Query 001064
Match_columns 1167
No_of_seqs 892 out of 4236
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 09:12:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 7.4E-50 2.5E-54 494.7 53.7 483 79-641 48-593 (679)
2 2ooe_A Cleavage stimulation fa 100.0 6.2E-48 2.1E-52 473.8 52.5 479 86-643 2-520 (530)
3 2uy1_A Cleavage stimulation fa 100.0 5.4E-38 1.9E-42 379.0 36.6 429 114-652 10-467 (493)
4 2ooe_A Cleavage stimulation fa 100.0 1.7E-31 5.9E-36 327.5 34.4 416 76-567 25-494 (530)
5 4e6h_A MRNA 3'-END-processing 100.0 1.9E-30 6.6E-35 321.1 43.2 467 48-570 51-575 (679)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.3E-30 1.5E-34 301.3 42.9 376 74-545 10-385 (388)
7 1w3b_A UDP-N-acetylglucosamine 100.0 8.8E-28 3E-32 281.6 46.0 369 103-570 5-373 (388)
8 3q90_A RAS GTPase-activating p 100.0 7.7E-31 2.6E-35 257.2 11.8 123 717-840 8-139 (140)
9 3ujm_A Rasputin; NTF2-like fol 100.0 1.4E-30 4.9E-35 248.4 10.9 116 717-836 2-120 (120)
10 2xpi_A Anaphase-promoting comp 100.0 1.6E-28 5.6E-33 304.7 28.4 441 68-570 89-584 (597)
11 2xpi_A Anaphase-promoting comp 100.0 7.2E-27 2.5E-31 289.9 42.5 454 91-612 77-583 (597)
12 2uy1_A Cleavage stimulation fa 100.0 6.9E-28 2.4E-32 290.7 30.9 406 78-604 10-448 (493)
13 3fp2_A TPR repeat-containing p 100.0 4.1E-26 1.4E-30 278.9 43.2 414 69-570 31-496 (537)
14 2y4t_A DNAJ homolog subfamily 100.0 3.6E-25 1.2E-29 264.2 43.2 348 80-542 9-372 (450)
15 2gw1_A Mitochondrial precursor 100.0 8.2E-26 2.8E-30 274.2 37.4 406 72-538 15-488 (514)
16 1gy6_A Nuclear transport facto 99.9 5.4E-28 1.8E-32 233.1 13.0 118 718-840 7-126 (127)
17 2ond_A Cleavage stimulation fa 99.9 2.2E-26 7.6E-31 261.3 28.3 274 348-643 2-298 (308)
18 1zo2_A NTF2, nuclear transport 99.9 7.1E-28 2.4E-32 232.6 12.9 116 717-837 10-128 (129)
19 3nv0_B NTF2-related export pro 99.9 7.4E-28 2.5E-32 237.5 13.3 115 718-837 33-154 (154)
20 1gy7_A Nuclear transport facto 99.9 9.3E-28 3.2E-32 230.7 13.0 117 718-838 5-124 (125)
21 2gw1_A Mitochondrial precursor 99.9 1.4E-24 4.9E-29 263.2 43.7 431 96-570 5-483 (514)
22 3fp2_A TPR repeat-containing p 99.9 4.3E-25 1.5E-29 269.8 34.9 444 96-612 24-495 (537)
23 2qiy_A UBP3-associated protein 99.9 8.7E-27 3E-31 232.9 12.2 124 716-841 9-152 (154)
24 3ieg_A DNAJ homolog subfamily 99.9 3.8E-23 1.3E-27 237.4 42.9 334 96-544 2-351 (359)
25 1jkg_A P15; NTF2-like domain, 99.9 2.6E-26 8.9E-31 225.5 13.4 116 718-838 13-138 (140)
26 2y4t_A DNAJ homolog subfamily 99.9 3.8E-24 1.3E-28 255.3 33.6 358 45-491 8-414 (450)
27 3ieg_A DNAJ homolog subfamily 99.9 6E-22 2.1E-26 227.4 37.7 312 70-470 10-352 (359)
28 3hym_B Cell division cycle pro 99.9 6.4E-21 2.2E-25 216.4 32.6 301 86-475 11-322 (330)
29 3hym_B Cell division cycle pro 99.9 1E-20 3.6E-25 214.7 30.4 304 121-516 10-322 (330)
30 2ond_A Cleavage stimulation fa 99.9 6.8E-21 2.3E-25 216.0 27.5 243 131-490 6-273 (308)
31 4g1t_A Interferon-induced prot 99.9 2.8E-20 9.7E-25 223.5 32.7 385 82-570 34-464 (472)
32 4g1t_A Interferon-induced prot 99.9 1.5E-19 5.1E-24 217.2 37.4 372 133-610 51-461 (472)
33 1fch_A Peroxisomal targeting s 99.9 1E-20 3.5E-25 218.9 25.8 305 113-489 39-361 (368)
34 4eqf_A PEX5-related protein; a 99.9 3.1E-20 1.1E-24 215.2 27.4 298 120-529 48-357 (365)
35 1fch_A Peroxisomal targeting s 99.9 2.7E-20 9.3E-25 215.3 26.1 316 115-529 17-360 (368)
36 4eqf_A PEX5-related protein; a 99.8 1.2E-19 3.9E-24 210.4 24.6 280 96-488 64-357 (365)
37 3cv0_A Peroxisome targeting si 99.8 6.2E-19 2.1E-23 199.7 27.5 287 95-490 19-318 (327)
38 2xm6_A Protein corresponding t 99.8 1.6E-16 5.3E-21 192.4 45.3 191 325-541 236-448 (490)
39 2h6f_A Protein farnesyltransfe 99.8 1.3E-18 4.3E-23 202.6 25.2 109 89-200 89-198 (382)
40 2h6f_A Protein farnesyltransfe 99.8 3E-18 1E-22 199.5 24.2 254 125-541 89-361 (382)
41 3cv0_A Peroxisome targeting si 99.8 3.1E-18 1.1E-22 193.9 23.2 275 66-449 24-312 (327)
42 2xm6_A Protein corresponding t 99.8 6.1E-15 2.1E-19 178.4 49.1 372 82-567 26-434 (490)
43 2pl2_A Hypothetical conserved 99.8 3.9E-17 1.3E-21 174.9 23.7 197 353-562 4-211 (217)
44 3uq3_A Heat shock protein STI1 99.7 8E-16 2.7E-20 167.5 31.2 130 326-465 119-254 (258)
45 3u4t_A TPR repeat-containing p 99.7 3.9E-16 1.3E-20 172.1 26.9 250 134-468 4-265 (272)
46 3sf4_A G-protein-signaling mod 99.7 5.6E-16 1.9E-20 181.0 28.9 329 95-515 7-363 (406)
47 3u4t_A TPR repeat-containing p 99.7 5.3E-16 1.8E-20 171.0 26.8 187 355-544 75-266 (272)
48 2pl2_A Hypothetical conserved 99.7 1.6E-16 5.5E-21 170.1 21.8 194 317-528 10-214 (217)
49 3uq3_A Heat shock protein STI1 99.7 1.3E-15 4.4E-20 165.8 27.9 239 96-430 4-254 (258)
50 2q7f_A YRRB protein; TPR, prot 99.7 5E-16 1.7E-20 167.8 23.3 210 319-545 30-239 (243)
51 4a1s_A PINS, partner of inscut 99.7 1E-15 3.5E-20 179.9 26.7 293 94-531 45-375 (411)
52 3mkr_A Coatomer subunit epsilo 99.7 1.2E-15 4E-20 171.3 25.6 255 77-460 13-271 (291)
53 3vtx_A MAMA; tetratricopeptide 99.7 8.7E-16 3E-20 159.1 22.6 173 354-535 5-177 (184)
54 3q2s_C Cleavage and polyadenyl 99.7 1.5E-17 5.1E-22 178.5 8.2 80 1030-1110 67-149 (229)
55 3mkr_A Coatomer subunit epsilo 99.7 5.8E-15 2E-19 165.6 29.7 192 326-537 79-273 (291)
56 3sf4_A G-protein-signaling mod 99.7 2.7E-15 9.1E-20 175.3 26.8 315 70-474 16-363 (406)
57 3ro2_A PINS homolog, G-protein 99.7 3.7E-15 1.3E-19 168.4 27.0 160 370-531 159-335 (338)
58 1h2v_Z 20 kDa nuclear CAP bind 99.7 1E-16 3.5E-21 162.0 12.4 83 1030-1113 38-121 (156)
59 1u6f_A Tcubp1, RNA-binding pro 99.7 4.8E-16 1.6E-20 153.8 16.6 84 1029-1113 40-124 (139)
60 4fxv_A ELAV-like protein 1; RN 99.7 1.4E-16 4.7E-21 147.2 11.4 81 1029-1110 17-98 (99)
61 1of5_A MRNA export factor MEX6 99.7 8.6E-17 2.9E-21 167.2 10.8 120 718-838 10-203 (221)
62 2ho1_A Type 4 fimbrial biogene 99.7 1.6E-14 5.5E-19 157.2 29.4 210 349-570 31-243 (252)
63 1jkg_B TAP; NTF2-like domain, 99.7 1.3E-16 4.4E-21 171.8 12.2 119 719-838 15-170 (250)
64 2ho1_A Type 4 fimbrial biogene 99.7 9.3E-15 3.2E-19 159.1 26.3 207 314-537 39-247 (252)
65 3ro2_A PINS homolog, G-protein 99.7 1.2E-14 4.1E-19 164.2 27.8 299 97-489 5-334 (338)
66 2vq2_A PILW, putative fimbrial 99.7 3.4E-14 1.2E-18 151.0 29.6 209 350-570 4-216 (225)
67 2q7f_A YRRB protein; TPR, prot 99.6 4.7E-15 1.6E-19 160.1 21.4 205 354-570 23-227 (243)
68 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.7E-15 1.3E-19 164.2 20.2 157 72-235 14-174 (275)
69 1q40_B MEX67, mRNA export fact 99.6 4.5E-16 1.5E-20 161.8 11.4 120 718-838 13-209 (219)
70 2vq2_A PILW, putative fimbrial 99.6 3.8E-14 1.3E-18 150.6 26.7 205 316-537 12-220 (225)
71 3e4b_A ALGK; tetratricopeptide 99.6 8.1E-15 2.8E-19 175.3 23.6 214 320-563 184-419 (452)
72 4abn_A Tetratricopeptide repea 99.6 7.5E-15 2.6E-19 176.7 22.2 206 326-546 82-305 (474)
73 2dgs_A DAZ-associated protein 99.6 2.2E-15 7.6E-20 139.5 13.0 84 1029-1113 8-91 (99)
74 1xi4_A Clathrin heavy chain; a 99.6 1.9E-13 6.6E-18 173.2 34.3 367 72-548 994-1370(1630)
75 2lxi_A RNA-binding protein 10; 99.6 5.7E-16 2E-20 140.8 8.2 81 1032-1113 2-85 (91)
76 2cqd_A RNA-binding region cont 99.6 6E-15 2.1E-19 140.9 15.1 85 1027-1112 13-97 (116)
77 1xi4_A Clathrin heavy chain; a 99.6 1.1E-12 3.8E-17 166.4 39.7 399 92-610 983-1387(1630)
78 4abn_A Tetratricopeptide repea 99.6 3.5E-14 1.2E-18 170.9 24.9 224 113-449 82-318 (474)
79 1x5t_A Splicing factor 3B subu 99.6 3.5E-15 1.2E-19 137.3 12.2 83 1030-1113 4-88 (96)
80 1whw_A Hypothetical protein ri 99.6 4.1E-15 1.4E-19 137.7 12.7 83 1030-1113 7-90 (99)
81 3vtx_A MAMA; tetratricopeptide 99.6 4.6E-14 1.6E-18 146.0 22.1 164 317-490 10-173 (184)
82 3s8s_A Histone-lysine N-methyl 99.6 2.9E-15 9.9E-20 141.1 11.6 81 1030-1111 5-86 (110)
83 3pgw_S U1-70K; protein-RNA com 99.6 3E-15 1E-19 175.7 14.5 84 1030-1114 101-185 (437)
84 2dnz_A Probable RNA-binding pr 99.6 4.4E-15 1.5E-19 136.3 12.5 83 1030-1113 4-87 (95)
85 1x4b_A Heterogeneous nuclear r 99.6 3.1E-15 1E-19 142.9 11.8 84 1029-1113 25-108 (116)
86 4gyw_A UDP-N-acetylglucosamine 99.6 1.8E-14 6.2E-19 180.5 21.3 174 349-531 4-177 (723)
87 2cpz_A CUG triplet repeat RNA- 99.6 9.7E-15 3.3E-19 139.2 14.4 84 1029-1113 23-107 (115)
88 4i17_A Hypothetical protein; T 99.6 8.9E-14 3.1E-18 149.3 23.6 180 354-542 7-223 (228)
89 2fy1_A RNA-binding motif prote 99.6 7.9E-15 2.7E-19 139.8 13.5 81 1030-1112 6-87 (116)
90 2dng_A Eukaryotic translation 99.6 8E-15 2.7E-19 136.8 13.1 83 1029-1113 13-95 (103)
91 1x5u_A Splicing factor 3B subu 99.6 8.5E-15 2.9E-19 137.2 13.1 84 1029-1113 13-97 (105)
92 2cq0_A Eukaryotic translation 99.6 7.1E-15 2.4E-19 137.1 12.4 85 1028-1113 12-97 (103)
93 3ex7_B RNA-binding protein 8A; 99.6 3.5E-15 1.2E-19 144.8 10.7 84 1029-1113 20-104 (126)
94 4a1s_A PINS, partner of inscut 99.6 9.6E-14 3.3E-18 163.0 24.7 283 317-612 53-376 (411)
95 2dh8_A DAZ-associated protein 99.6 4.2E-15 1.4E-19 139.3 10.4 85 1028-1113 13-97 (105)
96 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.2E-13 1.4E-17 147.6 28.3 227 325-570 18-249 (275)
97 2dgo_A Cytotoxic granule-assoc 99.6 2.6E-14 8.9E-19 136.3 15.6 85 1028-1113 12-97 (115)
98 2cqb_A Peptidyl-prolyl CIS-tra 99.6 8E-15 2.7E-19 136.6 11.5 83 1030-1113 11-94 (102)
99 1wi8_A EIF-4B, eukaryotic tran 99.6 1.1E-14 3.9E-19 136.0 12.4 83 1029-1113 13-96 (104)
100 3e4b_A ALGK; tetratricopeptide 99.6 9.7E-13 3.3E-17 157.2 32.5 349 102-566 8-388 (452)
101 2dnm_A SRP46 splicing factor; 99.6 7.7E-15 2.6E-19 136.9 11.2 84 1029-1113 11-95 (103)
102 2lkz_A RNA-binding protein 5; 99.6 4.2E-15 1.4E-19 135.6 9.0 80 1030-1110 8-94 (95)
103 1x5s_A Cold-inducible RNA-bind 99.6 1E-14 3.5E-19 135.8 11.6 83 1030-1113 11-94 (102)
104 1ouv_A Conserved hypothetical 99.6 1.5E-12 5.3E-17 143.8 31.3 128 93-232 2-141 (273)
105 1x4h_A RNA-binding protein 28; 99.6 1.6E-14 5.4E-19 136.8 12.9 85 1028-1113 12-103 (111)
106 2cpe_A RNA-binding protein EWS 99.6 1.7E-14 5.7E-19 137.1 12.9 85 1028-1113 12-105 (113)
107 3s7r_A Heterogeneous nuclear r 99.6 9.3E-15 3.2E-19 131.7 10.5 80 1028-1108 8-87 (87)
108 1x4a_A Splicing factor, argini 99.6 3.6E-14 1.2E-18 133.9 14.5 81 1028-1112 19-100 (109)
109 1wez_A HnRNP H', FTP-3, hetero 99.6 6.8E-15 2.3E-19 136.6 9.3 79 1030-1111 14-92 (102)
110 2dgp_A Bruno-like 4, RNA bindi 99.6 1.8E-14 6.1E-19 135.2 12.0 84 1028-1112 10-97 (106)
111 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.4E-14 4.7E-19 130.6 10.8 81 1030-1111 5-86 (87)
112 2cqg_A TDP-43, TAR DNA-binding 99.6 2.8E-14 9.4E-19 133.1 13.2 84 1028-1113 12-95 (103)
113 2rs2_A Musashi-1, RNA-binding 99.6 1.1E-14 3.9E-19 137.1 10.5 84 1029-1113 23-106 (109)
114 2cph_A RNA binding motif prote 99.6 2.5E-14 8.4E-19 134.5 12.8 85 1028-1113 12-99 (107)
115 2jwn_A Embryonic polyadenylate 99.6 1E-14 3.5E-19 141.1 10.4 83 1030-1113 35-117 (124)
116 3md1_A Nuclear and cytoplasmic 99.5 2E-14 6.8E-19 128.3 11.4 80 1032-1112 2-82 (83)
117 1s79_A Lupus LA protein; RRM, 99.5 7.4E-15 2.5E-19 136.4 8.8 80 1028-1109 8-87 (103)
118 2cq4_A RNA binding motif prote 99.5 3.6E-15 1.2E-19 142.0 6.8 82 1029-1111 23-104 (114)
119 2d9p_A Polyadenylate-binding p 99.5 2.4E-14 8.3E-19 133.5 12.3 83 1028-1113 12-95 (103)
120 2cpf_A RNA binding motif prote 99.5 1.8E-14 6.2E-19 133.1 11.3 83 1030-1113 4-90 (98)
121 3ucg_A Polyadenylate-binding p 99.5 8.3E-15 2.8E-19 132.7 8.8 83 1030-1113 5-87 (89)
122 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.6E-14 5.5E-19 129.5 10.5 79 1030-1109 6-85 (85)
123 2khc_A Testis-specific RNP-typ 99.5 3.5E-14 1.2E-18 136.0 13.6 80 1029-1109 38-118 (118)
124 1ouv_A Conserved hypothetical 99.5 2.6E-12 8.9E-17 142.0 30.7 228 129-489 2-253 (273)
125 2jrs_A RNA-binding protein 39; 99.5 2.3E-14 7.9E-19 134.7 11.9 83 1029-1112 24-107 (108)
126 2do4_A Squamous cell carcinoma 99.5 3.4E-14 1.2E-18 131.7 12.9 83 1029-1113 15-98 (100)
127 2x1f_A MRNA 3'-END-processing 99.5 2E-14 6.7E-19 132.2 11.0 81 1031-1112 2-83 (96)
128 1x4c_A Splicing factor, argini 99.5 4.4E-14 1.5E-18 132.9 13.6 77 1030-1114 14-96 (108)
129 2dnh_A Bruno-like 5, RNA bindi 99.5 4.4E-14 1.5E-18 132.3 13.2 83 1029-1113 13-99 (105)
130 3n9u_C Cleavage and polyadenyl 99.5 1.4E-14 4.9E-19 145.3 10.3 80 1030-1110 54-136 (156)
131 3p5t_L Cleavage and polyadenyl 99.5 5.9E-15 2E-19 133.9 6.6 81 1032-1113 2-85 (90)
132 2dhg_A TRNA selenocysteine ass 99.5 2.4E-14 8.3E-19 133.8 10.9 81 1030-1112 8-91 (104)
133 2e5h_A Zinc finger CCHC-type a 99.5 3.2E-14 1.1E-18 130.3 11.3 80 1029-1109 14-94 (94)
134 1p27_B RNA-binding protein 8A; 99.5 2.8E-14 9.6E-19 133.9 11.1 83 1029-1112 21-104 (106)
135 2cpy_A RNA-binding protein 12; 99.5 5.8E-15 2E-19 140.4 6.3 81 1029-1111 13-94 (114)
136 3ns6_A Eukaryotic translation 99.5 6.8E-15 2.3E-19 136.3 6.5 82 1029-1111 4-93 (100)
137 1oo0_B CG8781-PA, drosophila Y 99.5 3.2E-14 1.1E-18 134.4 11.1 84 1029-1113 24-108 (110)
138 2div_A TRNA selenocysteine ass 99.5 3.5E-14 1.2E-18 131.4 11.1 82 1030-1112 8-95 (99)
139 2cqc_A Arginine/serine-rich sp 99.5 4.5E-14 1.5E-18 129.5 11.6 82 1028-1110 12-94 (95)
140 2cqp_A RNA-binding protein 12; 99.5 4.9E-14 1.7E-18 130.1 11.7 81 1030-1111 14-95 (98)
141 2m2b_A RNA-binding protein 10; 99.5 2.4E-14 8.2E-19 139.8 10.1 83 1029-1113 21-110 (131)
142 2cqi_A Nucleolysin TIAR; RNA r 99.5 8.3E-14 2.8E-18 129.9 13.2 82 1028-1112 12-94 (103)
143 2la6_A RNA-binding protein FUS 99.5 4.9E-14 1.7E-18 130.3 11.6 79 1030-1109 12-99 (99)
144 2cq3_A RNA-binding protein 9; 99.5 1.1E-13 3.9E-18 128.9 14.1 83 1028-1113 12-95 (103)
145 4gyw_A UDP-N-acetylglucosamine 99.5 2.2E-13 7.5E-18 170.7 21.2 171 382-564 3-173 (723)
146 1sjq_A Polypyrimidine tract-bi 99.5 2.6E-14 8.9E-19 131.6 9.4 78 1029-1113 14-94 (105)
147 2dgu_A Heterogeneous nuclear r 99.5 7.5E-14 2.6E-18 130.1 12.7 75 1030-1113 10-85 (103)
148 3nf1_A KLC 1, kinesin light ch 99.5 1.6E-13 5.4E-18 153.8 17.9 134 355-489 154-309 (311)
149 4f25_A Polyadenylate-binding p 99.5 4.8E-14 1.6E-18 134.3 11.3 79 1031-1112 5-84 (115)
150 3as5_A MAMA; tetratricopeptide 99.5 7.3E-13 2.5E-17 135.7 20.9 172 353-533 7-178 (186)
151 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.1E-14 3.8E-19 134.9 6.3 81 1030-1112 18-99 (100)
152 2mss_A Protein (musashi1); RNA 99.5 2E-14 6.8E-19 125.5 7.4 75 1033-1108 1-75 (75)
153 2pzi_A Probable serine/threoni 99.5 4.8E-13 1.6E-17 168.3 23.1 248 349-611 389-661 (681)
154 1wg5_A Heterogeneous nuclear r 99.5 8.3E-14 2.8E-18 130.0 11.8 81 1029-1111 13-94 (104)
155 2dgw_A Probable RNA-binding pr 99.5 9.3E-14 3.2E-18 126.3 11.7 80 1030-1112 9-88 (91)
156 2dgv_A HnRNP M, heterogeneous 99.5 7.5E-14 2.6E-18 127.2 11.1 81 1030-1113 7-88 (92)
157 3ulq_A Response regulator aspa 99.5 2.1E-12 7.1E-17 150.6 26.4 315 97-489 16-370 (383)
158 4a8x_A RNA-binding protein wit 99.5 6E-14 2E-18 126.7 10.2 82 1030-1112 3-86 (88)
159 2kxn_B Transformer-2 protein h 99.5 4.8E-14 1.6E-18 136.9 10.1 84 1029-1113 44-128 (129)
160 2dnq_A RNA-binding protein 4B; 99.5 1.2E-13 4.2E-18 125.2 12.2 75 1030-1113 7-82 (90)
161 3qky_A Outer membrane assembly 99.5 8.6E-13 3E-17 145.0 21.6 189 349-542 10-238 (261)
162 2do0_A HnRNP M, heterogeneous 99.5 2.9E-13 9.9E-18 128.7 15.3 82 1029-1112 13-95 (114)
163 2fc8_A NCL protein; structure 99.5 9E-14 3.1E-18 129.4 11.4 80 1029-1112 13-93 (102)
164 2ywk_A Putative RNA-binding pr 99.5 7.3E-14 2.5E-18 128.1 10.5 81 1028-1110 13-94 (95)
165 2lcw_A RNA-binding protein FUS 99.2 2.1E-15 7.3E-20 144.0 0.0 84 1029-1113 5-97 (116)
166 2hgn_A Heterogeneous nuclear r 99.5 9.9E-15 3.4E-19 142.7 4.6 79 1030-1111 45-123 (139)
167 2dgx_A KIAA0430 protein; RRM d 99.5 1.1E-13 3.6E-18 127.2 11.1 79 1030-1112 8-91 (96)
168 1fj7_A Nucleolin RBD1, protein 99.5 2.9E-14 9.8E-19 132.5 7.0 81 1030-1112 16-96 (101)
169 2cpx_A Hypothetical protein FL 99.5 1.1E-13 3.7E-18 131.9 11.1 83 1030-1113 24-107 (115)
170 2fc9_A NCL protein; structure 99.5 1.6E-13 5.6E-18 127.4 11.9 80 1028-1112 12-92 (101)
171 2wbr_A GW182, gawky, LD47780P; 99.5 7.9E-14 2.7E-18 122.0 9.0 72 1031-1109 7-79 (89)
172 1wel_A RNA-binding protein 12; 99.5 7E-14 2.4E-18 135.1 9.6 81 1029-1110 23-103 (124)
173 3r27_A HnRNP L, heterogeneous 99.5 9.7E-14 3.3E-18 126.4 9.8 75 1030-1111 20-97 (100)
174 1p1t_A Cleavage stimulation fa 99.5 4.7E-14 1.6E-18 131.8 7.8 83 1029-1112 6-89 (104)
175 3nf1_A KLC 1, kinesin light ch 99.5 3.5E-13 1.2E-17 150.9 16.4 259 92-418 22-308 (311)
176 2kvi_A Nuclear polyadenylated 99.5 8.6E-14 3E-18 127.9 9.3 75 1030-1113 9-85 (96)
177 2dgt_A RNA-binding protein 30; 99.5 2.8E-13 9.6E-18 123.4 12.6 76 1029-1113 8-84 (92)
178 3beg_B Splicing factor, argini 99.5 5.9E-14 2E-18 133.5 8.4 75 1030-1112 15-95 (115)
179 2cq1_A PTB-like protein L; RRM 99.5 2.8E-13 9.4E-18 124.9 12.5 78 1029-1113 13-93 (101)
180 2ek1_A RNA-binding protein 12; 99.5 9.3E-14 3.2E-18 127.4 9.2 80 1030-1110 14-94 (95)
181 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.4E-13 4.7E-18 140.2 11.3 83 1030-1113 71-154 (165)
182 4i17_A Hypothetical protein; T 99.5 1.8E-12 6.2E-17 139.0 20.8 165 317-491 12-213 (228)
183 2err_A Ataxin-2-binding protei 99.5 1.6E-13 5.4E-18 129.2 10.5 80 1029-1111 27-107 (109)
184 1x4d_A Matrin 3; structural ge 99.5 1.9E-13 6.6E-18 125.8 10.7 76 1030-1112 14-93 (102)
185 2ad9_A Polypyrimidine tract-bi 99.5 2.1E-13 7E-18 128.9 11.1 79 1029-1114 29-110 (119)
186 2dnn_A RNA-binding protein 12; 99.5 1.2E-13 4.1E-18 129.3 9.5 78 1030-1110 15-92 (109)
187 2dis_A Unnamed protein product 99.5 2E-13 7E-18 128.7 11.1 84 1030-1113 7-94 (109)
188 3ulh_A THO complex subunit 4; 99.5 2.5E-13 8.5E-18 127.6 11.5 79 1029-1109 27-106 (107)
189 3ulq_A Response regulator aspa 99.5 2.7E-11 9.1E-16 141.1 31.5 239 318-565 109-368 (383)
190 1iqt_A AUF1, heterogeneous nuc 99.5 3.5E-14 1.2E-18 123.9 5.2 75 1033-1108 1-75 (75)
191 3as5_A MAMA; tetratricopeptide 99.5 4.2E-12 1.5E-16 129.9 21.8 168 314-491 10-177 (186)
192 1uaw_A Mouse-musashi-1; RNP-ty 99.5 6.7E-14 2.3E-18 122.8 6.8 76 1032-1108 1-76 (77)
193 2cpi_A CCR4-NOT transcription 99.5 1.8E-13 6.3E-18 129.3 10.3 82 1030-1112 14-102 (111)
194 2kn4_A Immunoglobulin G-bindin 99.5 2.4E-13 8.3E-18 137.5 11.9 83 1030-1113 69-152 (158)
195 2nlw_A Eukaryotic translation 99.5 1.4E-13 4.8E-18 128.7 9.2 79 1030-1111 14-100 (105)
196 2lea_A Serine/arginine-rich sp 99.5 9E-14 3.1E-18 136.2 8.3 84 1029-1113 45-129 (135)
197 1x4f_A Matrin 3; structural ge 99.5 3.4E-13 1.2E-17 126.0 11.7 79 1028-1113 22-104 (112)
198 2db1_A Heterogeneous nuclear r 99.4 2.1E-13 7.2E-18 130.3 10.6 80 1029-1110 15-97 (118)
199 2cpd_A Apobec-1 stimulating pr 99.4 5.7E-13 2E-17 123.1 13.0 74 1030-1112 14-90 (99)
200 1wex_A Hypothetical protein (r 99.4 6.6E-13 2.3E-17 123.2 13.3 78 1029-1113 13-93 (104)
201 2e5j_A Methenyltetrahydrofolat 99.4 4.4E-13 1.5E-17 123.4 11.8 80 1028-1113 16-96 (97)
202 2hgl_A HNRPF protein, heteroge 99.4 1.5E-13 5E-18 134.0 9.0 80 1029-1110 42-124 (136)
203 2jvr_A Nucleolar protein 3; RN 99.4 1.4E-13 4.8E-18 129.1 8.5 77 1030-1111 27-105 (111)
204 2a3j_A U1 small nuclear ribonu 99.4 2.4E-13 8.2E-18 130.9 10.3 79 1030-1112 28-111 (127)
205 2dnp_A RNA-binding protein 14; 99.4 4.2E-13 1.4E-17 121.6 11.3 75 1029-1112 7-82 (90)
206 2kt5_A RNA and export factor-b 99.4 9.3E-13 3.2E-17 127.2 14.4 82 1029-1112 33-115 (124)
207 1fjc_A Nucleolin RBD2, protein 99.4 1.8E-13 6.2E-18 125.7 8.9 79 1028-1112 13-92 (96)
208 4ga2_A E3 SUMO-protein ligase 99.4 7.7E-13 2.6E-17 132.5 14.2 145 319-473 4-149 (150)
209 1x4e_A RNA binding motif, sing 99.4 4.8E-14 1.7E-18 126.4 4.8 79 1030-1109 4-83 (85)
210 2cqh_A IGF-II mRNA-binding pro 99.4 3.6E-13 1.2E-17 122.9 10.6 75 1030-1112 7-84 (93)
211 1x5o_A RNA binding motif, sing 99.4 7E-13 2.4E-17 126.1 13.0 82 1028-1111 22-112 (114)
212 3urz_A Uncharacterized protein 99.4 1.6E-12 5.3E-17 138.0 17.2 170 354-533 4-191 (208)
213 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 4.3E-13 1.5E-17 132.6 11.9 79 1029-1108 61-140 (140)
214 2ki2_A SS-DNA binding protein 99.4 6.1E-14 2.1E-18 127.2 5.2 79 1032-1112 2-81 (90)
215 2xs2_A Deleted in azoospermia- 99.4 1E-13 3.5E-18 129.0 6.6 81 1029-1112 7-87 (102)
216 3dra_A Protein farnesyltransfe 99.4 2.2E-11 7.6E-16 136.2 26.7 96 370-465 202-300 (306)
217 2krb_A Eukaryotic translation 99.4 1.2E-13 4E-18 122.6 6.5 72 1031-1105 1-80 (81)
218 1wf1_A RNA-binding protein RAL 99.4 5.1E-13 1.8E-17 126.1 11.3 74 1030-1112 26-101 (110)
219 2pzi_A Probable serine/threoni 99.4 3.5E-12 1.2E-16 160.3 22.2 179 323-510 402-580 (681)
220 2lmi_A GRSF-1, G-rich sequence 99.4 1.3E-13 4.3E-18 129.5 6.7 80 1029-1110 9-91 (107)
221 2cpj_A Non-POU domain-containi 99.4 6.8E-13 2.3E-17 122.6 11.6 77 1029-1112 13-90 (99)
222 2e5g_A U6 snRNA-specific termi 99.4 6.9E-13 2.3E-17 121.3 11.2 77 1030-1112 7-83 (94)
223 3nv0_A Nuclear RNA export fact 99.4 8.6E-13 2.9E-17 136.4 12.7 116 720-835 14-182 (205)
224 2jvo_A Nucleolar protein 3; nu 99.4 5.6E-13 1.9E-17 125.1 10.2 75 1029-1112 29-104 (108)
225 1x4g_A Nucleolysin TIAR; struc 99.4 7.6E-13 2.6E-17 124.7 11.1 78 1029-1113 23-101 (109)
226 2dha_A FLJ20171 protein; RRM d 99.4 2.3E-13 7.9E-18 130.2 7.6 79 1030-1110 22-104 (123)
227 2hvz_A Splicing factor, argini 99.4 4.2E-13 1.4E-17 124.5 9.2 75 1032-1112 1-76 (101)
228 2xnq_A Nuclear polyadenylated 99.4 8E-13 2.8E-17 121.5 11.0 73 1030-1111 21-95 (97)
229 1nu4_A U1A RNA binding domain; 99.4 3.6E-13 1.2E-17 124.0 8.5 79 1030-1112 7-90 (97)
230 2la4_A Nuclear and cytoplasmic 99.4 4.8E-13 1.6E-17 124.2 9.1 75 1030-1111 26-101 (101)
231 1hz4_A MALT regulatory protein 99.4 2.3E-10 7.8E-15 132.5 33.6 207 322-530 103-324 (373)
232 2hgm_A HNRPF protein, heteroge 99.4 3.3E-13 1.1E-17 129.3 7.6 78 1030-1110 41-120 (126)
233 1x5p_A Negative elongation fac 99.4 2E-12 7E-17 118.9 12.6 76 1029-1113 13-89 (97)
234 3dra_A Protein farnesyltransfe 99.4 2.9E-11 1E-15 135.2 24.2 236 309-564 30-286 (306)
235 1why_A Hypothetical protein ri 99.4 1E-12 3.5E-17 120.9 10.2 77 1030-1113 16-95 (97)
236 2j8a_A Histone-lysine N-methyl 99.4 5.4E-13 1.8E-17 124.4 8.2 78 1032-1110 3-95 (136)
237 3qky_A Outer membrane assembly 99.4 2.5E-11 8.6E-16 133.2 22.8 69 356-425 150-231 (261)
238 2ytc_A PRE-mRNA-splicing facto 99.4 1.6E-12 5.3E-17 116.5 10.6 74 1029-1109 10-85 (85)
239 4ga2_A E3 SUMO-protein ligase 99.4 9.2E-13 3.1E-17 131.9 9.8 143 362-513 5-148 (150)
240 3d2w_A TAR DNA-binding protein 99.4 8.9E-13 3E-17 119.0 8.2 77 1029-1112 9-85 (89)
241 3q15_A PSP28, response regulat 99.4 8.6E-11 2.9E-15 136.6 27.1 315 98-489 17-367 (378)
242 3dss_A Geranylgeranyl transfer 99.4 1E-10 3.4E-15 131.6 26.3 226 326-567 43-306 (331)
243 1l3k_A Heterogeneous nuclear r 99.4 1.6E-12 5.5E-17 136.4 11.0 82 1031-1113 104-185 (196)
244 2r5s_A Uncharacterized protein 99.4 3.5E-12 1.2E-16 131.2 13.1 166 354-527 6-172 (176)
245 1qqe_A Vesicular transport pro 99.4 1E-11 3.5E-16 139.1 18.0 219 314-537 39-278 (292)
246 3edt_B KLC 2, kinesin light ch 99.4 1.8E-11 6.2E-16 134.5 19.4 224 329-564 25-280 (283)
247 1wf0_A TDP-43, TAR DNA-binding 99.3 8E-13 2.8E-17 119.2 6.7 76 1030-1112 4-79 (88)
248 1qqe_A Vesicular transport pro 99.3 9.9E-11 3.4E-15 131.0 25.4 201 362-565 45-269 (292)
249 2yhc_A BAMD, UPF0169 lipoprote 99.3 4.1E-11 1.4E-15 128.6 21.1 172 355-532 5-217 (225)
250 3q15_A PSP28, response regulat 99.3 5E-10 1.7E-14 130.2 31.9 239 317-564 106-364 (378)
251 3lqv_A PRE-mRNA branch site pr 99.3 2.4E-12 8.1E-17 122.6 10.0 78 1030-1111 7-85 (115)
252 1whx_A Hypothetical protein ri 99.3 1.5E-12 5E-17 122.9 8.1 75 1030-1111 9-84 (111)
253 3egn_A RNA-binding protein 40; 99.3 1.3E-12 4.4E-17 129.7 7.9 83 1030-1112 44-131 (143)
254 2cq2_A Hypothetical protein LO 99.3 2.5E-12 8.5E-17 120.1 9.0 77 1030-1113 24-108 (114)
255 1sjr_A Polypyrimidine tract-bi 99.3 5.1E-12 1.7E-16 125.4 11.5 79 1030-1113 45-126 (164)
256 2e44_A Insulin-like growth fac 99.3 4.3E-12 1.5E-16 116.5 9.9 78 1030-1111 14-92 (96)
257 2i2y_A Fusion protein consists 99.3 3.6E-12 1.2E-16 127.6 10.1 77 1030-1112 72-149 (150)
258 1l3k_A Heterogeneous nuclear r 99.3 4.5E-12 1.5E-16 132.9 11.2 82 1029-1111 11-92 (196)
259 2f3j_A RNA and export factor b 99.3 4.8E-12 1.6E-16 129.9 10.8 81 1029-1111 86-167 (177)
260 4f02_A Polyadenylate-binding p 99.3 4.9E-12 1.7E-16 134.7 11.4 81 1030-1111 14-95 (213)
261 2vsy_A XCC0866; transferase, g 99.3 3.8E-11 1.3E-15 147.9 21.0 162 367-537 2-166 (568)
262 2diu_A KIAA0430 protein; struc 99.3 1.2E-11 4E-16 109.2 11.6 73 1031-1114 8-87 (96)
263 3edt_B KLC 2, kinesin light ch 99.3 6.9E-11 2.4E-15 129.8 20.7 232 366-608 13-281 (283)
264 3urz_A Uncharacterized protein 99.3 4.6E-11 1.6E-15 126.5 18.4 162 318-490 10-189 (208)
265 3qou_A Protein YBBN; thioredox 99.3 3.2E-11 1.1E-15 134.7 17.3 170 351-527 114-283 (287)
266 3zzy_A Polypyrimidine tract-bi 99.3 1.5E-11 5E-16 117.6 12.0 77 1030-1112 27-107 (130)
267 2cjk_A Nuclear polyadenylated 99.3 3.7E-12 1.3E-16 129.8 8.4 80 1031-1111 87-166 (167)
268 1wg1_A KIAA1579 protein, homol 99.3 5.9E-12 2E-16 113.5 8.7 74 1030-1111 4-78 (88)
269 3dss_A Geranylgeranyl transfer 99.3 1.7E-09 5.8E-14 121.6 30.6 228 366-611 41-307 (331)
270 4gco_A Protein STI-1; structur 99.3 6.4E-11 2.2E-15 114.6 16.3 117 349-467 8-124 (126)
271 3md3_A Nuclear and cytoplasmic 99.3 1.6E-11 5.6E-16 124.7 12.5 79 1030-1109 86-165 (166)
272 2dnl_A Cytoplasmic polyadenyla 99.3 7.1E-12 2.4E-16 119.0 8.9 77 1030-1109 7-86 (114)
273 1b7f_A Protein (SXL-lethal pro 99.3 1E-11 3.4E-16 126.7 10.7 82 1030-1112 2-84 (168)
274 1fxl_A Paraneoplastic encephal 99.3 1.3E-11 4.5E-16 125.6 11.6 81 1031-1112 2-83 (167)
275 1hz4_A MALT regulatory protein 99.3 1.9E-09 6.3E-14 124.7 30.8 285 313-611 15-325 (373)
276 2qfj_A FBP-interacting repress 99.3 1.5E-11 5.3E-16 131.0 12.0 83 1030-1113 124-207 (216)
277 1b89_A Protein (clathrin heavy 99.3 4.6E-11 1.6E-15 137.8 16.3 311 113-546 17-341 (449)
278 1b89_A Protein (clathrin heavy 99.3 5.5E-11 1.9E-15 137.2 16.9 386 35-560 9-412 (449)
279 3gyz_A Chaperone protein IPGC; 99.3 7.6E-11 2.6E-15 117.9 15.8 125 324-458 14-138 (151)
280 2e5i_A Heterogeneous nuclear r 99.3 5.2E-11 1.8E-15 113.4 13.6 75 1031-1112 25-103 (124)
281 3gyz_A Chaperone protein IPGC; 99.2 1.7E-11 5.8E-16 122.6 10.6 113 85-200 24-136 (151)
282 2voo_A Lupus LA protein; RNA-b 99.2 1.6E-11 5.3E-16 128.0 10.4 79 1030-1110 108-186 (193)
283 2r5s_A Uncharacterized protein 99.2 5.3E-11 1.8E-15 122.3 14.3 158 319-487 13-173 (176)
284 2hzc_A Splicing factor U2AF 65 99.2 1.4E-11 4.9E-16 110.6 8.6 71 1030-1107 5-86 (87)
285 3qou_A Protein YBBN; thioredox 99.2 1.8E-10 6.1E-15 128.6 19.4 169 384-564 113-283 (287)
286 2vgx_A Chaperone SYCD; alterna 99.2 4.6E-11 1.6E-15 119.1 12.9 117 84-203 8-124 (148)
287 2yh0_A Splicing factor U2AF 65 99.2 2.6E-11 8.7E-16 127.4 11.4 83 1030-1113 113-196 (198)
288 2bz2_A Negative elongation fac 99.2 2.4E-11 8.3E-16 116.3 10.0 74 1030-1112 38-112 (121)
289 4h7y_A Dual specificity protei 99.2 4.3E-11 1.5E-15 114.1 11.0 109 349-460 8-130 (161)
290 4f02_A Polyadenylate-binding p 99.2 7.9E-12 2.7E-16 133.0 6.4 78 1031-1111 103-181 (213)
291 2vsy_A XCC0866; transferase, g 99.2 1.5E-10 5.2E-15 142.5 18.9 156 326-491 3-161 (568)
292 2cjk_A Nuclear polyadenylated 99.2 1.8E-11 6E-16 124.8 8.5 80 1030-1111 2-81 (167)
293 4gco_A Protein STI-1; structur 99.2 1.2E-10 4.1E-15 112.7 13.6 119 89-213 5-123 (126)
294 3q7a_A Farnesyltransferase alp 99.2 2.1E-09 7.2E-14 121.3 25.7 245 355-612 55-335 (349)
295 2g4b_A Splicing factor U2AF 65 99.2 2.9E-11 1E-15 123.8 9.4 77 1031-1108 94-171 (172)
296 2fo7_A Synthetic consensus TPR 99.2 6.9E-10 2.4E-14 106.4 18.5 133 355-489 2-134 (136)
297 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.5E-10 5.1E-15 124.1 15.1 163 73-238 14-217 (225)
298 2pe8_A Splicing factor 45; RRM 99.2 7.9E-11 2.7E-15 109.4 10.8 80 1030-1110 7-93 (105)
299 2xcb_A PCRH, regulatory protei 99.2 1.1E-10 3.9E-15 115.2 12.6 116 84-202 5-120 (142)
300 2fo7_A Synthetic consensus TPR 99.2 8.2E-10 2.8E-14 105.9 18.4 135 389-532 2-136 (136)
301 2e2e_A Formate-dependent nitri 99.2 5.9E-10 2E-14 114.2 18.4 127 72-201 19-148 (177)
302 2ifu_A Gamma-SNAP; membrane fu 99.2 5.5E-10 1.9E-14 126.0 19.7 176 354-533 36-228 (307)
303 3md3_A Nuclear and cytoplasmic 99.2 7.1E-11 2.4E-15 120.0 11.0 80 1032-1113 1-81 (166)
304 1p5q_A FKBP52, FK506-binding p 99.2 1.2E-10 3.9E-15 133.4 13.2 188 40-233 76-293 (336)
305 3tyt_A Heterogeneous nuclear r 99.2 7.3E-11 2.5E-15 124.3 10.5 76 1030-1111 3-80 (205)
306 2qfj_A FBP-interacting repress 99.2 5.7E-11 2E-15 126.6 9.6 81 1030-1111 27-108 (216)
307 1fje_B Nucleolin RBD12, protei 99.1 8.5E-11 2.9E-15 120.8 9.6 76 1030-1111 98-174 (175)
308 1fje_B Nucleolin RBD12, protei 99.1 2.8E-11 9.7E-16 124.4 5.9 82 1029-1112 11-92 (175)
309 2xcb_A PCRH, regulatory protei 99.1 3.8E-10 1.3E-14 111.3 13.8 118 334-461 6-123 (142)
310 1b7f_A Protein (SXL-lethal pro 99.1 1.5E-10 5.1E-15 117.9 11.1 78 1030-1108 88-168 (168)
311 3pgw_A U1-A; protein-RNA compl 99.1 6.1E-10 2.1E-14 124.0 17.0 75 1029-1109 205-281 (282)
312 4f3v_A ESX-1 secretion system 99.1 1.3E-10 4.4E-15 127.1 11.1 206 324-547 18-255 (282)
313 1q42_A MTR2, mRNA transport re 99.1 7.1E-11 2.4E-15 115.1 7.9 106 716-822 23-146 (201)
314 4h7y_A Dual specificity protei 99.1 4.6E-10 1.6E-14 107.1 13.1 108 128-240 8-129 (161)
315 2vgx_A Chaperone SYCD; alterna 99.1 5.1E-10 1.7E-14 111.5 14.3 115 335-459 10-124 (148)
316 2c2l_A CHIP, carboxy terminus 99.1 1E-10 3.4E-15 130.3 10.1 197 353-565 3-199 (281)
317 3nmr_A Cugbp ELAV-like family 99.1 1.4E-10 4.8E-15 118.9 10.3 82 1030-1112 2-89 (175)
318 1p5q_A FKBP52, FK506-binding p 99.1 2.3E-10 7.7E-15 130.9 13.1 138 349-488 142-295 (336)
319 1fxl_A Paraneoplastic encephal 99.1 1.9E-10 6.4E-15 117.0 10.1 77 1031-1108 88-167 (167)
320 3u1l_A PRE-mRNA-splicing facto 99.1 1.1E-10 3.8E-15 124.0 8.6 79 1028-1113 131-231 (240)
321 1a17_A Serine/threonine protei 99.1 2.3E-09 7.9E-14 107.6 18.0 134 354-489 13-148 (166)
322 3q7a_A Farnesyltransferase alp 99.1 3.6E-09 1.2E-13 119.4 21.2 235 309-563 51-329 (349)
323 2d9o_A DNAJ (HSP40) homolog, s 99.1 7.7E-10 2.6E-14 101.3 12.7 76 1031-1113 10-92 (100)
324 3pgw_A U1-A; protein-RNA compl 99.1 2.3E-10 7.8E-15 127.4 11.2 80 1029-1112 7-91 (282)
325 3rjv_A Putative SEL1 repeat pr 99.1 4.7E-09 1.6E-13 111.3 20.5 177 330-530 4-199 (212)
