~L-~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 340 IAK------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS--------------GL-LLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HCC------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH--------------HH-HHHHHHCT-HHHHHHHHHH
T ss_pred HHH------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc--------------cc-HHHHHHhCCHHHHHHHHHH
Confidence 633 23367789999999999999999998888764433 11 2234458888887777777
Q ss_pred HHhhc
Q 001064 525 SLDHV 529 (1167)
Q Consensus 525 al~~~ 529 (1167)
|.+..
T Consensus 399 a~~~~ 403 (443)
T PF04053_consen 399 AEERG 403 (443)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 66544
No 442
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.21 E-value=71 Score=40.20 Aligned_cols=179 Identities=13% Similarity=0.132 Sum_probs=98.5
Q ss_pred HHHHHHHHHHH---------HcCChHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHH---
Q 001064 355 ENWHNYLDFIE---------RDGDFNKVVKLYERCLIACA---------NYPEYWIRYVLCMEASGSMDLAHNALAR--- 413 (1167)
Q Consensus 355 ~~W~~y~~~~e---------~~g~~~~a~~~yeral~~~p---------~~~~~w~~ya~~l~~~g~~e~A~~vl~r--- 413 (1167)
..|..++.++. -.+++..+....+.....+. ..+-+++-.|.+....|+.+.|...|.+
T Consensus 353 ~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~ 432 (608)
T PF10345_consen 353 IQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRF 432 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHH
Confidence 46777665542 34788888888877666542 2355777777778888999999999982
Q ss_pred ----HHHhhhccChHHHHHHH----HHHHHcC--CHHH--HHHHHHHHhhhc--CCC--hHHHHHHHHHHHHHc---CCH
Q 001064 414 ----ATHVFVKRLPEIHLFAA----RFKEQNG--DIDG--ARAAYQLVHTET--SPG--LLEAIIKHANMERRL---GNL 474 (1167)
Q Consensus 414 ----A~~~~~p~~~~l~~~~a----~~~e~~g--~~~~--A~~~~~~a~~~~--~P~--~~~~~~~~a~~e~r~---g~~ 474 (1167)
..... ....+++++.+ .++...+ +..+ +..+++++ ... +.. +...|......-... -.+
T Consensus 433 ~~~~~~~~~-~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i-~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 510 (608)
T PF10345_consen 433 LLCEAANRK-SKFRELYILAALNLAIILQYESSRDDSESELNELLEQI-EPLCSNSPNSYNRTAYCLVLATYNTFEPFSS 510 (608)
T ss_pred hhhhhhccC-CcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhc-CccccCCccHHHHHHHHHHHHHHhhCCcccc
Confidence 22222 23445555532 2222222 2222 55666653 111 111 222333332221221 233
Q ss_pred HHHHHHHHHHHHhh-hCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC----HHHHH
Q 001064 475 EDAFSLYEQAIAIE-KGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS----KPLLE 537 (1167)
Q Consensus 475 e~A~~~~~kAl~~~-~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~----~~l~~ 537 (1167)
.++...+..+++.. ..-.. ...-.+...++...+. .|+..+..++..+++..-... ..+|.
T Consensus 511 ne~k~~l~~~L~~~~~~~~n-~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~ 576 (608)
T PF10345_consen 511 NEAKRHLQEALKMANNKLGN-SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH 576 (608)
T ss_pred HHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 58888888888876 22111 1112233445444443 789999888888888755443 35663
No 443
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=89.01 E-value=7.5 Score=46.82 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=57.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
.+.+-+++.+++.+..+++++|... .|.++++ ..++..+...|-++|+|....++++|+..|...+-.|.+.|....
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l-~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDL-SENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccch-hhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 4667788999999999999999633 2444443 223333334689999999999999999998888888888876543
No 444
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.85 E-value=3.8 Score=37.18 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC
Q 001064 119 RRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS 166 (1167)
Q Consensus 119 r~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s 166 (1167)
...+++.++.+|++....+.++..++..|+++.|.+.+-.+++.++..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 456788999999999999999999999999999999999999887544
No 445
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.81 E-value=1 Score=48.18 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1046 FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1046 ~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++++...++||.|..|-|+......-.-----||+|+..+++-+|+-. ||..|+||.++..|
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 466778889999999866554322111223579999999999999866 89999999887654
No 446
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.57 E-value=0.44 Score=58.65 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=62.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~ 1106 (1167)
..+.++||+|+.++....|...|..||.|..|++ +. +--|++|.+++...++.|+.. .|.-|+| +.++|.
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy--~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY--RH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeec--cc-----CCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 5689999999999999999999999999997543 22 335999999999999999976 6888887 558898
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
++.+
T Consensus 527 la~~ 530 (975)
T KOG0112|consen 527 LASP 530 (975)
T ss_pred cccC
Confidence 7763
No 447
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.48 E-value=0.88 Score=33.28 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 460 AIIKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 460 ~~~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
+|..++.++.++|++++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 36778889999999999999999977655
No 448
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.40 E-value=7 Score=43.22 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAY 197 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~ 197 (1167)
....++++.+...++++.+.+.+++.+..+|.+..+|......++ ..|+...|+..|+++-+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence 345667788888899999999999999999999999999999999 789999999999987763
No 449
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.03 E-value=30 Score=37.40 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 001064 113 DNIVKIRRVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQG 162 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~ 162 (1167)
.+.++|.+.|++.|++.+... .+.+..+.+..+++++++..+.|.++|..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 466778888888888877653 34456677778888888888888887754
No 450
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.83 E-value=5.8 Score=41.06 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001064 425 IHLFAARFKEQNGDIDGARAAYQLVHTETSPG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 501 (1167)
Q Consensus 425 l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~---~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~ 501 (1167)
.|..++.++.+.|++++|++.|.++ .+..-. -.++++..+.+..-.+++..+...+.+|-.....-.++.....+-
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3444555555555555555555554 221111 234455555555556666666666666665543211111111121
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 502 AQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 502 ~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
..-|-. ....+++.+|-+.|-.++..+.