326 2dit_A HIV TAT specific factor 99.1 9.7E-10 3.3E-14 103.7 12.8 79 1030-1113 14-104 (112)
327 2e2e_A Formate-dependent nitri 99.1 2.4E-09 8.2E-14 109.6 16.8 124 366-491 22-148 (177)
328 3nmr_A Cugbp ELAV-like family 99.1 3.4E-10 1.2E-14 116.1 9.9 77 1030-1108 94-174 (175)
329 2ifu_A Gamma-SNAP; membrane fu 99.0 1E-08 3.4E-13 115.5 21.7 200 390-601 38-254 (307)
330 3upv_A Heat shock protein STI1 99.0 4.8E-09 1.7E-13 100.7 16.4 113 354-468 4-122 (126)
331 2yh0_A Splicing factor U2AF 65 99.0 1.5E-10 5.1E-15 121.5 6.1 83 1030-1112 3-89 (198)
332 2vyi_A SGTA protein; chaperone 99.0 4.8E-09 1.7E-13 100.1 16.0 124 349-474 7-130 (131)
333 2ghp_A U4/U6 snRNA-associated 99.0 3.8E-10 1.3E-14 126.4 9.2 81 1030-1111 209-291 (292)
334 2lni_A Stress-induced-phosphop 99.0 3.9E-09 1.3E-13 101.4 15.1 123 349-473 11-133 (133)
335 2adc_A Polypyrimidine tract-bi 99.0 9.4E-10 3.2E-14 118.3 11.7 77 1030-1112 33-111 (229)
336 3smz_A Protein raver-1, ribonu 99.0 8.3E-10 2.8E-14 123.0 11.2 82 1030-1113 183-266 (284)
337 3smz_A Protein raver-1, ribonu 99.0 1.1E-09 3.7E-14 122.1 12.1 81 1031-1112 95-176 (284)
338 3sde_A Paraspeckle component 1 99.0 9E-10 3.1E-14 121.0 11.1 76 1029-1111 20-96 (261)
339 1qm9_A Polypyrimidine tract-bi 99.0 6.6E-10 2.2E-14 116.6 9.5 76 1031-1112 3-80 (198)
340 1a17_A Serine/threonine protei 99.0 1.6E-08 5.3E-13 101.5 19.2 131 96-232 12-144 (166)
341 1hh8_A P67PHOX, NCF-2, neutrop 99.0 6.6E-09 2.3E-13 109.5 17.1 136 391-532 9-154 (213)
342 2g4b_A Splicing factor U2AF 65 99.0 8.7E-10 3E-14 112.7 9.6 75 1030-1111 3-88 (172)
343 3upv_A Heat shock protein STI1 99.0 8.2E-09 2.8E-13 99.0 15.6 102 94-198 1-102 (126)
344 2qfc_A PLCR protein; TPR, HTH, 99.0 3.6E-08 1.2E-12 110.1 23.1 174 354-528 75-266 (293)
345 3sz7_A HSC70 cochaperone (SGT) 99.0 5.8E-09 2E-13 105.4 14.7 114 350-465 7-120 (164)
346 1dce_A Protein (RAB geranylger 99.0 1.2E-09 4.2E-14 133.4 11.1 171 328-515 45-242 (567)
347 1dce_A Protein (RAB geranylger 99.0 1.8E-08 6.1E-13 123.1 21.1 169 369-545 44-238 (567)
348 3sz7_A HSC70 cochaperone (SGT) 99.0 1.2E-08 4E-13 103.2 16.4 108 92-202 6-113 (164)
349 3u3w_A Transcriptional activat 98.9 3.2E-08 1.1E-12 110.5 21.3 175 354-529 75-267 (293)
350 3v4m_A Splicing factor U2AF 65 98.9 1.7E-09 5.7E-14 100.4 8.9 80 1030-1110 4-96 (105)
351 1elw_A TPR1-domain of HOP; HOP 98.9 2E-08 6.7E-13 93.9 16.5 113 354-468 4-116 (118)
352 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.5E-08 5.2E-13 106.6 17.3 129 357-490 9-153 (213)
353 3q49_B STIP1 homology and U bo 98.9 2.1E-08 7.2E-13 97.3 17.0 123 91-216 3-127 (137)
354 2fbn_A 70 kDa peptidylprolyl i 98.9 3E-09 1E-13 111.3 11.4 133 351-485 35-184 (198)
355 3tyt_A Heterogeneous nuclear r 98.9 1.2E-09 4E-14 115.1 8.2 69 1030-1101 122-193 (205)
356 4f3v_A ESX-1 secretion system 98.9 2.6E-09 8.9E-14 116.8 11.1 192 366-568 18-240 (282)
357 1jmt_A Splicing factor U2AF 35 98.9 5E-10 1.7E-14 103.8 4.4 71 1036-1108 20-103 (104)
358 3sde_A Paraspeckle component 1 98.9 2.1E-09 7.3E-14 118.0 10.1 81 1030-1112 95-180 (261)
359 2c2l_A CHIP, carboxy terminus 98.9 9.8E-09 3.3E-13 114.1 15.6 167 385-568 1-167 (281)
360 2lni_A Stress-induced-phosphop 98.9 1.1E-08 3.8E-13 98.2 14.1 121 92-218 11-131 (133)
361 2ghp_A U4/U6 snRNA-associated 98.9 2E-09 6.9E-14 120.4 9.9 80 1028-1110 38-117 (292)
362 3mv2_B Coatomer subunit epsilo 98.9 7.8E-08 2.7E-12 106.4 22.4 205 331-565 85-305 (310)
363 2vyi_A SGTA protein; chaperone 98.9 1.2E-08 4.2E-13 97.2 14.0 124 91-220 6-129 (131)
364 1na0_A Designed protein CTPR3; 98.9 3.7E-08 1.3E-12 93.0 16.9 116 354-471 9-124 (125)
365 2adc_A Polypyrimidine tract-bi 98.9 2.7E-09 9.3E-14 114.7 9.8 76 1030-1111 150-228 (229)
366 3ue2_A Poly(U)-binding-splicin 98.9 4.3E-09 1.5E-13 99.6 9.8 79 1030-1109 19-107 (118)
367 1qm9_A Polypyrimidine tract-bi 98.9 1.8E-09 6.2E-14 113.2 7.7 76 1030-1111 119-197 (198)
368 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 4.3E-09 1.5E-13 125.7 11.6 128 349-478 263-405 (457)
369 1hxi_A PEX5, peroxisome target 98.9 1.2E-08 4.1E-13 97.7 12.4 102 355-458 18-119 (121)
370 2kck_A TPR repeat; tetratricop 98.9 8.6E-09 2.9E-13 95.5 11.2 107 92-201 1-110 (112)
371 2fbn_A 70 kDa peptidylprolyl i 98.9 4.1E-09 1.4E-13 110.2 9.8 144 367-519 17-176 (198)
372 1na0_A Designed protein CTPR3; 98.9 7.3E-08 2.5E-12 90.9 17.3 117 92-214 3-120 (125)
373 3gw4_A Uncharacterized protein 98.9 5E-08 1.7E-12 101.5 17.5 162 366-529 4-177 (203)
374 3q49_B STIP1 homology and U bo 98.9 2E-08 6.9E-13 97.4 13.4 103 385-489 6-108 (137)
375 3rjv_A Putative SEL1 repeat pr 98.9 6.6E-08 2.3E-12 102.4 18.4 181 372-566 4-198 (212)
376 1elw_A TPR1-domain of HOP; HOP 98.8 5.8E-08 2E-12 90.6 16.0 113 96-214 3-115 (118)
377 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 4.9E-09 1.7E-13 125.1 10.6 150 77-232 248-413 (457)
378 1hxi_A PEX5, peroxisome target 98.8 1.5E-08 5.3E-13 96.9 11.7 98 99-199 19-116 (121)
379 2dba_A Smooth muscle cell asso 98.8 3.5E-08 1.2E-12 96.8 14.5 120 349-470 23-145 (148)
380 4gcn_A Protein STI-1; structur 98.8 5.4E-08 1.8E-12 93.9 14.8 116 422-540 7-123 (127)
381 2hr2_A Hypothetical protein; a 98.8 4.5E-08 1.5E-12 97.1 14.3 110 353-491 10-135 (159)
382 2dba_A Smooth muscle cell asso 98.8 9.8E-08 3.4E-12 93.5 17.0 117 420-544 25-144 (148)
383 3rkv_A Putative peptidylprolyl 98.8 5.7E-08 2E-12 97.8 13.4 103 354-458 11-131 (162)
384 4gcn_A Protein STI-1; structur 98.8 1.5E-07 5.2E-12 90.7 15.9 100 354-455 8-114 (127)
385 2if4_A ATFKBP42; FKBP-like, al 98.7 3.3E-09 1.1E-13 121.3 4.4 156 353-533 178-333 (338)
386 3rkv_A Putative peptidylprolyl 98.7 4E-08 1.4E-12 98.9 11.9 102 388-490 11-129 (162)
387 1elr_A TPR2A-domain of HOP; HO 98.7 1.2E-07 4.1E-12 90.3 14.7 114 353-469 3-123 (131)
388 3mv2_B Coatomer subunit epsilo 98.7 4E-07 1.4E-11 100.7 20.6 199 353-570 70-287 (310)
389 3tht_A Alkylated DNA repair pr 98.7 1.7E-08 5.7E-13 113.2 9.5 73 1029-1108 16-96 (345)
390 2kck_A TPR repeat; tetratricop 98.7 5.7E-08 1.9E-12 89.9 11.0 95 354-449 6-103 (112)
391 2if4_A ATFKBP42; FKBP-like, al 98.7 1.9E-08 6.6E-13 114.9 9.4 100 389-490 231-331 (338)
392 2hr2_A Hypothetical protein; a 98.7 6.4E-08 2.2E-12 96.0 11.8 73 355-428 58-141 (159)
393 1zu2_A Mitochondrial import re 98.7 5.3E-08 1.8E-12 96.4 10.9 95 77-171 16-129 (158)
394 3ro3_A PINS homolog, G-protein 98.7 2.6E-07 8.9E-12 91.3 16.2 139 390-530 11-160 (164)
395 2xev_A YBGF; tetratricopeptide 98.7 2.9E-07 9.8E-12 88.1 15.9 110 357-468 5-120 (129)
396 1wao_1 Serine/threonine protei 98.7 1.7E-08 5.9E-13 121.0 8.7 133 356-490 8-153 (477)
397 3k9i_A BH0479 protein; putativ 98.7 4.5E-08 1.5E-12 92.7 9.9 93 77-171 4-99 (117)
398 2xev_A YBGF; tetratricopeptide 98.7 2.6E-07 8.8E-12 88.4 15.1 113 426-543 5-120 (129)
399 1elr_A TPR2A-domain of HOP; HO 98.7 1.9E-07 6.5E-12 88.9 14.0 115 96-217 3-124 (131)
400 2qfc_A PLCR protein; TPR, HTH, 98.7 2E-06 6.9E-11 95.7 23.5 171 388-564 75-265 (293)
401 1wao_1 Serine/threonine protei 98.7 6.6E-08 2.3E-12 115.9 12.0 121 69-192 12-134 (477)
402 3gw4_A Uncharacterized protein 98.6 2.9E-07 9.8E-12 95.6 14.2 138 352-490 24-179 (203)
403 3s6e_A RNA-binding protein 39; 98.6 1.2E-07 4E-12 89.1 9.9 75 1030-1109 6-91 (114)
404 1ihg_A Cyclophilin 40; ppiase 98.6 2E-07 6.8E-12 107.8 14.0 117 355-473 224-356 (370)
405 2dnr_A Synaptojanin-1; RRM dom 98.6 1.1E-07 3.9E-12 83.1 8.9 75 1030-1113 6-88 (91)
406 3u3w_A Transcriptional activat 98.6 8.2E-07 2.8E-11 98.9 18.2 164 320-489 83-268 (293)
407 1zu2_A Mitochondrial import re 98.6 1.3E-07 4.5E-12 93.5 10.0 100 435-542 14-134 (158)
408 1ihg_A Cyclophilin 40; ppiase 98.6 5.3E-07 1.8E-11 104.2 16.3 125 388-520 223-362 (370)
409 3k9i_A BH0479 protein; putativ 98.6 2.3E-07 8E-12 87.7 10.8 94 325-427 3-99 (117)
410 1of5_B MTR2, YKL186C, mRNA tra 98.5 1.5E-07 5.1E-12 90.9 8.5 100 719-822 16-121 (184)
411 1owx_A Lupus LA protein, SS-B, 98.5 2.3E-07 7.8E-12 87.0 9.1 74 1027-1107 14-92 (121)
412 2kat_A Uncharacterized protein 98.5 8.5E-07 2.9E-11 83.3 13.2 84 80-165 2-85 (115)
413 4b4t_Q 26S proteasome regulato 98.5 1.4E-06 4.9E-11 102.3 17.7 207 322-529 14-246 (434)
414 3ro3_A PINS homolog, G-protein 98.5 1E-06 3.6E-11 86.9 13.7 135 354-489 9-160 (164)
415 2kat_A Uncharacterized protein 98.4 1.4E-06 4.9E-11 81.7 12.1 83 117-200 3-85 (115)
416 4b4t_Q 26S proteasome regulato 98.4 3.2E-05 1.1E-09 90.7 25.7 195 365-564 15-244 (434)
417 1ufw_A Synaptojanin 2; RNP dom 98.3 1.1E-06 3.7E-11 77.3 6.5 72 1030-1110 14-94 (95)
418 1na3_A Designed protein CTPR2; 98.3 5.3E-06 1.8E-10 73.6 10.9 83 94-178 6-88 (91)
419 3ma5_A Tetratricopeptide repea 98.2 1.7E-06 5.8E-11 79.3 7.6 71 92-164 2-72 (100)
420 2l6j_A TPR repeat-containing p 98.2 9.3E-07 3.2E-11 81.8 5.7 91 96-189 3-99 (111)
421 3u64_A Protein TP_0956; tetrat 98.2 9E-05 3.1E-09 79.9 21.0 86 370-456 179-272 (301)
422 1na3_A Designed protein CTPR2; 98.2 1.7E-05 5.9E-10 70.1 12.3 83 353-436 8-90 (91)
423 2l6j_A TPR repeat-containing p 98.2 1.4E-06 4.8E-11 80.6 5.2 91 354-445 4-100 (111)
424 3u64_A Protein TP_0956; tetrat 98.1 3E-05 1E-09 83.6 14.3 121 92-213 147-285 (301)
425 2kc7_A BFR218_protein; tetratr 98.1 9E-06 3.1E-10 73.7 8.8 90 101-201 4-94 (99)
426 3ma5_A Tetratricopeptide repea 98.0 1.2E-05 4.3E-10 73.4 8.9 71 128-199 2-72 (100)
427 3dxb_A Thioredoxin N-terminall 98.0 9.9E-06 3.4E-10 86.2 7.6 66 1044-1109 142-211 (222)
428 2kc7_A BFR218_protein; tetratr 97.9 2E-05 6.8E-10 71.4 8.4 88 393-490 5-93 (99)
429 3n71_A Histone lysine methyltr 97.9 6.4E-05 2.2E-09 89.5 14.2 137 398-536 319-472 (490)
430 3bee_A Putative YFRE protein; 97.9 5E-05 1.7E-09 68.4 9.3 78 93-172 2-80 (93)
431 3esl_A Checkpoint serine/threo 97.9 0.00047 1.6E-08 70.0 17.2 133 113-249 6-159 (202)
432 1klx_A Cysteine rich protein B 97.7 0.00043 1.5E-08 67.3 14.2 111 368-488 9-127 (138)
433 4g26_A Pentatricopeptide repea 97.7 0.0017 5.9E-08 77.6 21.9 166 356-528 28-204 (501)
434 3ly7_A Transcriptional activat 97.6 0.00052 1.8E-08 77.2 15.2 136 352-490 192-342 (372)
435 3ly7_A Transcriptional activat 97.6 0.0015 5.1E-08 73.5 18.3 153 86-243 183-348 (372)
436 1klx_A Cysteine rich protein B 97.6 0.001 3.5E-08 64.5 14.7 109 325-450 8-124 (138)
437 3bee_A Putative YFRE protein; 97.6 0.00054 1.8E-08 61.6 11.3 72 129-201 2-76 (93)
438 3esl_A Checkpoint serine/threo 97.5 0.0019 6.4E-08 65.6 16.1 97 352-449 28-141 (202)
439 3n71_A Histone lysine methyltr 97.5 0.00051 1.7E-08 81.7 13.8 97 322-418 319-423 (490)
440 4a1g_A Mitotic checkpoint seri 97.5 0.0011 3.6E-08 64.6 13.2 125 115-249 6-145 (152)
441 4aez_C MAD3, mitotic spindle c 97.5 0.0013 4.4E-08 68.0 13.8 124 114-246 50-194 (223)
442 1pc2_A Mitochondria fission pr 97.4 0.0013 4.5E-08 64.2 11.8 97 370-467 14-114 (152)
443 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0021 7.1E-08 59.0 12.7 86 458-544 5-91 (104)
444 4a1g_A Mitotic checkpoint seri 97.3 0.0027 9.2E-08 61.7 13.1 103 334-449 12-127 (152)
445 1pc2_A Mitochondria fission pr 97.3 0.0015 5.3E-08 63.7 11.4 92 78-169 13-107 (152)
446 4aez_C MAD3, mitotic spindle c 97.3 0.0038 1.3E-07 64.4 14.9 92 352-449 70-176 (223)
447 4g26_A Pentatricopeptide repea 97.3 0.0067 2.3E-07 72.6 19.2 161 320-488 34-205 (501)
448 2l9w_A U4/U6 snRNA-associated- 97.3 0.00097 3.3E-08 59.7 8.6 71 1030-1107 20-96 (117)
449 2wvi_A Mitotic checkpoint seri 97.2 0.0035 1.2E-07 61.8 12.6 104 334-449 5-122 (164)
450 2wvi_A Mitotic checkpoint seri 97.1 0.0032 1.1E-07 62.1 11.8 118 120-246 4-140 (164)
451 3qww_A SET and MYND domain-con 96.9 0.0047 1.6E-07 72.2 13.2 91 436-528 311-411 (433)
452 2v5f_A Prolyl 4-hydroxylase su 96.7 0.014 4.8E-07 53.3 11.5 75 389-464 6-86 (104)
453 2dhx_A Poly (ADP-ribose) polym 96.7 0.011 3.6E-07 52.8 9.9 74 1030-1112 7-85 (104)
454 3qww_A SET and MYND domain-con 96.6 0.025 8.5E-07 66.0 15.7 92 327-418 313-412 (433)
455 3qwp_A SET and MYND domain-con 96.5 0.02 6.8E-07 66.9 14.5 98 322-419 297-402 (429)
456 3qwp_A SET and MYND domain-con 96.5 0.018 6.2E-07 67.3 14.0 92 435-528 299-400 (429)
457 1nzn_A CGI-135 protein, fissio 95.6 0.092 3.2E-06 49.3 11.4 98 369-467 16-117 (126)
458 1wwh_A Nucleoporin 35, nucleop 94.9 0.072 2.5E-06 49.1 8.1 70 1030-1107 23-93 (119)
459 3txn_A 26S proteasome regulato 94.8 0.71 2.4E-05 52.6 17.9 171 358-530 23-212 (394)
460 3p3d_A Nucleoporin 53; structu 94.6 0.049 1.7E-06 50.9 6.1 76 1032-1109 8-97 (132)
461 1nzn_A CGI-135 protein, fissio 94.3 0.14 4.7E-06 48.1 8.5 89 81-169 19-110 (126)
462 1whv_A Poly(A)-specific ribonu 94.2 0.14 4.7E-06 45.1 7.5 52 1032-1093 17-68 (100)
463 3txn_A 26S proteasome regulato 93.5 1.5 5.3E-05 49.8 17.0 176 311-489 18-212 (394)
464 3hx8_A MLR2180 protein, putati 93.2 0.4 1.4E-05 44.9 10.1 110 723-834 9-124 (129)
465 1uw4_A UPF3X; nonsense mediate 93.0 0.48 1.7E-05 41.6 9.1 68 1032-1100 2-72 (91)
466 4i4k_A Uncharacterized protein 92.9 0.51 1.8E-05 45.5 10.5 109 722-831 21-135 (143)
467 1wey_A Calcipressin 1; structu 92.6 0.24 8.1E-06 44.4 6.7 74 1031-1111 5-84 (104)
468 3mkq_A Coatomer beta'-subunit; 91.9 2.6 8.8E-05 52.9 18.1 130 358-525 633-762 (814)
469 3ffl_A Anaphase-promoting comp 91.5 1.3 4.5E-05 43.4 11.1 113 358-483 24-147 (167)
470 3mkq_B Coatomer subunit alpha; 91.4 2.2 7.6E-05 42.5 12.9 110 95-231 6-115 (177)
471 3gzr_A Uncharacterized protein 91.4 1.5 5.2E-05 42.4 11.7 115 723-837 9-131 (146)
472 3mkq_B Coatomer subunit alpha; 91.4 5.3 0.00018 39.7 15.6 99 365-483 16-114 (177)
473 3o48_A Mitochondria fission 1 91.3 1.8 6.1E-05 40.7 11.3 80 387-467 39-121 (134)
474 3o48_A Mitochondria fission 1 91.2 1.4 4.8E-05 41.4 10.6 91 79-169 19-114 (134)
475 1y8m_A FIS1; mitochondria, unk 91.0 2.2 7.6E-05 40.6 11.8 91 79-169 18-113 (144)
476 3ctr_A Poly(A)-specific ribonu 90.7 0.22 7.5E-06 44.0 4.2 52 1033-1093 7-58 (101)
477 4gns_B Protein CSD3, chitin bi 90.6 1.2 4.2E-05 54.9 12.4 124 360-484 254-397 (754)
478 3d9r_A Ketosteroid isomerase-l 90.5 0.79 2.7E-05 43.2 8.7 110 722-836 13-133 (135)
479 3pq1_A Poly(A) RNA polymerase; 90.5 0.14 4.9E-06 59.1 3.8 64 1030-1100 52-115 (464)
480 3ffl_A Anaphase-promoting comp 89.7 3.7 0.00013 40.2 12.4 58 391-449 23-89 (167)
481 3cu3_A Domain of unknown funct 89.3 1.1 3.6E-05 44.7 8.9 114 722-835 18-137 (172)
482 3mkq_A Coatomer beta'-subunit; 89.2 3.3 0.00011 52.0 15.5 101 322-449 662-762 (814)
483 1y8m_A FIS1; mitochondria, unk 88.9 2.7 9.4E-05 40.0 10.6 80 385-465 36-118 (144)
484 2ff4_A Probable regulatory pro 88.4 4.9 0.00017 45.8 14.8 83 113-196 129-233 (388)
485 3gwr_A Putative calcium/calmod 87.1 2.2 7.6E-05 41.1 9.2 113 723-836 11-128 (144)
486 4b4t_S RPN3, 26S proteasome re 86.8 3.6 0.00012 48.1 12.1 169 422-611 180-373 (523)
487 4b4t_P 26S proteasome regulato 86.4 24 0.00081 40.9 19.2 105 423-528 137-247 (445)
488 4gns_B Protein CSD3, chitin bi 84.5 5.1 0.00018 49.4 12.7 54 136-190 340-393 (754)
489 2l08_A Regulator of nonsense t 84.4 1.7 5.7E-05 38.5 6.0 77 1031-1108 9-93 (97)
490 3h51_A Putative calcium/calmod 83.9 14 0.00048 35.6 13.4 111 720-837 20-141 (156)
491 4b4t_R RPN7, 26S proteasome re 82.8 3.6 0.00012 47.7 10.0 100 389-488 132-238 (429)
492 2ff4_A Probable regulatory pro 81.9 3.7 0.00013 46.8 9.5 60 357-416 174-233 (388)
493 4b4t_R RPN7, 26S proteasome re 81.4 7.9 0.00027 44.7 12.2 96 355-450 132-235 (429)
494 1qsa_A Protein (soluble lytic 81.3 1E+02 0.0035 37.1 40.1 205 326-546 228-481 (618)
495 1zbp_A Hypothetical protein VP 80.6 22 0.00076 37.6 13.9 114 395-532 4-133 (273)
496 3b7c_A Uncharacterized protein 77.9 10 0.00035 34.9 9.5 103 724-832 9-119 (122)
497 3spa_A Mtrpol, DNA-directed RN 77.9 14 0.00046 46.9 13.0 99 133-234 127-230 (1134)
498 3spa_A Mtrpol, DNA-directed RN 77.4 16 0.00055 46.3 13.5 95 355-449 128-227 (1134)
499 3fka_A Uncharacterized NTF-2 l 74.2 15 0.00053 33.8 9.6 101 724-835 13-119 (120)
500 2rcd_A Uncharacterized protein 73.6 22 0.00074 33.0 10.7 110 720-834 15-125 (129)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=7.4e-50 Score=494.72 Aligned_cols=483 Identities=14% Similarity=0.195 Sum_probs=396.3
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHHHH
Q 001064 79 MSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS---MDKVVEV 155 (1167)
Q Consensus 79 ~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~---~e~A~~l 155 (1167)
....+..|++.|..||.|++.|..|++.+.+ .++++.+|.+|+++|..||.+..+|++|+++|.+.++ +++++++
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~--~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVS--LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 3456789999999999999999999999987 3789999999999999999999999999999999999 9999999
Q ss_pred HHHHHhccC--CCHHHHHHHHHHHHhhcCC-------HHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHH---------
Q 001064 156 YERAVQGVT--YSVDIWLHYCIFAINTYGD-------PETIRRLFERGLAYVGT-DYLSFPLWDKYIEYEY--------- 216 (1167)
Q Consensus 156 ~eraL~~~P--~s~~lw~~ya~~~~~~~~~-------~~~Ar~~feral~~~g~-d~~s~~lw~~y~~~e~--------- 216 (1167)
|+|||..+| .+++||..|++|.....+. .+.+|++|++||..+|. |+.+..||..|+.|+.
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999999995 8999999999999854322 25577999999999999 9999999999999987
Q ss_pred HhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccc
Q 001064 217 MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQ 296 (1167)
Q Consensus 217 ~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~ 296 (1167)
++++++++|.+|+|+|.+|..+++.+|..|..|+.... .. ...
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~--~~-~a~---------------------------------- 248 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN--QL-TAR---------------------------------- 248 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC--TT-THH----------------------------------
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC--cc-hHH----------------------------------
Confidence 35678999999999999999999999999998865311 00 000
Q ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc------------CCCChhhHHHHHHHHHHH
Q 001064 297 TSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHV------------KPLSVTELENWHNYLDFI 364 (1167)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v------------~pld~~~~~~W~~y~~~~ 364 (1167)
+.+..+...|..+......+..+.+.|.|.+.+. .+.+..++.+|..|++|+
T Consensus 249 ----------------~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fE 312 (679)
T 4e6h_A 249 ----------------RHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWE 312 (679)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHH
Confidence 0111111122222222222333555666543332 113557789999999998
Q ss_pred HHcC-------ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 365 ERDG-------DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAH-NALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 365 e~~g-------~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~-~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
+..+ ..++++.+|++||..||+++++|+.|+.++...|+.++|+ .+|++|+..+ |++..+|+.++.++++.
T Consensus 313 k~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 313 SDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELN 391 (679)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 7654 2467889999999999999999999999999999999996 9999999877 78999999999999999
Q ss_pred CCHHHHHHHHHHHhhhc----------CCC-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccC
Q 001064 437 GDIDGARAAYQLVHTET----------SPG-----------LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQ 495 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~----------~P~-----------~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~ 495 (1167)
|++++|+.+|++++..+ .|. ...+|+.++.++.|.|++++|+.+|.+|++..+.
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~----- 466 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL----- 466 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-----
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----
Confidence 99999999999984322 253 4568999999999999999999999999998321
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCH
Q 001064 496 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANA 575 (1167)
Q Consensus 496 ~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~ 575 (1167)
..+.+|+.++.++++..++.+.||++|+++|+.+|++..+|..|+.|+...++ ++.+|.+|++++...++ +
T Consensus 467 ~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~---~~~AR~lferal~~~~~------~ 537 (679)
T 4e6h_A 467 VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE---ESQVKSLFESSIDKISD------S 537 (679)
T ss_dssp SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHTTTSSS------T
T ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcCC------H
Confidence 12568999999998855569999999999999999999999999999999876 67899999999987643 3
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCC
Q 001064 576 AEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGA 641 (1167)
Q Consensus 576 ~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~ 641 (1167)
+++..+|..|++||..+||++++.+|++|+.+++|+.. + .....+||++.+..+|.
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~------~----~~~f~~ry~~~~~~~i~ 593 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN------K----LEEFTNKYKVLDVNYLQ 593 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC------H----HHHHHHHTCBTTBCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc------H----HHHHHHHhcCCcchhHH
Confidence 56789999999999999999999999999999999741 1 23347888888776654
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=6.2e-48 Score=473.78 Aligned_cols=479 Identities=22% Similarity=0.363 Sum_probs=396.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001064 86 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 165 (1167)
Q Consensus 86 l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 165 (1167)
|+++|+.||.|+++|..|+... + .+++++|+.+|+++|+.+|.+..+|+.|+.++.+.|++++|+++|+|||..+|
T Consensus 2 le~al~~~P~~~~~w~~l~~~~-~--~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p- 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIREA-Q--NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL- 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH-H--SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-
T ss_pred hhhHhhhCCCCHHHHHHHHHHH-H--hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Confidence 6789999999999999999963 3 47999999999999999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHhhcCCHHHHHH----HHHHHHHhcCCCCCCHHHHHHHHHHHHH---------hhhHHHHHHHHHHHH
Q 001064 166 SVDIWLHYCIFAINTYGDPETIRR----LFERGLAYVGTDYLSFPLWDKYIEYEYM---------QQEWSRVAMIYTRIL 232 (1167)
Q Consensus 166 s~~lw~~ya~~~~~~~~~~~~Ar~----~feral~~~g~d~~s~~lw~~y~~~e~~---------~~~~~~A~~iy~r~l 232 (1167)
++++|+.|+.++.+..++++.|++ +|++++..+|.++.+..+|..|+.|+.. ++++++|+.+|+++|
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 799999999998877787776654 9999999999999999999999999987 789999999999999
Q ss_pred hcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHH
Q 001064 233 ENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELE 312 (1167)
Q Consensus 233 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~ 312 (1167)
++|..+...+|..|..|...... .. . .
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-------~~---~-------------------------------------------~ 184 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-------HL---A-------------------------------------------K 184 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-------HH---H-------------------------------------------H
T ss_pred hchhhhHHHHHHHHHHHHHhhch-------hH---H-------------------------------------------H
Confidence 99888888888888776432110 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCC----hhhHHHHHHHHHHHHHcC----Ch----HHHHHHHHHH
Q 001064 313 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLS----VTELENWHNYLDFIERDG----DF----NKVVKLYERC 380 (1167)
Q Consensus 313 ~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld----~~~~~~W~~y~~~~e~~g----~~----~~a~~~yera 380 (1167)
+++..+...|..+....+.+..+.+++++...++.|.. ..+..+|..|+.|+.... +. .+++.+|++|
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 01100001111111111112223346665544444432 355789999999987642 33 4889999999
Q ss_pred HHhcCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 381 LIACANYPEYWIRYVLCMEA-------SGSMD-------LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 381 l~~~p~~~~~w~~ya~~l~~-------~g~~e-------~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
|..+|+++++|+.|+.++.. .|+++ +|+.+|++|++...|++..+|+.++.++++.|++++|+.+|
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999986 68887 99999999997333899999999999999999999999999
Q ss_pred HHHhhhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 447 QLVHTETSPGLL-EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDS 525 (1167)
Q Consensus 447 ~~a~~~~~P~~~-~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~ka 525 (1167)
+++ +++.|++. .+|+.++.++.+.|++++|+.+|++|++..+. ...++...+.+++...|++++|+++|+++
T Consensus 345 ~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 345 NRL-LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHH-HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHH-hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------chHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 998 78899875 69999999999999999999999999998653 24466666666665689999999999999
Q ss_pred HhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 001064 526 LDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRH 605 (1167)
Q Consensus 526 l~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~ 605 (1167)
|+.+|++..+|..|+.|+...++ .+.+|.+|++++...+.+ ++.+..+|..|+.||..+||.+++.++.+|+
T Consensus 418 l~~~p~~~~~~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~~-----~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 418 LKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGSLP-----PEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHSCCSC-----GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHhCCC---HhhHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999998876 677999999999976543 3466789999999999999999999999999
Q ss_pred HhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCCC
Q 001064 606 ARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPS 643 (1167)
Q Consensus 606 ~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~~ 643 (1167)
.+.+|. +.+++ +....+||||+++++||+++
T Consensus 490 ~~~~p~-----~~~~~--~~~~~~~r~~~~~~~~~~~~ 520 (530)
T 2ooe_A 490 FTAFRE-----EYEGK--ETALLVDRYKFMDLYPCSAS 520 (530)
T ss_dssp HHHTHH-----HHTTC--HHHHHGGGTCBTTBCSSCHH
T ss_pred HHHCch-----hccCc--hHHHHHHHHHhcccCCCCHH
Confidence 999984 34444 46778999999999999985
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=100.00 E-value=5.4e-38 Score=378.97 Aligned_cols=429 Identities=14% Similarity=0.126 Sum_probs=325.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFER 193 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fer 193 (1167)
+++.||.+|++++..+|. +++++++.||+|||..+| +++||..|++|........+.++.+|++
T Consensus 10 ~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp --CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred chHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 589999999999999998 789999999999999887 9999999999999544456789999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHH----HhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 194 GLAYVGTDYLSFPLWDKYIEYEY----MQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 194 al~~~g~d~~s~~lw~~y~~~e~----~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
|+..+|.|+.++.||..|+.|+. +++++++++.+|+|+|.+|+.+.+.+|..|..|+...... +
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~---~--------- 141 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKI---T--------- 141 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHH---H---------
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccc---c---------
Confidence 99999999999999999999976 4678999999999999999999999999998885432100 0
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
..+.+.. ....+..++..|+.+... .
T Consensus 142 -----------------------------------------~~~~~~~------~~~~y~~ar~~y~~~~~~-------~ 167 (493)
T 2uy1_A 142 -----------------------------------------GKKIVGD------TLPIFQSSFQRYQQIQPL-------I 167 (493)
T ss_dssp -----------------------------------------HHHHHHH------HHHHHHHHHHHHHHHHHH-------H
T ss_pred -----------------------------------------HHHHHHH------HhHHHHHHHHHHHHHHHH-------H
Confidence 0001111 112333344444444320 0
Q ss_pred ChhhHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC
Q 001064 350 SVTELENWHNYLDFIERDGD-------FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL 422 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~-------~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~ 422 (1167)
...+..+|..|++|++..+. .+++..+|++||..+|+++++|+.|+.++...|+.+.|+.+|+||+.. |.+
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 11145789999999875321 467899999999999999999999999999999999999999999998 778
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHh-hh-------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVH-TE-------TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS 494 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~-~~-------~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~ 494 (1167)
..+|+.++.+++. ++. -..++++.. .+ ..+....+|+.|+.++.+.+++++|+.+|++| . .+.
T Consensus 246 ~~l~~~y~~~~e~-~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---- 316 (493)
T 2uy1_A 246 MFLSLYYGLVMDE-EAV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG---- 316 (493)
T ss_dssp SHHHHHHHHHTTC-THH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC----
T ss_pred HHHHHHHHhhcch-hHH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC----
Confidence 8999998887431 111 112222210 00 11224478999999999999999999999999 3 332
Q ss_pred CchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCC
Q 001064 495 QTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTAN 574 (1167)
Q Consensus 495 ~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~ 574 (1167)
....+|+.++.+++...++.+.||.+|+++++..|+++.+|..|++|+...++ .+.+|.+|+++..