T Consensus 117 ~~~gL~-~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLA-NLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHH-HHHhchHHHHHHHHHccCcCCC
Confidence 112222 2247889999888887765543
No 451
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.81 E-value=0.62 Score=48.72 Aligned_cols=54 Identities=19% Similarity=0.416 Sum_probs=26.5
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+.+|.+.|.++|.++ +++.|....-|++.+.+.++.|+++.|...|++.++++|
T Consensus 7 ~~~D~~aaaely~qa-l~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 7 ESGDAEAAAELYNQA-LELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred ccCChHHHHHHHHHH-hhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 344444444455554 444444444455555554455555555555555554444
No 452
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.80 E-value=19 Score=43.15 Aligned_cols=131 Identities=16% Similarity=0.170 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
-...+.|+++.|-.+.|+ .. ..+++.-+.+|. +.|+++.|.++.+. -+++..|-.+++....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL-------~~-~~D~~~rFeLAl---~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELAL-------QF-VTDPDHRFELAL---QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHTT-HHHHH-------HH-SS-HHHHHHHHH---HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHH-------hh-cCChHHHhHHHH---hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHc
Confidence 566778888888666554 44 456777777664 67999988765522 24678999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH
Q 001064 437 GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE 516 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~ 516 (1167)
|+++-|..+|.++ .. |-++..++.-.|+.+...++.+.|..... +-..+..+ + ..|+++
T Consensus 361 g~~~lAe~c~~k~-~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----------~n~af~~~-~-~lgd~~ 419 (443)
T PF04053_consen 361 GNIELAEECYQKA-KD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD----------INIAFQAA-L-LLGDVE 419 (443)
T ss_dssp TBHHHHHHHHHHC-T---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-----------HHHHHHHH-H-HHT-HH
T ss_pred CCHHHHHHHHHhh-cC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC----------HHHHHHHH-H-HcCCHH
Confidence 9999999999996 22 22333455568999888888887776542 11222222 1 278899
Q ss_pred HHHHHHHHH
Q 001064 517 KARQILVDS 525 (1167)
Q Consensus 517 ~Ar~i~~ka 525 (1167)
+..+++.++
T Consensus 420 ~cv~lL~~~ 428 (443)
T PF04053_consen 420 ECVDLLIET 428 (443)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 988888765
No 453
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.44 E-value=0.97 Score=30.67 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTY 165 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 165 (1167)
..|..++..+...++++.|+..|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45777777777778888888888887776653
No 454
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=87.24 E-value=3.1 Score=41.68 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCCceeeeEeee
Q 001064 1046 FEIEEEFQNFGRIKPDGVFVR 1066 (1167)
Q Consensus 1046 ~~l~~~F~~~G~i~~v~i~~~ 1066 (1167)
++|-.+=+-||.|.++.+.|+
T Consensus 89 ~qIGKVDEIfG~i~d~~fsIK 109 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDVHFSIK 109 (215)
T ss_pred hhhcchhhhcccccccEEEEe
Confidence 333333344777777655443
No 455
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=86.66 E-value=2 Score=50.53 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=59.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHh-cCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee---eCcEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQ-NFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL---AGRQV 1103 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i---~g~~l 1103 (1167)
.....|||.||-.-.|.-.|+.++. .+|.|... +| | +-|..|||.|.+.++|.+.+.+ +|+.. |++.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3568999999999999999999998 67777763 45 3 2467899999999999988877 67654 56778
Q ss_pred EEEecc
Q 001064 1104 YIEERR 1109 (1167)
Q Consensus 1104 ~V~~~r 1109 (1167)
.|+|.+
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 888765
No 456
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.00 E-value=1.2e+02 Score=39.16 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 193 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fer 193 (1167)
++++|-..-++. +.+..|-.++....+.+....|++-|-|+ +++.-+..-++... +.|.+++..+.+..
T Consensus 1090 ~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~-~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1090 SLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVAS-RTGKYEDLVKYLLM 1158 (1666)
T ss_pred hHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 444444444433 34567777777777777777777666544 23333444444444 45666666555555
Q ss_pred HHHhcCCCCCCHHHHHHHHH
Q 001064 194 GLAYVGTDYLSFPLWDKYIE 213 (1167)
Q Consensus 194 al~~~g~d~~s~~lw~~y~~ 213 (1167)
|-+..........|...|++
T Consensus 1159 aRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1159 ARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHhhcCccchHHHHHHHHH
Confidence 55544333333445555554
No 457
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.81 E-value=16 Score=38.24 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001064 436 NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 515 (1167)
Q Consensus 436 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 515 (1167)
.|| ++|+..|-++...-.=+.+++.+.+|.++.+. |.++++.+|-++|++....+ ..+|+++..++.+.+. .|++
T Consensus 120 ~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLas~~~~-~~~~ 194 (203)
T PF11207_consen 120 FGD-QEALRRFLQLEGTPELETAELQYALATYYTKR-DPEKTIQLLLRALELSNPDD--NFNPEILKSLASIYQK-LKNY 194 (203)
T ss_pred cCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH-hcch
Confidence 354 67777777652222224678888888888754 78999999999999986542 3458899999999776 8888
Q ss_pred HHHH
Q 001064 516 EKAR 519 (1167)
Q Consensus 516 ~~Ar 519 (1167)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 458
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=85.75 E-value=1.1e+02 Score=38.79 Aligned_cols=102 Identities=11% Similarity=0.099 Sum_probs=76.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 001064 139 YADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTY--GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEY 216 (1167)
Q Consensus 139 ~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~--~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~ 216 (1167)
+...+.+.|++++|..++.++- +..+..-..+.+.++...+ -+..++...-+++-...+.++....-+..|+.|+.