T Consensus 317 -~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~---~~~aR~l~er~~k---------- 382 (493)
T 2uy1_A 317 -VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD---EENARALFKRLEK---------- 382 (493)
T ss_dssp -CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHSCC----------
T ss_pred -CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH----------
Confidence 12568999999999855679999999999999999999999999999998876 6679999999832
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCC----CCC-chhhhhc-chhhh---hcchHHHhhhcCCCCCC-C
Q 001064 575 AAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLP----HRS-TSELRKR-HAEDF---LASERAKMAKSYSGAPS-P 644 (1167)
Q Consensus 575 ~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~----~~~-~~~~~kr-~~~~~---~~~~~~k~~~~~~~~~~-~ 644 (1167)
+..+|..|++||..+||.++++++++|..+.+.. .+. ..+.=.. -...+ ..++||.++++.||+++ .
T Consensus 383 ---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~~~~~~~~~~ 459 (493)
T 2uy1_A 383 ---TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRDNSRL 459 (493)
T ss_dssp ---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTTBCCCCTTCC
T ss_pred ---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhccccCCccch
Confidence 2579999999999999999999999999887752 111 0000000 01122 35789999999999976 5
Q ss_pred ccccccCC
Q 001064 645 AQSLMGAY 652 (1167)
Q Consensus 645 ~~~~~~~~ 652 (1167)
.+.-+...
T Consensus 460 ~~~~~~~~ 467 (493)
T 2uy1_A 460 LDEFMENL 467 (493)
T ss_dssp CTTTTC--
T ss_pred HHHHHHhc
Confidence 56655543
No 4
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=1.7e-31 Score=327.50 Aligned_cols=416 Identities=16% Similarity=0.246 Sum_probs=319.0
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHH
Q 001064 76 GSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEA-RVGSMDKVVE 154 (1167)
Q Consensus 76 ~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~-~~~~~e~A~~ 154 (1167)
.++++.+...|+++++.+|.+...|..++..+.+. +++++|+.+|+++|..+| +..+|+.|+.+.. ..++++.|++
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA--KNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHH
Confidence 48899999999999999999999999999999874 799999999999999999 6889999998765 5577776655
Q ss_pred ----HHHHHHhc---cCCCHHHHHHHHHHHHh--------hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 001064 155 ----VYERAVQG---VTYSVDIWLHYCIFAIN--------TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ 219 (1167)
Q Consensus 155 ----l~eraL~~---~P~s~~lw~~ya~~~~~--------~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~ 219 (1167)
+|+++|.. +|.+..+|..|+.|+.. ..++++.|+.+|+++|. .|.+ ....+|..|..|+...+
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~-~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMI-NIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCT-THHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhh-hHHHHHHHHHHHHHhhc
Confidence 99999875 45789999999999873 15789999999999998 5543 23589999999986544
Q ss_pred -------------hHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccc
Q 001064 220 -------------EWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANE 286 (1167)
Q Consensus 220 -------------~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e 286 (1167)
++..|+.+|... ..+... +......
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~---------------~~~~~~-------------------l~~~~~~-------- 217 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEY---------------ETVMKG-------------------LDRNAPS-------- 217 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHH---------------HHHHHH-------------------CCSSSCC--------
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHH---------------HHHHHH-------------------hcccccc--------
Confidence 233343333321 111000 0000000
Q ss_pred cccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHH
Q 001064 287 EEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK----EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLD 362 (1167)
Q Consensus 287 ~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~----~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~ 362 (1167)
.|+ ............|..++..........+ ....++..|+++|. .+|...++|..|+.
T Consensus 218 ---~~p------~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~--------~~p~~~~~w~~~~~ 280 (530)
T 2ooe_A 218 ---VPP------QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL--------VLGHHPDIWYEAAQ 280 (530)
T ss_dssp ---CCC------C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHH
T ss_pred ---CCC------CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH--------hCCCCHHHHHHHHH
Confidence 000 0000000011233333322110000000 11345667999998 67777899999999
Q ss_pred HHHH-------cCChH-------HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh-HHH
Q 001064 363 FIER-------DGDFN-------KVVKLYERCLI-ACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-EIH 426 (1167)
Q Consensus 363 ~~e~-------~g~~~-------~a~~~yeral~-~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~-~l~ 426 (1167)
++.+ .|+++ +|+.+|++++. .+|.+..+|+.++.++...|++++|+.+|++++++. |.++ .+|
T Consensus 281 ~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 359 (530)
T 2ooe_A 281 YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVY 359 (530)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHH
T ss_pred HHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHH
Confidence 9886 68887 99999999997 799999999999999999999999999999999976 6664 699
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 505 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~-r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a 505 (1167)
+.++.++.+.|++++|+.+|+++ ++..|....+|+..+.++. ..|++++|+.+|+++++..|+ .+.+|..|+
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~A-l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~------~~~~~~~~~ 432 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKA-REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYI 432 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT------CHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC------CHHHHHHHH
Confidence 99999999999999999999999 6778888888877776653 589999999999999999864 378999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhcCCCH----HHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 506 RFLHLVSRNAEKARQILVDSLDHVQLSK----PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 506 ~~~~~~~g~~~~Ar~i~~kal~~~p~~~----~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
.++.. .|++++||.+|+++++..|.++ .+|..|+.||..+|+ .+.+..++.+++...|
T Consensus 433 ~~~~~-~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~---~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 433 DYLSH-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHTT-TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHTH
T ss_pred HHHHh-CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCc
Confidence 99877 9999999999999999877654 599999999999987 4557788888877654
No 5
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=1.9e-30 Score=321.15 Aligned_cols=467 Identities=12% Similarity=0.119 Sum_probs=344.1
Q ss_pred cCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhh---HHHHHHHHHH
Q 001064 48 EAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDN---IVKIRRVYDA 124 (1167)
Q Consensus 48 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~---~~~ar~~ye~ 124 (1167)
.+..+.+....+|.....-+.....+...+.+..+...|+++|...|.....|..++....+. ++ ++.++.+|++
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~--~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK--MEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh--CCcchHHHHHHHHHH
Confidence 344566666667766655444444444446788888999999999999999999999998764 67 9999999999
Q ss_pred HHHhCC--CCHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHhc----cCCCHHHHHHHHHHHHh--------hcC
Q 001064 125 FLAEFP--LCYGYWKKYADHEARVGSM--------DKVVEVYERAVQG----VTYSVDIWLHYCIFAIN--------TYG 182 (1167)
Q Consensus 125 ~l~~~P--~~~~~W~~~a~~e~~~~~~--------e~A~~l~eraL~~----~P~s~~lw~~ya~~~~~--------~~~ 182 (1167)
+|...| .+..+|..|+++..+.++. +.++++|++||.. ++.+..+|..|+.|+.. ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 999994 6889999999999887654 5577999999975 56688999999999872 123
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH---HHHHHHHHHHhcCCCcccc
Q 001064 183 DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD---RYFSSFKEFAASRPLSELR 259 (1167)
Q Consensus 183 ~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~---~~~~~~~~~~~~~~~~~~~ 259 (1167)
+++.+|.+|+|+|. +|.+- ...+|..|..|+...+... ++++.... ...++ ..+.....+.... ....
T Consensus 209 ~~~~~R~iy~raL~-iP~~~-~~~~w~~Y~~fe~~~~~~~-a~~~~~e~----~~~y~~Ar~~~~e~~~~~~~l--~r~~ 279 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC-QPMDC-LESMWQRYTQWEQDVNQLT-ARRHIGEL----SAQYMNARSLYQDWLNITKGL--KRNL 279 (679)
T ss_dssp HHHHHHHHHHHHTT-SCCSS-HHHHHHHHHHHHHHHCTTT-HHHHHHHH----HHHHHHHHHHHHHHHHHTTTC--CCCC
T ss_pred HHHHHHHHHHHHHh-CccHH-HHHHHHHHHHHHHhcCcch-HHHHHHHh----hHHHHHHHHHHHHHHHHHHhH--hhcc
Confidence 57889999999996 66542 4589999999998753321 22222111 11122 2222333322211 1100
Q ss_pred cHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 001064 260 TAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMY---KKAKEFDSKIIGFE 336 (1167)
Q Consensus 260 ~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y---~~~~~~~~a~~~~e 336 (1167)
. ....+... .. .|. ...........|.+|+......- .........+..|+
T Consensus 280 p------------~~~~~~~~--~~-----~p~-------~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye 333 (679)
T 4e6h_A 280 P------------ITLNQATE--SN-----LPK-------PNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYM 333 (679)
T ss_dssp C------------SSSTTCCT--TT-----SCC-------TTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred c------------cccccchh--cc-----CCC-------CchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 0 00000000 00 000 00001122456667765532100 00011233456799
Q ss_pred hhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 337 TAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVV-KLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 415 (1167)
Q Consensus 337 ~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~-~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~ 415 (1167)
++|. ..|...++|..|+.|++..|+.++|+ .+|++|+..||....+|+.|+.+++..|+++.|+.+|++++
T Consensus 334 ~aL~--------~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 334 QAAQ--------HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHH--------HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH--------HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9998 55667899999999999999999996 99999999999999999999999999999999999999999
Q ss_pred Hhhh----------c-----------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-CCChHHHHHHHHHHHHHcCC
Q 001064 416 HVFV----------K-----------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTET-SPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 416 ~~~~----------p-----------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~-~P~~~~~~~~~a~~e~r~g~ 473 (1167)
...+ | ....+|+.++.++.+.|+++.||++|.++ ++. .+....+|+.++.+|.+.++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A-~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC-RRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHhCC
Confidence 8641 2 24569999999999999999999999999 444 44457889999999988765
Q ss_pred -HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC---CCHHHHHHHHHhHhhCCCh
Q 001064 474 -LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ---LSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 474 -~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p---~~~~l~~~~~~~e~~~~~~ 549 (1167)
.++|+.+|+++|+..+. .+.+|..|++|+.. .|+.+.||.+|++|++..| ....+|..|+.||...|+.
T Consensus 485 d~e~Ar~ife~~Lk~~p~------~~~~w~~y~~fe~~-~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFAT------DGEYINKYLDFLIY-VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp CCHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHH-HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 89999999999999864 37799999999887 8999999999999999988 4679999999999999984
Q ss_pred hHHHHHHHHHHHHhhcCCCCC
Q 001064 550 KQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 550 ~~~~~ar~l~eral~~~~~~~ 570 (1167)
+.++++++|++...|+++
T Consensus 558 ---~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 558 ---NSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp ---HHHHHHHHHHHHHSTTCC
T ss_pred ---HHHHHHHHHHHHhCCCCc
Confidence 458999999999988765
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.3e-30 Score=301.26 Aligned_cols=376 Identities=14% Similarity=0.162 Sum_probs=339.9
Q ss_pred ccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001064 74 VDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 74 ~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
...|++++++..++++++.+|++..+|..++..+... +++++|...++++++.+|.+...|..++.++.+.|++++|+
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 3348999999999999999999999999999998874 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 154 EVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
.+|++++...|.+.+.|..++..+. ..|++++|+..|++++...|. ...+|..++.+....|++++|..+|++++.
T Consensus 88 ~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 88 EHYRHALRLKPDFIDGYINLAAALV-AAGDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999988 689999999999999996554 578899999999999999999999999998
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
..+.+...++..
T Consensus 164 ~~p~~~~~~~~l-------------------------------------------------------------------- 175 (388)
T 1w3b_A 164 TQPNFAVAWSNL-------------------------------------------------------------------- 175 (388)
T ss_dssp HCTTCHHHHHHH--------------------------------------------------------------------
T ss_pred hCCCCHHHHHHH--------------------------------------------------------------------
Confidence 766654433321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 393 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ 393 (1167)
..+|...+++++|+..|+++++ ++|.....|..++..+...|++++|+..|++++...|.+..+|..
T Consensus 176 -----~~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 176 -----GCVFNAQGEIWLAIHHFEKAVT--------LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp -----HHHHHTTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----HHHHHHcCCHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 2245556677888888999998 778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
++.++...|++++|+..|++++++. |+++.+|..++.++.+.|++++|+.+|+++ +++.|++..+|..++.++.+.|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTA-LRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCcccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987 889999999999999999999999999998 78899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 474 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 474 ~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
+++|+.+|+++++..|+ .+.++..++..+.. .|++++|+.+|+++++..|++...|..+......
T Consensus 321 ~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 321 IEEAVRLYRKALEVFPE------FAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHHHTTSCTT------CHHHHHHHHHHHHT-TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence 99999999999998753 36788899988776 9999999999999999999999888766655433
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.8e-28 Score=281.59 Aligned_cols=369 Identities=12% Similarity=0.067 Sum_probs=329.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcC
Q 001064 103 LLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYG 182 (1167)
Q Consensus 103 L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~ 182 (1167)
++..+.+ .|++++|+..|++++...|++..+|..++.++...+++++|+..+++++...|.+...|...+..+. ..|
T Consensus 5 ~a~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~-~~g 81 (388)
T 1w3b_A 5 LAHREYQ--AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERG 81 (388)
T ss_dssp HHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCC
Confidence 3444444 4899999999999999999999999999999999999999999999999999999999999999998 689
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHH
Q 001064 183 DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 262 (1167)
Q Consensus 183 ~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e 262 (1167)
++++|+..|++++...|. ....|..++......|+++.|...|+++++..|.+...+.
T Consensus 82 ~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------------- 139 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS------------------- 139 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHH-------------------
T ss_pred CHHHHHHHHHHHHHcCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-------------------
Confidence 999999999999996554 4678999999999999999999999999887665433222
Q ss_pred HHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001064 263 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 342 (1167)
Q Consensus 263 e~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~ 342 (1167)
.+..++...+++++|+..|+++++
T Consensus 140 ------------------------------------------------------~l~~~~~~~g~~~~A~~~~~~al~-- 163 (388)
T 1w3b_A 140 ------------------------------------------------------DLGNLLKALGRLEEAKACYLKAIE-- 163 (388)
T ss_dssp ------------------------------------------------------HHHHHHHTTSCHHHHHHHHHHHHH--
T ss_pred ------------------------------------------------------HHHHHHHHccCHHHHHHHHHHHHH--
Confidence 112345566778888889999998
Q ss_pred CcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC
Q 001064 343 YFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL 422 (1167)
Q Consensus 343 ~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~ 422 (1167)
++|.....|..++..+...|++++|+..|++++...|.+.++|..++.++...|++++|...|++++.+. |++
T Consensus 164 ------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 164 ------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp ------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred ------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 6778889999999999999999999999999999999999999999999999999999999999999987 889
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
+.+|..++.++...|++++|+..|+++ +++.|++..+|..++.++.+.|++++|+.+|+++++..|. .+.+|.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 309 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRA-IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLN 309 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHHHH
Confidence 999999999999999999999999998 7889999999999999999999999999999999999864 367888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.++.++.. .|++++|..+|+++++..|++...+..++......+. .+.+..+|++++...|+..
T Consensus 310 ~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 310 NLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCH
Confidence 89988766 9999999999999999999999999988888887776 5668999999998776543
No 8
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=99.97 E-value=7.7e-31 Score=257.20 Aligned_cols=123 Identities=38% Similarity=0.671 Sum_probs=106.8
Q ss_pred CcchhHhHHHHHHHHhhhcCcccccccccCCceEEEE----cCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccC
Q 001064 717 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRV----DGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSW 790 (1167)
Q Consensus 717 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~----~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~ 790 (1167)
.|.+||+.||++||++|+++|+.|++||+++|++++. +|+......|.++|+++|++||+++ ++|.++||||++
T Consensus 8 ~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qps~ 87 (140)
T 3q90_A 8 SPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATL 87 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEECG
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEEeC
Confidence 4688999999999999999999999999998777653 4544456678899999999999965 579999999999
Q ss_pred CCceEEEEEEEEEecCccccceeEEEEEEeeeC---CeEEEEcceEEeccCCC
Q 001064 791 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE---KGYFVLNDIFHFLDEEP 840 (1167)
Q Consensus 791 ~~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~---~~y~v~nd~fr~~~~~~ 840 (1167)
++||||+|+|.|+.++. ++++|+|||+|+|++ ++|||+||||||+|+.+
T Consensus 88 ~~gilI~V~G~l~~~~~-~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~~ 139 (140)
T 3q90_A 88 NDGVVVQVMGLLSNNNQ-ALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 139 (140)
T ss_dssp GGCEEEEEEEEEECTTC-CCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC-
T ss_pred CCCEEEEEEEEEecCCC-CccEEEEEEEEeecCCCCCCEEEEEEEeEeehhhc
Confidence 99999999999999885 899999999999996 89999999999999875
No 9
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=99.96 E-value=1.4e-30 Score=248.35 Aligned_cols=116 Identities=35% Similarity=0.612 Sum_probs=104.9
Q ss_pred CcchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccCCCce
Q 001064 717 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGV 794 (1167)
Q Consensus 717 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~~~~i 794 (1167)
.|.+||+.||++||++|+++|+.|++||+++|+++|++|+.+. |.++|+++|++|||++ ++|+++||||++++||
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~~~~~---G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~~gi 78 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESKLVV---GQREIHNRIQQLNFNDCHAKISQVDAQATLGNGV 78 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTCCCEE---SHHHHHHHHHHHCCCSCEEEEEEEEEEEEGGGEE
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEEcCCcEec---CHHHHHHHHHcCCCcceEEEEecccceEcCCCCE
Confidence 5789999999999999999999999999999999998777655 5567899999999885 4799999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeeeC-CeEEEEcceEEec
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFL 836 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nd~fr~~ 836 (1167)
||+|+|.|+.++. +.++|+|||+|+|++ ++|||+||||||+
T Consensus 79 li~V~G~l~~~~~-~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 79 VVQVTGELSNDGQ-PMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEEEESTTC-CCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCC-CCceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 9999999999886 789999999999996 8999999999995
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.6e-28 Score=304.71 Aligned_cols=441 Identities=8% Similarity=-0.003 Sum_probs=358.7
Q ss_pred CcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 001064 68 AAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG 147 (1167)
Q Consensus 68 ~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~ 147 (1167)
.....+.+.+++++++..|++++..+|+ ...|+.++..+... +++++|+.+|++++.. |.+...|..++..+.+.|
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCT--GDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHT--TCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHc--CcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHh
Confidence 3444455559999999999999999995 47889999999874 7999999999998765 778899999999999999
Q ss_pred CHHHHHHHHHHHHhcc----------------CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 001064 148 SMDKVVEVYERAVQGV----------------TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKY 211 (1167)
Q Consensus 148 ~~e~A~~l~eraL~~~----------------P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y 211 (1167)
++++|+++|++..... +.++..|...+..+. ..|++++|+.+|++++...+.+ ...|..+
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l 240 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT-NLSNFDRAKECYKEALMVDAKC---YEAFDQL 240 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC---HHHHHHH
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCchh---hHHHHHH
Confidence 9999999999743322 224899999999998 7899999999999999965543 3444333
Q ss_pred --------------------------------------HHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC
Q 001064 212 --------------------------------------IEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASR 253 (1167)
Q Consensus 212 --------------------------------------~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~ 253 (1167)
+......+++++|+.+|+++++.+ .+...++.....+....
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE-KSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGG-GCHHHHHHHHHHHHHTT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHhc
Confidence 444556789999999999999884 45555555555443332
Q ss_pred CCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 254 PLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKII 333 (1167)
Q Consensus 254 ~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~ 333 (1167)
. .+++......+... .|+... .+......|...+++++++.
T Consensus 320 ~------~~~A~~~~~~~~~~---------------~~~~~~------------------~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 320 R------FIDVLAITTKILEI---------------DPYNLD------------------VYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp C------HHHHHHHHHHHHHH---------------CTTCCT------------------THHHHHHHHHHHTCHHHHHH
T ss_pred C------HHHHHHHHHHHHHc---------------CcccHH------------------HHHHHHHHHHHhCCHHHHHH
Confidence 2 23322211111110 010000 22233456778899999999
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
.|+++++ .++.+...|..++..+.+.|++++|+.+|++++...|.+...|..++..+...|++++|+.+|++
T Consensus 361 ~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 361 ISNDLVD--------RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHH--------HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHh--------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999987 56777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 493 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~ 493 (1167)
++... |++..+|..++.++...|++++|+.+|+++ +++.|++..+|..++.++.+.|++++|+.+|+++++..+....
T Consensus 433 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS-YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 99987 788999999999999999999999999998 7889999999999999999999999999999999998653221
Q ss_pred cCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 494 SQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 494 ~~~-~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.+. ...+|..++..+.. .|++++|+++|+++++..|++...|..++......++ .+.+..+|++++...|++.
T Consensus 511 ~p~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRK-LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI---PGLAITHLHESLAISPNEI 584 (597)
T ss_dssp CSGGGHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred chhhHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCh
Confidence 233 26789999999877 9999999999999999999999999999998888877 6678999999999887764
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=7.2e-27 Score=289.94 Aligned_cols=454 Identities=10% Similarity=-0.005 Sum_probs=369.4
Q ss_pred HhCC-CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHH
Q 001064 91 KANS-SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDI 169 (1167)
Q Consensus 91 ~~nP-~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~l 169 (1167)
...| .+...|..++..+.+ .+++++|+.+|++++...|++ ..|..++..+.+.|++++|+.+|++++.. |.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 152 (597)
T 2xpi_A 77 NTDSLSREDYLRLWRHDALM--QQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSAC 152 (597)
T ss_dssp -----CHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHH
T ss_pred ccchHHHHHHHHHHHHHHHH--ccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhH
Confidence 3344 578899999999887 489999999999999999965 77899999999999999999999999875 788999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHhc-------------CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcch
Q 001064 170 WLHYCIFAINTYGDPETIRRLFERGLAYV-------------GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPI 236 (1167)
Q Consensus 170 w~~ya~~~~~~~~~~~~Ar~~feral~~~-------------g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~ 236 (1167)
|..++..+. ..|++++|+.+|++.+... ........+|...+......|++++|+.+|+++++..+
T Consensus 153 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 153 RYLAAFCLV-KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHH-HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999999999 7899999999999744321 00022468899999999999999999999999999876
Q ss_pred hhHHHHHHHHHH-------------------------------HHh-cCCCcccccHHHHHHHHHHhhhCCCccchhhhc
Q 001064 237 QQLDRYFSSFKE-------------------------------FAA-SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKA 284 (1167)
Q Consensus 237 ~~~~~~~~~~~~-------------------------------~~~-~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~ 284 (1167)
.+...+...... +.. ...+......+++.. ++....+.
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~----~~~~~~~~------ 301 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED----YLSSINGL------ 301 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH----HHHTSTTG------
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH----HHHHhhcC------
Confidence 655443322100 000 111111111222221 12111110
Q ss_pred cccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHH
Q 001064 285 NEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFI 364 (1167)
Q Consensus 285 ~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~ 364 (1167)
..+.. .+..+...|...+++++|+..|+++++ .++.+...|..++..+
T Consensus 302 --------------------~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 302 --------------------EKSSD----LLLCKADTLFVRSRFIDVLAITTKILE--------IDPYNLDVYPLHLASL 349 (597)
T ss_dssp --------------------GGCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCCTTHHHHHHHH
T ss_pred --------------------CchHH----HHHHHHHHHHHhcCHHHHHHHHHHHHH--------cCcccHHHHHHHHHHH
Confidence 01111 223345678899999999999999997 5666778899999999
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
.+.|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++++. |++...|..++.++.+.|++++|+.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999977 7889999999999999999999999
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVD 524 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~k 524 (1167)
+|+++ +++.|++..+|..++.++.+.|++++|+.+|+++++..|. .+.+|..++.++.+ .|++++|.++|++
T Consensus 429 ~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 429 AYTTA-ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFN-KSDMQTAINHFQN 500 (597)
T ss_dssp HHHHH-HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHH-HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 99998 7889999999999999999999999999999999998754 36789999999776 9999999999999
Q ss_pred HHhh------cCCC-HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHH
Q 001064 525 SLDH------VQLS-KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQL 597 (1167)
Q Consensus 525 al~~------~p~~-~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~ 597 (1167)
+++. .|++ ..+|..++......++ .+.+..+|++++...+++. .+|..........|+.+.
T Consensus 501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKM---YDAAIDALNQGLLLSTNDA---------NVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSSCCH---------HHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhccccchhhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHhCCHHH
Confidence 9998 5554 6788888888888776 6778999999998876554 588899999999999999
Q ss_pred HHHHHHHHHhhhCCC
Q 001064 598 IKKAEDRHARLFLPH 612 (1167)
Q Consensus 598 ~~~v~~r~~~~~~~~ 612 (1167)
+.+++++..++.|..
T Consensus 569 A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 569 AITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999998864
No 12
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.96 E-value=6.9e-28 Score=290.70 Aligned_cols=406 Identities=14% Similarity=0.133 Sum_probs=297.4
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHH
Q 001064 78 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-MDKVVEVY 156 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-~e~A~~l~ 156 (1167)
.+..+...|++++...|. +++++++.+|+++|...| +.++|+.|+.++.+.++ .+.++.+|
T Consensus 10 ~i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp --CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHH
T ss_pred chHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 478888888899988887 368899999999999999 88999999999998874 57789999
Q ss_pred HHHHhc---cCCCHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh-----------
Q 001064 157 ERAVQG---VTYSVDIWLHYCIFAIN---TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ----------- 219 (1167)
Q Consensus 157 eraL~~---~P~s~~lw~~ya~~~~~---~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~----------- 219 (1167)
+++|.. ++.+.++|..|++|+.+ ..++.+.+|.+|+|||. +|..- -..+|..|..|+...+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~-~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGS-LSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTT-HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-Chhhh-HHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999985 57899999999999762 23568899999999998 56542 3689999999997643
Q ss_pred --hHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCcccccc
Q 001064 220 --EWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQT 297 (1167)
Q Consensus 220 --~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~ 297 (1167)
.+..|+.+|+.+...-...-..+|..|..++.+++.. +
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~-------------------------------------~--- 189 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK-------------------------------------L--- 189 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC-------------------------------------C---
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc-------------------------------------C---
Confidence 2334455555444321110012344444442221100 0
Q ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHH
Q 001064 298 SKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLY 377 (1167)
Q Consensus 298 ~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~y 377 (1167)
. ...........|+++|. ..|....+|..|+.|+.+.|+.++|+.+|
T Consensus 190 --------~-----------------~~~~~~Rv~~~ye~al~--------~~p~~~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 190 --------G-----------------GRPHESRMHFIHNYILD--------SFYYAEEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp --------C-----------------HHHHHHHHHHHHHHHHH--------HTTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------c-----------------chhhHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 00001223446888887 33455789999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--H------hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 378 ERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT--H------VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 378 eral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~--~------~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
+||+.. |....+|+.|+.+++. +. ....++++.+ . ...+....+|+.++.++.+.++++.||.+|+++
T Consensus 237 erAi~~-P~~~~l~~~y~~~~e~-~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 237 ERGIEM-SDGMFLSLYYGLVMDE-EA--VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHHHH-CCSSHHHHHHHHHTTC-TH--HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHhC-CCcHHHHHHHHhhcch-hH--HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 999999 9999999999886421 11 1112222110 0 011234589999999999999999999999998
Q ss_pred hhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 450 HTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 450 ~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
. ..+....+|+.++.++.+.+ +.++|+.+|+++++..++ .+.+|..|++++.. .|+.++||.+|+++.
T Consensus 313 -~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~------~~~~~~~yid~e~~-~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 313 -G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD------STLLKEEFFLFLLR-IGDEENARALFKRLE-- 381 (493)
T ss_dssp -T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-HTCHHHHHHHHHHSC--
T ss_pred -h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH--
Confidence 3 23346789999999999887 599999999999998753 26789999999876 999999999999983
Q ss_pred cCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcC----CCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001064 529 VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSN----SDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDR 604 (1167)
Q Consensus 529 ~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~----~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r 604 (1167)
.+..+|..|+.||...|+ .+.+|+++++++... .+.+. .+.+.|++||..+|+++++..-+..
T Consensus 382 --k~~~lw~~~~~fE~~~G~---~~~~r~v~~~~~~~~~~~~~~~~~--------~~~~~~~~fe~~~g~l~~~~~~~~~ 448 (493)
T 2uy1_A 382 --KTSRMWDSMIEYEFMVGS---MELFRELVDQKMDAIKADAILPPL--------PPREHNVQMEGILGRYHCFLDSFNF 448 (493)
T ss_dssp --CBHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHTTCCBCCC--------CCC--CCCCCHHHHHHHHHHHHHCB
T ss_pred --HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhcccccCCcc--------cccccHHHHHHHhhhHHHHHHHhhh
Confidence 578999999999999987 556788888886532 23333 3779999999999998888766543
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=4.1e-26 Score=278.92 Aligned_cols=414 Identities=10% Similarity=0.022 Sum_probs=319.3
Q ss_pred cccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 001064 69 AGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 69 ~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~ 148 (1167)
.+..+...|++++|+..|+++++.+|.+..+|+.++..+..+ +++++|+..|+++++.+|++..+|..++.++...|+
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST--GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence 344455558999999999999999999999999999999874 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC----CH-------------------
Q 001064 149 MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL----SF------------------- 205 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~----s~------------------- 205 (1167)
+++|+..|+ ++...|.....|+.. +. ..+....+...|++++...+.... +.
T Consensus 109 ~~~A~~~~~-~~~~~~~~~~~~~~~---~~-~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 109 FTDAMFDLS-VLSLNGDFDGASIEP---ML-ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHHHHHHH-HHC-----------C---HH-HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHHHHHHHH-HHhcCCCCChHHHHH---HH-HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 999999995 888887766665432 11 123346788888888764321110 00
Q ss_pred -----------HHHHHHH--------HHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHH
Q 001064 206 -----------PLWDKYI--------EYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDA 266 (1167)
Q Consensus 206 -----------~lw~~y~--------~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~ 266 (1167)
.++..+. .++...+.+++|..+|+++++..+.+.+.+.....
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~------------------- 244 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL------------------- 244 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH-------------------
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH-------------------
Confidence 1222222 22233356777777777777765554433321111
Q ss_pred HHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 001064 267 AAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHV 346 (1167)
Q Consensus 267 ~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v 346 (1167)
.+..+..++...+++++|+..|+++++
T Consensus 245 -----------------------------------------------~~~~~g~~~~~~~~~~~A~~~~~~~~~------ 271 (537)
T 3fp2_A 245 -----------------------------------------------ALCYTGIFHFLKNNLLDAQVLLQESIN------ 271 (537)
T ss_dssp -----------------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred -----------------------------------------------HHHHHHHHHHhcccHHHHHHHHHHHHh------
Confidence 122234567778899999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHH
Q 001064 347 KPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIH 426 (1167)
Q Consensus 347 ~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~ 426 (1167)
++|. ...|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+..|++++... |++..+|
T Consensus 272 --~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 347 (537)
T 3fp2_A 272 --LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPY 347 (537)
T ss_dssp --HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHH
T ss_pred --cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5666 78899999999999999999999999999999999999999999999999999999999999987 7889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 506 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~ 506 (1167)
..++.++...|++++|+.+|+++ +++.|++..+|..++.++...|++++|+.+|++++...|...........+...+.
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNET-KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 99999999999999999999998 78899999999999999999999999999999999998754332222223455566
Q ss_pred HHHHHh----------CCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 507 FLHLVS----------RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 507 ~~~~~~----------g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
++.. . |++++|+.+|+++++..|++..+|..++.+....++ .+.+..+|++++...++..
T Consensus 427 ~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 427 ILAR-QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK---IDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHH-HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--CH
T ss_pred HHHH-HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCcH
Confidence 6555 6 999999999999999999999999999998888876 6678999999999877654
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=3.6e-25 Score=264.21 Aligned_cols=348 Identities=11% Similarity=0.059 Sum_probs=279.8
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 80 SGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERA 159 (1167)
Q Consensus 80 ~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~era 159 (1167)
......+.+++..+|.+.+.|+.++..+.. .+++++|+.+|++++..+|.+..+|..++..+...|++++|+.+|+++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLA--AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345566778888899999999999988887 478999999999999999999999999999999999999999999999
Q ss_pred HhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhH
Q 001064 160 VQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQL 239 (1167)
Q Consensus 160 L~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~ 239 (1167)
+...|.+...|..++..+. ..|++++|+.+|++++...+.+......|..++.......
T Consensus 87 l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------- 145 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------- 145 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH--------------------
Confidence 9999999999999988888 6788999999999988854432100033333333211100
Q ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHH
Q 001064 240 DRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVRE 319 (1167)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~ 319 (1167)
++ ...
T Consensus 146 --~~-------------------------------------------------------------------------~~a 150 (450)
T 2y4t_A 146 --LR-------------------------------------------------------------------------SQA 150 (450)
T ss_dssp --HH-------------------------------------------------------------------------HHH
T ss_pred --HH-------------------------------------------------------------------------HHH
Confidence 00 012
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCME 399 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~ 399 (1167)
..|...+++++|+..|+++++ ++|.....|..++..+...|++++|+.+|++++..+|.+..+|..++.++.
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILE--------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 234556778888888999987 667778899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhhccChHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhhcCCChH----HHHHH
Q 001064 400 ASGSMDLAHNALARATHVFVKRLPEIHLFA------------ARFKEQNGDIDGARAAYQLVHTETSPGLL----EAIIK 463 (1167)
Q Consensus 400 ~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~------------a~~~e~~g~~~~A~~~~~~a~~~~~P~~~----~~~~~ 463 (1167)
..|++++|+..|++++.+. |+...++..+ +..+...|++++|+.+|+++ +++.|++. .+|..
T Consensus 223 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV-MKTEPSIAEYTVRSKER 300 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCSSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCcchHHHHHHHHH
Confidence 9999999999999999987 7788877766 88899999999999999998 67899874 47888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
++.++.+.|++++|+.+|++++...|+ .+.+|..++.++.. .|++++|+.+|+++++..|++..++..+..+
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQMEPD------NVNALKDRAEAYLI-EEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 899999999999999999999998764 36789999999776 9999999999999999999999888777644
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.2e-26 Score=274.20 Aligned_cols=406 Identities=10% Similarity=0.026 Sum_probs=223.9
Q ss_pred ccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Q 001064 72 ELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDK 151 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~ 151 (1167)
.+...|++++|+..|+++++.+| |..+|+.++..+..+ +++++|+..|+++++.+|++..+|..++.++.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence 34445899999999999999999 799999999998874 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH---HH-------------------------------HHHh
Q 001064 152 VVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF---ER-------------------------------GLAY 197 (1167)
Q Consensus 152 A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~f---er-------------------------------al~~ 197 (1167)
|+..|++++...|.+......++..... ......+...+ ++ .+..
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLN-KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHH-HHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 9999999999887553333332222220 00000000000 00 0000
Q ss_pred cCCC--------CCCHHHHHHHHHHHHH---hhhHHHHHHHHHHHHh-----c--c-------hhhHHHHHHHHHHHHhc
Q 001064 198 VGTD--------YLSFPLWDKYIEYEYM---QQEWSRVAMIYTRILE-----N--P-------IQQLDRYFSSFKEFAAS 252 (1167)
Q Consensus 198 ~g~d--------~~s~~lw~~y~~~e~~---~~~~~~A~~iy~r~l~-----~--p-------~~~~~~~~~~~~~~~~~ 252 (1167)
.... +.....|...+..... .++++.|+.+|+++++ + . +.+...++.....+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 0000 0113444444443333 5566666666666665 3 1 11122222111111110
Q ss_pred CCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 253 RPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKI 332 (1167)
Q Consensus 253 ~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~ 332 (1167)
.. .+++.......... .| . ......+..+|...+++++|+
T Consensus 251 ~~------~~~A~~~~~~~l~~---------------~~--------------~-----~~~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 251 ND------PLGAHEDIKKAIEL---------------FP--------------R-----VNSYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp SC------HHHHHHHHHHHHHH---------------CC--------------C-----HHHHHHHHHHHHTSSCCTTGG
T ss_pred CC------HHHHHHHHHHHHhh---------------Cc--------------c-----HHHHHHHHHHHHHCCCHHHHH
Confidence 00 00000000000000 00 0 001111122334444445555
Q ss_pred HHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001064 333 IGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALA 412 (1167)
Q Consensus 333 ~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~ 412 (1167)
..|+++++ +++.....|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+.+|+
T Consensus 291 ~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 291 NYFDKALK--------LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp GHHHHHHT--------TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HHHHHHhh--------cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555 4444455566666655566666666666666666666666666666665555666666666666
Q ss_pred HHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH------HHHHHHHHHHH---cCCHHHHHHHHHH
Q 001064 413 RATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE------AIIKHANMERR---LGNLEDAFSLYEQ 483 (1167)
Q Consensus 413 rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~------~~~~~a~~e~r---~g~~e~A~~~~~k 483 (1167)
+++... |.++.+|..++.++...|++++|+..|+++ +++.|++.. +|+.++.++.. .|++++|+.+|++
T Consensus 363 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 363 EAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA-IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 666554 455556666666666666666666666665 444554432 55556666655 5666666666666
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHH
Q 001064 484 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEA 538 (1167)
Q Consensus 484 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~ 538 (1167)
++...|. .+.++..++.++.. .|++++|+.+|+++++..|++...+..
T Consensus 441 a~~~~~~------~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~ 488 (514)
T 2gw1_A 441 ASKLDPR------SEQAKIGLAQMKLQ-QEDIDEAITLFEESADLARTMEEKLQA 488 (514)
T ss_dssp HHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHhCcc------cHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhccccHHHHHH
Confidence 6665532 14455555555444 566666666666666666665555543
No 16
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=99.95 E-value=5.4e-28 Score=233.05 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=106.7
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccCCCceE
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVL 795 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~~~~i~ 795 (1167)
+.+||+.||++||++|+++|+.|++||+++| +++|+|+.+. |.++|.++|.+||+++ ++|+++||||+.++||+
T Consensus 7 ~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S-~ls~~g~~~~---G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~~~il 82 (127)
T 1gy6_A 7 WEQIGSSFIQHYYQLFDNDRTQLGAIYIDAS-CLTWEGQQFQ---GKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEE-EEEETTEEEE---SHHHHHHHHHHCSCSCEEEEEEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhhCCCc-EEEECCcccc---CHHHHHHHHHhCCCcceEEEEEEEEEEEeCCCcEE
Confidence 6789999999999999999999999999986 4457887554 5677899999999964 57999999999999999
Q ss_pred EEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEeccCCC
Q 001064 796 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDEEP 840 (1167)
Q Consensus 796 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~~~ 840 (1167)
|+|+|.++.++. ++++|+|||+|+|++++|||+||||||++.++
T Consensus 83 i~V~G~~~~~~~-~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~~~ 126 (127)
T 1gy6_A 83 SMVVGQLKADED-PIMGFHQMFLLKNINDAWVCTNDMFRLALHNF 126 (127)
T ss_dssp EEEEEEEEETTS-CCEEEEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred EEEEEEEEECCC-CcceEeEEEEEEEeCCEEEEEEEEEEEEcccc
Confidence 999999999875 89999999999999999999999999999754
No 17
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=2.2e-26 Score=261.33 Aligned_cols=274 Identities=20% Similarity=0.287 Sum_probs=237.1
Q ss_pred CCChhhHHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------cCCH-------H
Q 001064 348 PLSVTELENWHNYLDFIERD----GDF----NKVVKLYERCLIACANYPEYWIRYVLCMEA-------SGSM-------D 405 (1167)
Q Consensus 348 pld~~~~~~W~~y~~~~e~~----g~~----~~a~~~yeral~~~p~~~~~w~~ya~~l~~-------~g~~-------e 405 (1167)
|.++.+..+|..|++|+++. ++. ++|+.+|++|+..+|.++++|+.|+.++.. .|++ +
T Consensus 2 ~~~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 81 (308)
T 2ond_A 2 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchH
Confidence 35667889999999998765 243 689999999999999999999999998864 4886 8
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE-AIIKHANMERRLGNLEDAFSLYEQA 484 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~-~~~~~a~~e~r~g~~e~A~~~~~kA 484 (1167)
+|+.+|++|+....|++..+|+.++.++...|++++|+.+|+++ +++.|++.. +|+.++.++.+.|++++|+.+|++|
T Consensus 82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL-LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999534899999999999999999999999999998 789999887 9999999999999999999999999
Q ss_pred HHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 485 IAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 485 l~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
++..|.. ..+|..++.+++...|++++|+++|+++++.+|++..+|..++.++...++ .+.++.+|++++.
T Consensus 161 ~~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~ 231 (308)
T 2ond_A 161 REDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLT 231 (308)
T ss_dssp HTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHH
T ss_pred HhcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHh
Confidence 9987642 457888888866557999999999999999999999999999999999887 6779999999998
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCCCCchhhhhcchhhhhcchHHHhhhcCCCCCC
Q 001064 565 SNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPHRSTSELRKRHAEDFLASERAKMAKSYSGAPS 643 (1167)
Q Consensus 565 ~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~~~~~~~~kr~~~~~~~~~~~k~~~~~~~~~~ 643 (1167)
... +++++...+|..|+.|+..+|+.+.+.++++|+.+.+|.... .. ......||++++++.||++.