T Consensus 713 LL~sy~~~g~~erA~glwnK~Q--V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~ 790 (1088)
T KOG4318|consen 713 LLQSYLEEGRIERASGLWNKDQ--VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFAT 790 (1088)
T ss_pred HHHHHHhhhHHHHHHhHHhhCc--CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHh
Confidence 4456677888999999999887 3355566667777766332 25567888888888877777677788999999999
Q ss_pred HhhhHHHHHHHHHHHHhc-chhhHHHH
Q 001064 217 MQQEWSRVAMIYTRILEN-PIQQLDRY 242 (1167)
Q Consensus 217 ~~~~~~~A~~iy~r~l~~-p~~~~~~~ 242 (1167)
..++.+.|.++|+|.-+. ++.+.+.+
T Consensus 791 q~~qkkaAkk~f~r~eeq~~v~tad~l 817 (1088)
T KOG4318|consen 791 QTEQKKAAKKCFERLEEQLTVSTADEL 817 (1088)
T ss_pred hHHHHHHHHHHHHHHHHccCCCcHHHH
Confidence 888888999999998875 44444443
No 459
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.47 E-value=4.1 Score=33.90 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=40.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcC----CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNF----GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 1093 (1167)
..|+|.|+. +++.++|+.+|..| ++. .|. ++ |.. -+=|.|.+.+.|.+||.+
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IE-WI-dDt------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIE-WI-DDT------SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEE-Ee-cCC------cEEEEECCHHHHHHHHHc
Confidence 679999996 68889999999988 543 333 34 432 477999999999999864
No 460
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.34 E-value=28 Score=40.56 Aligned_cols=139 Identities=15% Similarity=0.057 Sum_probs=91.4
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------------------------CCCHH---HHHHHHHHHHHc
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--------------------------ANYPE---YWIRYVLCMEAS 401 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~--------------------------p~~~~---~w~~ya~~l~~~ 401 (1167)
|-.++........+..+|+...|..+.||||-.+ +.+-. +.++|+..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 3346677788888888888776555555554321 01112 556777888889
Q ss_pred CCHHHHHHHHHHHHHhhhccChHHHHHHHH-HHHHcCCHHHHHHHHHHHhhhcCCC----hHHHHHHHHHHHHHcCCH--
Q 001064 402 GSMDLAHNALARATHVFVKRLPEIHLFAAR-FKEQNGDIDGARAAYQLVHTETSPG----LLEAIIKHANMERRLGNL-- 474 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~-~~e~~g~~~~A~~~~~~a~~~~~P~----~~~~~~~~a~~e~r~g~~-- 474 (1167)
|-+..|.++.+-.+.+.+..+|---+.+.+ +..+.++++=-+.+++........+ .+.+-+..+.....+++-
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~ 196 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEES 196 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccc
Confidence 999999999999999885546654444444 4456788887777777642211111 112345555555566666
Q ss_pred -------------HHHHHHHHHHHHhhh
Q 001064 475 -------------EDAFSLYEQAIAIEK 489 (1167)
Q Consensus 475 -------------e~A~~~~~kAl~~~~ 489 (1167)
+.|...+.+|+..+|
T Consensus 197 ~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 197 SQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred cccccccccccchhHHHHHHHHHHHHhH
Confidence 899999999999985
No 461
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.31 E-value=3.4 Score=45.87 Aligned_cols=92 Identities=14% Similarity=0.045 Sum_probs=62.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhcc---ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC
Q 001064 396 LCMEASGSMDLAHNALARATHVFVKR---LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG 472 (1167)
Q Consensus 396 ~~l~~~g~~e~A~~vl~rA~~~~~p~---~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g 472 (1167)
..+.+..++..|+..|.++|+...++ +..+|...|....-.|++-.|+.-..++ +.++|.+...+++-+.....+.
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a-l~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA-LKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhhhhhhHHHHHHH
Confidence 33334445555666666666544322 2344555555556677888888888887 7889999999998888888888
Q ss_pred CHHHHHHHHHHHHHhh
Q 001064 473 NLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 473 ~~e~A~~~~~kAl~~~ 488 (1167)
.++.|....+..+.+.
T Consensus 168 ~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 168 RFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHhhhhhhh
Confidence 8888888777776654
No 462
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=84.92 E-value=1.3 Score=46.54 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=47.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR 421 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~ 421 (1167)
.+.+|.+.+..+|.|+|..-|....-|++++.+.++.|+++.|...|++.+++.+++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 356788888889999998888888889999988888899998888898888887544
No 463
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.75 E-value=33 Score=41.17 Aligned_cols=142 Identities=12% Similarity=0.028 Sum_probs=89.3
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--------h------------cCCChH---HHHHHHHHHHHHcCCHHH
Q 001064 420 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHT--------E------------TSPGLL---EAIIKHANMERRLGNLED 476 (1167)
Q Consensus 420 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~--------~------------~~P~~~---~~~~~~a~~e~r~g~~e~ 476 (1167)
|-...-.++.+++-..+|+.+-|..+.+|++- . +.|.|- .+.++++..+.+.|-...
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 44566778889999999999998888887521 0 122222 235777888889999999
Q ss_pred HHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----HhhcCCCHHHHHHHHHhHhhCCChhH
Q 001064 477 AFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS-----LDHVQLSKPLLEALIHFESIQSSPKQ 551 (1167)
Q Consensus 477 A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ka-----l~~~p~~~~l~~~~~~~e~~~~~~~~ 551 (1167)
|.+..+-.++++|..+ |.....+.+++.....+|.=-+.+++.. |...|+ ..+-.+++.|-+...++..
T Consensus 361 A~E~cKlllsLdp~eD-----Pl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l~~~~~~~ 434 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSED-----PLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFLRKNEEDD 434 (665)
T ss_pred HHHHHHHHhhcCCcCC-----chhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHHhcCChhh
Confidence 9999999999987532 3333334444333344555555555544 233343 2333467777777655443
Q ss_pred HHHHHHHHHHHhhcCC
Q 001064 552 IDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 552 ~~~ar~l~eral~~~~ 567 (1167)
...++.++.+|+...|
T Consensus 435 rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 435 RQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 4556667777766554
No 464
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.27 E-value=4.6 Score=44.06 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHhCCCCHHHH----------------HHHHHHHHHhCCHHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAF-LAEFPLCYGYW----------------KKYADHEARVGSMDKVVEVYER 158 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~-l~~~P~~~~~W----------------~~~a~~e~~~~~~e~A~~l~er 158 (1167)
|+.-|..+++-..... ..+++++++.... =..+|...-.| .+.+..+...|.+.+|.++.+|
T Consensus 226 Dv~e~es~~rqi~~in-ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 226 DVQEYESLARQIEAIN-LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred cHHHHHHHhhhhhccc-cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6777777777665532 4445544433332 12224433333 2345566677888888888888
Q ss_pred HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001064 159 AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 193 (1167)
Q Consensus 159 aL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fer 193 (1167)
+|..+|.+...|..+.+.+. ..||-=.+...|+|
T Consensus 305 ~ltldpL~e~~nk~lm~~la-~~gD~is~~khyer 338 (361)
T COG3947 305 ALTLDPLSEQDNKGLMASLA-TLGDEISAIKHYER 338 (361)
T ss_pred HhhcChhhhHHHHHHHHHHH-HhccchhhhhHHHH
Confidence 88888888888888887777 56664445455444
No 465
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.75 E-value=19 Score=40.03 Aligned_cols=118 Identities=11% Similarity=0.113 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHhhcC----
Q 001064 112 QDNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARVGSMDKVVEVYERAVQGV---TYSVDIWLHYCIFAINTYG---- 182 (1167)
Q Consensus 112 ~~~~~~ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~---P~s~~lw~~ya~~~~~~~~---- 182 (1167)
+.++++.-+..+.+-+-.-. -.++|++.++.+.+.++.+.|.+.|.+..... ....|+.++.+++-+ ..+
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlgl-fy~D~~l 159 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGL-FYLDHDL 159 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH-hhccHHH
Confidence 45566666666666665322 24899999999999999999988887766532 356677666666554 333
Q ss_pred ---CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001064 183 ---DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 183 ---~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
.+++|..++|++=++.-. .++-.-++-|-....+++.|..+|...+..