T Consensus 232 ~~~-----l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~-----~~--~~~~~~~r~~~l~~~P~~~~ 298 (308)
T 2ond_A 232 SGS-----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE-----GK--ETALLVDRYKFMDLYPCSAS 298 (308)
T ss_dssp SSS-----SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS-----SC--HHHHHHTTTCBTTBCSSCHH
T ss_pred ccC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc-----cc--hHHHHHHHHHhcccCCCCHH
Confidence 632 223345689999999999999999999999999999997421 11 22566899999999998763
No 18
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=99.95 E-value=7.1e-28 Score=232.64 Aligned_cols=116 Identities=29% Similarity=0.461 Sum_probs=104.4
Q ss_pred CcchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccCCCce
Q 001064 717 YPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGV 794 (1167)
Q Consensus 717 ~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~~~~i 794 (1167)
.+.+||+.||++||++|+++|+.|++||+++|. +.|+|+.+. |.++|.++|.+||+++ ++|+++||||+.+|||
T Consensus 10 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~-ls~~g~~~~---G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~gi 85 (129)
T 1zo2_A 10 QFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSM-LTWEDTQFQ---GQANIVNKFNSLNFQRVQFEITRVDCQPSPNNGS 85 (129)
T ss_dssp THHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEE-EEETTEEEE---SHHHHHHHHHHHCCSCEEEEEEEEEEEECTBSSE
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcE-EEECCceec---cHHHHHHHHHhCCCcceEEEEEEEEEEEeCCCcE
Confidence 378899999999999999999999999999864 457887554 5677899999999976 6799999999999999
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeeeC-CeEEEEcceEEecc
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQE-KGYFVLNDIFHFLD 837 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~~-~~y~v~nd~fr~~~ 837 (1167)
+|+|+|.++.++. ++++|+|||+|+|++ ++|||+||||||++
T Consensus 86 lI~V~G~~~~~~~-~~~~F~qtF~L~p~~~~~y~I~nD~fR~~~ 128 (129)
T 1zo2_A 86 IVFVTGDVRIDDG-QPLKFSQVFNLMPSGNGGFMIFNDLFRLNL 128 (129)
T ss_dssp EEEEEEEEEETTC-CCEEEEEEEEEEECSSSCEEEEEEEEEEC-
T ss_pred EEEEEEEEEECCC-CcceEEEEEEEEEcCCCcEEEEeEEEEEec
Confidence 9999999999886 899999999999998 89999999999986
No 19
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.95 E-value=7.4e-28 Score=237.54 Aligned_cols=115 Identities=23% Similarity=0.421 Sum_probs=104.9
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccC-------
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW------- 790 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~------- 790 (1167)
+.+||+.||++||++|+++|+.|++||.++|.| .|+|+.+ .|.++|.++|++||+++++|.++|||++.
T Consensus 33 a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~l-s~~g~~~---~G~~~I~~~l~~Lp~~~h~I~s~D~qp~~~~~~~q~ 108 (154)
T 3nv0_B 33 LCNESKKFMDVYYDVMDRKREKIGFLYTQVSNA-VWNGNPI---NGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDM 108 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEE-EETTEEE---ESHHHHHHHHHHSCCEEEEEEEEEEEECCTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEE-EECCeec---ccHHHHHHHHHhCCCeEEEEEEEEEEEcCccccCCC
Confidence 457999999999999999999999999998655 5898765 45667899999999988999999999998
Q ss_pred CCceEEEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEecc
Q 001064 791 NGGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 837 (1167)
Q Consensus 791 ~~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 837 (1167)
++||||+|+|.|+.++. ++++|+|||+|+|++++|||+||||||+|
T Consensus 109 ~~~ilI~V~G~l~~~~~-~~r~F~QtFvL~p~~~~y~V~NDifR~vd 154 (154)
T 3nv0_B 109 SGGMLLNVAGAVTVDGD-SKRAFTQTLLLGVEDGKYKVKSDRFRYVD 154 (154)
T ss_dssp TTCEEEEEEEEEEETTS-CCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred CCeEEEEEEEEEEECCC-CceeEEEEEEEEEeCCEEEEEeeEEEecC
Confidence 67999999999999886 68999999999999999999999999986
No 20
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=99.95 E-value=9.3e-28 Score=230.69 Aligned_cols=117 Identities=26% Similarity=0.445 Sum_probs=104.3
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccC-CCce
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSW-NGGV 794 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~-~~~i 794 (1167)
+.+||+.||++||++|+++|+.|++||+++|.+ +|+|+.+. |.++|.++|.+||+++ ++|+++||||+. +|||
T Consensus 5 ~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~-s~~g~~~~---G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~~gi 80 (125)
T 1gy7_A 5 FNTLAQNFTQFYYNQFDTDRSQLGNLYRNESML-TFETSQLQ---GAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDV 80 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEE-EETTEEEE---SHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTSCE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEE-EECCcEec---CHHHHHHHHHhCCCcceEEEEEEEEEEEecCCCeE
Confidence 678999999999999999999999999997644 57887554 5577899999999876 579999999995 5899
Q ss_pred EEEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEeccC
Q 001064 795 LVMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLDE 838 (1167)
Q Consensus 795 ~v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~ 838 (1167)
+|+|+|.++.++..++++|+|||+|+|++++|||+||||||++.
T Consensus 81 li~V~G~~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 81 LVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124 (125)
T ss_dssp EEEEEEEEEETTCSSCEEEEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEEEEEECCCCCCccEeEEEEEEEeCCEEEEEEEEEEEecC
Confidence 99999999998754799999999999999999999999999973
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-24 Score=263.24 Aligned_cols=431 Identities=12% Similarity=0.011 Sum_probs=321.9
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
..++|+.++..+.+. |++++|+..|++++..+| +..+|..++.++.+.|++++|+.+|++++...|.+...|..++.
T Consensus 5 ~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRN--KKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 467899999999874 899999999999999999 58999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHH---HHHHh-------------------
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIY---TRILE------------------- 233 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy---~r~l~------------------- 233 (1167)
.+. ..|++++|+..|++++...+.+.. ....++...........+...+ +++..
T Consensus 82 ~~~-~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 82 ANE-GLGKFADAMFDLSVLSLNGDFNDA---SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHSSSCCGG---GTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred HHH-HHhhHHHHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 999 789999999999999996654322 2222222222111111111111 00000
Q ss_pred cc-----------------------hhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccC
Q 001064 234 NP-----------------------IQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQ 290 (1167)
Q Consensus 234 ~p-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~ 290 (1167)
.| +.+...++.....+..... ....+++............+.. ...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~~~~~--------~~~ 226 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS---PESYDKADESFTKAARLFEEQL--------DKN 226 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC---TTHHHHHHHHHHHHHHHHHHHT--------TTS
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHhhhhh--------ccC
Confidence 00 1123333333332221000 1111222211111111000000 000
Q ss_pred CccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCCh
Q 001064 291 PDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF 370 (1167)
Q Consensus 291 p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~ 370 (1167)
|+.. .........+..+..+|...+++++|+..|+++++ .++. ...|..++..+...|++
T Consensus 227 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------~~~~-~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 227 NEDE-----------KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE--------LFPR-VNSYIYMALIMADRNDS 286 (514)
T ss_dssp TTCH-----------HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH--------HCCC-HHHHHHHHHHHHTSSCC
T ss_pred cccc-----------ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------hCcc-HHHHHHHHHHHHHCCCH
Confidence 0000 00011122334456678889999999999999998 5566 88899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001064 371 NKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 371 ~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
++|+..|++++..+|.+..+|..++.++...|++++|+..|++++.+. |.+..+|..++.++...|++++|+.+|+++
T Consensus 287 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 364 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEA- 364 (514)
T ss_dssp TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999987 788999999999999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHh
Q 001064 451 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLD 527 (1167)
Q Consensus 451 ~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~~~Ar~i~~kal~ 527 (1167)
++..|++..+|..++.++.+.|++++|+.+|++++...+..........+|..++.++. . .|++++|+.+|+++++
T Consensus 365 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT-RNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH-TSCCTTHHHHHHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999998754221111336777887754 5 7999999999999999
Q ss_pred hcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 528 HVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 528 ~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
..|++...|..++.+....++ .+.+..+|++++...++++
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQED---IDEAITLFEESADLARTME 483 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSSHH
T ss_pred hCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhccccH
Confidence 999999999988888888876 6678999999999877554
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=4.3e-25 Score=269.81 Aligned_cols=444 Identities=10% Similarity=0.011 Sum_probs=330.2
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
..++|+.++..+.. .+++++|+..|++++..+|++..+|..++.++.+.|++++|++.|++++...|.+...|+.++.
T Consensus 24 ~a~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFT--AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHH--TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 57889999999987 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHH---HHHHHHHhc
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYF---SSFKEFAAS 252 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~---~~~~~~~~~ 252 (1167)
.+. ..|++++|+..|+ ++...+.. ...++......+....+..+|++++...+....... .....+...
T Consensus 102 ~~~-~~g~~~~A~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 102 ANE-SLGNFTDAMFDLS-VLSLNGDF------DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHH-HHTCHHHHHHHHH-HHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred HHH-HcCCHHHHHHHHH-HHhcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence 998 7899999999996 77644432 122233334455667889999999876332110000 000000000
Q ss_pred CCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHH-----HHHHHHHHHH
Q 001064 253 RPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAV-----REEMYKKAKE 327 (1167)
Q Consensus 253 ~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~-----~~~~y~~~~~ 327 (1167)
. ..+... ..+....+. . .....+...+.. ........++
T Consensus 174 ~------~~~~~~----~~~~~~~~~-------------------------~-~~~~~~~~~l~~~~~~~~~~~~~a~~~ 217 (537)
T 3fp2_A 174 F------DSHLEV----SSVNTSSNY-------------------------D-TAYALLSDALQRLYSATDEGYLVANDL 217 (537)
T ss_dssp S------CHHHHH----HTSCCCCSS-------------------------C-SSHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred c------ChHHHH----HHHhhcccc-------------------------c-cHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 0 000000 000000000 0 000111111111 1233444578
Q ss_pred HHHHHHHHHhhhcCCCcccCCCChhhHH-------HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001064 328 FDSKIIGFETAIRRPYFHVKPLSVTELE-------NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 400 (1167)
Q Consensus 328 ~~~a~~~~e~al~r~~~~v~pld~~~~~-------~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~ 400 (1167)
+.+|+..|+++++ .+|.+.. .|..++.++...|++++|+..|++++..+|. ..+|+.++.++..
T Consensus 218 ~~~A~~~~~~~l~--------~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 218 LTKSTDMYHSLLS--------ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHH--------HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHH
Confidence 9999999999998 5555544 4555566777889999999999999999999 9999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001064 401 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL 480 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~ 480 (1167)
.|++++|..+|++++... |+++.+|..++.++...|++++|+..|+++ ++++|++..+|..++.++...|++++|+.+
T Consensus 289 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA-QSLNPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp SSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999988 889999999999999999999999999998 788999999999999999999999999999
Q ss_pred HHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHH------HHHHhHhhC-------C
Q 001064 481 YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE------ALIHFESIQ-------S 547 (1167)
Q Consensus 481 ~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~------~~~~~e~~~-------~ 547 (1167)
|++++...|.. +.++..++.++.. .|++++|+.+|+++++..|++...+. ..+.+.... -
T Consensus 367 ~~~~~~~~~~~------~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 439 (537)
T 3fp2_A 367 FNETKLKFPTL------PEVPTFFAEILTD-RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439 (537)
T ss_dssp HHHHHHHCTTC------THHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----C
T ss_pred HHHHHHhCCCC------hHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhh
Confidence 99999998643 5688888988776 99999999999999998876553322 222222222 0
Q ss_pred ChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 548 SPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 548 ~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
..++.+.+..+|++++...+++. .++..........|+.+.+.+.+++..++.+..
T Consensus 440 ~~~~~~~A~~~~~~a~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 440 DEEKFNAAIKLLTKACELDPRSE---------QAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred hHhHHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 11447789999999999877654 578888888999999999999999999998864
No 23
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=99.94 E-value=8.7e-27 Score=232.86 Aligned_cols=124 Identities=19% Similarity=0.320 Sum_probs=105.5
Q ss_pred CCcchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCC----------c--ccchhchHHHHHHHhcC--CCcc--e
Q 001064 716 AYPAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGD----------S--TESASSMLDIHSLVISL--NFTA--I 779 (1167)
Q Consensus 716 ~~~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~----------~--~~~~~~~~~i~~~~~~l--~~~~--~ 779 (1167)
..+.+||+.||++||++|+++|+.|++||+++|.|+ |+.. . ...+.|.++|.++|.+| ||++ +
T Consensus 9 p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s-~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h 87 (154)
T 2qiy_A 9 VTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELT-HTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKL 87 (154)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-EECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEE-EccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEE
Confidence 347889999999999999999999999999987666 4521 0 23456788999999999 9765 5
Q ss_pred eEeeeeccccCC--CceEEEEEEEEEecCccccceeEEEEEEeeeC--CeEEEEcceEEeccCCCc
Q 001064 780 EIKTINSLGSWN--GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE--KGYFVLNDIFHFLDEEPV 841 (1167)
Q Consensus 780 ~i~~~d~q~~~~--~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~--~~y~v~nd~fr~~~~~~~ 841 (1167)
+|.++|||++.+ +||+|+|+|.++.++. ++|+|+|||+|+|++ ++|||+||||||+++++.
T Consensus 88 ~I~s~D~q~~~~~~~~ilI~V~G~~~~~~~-~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~~ 152 (154)
T 2qiy_A 88 KLDTIDFQYTGHLHKSILIMATGEMFWTGT-PVYKFCQTFILLPSSNGSTFDITNDIIRFISNSFK 152 (154)
T ss_dssp EEEEEEEEEESGGGCEEEEEEEEEEEETTC-CCEEEEEEEEEEECC---CEEEEEEEEEEECC---
T ss_pred EEEEEEEEEccCCCCEEEEEEEEEEEECCC-CCceEEEEEEEEEeCCCCcEEEEEEEEEEEcceec
Confidence 799999999987 9999999999999875 899999999999997 589999999999998653
No 24
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=3.8e-23 Score=237.43 Aligned_cols=334 Identities=11% Similarity=0.063 Sum_probs=271.5
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
|.+.|+.++..+.. .|++++|...|++++..+|.+..+|..++.++...|++++|+..|++++...|.+...|..++.
T Consensus 2 ~~~~~~~~~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLA--AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 56788888888876 4788899999999999999988899999999988899999999999999888888888888888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCC
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPL 255 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~ 255 (1167)
++. ..|++++|+..|++++...+........|..+..+.... .+
T Consensus 80 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------~~------------- 123 (359)
T 3ieg_A 80 LLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ----------------------RL------------- 123 (359)
T ss_dssp HHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH----------------------HH-------------
T ss_pred HHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHH----------------------HH-------------
Confidence 888 678888888888888874431001223333222211100 00
Q ss_pred cccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 256 SELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 335 (1167)
Q Consensus 256 ~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~ 335 (1167)
.....++...+++++|+..|
T Consensus 124 ------------------------------------------------------------~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 124 ------------------------------------------------------------RSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp ------------------------------------------------------------HHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHccCHHHHHHHH
Confidence 01123456677788888889
Q ss_pred HhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 336 ETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARAT 415 (1167)
Q Consensus 336 e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~ 415 (1167)
+++++ .+|.+...|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|...|++++
T Consensus 144 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 144 DKILE--------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHH--------hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99887 6677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccChHHHHHH------------HHHHHHcCCHHHHHHHHHHHhhhcCCChHHH----HHHHHHHHHHcCCHHHHHH
Q 001064 416 HVFVKRLPEIHLFA------------ARFKEQNGDIDGARAAYQLVHTETSPGLLEA----IIKHANMERRLGNLEDAFS 479 (1167)
Q Consensus 416 ~~~~p~~~~l~~~~------------a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~----~~~~a~~e~r~g~~e~A~~ 479 (1167)
+.. |+....|..+ +.++...|++++|...|+++ ++..|++... |..++.++...|++++|+.
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV-MKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 987 7777766544 77788999999999999998 6788987744 6678889999999999999
Q ss_pred HHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 480 LYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 480 ~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
+|++++...|. .+.+|..++.++.. .|++++|...|+++++.+|++..++..+.....
T Consensus 294 ~~~~~~~~~~~------~~~~~~~~~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 294 ICSEVLQMEPD------NVNALKDRAEAYLI-EEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc------cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99999998753 36789999999776 999999999999999999999988876665543
No 25
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=99.93 E-value=2.6e-26 Score=225.52 Aligned_cols=116 Identities=22% Similarity=0.409 Sum_probs=104.5
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccC------C
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW------N 791 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~------~ 791 (1167)
+.+||+.||++||++|+++|+.|++||+++|. ++|+|+.+. |.++|.++|.+||+++++|.++|||++. +
T Consensus 13 a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~-ls~~g~~~~---G~~~I~~~l~~Lp~~~h~i~s~d~q~~~~~~~~~~ 88 (140)
T 1jkg_A 13 ACRAAEEFVNVYYTTMDKRRRLLSRLYMGTAT-LVWNGNAVS---GQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQ 88 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEE-EEETTEEEE---SHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcE-EEECCeeec---CHHHHHHHHHhCCCceeEEEEEEEEEcCCcccCCC
Confidence 46799999999999999999999999999864 458987554 5567899999999999999999999996 5
Q ss_pred CceEEEEEEEEEecCccccceeEEEEEEeeeC----CeEEEEcceEEeccC
Q 001064 792 GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQE----KGYFVLNDIFHFLDE 838 (1167)
Q Consensus 792 ~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~~----~~y~v~nd~fr~~~~ 838 (1167)
+||+|+|+|.++.++. ++++|+|||+|+|++ ++|||+||||||++.
T Consensus 89 ~~ilI~V~G~~~~~~~-~~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 89 TTVLVVICGSVKFEGN-KQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp CEEEEEEEEEEEETTS-CCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred CeEEEEEEEEEEECCC-CceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 8999999999999876 799999999999974 799999999999985
No 26
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.8e-24 Score=255.32 Aligned_cols=358 Identities=10% Similarity=0.054 Sum_probs=294.0
Q ss_pred ccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 001064 45 VVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDA 124 (1167)
Q Consensus 45 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~ 124 (1167)
...+...+..+...+|.........+..+...|++++++..|+++++.+|.+..+|+.++..+..+ +++++|+..|++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM--GKSKAALPDLTK 85 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 344455566777777777766666777777779999999999999999999999999999999875 799999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH---HHHHHHHHH------------HHhhcCCHHHHHH
Q 001064 125 FLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV---DIWLHYCIF------------AINTYGDPETIRR 189 (1167)
Q Consensus 125 ~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~---~lw~~ya~~------------~~~~~~~~~~Ar~ 189 (1167)
+++.+|++..+|..++.++.+.|++++|+.+|++++...|.+. ..|..++.. +. ..|++++|+.
T Consensus 86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~ 164 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF-GSGDYTAAIA 164 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 9999999999999999999999999999999999999999998 888777443 55 5799999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
+|++++...+. ...+|..++......|+++.|..+|+++++..+.+...++.
T Consensus 165 ~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------------------- 216 (450)
T 2y4t_A 165 FLDKILEVCVW---DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK------------------------- 216 (450)
T ss_dssp HHHHHHHHCTT---CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHH-------------------------
T ss_pred HHHHHHHhCCC---ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-------------------------
Confidence 99999996554 57889999999999999999999999998875554433331
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
+..+|...+++++|+..|++++. +
T Consensus 217 ------------------------------------------------l~~~~~~~g~~~~A~~~~~~~~~--------~ 240 (450)
T 2y4t_A 217 ------------------------------------------------ISTLYYQLGDHELSLSEVRECLK--------L 240 (450)
T ss_dssp ------------------------------------------------HHHHHHHTTCHHHHHHHHHHHHH--------H
T ss_pred ------------------------------------------------HHHHHHHcCCHHHHHHHHHHHHH--------h
Confidence 12345566778888888888887 5
Q ss_pred ChhhHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 350 SVTELENWHNY------------LDFIERDGDFNKVVKLYERCLIACANYPE----YWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 350 d~~~~~~W~~y------------~~~~e~~g~~~~a~~~yeral~~~p~~~~----~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
+|.....|..+ +..+...|++++|+.+|++++...|.++. +|..++.++...|++++|...|++
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666665 77788899999999999999999999854 788889999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH------------HHHcC-----CHHH
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM------------ERRLG-----NLED 476 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~------------e~r~g-----~~e~ 476 (1167)
++.+. |+++.+|+.++.++...|++++|+..|+++ ++++|++..+|..++.+ +..+| +.++
T Consensus 321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETA-QEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 99987 889999999999999999999999999998 78999999998888844 33344 5678
Q ss_pred HHHHHHH-HHHhhhCC
Q 001064 477 AFSLYEQ-AIAIEKGK 491 (1167)
Q Consensus 477 A~~~~~k-Al~~~~~~ 491 (1167)
++..|++ ++...|++
T Consensus 399 ~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 399 IIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHhCCCC
Confidence 8999987 78777754
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=6e-22 Score=227.42 Aligned_cols=312 Identities=10% Similarity=0.063 Sum_probs=253.9
Q ss_pred ccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q 001064 70 GQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM 149 (1167)
Q Consensus 70 ~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~ 149 (1167)
+..+...|++++++..|+++++.+|.+.++|+.++..+..+ +++++|...|++++..+|++..+|..++.++...|++
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM--GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCCh
Confidence 34445558999999999999999999999999999999885 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC---CCHHHHHHH------------HHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001064 150 DKVVEVYERAVQGVT---YSVDIWLHY------------CIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEY 214 (1167)
Q Consensus 150 e~A~~l~eraL~~~P---~s~~lw~~y------------a~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~ 214 (1167)
++|+.+|++++...| .+.+.|..+ +..+. ..|++++|..+|++++...+. ...+|...+..
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~ 163 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF-DGADYTAAITFLDKILEVCVW---DAELRELRAEC 163 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC---chHHHHHHHHH
Confidence 999999999999999 899999887 45666 679999999999999996655 47899999999
Q ss_pred HHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccc
Q 001064 215 EYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDAT 294 (1167)
Q Consensus 215 e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~ 294 (1167)
....++++.|...|+++++..+.+...++..
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------------------------------------------- 194 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKI------------------------------------------------- 194 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSCCHHHHHHH-------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------------------------------
Confidence 9999999999999999998866654433311
Q ss_pred cccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHH------------HH
Q 001064 295 EQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY------------LD 362 (1167)
Q Consensus 295 e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y------------~~ 362 (1167)
..+|...+++++|+..|+++++ ++|.....|..+ +.
T Consensus 195 ------------------------a~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 195 ------------------------STLYYQLGDHELSLSEVRECLK--------LDQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp ------------------------HHHHHHHTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHcCCHHHHHHHHHHHHh--------hCccchHHHHHHHHHHHHHHHHHHHH
Confidence 2345566778888888988887 555555555544 44
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC
Q 001064 363 FIERDGDFNKVVKLYERCLIACANYPEY----WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD 438 (1167)
Q Consensus 363 ~~e~~g~~~~a~~~yeral~~~p~~~~~----w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~ 438 (1167)
.+...|++++|+..|++++...|.+..+ |..++.++...|++++|..+|+++++.. |+++.+|+.++.++...|+
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC
Confidence 5667788888888888888887777643 4456777777788888888888888776 6777788888888888888
Q ss_pred HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 439 IDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 439 ~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
+++|...|+++ ++++|++..++..+..+...
T Consensus 322 ~~~A~~~~~~a-~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 322 YDEAIQDYEAA-QEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhcCCCChHHHHHHHHHHHH
Confidence 88888888887 67788877777666655443
No 28
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=6.4e-21 Score=216.43 Aligned_cols=301 Identities=10% Similarity=0.030 Sum_probs=248.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC
Q 001064 86 LWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY 165 (1167)
Q Consensus 86 l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~ 165 (1167)
+...+...+.+.+.+..++..+.. .+++++|+++|++++..+|.+...|..++..+...|++++|+.+|++++...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYY--NCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp ---------CCCTTHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHhhchhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC
Confidence 446667778888888999988887 489999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHH
Q 001064 166 SVDIWLHYCIFAINTYG-DPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFS 244 (1167)
Q Consensus 166 s~~lw~~ya~~~~~~~~-~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~ 244 (1167)
+..+|...+..+. ..| ++++|+..|++++...+. ....|..++......++++.|...|+++++..+.+...++.
T Consensus 89 ~~~~~~~l~~~~~-~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 164 (330)
T 3hym_B 89 NPVSWFAVGCYYL-MVGHKNEHARRYLSKATTLEKT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164 (330)
T ss_dssp STHHHHHHHHHHH-HSCSCHHHHHHHHHHHHTTCTT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred CHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence 9999999999888 567 899999999999985443 56789999999999999999999999988765543222221
Q ss_pred HHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH
Q 001064 245 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 324 (1167)
Q Consensus 245 ~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~ 324 (1167)
+..+|..
T Consensus 165 -------------------------------------------------------------------------l~~~~~~ 171 (330)
T 3hym_B 165 -------------------------------------------------------------------------IGLEYGL 171 (330)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1234566
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---------CCCHHHHHHHH
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC---------ANYPEYWIRYV 395 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~---------p~~~~~w~~ya 395 (1167)
.+++++|+..|+++++ ++|.+...|..++..+...|++++|+..|++++... +....+|..++
T Consensus 172 ~~~~~~A~~~~~~al~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 172 TNNSKLAERFFSQALS--------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp TTCHHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 7778888888999887 677778889999999999999999999999999886 66678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH-HHcCCH
Q 001064 396 LCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME-RRLGNL 474 (1167)
Q Consensus 396 ~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e-~r~g~~ 474 (1167)
.++...|++++|+..|++++++. |++..+|..++.++...|++++|...|+++ ++++|++..+|..++..+ ...|+.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA-LGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT-TTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH-HccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999999999999999887 788899999999999999999999999998 788999999988888765 455654
Q ss_pred H
Q 001064 475 E 475 (1167)
Q Consensus 475 e 475 (1167)
+
T Consensus 322 ~ 322 (330)
T 3hym_B 322 E 322 (330)
T ss_dssp -
T ss_pred h
Confidence 3
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1e-20 Score=214.69 Aligned_cols=304 Identities=8% Similarity=-0.013 Sum_probs=258.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001064 121 VYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 200 (1167)
Q Consensus 121 ~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~ 200 (1167)
.....+...|.+...++..+..+...|++++|+++|++++...|.+...|..++..+. ..|++++|..+|++++...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 10 VIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLV-ELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp ----------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcC
Confidence 3456677788999999999999999999999999999999999999999999998888 679999999999999996554
Q ss_pred CCCCHHHHHHHHHHHHHhh-hHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccc
Q 001064 201 DYLSFPLWDKYIEYEYMQQ-EWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETG 279 (1167)
Q Consensus 201 d~~s~~lw~~y~~~e~~~~-~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~ 279 (1167)
+..+|...+......+ +++.|...|++++...+.+...++
T Consensus 89 ---~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------------------------------ 129 (330)
T 3hym_B 89 ---NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWI------------------------------------ 129 (330)
T ss_dssp ---STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHH------------------------------------
T ss_pred ---CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHH------------------------------------
Confidence 4788999999999999 999999999999987665443332
Q ss_pred hhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHH
Q 001064 280 AEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN 359 (1167)
Q Consensus 280 ~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~ 359 (1167)
.+..+|...+++++|+..|+++++ +++.....|..
T Consensus 130 -------------------------------------~l~~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~ 164 (330)
T 3hym_B 130 -------------------------------------AYGHSFAVESEHDQAMAAYFTAAQ--------LMKGCHLPMLY 164 (330)
T ss_dssp -------------------------------------HHHHHHHHHTCHHHHHHHHHHHHH--------HTTTCSHHHHH
T ss_pred -------------------------------------HHHHHHHHccCHHHHHHHHHHHHH--------hccccHHHHHH
Confidence 112345667888899999999998 56666778999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--------ccChHHHHHHHH
Q 001064 360 YLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV--------KRLPEIHLFAAR 431 (1167)
Q Consensus 360 y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--------p~~~~l~~~~a~ 431 (1167)
++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|...|++++.+.+ +....+|..++.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999763 456789999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
++...|++++|+..|+++ +++.|++..+|..++.++.++|++++|+.+|+++++..|+ .+.++..++..+...
T Consensus 245 ~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~ 317 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQA-LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD------DTFSVTMLGHCIEMY 317 (330)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC------CHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHH-HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC------chHHHHHHHHHHHHH
Confidence 999999999999999998 7889999999999999999999999999999999999864 366788888876554
Q ss_pred hCCHH
Q 001064 512 SRNAE 516 (1167)
Q Consensus 512 ~g~~~ 516 (1167)
.|+.+
T Consensus 318 ~g~~~ 322 (330)
T 3hym_B 318 IGDSE 322 (330)
T ss_dssp TTC--
T ss_pred hCchh
Confidence 66544
No 30
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=6.8e-21 Score=216.03 Aligned_cols=243 Identities=17% Similarity=0.268 Sum_probs=154.7
Q ss_pred CCHHHHHHHHHHHHHh----CCH----HHHHHHHHHHHhccCCCHHHHHHHHHHHHh------hcCCH-------HHHHH
Q 001064 131 LCYGYWKKYADHEARV----GSM----DKVVEVYERAVQGVTYSVDIWLHYCIFAIN------TYGDP-------ETIRR 189 (1167)
Q Consensus 131 ~~~~~W~~~a~~e~~~----~~~----e~A~~l~eraL~~~P~s~~lw~~ya~~~~~------~~~~~-------~~Ar~ 189 (1167)
....+|++|+++|.+. ++. ++|+.+|+++|..+|.++++|+.|+.++.. ..|++ ++|+.
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 3456777777777664 232 567777777777777777777777777652 13554 67777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
+|++|+..+ ++.+..+|..|+.++...|++++|+.+|+++|++++.+..
T Consensus 86 ~~~rAl~~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----------------------------- 134 (308)
T 2ond_A 86 IYERAISTL--LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT----------------------------- 134 (308)
T ss_dssp HHHHHHTTT--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH-----------------------------
T ss_pred HHHHHHHHh--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc-----------------------------
Confidence 777777631 2234667777777777777777777777666554432111
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
T Consensus 135 -------------------------------------------------------------------------------- 134 (308)
T 2ond_A 135 -------------------------------------------------------------------------------- 134 (308)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~-~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
.+|..|+.++.+.|++++|+.+|++++..+|....+|+.++.+... .|+.++|+.+|+++++.+ |+++.+|+.
T Consensus 135 -----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (308)
T 2ond_A 135 -----LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLA 208 (308)
T ss_dssp -----HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 0355555555555666666666666666666666666665554332 466666666666666665 566666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhh--cCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTE--TSPG-LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~--~~P~-~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
++.++.+.|++++|+.+|++++.. +.|+ ...+|..++.++.+.|++++|+.+++++++..|.
T Consensus 209 ~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 209 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 666666666777777777766321 2443 5667777777777777777777777777777664
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.8e-20 Score=223.46 Aligned_cols=385 Identities=12% Similarity=0.048 Sum_probs=271.1
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHH
Q 001064 82 EEDRLWNIVKANSSD--FSAWTALLEETEKLAQDNIVKIRRVYDAFLAE---------FPLCYGYWKKYADHEARVGSMD 150 (1167)
Q Consensus 82 a~~~l~~~l~~nP~d--~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~---------~P~~~~~W~~~a~~e~~~~~~e 150 (1167)
.++++...++..+.. ...+..|+.++.. .|++++|++.|++++++ +|.....|..++.++..+|+++
T Consensus 34 ~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~--~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~ 111 (472)
T 4g1t_A 34 FEDKVFYRTEFQNREFKATMCNLLAYLKHL--KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLS 111 (472)
T ss_dssp HHHHHHHHTTSCC---CCHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChH
Confidence 334444444443333 4455678888776 48999999999999987 6777888999999999999999
Q ss_pred HHHHHHHHHHhcc--------CCCHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---h
Q 001064 151 KVVEVYERAVQGV--------TYSVDIWLHYCIFAIN-TYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM---Q 218 (1167)
Q Consensus 151 ~A~~l~eraL~~~--------P~s~~lw~~ya~~~~~-~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~---~ 218 (1167)
+|+..|++++.+. +....++...+..+.. ..+++++|+..|++++...|. ...+|..++..... .
T Consensus 112 ~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~---~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCc
Confidence 9999999999864 2345555554433331 235789999999999996655 46677777665443 3
Q ss_pred hhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccC
Q 001064 219 QEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTS 298 (1167)
Q Consensus 219 ~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~ 298 (1167)
++.+.|...|++++++.+.+...+......+
T Consensus 189 ~~~~~al~~~~~al~l~p~~~~~~~~l~~~~------------------------------------------------- 219 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKL------------------------------------------------- 219 (472)
T ss_dssp CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH-------------------------------------------------
T ss_pred hHHHHHHHHHHHHhhcCCcchHHHHHHHHHH-------------------------------------------------
Confidence 4557788899999988776555443222111
Q ss_pred CccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHH
Q 001064 299 KPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYE 378 (1167)
Q Consensus 299 ~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~ye 378 (1167)
..++...+++++++..|++++. ++|.....|..++.++...|++++|+..|+
T Consensus 220 --------------------~~~~~~~~~~~~a~~~~~~al~--------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 220 --------------------HKMREEGEEEGEGEKLVEEALE--------KAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp --------------------HHCC------CHHHHHHHHHHH--------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------HHHHhhhhHHHHHHHHHHHHHH--------hCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 1122334556677777888887 677888999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCH
Q 001064 379 RCLIACANYPEYWIRYVLCMEAS-------------------GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDI 439 (1167)
Q Consensus 379 ral~~~p~~~~~w~~ya~~l~~~-------------------g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~ 439 (1167)
+++...|.+..+|..++.++... +..+.|...|++++++. |....++..++.++...|++
T Consensus 272 ~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 99999999999999998766432 23567888999999887 78888999999999999999
Q ss_pred HHHHHHHHHHhhhcCCChHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001064 440 DGARAAYQLVHTETSPGLLE---AIIKHANME-RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 515 (1167)
Q Consensus 440 ~~A~~~~~~a~~~~~P~~~~---~~~~~a~~e-~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 515 (1167)
++|+..|+++ +++.|++.. +++.++.+. ...|++++|+..|++++.+.+.. .. ..+..
T Consensus 351 ~~A~~~~~ka-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~------~~-----------~~~~~ 412 (472)
T 4g1t_A 351 EEAEYYFQKE-FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS------RE-----------KEKMK 412 (472)
T ss_dssp HHHHHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC------HH-----------HHHHH
T ss_pred HHHHHHHHHH-HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc------HH-----------HHHHH
Confidence 9999999998 677777654 356666553 46799999999999999998642 10 12235
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 516 EKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 516 ~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
..+.++++++++.+|++...|..++.+....|+ .+.+..+|+++|...+.++
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~---~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEK---MQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH---CC-----------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCC
Confidence 667788999999999999888877776665543 4568899999998877665
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.5e-19 Score=217.17 Aligned_cols=372 Identities=14% Similarity=0.025 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC---
Q 001064 133 YGYWKKYADHEARVGSMDKVVEVYERAVQG---------VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT--- 200 (1167)
Q Consensus 133 ~~~W~~~a~~e~~~~~~e~A~~l~eraL~~---------~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~--- 200 (1167)
..++..++.++..+|++++|++.|++++.+ +|.....|..++..+. ..|++++|...|++++...+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhccc
Confidence 467778999999999999999999999986 4667778888888888 789999999999999976431
Q ss_pred --CCCCHHHHHHHHHHH--HHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCC
Q 001064 201 --DYLSFPLWDKYIEYE--YMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPS 276 (1167)
Q Consensus 201 --d~~s~~lw~~y~~~e--~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~ 276 (1167)
+.....++...+..+ ...+++++|+..|++++++.|.+.+.++.....+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~-------------------------- 183 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY-------------------------- 183 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------
Confidence 222344444433322 33467999999999999998887765543221110
Q ss_pred ccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHH
Q 001064 277 ETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELEN 356 (1167)
Q Consensus 277 e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~ 356 (1167)
.+...++.++++..|+++|+ ++|.....
T Consensus 184 --------------------------------------------~l~~~~~~~~al~~~~~al~--------l~p~~~~~ 211 (472)
T 4g1t_A 184 --------------------------------------------RLDNWPPSQNAIDPLRQAIR--------LNPDNQYL 211 (472)
T ss_dssp --------------------------------------------HHHHSCCCCCTHHHHHHHHH--------HCSSCHHH
T ss_pred --------------------------------------------HhcCchHHHHHHHHHHHHhh--------cCCcchHH
Confidence 01112233445666778887 67776777
Q ss_pred HHHHHHHH----HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 357 WHNYLDFI----ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 357 W~~y~~~~----e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
|..++..+ ...+++++|+.+|++++...|.+..+|..++.++...|++++|...|++++++. |++..+|..++.+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHH
Confidence 76665433 345788999999999999999999999999999999999999999999999988 8889998888776
Q ss_pred HHH-------------------cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCc
Q 001064 433 KEQ-------------------NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEH 493 (1167)
Q Consensus 433 ~e~-------------------~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~ 493 (1167)
+.. .+.++.|...|+++ .+++|.+..+|..++.++...|++++|+.+|+++|...++.
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~-- 367 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA-DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP-- 367 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH-HHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH--
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH-hhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC--
Confidence 533 23467788899998 78899999999999999999999999999999999987532
Q ss_pred cCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCC
Q 001064 494 SQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTA 573 (1167)
Q Consensus 494 ~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l 573 (1167)
.....++..++.+.....|++++|...|+++|++.|++..... ..+.+.+++++++..+|.+..
T Consensus 368 -~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-------------~~~~l~~~~~~~l~~~p~~~~-- 431 (472)
T 4g1t_A 368 -VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-------------MKDKLQKIAKMRLSKNGADSE-- 431 (472)
T ss_dssp -HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-------------HHHHHHHHHHHHHHHCC-CTT--
T ss_pred -hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-------------HHHHHHHHHHHHHHhCCCCHH--
Confidence 1123456778877665689999999999999999999864321 134567788899998887763
Q ss_pred CHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhC
Q 001064 574 NAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFL 610 (1167)
Q Consensus 574 ~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~ 610 (1167)
+|..........|+.+.+.+.++|..++-+
T Consensus 432 -------~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 432 -------ALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp -------HHHHHHHHHHHHHHCC--------------
T ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 677777777778888888888888877643
No 33
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=1e-20 Score=218.89 Aligned_cols=305 Identities=11% Similarity=-0.032 Sum_probs=242.9
Q ss_pred hhHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHH
Q 001064 113 DNIVKIRR-VYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETI 187 (1167)
Q Consensus 113 ~~~~~ar~-~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~A 187 (1167)
+++++|.. .|++++...|.++ ..|+.++..+.+.|++++|+.+|++++...|.+..+|..++..+. ..|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHH
Confidence 46777777 8888888887763 568888888888889999999999998888888888888888887 67888888
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Q 001064 188 RRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAA 267 (1167)
Q Consensus 188 r~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~ 267 (1167)
+..|++++...+. ...+|..++......|+++.|...|++++...+.+...+..... ...
T Consensus 118 ~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------- 177 (368)
T 1fch_A 118 ISALRRCLELKPD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE-GAG---------------- 177 (368)
T ss_dssp HHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------------------
T ss_pred HHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH-Hhh----------------
Confidence 8889988886544 46788888888888888888888888888875543221110000 000
Q ss_pred HHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccC
Q 001064 268 AVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVK 347 (1167)
Q Consensus 268 ~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~ 347 (1167)
... ... .......++ ..+++++|+..|+++++
T Consensus 178 ----------~~~---------------------------~~~---~~~~~~~~~-~~~~~~~A~~~~~~a~~------- 209 (368)
T 1fch_A 178 ----------GAG---------------------------LGP---SKRILGSLL-SDSLFLEVKELFLAAVR------- 209 (368)
T ss_dssp ------------------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHH-------
T ss_pred ----------hhc---------------------------ccH---HHHHHHHHh-hcccHHHHHHHHHHHHH-------
Confidence 000 000 000112234 67889999999999998
Q ss_pred CCChh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHH
Q 001064 348 PLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 425 (1167)
Q Consensus 348 pld~~--~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l 425 (1167)
++|. ....|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+..|++++.+. |.+..+
T Consensus 210 -~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 287 (368)
T 1fch_A 210 -LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRS 287 (368)
T ss_dssp -HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 5666 678899999999999999999999999999999999999999999999999999999999999987 788999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 426 HLFAARFKEQNGDIDGARAAYQLVHTETSPGL-----------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 426 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~-----------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
|..++.++...|++++|+..|+++ +++.|++ ..+|..++.++..+|++++|..+++++++...
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEA-LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 999999999999999999999998 6778877 89999999999999999999999999888764
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=3.1e-20 Score=215.15 Aligned_cols=298 Identities=11% Similarity=0.014 Sum_probs=235.1
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 001064 120 RVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGL 195 (1167)
Q Consensus 120 ~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral 195 (1167)
..+++.+...+.+. ..|+..+..+.+.|++++|+.+|++++...|.+...|..++..+. ..|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Confidence 44455555555554 449999999999999999999999999999999999999999998 7899999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCC
Q 001064 196 AYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAP 275 (1167)
Q Consensus 196 ~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~ 275 (1167)
...+. ....|..++..+...|++++|..+|++++++.+.+...++...