T Consensus 160 V~~~iekak~liE~GgDWeRr----NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 160 VTESIEKAKSLIEEGGDWERR----NRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHHhCCChhhh----hhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 456666666665543322 255555666666777888888888777654
No 466
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=83.72 E-value=1.6 Score=51.07 Aligned_cols=11 Identities=0% Similarity=0.139 Sum_probs=5.5
Q ss_pred CHHHHHHHHHh
Q 001064 1083 DISGVQNAIQA 1093 (1167)
Q Consensus 1083 ~~~~a~~Al~~ 1093 (1167)
+.+.++.+...
T Consensus 301 ~~~~l~~~Fk~ 311 (419)
T KOG0116|consen 301 TPAELEEVFKQ 311 (419)
T ss_pred CHHHHHHHHhh
Confidence 44555555444
No 467
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=83.17 E-value=1.2 Score=49.97 Aligned_cols=71 Identities=27% Similarity=0.398 Sum_probs=53.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C-CCeeeCcEeEEEecc
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S-PIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~-~~~i~g~~l~V~~~r 1109 (1167)
..+|+|||.+.++..+|+.+|...----+-.+++ ..||+||+..+..-+.+|++. + ...+.|+++.|+..-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 3689999999999999999997431111111233 237999999999999999988 4 577899999987543
No 468
>PRK10941 hypothetical protein; Provisional
Probab=83.08 E-value=8 Score=42.84 Aligned_cols=71 Identities=11% Similarity=0.010 Sum_probs=49.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 363 FIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 363 ~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
.+.+.+++++|+.+.++++...|.++.-|..-+.++.+.|....|+.-|+.-++.+ |+.+..-+....+..
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-PEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-CCchhHHHHHHHHHH
Confidence 33566777777777777777777777777777777777777777777777777766 666665555544443
No 469
>PRK10941 hypothetical protein; Provisional
Probab=82.21 E-value=14 Score=40.87 Aligned_cols=69 Identities=14% Similarity=-0.041 Sum_probs=58.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001064 397 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 397 ~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
.+...++++.|+.+.++.+.+. |+++.-|.-.+.++.+.|.+..|+.-|+.- ++..|+++.+-+-...+
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~f-l~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYF-VEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHhCCCchhHHHHHHHH
Confidence 4567899999999999999987 899999999999999999999999999996 78899988765444333
No 470
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=82.08 E-value=72 Score=35.05 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHhhcCCHHHHHHHHHH---HHHhcCCCCC-CH
Q 001064 133 YGYWKKYADHEARVGSMDKVVEVYERAVQGV---TYSVDIWLHYCIFAINTYGDPETIRRLFER---GLAYVGTDYL-SF 205 (1167)
Q Consensus 133 ~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~---P~s~~lw~~ya~~~~~~~~~~~~Ar~~fer---al~~~g~d~~-s~ 205 (1167)
.++|++.++.|.+.++.+.+.+.+.+.+... ...+|+.++.+++-+ ..++..-+.+.+|. .+.. |-|.. ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~-~y~d~~vV~e~lE~~~~~iEk-GgDWeRrN 192 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGL-IYGDRKVVEESLEVADDIIEK-GGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHH-hhccHHHHHHHHHHHHHHHHh-CCCHHhhh
Confidence 4799999999999999999888888777643 356788888877766 55664333333332 2332 22322 12
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Q 001064 206 PLWDKYIEYEYMQQEWSRVAMIYTRILEN 234 (1167)
Q Consensus 206 ~lw~~y~~~e~~~~~~~~A~~iy~r~l~~ 234 (1167)
++-.-++-|.....+++.|..++-.+|..
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 34444455555666777777776666543
No 471
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=81.38 E-value=5.3 Score=38.66 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=51.4
Q ss_pred CCCccEEEEecCCCCCCH-HHHH---HHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEe
Q 001064 1028 EGEVKSVYVRNLPSTVTA-FEIE---EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQV 1103 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~-~~l~---~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l 1103 (1167)
|.+-.+|.|+-|..++.. +|++ ..++.||+|.+|.. . ++--|.|.|.|..+|=+|+.+.+...-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~--c------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL--C------GRQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee--c------CCceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 445678888877666532 4444 45679999999753 2 3447999999999999999886556666666
Q ss_pred EEEe
Q 001064 1104 YIEE 1107 (1167)
Q Consensus 1104 ~V~~ 1107 (1167)
...+
T Consensus 155 qCsW 158 (166)
T PF15023_consen 155 QCSW 158 (166)
T ss_pred Eeec
Confidence 6654
No 472
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=81.34 E-value=0.56 Score=57.72 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=58.5
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
+....++||+|||+..+++.+|+..|..+|.|.+|+|..... +..--|+||.|.+.+.+-.|... .+..|+...+++
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~--~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI--KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC--CcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 344678999999999999999999999999999987644333 34456999999998888887755 455544333443
No 473
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=81.20 E-value=5.8 Score=36.43 Aligned_cols=100 Identities=13% Similarity=0.058 Sum_probs=60.4
Q ss_pred HHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcC--CCcceeEeeeeccccCCCceEEEEEE
Q 001064 724 YFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISL--NFTAIEIKTINSLGSWNGGVLVMVSG 800 (1167)
Q Consensus 724 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l--~~~~~~i~~~d~q~~~~~~i~v~v~G 800 (1167)
+.+++|...++ .+++.|.++|.++.++++.+|... +.+++.+.+..- .....++..+..+.. ++..++....
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g~~~----~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~~~~ 77 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGGTIL----GKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVRGRW 77 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTSEEE----EHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCCCEe----CHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEEEEE
Confidence 46778888876 569999999999877775444432 334445555542 223345555555666 4455555556
Q ss_pred EEEecCcc--ccceeEEEEEEeeeCCeEEE
Q 001064 801 SVKTKEFC--RRRKFVQTFFLAPQEKGYFV 828 (1167)
Q Consensus 801 ~~~~~~~~--~~~~F~q~F~L~~~~~~y~v 828 (1167)
.++..... ....+.-+.++..++++|-|
T Consensus 78 ~~~~~~~g~~~~~~~~~~~v~~k~~g~W~i 107 (107)
T PF14534_consen 78 TFTWRGDGEPVTIRGRFTSVWKKQDGKWRI 107 (107)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEETTEEEE
T ss_pred EEEEecCCceEEEEEEEEEEEEEeCCEEEC
Confidence 66654322 12445666666667888765
No 474
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.08 E-value=23 Score=40.80 Aligned_cols=103 Identities=16% Similarity=0.262 Sum_probs=73.4
Q ss_pred CCCCch-HHHHHHHHHHhCCCCHHHHHHHHHHHH-hh---------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001064 76 GSAMSG-EEDRLWNIVKANSSDFSAWTALLEETE-KL---------AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA 144 (1167)
Q Consensus 76 ~~~~~~-a~~~l~~~l~~nP~d~~aw~~L~~~~~-~~---------~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~ 144 (1167)
.+.++. .++.-.+.++.||+-+..|..=-..++ .+ .+.-++.-.++.+.+|..+|+++.+|....-+..
T Consensus 41 ~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~ 120 (421)
T KOG0529|consen 41 AKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQ 120 (421)
T ss_pred ccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 355554 456666888999999999982211111 11 0123455567888899999999999999888887
Q ss_pred HhC--CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Q 001064 145 RVG--SMDKVVEVYERAVQGVTYSVDIWLHYCIFAIN 179 (1167)
Q Consensus 145 ~~~--~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~ 179 (1167)
+.. ++.+=.++++++|+.+|.|-..| +|-+|+.+
T Consensus 121 ~~p~~~~~~EL~lcek~L~~D~RNfh~W-~YRRfV~~ 156 (421)
T KOG0529|consen 121 KNPHSDWNTELQLCEKALKQDPRNFHAW-HYRRFVVE 156 (421)
T ss_pred hCCCchHHHHHHHHHHHHhcCcccccch-HHHHHHHH
Confidence 654 46778889999999999998888 56677664
No 475
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=81.08 E-value=4.4 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=10.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCc
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRI 1058 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i 1058 (1167)
..|+.-++|.+ +.++....|..
T Consensus 315 ~~VI~~~~P~~-----~~~yvqR~GRa 336 (456)
T PRK10590 315 PHVVNYELPNV-----PEDYVHRIGRT 336 (456)
T ss_pred CEEEEeCCCCC-----HHHhhhhcccc
Confidence 45555556543 22344455543
No 476
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.54 E-value=8.3 Score=45.81 Aligned_cols=92 Identities=16% Similarity=0.076 Sum_probs=57.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 001064 398 MEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA 477 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A 477 (1167)
....|+...|.+++.+|+-..|-..---...+|.++...|....|..++.++ +.++-..+..++..+++..-+.+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~-l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA-LAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH-HhhcccCchHHHhcchhHHHHhhhHHH
Confidence 3346777777777777765543222223345566666666666677777766 445544455566666666667777777
Q ss_pred HHHHHHHHHhhhC
Q 001064 478 FSLYEQAIAIEKG 490 (1167)
Q Consensus 478 ~~~~~kAl~~~~~ 490 (1167)
++.|+.|++..++
T Consensus 696 ~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 696 LEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHhcCCC
Confidence 7777777777654
No 477
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.25 E-value=1.2e+02 Score=37.62 Aligned_cols=214 Identities=19% Similarity=0.210 Sum_probs=125.6
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDFNKVVKLYERCLIACANYPEYWIRYVLCMEA--- 400 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~---g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~--- 400 (1167)
++..|...|.++-. ++. .+.-..++.+++.. .++.+|..+|.+|... .+.+..++++.++..
T Consensus 308 d~~~A~~~~~~aA~--------~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 308 DYEKALKLYTKAAE--------LGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLG 375 (552)
T ss_pred cHHHHHHHHHHHHh--------cCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCC
Confidence 45566667777765 332 23344444444332 3677999999999877 457777888877654
Q ss_pred -cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH-HcCCHHHHHHHHHHHhhhcCCChH---HHHHHHHH---HHHH--
Q 001064 401 -SGSMDLAHNALARATHVFVKRLPEIHLFAARFKE-QNGDIDGARAAYQLVHTETSPGLL---EAIIKHAN---MERR-- 470 (1167)
Q Consensus 401 -~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e-~~g~~~~A~~~~~~a~~~~~P~~~---~~~~~~a~---~e~r-- 470 (1167)
.-+.+.|...|.++.+.. .+......+.+++ -.+.++.+...+... .++--... ..++.... +..+
T Consensus 376 v~r~~~~A~~~~k~aA~~g---~~~A~~~~~~~~~~g~~~~~~~~~~~~~~-a~~g~~~~q~~a~~l~~~~~~~~~~~~~ 451 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG---NPSAAYLLGAFYEYGVGRYDTALALYLYL-AELGYEVAQSNAAYLLDQSEEDLFSRGV 451 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc---ChhhHHHHHHHHHHccccccHHHHHHHHH-HHhhhhHHhhHHHHHHHhcccccccccc
Confidence 126789999999998854 4443333333332 236666665555432 22211111 11221111 0001
Q ss_pred cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCC
Q 001064 471 LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS 547 (1167)
Q Consensus 471 ~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~ 547 (1167)
..+.+.+...+.++...-. +.....++++.+.- ..+++.|-..|.+|.+.. ...+|..=-..|.+.+
T Consensus 452 ~~~~~~~~~~~~~a~~~g~--------~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g 521 (552)
T KOG1550|consen 452 ISTLERAFSLYSRAAAQGN--------ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEG 521 (552)
T ss_pred ccchhHHHHHHHHHHhccC--------HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcC
Confidence 1256677777777765542 34555666664432 347899999999998877 5566643334556667
Q ss_pred ChhHHHHHHHHHHHHhhcCC
Q 001064 548 SPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 548 ~~~~~~~ar~l~eral~~~~ 567 (1167)
.+. +..+.+.|+++.....