T Consensus 127 ~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~----------------------------- 174 (365)
T 4eqf_A 127 ELQPN---NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK----------------------------- 174 (365)
T ss_dssp HHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------------
T ss_pred hcCCC---CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc-----------------------------
Confidence 96554 5788999999999999999999999999886554222111000
Q ss_pred CccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHH
Q 001064 276 SETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELE 355 (1167)
Q Consensus 276 ~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~ 355 (1167)
....
T Consensus 175 ----------------------------------------------------------------------------~~~~ 178 (365)
T 4eqf_A 175 ----------------------------------------------------------------------------GSPG 178 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------cchH
Confidence 0011
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~--~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
.+..++..+...|++++|+.+|++++...|. ++.+|..++.++...|++++|+.+|++++++. |+++.+|..++.++
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATL 257 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 2333344455677888999999999999998 89999999999999999999999999999987 78899999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc------CchHHHHHHHHHH
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS------QTLPMLYAQYSRF 507 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~------~~~~~l~~~~a~~ 507 (1167)
...|++++|+..|+++ ++++|++..+|..++.++.++|++++|+.+|+++++..|..... .....+|..++..
T Consensus 258 ~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRA-LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336 (365)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHH
Confidence 9999999999999998 78899999999999999999999999999999999998753210 1124678888888
Q ss_pred HHHHhCCHHHHHHHHHHHHhhc
Q 001064 508 LHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 508 ~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
+.. .|+.+.+..++++.+...
T Consensus 337 ~~~-~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 337 LSL-MDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHH-HTCHHHHHHHHTTCCGGG
T ss_pred HHH-cCcHHHHHHHHHhhHHHH
Confidence 665 999999999988876644
No 35
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=2.7e-20 Score=215.32 Aligned_cols=316 Identities=12% Similarity=0.060 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhccCCC----HHHHHHHHHHHHhhcCCHHHHHH
Q 001064 115 IVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVE-VYERAVQGVTYS----VDIWLHYCIFAINTYGDPETIRR 189 (1167)
Q Consensus 115 ~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~-l~eraL~~~P~s----~~lw~~ya~~~~~~~~~~~~Ar~ 189 (1167)
...+...++.+....|.+ +...+++++|++ .|++++...|.+ ...|+..+..+. ..|++++|+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~ 85 (368)
T 1fch_A 17 WDKLQAELEEMAKRDAEA----------HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRL-QEGDLPNAVL 85 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCchh----------hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHH-HCCCHHHHHH
Confidence 334444555555555542 223478999999 999999988866 466889998888 7899999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Q 001064 190 LFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAV 269 (1167)
Q Consensus 190 ~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~ 269 (1167)
.|++++... +....+|..++......|+++.|...|++++++.+.+...++..
T Consensus 86 ~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l------------------------ 138 (368)
T 1fch_A 86 LFEAAVQQD---PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL------------------------ 138 (368)
T ss_dssp HHHHHHHSC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------------------
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHH------------------------
Confidence 999999954 44578999999999999999999999999998866654443322
Q ss_pred HhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCC
Q 001064 270 AVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPL 349 (1167)
Q Consensus 270 ~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pl 349 (1167)
..+|...+++++|+..|+++++ +
T Consensus 139 -------------------------------------------------~~~~~~~g~~~~A~~~~~~~~~--------~ 161 (368)
T 1fch_A 139 -------------------------------------------------AVSFTNESLQRQACEILRDWLR--------Y 161 (368)
T ss_dssp -------------------------------------------------HHHHHHTTCHHHHHHHHHHHHH--------T
T ss_pred -------------------------------------------------HHHHHHcCCHHHHHHHHHHHHH--------h
Confidence 2345556677778888888887 4
Q ss_pred ChhhHHHHH----------------HHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 350 SVTELENWH----------------NYLDFIERDGDFNKVVKLYERCLIACAN--YPEYWIRYVLCMEASGSMDLAHNAL 411 (1167)
Q Consensus 350 d~~~~~~W~----------------~y~~~~e~~g~~~~a~~~yeral~~~p~--~~~~w~~ya~~l~~~g~~e~A~~vl 411 (1167)
+|.....|. .+..++ ..|++++|+.+|++++..+|. ...+|..++.++...|++++|+..|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 162 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp STTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444444443 334444 788999999999999999999 8999999999999999999999999
Q ss_pred HHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 412 ARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 412 ~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
++++.+. |+++.+|..++.++...|++++|+..|+++ +++.|++..+|..++.++.++|++++|+.+|++++...|..
T Consensus 241 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 241 TAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRA-LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999987 788999999999999999999999999998 78899999999999999999999999999999999998754
Q ss_pred C-----ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 492 E-----HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 492 ~-----~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
. ..+....+|..++.++.. .|++++|..+++++++..
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSM-LGQSDAYGAADARDLSTL 360 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHH-HTCGGGHHHHHTTCHHHH
T ss_pred CCccccccchhhHHHHHHHHHHHH-hCChHhHHHhHHHHHHHH
Confidence 1 112236789999999776 999999999999888653
No 36
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.2e-19 Score=210.38 Aligned_cols=280 Identities=8% Similarity=-0.039 Sum_probs=226.7
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
+...|+.++..+... +++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++...|.+...|..++.
T Consensus 64 ~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKE--GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 455699999999874 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCC
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPL 255 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~ 255 (1167)
.+. ..|++++|+..|++++...+.+. .+|..+. ....++..
T Consensus 142 ~~~-~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~-------------------------~~~~~~~~---------- 182 (365)
T 4eqf_A 142 SYT-NTSHQQDACEALKNWIKQNPKYK---YLVKNKK-------------------------GSPGLTRR---------- 182 (365)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHCHHHH---CC------------------------------------------------
T ss_pred HHH-ccccHHHHHHHHHHHHHhCccch---HHHhhhc-------------------------cchHHHHH----------
Confidence 998 78999999999999998654431 1121110 00000000
Q ss_pred cccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001064 256 SELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGF 335 (1167)
Q Consensus 256 ~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~ 335 (1167)
...+|...+++++|+..|
T Consensus 183 --------------------------------------------------------------l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 183 --------------------------------------------------------------MSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp --------------------------------------------------------------------CCHHHHHHHHHH
T ss_pred --------------------------------------------------------------HHHHHhhhhhHHHHHHHH
Confidence 001233345566667777
Q ss_pred HhhhcCCCcccCCCChh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 336 ETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 336 e~al~r~~~~v~pld~~--~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
+++++ ++|. ....|..++.++...|++++|+.+|++++..+|.+..+|..++.++...|++++|+..|++
T Consensus 201 ~~al~--------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 201 LEAAH--------QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHH--------HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHH--------hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77776 4444 5678888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------------LLEAIIKHANMERRLGNLEDAFSLY 481 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------------~~~~~~~~a~~e~r~g~~e~A~~~~ 481 (1167)
++++. |++..+|..++.++...|++++|+..|+++ +++.|+ +..+|..++..+..+|+.+.+..++
T Consensus 273 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 273 ALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTA-LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH-HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99987 788999999999999999999999999998 666766 3578999999999999999998888
Q ss_pred HHHHHhh
Q 001064 482 EQAIAIE 488 (1167)
Q Consensus 482 ~kAl~~~ 488 (1167)
++.+...
T Consensus 351 ~~~l~~~ 357 (365)
T 4eqf_A 351 LGDLDVL 357 (365)
T ss_dssp TTCCGGG
T ss_pred HhhHHHH
Confidence 8766655
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=6.2e-19 Score=199.70 Aligned_cols=287 Identities=8% Similarity=-0.022 Sum_probs=239.4
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001064 95 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC 174 (1167)
Q Consensus 95 ~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya 174 (1167)
.+.+.|+.++..+.. .+++++|+.+|++++..+|.+...|..++.++...|++++|+.+|++++...|.+...|..++
T Consensus 19 ~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLK--LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 356778888888876 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCC
Q 001064 175 IFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRP 254 (1167)
Q Consensus 175 ~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~ 254 (1167)
..+. ..|++++|+..|++++...+.+. .+|..+... .+ ... ..+
T Consensus 97 ~~~~-~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~-------------------~~-~~~-~~~----------- 140 (327)
T 3cv0_A 97 VSHT-NEHNANAALASLRAWLLSQPQYE---QLGSVNLQA-------------------DV-DID-DLN----------- 140 (327)
T ss_dssp HHHH-HTTCHHHHHHHHHHHHHTSTTTT---TC-----------------------------------------------
T ss_pred HHHH-HcCCHHHHHHHHHHHHHhCCccH---HHHHHHhHH-------------------HH-HHH-HHH-----------
Confidence 9888 68999999999999998655432 122111000 00 000 000
Q ss_pred CcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 001064 255 LSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREE-MYKKAKEFDSKII 333 (1167)
Q Consensus 255 ~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~-~y~~~~~~~~a~~ 333 (1167)
..... ++...+++++|+.
T Consensus 141 -------------------------------------------------------------~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 141 -------------------------------------------------------------VQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp ------------------------------------------------------------------CCTTSHHHHHHHHH
T ss_pred -------------------------------------------------------------HHHHhHHHHHcccHHHHHH
Confidence 00001 1344567778888
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
.|+++++ .++.....|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|...|++
T Consensus 160 ~~~~~~~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 160 LLHAALE--------MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHH--------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHh--------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8999887 56667889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------------LLEAIIKHANMERRLGNLEDAFSLY 481 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------------~~~~~~~~a~~e~r~g~~e~A~~~~ 481 (1167)
++... |++..+|..++.++...|++++|+..|+++ +++.|+ +..+|..++.++.++|++++|..++
T Consensus 232 a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 232 ALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRA-IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99987 788999999999999999999999999998 778898 8999999999999999999999999
Q ss_pred HHHHHhhhC
Q 001064 482 EQAIAIEKG 490 (1167)
Q Consensus 482 ~kAl~~~~~ 490 (1167)
++++...+.
T Consensus 310 ~~~l~~~~~ 318 (327)
T 3cv0_A 310 AQNVEPFAK 318 (327)
T ss_dssp TCCSHHHHH
T ss_pred HHHHHhcch
Confidence 999988753
No 38
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=1.6e-16 Score=192.43 Aligned_cols=191 Identities=8% Similarity=-0.025 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER----DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA 400 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~----~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~ 400 (1167)
.+++++++..|+++++ . .....+..++.++.. .+++++|+.+|++++.. .+++.++.++.++..
T Consensus 236 ~~~~~~A~~~~~~a~~--------~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAE--------Q--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDK 303 (490)
T ss_dssp CCCHHHHHHHHHHHHT--------T--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--------C--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Confidence 4567788888999886 2 234567788887777 78999999999999865 678999999999888
Q ss_pred c-----CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH--
Q 001064 401 S-----GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG---DIDGARAAYQLVHTETSPGLLEAIIKHANMERR-- 470 (1167)
Q Consensus 401 ~-----g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g---~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r-- 470 (1167)
. ++.++|+..|+++++. .++..++.++.++...| ++++|+..|+++ .+. ++..+++.++.++..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a-~~~--~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQ---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKA-AAK--GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-HHT--TCHHHHHHHHHHHHHTS
T ss_pred CCCCCcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHcCC
Confidence 7 8999999999999874 46788999999988866 889999999998 443 678999999999988
Q ss_pred --cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhhcCC---CHHHHHHHHH
Q 001064 471 --LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDSLDHVQL---SKPLLEALIH 541 (1167)
Q Consensus 471 --~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~~~Ar~i~~kal~~~p~---~~~l~~~~~~ 541 (1167)
.+++++|..+|++|++... +..+..++.++.. ..+++++|+..|++|++..|+ +...+..+..
T Consensus 378 g~~~~~~~A~~~~~~A~~~~~--------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQGL--------SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 8999999999999998642 6688888888654 268999999999999999855 5555444433
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.81 E-value=1.3e-18 Score=202.64 Aligned_cols=109 Identities=6% Similarity=0.044 Sum_probs=96.9
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhccCCCH
Q 001064 89 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS-MDKVVEVYERAVQGVTYSV 167 (1167)
Q Consensus 89 ~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~-~e~A~~l~eraL~~~P~s~ 167 (1167)
+|..+|.+.++|..++.++... +++++|+..|+++|.++|++..+|..++.++...|+ +++|+..|+++|.+.|.+.
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~--g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRD--ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred hhhCChhhHHHHHHHHHHHHHC--CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 4668899999999999999874 789999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001064 168 DIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 200 (1167)
Q Consensus 168 ~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~ 200 (1167)
.+|.+.+..+. ..|++++|+..|+++|...|.
T Consensus 167 ~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 167 QVWHHRRVLVE-WLRDPSQELEFIADILNQDAK 198 (382)
T ss_dssp HHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcc
Confidence 99999998887 667777777777777774443
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.80 E-value=3e-18 Score=199.49 Aligned_cols=254 Identities=9% Similarity=0.002 Sum_probs=188.8
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHhcCCCCC
Q 001064 125 FLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGD-PETIRRLFERGLAYVGTDYL 203 (1167)
Q Consensus 125 ~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~-~~~Ar~~feral~~~g~d~~ 203 (1167)
+|...|++..+|..++.++.+.|++++|+++|+++|.++|.+..+|...+..+. ..|+ +++|+..|+++|...|.+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~-- 165 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKN-- 165 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCC--
Confidence 456778888999999999999999999999999999999999999999988887 5564 777777766666633332
Q ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhh
Q 001064 204 SFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVK 283 (1167)
Q Consensus 204 s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~ 283 (1167)
T Consensus 166 -------------------------------------------------------------------------------- 165 (382)
T 2h6f_A 166 -------------------------------------------------------------------------------- 165 (382)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHH
Q 001064 284 ANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF 363 (1167)
Q Consensus 284 ~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~ 363 (1167)
..+|..++..
T Consensus 166 ----------------------------------------------------------------------~~a~~~~g~~ 175 (382)
T 2h6f_A 166 ----------------------------------------------------------------------YQVWHHRRVL 175 (382)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 2223333333
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH-cCCHHHH
Q 001064 364 IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ-NGDIDGA 442 (1167)
Q Consensus 364 ~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~-~g~~~~A 442 (1167)
+...|++++|+..|+++|..+|.+..+|+.++.++...|++++|+..|++++++. |++..+|..++.++.. .|.+++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 3445666667777777777777777777777777777777777777777777766 6677777777777766 4444555
Q ss_pred -----HHHHHHHhhhcCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---
Q 001064 443 -----RAAYQLVHTETSPGLLEAIIKHANMERRLG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS--- 512 (1167)
Q Consensus 443 -----~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g--~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~--- 512 (1167)
+..|+++ ++++|++..+|+.++.++...| ++++|+..++++ +..+ ..+.++..++.++.. .
T Consensus 255 ~~~~el~~~~~A-l~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p------~~~~al~~La~~~~~-~~~~ 325 (382)
T 2h6f_A 255 VLEREVQYTLEM-IKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH------SSPYLIAFLVDIYED-MLEN 325 (382)
T ss_dssp HHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC------CCHHHHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC------CCHHHHHHHHHHHHH-Hhcc
Confidence 4778887 6788999889988888887777 688888888776 4443 336677788888665 4
Q ss_pred -----CC-HHHHHHHHHHH-HhhcCCCHHHHHHHHH
Q 001064 513 -----RN-AEKARQILVDS-LDHVQLSKPLLEALIH 541 (1167)
Q Consensus 513 -----g~-~~~Ar~i~~ka-l~~~p~~~~l~~~~~~ 541 (1167)
++ +++|+++|+++ ++++|....+|..++.
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 23 59999999999 9999999999965543
No 41
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=3.1e-18 Score=193.89 Aligned_cols=275 Identities=11% Similarity=0.054 Sum_probs=200.9
Q ss_pred CCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001064 66 GAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR 145 (1167)
Q Consensus 66 ~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~ 145 (1167)
.+..+..+...+++++++..|+++++.+|.+..+|..++..+... +++++|...|++++..+|.+...|..++.++..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 344455555569999999999999999999999999999999874 799999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH-HH-HHHHhhhHHH
Q 001064 146 VGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKY-IE-YEYMQQEWSR 223 (1167)
Q Consensus 146 ~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y-~~-~e~~~~~~~~ 223 (1167)
.|++++|++.|++++...|.+..+|..+...... .. ..+ .+ .. +....+++++
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------------------~~~-~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVD------ID------------------DLN-VQSEDFFFAAPNEYRE 156 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC---------------------------------------------CCTTSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH------HH------------------HHH-HHHHhHHHHHcccHHH
Confidence 9999999999999999999988877766222110 00 000 00 00 1122355566
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCcccc
Q 001064 224 VAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSA 303 (1167)
Q Consensus 224 A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~ 303 (1167)
|..+|+++++..+.+...++..
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~l---------------------------------------------------------- 178 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASL---------------------------------------------------------- 178 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHH----------------------------------------------------------
T ss_pred HHHHHHHHHhhCCCCHHHHHHH----------------------------------------------------------
Confidence 6666666665544433222211
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001064 304 GLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 304 ~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~ 383 (1167)
..+|...+++++|+..|+++++ ++|.....|..++..+...|++++|+..|++++..
T Consensus 179 ---------------a~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 179 ---------------GVLYNLSNNYDSAAANLRRAVE--------LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp ---------------HHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHhccHHHHHHHHHHHHH--------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1123344555556666666665 45555667777777777888888888888888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc------------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR------------LPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~------------~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
+|.+..+|..++.++...|++++|...|++++.+. |. ...+|..++.++...|++++|..+++++
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888888888888888888888888888877 55 6788888888888888888888888765
No 42
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=6.1e-15 Score=178.38 Aligned_cols=372 Identities=10% Similarity=-0.010 Sum_probs=292.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHH
Q 001064 82 EEDRLWNIVKANSSDFSAWTALLEETEKL--AQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEV 155 (1167)
Q Consensus 82 a~~~l~~~l~~nP~d~~aw~~L~~~~~~~--~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l 155 (1167)
++..++++.+ +.|.++++.|+..+..- ..+++++|...|+++++. .+..++..++.++.. .+++++|++.
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4566665544 77999999999988751 036899999999999987 678999999999999 8999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hhhHHHHHHHH
Q 001064 156 YERAVQGVTYSVDIWLHYCIFAINT---YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM----QQEWSRVAMIY 228 (1167)
Q Consensus 156 ~eraL~~~P~s~~lw~~ya~~~~~~---~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~----~~~~~~A~~iy 228 (1167)
|++++.. .+...+..++.++... .+++++|...|++++.. + ....+..++.+... .+++++|+..|
T Consensus 102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G----RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999985 5889999999888831 57999999999999973 2 35667777777666 67899999999
Q ss_pred HHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchH
Q 001064 229 TRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEA 308 (1167)
Q Consensus 229 ~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~ 308 (1167)
+++++.. +...++....
T Consensus 175 ~~a~~~~--~~~a~~~Lg~------------------------------------------------------------- 191 (490)
T 2xm6_A 175 SKAAEQG--NVWSCNQLGY------------------------------------------------------------- 191 (490)
T ss_dssp HHHHHTT--CHHHHHHHHH-------------------------------------------------------------
T ss_pred HHHHHCC--CHHHHHHHHH-------------------------------------------------------------
Confidence 9998752 2233332221
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 001064 309 EELEKYIAVREEMYKK----AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER----DGDFNKVVKLYERC 380 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~----~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~----~g~~~~a~~~yera 380 (1167)
+|.. .+++++|+..|+++++ .+ +...+..++.++.. .+++++|+.+|+++
T Consensus 192 ------------~y~~g~g~~~~~~~A~~~~~~a~~--------~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 192 ------------MYSRGLGVERNDAISAQWYRKSAT--------SG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp ------------HHHHTSSSCCCHHHHHHHHHHHHH--------TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ------------HHhcCCCCCcCHHHHHHHHHHHHH--------CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 2222 3455667777888876 22 34568888888776 78999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc-----CCHHHHHHHHHHHhh
Q 001064 381 LIACANYPEYWIRYVLCMEA----SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN-----GDIDGARAAYQLVHT 451 (1167)
Q Consensus 381 l~~~p~~~~~w~~ya~~l~~----~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~-----g~~~~A~~~~~~a~~ 451 (1167)
+.. .+++.++.++.++.. .++.++|+..|+++++. .++..++.++.++... +++++|+..|+++ .
T Consensus 250 ~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a-~ 323 (490)
T 2xm6_A 250 AEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS-A 323 (490)
T ss_dssp HTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH-H
T ss_pred HHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH-H
Confidence 876 678899999999888 88999999999999874 5788999999999888 8999999999998 4
Q ss_pred hcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHH
Q 001064 452 ETSPGLLEAIIKHANMERRLG---NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDS 525 (1167)
Q Consensus 452 ~~~P~~~~~~~~~a~~e~r~g---~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~~~Ar~i~~ka 525 (1167)
+. ++..+++.++.++.+.| ++++|+.+|+++++... +..+..++.++.. ..+++++|...|+++
T Consensus 324 ~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~--------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 324 EQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE--------KAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred hc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 43 56788888898888766 89999999999998731 6688888888543 158999999999999
Q ss_pred HhhcCCCHHHHHHHHHhHhh-CCChhHHHHHHHHHHHHhhcCC
Q 001064 526 LDHVQLSKPLLEALIHFESI-QSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 526 l~~~p~~~~l~~~~~~~e~~-~~~~~~~~~ar~l~eral~~~~ 567 (1167)
++.. +...+..+..+... .+...+.+.+...|++++...+
T Consensus 394 ~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 394 AEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9864 46666666665543 2333447889999999988763
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=3.9e-17 Score=174.94 Aligned_cols=197 Identities=13% Similarity=0.050 Sum_probs=172.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
+...|..++..+...|++++|+..|++++..+|.++++|+.++.++...|++++|+..|++++++. |+++..|+.++.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999999999999999999999988 8999999999999
Q ss_pred HHHc-----------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH
Q 001064 433 KEQN-----------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY 501 (1167)
Q Consensus 433 ~e~~-----------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~ 501 (1167)
+... |++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++++++. .. +.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------~~~~ 154 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDA-ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT------PEIR 154 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC------HHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc------hHHH
Confidence 9999 9999999999998 78999999999999999999999999999999999987 32 6789
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHH
Q 001064 502 AQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKF 562 (1167)
Q Consensus 502 ~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~era 562 (1167)
..++.++.. .|++++|+..|+++++..|++..++..++.+....++ .+.+...|+++
T Consensus 155 ~~la~~~~~-~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLS-MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK---AEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHH
Confidence 999999776 9999999999999999999999999988888877765 44566666655
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8e-16 Score=167.51 Aligned_cols=130 Identities=9% Similarity=-0.043 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 405 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e 405 (1167)
+++++++..|++++. .++.....|..++..+...|++++|+..|++++..+|.+..+|..++.++...|+++
T Consensus 119 ~~~~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (258)
T 3uq3_A 119 RNAEKELKKAEAEAY--------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFP 190 (258)
T ss_dssp HHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHH--------cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHH
Confidence 334445555666665 566667778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLLEAIIKHA 465 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a 465 (1167)
+|...|++++... |+++.+|+.++.++...|++++|+..|+++ +++. |++..++..+.
T Consensus 191 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 191 EAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA-RTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHhChhhcCCCchHHHHHHHH
Confidence 8888888888876 677888888888888888888888888887 5666 76666655443
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=3.9e-16 Score=172.11 Aligned_cols=250 Identities=15% Similarity=0.087 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC-CHHHHHHHH
Q 001064 134 GYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL-SFPLWDKYI 212 (1167)
Q Consensus 134 ~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~-s~~lw~~y~ 212 (1167)
+.++.++..+...|++++|+.+|++++...|.+..+|...+..+. ..|++++|+..|++++. .+.+.. ....|..++
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555554 45555555555555555 332222 133455555
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCc
Q 001064 213 EYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPD 292 (1167)
Q Consensus 213 ~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~ 292 (1167)
......++++.|...|+++++..+.+...++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------------------------------------------------- 112 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYG------------------------------------------------- 112 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH-------------------------------------------------
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHH-------------------------------------------------
Confidence 5555555555555555555554333221111
Q ss_pred cccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHH-HHHHHcCChH
Q 001064 293 ATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYL-DFIERDGDFN 371 (1167)
Q Consensus 293 ~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~-~~~e~~g~~~ 371 (1167)
.+..+|...+++++|+..|+++++ ++|.....|..++ ..+ ..++++
T Consensus 113 ------------------------~l~~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~l~~~~~-~~~~~~ 159 (272)
T 3u4t_A 113 ------------------------QIGSYFYNKGNFPLAIQYMEKQIR--------PTTTDPKVFYELGQAYY-YNKEYV 159 (272)
T ss_dssp ------------------------HHHHHHHHTTCHHHHHHHHGGGCC--------SSCCCHHHHHHHHHHHH-HTTCHH
T ss_pred ------------------------HHHHHHHHccCHHHHHHHHHHHhh--------cCCCcHHHHHHHHHHHH-HHHHHH
Confidence 112244555666677777777776 5666677777777 444 345899
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhc--c-----ChHHHHHHHHHHHHcCCHHH
Q 001064 372 KVVKLYERCLIACANYPEYWIRYVLCMEASGS---MDLAHNALARATHVFVK--R-----LPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~---~e~A~~vl~rA~~~~~p--~-----~~~l~~~~a~~~e~~g~~~~ 441 (1167)
+|+..|++++...|.+...|+.++.++...++ +++|...|++++++... . ...+|..++.++...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999988888887 78899999999887621 1 12577778888888888888
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 442 ARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
|+..|+++ ++++|++..++-....+.
T Consensus 240 A~~~~~~a-l~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNI-LALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHH-HHHCTTCHHHHHHHC---
T ss_pred HHHHHHHH-HhcCccHHHHHHHhhhhh
Confidence 88888887 677888887776665544
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=5.6e-16 Score=181.05 Aligned_cols=329 Identities=9% Similarity=-0.037 Sum_probs=205.6
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc------cC
Q 001064 95 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQG------VT 164 (1167)
Q Consensus 95 ~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~------~P 164 (1167)
.....|+.++..+... +++++|+..|++++...|.+. .+|..++.++...|++++|+..|++++.. .|
T Consensus 7 ~~~~~l~~~g~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKS--GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455666777766653 677777777777777777763 56677777777777777777777777665 23
Q ss_pred CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHH
Q 001064 165 YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFS 244 (1167)
Q Consensus 165 ~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~ 244 (1167)
....+|...+.++. ..|++++|...|++++...+..... ...+ .++. ++..+|.
T Consensus 85 ~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~----------------~~~~-~~~~--------~l~~~~~ 138 (406)
T 3sf4_A 85 GEAKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDK----------------VGEA-RALY--------NLGNVYH 138 (406)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCH----------------HHHH-HHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccc----------------cchH-HHHH--------HHHHHHH
Confidence 34555666666655 5566777777777666643221000 0000 0000 0000010
Q ss_pred HHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHH
Q 001064 245 SFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKK 324 (1167)
Q Consensus 245 ~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~ 324 (1167)
....+.. .... .. +.. .. + ..
T Consensus 139 ~~g~~~~--------------------------~~~~-~~---------~~~-------~~---~-------------~a 159 (406)
T 3sf4_A 139 AKGKSFG--------------------------CPGP-QD---------VGE-------FP---E-------------EV 159 (406)
T ss_dssp HHHHTCC-------------------------------------------CC-------CC---H-------------HH
T ss_pred HcCCccc--------------------------cccc-ch---------hhh-------hh---h-------------hH
Confidence 0000000 0000 00 000 00 0 01
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH------HHHHHHHHH
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYVLCM 398 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~------~w~~ya~~l 398 (1167)
...+++|+..|++++.. +.-....+.....|..++..+...|++++|+..|++++..++...+ +|..++.++
T Consensus 160 ~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSL--VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 11244445555555431 0000123444567888899999999999999999999988665543 899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHHH
Q 001064 399 EASGSMDLAHNALARATHVFVKRL------PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHAN 466 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~------~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a~ 466 (1167)
...|++++|...|++++.+. +.. ..++..++.++...|++++|...|+++ +++.+. ...++..++.
T Consensus 238 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHH-HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH-HHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999987 433 568888999999999999999999997 444322 2567889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001064 467 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 515 (1167)
Q Consensus 467 ~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 515 (1167)
++...|++++|+.+|++++++.+..........++..++.++.. .|+.
T Consensus 316 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 363 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMV-LGLS 363 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH-hhHh
Confidence 99999999999999999999875432222234456666666544 5543
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=5.3e-16 Score=171.03 Aligned_cols=187 Identities=13% Similarity=0.102 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
..|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+..|++++++. |.++.+|+.++....
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHH
Confidence 4467777777888999999999999999999999999999999999999999999999999986 889999999994555
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhhCCCc--cCchHHHHHHHHHHHH
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN---LEDAFSLYEQAIAIEKGKEH--SQTLPMLYAQYSRFLH 509 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~---~e~A~~~~~kAl~~~~~~~~--~~~~~~l~~~~a~~~~ 509 (1167)
..+++++|+..|+++ +++.|++...|+.++.++..+|+ +++|+..|+++++....... ......++..++.++.
T Consensus 154 ~~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 154 YNKEYVKADSSFVKV-LELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 567999999999998 78899999999999999999988 89999999999998732111 0112357788888876
Q ss_pred HHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 510 LVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 510 ~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
. .|++++|+.+|+++++.+|++...+.....+..
T Consensus 233 ~-~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 233 I-NRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp H-TTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred H-cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 6 999999999999999999999988876655543
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=1.6e-16 Score=170.13 Aligned_cols=194 Identities=19% Similarity=0.148 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 396 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~ 396 (1167)
.+...+...+++++|+..|+++|+ ++|.+...|..++..+...|++++|+..|++++..+|.+.+.|+.++.
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~--------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALK--------ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT--------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 345678889999999999999998 889999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 397 CMEAS-----------GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 397 ~l~~~-----------g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
++... |++++|+..|++++++. |+++.+|+.++.++...|++++|+..|+++ ++++ ++..+|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~-~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQA-LALE-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHH-Hhcc-cchHHHHHHH
Confidence 99999 99999999999999988 899999999999999999999999999998 7788 9999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
.++...|++++|+..|+++++..|+. +.++..++.++.. .|++++|+..|+++..+
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~ 214 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKD------LDLRVRYASALLL-KGKAEEAARAAALEHHH 214 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHTC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHH-ccCHHHHHHHHHHHhhc
Confidence 99999999999999999999998643 6788889988766 99999999999987643
No 49
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.3e-15 Score=165.83 Aligned_cols=239 Identities=11% Similarity=0.025 Sum_probs=204.1
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC-------HH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS-------VD 168 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s-------~~ 168 (1167)
..+.|..++..+... +++++|..+|++++..+ .+..+|..++.++...|++++|+++|++++...|.+ ..
T Consensus 4 ~a~~~~~~g~~~~~~--~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKA--RQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 467899999999874 89999999999999999 899999999999999999999999999999998876 79
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 001064 169 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKE 248 (1167)
Q Consensus 169 lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~ 248 (1167)
+|...+..+. ..+++++|+..|++++...+. .......+++++|...|++++...+.+...++.
T Consensus 81 ~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 144 (258)
T 3uq3_A 81 SFARIGNAYH-KLGDLKKTIEYYQKSLTEHRT-----------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARL---- 144 (258)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH----
T ss_pred HHHHHHHHHH-HcccHHHHHHHHHHHHhcCch-----------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHH----
Confidence 9999999988 789999999999999996554 233445678999999999998876654433331
Q ss_pred HHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHH
Q 001064 249 FAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEF 328 (1167)
Q Consensus 249 ~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~ 328 (1167)
+..+|...+++
T Consensus 145 ---------------------------------------------------------------------~~~~~~~~~~~ 155 (258)
T 3uq3_A 145 ---------------------------------------------------------------------EGKEYFTKSDW 155 (258)
T ss_dssp ---------------------------------------------------------------------HHHHHHHTTCH
T ss_pred ---------------------------------------------------------------------HHHHHHHhcCH
Confidence 12345667788
Q ss_pred HHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 001064 329 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAH 408 (1167)
Q Consensus 329 ~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~ 408 (1167)
++|+..|+++++ +++.+...|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|.
T Consensus 156 ~~A~~~~~~a~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 156 PNAVKAYTEMIK--------RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHh--------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 889999999998 677778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh-----ccChHHHHHHH
Q 001064 409 NALARATHVFV-----KRLPEIHLFAA 430 (1167)
Q Consensus 409 ~vl~rA~~~~~-----p~~~~l~~~~a 430 (1167)
..|++++++.+ |++..++..++
T Consensus 228 ~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 228 ETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 99999999873 44455554443
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=5e-16 Score=167.79 Aligned_cols=210 Identities=12% Similarity=0.078 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
...+...+++++|+..|+++++ .++.....|..++..+...|++++|+..|++++...|.+..+|..++.++
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIE--------ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp ------------CCTTHHHHHT--------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHH--------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4567788999999999999998 67778899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 001064 399 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 478 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~ 478 (1167)
...|++++|+.+|++++... |++..+|..++.++...|++++|+.+|+++ +++.|++..+|..++.++.+.|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRA-VELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999987 788999999999999999999999999998 7889999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 479 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 479 ~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.+|++++...+. .+.++..++.++.. .|++++|+.+|+++++..|++...+..+..+...
T Consensus 180 ~~~~~~~~~~~~------~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 180 SQFAAVTEQDPG------HADAFYNAGVTYAY-KENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHhCcc------cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 999999998753 26688889988776 9999999999999999999999988777666544
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=1e-15 Score=179.87 Aligned_cols=293 Identities=10% Similarity=-0.024 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc------c
Q 001064 94 SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCY----GYWKKYADHEARVGSMDKVVEVYERAVQG------V 163 (1167)
Q Consensus 94 P~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~----~~W~~~a~~e~~~~~~e~A~~l~eraL~~------~ 163 (1167)
+.....+..++..+.. .+++++|+..|++++...|.+. .+|..++.++...|++++|+..|++++.. .
T Consensus 45 ~~~~~~l~~~g~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 122 (411)
T 4a1s_A 45 SSMCLELALEGERLCN--AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR 122 (411)
T ss_dssp HHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence 4445566677777766 3788888888888888888876 47888888888888888888888888876 3
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHH
Q 001064 164 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYF 243 (1167)
Q Consensus 164 P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~ 243 (1167)
+....+|..++.++. ..|++++|...|++++...... +. ++....
T Consensus 123 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~-----------------~~--------------~~~~~~--- 167 (411)
T 4a1s_A 123 LGEAKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQL-----------------GD--------------RLSEGR--- 167 (411)
T ss_dssp HHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH-----------------TC--------------HHHHHH---
T ss_pred hHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHh-----------------hc--------------hHHHHH---
Confidence 455566666666665 4566666666666666521100 00 000000
Q ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHH
Q 001064 244 SSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYK 323 (1167)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~ 323 (1167)
.+..+..+|.
T Consensus 168 ----------------------------------------------------------------------~~~~l~~~~~ 177 (411)
T 4a1s_A 168 ----------------------------------------------------------------------ALYNLGNVYH 177 (411)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 0001111222
Q ss_pred HHHH----------HHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc------CCC
Q 001064 324 KAKE----------FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC------ANY 387 (1167)
Q Consensus 324 ~~~~----------~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~------p~~ 387 (1167)
..++ +.++... +++|+..|++++... +..
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~-----------------------------------~~~A~~~~~~al~~~~~~~~~~~~ 222 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEA-----------------------------------LTRAVEFYQENLKLMRDLGDRGAQ 222 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCcccccccchhhhhhhhHH-----------------------------------HHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2232 2222222 445555566655542 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-----
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG----- 456 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~----- 456 (1167)
..+|..++.++...|++++|...|++++.+. +... .++..++.++...|++++|+..|+++ +++.+.
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~ 300 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIA-REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT-LALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH-HHHHHHcCCHH
Confidence 4588999999999999999999999999987 3332 37888999999999999999999998 454443
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 001064 457 -LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 457 -~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
...+|..++.++...|++++|+.+|++++...+..........++..++.++.. .|++++|+.+|++++++...
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA-IGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhh
Confidence 256789999999999999999999999999876432222334577888888776 99999999999999988764
No 52
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=1.2e-15 Score=171.31 Aligned_cols=255 Identities=8% Similarity=0.018 Sum_probs=183.6
Q ss_pred CCCchHHHHHHHHHHhCCCC-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSD-FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEV 155 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d-~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l 155 (1167)
|.++.++..++++...+|.+ .++.+.+++.+..+ |+++.|+..++. ..|.+..++..++.++...++.++|++.
T Consensus 13 g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~--g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQ--RKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHT--TCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHC--CCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 78888888888888888887 56778888877764 688888877765 2555667777888888888889999999
Q ss_pred HHHHHhc--cCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 156 YERAVQG--VTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 156 ~eraL~~--~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
|++++.. +|.+..+|+..+..+. ..|++++|..+|++ | .+..+|...+..+..+|+++.|...|+++++
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQ-----G---DSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTT-----C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhC-----C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9998875 5888888888888888 67889999888887 2 3467888888888888888888888888876
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
..+.+.....
T Consensus 159 ~~p~~~~~~l---------------------------------------------------------------------- 168 (291)
T 3mkr_A 159 QDEDATLTQL---------------------------------------------------------------------- 168 (291)
T ss_dssp HCTTCHHHHH----------------------------------------------------------------------
T ss_pred hCcCcHHHHH----------------------------------------------------------------------
Confidence 5443210000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 393 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ 393 (1167)
...|+.+....|++++|+.+|++++..+|.++.+|..
T Consensus 169 -------------------------------------------~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~ 205 (291)
T 3mkr_A 169 -------------------------------------------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205 (291)
T ss_dssp -------------------------------------------HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred -------------------------------------------HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 0011111223456667777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhcCCChHHH
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG-ARAAYQLVHTETSPGLLEA 460 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~-A~~~~~~a~~~~~P~~~~~ 460 (1167)
++.++...|++++|...|++++.+. |+++.+|..++.++...|+.++ +..+++++ ++++|+++.+
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~-~~~~P~~~~~ 271 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQL-KDAHRSHPFI 271 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhCCCChHH
Confidence 7777777777777777777777766 6777777777777777777654 45666666 6667777654
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.70 E-value=8.7e-16 Score=159.07 Aligned_cols=173 Identities=16% Similarity=0.132 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
..+|..++..+...|++++|+..|+++|..+|.+.++|+.++.++...|++++|...+.+++... ++...++...+.++
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999987 88999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
...++++.|...+.++ ..+.|++..+|..++.++.++|++++|+.+|+++++..|. .+.+|..+|.++.. .|
T Consensus 84 ~~~~~~~~a~~~~~~a-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~lg~~~~~-~g 155 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRA-IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------FIRAYQSIGLAYEG-KG 155 (184)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TT
T ss_pred HHcCCHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch------hhhHHHHHHHHHHH-CC
Confidence 9999999999999998 7889999999999999999999999999999999999864 37789999999776 99
Q ss_pred CHHHHHHHHHHHHhhcCCCHHH
Q 001064 514 NAEKARQILVDSLDHVQLSKPL 535 (1167)
Q Consensus 514 ~~~~Ar~i~~kal~~~p~~~~l 535 (1167)
++++|+..|++||+.+|++..+
T Consensus 156 ~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHhCCccCHHH
Confidence 9999999999999999976543
No 54
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=1.5e-17 Score=178.47 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=73.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCC--CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..++|||+|||+++|+++|+++|++|| .|++|+| ++++.+|++||||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i-~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKF-FENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEE-EECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 458999999999999999999999999 9999876 66888999999999999999999999986 8999999999999
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
++++
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 8753
No 55
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=5.8e-15 Score=165.62 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 405 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e 405 (1167)
++.++++..|++.+.. ..+|.+...|..++..+...|++++|+.+|++ |.+.++|...+.++...|+.+
T Consensus 79 ~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 79 SRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp TTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHH
Confidence 3445555666666541 13466677788888888899999999999988 888999999999999999999
Q ss_pred HHHHHHHHHHHhhhccChHHHHH--HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLF--AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 483 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~--~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~k 483 (1167)
+|...|++++... |+.....+. +..+....|++++|+.+|+++ ++..|++..+|..++.++.++|++++|+.+|++
T Consensus 148 ~A~~~l~~~~~~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~-l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 148 LARKELKKMQDQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999887 666544443 345555568999999999998 677999999999999999999999999999999
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHhhcCCCHHHHH
Q 001064 484 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK-ARQILVDSLDHVQLSKPLLE 537 (1167)
Q Consensus 484 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~-Ar~i~~kal~~~p~~~~l~~ 537 (1167)
++...|+ .+.++.+++.++.. .|+.++ +..+++++++..|+++.+.+
T Consensus 226 al~~~p~------~~~~l~~l~~~~~~-~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 226 ALDKDSG------HPETLINLVVLSQH-LGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHCTT------CHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhCCC------CHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999864 37788899988776 787754 68999999999999987763
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.69 E-value=2.7e-15 Score=175.32 Aligned_cols=315 Identities=12% Similarity=0.009 Sum_probs=216.1
Q ss_pred ccccccCCCCchHHHHHHHHHHhCCCC----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 001064 70 GQELVDGSAMSGEEDRLWNIVKANSSD----FSAWTALLEETEKLAQDNIVKIRRVYDAFLAE------FPLCYGYWKKY 139 (1167)
Q Consensus 70 ~~~~~~~~~~~~a~~~l~~~l~~nP~d----~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~------~P~~~~~W~~~ 139 (1167)
+..+...|++++++..|+++++.+|.+ ...|..++..+... +++++|...|++++.. .|....+|..+
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--HDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 344455589999999999999999999 46888999998874 8999999999999988 45557899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001064 140 ADHEARVGSMDKVVEVYERAVQGVTYS------VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 213 (1167)
Q Consensus 140 a~~e~~~~~~e~A~~l~eraL~~~P~s------~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~ 213 (1167)
+.++...|++++|+..|++++...+.. ..+|..++.++. ..|+...+.. . ...+..
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~--~---~~~~~~------------ 155 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH-AKGKSFGCPG--P---QDVGEF------------ 155 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHHTCC------------CCC------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HcCCcccccc--c---chhhhh------------
Confidence 999999999999999999999987532 224444444443 2222000000 0 000000
Q ss_pred HHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCcc
Q 001064 214 YEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDA 293 (1167)
Q Consensus 214 ~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~ 293 (1167)
+......++.|...|++++.+-....+
T Consensus 156 ~~~a~~~~~~A~~~~~~al~~~~~~~~----------------------------------------------------- 182 (406)
T 3sf4_A 156 PEEVRDALQAAVDFYEENLSLVTALGD----------------------------------------------------- 182 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccC-----------------------------------------------------
Confidence 001111255555555555432110000
Q ss_pred ccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHH
Q 001064 294 TEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKV 373 (1167)
Q Consensus 294 ~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a 373 (1167)
.......+..+..+|...+++++|+..|+++++.. .-.+........|..++..+...|++++|
T Consensus 183 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 183 --------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 00000122233456777888888888888888610 00001122234788888999999999999
Q ss_pred HHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHH
Q 001064 374 VKLYERCLIACANY------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGA 442 (1167)
Q Consensus 374 ~~~yeral~~~p~~------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A 442 (1167)
+..|++++...+.. ..+|..++.++...|++++|...|++++.+.... ...++..++.++...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999887655 6789999999999999999999999999986321 256888899999999999999
Q ss_pred HHHHHHHhhhc------CCChHHHHHHHHHHHHHcCCH
Q 001064 443 RAAYQLVHTET------SPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 443 ~~~~~~a~~~~------~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
+..|+++ +++ .+....++..++.++...|+.
T Consensus 327 ~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 327 MHFAEKH-LEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999997 443 233355677777777777655
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=3.7e-15 Score=168.41 Aligned_cols=160 Identities=14% Similarity=-0.003 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCC
Q 001064 370 FNKVVKLYERCLIAC------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGD 438 (1167)
Q Consensus 370 ~~~a~~~yeral~~~------p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~ 438 (1167)
+++|+..|++++... +....+|..++.++...|++++|...+++++.+.+.. ...++..++.++...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 344555555554431 2234578889999999999999999999999876321 12378888999999999
Q ss_pred HHHHHHHHHHHhhhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 439 IDGARAAYQLVHTETSPGL------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 439 ~~~A~~~~~~a~~~~~P~~------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
+++|...|+++ +++.+.. ..++..++.++...|++++|+.+|++++...+..........++..++.++.. .
T Consensus 239 ~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~ 316 (338)
T 3ro2_A 239 FETASEYYKKT-LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA-L 316 (338)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHH-HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-c
Confidence 99999999997 4444333 56788899999999999999999999999876432222334567888888776 9
Q ss_pred CCHHHHHHHHHHHHhhcCC
Q 001064 513 RNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~~~p~ 531 (1167)
|++++|+.+|+++++..+.
T Consensus 317 g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHC---
T ss_pred CChHHHHHHHHHHHHHHHh
Confidence 9999999999999987654
No 58
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=1e-16 Score=161.98 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=76.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|..|.| +.++.+++++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5699999999999999999999999999999875 56777899999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++.+
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87644
No 59
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=4.8e-16 Score=153.80 Aligned_cols=84 Identities=20% Similarity=0.393 Sum_probs=76.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
...++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKI-VCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEE-EEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35799999999999999999999999999999876 56777899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987643
No 60
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=147.20 Aligned_cols=81 Identities=20% Similarity=0.397 Sum_probs=76.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||+++|+++|+++|++||.|.+|+| ++++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKL-IRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEe-eecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 36799999999999999999999999999999886 67888999999999999999999999976 99999999999999
Q ss_pred ccC
Q 001064 1108 RRP 1110 (1167)
Q Consensus 1108 ~r~ 1110 (1167)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 986
No 61
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.68 E-value=8.6e-17 Score=167.21 Aligned_cols=120 Identities=16% Similarity=0.263 Sum_probs=99.2
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcc------------------------------------cch
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST------------------------------------ESA 761 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~------------------------------------~~~ 761 (1167)
..+|+..||++||+++|++|..|..||+++|.|+ |.++.. .-.
T Consensus 10 ~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS-~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l~ 88 (221)
T 1of5_A 10 LGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFS-VSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLS 88 (221)
T ss_dssp TCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEE-EEECCC--------------------------------------C
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEE-EEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhhc
Confidence 3579999999999999999999999999986554 555311 134
Q ss_pred hchHHHHHHHhcCCCcceeE------eeeeccccCC-CceEEEEEEEEEecCcc--------------------------
Q 001064 762 SSMLDIHSLVISLNFTAIEI------KTINSLGSWN-GGVLVMVSGSVKTKEFC-------------------------- 808 (1167)
Q Consensus 762 ~~~~~i~~~~~~l~~~~~~i------~~~d~q~~~~-~~i~v~v~G~~~~~~~~-------------------------- 808 (1167)
.|.++|.++|.+||.+++.| .+||||+... +||+|+|+|.++..+..
T Consensus 89 ~G~~~I~~~l~~LPkT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (221)
T 1of5_A 89 IGQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNST 168 (221)
T ss_dssp BHHHHHHHHHHHSCCEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-----------------------------
T ss_pred cCHHHHHHHHHhCCCeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCccccccccccccccccccccccccccc
Confidence 57889999999999888888 5999999765 69999999999875432
Q ss_pred -----ccceeEEEEEEeeeCCeEEEEcceEEeccC
Q 001064 809 -----RRRKFVQTFFLAPQEKGYFVLNDIFHFLDE 838 (1167)
Q Consensus 809 -----~~~~F~q~F~L~~~~~~y~v~nd~fr~~~~ 838 (1167)
..+.|.|||+|.|.+++|+|.||+||+-..
T Consensus 169 ~~~~~~~rsF~RTFvL~P~~~~~~I~nD~l~ir~~ 203 (221)
T 1of5_A 169 SNNKLSKKSFDRTWVIVPMNNSVIIASDLLTVRAY 203 (221)
T ss_dssp CCSCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccccCCccceEEEEEEEecCCeEEEEeeEEEeecC
Confidence 579999999999998899999999998763
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=1.6e-14 Score=157.24 Aligned_cols=210 Identities=10% Similarity=-0.001 Sum_probs=190.8
Q ss_pred CChhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHH
Q 001064 349 LSVTE-LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 349 ld~~~-~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
.+|.. ...|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++... |.+..+|+
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 109 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLN 109 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHH
Confidence 56665 78899999999999999999999999999999999999999999999999999999999999987 78899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHH
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYS 505 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a 505 (1167)
.++.++...|++++|+.+|+++ +. ..|.+..+|..++.++...|++++|+.+|++++...+. .+.++..++
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la 182 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEA-SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------QPSVALEMA 182 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH-HhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------cHHHHHHHH
Confidence 9999999999999999999998 66 68999999999999999999999999999999998753 267888899
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 506 RFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 506 ~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
.++.. .|++++|..+|+++++..|++...+..++.+....++ .+.+..++++++...+++.
T Consensus 183 ~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 183 DLLYK-EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTSH
T ss_pred HHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCCCH
Confidence 98776 9999999999999999999999998888888877776 5668899999988877654
No 63
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.67 E-value=1.3e-16 Score=171.78 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=101.2
Q ss_pred chhHhHHHHHHHHhhhcC-cccccccccCCceEEEEcCCcc------------------------------cchhchHHH
Q 001064 719 AQVGSYFVGQYYQVLQQQ-PDLVHQFYSDASSMIRVDGDST------------------------------ESASSMLDI 767 (1167)
Q Consensus 719 ~~vg~~Fv~~YY~~l~~~-p~~l~~fY~~~s~~~~~~g~~~------------------------------~~~~~~~~i 767 (1167)
.+||..||++||+++|++ |..|.++|+++|.| +|+++.. ....|.++|
T Consensus 15 ~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~f-S~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~~I 93 (250)
T 1jkg_B 15 KSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACC-SLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNV 93 (250)
T ss_dssp HHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEE-EEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHHHH
T ss_pred HHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEE-EEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHHHH
Confidence 479999999999999998 99999999998655 4564321 135678899
Q ss_pred HHHHhcCCCcceeEe--eeeccccCCCceEEEEEEEEEecC---ccccceeEEEEEEeee-CCeEEEEcceEEeccC
Q 001064 768 HSLVISLNFTAIEIK--TINSLGSWNGGVLVMVSGSVKTKE---FCRRRKFVQTFFLAPQ-EKGYFVLNDIFHFLDE 838 (1167)
Q Consensus 768 ~~~~~~l~~~~~~i~--~~d~q~~~~~~i~v~v~G~~~~~~---~~~~~~F~q~F~L~~~-~~~y~v~nd~fr~~~~ 838 (1167)
.++|.+||.++|.+. ++||++..+++|+|+|+|.++..+ ..+.|.|+|||+|.|. +++|+|.||+||+.+.
T Consensus 94 ~~~l~~LP~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~~ 170 (250)
T 1jkg_B 94 VAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNA 170 (250)
T ss_dssp HHHHTTSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEEC
T ss_pred HHHHHhCCCeeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEECC
Confidence 999999998888776 899999888899999999999865 2378999999999997 5789999999998863
No 64
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=9.3e-15 Score=159.13 Aligned_cols=207 Identities=8% Similarity=-0.020 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 393 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ 393 (1167)
....+...|...+++++|+..|+++++ +++.....|..++..+...|++++|+.+|++++...|.+..+|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALE--------IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh--------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 344456678889999999999999998 667778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001064 394 YVLCMEASGSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 471 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 471 (1167)
++.++...|++++|+.+|++++. .. |....++..++.++...|++++|+.+|+++ +++.|++..+|+.++.++...
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMKKPAQAKEYFEKS-LRLNRNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999998 54 667889999999999999999999999998 788999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHH
Q 001064 472 GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 537 (1167)
Q Consensus 472 g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~ 537 (1167)
|++++|+.+|++++...+. .+..+..++.++.. .|++++|+.+|+++++..|++..++.
T Consensus 189 g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGGGQ------NARSLLLGIRLAKV-FEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp TCHHHHHHHHHHHHTTSCC------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999998753 25677778888666 99999999999999999999987663
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=1.2e-14 Score=164.19 Aligned_cols=299 Identities=10% Similarity=-0.045 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------cCCC
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC----YGYWKKYADHEARVGSMDKVVEVYERAVQG------VTYS 166 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~----~~~W~~~a~~e~~~~~~e~A~~l~eraL~~------~P~s 166 (1167)
...|+..+..+.. .+++++|+..|++++...|.+ ..+|..++.++...|++++|+++|++++.. .+..
T Consensus 5 ~~~l~~~g~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCK--SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHH--hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 4567778888776 489999999999999999998 478889999999999999999999999887 3445
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHH
Q 001064 167 VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLS---FPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYF 243 (1167)
Q Consensus 167 ~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s---~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~ 243 (1167)
..+|...+..+. ..|++++|...|++++...+..... ..++...+......++
T Consensus 83 ~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------- 138 (338)
T 3ro2_A 83 AKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK----------------------- 138 (338)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc-----------------------
Confidence 677888888887 6799999999999998865432111 1122222222222222
Q ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHH
Q 001064 244 SSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYK 323 (1167)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~ 323 (1167)
+........ . + . .. . .
T Consensus 139 -----~~~~~~~~~--------------------~-~-------~---------------~~--~--------------~ 154 (338)
T 3ro2_A 139 -----SFGCPGPQD--------------------T-G-------E---------------FP--E--------------D 154 (338)
T ss_dssp -----TSSSSSCC-----------------------------------------------CC--H--------------H
T ss_pred -----ccccchhhh--------------------h-h-------h---------------hh--h--------------h
Confidence 000000000 0 0 0 00 0 0
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH------HHHHHHHHH
Q 001064 324 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP------EYWIRYVLC 397 (1167)
Q Consensus 324 ~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~------~~w~~ya~~ 397 (1167)
..+.+++++..|++++.. +.-....+.....|..++..+...|++++|+..|++++..++... .+|..++.+
T Consensus 155 a~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 232 (338)
T 3ro2_A 155 VRNALQAAVDLYEENLSL--VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 232 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 001112222222222210 000001223345677777888888999999999999988754332 388899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhccC------hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHH
Q 001064 398 MEASGSMDLAHNALARATHVFVKRL------PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHA 465 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~p~~------~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a 465 (1167)
+...|++++|...|++++.+. +.. ..++..++.++...|++++|+..|+++ +++.+. ...+|..++
T Consensus 233 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la 310 (338)
T 3ro2_A 233 YIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELKDRIGEGRACWSLG 310 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHhcCCcHHHHHHHHHHH
Confidence 999999999999999999877 333 567788899999999999999999987 444332 245788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.++.+.|++++|..+|++++.+.+
T Consensus 311 ~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 311 NAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHcCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999864
No 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=3.4e-14 Score=150.99 Aligned_cols=209 Identities=12% Similarity=0.034 Sum_probs=186.4
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHH
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 429 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~ 429 (1167)
++.....|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|..+|++++... |.+..+|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999999999987 7889999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHH
Q 001064 430 ARFKEQN-GDIDGARAAYQLVHTE--TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSR 506 (1167)
Q Consensus 430 a~~~e~~-g~~~~A~~~~~~a~~~--~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~ 506 (1167)
+.++... |++++|+.+|+++ ++ ..|.+..+|..++.++...|++++|+.+|++++...|. .+.++..++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~ 155 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKA-LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELAR 155 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH-HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH-HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHH
Confidence 9999999 9999999999998 56 56888899999999999999999999999999998764 2668888998
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhcC-CCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 507 FLHLVSRNAEKARQILVDSLDHVQ-LSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 507 ~~~~~~g~~~~Ar~i~~kal~~~p-~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
++.. .|++++|..+|+++++..| ++...+...+.+....+. .+.+..+++.++...++++
T Consensus 156 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 156 TKML-AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHH-HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCCCH
Confidence 8776 9999999999999999999 999888777777777666 4557777888777666554
No 67
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=4.7e-15 Score=160.08 Aligned_cols=205 Identities=8% Similarity=-0.002 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|...+..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+.+|++++... |....++..++.++
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 35577777777889999999999999999999999999999999999999999999999999987 78899999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
...|++++|+.+|+++ +++.|++..+|..++.++.+.|++++|+.+|++++...+. .+.++..++.++.. .|
T Consensus 102 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~-~~ 173 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKA-LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------DTEARFQFGMCLAN-EG 173 (243)
T ss_dssp HHTTCHHHHHHHHHHH-HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-HT
T ss_pred HHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHH-cC
Confidence 9999999999999998 7889999999999999999999999999999999998763 26688889988776 99
Q ss_pred CHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 514 NAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 514 ~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
++++|+.+|+++++..|++..+|..++.+....++ .+.+..+|++++...+++.
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcchH
Confidence 99999999999999999999999988888888776 4558899999999887664
No 68
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=3.7e-15 Score=164.18 Aligned_cols=157 Identities=10% Similarity=-0.051 Sum_probs=134.0
Q ss_pred ccccCCCCchHHHHHHHHHHh----CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 001064 72 ELVDGSAMSGEEDRLWNIVKA----NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG 147 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~----nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~ 147 (1167)
.+...+++++++..|+++++. +|.+..+|+.++..+... +++++|...|++++..+|.+..+|..++.++...|
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 334447899999999999997 467889999999999874 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHH
Q 001064 148 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMI 227 (1167)
Q Consensus 148 ~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~i 227 (1167)
++++|+++|++++...|.+..+|..++..+. ..|++++|+..|++++...+.+ .. +..+.......++++.|..+
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~---~~-~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAFYQDDPND---PF-RSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC---HH-HHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCC---hH-HHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999998 6899999999999999976654 22 22222333556888899888
Q ss_pred HHHHHhcc
Q 001064 228 YTRILENP 235 (1167)
Q Consensus 228 y~r~l~~p 235 (1167)
|++++...
T Consensus 167 ~~~~~~~~ 174 (275)
T 1xnf_A 167 LKQHFEKS 174 (275)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88877653
No 69
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.64 E-value=4.5e-16 Score=161.84 Aligned_cols=120 Identities=16% Similarity=0.233 Sum_probs=97.2
Q ss_pred cchhHhHHHHHHHHhhhcCcccccccccCCceEEEEcCCcc---------------c-----------------------
Q 001064 718 PAQVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRVDGDST---------------E----------------------- 759 (1167)
Q Consensus 718 ~~~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~g~~~---------------~----------------------- 759 (1167)
..+|+..||++||+++|++|..|..||+++|.|+ +.++.. .
T Consensus 13 ~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS-~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~ 91 (219)
T 1q40_B 13 SRNLATNFIANYLKLWDANRSELMILYQNESQFS-MQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMA 91 (219)
T ss_dssp CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEE-EEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHhhccccEEE-EEecCCCCccccccccccccccchhhhhhhccchhcccchhhhhh
Confidence 3569999999999999999999999999987665 454211 0
Q ss_pred -chhchHHHHHHHhcCCCcceeE------eeeeccccC-CCceEEEEEEEEEecCc------------------------
Q 001064 760 -SASSMLDIHSLVISLNFTAIEI------KTINSLGSW-NGGVLVMVSGSVKTKEF------------------------ 807 (1167)
Q Consensus 760 -~~~~~~~i~~~~~~l~~~~~~i------~~~d~q~~~-~~~i~v~v~G~~~~~~~------------------------ 807 (1167)
-..|.++|.++|.+||.+++.| .+||||+.+ .+||+|+|+|.++..+.
T Consensus 92 ~l~~G~~~I~~~l~~LPkT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (219)
T 1q40_B 92 KLSIGQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGP 171 (219)
T ss_dssp TCEEHHHHHHHHHHTSCEEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSSSSS
T ss_pred hhccCHHHHHHHHHHCCCeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCcccccccccccccccccccccccc
Confidence 3457889999999999888888 599999432 47899999999976432
Q ss_pred ------cccceeEEEEEEeee-CCeEEEEcceEEeccC
Q 001064 808 ------CRRRKFVQTFFLAPQ-EKGYFVLNDIFHFLDE 838 (1167)
Q Consensus 808 ------~~~~~F~q~F~L~~~-~~~y~v~nd~fr~~~~ 838 (1167)
...+.|+|||+|.|. +++|+|.||+|++-..
T Consensus 172 ~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~ 209 (219)
T 1q40_B 172 KHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPY 209 (219)
T ss_dssp CCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEEC
T ss_pred ccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecC
Confidence 268999999999999 5799999999998764
No 70
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.64 E-value=3.8e-14 Score=150.58 Aligned_cols=205 Identities=12% Similarity=0.048 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001064 316 AVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 395 (1167)
Q Consensus 316 ~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya 395 (1167)
..+...|...+++++|+..|+++++ +++.....|..++..+...|++++|+.+|++++..+|.+..+|..++
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALK--------SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH--------hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3445678889999999999999998 67777889999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCHHHHHHHHHHHHH--hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC
Q 001064 396 LCMEAS-GSMDLAHNALARATH--VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG 472 (1167)
Q Consensus 396 ~~l~~~-g~~e~A~~vl~rA~~--~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g 472 (1167)
.++... |++++|..+|++++. .. +....+|+.++.++...|++++|+..|+++ ++..|++..+|..++.++.+.|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTY-PTPYIANLNKGICSAKQGQFGLAEAYLKRS-LAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTC-SCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHcC
Confidence 999999 999999999999998 33 455789999999999999999999999998 7889999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhh-CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHH
Q 001064 473 NLEDAFSLYEQAIAIEK-GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE 537 (1167)
Q Consensus 473 ~~e~A~~~~~kAl~~~~-~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~ 537 (1167)
++++|+.+|++++...| .. +..+...+.++.. .|+.++|..+++.+++..|++..++.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQ------ADDLLLGWKIAKA-LGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999986 32 4556555555444 99999999999999999999987664
No 71
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=8.1e-15 Score=175.30 Aligned_cols=214 Identities=14% Similarity=0.125 Sum_probs=163.6
Q ss_pred HHHHHHH---HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCHHHHH
Q 001064 320 EMYKKAK---EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERD----GDFNKVVKLYERCLIACANYPEYWI 392 (1167)
Q Consensus 320 ~~y~~~~---~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~----g~~~~a~~~yeral~~~p~~~~~w~ 392 (1167)
.+|...+ ++.+++..|++++. .++.....|..++.++... +++++|+.+|+++. +.++..++
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~--------~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~ 252 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVS--------RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWV 252 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH--------TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence 3455555 88889999999998 5666677778888887654 79999999999998 88999999
Q ss_pred HHHHH-H--HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 393 RYVLC-M--EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG-----DIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 393 ~ya~~-l--~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g-----~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
.++.+ + ...+++++|+..|+++++ ..++..++.++.++. .| ++++|+..|+++ . +++..+++.+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A-a---~g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRA---ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA-V---GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT-T---TTCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH-h---CCCHHHHHHH
Confidence 99997 4 457899999999999996 458899999999987 55 999999999998 3 8999999999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhhcCCCHHHHH
Q 001064 465 ANMERR----LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL---VSRNAEKARQILVDSLDHVQLSKPLLE 537 (1167)
Q Consensus 465 a~~e~r----~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~---~~g~~~~Ar~i~~kal~~~p~~~~l~~ 537 (1167)
+.++.. ..++++|+..|++|.+... +.....++.++.. +..|+++|...|++|.+.-... -..
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~ 394 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ--------NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--AND 394 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC--------TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHH
Confidence 988766 3499999999999998642 3366677776442 2348999999999999865433 233
Q ss_pred HHHHhHhhCCChhHHHHHHHHHHHHh
Q 001064 538 ALIHFESIQSSPKQIDFLEQLVDKFL 563 (1167)
Q Consensus 538 ~~~~~e~~~~~~~~~~~ar~l~eral 563 (1167)
.+..+...+ ++.++..++.+.++..
T Consensus 395 ~l~~l~~~~-~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 395 LATQLEAPL-TPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 333343333 3444555555555443
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=7.5e-15 Score=176.72 Aligned_cols=206 Identities=12% Similarity=0.023 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDF-NKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 404 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~-~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~ 404 (1167)
+++++++..+++.+. .++.....|..++..+...|++ ++|+.+|++++..+|.+.++|+.++.++...|++
T Consensus 82 ~~~~~al~~l~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 82 EEMEKTLQQMEEVLG--------SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHHT--------TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhc--------cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 445666777777766 5667788999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc----
Q 001064 405 DLAHNALARATHVFVKRLPEIHLFAARFKEQN---------GDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---- 471 (1167)
Q Consensus 405 e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~---------g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---- 471 (1167)
++|+..|++++++. |+ ..+|..++.++... |++++|+..|+++ ++++|++..+|..++.++..+
T Consensus 154 ~~A~~~~~~al~~~-p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 154 TSAHTCFSGALTHC-KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA-VQMDVLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHTTC-CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhC-CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999987 66 69999999999999 9999999999998 789999999999999999999
Q ss_pred ----CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhC
Q 001064 472 ----GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQ 546 (1167)
Q Consensus 472 ----g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~ 546 (1167)
|++++|+.+|++++.+.|. ....+.+|..++.++.. .|++++|+..|++++++.|++...|..+..+....
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKY-EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999862 01347899999999877 99999999999999999999998887776665543
No 73
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=139.49 Aligned_cols=84 Identities=19% Similarity=0.408 Sum_probs=77.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+.++..|+|+.|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVM-IYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEE-CCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35699999999999999999999999999999875 56777899999999999999999999998999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87644
No 74
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.62 E-value=1.9e-13 Score=173.23 Aligned_cols=367 Identities=11% Similarity=0.083 Sum_probs=211.7
Q ss_pred ccccCCCCchHHHHHHHHHHhCCC----CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 001064 72 ELVDGSAMSGEEDRLWNIVKANSS----DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG 147 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~nP~----d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~ 147 (1167)
.++.+|.+.++++.|++++. +|. +.+.-..|++..-+. ++.+...+.+++= +.. ....|.++...|
T Consensus 994 af~~aglp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd-----~~d-~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 994 AFMTADLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLD-----NYD-APDIANIAISNE 1063 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhh-----hcc-HHHHHHHHHhCC
Confidence 33344777777777777773 333 223323344444332 2333332222221 111 334667777777
Q ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHH
Q 001064 148 SMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMI 227 (1167)
Q Consensus 148 ~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~i 227 (1167)
.+++|..+|+++-. +...+..+++..+++++|.++++|+- ...+|..|++..+..|++++|+..
T Consensus 1064 lyEEAf~IYkKa~~--------~~~A~~VLie~i~nldrAiE~Aervn--------~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV--------NTSAVQVLIEHIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CHHHHHHHHHHcCC--------HHHHHHHHHHHHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777777631 11112222223456666666666542 356777777777777777777777
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcch
Q 001064 228 YTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTE 307 (1167)
Q Consensus 228 y~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~ 307 (1167)
|.++ .+.+.+++....+..... .+++.. ++....+... + ...+
T Consensus 1128 YiKA-----dD~say~eVa~~~~~lGk------yEEAIe----yL~mArk~~~-------e---------------~~Id 1170 (1630)
T 1xi4_A 1128 YIKA-----DDPSSYMEVVQAANTSGN------WEELVK----YLQMARKKAR-------E---------------SYVE 1170 (1630)
T ss_pred HHhc-----CChHHHHHHHHHHHHcCC------HHHHHH----HHHHHHhhcc-------c---------------cccc
Confidence 7665 334444443333322221 122211 0100000000 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 001064 308 AEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY 387 (1167)
Q Consensus 308 ~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~ 387 (1167)
.+ ....|.+.++++. ++..|+ ..+...|...++.++..|+++.|..+|.+|
T Consensus 1171 t~--------LafaYAKl~rlee----le~fI~----------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1171 TE--------LIFALAKTNRLAE----LEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred HH--------HHHHHHhhcCHHH----HHHHHh----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 00 1123333444332 333332 112456778888888889999999999886
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
..|.+++..+.+.|++++|.+++++| ++...|..........|++..|+.+...+ ..+|+. +...+.+
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~de---Leeli~y 1289 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADE---LEELINY 1289 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHH---HHHHHHH
Confidence 47888888888888899998888887 34578888888787888888888876642 234443 3466777
Q ss_pred HHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhhcC-----CCHHHHHHHHH
Q 001064 468 ERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL-VSRNAEKARQILVDSLDHVQ-----LSKPLLEALIH 541 (1167)
Q Consensus 468 e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~-~~g~~~~Ar~i~~kal~~~p-----~~~~l~~~~~~ 541 (1167)
+.+.|.+++|+.+|+++|.+++. +..+|-.++.++.+ .-+++.++.++|...+...+ .+..+|..++.
T Consensus 1290 Ye~~G~feEAI~LlE~aL~Lera------H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1290 YQDRGYFEELITMLEAALGLERA------HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHcCCHHHHHHHHHHHhccChh------HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHH
Confidence 78889999999999999888742 23344333333222 15577888888888887766 66788887777
Q ss_pred hHhhCCC
Q 001064 542 FESIQSS 548 (1167)
Q Consensus 542 ~e~~~~~ 548 (1167)
+-...++
T Consensus 1364 LY~~~~e 1370 (1630)
T 1xi4_A 1364 LYDKYEE 1370 (1630)
T ss_pred HHHhccc
Confidence 7666555
No 75
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.62 E-value=5.7e-16 Score=140.76 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=74.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCC-CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~g~~l~V~~~ 1108 (1167)
++|||+|||+++|+++|+++|++|| .|++|+| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i-~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRL-MRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCS-SSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEE-EecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 6899999999999999999999999 8999875 67888999999999999999999999986 467899999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
++++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 76
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6e-15 Score=140.90 Aligned_cols=85 Identities=20% Similarity=0.352 Sum_probs=75.8
Q ss_pred CCCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEE
Q 001064 1027 DEGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1106 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~ 1106 (1167)
.+.+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+++++|||||+|.+.++|.+||...+..|+|+.|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV-ITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-SCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 3456799999999999999999999999999999875 567778999999999999999999999884339999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
++++..
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997653
No 77
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=1.1e-12 Score=166.38 Aligned_cols=399 Identities=9% Similarity=-0.041 Sum_probs=257.6
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL----CYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSV 167 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~----~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~ 167 (1167)
.+|+.+ ...++.+.. .|...++..+||+++ ..|. +..+-..++...++. +..+..+...+.=.. +
T Consensus 983 ~~PeeV---s~~vKaf~~--aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d-- 1051 (1630)
T 1xi4_A 983 QDPEEV---SVTVKAFMT--ADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D-- 1051 (1630)
T ss_pred cCHHHh---HHHHHHHHh--CCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c--
Confidence 445544 345555554 489999999999999 4444 444444466666665 445555555443321 1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 001064 168 DIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFK 247 (1167)
Q Consensus 168 ~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~ 247 (1167)
.-..+..+. ..|.+++|..+|+++-. . ......| ....++|++|..+++|+ .....|++..+
T Consensus 1052 --~~eIA~Iai-~lglyEEAf~IYkKa~~----~---~~A~~VL---ie~i~nldrAiE~Aerv-----n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1052 --APDIANIAI-SNELFEEAFAIFRKFDV----N---TSAVQVL---IEHIGNLDRAYEFAERC-----NEPAVWSQLAK 1113 (1630)
T ss_pred --HHHHHHHHH-hCCCHHHHHHHHHHcCC----H---HHHHHHH---HHHHhhHHHHHHHHHhc-----CCHHHHHHHHH
Confidence 222445555 67999999999999742 1 1222223 33678899999999987 33344554444
Q ss_pred HHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHH
Q 001064 248 EFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKE 327 (1167)
Q Consensus 248 ~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~ 327 (1167)
.+..... .++++. .|... .+.+. |+. ....+.+.++
T Consensus 1114 Aql~~G~------~kEAId----sYiKA------------------------------dD~sa---y~e-Va~~~~~lGk 1149 (1630)
T 1xi4_A 1114 AQLQKGM------VKEAID----SYIKA------------------------------DDPSS---YME-VVQAANTSGN 1149 (1630)
T ss_pred HHHhCCC------HHHHHH----HHHhc------------------------------CChHH---HHH-HHHHHHHcCC
Confidence 4433221 222221 11110 11112 222 2456788899
Q ss_pred HHHHHHHHHhhhcCCCcccCCCChh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 001064 328 FDSKIIGFETAIRRPYFHVKPLSVT-ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL 406 (1167)
Q Consensus 328 ~~~a~~~~e~al~r~~~~v~pld~~-~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~ 406 (1167)
+++++..|..+++ .++. .++.+ ++..+.+.++++. +..| +. ..+..-|...|..++..|++++
T Consensus 1150 yEEAIeyL~mArk--------~~~e~~Idt~--LafaYAKl~rlee-le~f---I~--~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1150 WEELVKYLQMARK--------KARESYVETE--LIFALAKTNRLAE-LEEF---IN--GPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred HHHHHHHHHHHHh--------hcccccccHH--HHHHHHhhcCHHH-HHHH---Hh--CCCHHHHHHHHHHHHhcCCHHH
Confidence 9999999998886 2221 23333 4555556666663 3333 32 2344667789999999999999
Q ss_pred HHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 407 AHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIA 486 (1167)
Q Consensus 407 A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~ 486 (1167)
|...|.+| ..|..++..+.+.|++++|.++++++ ++..+|..........|++..|+.+... +.
T Consensus 1214 A~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii 1277 (1630)
T 1xi4_A 1214 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV 1277 (1630)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh
Confidence 99999886 36788899999999999999999987 3568899888888888999999888764 43
Q ss_pred hhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcC
Q 001064 487 IEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSN 566 (1167)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~ 566 (1167)
.. +..+..++.++.. .|.+++|..+|+++|.+++.+..+|..+..+..... ++++-...++|...+..
T Consensus 1278 v~---------~deLeeli~yYe~-~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~-peklmEhlk~f~~rini- 1345 (1630)
T 1xi4_A 1278 VH---------ADELEELINYYQD-RGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNI- 1345 (1630)
T ss_pred cC---------HHHHHHHHHHHHH-cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC-HHHHHHHHHHHHHhccc-
Confidence 33 4455567777555 999999999999999999988889987777776653 44443333344433332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHH-HHHHHHHhhhC
Q 001064 567 SDSPSTANAAEREELSCVFLEFLGLFGDAQLIK-KAEDRHARLFL 610 (1167)
Q Consensus 567 ~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~-~v~~r~~~~~~ 610 (1167)
+-+++.-....+|..+.....++|+.+.+. .|-++....|.
T Consensus 1346 ---~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~ 1387 (1630)
T 1xi4_A 1346 ---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 1387 (1630)
T ss_pred ---chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhh
Confidence 112344455678999999999999877555 33333344443
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=3.5e-14 Score=170.89 Aligned_cols=224 Identities=9% Similarity=0.001 Sum_probs=170.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM-DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLF 191 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~-e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~f 191 (1167)
+.++++...+++.+...|.+..+|..++..+...+++ ++|++.|+++|+..|.+.++|..++..+. ..|++++|+..|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 4577888899999999999999999999999999999 99999999999999999999999999999 689999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHH
Q 001064 192 ERGLAYVGTDYLSFPLWDKYIEYEYMQ---------QEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAE 262 (1167)
Q Consensus 192 eral~~~g~d~~s~~lw~~y~~~e~~~---------~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e 262 (1167)
++++...|. ...|..++..+... +++++|...|++++++.+.+...++.....
T Consensus 161 ~~al~~~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-------------- 222 (474)
T 4abn_A 161 SGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA-------------- 222 (474)
T ss_dssp HHHHTTCCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH--------------
T ss_pred HHHHhhCCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------------
Confidence 999995543 58899999999988 999999999999999877766555422211
Q ss_pred HHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001064 263 EVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRP 342 (1167)
Q Consensus 263 e~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~ 342 (1167)
|... .|...
T Consensus 223 -----------------------------------------------------------~~~~--------~~~~~---- 231 (474)
T 4abn_A 223 -----------------------------------------------------------YLSL--------YFNTG---- 231 (474)
T ss_dssp -----------------------------------------------------------HHHH--------HHHTT----
T ss_pred -----------------------------------------------------------HHHH--------HHhhc----
Confidence 1111 01000
Q ss_pred CcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 343 YFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA---NYPEYWIRYVLCMEASGSMDLAHNALARATHVFV 419 (1167)
Q Consensus 343 ~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p---~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~ 419 (1167)
...|++++|+..|++++..+| .++.+|+.++.++...|++++|+..|++++++.
T Consensus 232 ----------------------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 288 (474)
T 4abn_A 232 ----------------------QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD- 288 (474)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ----------------------cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 011345566666666666666 666666666666666666667777776666665
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 420 KRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 420 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
|+++.+|..++.++...|++++|...+.++
T Consensus 289 p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 289 PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566666666666666666666666666553
No 79
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=137.32 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=76.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceee-eEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPD-GVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++++|||+|||.++++++|+++|++||.|..+ .| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKI-MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEE-CCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE-EEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 46999999999999999999999999999998 75 56778899999999999999999999995 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987643
No 80
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.1e-15 Score=137.68 Aligned_cols=83 Identities=18% Similarity=0.182 Sum_probs=76.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHY-PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-EecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5699999999999999999999999999999875 55677899999999999999999999965 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 88654
No 81
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=4.6e-14 Score=146.02 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVL 396 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~ 396 (1167)
.++.+|...+++++|+..|+++|+ ++|.+...|..++..+...|++++++..+++++...+.+..+|..++.
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLK--------ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 346789999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 001064 397 CMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLED 476 (1167)
Q Consensus 397 ~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~ 476 (1167)
++...++++.|...+.+++.+. |++..+|..++.++...|++++|+..|+++ ++++|++..+|+.++.++.++|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKT-ISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHH-HHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999987 889999999999999999999999999998 78999999999999999999999999
Q ss_pred HHHHHHHHHHhhhC
Q 001064 477 AFSLYEQAIAIEKG 490 (1167)
Q Consensus 477 A~~~~~kAl~~~~~ 490 (1167)
|+..|++||+.+|+
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999999863
No 82
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.60 E-value=2.9e-15 Score=141.07 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=75.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||+++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|++||+. ||..|+|+.|+|+++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i-~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEI-LLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEE-EECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4689999999999999999999999999999986 66888999999999999999999999986 999999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+..
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 83
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=3e-15 Score=175.72 Aligned_cols=84 Identities=24% Similarity=0.398 Sum_probs=76.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||+.+|+++|+++|++||.|+.|.| +.++.+|+++|||||+|.+.++|.+||.. ||+.|+|+.|.|+++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHM-VYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEe-eccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4689999999999999999999999999999876 56777899999999999999999999976 899999999999999
Q ss_pred cCCCCC
Q 001064 1109 RPNTGS 1114 (1167)
Q Consensus 1109 r~~~~~ 1114 (1167)
+++...
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 876543
No 84
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.4e-15 Score=136.34 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=76.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++++++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVL-MKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-ECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-eecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4599999999999999999999999999999875 56777899999999999999999999985 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87643
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=142.95 Aligned_cols=84 Identities=18% Similarity=0.346 Sum_probs=77.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVV-MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEE-ECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 35699999999999999999999999999999875 56778899999999999999999999998999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87643
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.59 E-value=1.8e-14 Score=180.53 Aligned_cols=174 Identities=15% Similarity=0.256 Sum_probs=160.9
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
..|++.+.|..++..+.+.|++++|+..|+++|..+|.+.++|..++.++...|++++|+..|++|+++. |++..+|+.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4577889999999999999999999999999999999999999999999999999999999999999988 899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFL 508 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~ 508 (1167)
++.++...|++++|+..|+++ ++++|++..+|..++.++..+|++++|+..|++||++.|+ .+.++..++.++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kA-l~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~------~~~a~~~L~~~l 155 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRA-IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD------FPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHhhhhhHH
Confidence 999999999999999999998 7899999999999999999999999999999999999864 377899999987
Q ss_pred HHHhCCHHHHHHHHHHHHhhcCC
Q 001064 509 HLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 509 ~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
.. .|++++|.+.|++++++.|+
T Consensus 156 ~~-~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 156 QI-VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HH-TTCCTTHHHHHHHHHHHHHH
T ss_pred Hh-cccHHHHHHHHHHHHHhChh
Confidence 76 99999999999999987654
No 87
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=9.7e-15 Score=139.22 Aligned_cols=84 Identities=19% Similarity=0.434 Sum_probs=76.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKV-FIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEE-EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999876 56777899999999999999999999966 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987644
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.59 E-value=8.9e-14 Score=149.33 Aligned_cols=180 Identities=11% Similarity=0.015 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACA-NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p-~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
...|...+..+...|++++|+..|++++..+| .+..+|+.++.++...|++++|+..|++++... |++..+|+.++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 37899999999999999999999999999998 899999999999999999999999999999987 8899999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc--hHHHHHH
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLL-------EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT--LPMLYAQ 503 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~-------~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~--~~~l~~~ 503 (1167)
+...|++++|+..|+++ ++++|++. .+|+..+.++...|++++|+.+|+++++..| . .+.+|..
T Consensus 86 ~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~~ 158 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEG-IKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS------KKWKTDALYS 158 (228)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC------HHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHH-HHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC------CcccHHHHHH
Confidence 99999999999999998 78899988 6699999999999999999999999999874 3 4667888
Q ss_pred HHHHHHHHhCCH---------------------------HHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 504 YSRFLHLVSRNA---------------------------EKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 504 ~a~~~~~~~g~~---------------------------~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
++.+++. .|+. ++|+..|++++++.|++..++..+..+
T Consensus 159 l~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYN-NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHH-HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8877654 5544 666666666666666666655544443
No 89
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=7.9e-15 Score=139.78 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=73.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.| +.++ +|+++|||||+|.+.++|.+||+. +|..|+|+.|+|+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLL-IKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEE-ECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 5699999999999999999999999999999875 4455 899999999999999999999986 899999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+++.
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8653
No 90
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=8e-15 Score=136.80 Aligned_cols=83 Identities=19% Similarity=0.351 Sum_probs=75.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||.++++++|+++|++|| |.+|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRL-VRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEE-eecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 3569999999999999999999999997 999875 56778899999999999999999999966999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87543
No 91
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.5e-15 Score=137.17 Aligned_cols=84 Identities=23% Similarity=0.297 Sum_probs=76.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM-PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35699999999999999999999999999999875 56777899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987644
No 92
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.1e-15 Score=137.15 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=77.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYL-AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-eecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 346799999999999999999999999999999875 56777899999999999999999999985 8999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987644
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=3.5e-15 Score=144.82 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=76.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||.++|+++|+++|++||.|.+|.| +.++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL-NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35799999999999999999999999999999875 55777899999999999999999999975 99999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 987644
No 94
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=9.6e-14 Score=162.97 Aligned_cols=283 Identities=12% Similarity=0.014 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhh-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------cCCCHH
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE-LENWHNYLDFIERDGDFNKVVKLYERCLIA------CANYPE 389 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~-~~~W~~y~~~~e~~g~~~~a~~~yeral~~------~p~~~~ 389 (1167)
.....+...+++++|+..|+++++. .|.++.. ...|..++..+...|++++|+.+|++++.. .+....