T Consensus 522 ~~~-~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEEDS 540 (552)
T ss_pred cch-hHHHHHHHHHHHhcCc
Confidence 666 7788888888866543
No 478
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=80.02 E-value=6.1 Score=34.79 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=37.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 1093 (1167)
.-.||. .|......||.++|+.||.|. |.-.+. .-|||...+.+.+..++..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~---VsWi~d------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY---VSWIND------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE---EEEECT------TEEEEEECCCHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE---EEEEcC------CcEEEEeecHHHHHHHHHH
Confidence 334454 999999999999999999985 433343 3799999999999988766
No 479
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.22 E-value=6.4 Score=42.82 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=51.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcE-eEEEe
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQ-VYIEE 1107 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~-l~V~~ 1107 (1167)
..-|-|-++|+.- ...|..+|++||.|.+. +. +..-.+-+|.|.+.-++++||..+|..|+|-. |-|..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkh---v~----~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKH---VT----PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeee---ec----CCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 3556666787653 45677999999999762 21 22335999999999999999999999999875 44544
No 480
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.89 E-value=13 Score=34.05 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=42.3
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccC---chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 469 RRLGNLEDAFSLYEQAIAIEKGKEHSQ---TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~~~~~~~~---~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
.+.|++..|.+.+.+.+.......... ........++.+... .|+.++|...+++|++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 367788888887777777665433222 223345667777665 899999999999999864
No 481
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.83 E-value=99 Score=38.39 Aligned_cols=147 Identities=19% Similarity=0.141 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhh----hccChHHHHHHHHHHHHcC---
Q 001064 370 FNKVVKLYERCLIACANYPEYWIRYVLCMEA-----SGSMDLAHNALARATHVF----VKRLPEIHLFAARFKEQNG--- 437 (1167)
Q Consensus 370 ~~~a~~~yeral~~~p~~~~~w~~ya~~l~~-----~g~~e~A~~vl~rA~~~~----~p~~~~l~~~~a~~~e~~g--- 437 (1167)
...+..+|+.+-.. .+...-..++.++.. ..+.+.|...|+++...+ ....+.....++.++.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 34566666666554 344444555554433 247889999999887621 1113334455666666532
Q ss_pred --CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH--
Q 001064 438 --DIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL-- 510 (1167)
Q Consensus 438 --~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~-- 510 (1167)
+.+.|+.+|.++ .++...+. .+..+.++..- .|+.+|..+|..|...-. ......++.++..
T Consensus 306 ~~d~~~A~~~~~~a-A~~g~~~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--------~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 306 KIDYEKALKLYTKA-AELGNPDA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--------ILAIYRLALCYELGL 374 (552)
T ss_pred cccHHHHHHHHHHH-HhcCCchH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhCC
Confidence 678899999998 44443333 33344433322 467899999999987642 3345556666433
Q ss_pred -HhCCHHHHHHHHHHHHhhc
Q 001064 511 -VSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 511 -~~g~~~~Ar~i~~kal~~~ 529 (1167)
...+.+.|..+|+++.+..
T Consensus 375 gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc
Confidence 1338899999999999887
No 482
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.48 E-value=3.4 Score=27.77 Aligned_cols=31 Identities=6% Similarity=-0.082 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 001064 500 LYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 500 l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
+|..++..+.. .|++++|...|+++++..|.
T Consensus 3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLK-LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence 56677777666 89999999999999988775
No 483
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.76 E-value=8.5 Score=42.60 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=56.1
Q ss_pred hCCCCHHHHHHHHHHHHh---------h-----hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001064 92 ANSSDFSAWTALLEETEK---------L-----AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYE 157 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~---------~-----~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~e 157 (1167)
..+..|+.|....+-+-. + ..++++.+...+++++..+|.+...|..+...+.+.|+...|+..|+
T Consensus 132 ~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 132 LGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHH
Confidence 455668888744332221 0 13677888899999999999999999999999999999999999998
Q ss_pred HHHhc
Q 001064 158 RAVQG 162 (1167)
Q Consensus 158 raL~~ 162 (1167)
++-..
T Consensus 212 ~l~~~ 216 (280)
T COG3629 212 QLKKT 216 (280)
T ss_pred HHHHH
Confidence 87553
No 484
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.75 E-value=7.2 Score=41.80 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=36.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCH
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDI 1084 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~ 1084 (1167)
-...|+|+||+.++...||+..+.+.|.+- ++-...| ++|-||+.|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-----m~iswkg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-----MSISWKG-HFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-----eeEeeec-CCcceeEecCCc
Confidence 446799999999999999999999887652 1212223 467889999875
No 485
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.38 E-value=43 Score=33.84 Aligned_cols=87 Identities=22% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 001064 399 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 478 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~ 478 (1167)
...++.+.+..++.....+. |+.+++-+.-+.++...|++.+|+.+|+.+ .+-.|..+..--.++..+.-+++ ...+
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l-~~~~~~~p~~kALlA~CL~~~~D-~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLREL-EERAPGFPYAKALLALCLYALGD-PSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHH-hccCCCChHHHHHHHHHHHHcCC-hHHH
Confidence 34567777777776554444 888888888888888888888888888886 55556554332222222333444 3444
Q ss_pred HHHHHHHHhh
Q 001064 479 SLYEQAIAIE 488 (1167)
Q Consensus 479 ~~~~kAl~~~ 488 (1167)
.+=..+++..
T Consensus 98 ~~A~evle~~ 107 (160)
T PF09613_consen 98 RYADEVLESG 107 (160)
T ss_pred HHHHHHHhcC
Confidence 4445555544
No 486
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.32 E-value=2.1e+02 Score=36.19 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=64.9
Q ss_pred CcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---
Q 001064 68 AAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA--- 144 (1167)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~--- 144 (1167)
.+...+.. ++++. ...+...+...|. ..+..+..+...+... --.-+..||..+|+.+.....-.+++.
T Consensus 39 ~A~~a~~~-g~~~~-~~~~~~~l~d~pL--~~yl~y~~L~~~l~~~----~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 39 QIKQAWDN-RQMDV-VEQLMPTLKDYPL--YPYLEYRQLTQDLMNQ----PAVQVTNFIRANPTLPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHHHHC-CCHHH-HHHHHHhccCCCc--HhHHHHHHHHhccccC----CHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 34444444 55444 3444455555554 3333444433332111 223678999999998866666555554
Q ss_pred HhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001064 145 RVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERG 194 (1167)
Q Consensus 145 ~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fera 194 (1167)
+.++....+..+ ...|.+..+.+.|+.... ..|+.++|.....++
T Consensus 111 ~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~-~~G~~~~A~~~a~~l 155 (644)
T PRK11619 111 RREDWRGLLAFS----PEKPKPVEARCNYYYAKW-ATGQQQEAWQGAKEL 155 (644)
T ss_pred HccCHHHHHHhc----CCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 445565555422 234788899888888877 567766665554443
No 487
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.37 E-value=38 Score=36.21 Aligned_cols=94 Identities=17% Similarity=0.286 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHHhcC----CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHH
Q 001064 368 GDFNKVVKLYERCLIACA----NY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID 440 (1167)
Q Consensus 368 g~~~~a~~~yeral~~~p----~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~ 440 (1167)
-+++.|+..|.-||.+.- .. ..+++++|=++...|+.+.....+++|+..+
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y---------------------- 148 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFY---------------------- 148 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH----------------------
Confidence 467788888888886621 11 2366666655555666555555555555433
Q ss_pred HHHHHHHHHhh-hcCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 441 GARAAYQLVHT-ETSP----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 441 ~A~~~~~~a~~-~~~P----~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
++++. +-.| +...+.+..+.+.+|+|++++|...|.+.+....