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 4566788899999999999999982 2333322 257888899999999999999999999987 466667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----hccChHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVF-----VKRLPEIHLFAARFKEQNGD-----------------IDGARAAYQ 447 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~-----~p~~~~l~~~~a~~~e~~g~-----------------~~~A~~~~~ 447 (1167)
+|..++.++...|++++|...|++++.+. .+....++..++.++...|+ +++|+..|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999985 24556788899999999999 999999999
Q ss_pred HHhhhc------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHH
Q 001064 448 LVHTET------SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQI 521 (1167)
Q Consensus 448 ~a~~~~------~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i 521 (1167)
++ +++ .+....+|..++.++...|++++|+.+|++++...+..........++..++.++.. .|++++|+.+
T Consensus 208 ~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~ 285 (411)
T 4a1s_A 208 EN-LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF-LGQFEDAAEH 285 (411)
T ss_dssp HH-HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT-TTCHHHHHHH
T ss_pred HH-HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-CcCHHHHHHH
Confidence 87 333 233456789999999999999999999999999886432222223467788888766 9999999999
Q ss_pred HHHHHhhcCCC------HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCH
Q 001064 522 LVDSLDHVQLS------KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDA 595 (1167)
Q Consensus 522 ~~kal~~~p~~------~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~ 595 (1167)
|+++++..+.. ..++..++.+....++ .+.+..+|++++....... .......++..........|+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~ 359 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQELG---DRIGEARACWSLGNAHSAIGGH 359 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHHHHHhccH
Confidence 99999987643 4556667777766666 5667888888876533221 1234456777888888899999
Q ss_pred HHHHHHHHHHHhhhCCC
Q 001064 596 QLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 596 ~~~~~v~~r~~~~~~~~ 612 (1167)
+.+.+.+++..+++...
T Consensus 360 ~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 360 ERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998753
No 95
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.2e-15 Score=139.29 Aligned_cols=85 Identities=19% Similarity=0.349 Sum_probs=77.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVI-MKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEE-EECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 446799999999999999999999999999999876 6677889999999999999999999998899999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 887643
No 96
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=4.2e-13 Score=147.64 Aligned_cols=227 Identities=10% Similarity=-0.009 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCC-ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPL-SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGS 403 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pl-d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~ 403 (1167)
.+++++|+..|+++++. .+. ++.....|..++..+...|++++|+..|++++...|.+..+|..++.++...|+
T Consensus 18 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 18 TLQQEVILARMEQILAS-----RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CHHHHHHHHHHHHHHTS-----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHhc-----ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 46778888899999873 112 356788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 404 MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 483 (1167)
Q Consensus 404 ~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~k 483 (1167)
+++|+..|++++.+. |.+..+|+.++.++...|++++|+.+|+++ +++.|++...+.... +....|++++|+.+|++
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAF-YQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHH
Confidence 999999999999987 788999999999999999999999999998 788999886555444 44667999999999999
Q ss_pred HHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC----HHHHHHHHHhHhhCCChhHHHHHHHHH
Q 001064 484 AIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS----KPLLEALIHFESIQSSPKQIDFLEQLV 559 (1167)
Q Consensus 484 Al~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~----~~l~~~~~~~e~~~~~~~~~~~ar~l~ 559 (1167)
++...+.. ...+ .++.+... .++.++|...++++++..|.. ..+|..++.+....++ .+.+..+|
T Consensus 170 ~~~~~~~~------~~~~-~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~ 238 (275)
T 1xnf_A 170 HFEKSDKE------QWGW-NIVEFYLG-NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALF 238 (275)
T ss_dssp HHHHSCCC------STHH-HHHHHHTT-SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHhcCCcc------hHHH-HHHHHHHH-hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 99987643 1133 24444444 778899999999999877643 5677777777777766 66789999
Q ss_pred HHHhhcCCCCC
Q 001064 560 DKFLMSNSDSP 570 (1167)
Q Consensus 560 eral~~~~~~~ 570 (1167)
++++...|++.
T Consensus 239 ~~al~~~p~~~ 249 (275)
T 1xnf_A 239 KLAVANNVHNF 249 (275)
T ss_dssp HHHHTTCCTTC
T ss_pred HHHHhCCchhH
Confidence 99999876554
No 97
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.58 E-value=2.6e-14 Score=136.25 Aligned_cols=85 Identities=28% Similarity=0.363 Sum_probs=77.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV-VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346799999999999999999999999999999876 56777899999999999999999999986 8999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9987654
No 98
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8e-15 Score=136.56 Aligned_cols=83 Identities=24% Similarity=0.316 Sum_probs=76.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEEC-CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 5799999999999999999999999999999875 56777899999999999999999999976 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87644
No 99
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=136.04 Aligned_cols=83 Identities=19% Similarity=0.325 Sum_probs=74.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCC-cccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD-VVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++|| |.+|.| ++++.+ |+++|||||+|.+.++|.+||..++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i-~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEEC-CBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEE-ecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 3569999999999999999999999999 999875 556666 8999999999999999999995589999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987543
No 100
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=9.7e-13 Score=157.20 Aligned_cols=349 Identities=10% Similarity=-0.012 Sum_probs=220.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 102 ALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSM---DKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 102 ~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~---e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
.|+..+.+ .+++++|.++|+++++. .+..+++.++.++...|+. ++|+..|++++.. +++.++.++.++.
T Consensus 8 ~la~~~~~--~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALK--RGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHH
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 45665554 47999999999999876 4667888899998888887 8999999999976 6677888888554
Q ss_pred hhc----CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHH---HHHHHHHHhcchhhHHHHHHHHHHHHh
Q 001064 179 NTY----GDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRV---AMIYTRILENPIQQLDRYFSSFKEFAA 251 (1167)
Q Consensus 179 ~~~----~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A---~~iy~r~l~~p~~~~~~~~~~~~~~~~ 251 (1167)
... +++++|...|++++... +. ..+..++.+....+....+ ...|.++... .+....+..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g--~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~L------ 147 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG--EG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQ------ 147 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT--CS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHH------
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC--CH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHH------
Confidence 222 36789999999999832 21 2344444444443332222 2222222111 011111111
Q ss_pred cCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHH----H
Q 001064 252 SRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAK----E 327 (1167)
Q Consensus 252 ~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~----~ 327 (1167)
..+|...+ .
T Consensus 148 -------------------------------------------------------------------g~~y~~~~~~~~~ 160 (452)
T 3e4b_A 148 -------------------------------------------------------------------VLLYRTQGTYDQH 160 (452)
T ss_dssp -------------------------------------------------------------------HHHHHHHTCGGGG
T ss_pred -------------------------------------------------------------------HHHHHcCCCcccC
Confidence 11222222 1
Q ss_pred HHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---
Q 001064 328 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG---DFNKVVKLYERCLIACANYPEYWIRYVLCMEAS--- 401 (1167)
Q Consensus 328 ~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g---~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~--- 401 (1167)
...+...++.+.. .++ ..+..++.++...| ++++|+.+|++++...+.....|+.++.++...
T Consensus 161 ~~~a~~~~~~a~~--------~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 161 LDDVERICKAALN--------TTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp HHHHHHHHHHHTT--------TCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGS
T ss_pred HHHHHHHHHHHHc--------CCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 1222333444443 333 37888888888888 899999999999999999999999999988654
Q ss_pred -CCHHHHHHHHHHHHHhhhccChHHHHHHHHH-H--HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-----
Q 001064 402 -GSMDLAHNALARATHVFVKRLPEIHLFAARF-K--EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG----- 472 (1167)
Q Consensus 402 -g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~-~--e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g----- 472 (1167)
++.++|+..|+++. +.++..++.++.+ + ...+++++|+..|+++ . ..++..+++.++.++. .|
T Consensus 230 ~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A-a--~~g~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNG-R--AADQPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH-H--HTTCHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-H--HCCCHHHHHHHHHHHH-cCCCCCC
Confidence 68999999999987 6789999999987 4 4589999999999998 3 4568889999998887 56
Q ss_pred CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCCh
Q 001064 473 NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSP 549 (1167)
Q Consensus 473 ~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~ 549 (1167)
++++|+..|++|+ ++. +..+..++.++..- ..++++|+.+|+++.+.......+....+.. ...+.+
T Consensus 302 d~~~A~~~~~~Aa---~g~------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~ 371 (452)
T 3e4b_A 302 DAKAAEAHFEKAV---GRE------VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS-QGKGTK 371 (452)
T ss_dssp CHHHHHHHHHTTT---TTC------HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH-SCTTBC
T ss_pred CHHHHHHHHHHHh---CCC------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH-hCCCCC
Confidence 9999999999999 321 66778888774321 2299999999999998654444444333322 333444
Q ss_pred hHHHHHHHHHHHHhhcC
Q 001064 550 KQIDFLEQLVDKFLMSN 566 (1167)
Q Consensus 550 ~~~~~ar~l~eral~~~ 566 (1167)
.+.+.+..+|.++....
T Consensus 372 ~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 45677888999988754
No 101
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.7e-15 Score=136.93 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=76.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYI-PREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEC-CBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35699999999999999999999999999999875 56777899999999999999999999985 99999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++.+
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987543
No 102
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=4.2e-15 Score=135.60 Aligned_cols=80 Identities=10% Similarity=0.313 Sum_probs=71.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCC--ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCC----eeeCcE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGR--IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPI----QLAGRQ 1102 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~----~i~g~~ 1102 (1167)
.-.+|||+|||+++|+++|+++|++||. |.+|++ ++|+.+|++||||||+|.+.++|.+||+. +|. .|+||.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i-~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRL-IKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEEC-CCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEE-EecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 4589999999999999999999999996 566654 67888999999999999999999999987 554 699999
Q ss_pred eEEEeccC
Q 001064 1103 VYIEERRP 1110 (1167)
Q Consensus 1103 l~V~~~r~ 1110 (1167)
|+|++++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 103
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1e-14 Score=135.78 Aligned_cols=83 Identities=23% Similarity=0.442 Sum_probs=75.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++++++|+++|++||.|..|.| ++++.+++++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV-VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEE-CCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5699999999999999999999999999999875 56777889999999999999999999966 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87643
No 104
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=1.5e-12 Score=143.82 Aligned_cols=128 Identities=5% Similarity=-0.036 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhccCCCHH
Q 001064 93 NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR----VGSMDKVVEVYERAVQGVTYSVD 168 (1167)
Q Consensus 93 nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~----~~~~e~A~~l~eraL~~~P~s~~ 168 (1167)
+|.+.++|+.|+..+... +++++|...|+++++ |.+...|..++.++.. .+++++|+..|++++... +..
T Consensus 2 ~~~~~~a~~~lg~~~~~~--~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~ 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKE--KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred CCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH
Confidence 577788888888887763 688888888888888 6777888888888888 888888888888888763 777
Q ss_pred HHHHHHHHHHhh----cCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHH
Q 001064 169 IWLHYCIFAINT----YGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM----QQEWSRVAMIYTRIL 232 (1167)
Q Consensus 169 lw~~ya~~~~~~----~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~----~~~~~~A~~iy~r~l 232 (1167)
.|..++.++. . .+++++|+..|++++.. + ....|..++.+... .+++++|...|++++
T Consensus 76 a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~---~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 76 GCHLLGNLYY-SGQGVSQNTNKALQYYSKACDL---K--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT---T--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHc---C--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 8888877777 5 67778888888877763 1 23444444444444 444444444444443
No 105
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-14 Score=136.81 Aligned_cols=85 Identities=27% Similarity=0.332 Sum_probs=77.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C------CCeeeC
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S------PIQLAG 1100 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~------~~~i~g 1100 (1167)
..+.++|||+|||+++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. + +..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRV-VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 346799999999999999999999999999999875 56777899999999999999999999986 7 999999
Q ss_pred cEeEEEeccCCCC
Q 001064 1101 RQVYIEERRPNTG 1113 (1167)
Q Consensus 1101 ~~l~V~~~r~~~~ 1113 (1167)
+.|+|++++++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987643
No 106
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.7e-14 Score=137.15 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=76.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCce--------eeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIK--------PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1098 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i 1098 (1167)
+.+.++|||+|||.++|+++|+++|++||.|. .|.| +.++.+|+++|||||+|.+.++|.+||.. ++..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHI-YLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEEC-CBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEE-EEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 44679999999999999999999999999998 5765 55778899999999999999999999986 99999
Q ss_pred eCcEeEEEeccCCCC
Q 001064 1099 AGRQVYIEERRPNTG 1113 (1167)
Q Consensus 1099 ~g~~l~V~~~r~~~~ 1113 (1167)
+|+.|+|++++++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987643
No 107
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.56 E-value=9.3e-15 Score=131.73 Aligned_cols=80 Identities=16% Similarity=0.329 Sum_probs=73.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.++|||+|||+++++++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|++.++..|+|+.|+|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI-KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-eecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 346799999999999999999999999999999875 5677789999999999999999999998899999999999986
Q ss_pred c
Q 001064 1108 R 1108 (1167)
Q Consensus 1108 ~ 1108 (1167)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.6e-14 Score=133.87 Aligned_cols=81 Identities=27% Similarity=0.431 Sum_probs=71.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++|+++|+++|++||.|..|.|. .+++++|||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK----NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEC----CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE----ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3457999999999999999999999999999997652 2345899999999999999999965 8999999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998753
No 109
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.8e-15 Score=136.61 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=70.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++|+++|+++|++||.| +|.| +.++ +|+++|||||+|.+.++|++||+.++..|+||.|+|..+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHI-EIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEE-EESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEE-EECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 46899999999999999999999999954 7765 4455 8999999999999999999999879999999999999877
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 110
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.55 E-value=1.8e-14 Score=135.21 Aligned_cols=84 Identities=14% Similarity=0.304 Sum_probs=75.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee---eCcEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL---AGRQV 1103 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i---~g~~l 1103 (1167)
+.+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. ++..+ +|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTV-LKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEEC-CCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345799999999999999999999999999999875 56777899999999999999999999986 88887 89999
Q ss_pred EEEeccCCC
Q 001064 1104 YIEERRPNT 1112 (1167)
Q Consensus 1104 ~V~~~r~~~ 1112 (1167)
+|++++++.
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998754
No 111
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=130.58 Aligned_cols=81 Identities=30% Similarity=0.374 Sum_probs=73.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARV-VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4689999999999999999999999999999875 56777899999999999999999999986 899999999999999
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 112
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.8e-14 Score=133.14 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=75.8
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||. +++.|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQV-KKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEE-EECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEE-EecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 345689999999999999999999999999999875 5677789999999999999999999999 57899999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987643
No 113
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=1.1e-14 Score=137.09 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=75.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.++++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEE-EECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 35799999999999999999999999999999875 56777899999999999999999999999889999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87643
No 114
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.5e-14 Score=134.51 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=76.4
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeec-CCCcccccEEEEEECCHHHHHHHHHh--CCCeeeCcEeE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRN-RKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVY 1104 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~g~~l~ 1104 (1167)
+.+.++|||+|||.++++++|+++|++||.|..|.| +++ +.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRL-PKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEE-ecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 346799999999999999999999999999999875 455 67899999999999999999999976 79999999999
Q ss_pred EEeccCCCC
Q 001064 1105 IEERRPNTG 1113 (1167)
Q Consensus 1105 V~~~r~~~~ 1113 (1167)
|++++++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987644
No 115
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=1e-14 Score=141.09 Aligned_cols=83 Identities=25% Similarity=0.398 Sum_probs=75.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||..+|..|+|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITI-LCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEE-EEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 5689999999999999999999999999999875 557778999999999999999999999658999999999999998
Q ss_pred CCCC
Q 001064 1110 PNTG 1113 (1167)
Q Consensus 1110 ~~~~ 1113 (1167)
+..+
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7544
No 116
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=2e-14 Score=128.28 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=74.4
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV-MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 68999999999999999999999999999875 56777899999999999999999999986 99999999999999987
Q ss_pred CC
Q 001064 1111 NT 1112 (1167)
Q Consensus 1111 ~~ 1112 (1167)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 117
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.4e-15 Score=136.41 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=72.6
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+...++|||+|||+++|+++|+++|++||.|.+|.| ++++. |+++|||||+|.+.++|.+||..+++.|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i-~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEE-ECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEE-EECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345799999999999999999999999999999875 44555 8999999999999999999999889999999999987
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
++
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 65
No 118
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.6e-15 Score=141.97 Aligned_cols=82 Identities=20% Similarity=0.395 Sum_probs=75.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
...++|||+|||.++++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRI-ISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-CCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEE-EecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 35799999999999999999999999999999875 56777899999999999999999999965999999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 764
No 119
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=133.51 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=75.0
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++|+++|+++|++||.|.+|.|. .+ +|+++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~-~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVM-ME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEE-EC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3467999999999999999999999999999998763 34 788999999999999999999986 9999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9987654
No 120
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=133.06 Aligned_cols=83 Identities=17% Similarity=0.332 Sum_probs=74.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCC---CcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRK---DVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V 1105 (1167)
+.++|||+|||.++++++|+++|++||.|..|.|. +++. +++++|||||+|.+.++|.+||.. ++..|+|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~-~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTIS-KKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE-EEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-ecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46899999999999999999999999999998764 3443 568999999999999999999996 899999999999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
++++++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987543
No 121
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.55 E-value=8.3e-15 Score=132.67 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=75.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+..+|..|+|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTI-LCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEE-EESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999875 567778999999999999999999999559999999999999998
Q ss_pred CCCC
Q 001064 1110 PNTG 1113 (1167)
Q Consensus 1110 ~~~~ 1113 (1167)
++.+
T Consensus 84 ~~~p 87 (89)
T 3ucg_A 84 TNRP 87 (89)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7543
No 122
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.55 E-value=1.6e-14 Score=129.53 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=73.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|+++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEE-EECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5699999999999999999999999999999875 56777899999999999999999999966 999999999999987
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 123
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.55 E-value=3.5e-14 Score=136.01 Aligned_cols=80 Identities=21% Similarity=0.473 Sum_probs=73.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.+++.+||+. +|..|+|+.|+|++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKV-FIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEE-CCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45799999999999999999999999999999875 56777899999999999999999999986 89999999999998
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
+|
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 124
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=2.6e-12 Score=141.97 Aligned_cols=228 Identities=9% Similarity=0.035 Sum_probs=172.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHhcCCCCCC
Q 001064 129 FPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINT----YGDPETIRRLFERGLAYVGTDYLS 204 (1167)
Q Consensus 129 ~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~----~~~~~~Ar~~feral~~~g~d~~s 204 (1167)
.|.+...|+.++.++...+++++|+..|++++. +.+...|..++.++. . .+++++|...|+++++. + .
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~---~--~ 73 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDL---N--Y 73 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT---T--C
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHC---C--C
Confidence 477889999999999999999999999999998 688899999988888 6 78899999999999873 1 3
Q ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccch
Q 001064 205 FPLWDKYIEYEYM----QQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGA 280 (1167)
Q Consensus 205 ~~lw~~y~~~e~~----~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~ 280 (1167)
...|..++.+... .+++++|...|+++++.
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---------------------------------------------- 107 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---------------------------------------------- 107 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------------------------------
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------------------------------------------
Confidence 4555555555444 44555554444444332
Q ss_pred hhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHH
Q 001064 281 EVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY 360 (1167)
Q Consensus 281 ~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y 360 (1167)
+ ....|..+
T Consensus 108 ---------------------------------------------------------------------~--~~~a~~~l 116 (273)
T 1ouv_A 108 ---------------------------------------------------------------------K--YAEGCASL 116 (273)
T ss_dssp ---------------------------------------------------------------------T--CHHHHHHH
T ss_pred ---------------------------------------------------------------------C--CccHHHHH
Confidence 1 23445555
Q ss_pred HHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 361 LDFIER----DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA----SGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 361 ~~~~e~----~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~----~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
+.++.. .+++++|+.+|++++... +...|+.++.++.. .+++++|+..|+++++. ..+..++.++.+
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~ 191 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHH
Confidence 555555 678888888888888763 67788888888877 78888888888888875 356788888888
Q ss_pred HHH----cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhh
Q 001064 433 KEQ----NGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 433 ~e~----~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~~~~kAl~~~~ 489 (1167)
+.. .+++++|+..|+++ ++..+ ..++..++.++.. .+++++|+.+|++|++..+
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a-~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKA-CELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHH-HHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCCCccHHHHHHHHHHH-HhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888 88888888888887 55544 6777888888887 8888899999999888874
No 125
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=134.65 Aligned_cols=83 Identities=23% Similarity=0.360 Sum_probs=76.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|..|.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQL-MMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEE-EEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35699999999999999999999999999999876 56777899999999999999999999985 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98763
No 126
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-14 Score=131.73 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=75.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|.+|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRL-VTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-EECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999875 4455 899999999999999999999976 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987644
No 127
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.54 E-value=2e-14 Score=132.24 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=74.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||.++++++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKM-MFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 589999999999999999999999999999875 56777899999999999999999999976 9999999999999998
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
+++
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 128
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.4e-14 Score=132.90 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=69.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC-----cEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG-----RQV 1103 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g-----~~l 1103 (1167)
..++|||+|||+++|+++|+++|++||.|..|.| +.+ |||||+|.+.++|++||+. ++..|+| +.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i-~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV-YRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEE-ETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE-ecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 4699999999999999999999999999999875 222 8999999999999999986 8999999 999
Q ss_pred EEEeccCCCCC
Q 001064 1104 YIEERRPNTGS 1114 (1167)
Q Consensus 1104 ~V~~~r~~~~~ 1114 (1167)
+|++++++.+.
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999886543
No 129
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.54 E-value=4.4e-14 Score=132.26 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC---cEeE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG---RQVY 1104 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g---~~l~ 1104 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.| ++++ +|+++|||||+|.+.++|.+||+. ++..+.| +.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV-LRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 35799999999999999999999999999999875 4454 789999999999999999999986 8999988 9999
Q ss_pred EEeccCCCC
Q 001064 1105 IEERRPNTG 1113 (1167)
Q Consensus 1105 V~~~r~~~~ 1113 (1167)
|++++++..
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999987654
No 130
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=145.31 Aligned_cols=80 Identities=18% Similarity=0.183 Sum_probs=73.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCC--CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..++|||+|||+++|+++|+++|++|| .|.+|.| +.++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i-~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKF-AENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 468999999999999999999999999 8999875 66888999999999999999999999988 8999999999999
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
++++
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 8865
No 131
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.53 E-value=5.9e-15 Score=133.91 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=69.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCC--CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFG--RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+|||+|||+++|+++|+++|++|| .|.++++ +.++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|..+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i-~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKF-FENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEE-EECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEE-EecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 5799999999999999999999999 9999875 66788999999999999999999999975 899999999999998
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87543
No 132
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=133.78 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=74.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhc-CCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe-eeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQN-FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ-LAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~-i~g~~l~V~ 1106 (1167)
+.++|||+|||.++|+++|+++|++ ||.|.+|.| ++++ +|+++|||||+|.+.++|.+||+. ++.. |+|+.|+|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKV-VLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEE-EECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEE-EECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 5699999999999999999999999 999999876 4566 899999999999999999999986 8988 999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 987654
No 133
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=130.28 Aligned_cols=80 Identities=25% Similarity=0.363 Sum_probs=73.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|++. ++..|+|+.|+|++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTI-MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEE-CCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 35699999999999999999999999999999875 56777889999999999999999999975 89999999999998
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 134
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=133.87 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=76.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||.++++++|+++|++||.|.+|.+ +.++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL-NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEE-EecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 35799999999999999999999999999999875 56778899999999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 135
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.8e-15 Score=140.44 Aligned_cols=81 Identities=14% Similarity=0.240 Sum_probs=73.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCc-eeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRI-KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||+++|+++|+++|++||.| ..|.| +.++ +|+++|||||+|.+.++|.+||+.++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHV-LVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEE-CCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEE-EECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 356999999999999999999999999999 88765 4566 89999999999999999999999899999999999998
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
No 136
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.53 E-value=6.8e-15 Score=136.29 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=75.2
Q ss_pred CCccEEEEecCCC------CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC-
Q 001064 1029 GEVKSVYVRNLPS------TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG- 1100 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g- 1100 (1167)
..+++|||+|||. ++++++|+++|++||.|.+|.| ++++.||+++|||||+|.+.++|.+||+. +|..|+|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i-~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEF-PIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEE-EEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3568999999999 9999999999999999999875 66788899999999999999999999976 9999999
Q ss_pred cEeEEEeccCC
Q 001064 1101 RQVYIEERRPN 1111 (1167)
Q Consensus 1101 ~~l~V~~~r~~ 1111 (1167)
+.|+|.+++++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998754
No 137
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=3.2e-14 Score=134.39 Aligned_cols=84 Identities=21% Similarity=0.265 Sum_probs=76.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||.++|+++|+++|++||.|.+|.+ +.++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEC-CBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35799999999999999999999999999999875 56777899999999999999999999985 99999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++.+
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987643
No 138
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.5e-14 Score=131.38 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=75.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCce-eeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE----e
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK-PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ----V 1103 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~----l 1103 (1167)
+.++|||+|||.++++++|+++|++||.|. +|.| ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKI-IRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEE-EECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE-eecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 569999999999999999999999999999 9875 56778899999999999999999999996 899999999 9
Q ss_pred EEEeccCCC
Q 001064 1104 YIEERRPNT 1112 (1167)
Q Consensus 1104 ~V~~~r~~~ 1112 (1167)
+|+++++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999988643
No 139
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-14 Score=129.54 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=75.2
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++++++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEE-EECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEE-EEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346799999999999999999999999999999875 56777899999999999999999999986 9999999999999
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 8864
No 140
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.9e-14 Score=130.13 Aligned_cols=81 Identities=20% Similarity=0.186 Sum_probs=74.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++++++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVC-LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCE-EEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEE-EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4689999999999999999999999999998765 56777899999999999999999999966 899999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 141
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=139.80 Aligned_cols=83 Identities=14% Similarity=0.315 Sum_probs=74.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCcee--eeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCC----eeeCc
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPI----QLAGR 1101 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~----~i~g~ 1101 (1167)
...++|||+|||+++|+++|+++|++||.|.. |+| ++++.+|++||||||+|.+. ++.+||.. +|. .|+|+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i-~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRV-IKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEEC-CBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEE-EEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 45689999999999999999999999999976 765 66788999999999999999 99999987 888 99999
Q ss_pred EeEEEeccCCCC
Q 001064 1102 QVYIEERRPNTG 1113 (1167)
Q Consensus 1102 ~l~V~~~r~~~~ 1113 (1167)
.|+|++++++.+
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987543
No 142
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8.3e-14 Score=129.87 Aligned_cols=82 Identities=24% Similarity=0.387 Sum_probs=72.5
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+.+.++|||+|||.++++++|+++|++||.|.+|.| ++++. .++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKM-ITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEE-ECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEE-EecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 446799999999999999999999999999999875 44432 3689999999999999999985 9999999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998754
No 143
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.52 E-value=4.9e-14 Score=130.34 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=72.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCcee--------eeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--------DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1100 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g 1100 (1167)
+.++|||+|||.++++++|+++|++||.|.. +.+ +.++.+|+++|||||+|.+.++|.+|++. +|..|+|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEE-EECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEE-EecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4599999999999999999999999999998 875 56778899999999999999999999985 9999999
Q ss_pred cEeEEEecc
Q 001064 1101 RQVYIEERR 1109 (1167)
Q Consensus 1101 ~~l~V~~~r 1109 (1167)
+.|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999864
No 144
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-13 Score=128.94 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=73.3
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++++++|+++|++||.|.+|.| ++++. .++|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEE-ECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 446799999999999999999999999999999875 33432 3899999999999999999986 9999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9988654
No 145
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=2.2e-13 Score=170.69 Aligned_cols=171 Identities=17% Similarity=0.177 Sum_probs=154.2
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001064 382 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 382 ~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 461 (1167)
..||+++++|..+|.++..+|++++|+..|++|+++. |++..+|..+|.++.+.|++++|+..|+++ ++++|++..+|
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A-l~l~P~~~~a~ 80 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEA-IRISPTFADAY 80 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHH
Confidence 3579999999999999999999999999999999988 899999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001064 462 IKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIH 541 (1167)
Q Consensus 462 ~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~ 541 (1167)
+.++.++..+|++++|+..|++||++.|+ .+.+|..+|.++.. .|++++|...|++||++.|++...|..++.
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~-~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKD-SGNIPEAIASYRTALKLKPDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence 99999999999999999999999999864 37789999999776 999999999999999999999999999888
Q ss_pred hHhhCCChhHHHHHHHHHHHHhh
Q 001064 542 FESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 542 ~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
.....++.++ +...|++++.
T Consensus 154 ~l~~~g~~~~---A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQIVCDWTD---YDERMKKLVS 173 (723)
T ss_dssp HHHHTTCCTT---HHHHHHHHHH
T ss_pred HHHhcccHHH---HHHHHHHHHH
Confidence 8888776433 5566666554
No 146
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.6e-14 Score=131.56 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=69.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~--~~~i~g~~l~V 1105 (1167)
.+.++|||+|||+++|+++|+++|++||.|++|.| ++ .||||||+|++.++|.+||+. + +..|+|+.|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i-~~------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-Ec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 36799999999999999999999999999999875 32 269999999999999999984 4 58999999999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
++++++..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99987644
No 147
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.52 E-value=7.5e-14 Score=130.14 Aligned_cols=75 Identities=31% Similarity=0.501 Sum_probs=68.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|..|.+ .+|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~---------~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK---------LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE---------CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE---------ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 5699999999999999999999999999999764 256999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 87654
No 148
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.6e-13 Score=153.78 Aligned_cols=134 Identities=18% Similarity=0.198 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-------
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIA--------CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV------- 419 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~--------~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~------- 419 (1167)
..|..++.++...|++++|+.+|++++.. .+....+|..++.++...|++++|...|++++.+.+
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555666666677777777777777776 445556778888888888888888888888877542
Q ss_pred -ccChHHHHHH------HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 420 -KRLPEIHLFA------ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 420 -p~~~~l~~~~------a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+....+|... +......+.+.++...+.++ ....|....+|..++.++.++|++++|+.+|++++++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC-KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1222333333 33334455666677777776 566888899999999999999999999999999999874
No 149
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.51 E-value=4.8e-14 Score=134.25 Aligned_cols=79 Identities=23% Similarity=0.427 Sum_probs=70.9
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
..+|||+|||+++|+++|+++|++||.|.+|+| ++++ +.+||||||+|.+.++|++||+. +|..|+|+.|+|++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i-~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV-VCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEE-eecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 368999999999999999999999999999886 4443 45799999999999999999976 9999999999999988
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 150
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.51 E-value=7.3e-13 Score=135.68 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=157.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
....|..++..+...|++++|+..|++++...|.+..+|..++.++...|++++|...+++++... |....+|..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 356788888888899999999999999999999999999999999999999999999999999987 7889999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
+...|++++|+.+|+++ ++..|++..+|..++.++...|++++|+.+|++++...+. .+.++..++.++.. .
T Consensus 86 ~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~-~ 157 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKV-AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN------EGKVHRAIAFSYEQ-M 157 (186)
T ss_dssp HHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH-T
T ss_pred HHHhcCHHHHHHHHHHH-HhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHH-c
Confidence 99999999999999998 7789999999999999999999999999999999998753 26788889988776 9
Q ss_pred CCHHHHHHHHHHHHhhcCCCH
Q 001064 513 RNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
|++++|..+|+++++..|++.
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 158 GRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHcCCCch
Confidence 999999999999999887764
No 151
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=134.94 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=72.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecC-CCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNR-KDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++++++|+++|++|| |.+|.| ++++ .+|+++|||||+|.+.++|.+||..+|..|+|+.|+|+++
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i-~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL-PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEEC-SCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 459999999999999999999999999 999875 4455 5899999999999999999999966999999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+++.
T Consensus 96 ~~~~ 99 (100)
T 2j76_E 96 DQAQ 99 (100)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8753
No 152
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.51 E-value=2e-14 Score=125.53 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=69.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
+|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|++|++.++..|+|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAML-MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECC-CBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999875 55677899999999999999999999998999999999999864
No 153
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.51 E-value=4.8e-13 Score=168.28 Aligned_cols=248 Identities=13% Similarity=0.030 Sum_probs=191.7
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCL--------IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK 420 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral--------~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p 420 (1167)
++|.+...+...+ ...+++++|+..|++++ ..+|.+.++|+..+..+...|++++|+..|+++++.. |
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p 464 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-G 464 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-C
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-c
Confidence 5666665555444 56799999999999999 8889999999999999999999999999999999988 8
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHH
Q 001064 421 RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPML 500 (1167)
Q Consensus 421 ~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l 500 (1167)
++..+|+.++.++...|++++|+..|+++ ++++|++..+|+.++.++.++|++++ +..|++|++.+|.. +.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~------~~a 536 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEV-LDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV------ISA 536 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC------HHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch------HHH
Confidence 99999999999999999999999999998 78999999999999999999999999 99999999998643 678
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhH--HHHHHHHHHHHhhcCCCCCCCCCHHHH
Q 001064 501 YAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQ--IDFLEQLVDKFLMSNSDSPSTANAAER 578 (1167)
Q Consensus 501 ~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~--~~~ar~l~eral~~~~~~~~~l~~~~~ 578 (1167)
|..++.++.. .|++++|+..|++++++.|++...|...+...+..+...+ .+.++++.++......+.+. ...-+
T Consensus 537 ~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~--~~~l~ 613 (681)
T 2pzi_A 537 AFGLARARSA-EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR--VLQIR 613 (681)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT--HHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH--HHHHH
Confidence 9999999777 9999999999999999999999888877766554332111 23344444444333322221 22334
Q ss_pred HHHHHHHHHHHHhh--------C---CH----HHHHHHHHHHHhhhCC
Q 001064 579 EELSCVFLEFLGLF--------G---DA----QLIKKAEDRHARLFLP 611 (1167)
Q Consensus 579 ~~i~~~~l~fe~~~--------G---d~----~~~~~v~~r~~~~~~~ 611 (1167)
..++..-+...... | +. ..++++++++..+-+.
T Consensus 614 ~~ll~~~l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~ 661 (681)
T 2pzi_A 614 ALVLGGALDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPT 661 (681)
T ss_dssp HHHHHHHHHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 45565555554332 2 22 3466777777665553
No 154
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.3e-14 Score=130.02 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=72.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCcee-eeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP-DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
...++|||+|||+++|+++|+++|++||.|.+ |.| +.+ .+|+++|||||+|.+.++|.+||..++..|+||.|+|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i-~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTL-PVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEEC-CBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEE-EEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 35699999999999999999999999999987 654 445 789999999999999999999999899999999999988
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
+.++
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 7653
No 155
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=9.3e-14 Score=126.31 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=73.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++++++|+++|++| .|.+|.| +++ .+|+++|||||+|.+.++|.+||..++..|+|+.|+|..++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i-~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRI-VRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEE-EEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEE-EEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 56999999999999999999999999 8999875 445 68899999999999999999999988999999999999998
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
+++
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 156
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.50 E-value=7.5e-14 Score=127.20 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=73.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++++++|+++|++||.|..+.|. + .+|+++|||||+|.+.++|.+|+.. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~-~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIK-M--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEE-E--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-c--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56999999999999999999999999999998763 3 3788999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
++...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87543
No 157
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=2.1e-12 Score=150.55 Aligned_cols=315 Identities=10% Similarity=0.068 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHH----HHhCCHHHHH-----------HHHHH
Q 001064 97 FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL---CYGYWKKYADHE----ARVGSMDKVV-----------EVYER 158 (1167)
Q Consensus 97 ~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~---~~~~W~~~a~~e----~~~~~~e~A~-----------~l~er 158 (1167)
++.|+..+. .+++++|..+++.+....+. +..+.+-|..+. ...++++.+. +++++
T Consensus 16 l~~w~~~i~------~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 16 INEWYMYIR------RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHH------HcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 345665555 46889999988888776543 555554333332 2334555555 66666
Q ss_pred HHhccCCCHHHHHH------HHHHHHhhcCCHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001064 159 AVQGVTYSVDIWLH------YCIFAINTYGDPETIRRLFERGLAYV---GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYT 229 (1167)
Q Consensus 159 aL~~~P~s~~lw~~------ya~~~~~~~~~~~~Ar~~feral~~~---g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~ 229 (1167)
.-. .+.+.+.++. .+.++. ..|++++|...|++++... +.+.....+|...+.+....++++.|...|+
T Consensus 90 i~~-~~~~~~~~l~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 90 IDK-KQARLTGLLEYYFNFFRGMYEL-DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHH-HTHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHh-cCCCchhHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 433 3444343333 455555 6799999999999999863 3332345778888888888999999999999
Q ss_pred HHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHH
Q 001064 230 RILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAE 309 (1167)
Q Consensus 230 r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~ 309 (1167)
+++++-....+ + ..
T Consensus 168 ~al~~~~~~~~--~----------------------------------------------------------------~~ 181 (383)
T 3ulq_A 168 QAYEIYKEHEA--Y----------------------------------------------------------------NI 181 (383)
T ss_dssp HHHHHHHTCST--T----------------------------------------------------------------HH
T ss_pred HHHHHHHhCcc--c----------------------------------------------------------------hH
Confidence 98765222100 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hc
Q 001064 310 ELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI-----AC 384 (1167)
Q Consensus 310 ~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~-----~~ 384 (1167)
.........+.+|...+++++|+..|+++++. +.-....+.....|..++..+...|++++|+..|++++. ..
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSM--AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 00012233355778888999999999998861 000001122335788899999999999999999999999 45
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----cChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhcCCC
Q 001064 385 -ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVK----RLPEIHLFAARFKEQNGD---IDGARAAYQLVHTETSPG 456 (1167)
Q Consensus 385 -p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p----~~~~l~~~~a~~~e~~g~---~~~A~~~~~~a~~~~~P~ 456 (1167)
+....++..++.++...|++++|...|++++.+... .....+..++.++...|+ +++|+.++++. ...+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHH
Confidence 677889999999999999999999999999998632 122234457778888888 88899988885 44566
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 457 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 457 ~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
...++..++.++..+|++++|..+|++++....
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999875
No 158
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.50 E-value=6e-14 Score=126.67 Aligned_cols=82 Identities=24% Similarity=0.296 Sum_probs=72.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcc-cccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVV-GVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~-~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..++|||+|||.++|+++|+++|++||.|.++.+ +.++.++. ++|||||+|.+.++|.+|+.. +|..|+|+.|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM-PVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3589999999999999999999999999999876 44554444 899999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
+++..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 98754
No 159
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.50 E-value=4.8e-14 Score=136.90 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=76.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEE-ECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35799999999999999999999999999999875 56778899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++++
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 987643
No 160
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=125.17 Aligned_cols=75 Identities=24% Similarity=0.488 Sum_probs=68.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|+.. ++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 56999999999999999999999999999997652 58999999999999999976 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 161
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.50 E-value=8.6e-13 Score=144.95 Aligned_cols=189 Identities=14% Similarity=0.058 Sum_probs=162.7
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc--cCh
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVK--RLP 423 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p--~~~ 423 (1167)
+++.....+...+..+.+.|++++|+..|++++..+|.+ .++|+.++.++...|++++|+..|++++..+|. ..+
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 456667889999998899999999999999999999998 899999999999999999999999999998732 346
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcCCHHHHH
Q 001064 424 EIHLFAARFKEQ--------NGDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLGNLEDAF 478 (1167)
Q Consensus 424 ~l~~~~a~~~e~--------~g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g~~e~A~ 478 (1167)
.+++..+.++.. .|++++|+..|+++ ++..|++..++ +..+.++.++|++++|+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF-IDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH-HHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHH-HHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 788899999999 99999999999998 78899876655 77899999999999999
Q ss_pred HHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 479 SLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS----------RNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 479 ~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~----------g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
..|++++...|+. ...+.++..++..+.. . |++++|..+|+++++.+|++......+..+
T Consensus 169 ~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~-~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 238 (261)
T 3qky_A 169 VTYEAVFDAYPDT---PWADDALVGAMRAYIA-YAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELY 238 (261)
T ss_dssp HHHHHHHHHCTTS---TTHHHHHHHHHHHHHH-HHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHCCCC---chHHHHHHHHHHHHHH-hcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 9999999998753 3346778888887664 4 889999999999999999997666544433
No 162
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.9e-13 Score=128.75 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=73.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.| +.++ +|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADI-LEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE-EECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 35799999999999999999999999999999875 4444 588999999999999999999985 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++...