T Consensus 149 ------~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 149 ------EEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred ------HHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 32211 1111 2244667788999999999999999999998764
No 488
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.97 E-value=40 Score=36.67 Aligned_cols=53 Identities=34% Similarity=0.431 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 001064 474 LEDAFSLYEQAIAIEKGKEHSQTLP---MLYAQYSRFLHLVSRNAEKARQILVDSLD 527 (1167)
Q Consensus 474 ~e~A~~~~~kAl~~~~~~~~~~~~~---~l~~~~a~~~~~~~g~~~~Ar~i~~kal~ 527 (1167)
.++|...|++|+...... -.+++| .+..+|+-|+|...|+.++|.++-++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~-L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKE-LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcc-cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 478999999999976532 223444 35688899999889999999999888864
No 489
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=75.95 E-value=0.96 Score=50.02 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=56.0
Q ss_pred ccEEEEecCCCCCCHHHH---HHHHhcCCCceeeeEeeecC--CCcc-cccEEEEEECCHHHHHHHHHh-CCCeeeCcEe
Q 001064 1031 VKSVYVRNLPSTVTAFEI---EEEFQNFGRIKPDGVFVRNR--KDVV-GVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1103 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l---~~~F~~~G~i~~v~i~~~~~--~~g~-~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l 1103 (1167)
..-+||-+|+.....+.+ .+.|.+||.|.+|.+ .++. ..+. +..-++|+|+..+++..||.. .|+.+.|+.+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~-~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVK-NKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEee-cCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 356788888877655544 467889999998643 2222 1111 123479999999999999988 8999999987
Q ss_pred EEEeccC
Q 001064 1104 YIEERRP 1110 (1167)
Q Consensus 1104 ~V~~~r~ 1110 (1167)
+..+..+
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7766554
No 490
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=75.37 E-value=38 Score=41.40 Aligned_cols=141 Identities=12% Similarity=0.050 Sum_probs=82.2
Q ss_pred ccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Q 001064 72 ELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDK 151 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~ 151 (1167)
+|..++++.+|+..+++...--..- ---..-+.+++...+++...+..+|+..+...|.+...--+++.+... ...
T Consensus 318 lLl~~~~l~eal~~~e~~c~~~~~~-lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~ 393 (547)
T PF14929_consen 318 LLLIGGRLKEALNELEKFCISSTCA-LPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYS 393 (547)
T ss_pred EEeccccHHHHHHHHHHhccCCCcc-chHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHH
Confidence 4555577888877776644422221 111122333333333477889999999999999987665555555544 445
Q ss_pred HHHHHH---HHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHH
Q 001064 152 VVEVYE---RAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV------GTDYLSFPLWDKYIEYEYM 217 (1167)
Q Consensus 152 A~~l~e---raL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~------g~d~~s~~lw~~y~~~e~~ 217 (1167)
+.++++ -.|.++ .+..+|..|+...+...++.+.-.+-...+++.+ +.+-.....|.........
T Consensus 394 ~~~Lle~i~~~l~~~-~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~ 467 (547)
T PF14929_consen 394 AEQLLEMIALHLDLV-PSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPK 467 (547)
T ss_pred HHHHHHHHHHHhhcC-CCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhH
Confidence 556665 334555 5679999999988844566654455555554221 1111234566666655443
No 491
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=74.85 E-value=5 Score=41.45 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=45.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhc-CCCc---eeeeEeeecCCCc-ccccEEEEEECCHHHHHHHHHh-CCCeeeCc-
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQN-FGRI---KPDGVFVRNRKDV-VGVCYAFVEFEDISGVQNAIQA-SPIQLAGR- 1101 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i---~~v~i~~~~~~~g-~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~- 1101 (1167)
..+.+|.|++||+++|++++.+.++. +|.. ..+.-.......+ ....-|+|.|.+.+++..-... +|+.|-+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 35689999999999999988776665 5555 2221111111111 1235789999999998887776 78776543
Q ss_pred ----EeEEEec
Q 001064 1102 ----QVYIEER 1108 (1167)
Q Consensus 1102 ----~l~V~~~ 1108 (1167)
...|+++
T Consensus 85 g~~~~~~VE~A 95 (176)
T PF03467_consen 85 GNEYPAVVEFA 95 (176)
T ss_dssp S-EEEEEEEE-
T ss_pred CCCcceeEEEc
Confidence 2456654
No 492
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.77 E-value=24 Score=32.18 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
..++..+.+....|+.++|...+++|+.+....
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346677888888999999999999999987643
No 493
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=73.23 E-value=50 Score=32.38 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=73.1
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVY 156 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~ 156 (1167)
+.....+..|+.+++.++.+.+..+.|+..+.+. +..+....++. ...+++ .-..++++.+.+-++.+.-+|
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~---~~~~ll~~l~~----~~~~yd-~~~~~~~c~~~~l~~~~~~l~ 92 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKY---DPQKEIERLDN----KSNHYD-IEKVGKLCEKAKLYEEAVELY 92 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH---CHHHHHHHHHh----ccccCC-HHHHHHHHHHcCcHHHHHHHH
Confidence 4567778899999999998999999999988763 23344444332 223333 344566677777777777777
Q ss_pred HHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 001064 157 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEY 216 (1167)
Q Consensus 157 eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~ 216 (1167)
.+. ..|...+..++...++++.|.+.+.+.. ...+|...+.+..
T Consensus 93 ~k~--------~~~~~Al~~~l~~~~d~~~a~~~~~~~~--------~~~lw~~~~~~~l 136 (140)
T smart00299 93 KKD--------GNFKDAIVTLIEHLGNYEKAIEYFVKQN--------NPELWAEVLKALL 136 (140)
T ss_pred Hhh--------cCHHHHHHHHHHcccCHHHHHHHHHhCC--------CHHHHHHHHHHHH
Confidence 653 2234445555533366777766665422 3578888877554
No 494
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.74 E-value=5.2e+02 Score=38.60 Aligned_cols=133 Identities=9% Similarity=0.021 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCH---HHHHHHHHHHHHhhhccChHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS-----GSM---DLAHNALARATHVFVKRLPEI 425 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~-----g~~---e~A~~vl~rA~~~~~p~~~~l 425 (1167)
.+....-+.|.++.|+.++|-..|..|+..+-.....|..++.++... +.. ..|..+|-+|+.........=
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk 2891 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARK 2891 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHH
Confidence 344555577888999999999999999999888899999999988753 112 345555656655442222222
Q ss_pred HHHHHHHHH----HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 426 HLFAARFKE----QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 426 ~~~~a~~~e----~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
++....++. ..|.+. +++++-+.++.+-+.-.|+--.......++-+-++.++.+.-+..|
T Consensus 2892 ~iakvLwLls~dda~~~l~---~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yP 2956 (3550)
T KOG0889|consen 2892 LIAKVLWLLSFDDSLGTLG---DVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYP 2956 (3550)
T ss_pred HHHHHHHHHHhccccchHH---HHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHHHHHhch
Confidence 222222222 223222 3444432333332222232222233344556666666666666554
No 495
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.14 E-value=35 Score=40.91 Aligned_cols=116 Identities=14% Similarity=0.043 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh-HHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 001064 373 VVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-EIHLFAARFKEQNGDIDGARAAYQLVHT 451 (1167)
Q Consensus 373 a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~-~l~~~~a~~~e~~g~~~~A~~~~~~a~~ 451 (1167)
...+.-.++..++.+..+....+.|....|+.-+|..++.+|+...++.+. -+.+.+|.++.+.|...+|.-++-.+ +
T Consensus 198 ~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA-~ 276 (886)
T KOG4507|consen 198 IGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAA-L 276 (886)
T ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehh-c
Confidence 344555566666666556655555556689999999999999886654443 35666899999999988888877655 4
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 452 ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 452 ~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.-.|....-++..+.++..++.+......|..+.+..|
T Consensus 277 ~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p 314 (886)
T KOG4507|consen 277 DDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARP 314 (886)
T ss_pred cCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCc
Confidence 44444444456666666667777777777877777665
No 496
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=72.07 E-value=51 Score=42.99 Aligned_cols=109 Identities=12% Similarity=0.251 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHH----hCC-HHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001064 134 GYWKKYADHEAR----VGS-MDKVVEVYERAVQGV------TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 202 (1167)
Q Consensus 134 ~~W~~~a~~e~~----~~~-~e~A~~l~eraL~~~------P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~ 202 (1167)
.-|..|+.+... .+. ....+.+.+||+... ..+..+...|+.+.. .....+++.+|..+... |.-.
T Consensus 35 ~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~--~e~~~d~~d~f~~m~~k-gIg~ 111 (974)
T KOG1166|consen 35 DKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLEL--REELQDAEDFFSYLENK-GIGT 111 (974)
T ss_pred hhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHH--HHHHhhHHHHHHHHHhc-cccc
Confidence 556666666542 122 556777777777644 334454444443222 24467788888877752 2222
Q ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhHHHHHHH
Q 001064 203 LSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRYFSS 245 (1167)
Q Consensus 203 ~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~---p~~~~~~~~~~ 245 (1167)
....++..|..++...+.|.+|..+|+..++. |...+.+.+..
T Consensus 112 ~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~ 157 (974)
T KOG1166|consen 112 TLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSN 157 (974)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 24688999999999999999999999999986 44444444433
No 497
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.96 E-value=17 Score=29.27 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 424 EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 424 ~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
+..+..|.-..+.|++++|+...+.+ +++.|+|..+......++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~l-L~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDAL-LEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-HHHTTS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHH-HhhCCCcHHHHHHHHHHHHH
No 498
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=71.82 E-value=2.6 Score=48.53 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=0.0
Q ss_pred CHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEeccC
Q 001064 1044 TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1044 t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r~ 1110 (1167)
+-.+|..+|.+||.|.. |.++.... .|.|+|.+..++-.|-...+..|++|.|+|.+-.+
T Consensus 386 t~a~ln~hfA~fG~i~n--~qv~~~~~-----~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIEN--IQVDYSSL-----HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhhhhcCcccc--ccccCchh-----hheeeeeccccccchhccccceecCceeEEEEecC
No 499
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=71.56 E-value=6.6 Score=36.45 Aligned_cols=50 Identities=30% Similarity=0.397 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001064 1108 RRPNTGSTSRGGRRGRGRGSYQTDAPRGRFGGRGLGRGSAQDGGDYNRSRG 1158 (1167)
Q Consensus 1108 ~r~~~~~~~~g~~~g~grg~~~~~~~rg~~g~~~~gr~~~~~~~~~~r~~g 1158 (1167)
...+.+..+|..++|+|+|. +.+++.++++++|+++|-..+-.+.++++.
T Consensus 85 ~~~~~r~~~r~~~~grG~gn-g~~~~~~rg~~~g~~~g~~n~~~~~~~~rq 134 (134)
T KOG3293|consen 85 SNNRNRKQSRDRGRGRGRGN-GNRGGNRRGGGRGGSMGQNNSIPGRGSNRQ 134 (134)
T ss_pred HhccchhccccccCCcCCCC-CCCCCCcCCCCCCCCcCCCCCCCcccccCC
No 500
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=71.47 E-value=66 Score=38.90 Aligned_cols=151 Identities=11% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHH--HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHH
Q 001064 315 IAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY--LDFIERDGDFNKVVKLYERCLIACANYPEYWI 392 (1167)
Q Consensus 315 i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y--~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~ 392 (1167)
+....+.+...+...-++..+...+. +++.+.++...+ .-.+...++...+....+.++..++.+.....
T Consensus 34 ~~~~~~~l~~~~~~~~~~~a~~~~~~--------~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 105 (620)
T COG3914 34 LAIVLEWLNAEGLQALAIYALLLGIA--------INDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQ 105 (620)
T ss_pred HHHHHHHhcccCchhHHHHHHHccCc--------cCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHH
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHH------HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 001064 393 RYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA------ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHAN 466 (1167)
Q Consensus 393 ~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~------a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~ 466 (1167)
.++..++..|....+...+........+++..+.... ++++...|+..++....+++ .++.|.+..+...++.
T Consensus 106 ~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~-~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 106 NLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERA-VDLLPKYPRVLGALMT 184 (620)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhhhhhhhhHhHHHH
Q ss_pred HHHHcCCH
Q 001064 467 MERRLGNL 474 (1167)
Q Consensus 467 ~e~r~g~~ 474 (1167)
...+..++
T Consensus 185 ~r~~~cs~ 192 (620)
T COG3914 185 ARQEQCSW 192 (620)
T ss_pred HHHHhccc
Done!