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87643
No 163
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9e-14 Score=129.37 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=71.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|+.|+.|. + +.++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~---~-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRAR---I-VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEE---E-EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEE---E-EecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3569999999999999999999999886443 3 55777899999999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98754
No 164
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=7.3e-14 Score=128.15 Aligned_cols=81 Identities=25% Similarity=0.346 Sum_probs=72.7
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+.+.++|||+|||.++++++|+++|++||.|.+|.| ++++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTI-CKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 346799999999999999999999999999999875 4444 488999999999999999999985 9999999999999
Q ss_pred eccC
Q 001064 1107 ERRP 1110 (1167)
Q Consensus 1107 ~~r~ 1110 (1167)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8764
No 165
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=2.1e-15 Score=144.01 Aligned_cols=84 Identities=19% Similarity=0.259 Sum_probs=75.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCcee--------eeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKP--------DGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1099 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~ 1099 (1167)
.+.++|||+|||.++++++|+++|++||.|.. |.| +.++.+|+++|||||+|.+.++|.+||.. ++..|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINL-YTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 45799999999999999999999999999998 665 55667899999999999999999999986 899999
Q ss_pred CcEeEEEeccCCCC
Q 001064 1100 GRQVYIEERRPNTG 1113 (1167)
Q Consensus 1100 g~~l~V~~~r~~~~ 1113 (1167)
|+.|+|++++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987643
No 166
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.49 E-value=9.9e-15 Score=142.74 Aligned_cols=79 Identities=18% Similarity=0.076 Sum_probs=70.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++|+++|+++|++|| |.+|.| +.++ +|+++|||||+|.+.++|++||..++..|+||.|+|..+.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i-~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI-EIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC-CCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE-EECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 568999999999999999999999999 667764 4455 4999999999999999999999668999999999999877
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
++
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 167
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=127.24 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=70.7
Q ss_pred CccEEEEecCCCCCCHHHHH----HHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++++|||+|||+++++++|+ ++|++||.|.+|.| +.++.+ +|||||+|.+.++|.+||+. +|..|+|+.|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i-~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVEL-SPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEE-EeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 46899999999999999999 99999999999875 444443 89999999999999999985 99999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|++++++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99998754
No 168
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=2.9e-14 Score=132.50 Aligned_cols=81 Identities=12% Similarity=0.252 Sum_probs=73.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||.++|+++|+++|++||.|.. . .+.++.+|+++|||||+|.+.++|.+||+.+|..|+|+.|+|++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~-~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-L-AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C-CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E-EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 4689999999999999999999999999988 2 3567778899999999999999999999988999999999999998
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 169
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=131.91 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=72.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|..+.+.++. .+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM-MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEE-ECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEc-CCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 56999999999999999999999999999765443332 2788999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87643
No 170
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=127.36 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=70.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
..+.++|||+|||.++|+++|+++|++||.|+ + +++ .+|+++|||||+|.+.++|++||.. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---~-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK---V-PQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---C-CBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---E-EEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34579999999999999999999999999883 2 334 6788999999999999999999985 8999999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998763
No 171
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.48 E-value=7.9e-14 Score=121.97 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=66.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
+..||||||++.+|+++|+++|.+||+|+++++.. +||||||+|.+.++|.+|++. |+..++||.|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 58999999999999999999999999999987522 689999999999999999988 8999999999999874
No 172
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7e-14 Score=135.10 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=73.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||+++|+++|+++|+.||.|..+.+ +.++.+|+++|||||+|.+.++|.+||..++..|+|+.|+|..+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~-~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIY-IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCE-EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEE-EEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 35699999999999999999999999999988644 55667899999999999999999999998899999999999987
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
.+
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 64
No 173
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.48 E-value=9.7e-14 Score=126.36 Aligned_cols=75 Identities=29% Similarity=0.390 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CC--CeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP--IQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~--~~i~g~~l~V~ 1106 (1167)
++++|||+|||+++|+++|+++|++||.|++|.+ + +.||||||+|++.++|.+|++. ++ ..|+|++|+|+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~------~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-M------PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-E------TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-E------cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 6799999999999999999999999999999764 3 2478999999999999999986 44 45899999999
Q ss_pred eccCC
Q 001064 1107 ERRPN 1111 (1167)
Q Consensus 1107 ~~r~~ 1111 (1167)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 98865
No 174
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.7e-14 Score=131.83 Aligned_cols=83 Identities=20% Similarity=0.393 Sum_probs=75.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRL-VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEE-EEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEE-EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 35699999999999999999999999999999875 55777899999999999999999999975 89999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98754
No 175
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=3.5e-13 Score=150.89 Aligned_cols=259 Identities=11% Similarity=0.047 Sum_probs=177.6
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAE--------FPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 163 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~--------~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 163 (1167)
.+|.+..+|..++..+.. .+++++|+.+|++++.. .|....+|..++.++...|++++|+.+|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYAS--QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp TSCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 478889999999999987 48999999999999995 67788999999999999999999999999999873
Q ss_pred --------CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001064 164 --------TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYV-----GTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTR 230 (1167)
Q Consensus 164 --------P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~-----g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r 230 (1167)
|....+|..++..+. ..|++++|+..|++++... +.++....+|..++.+....+++++|..+|++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556778888888888 7899999999999999875 44444567888889999999999999999999
Q ss_pred HHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHH
Q 001064 231 ILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEE 310 (1167)
Q Consensus 231 ~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~ 310 (1167)
++.+-... .... . ..
T Consensus 179 a~~~~~~~-----------~~~~-----------------------------------------------------~-~~ 193 (311)
T 3nf1_A 179 ALEIYQTK-----------LGPD-----------------------------------------------------D-PN 193 (311)
T ss_dssp HHHHHHHT-----------SCTT-----------------------------------------------------C-HH
T ss_pred HHHHHHHH-----------hCCC-----------------------------------------------------C-HH
Confidence 87651100 0000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-cccCCCChhhHHHHHHHH------HHHHHcCChHHHHHHHHHHHHh
Q 001064 311 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPY-FHVKPLSVTELENWHNYL------DFIERDGDFNKVVKLYERCLIA 383 (1167)
Q Consensus 311 ~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~-~~v~pld~~~~~~W~~y~------~~~e~~g~~~~a~~~yeral~~ 383 (1167)
.......+..+|...+++++|+..|++++.... ......++.....|.... ......+.+.++...|++++..
T Consensus 194 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 273 (311)
T 3nf1_A 194 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence 000122234466777788888888888875100 000001111122333333 3333445666777788888877
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
.+....+|..++.++...|++++|..+|++++++.
T Consensus 274 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 274 SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 77777888888888888888888888888888765
No 176
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=8.6e-14 Score=127.86 Aligned_cols=75 Identities=21% Similarity=0.419 Sum_probs=68.4
Q ss_pred CccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
+.++|||+|||+ ++++++|+++|++||.|.+|.+ ++|||||+|.+.++|.+|+.. +|..++|+.|+|++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 579999999998 9999999999999999999764 268999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987543
No 177
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-13 Score=123.38 Aligned_cols=76 Identities=20% Similarity=0.351 Sum_probs=68.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.+. ++||||+|.+.++|.+|+.. ++..|+|+.|+|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356999999999999999999999999999997642 45999999999999999976 99999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987643
No 178
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.47 E-value=5.9e-14 Score=133.54 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=63.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE-----e
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ-----V 1103 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~-----l 1103 (1167)
..++|||+|||+++|+++|+++|++||.|..|.| +.+ |||||+|.+.++|.+||+. ++..|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADV-YRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEE-CTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-ecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 4689999999999999999999999999999765 222 8999999999999999985 999999998 7
Q ss_pred EEEeccCCC
Q 001064 1104 YIEERRPNT 1112 (1167)
Q Consensus 1104 ~V~~~r~~~ 1112 (1167)
+|+..+++.
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 777776643
No 179
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.8e-13 Score=124.94 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=68.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l~V 1105 (1167)
.++++|||+|||+++++++|+++|++||.|.+|.+ ++ .||||||+|++.++|.+|++. ++..|+|+.|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILM-LK------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EC------CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 35799999999999999999999999999999754 32 279999999999999999975 588999999999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
++++.+.-
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99987644
No 180
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.47 E-value=9.3e-14 Score=127.41 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=72.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++++++|+++|++||.|..+.+ +.++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~-~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVC-LKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCE-EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEE-EEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4599999999999999999999999999998865 55677899999999999999999999986 999999999999986
Q ss_pred cC
Q 001064 1109 RP 1110 (1167)
Q Consensus 1109 r~ 1110 (1167)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 181
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.47 E-value=1.4e-13 Score=140.24 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=75.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||..+++++|+++|++||.|..|.| +.++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|.++
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL-NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEE-EecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4699999999999999999999999999999875 56778899999999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 87644
No 182
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=1.8e-12 Score=139.03 Aligned_cols=165 Identities=11% Similarity=0.091 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYV 395 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~-~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya 395 (1167)
.++..|...+++++|+..|+++|+ +++ .+...|..++..+...|++++|+..|++++..+|.+..+|+.++
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLK--------LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHh--------ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 346678889999999999999998 565 66778888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhccCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC--hHHHHHHHHH
Q 001064 396 LCMEASGSMDLAHNALARATHVFVKRLP-------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPG--LLEAIIKHAN 466 (1167)
Q Consensus 396 ~~l~~~g~~e~A~~vl~rA~~~~~p~~~-------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~--~~~~~~~~a~ 466 (1167)
.++...|++++|+..|++++++. |+++ .+|+..+.++...|++++|+..|+++ ++++|+ +..+|+.++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA-TDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH-HhcCCCcccHHHHHHHHH
Confidence 99999999999999999999988 7777 66889999999999999999999998 789999 8999999999
Q ss_pred HHHHcCCH---------------------------HHHHHHHHHHHHhhhCC
Q 001064 467 MERRLGNL---------------------------EDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 467 ~e~r~g~~---------------------------e~A~~~~~kAl~~~~~~ 491 (1167)
++...|+. ++|+.+|++++++.|++
T Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 88888877 89999999999998753
No 183
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.6e-13 Score=129.25 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=71.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.+ ++++ +.++|||||+|.+.++|.+|+.. +|..|+|+.|+|++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEI-IFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEE-CCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEE-EECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35699999999999999999999999999999875 3343 34899999999999999999986 99999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8875
No 184
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.9e-13 Score=125.82 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=67.2
Q ss_pred CccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~--~~~i~g~~l~V 1105 (1167)
++++|||+|||+ ++|+++|+++|++||.|.+|.| ++ .+|||||+|++.++|.+||+. + +..|+|+.|+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LN------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CS------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-Ec------CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 679999999999 9999999999999999999865 32 358999999999999999986 4 56799999999
Q ss_pred EeccCCC
Q 001064 1106 EERRPNT 1112 (1167)
Q Consensus 1106 ~~~r~~~ 1112 (1167)
++++.+.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9998653
No 185
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.1e-13 Score=128.93 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=69.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~--~~~i~g~~l~V 1105 (1167)
.++++|||+|||+++|+++|+++|++||.|++|.| ++ .||||||+|++.++|.+|++. + +..|+|+.|+|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i-~~------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE-EG------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eC------CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 35799999999999999999999999999999875 32 279999999999999999986 3 68999999999
Q ss_pred EeccCCCCC
Q 001064 1106 EERRPNTGS 1114 (1167)
Q Consensus 1106 ~~~r~~~~~ 1114 (1167)
++++++.-.
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 186
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=129.33 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=70.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||+++|+++|+++|+.| .|.+|.| +.++ .|+++|||||+|.+.++|.+||..++..|+||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i-~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHL-LKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEE-CCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEE-EECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999 8888875 4455 4899999999999999999999889999999999998775
Q ss_pred C
Q 001064 1110 P 1110 (1167)
Q Consensus 1110 ~ 1110 (1167)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 187
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2e-13 Score=128.66 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=75.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCC-ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-C--CCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-S--PIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~--~~~i~g~~l~V 1105 (1167)
+.++|||+|||.++|+++|+++|++||. |.+|.+...++.+|+++|||||+|.+.++|.+|+.. + +..|+|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4699999999999999999999999998 999875436778889999999999999999999986 4 59999999999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
++++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987644
No 188
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.46 E-value=2.5e-13 Score=127.59 Aligned_cols=79 Identities=27% Similarity=0.321 Sum_probs=72.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||..+++++|+++|++||.|.+|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-HYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35799999999999999999999999999999875 4455 899999999999999999999986 99999999999998
Q ss_pred cc
Q 001064 1108 RR 1109 (1167)
Q Consensus 1108 ~r 1109 (1167)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 189
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=2.7e-11 Score=141.13 Aligned_cols=239 Identities=8% Similarity=0.004 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-------HHH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-------PEY 390 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~-------~~~ 390 (1167)
++..+...+++++|+..|+++++. +.-.+-++.....|..++.++...|++++|+..|++|+..++.. ..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESK--LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH--HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 455677889999999999999872 11111234456789999999999999999999999999985543 347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----cC-CChHH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTE-----TS-PGLLE 459 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-----~~-P~~~~ 459 (1167)
+..++.++...|++++|...|++++.+.+.. ...++..+|.++...|++++|+..|+++ ++ .+ |....
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA-IAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhccchhHHH
Confidence 8899999999999999999999999987322 1247888999999999999999999998 44 35 88889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhcCCCHHHH
Q 001064 460 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN---AEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 460 ~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~---~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
++..++.++.++|++++|..+|++++...+...+ +.....+..++.+.. ..|+ +++|..++++. ...+....++
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD-VIYLSEFEFLKSLYL-SGPDEEAIQGFFDFLESK-MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 9999999999999999999999999998753211 111122344555543 3777 88888888877 3333444566
Q ss_pred HHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001064 537 EALIHFESIQSSPKQIDFLEQLVDKFLMS 565 (1167)
Q Consensus 537 ~~~~~~e~~~~~~~~~~~ar~l~eral~~ 565 (1167)
..++.+....++ .+.+...|++++..
T Consensus 343 ~~la~~y~~~g~---~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 343 IDVAKYYHERKN---FQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHHH
Confidence 666777666666 56678888888654
No 190
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=3.5e-14 Score=123.94 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=69.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
+|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++.++..|+|+.|+|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL-PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECC-CCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999875 56777899999999999999999999999999999999999864
No 191
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.46 E-value=4.2e-12 Score=129.89 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR 393 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ 393 (1167)
+...+...|...+++++++..|+++++ .++.+...|..++..+...|++++|+.+|++++..+|.+..+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYD--------ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCC--------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 334446678889999999999999987 666778899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
++.++...|++++|..+|++++... |.+..+++.++.++...|++++|+.+|+++ ++..|++..+|..++.++...|+
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA-LGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH-HhcCccchHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987 788999999999999999999999999998 77899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCC
Q 001064 474 LEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 474 ~e~A~~~~~kAl~~~~~~ 491 (1167)
+++|..+|++++...|+.
T Consensus 160 ~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 160 HEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 999999999999998754
No 192
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=6.7e-14 Score=122.83 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=69.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++..+..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLV-MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEE-ECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-ecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 47999999999999999999999999999875 56777899999999999999999999998559999999999875
No 193
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=129.32 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=73.3
Q ss_pred CccEEEEecCCCCCCHHHHH---HHHhcCCCceeeeEeeecCCC---cccccEEEEEECCHHHHHHHHHh-CCCeeeCcE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIE---EEFQNFGRIKPDGVFVRNRKD---VVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1102 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~---g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~ 1102 (1167)
+.++|||+|||+++++++|+ ++|++||.|.+|.| ++++.+ ++++|||||+|.+.++|++||+. +|..|+|+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i-~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVI-NNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEE-ECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEE-ecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 56899999999999999999 99999999999876 445543 35679999999999999999987 999999999
Q ss_pred eEEEeccCCC
Q 001064 1103 VYIEERRPNT 1112 (1167)
Q Consensus 1103 l~V~~~r~~~ 1112 (1167)
|+|++++++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998865
No 194
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.45 E-value=2.4e-13 Score=137.50 Aligned_cols=83 Identities=24% Similarity=0.365 Sum_probs=76.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEC-CCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4689999999999999999999999999999875 56777899999999999999999999986 899999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++++
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87644
No 195
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=128.71 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=71.7
Q ss_pred CccEEEEecCCCCC------CHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCc-
Q 001064 1030 EVKSVYVRNLPSTV------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR- 1101 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~------t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~- 1101 (1167)
.+++|||+|||+.+ |+++|+++|++||.|.+|.|. +.+|+++|||||+|.+.++|.+||.. +|..|+|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~---~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP---EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC---CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee---CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 46899999999999 789999999999999997653 56789999999999999999999986 89999998
Q ss_pred EeEEEeccCC
Q 001064 1102 QVYIEERRPN 1111 (1167)
Q Consensus 1102 ~l~V~~~r~~ 1111 (1167)
.|+|++++..
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 196
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.45 E-value=9e-14 Score=136.19 Aligned_cols=84 Identities=24% Similarity=0.358 Sum_probs=76.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI-PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC-CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35689999999999999999999999999999875 55777899999999999999999999986 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
+++..+
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987544
No 197
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=3.4e-13 Score=125.96 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=69.0
Q ss_pred CCCccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEe
Q 001064 1028 EGEVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQV 1103 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l 1103 (1167)
..++++|||+|||++ +++++|+++|++||.|.+|.| + ++||||||+|++.++|.+||+. ++..|+||.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-M------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-E------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-e------cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 346799999999998 999999999999999999765 2 2579999999999999999985 4678999999
Q ss_pred EEEeccCCCC
Q 001064 1104 YIEERRPNTG 1113 (1167)
Q Consensus 1104 ~V~~~r~~~~ 1113 (1167)
+|++++.+..
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999976543
No 198
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=2.1e-13 Score=130.33 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=72.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCC---ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
.+.++|||+|||+++|+++|+++|+.||. |..|+| +.++. |+++|||||+|.+.++|++||+.++..|+||.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i-~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF-IYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEE-EECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEE-EECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 35699999999999999999999999999 888875 44554 89999999999999999999999999999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
..+..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98754
No 199
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.7e-13 Score=123.14 Aligned_cols=74 Identities=31% Similarity=0.417 Sum_probs=67.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcC--CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNF--GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+.++|||+|||+++|+++|+++|++| |.|.+|.+ .+|||||+|.+.++|.+||.. ++..|+|+.|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 56999999999999999999999999 88987643 368999999999999999985 9999999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998754
No 200
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=6.6e-13 Score=123.19 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=67.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh---CCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA---SPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~---~~~~i~g~~l~V 1105 (1167)
.+.++|||+|||+++++++|+++|++||.|.+|.+ ++ .||||||+|++.++|.+|++. ++..|+|+.|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i-~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-MP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE-ET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 35699999999999999999999999999999754 32 379999999999999999975 457799999999
Q ss_pred EeccCCCC
Q 001064 1106 EERRPNTG 1113 (1167)
Q Consensus 1106 ~~~r~~~~ 1113 (1167)
++++.+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99987543
No 201
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.4e-13 Score=123.36 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=70.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
....++|||+|||.++|+++|+++|++||.|. +.+ + +++++|||||+|.+.++|.+||.. +|..|+|+.|+|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~-~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRL-T----WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEE-E----EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEE-E----cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 33568999999999999999999999999996 554 3 245789999999999999999976 9999999999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++++
T Consensus 90 ~a~~~~~ 96 (97)
T 2e5j_A 90 LARQQRD 96 (97)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9987643
No 202
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.44 E-value=1.5e-13 Score=134.02 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=72.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCC---ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
.+.++|||+|||+++|+++|+++|++||. |.+|.| ++++. |+++|||||+|.+.++|++||+.++..|+||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i-~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHF-IYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEE-EECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEE-EECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 35799999999999999999999999999 888875 45665 99999999999999999999998899999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
..+.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 88754
No 203
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.44 E-value=1.4e-13 Score=129.05 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=68.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCC-CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+++|||+|||+++++++|+++|++|| .|..+.|. . ++++|||||+|.+.++|++||+. +|..|+|+.|+|+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~--~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN--T---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS--S---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE--c---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 468999999999999999999999999 89986642 1 24789999999999999999976 89999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
++..
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 204
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=130.93 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=69.9
Q ss_pred CccEEEEecCCCCCCHHHHH----HHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++++|||+|||+.+++++|+ ++|++||.|.+|.+ ..+|+++|||||+|.+.++|..||.. +|..|.|+.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i----~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV----DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE----CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe----ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 46899999999999999876 69999999988643 23678999999999999999999976 89999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|++++.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998753
No 205
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=4.2e-13 Score=121.62 Aligned_cols=75 Identities=24% Similarity=0.398 Sum_probs=67.9
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|.+|.+. +|||||+|.+.++|.+||.. +|..|+|+.|+|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356999999999999999999999999999997642 45999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98753
No 206
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.44 E-value=9.3e-13 Score=127.25 Aligned_cols=82 Identities=26% Similarity=0.299 Sum_probs=74.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..+++|||+|||.++++++|+++|++||.|.+|.| ++++ +|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i-~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEE-ECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45799999999999999999999999999999875 4455 899999999999999999999985 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
+.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87643
No 207
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=125.73 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=70.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEE
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~ 1106 (1167)
+.+.++|||+|||.++++++|+++|++||.|+.+ ..+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE------EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe------CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3467999999999999999999999999998753 44678999999999999999999986 8999999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 998754
No 208
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.44 E-value=7.7e-13 Score=132.50 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
+.+|...+++++++..|++++. .+|.+...|..++.++.+.|++++|+..|+++|..+|.++++|+.++.++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 75 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY 75 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcc--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456677888999999999987 78888889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHH-HHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 399 EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAA-YQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~-~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
...|++++|+..|++++++. |+++.+|+.++.++.+.|++++|... ++++ ++++|+++.+|...+.++.+.|+
T Consensus 76 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a-l~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERA-AKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH-HHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999987 88999999999999999998876665 5887 78999999999988888887774
No 209
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.8e-14 Score=126.39 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=71.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++++++|+++|++||.|.++.| +.++.+|+++|||||+|.+.++|.+|++. +|..|+|+.|+|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKA-ILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEE-ECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4699999999999999999999999999999875 55777899999999999999999999986 899999998877654
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 210
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.6e-13 Score=122.89 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCC-ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CC-CeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGR-IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SP-IQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~-~~i~g~~l~V~ 1106 (1167)
+.++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|.+|++. +| ..|+|+.|+|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 4689999999999999999999999999 665432 2578999999999999999986 89 99999999999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998753
No 211
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7e-13 Score=126.07 Aligned_cols=82 Identities=17% Similarity=0.326 Sum_probs=73.1
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee--------
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-------- 1098 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i-------- 1098 (1167)
+.+.++|||+|||.++|+++|+++|++||.|.+|.| ++++ +|+++|||||+|.+.++|.+||.. +|..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRI-LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEE-EECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-EECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 346799999999999999999999999999999876 4555 899999999999999999999986 89888
Q ss_pred eCcEeEEEeccCC
Q 001064 1099 AGRQVYIEERRPN 1111 (1167)
Q Consensus 1099 ~g~~l~V~~~r~~ 1111 (1167)
.|+.|+|.+++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998864
No 212
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.43 E-value=1.6e-12 Score=137.96 Aligned_cols=170 Identities=12% Similarity=0.049 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHh
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIR----------------YVLCMEASGSMDLAHNALARATHV 417 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~----------------ya~~l~~~g~~e~A~~vl~rA~~~ 417 (1167)
.+.+...+..+...|++++|+.+|++++..+|.++++|+. ++.++...|++++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556666777778999999999999999999999999999 999999999999999999999998
Q ss_pred hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhCCCccC
Q 001064 418 FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN--LEDAFSLYEQAIAIEKGKEHSQ 495 (1167)
Q Consensus 418 ~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~--~e~A~~~~~kAl~~~~~~~~~~ 495 (1167)
. |+++.+|+.++.++...|++++|+..|+++ ++++|++..+|+.++.++...|+ .+.+...|++++...+
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKI-LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK------ 155 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc------
Confidence 8 899999999999999999999999999998 78999999999999998766553 4566777777764332
Q ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 496 TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 496 ~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
....+...+..... .|++++|+..|+++++++|++.
T Consensus 156 -~~~a~~~~g~~~~~-~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 156 -MQYARYRDGLSKLF-TTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp -HHHHHHHHHHHHHH-HHTHHHHHHHHHHHTTTSCCHH
T ss_pred -hhHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCHH
Confidence 11234445555455 8999999999999999999753
No 213
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.43 E-value=4.3e-13 Score=132.65 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=72.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++++++|+++|++||.|.++.| ++++.+|+++|||||+|.+.++|.+||+. +|..|+|+.|+|++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI-PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC-CCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEE-eecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35799999999999999999999999999999875 56777899999999999999999999976 89999999999986
Q ss_pred c
Q 001064 1108 R 1108 (1167)
Q Consensus 1108 ~ 1108 (1167)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 214
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.43 E-value=6.1e-14 Score=127.22 Aligned_cols=79 Identities=27% Similarity=0.485 Sum_probs=70.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.+ |.+|+.. +|..|+|+.|+|+++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKL-IYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEE-CCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEE-EEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999999999875 567778999999999999999 9999987 89999999999999887
Q ss_pred CC
Q 001064 1111 NT 1112 (1167)
Q Consensus 1111 ~~ 1112 (1167)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 215
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.43 E-value=1e-13 Score=128.98 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=73.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
...++|||+|||.++++++|+++|++||.|.+|.+ +.++ +|+++|||||+|.+.++|.+|+. ++..|+|+.|.|..+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKI-ITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-EECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEE-EECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 35699999999999999999999999999999876 4555 89999999999999999999999 999999999999988
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
No 216
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.43 E-value=2.2e-11 Score=136.18 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhh--hccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 370 FNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL-AHNALARATHVF--VKRLPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 370 ~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~-A~~vl~rA~~~~--~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
+++++..++++|..+|.+..+|.....++...|+..+ +...+.+++... .+.++.++..+++++.+.|+.++|.++|
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3456667777777777777777777777766665333 334444444322 1456777777777777778888888888
Q ss_pred HHHhhhcCCChHHHHHHHH
Q 001064 447 QLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 447 ~~a~~~~~P~~~~~~~~~a 465 (1167)
+++..+++|-....|...+
T Consensus 282 ~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHH
Confidence 8863347887777776554
No 217
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=122.60 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=65.2
Q ss_pred ccEEEEecCCCCC------CHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCc-E
Q 001064 1031 VKSVYVRNLPSTV------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR-Q 1102 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~------t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~-~ 1102 (1167)
+++|||+|||..+ ++++|+++|++||.|.+|.+ . +.+|+++|||||+|.+.++|.+|+.. +|..|+|+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i--~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY--P-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEEC--C-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEe--c-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3789999999999 77999999999999999764 2 56889999999999999999999986 89999999 8
Q ss_pred eEE
Q 001064 1103 VYI 1105 (1167)
Q Consensus 1103 l~V 1105 (1167)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 876
No 218
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=5.1e-13 Score=126.07 Aligned_cols=74 Identities=24% Similarity=0.373 Sum_probs=67.5
Q ss_pred CccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..++|||+|||.+ +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4589999999999 999999999999999999764 468999999999999999966 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88643
No 219
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.42 E-value=3.5e-12 Score=160.34 Aligned_cols=179 Identities=13% Similarity=0.004 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 001064 323 KKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG 402 (1167)
Q Consensus 323 ~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g 402 (1167)
...+++++|+..|++++.+.+-....++|.....|...+..+...|++++|+..|++++..+|.+.++|+.++.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 45678889999999998211111112778888999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001064 403 SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYE 482 (1167)
Q Consensus 403 ~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~ 482 (1167)
++++|+..|++++++. |+++.+|+.++.++.+.|++++ +..|+++ ++++|++..+|+.++.++.++|++++|+..|+
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a-l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTV-WSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHH-HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999988 8999999999999999999999 9999998 78999999999999999999999999999999
Q ss_pred HHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 483 QAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 483 kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
+++++.| ..+.+|..++..+..
T Consensus 559 ~al~l~P------~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 559 EVPPTSR------HFTTARLTSAVTLLS 580 (681)
T ss_dssp TSCTTST------THHHHHHHHHHHTC-
T ss_pred hhcccCc------ccHHHHHHHHHHHHc
Confidence 9999985 346778888877544
No 220
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=129.51 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=72.2
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCC---ceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGR---IKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
...++|||+|||+++|+++|+++|+.||. |..|.| +.++. |+++|||||+|.+.++|.+||..++..|+||.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i-~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHF-LLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEEC-CCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEE-EECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 35799999999999999999999999998 888775 44555 89999999999999999999998899999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
..+.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 98764
No 221
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=6.8e-13 Score=122.64 Aligned_cols=77 Identities=18% Similarity=0.304 Sum_probs=69.1
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|..|.+. +.+|||||+|.+.++|.+|++. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 356899999999999999999999999999997642 2478999999999999999976 89999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98754
No 222
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=6.9e-13 Score=121.30 Aligned_cols=77 Identities=25% Similarity=0.472 Sum_probs=68.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++|+++|+++|++||.|.+| +.++.+|+ ||||+|.+.++|.+||..+|..|+|+.|+|+.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v---~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV---VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE---EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE---EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 45899999999999999999999999999985 45666654 9999999999999999988999999999999876
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 223
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.41 E-value=8.6e-13 Score=136.38 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=94.2
Q ss_pred hhHhHHHHHHHHhhhcC-----ccccccccc-CCceEE-EEcCCc--------------------------cc-------
Q 001064 720 QVGSYFVGQYYQVLQQQ-----PDLVHQFYS-DASSMI-RVDGDS--------------------------TE------- 759 (1167)
Q Consensus 720 ~vg~~Fv~~YY~~l~~~-----p~~l~~fY~-~~s~~~-~~~g~~--------------------------~~------- 759 (1167)
.++..|+++||..+++. |..|..+|+ ++|.+. +.+... ..
T Consensus 14 ~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~~r~ 93 (205)
T 3nv0_A 14 TLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFAANRA 93 (205)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTTTSSC
T ss_pred HHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccHHHHH
Confidence 57889999999999987 899999999 577665 222110 00
Q ss_pred --chhchHHHHHHHhcCCCcceeEe--eeeccccCCCceEEEEEEEEEec--------CccccceeEEEEEEeeeC-CeE
Q 001064 760 --SASSMLDIHSLVISLNFTAIEIK--TINSLGSWNGGVLVMVSGSVKTK--------EFCRRRKFVQTFFLAPQE-KGY 826 (1167)
Q Consensus 760 --~~~~~~~i~~~~~~l~~~~~~i~--~~d~q~~~~~~i~v~v~G~~~~~--------~~~~~~~F~q~F~L~~~~-~~y 826 (1167)
-..|.++|.++|.+||.+++.+. +||||+..+++|+|+|+|.++.. +..+++.|+|||+|.|.+ ++|
T Consensus 94 ~~L~~G~~~I~~~L~~LP~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~~~g~~ 173 (205)
T 3nv0_A 94 SRISHGAMDIVVALSRLPATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEGKV 173 (205)
T ss_dssp CSCEEHHHHHHHHHHHSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEECSTTCE
T ss_pred HHHhhCHHHHHHHHHhCCCeEEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEECCCCcE
Confidence 01477899999999999888777 48999998889999999999965 134689999999999996 789
Q ss_pred EEEcceEEe
Q 001064 827 FVLNDIFHF 835 (1167)
Q Consensus 827 ~v~nd~fr~ 835 (1167)
+|.||+|-.
T Consensus 174 ~I~ND~L~I 182 (205)
T 3nv0_A 174 AIVSDQLFI 182 (205)
T ss_dssp EEEEEEEEE
T ss_pred EEEecEEEe
Confidence 999999954
No 224
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.41 E-value=5.6e-13 Score=125.08 Aligned_cols=75 Identities=25% Similarity=0.388 Sum_probs=68.8
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|.+|.+. +|||||+|.+.++|.+|+.. +|..|+|+.|+|++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356999999999999999999999999999997653 68999999999999999986 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++++.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 98754
No 225
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7.6e-13 Score=124.68 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=69.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
...++|||+|||.++++++|+++|++||.|.+|.+ +++ +|||||+|.+.++|.+||.. +|..|+|+.|+|++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV-FPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEE-ETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 35799999999999999999999999999999765 222 68999999999999999976 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987643
No 226
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=2.3e-13 Score=130.15 Aligned_cols=79 Identities=27% Similarity=0.132 Sum_probs=70.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCc----eeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRI----KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i----~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
+.++|||+|||+++|+++|+++|++||.| ..|.| +.+ .+|+++|||||+|.+.++|++||+.++..|+||.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i-~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILF-VTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEE-EEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEE-EEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 56899999999999999999999999986 57765 445 5899999999999999999999998999999999999
Q ss_pred EeccC
Q 001064 1106 EERRP 1110 (1167)
Q Consensus 1106 ~~~r~ 1110 (1167)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87653
No 227
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=4.2e-13 Score=124.53 Aligned_cols=75 Identities=29% Similarity=0.436 Sum_probs=67.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
++|||+|||.++|+++|+++|++||.|.+|.+ +++ ++|||||+|.+.++|.+|++. ++..|+|+.|+|+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-ARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEE-ESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-eeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999775 322 679999999999999999986 89999999999999987
Q ss_pred CC
Q 001064 1111 NT 1112 (1167)
Q Consensus 1111 ~~ 1112 (1167)
+.
T Consensus 75 ~~ 76 (101)
T 2hvz_A 75 MP 76 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 228
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.41 E-value=8e-13 Score=121.48 Aligned_cols=73 Identities=22% Similarity=0.421 Sum_probs=67.2
Q ss_pred CccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++++|||+|||. ++++++|+++|++||.|.+|.+ ++|||||+|.+.++|.+|+.. +|..++|+.|+|++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 469999999998 9999999999999999999764 268999999999999999986 89999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
++++
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 229
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.41 E-value=3.6e-13 Score=124.02 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=71.6
Q ss_pred CccEEEEecCCCCCCHHHHH----HHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++++|||+|||.++++++|+ ++|++||.|.+|.+. .+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS----RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC----HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE----cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 56999999999999999999 999999999987542 3578899999999999999999986 99999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|++++++.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998754
No 230
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.8e-13 Score=124.19 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=68.4
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.+++|||+|||.++++++|+++|++||.|.++.+. +++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 46899999999999999999999999999997652 3679999999999999999976 999999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 231
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=2.3e-10 Score=132.45 Aligned_cols=207 Identities=11% Similarity=0.018 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----CHHHHHHHHH
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-----YPEYWIRYVL 396 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~-----~~~~w~~ya~ 396 (1167)
|...+++.+|+..|++++...--...+..+.....+..++..+...|++++|+.+|++++..++. ....|..++.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 34444555555555555541000000011233455667777778899999999999999998764 2457888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhc-cChHHHH-----HHHHHHHHcCCHHHHHHHHHHHhhhcCCCh----HHHHHHHHH
Q 001064 397 CMEASGSMDLAHNALARATHVFVK-RLPEIHL-----FAARFKEQNGDIDGARAAYQLVHTETSPGL----LEAIIKHAN 466 (1167)
Q Consensus 397 ~l~~~g~~e~A~~vl~rA~~~~~p-~~~~l~~-----~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~----~~~~~~~a~ 466 (1167)
++...|++++|...+++++.+... ..+..|. ..+.++...|++++|+..++++ ....+.. ...+..++.
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT-AKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS-CCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC-CCCCCCcchhhHHHHHHHHH
Confidence 999999999999999999987532 2222232 2345577899999999999997 5555542 335678888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 467 MERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 467 ~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
++...|++++|..++++++...+..........++..++..+.. .|+.++|+..|++++...+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ-AGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999865321111223466777888766 9999999999999998654
No 232
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.39 E-value=3.3e-13 Score=129.28 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=68.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCce--eeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIK--PDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
..++|||+|||+++|+++|+++|++| .|. +|.| +.++. |+++|||||+|.+.++|++||+.++..|+||.|+|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i-~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITL-PVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEEC-CCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEE-EECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 46889999999999999999999999 566 7654 44554 9999999999999999999999888999999999987
Q ss_pred ccC
Q 001064 1108 RRP 1110 (1167)
Q Consensus 1108 ~r~ 1110 (1167)
+.+
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 653
No 233
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2e-12 Score=118.90 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=67.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|+ ++|+++|+++|++||.|.+|.| ++++|||||+|.+.++|.+||.. ++..|+|+.|+|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-------~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-------DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-------ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-------cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35689999996 8999999999999999999764 24789999999999999999976 89999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987543
No 234
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.39 E-value=2.9e-11 Score=135.18 Aligned_cols=236 Identities=9% Similarity=0.026 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhcCC
Q 001064 309 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG--DFNKVVKLYERCLIACAN 386 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g--~~~~a~~~yeral~~~p~ 386 (1167)
+.....+.....+....+..++++..++++|. ++|....+|..-...+...+ ++++++.+++++|..+|.
T Consensus 30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~--------~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk 101 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEYSERALHITELGIN--------ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK 101 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc
Confidence 33444444444444555555689999999999 89999999999999988888 999999999999999999
Q ss_pred CHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHH--HHHHHHHHHhhhcCCCh
Q 001064 387 YPEYWIRYVLCM----EAS---GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID--GARAAYQLVHTETSPGL 457 (1167)
Q Consensus 387 ~~~~w~~ya~~l----~~~---g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~--~A~~~~~~a~~~~~P~~ 457 (1167)
+..+|..-..++ ... ++.++++.++.++++.+ |++..+|....-++...|.++ ++++.++++ ++.+|.|
T Consensus 102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~-i~~d~~N 179 (306)
T 3dra_A 102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKV-IDTDLKN 179 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH-HHHCTTC
T ss_pred cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHH-HHhCCCC
Confidence 999999999888 666 78999999999999988 899999999999999999988 999999998 7889999
Q ss_pred HHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhc-
Q 001064 458 LEAIIKHANMERRLGN------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN-AEKARQILVDSLDHV- 529 (1167)
Q Consensus 458 ~~~~~~~a~~e~r~g~------~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~-~~~Ar~i~~kal~~~- 529 (1167)
..+|..+..+..+.+. +++++..++++|...|.+ ..+|..+..++.. .|+ .++...+++++++..
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n------~SaW~y~~~ll~~-~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN------PSTWNYLLGIHER-FDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHH-TTCCGGGGHHHHHTTEEGGG
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC------ccHHHHHHHHHHh-cCCChHHHHHHHHHHHhccC
Confidence 9999999998888887 899999999999999754 5688877777665 554 566777888888876
Q ss_pred --CCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 530 --QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 530 --p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
+.+...+..++......++ .+.+..+|+++..
T Consensus 253 ~~~~s~~al~~la~~~~~~~~---~~~A~~~~~~l~~ 286 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKK---YNESRTVYDLLKS 286 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHh
Confidence 8888888877777665554 6778999999875
No 235
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=1e-12 Score=120.90 Aligned_cols=77 Identities=19% Similarity=0.423 Sum_probs=68.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee--CcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA--GRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~--g~~l~V~ 1106 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.+ +. .+|||||+|.+.++|.+|++. ++..|+ |+.|+|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~-~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDH-VK------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEE-CS------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eC------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 5689999999999999999999999999999764 21 278999999999999999986 899999 9999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++++
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9988643
No 236
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.39 E-value=5.4e-13 Score=124.44 Aligned_cols=78 Identities=12% Similarity=0.221 Sum_probs=69.0
Q ss_pred cEEEEecC----CCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECC----HHH----HHHHHH--h-CCC
Q 001064 1032 KSVYVRNL----PSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFED----ISG----VQNAIQ--A-SPI 1096 (1167)
Q Consensus 1032 ~~l~V~nl----p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~----~~~----a~~Al~--~-~~~ 1096 (1167)
..|||+|| |+.+++.+|+++|+.||+|.++.+ +.|+.||+++|||||+|.| .++ |.+|+. . +|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~l-i~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEA-FNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEE-EECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEE-EecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 999999999999999999999986 6799999999999999996 322 788887 4 899
Q ss_pred eeeCcEeEEEeccC
Q 001064 1097 QLAGRQVYIEERRP 1110 (1167)
Q Consensus 1097 ~i~g~~l~V~~~r~ 1110 (1167)
.|+|+.|+|+..+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 99999999998664
No 237
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=2.5e-11 Score=133.18 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhhhccC
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACAN---YPEYWIRYVLCMEAS----------GSMDLAHNALARATHVFVKRL 422 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~---~~~~w~~ya~~l~~~----------g~~e~A~~vl~rA~~~~~p~~ 422 (1167)
.|..++.++...|++++|+..|++++...|. ..++|+.++.++... |++++|+..|+++++.+ |++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~ 228 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDS 228 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCC
Confidence 3666777778889999999999999998887 567888888888766 77788888888888877 565
Q ss_pred hHH
Q 001064 423 PEI 425 (1167)
Q Consensus 423 ~~l 425 (1167)
+.+
T Consensus 229 ~~~ 231 (261)
T 3qky_A 229 PLL 231 (261)
T ss_dssp THH
T ss_pred hHH
Confidence 443
No 238
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.6e-12 Score=116.46 Aligned_cols=74 Identities=23% Similarity=0.429 Sum_probs=66.7
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeeeCcEeEEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLAGRQVYIE 1106 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~g~~l~V~ 1106 (1167)
.+.++|||+|||.++++++|+++|++||.|.+|.+. + ++|||||+|.+.++|.+|+.. ++..++|+.|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-Q------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-G------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-C------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456999999999999999999999999999997652 2 479999999999999999984 7999999999999
Q ss_pred ecc
Q 001064 1107 ERR 1109 (1167)
Q Consensus 1107 ~~r 1109 (1167)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 875
No 239
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.37 E-value=9.2e-13 Score=131.92 Aligned_cols=143 Identities=16% Similarity=0.177 Sum_probs=126.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHH
Q 001064 362 DFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDG 441 (1167)
Q Consensus 362 ~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~ 441 (1167)
..+...|++++++..|++++...|.++..|+.+|.++...|++++|+..|++++++. |+++.+|..++.++...|++++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 344566889999999999999989888999999999999999999999999999988 8999999999999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 442 ARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSL-YEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~-~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
|+..|+++ ++++|++..+|+.++.++.+.|+++++... +++|+++.|++ +.+|...+.++.. .|
T Consensus 84 A~~~~~~a-l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~------~~~~~l~~~ll~~-~G 148 (150)
T 4ga2_A 84 AVECYRRS-VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS------PAVYKLKEQLLDC-EG 148 (150)
T ss_dssp HHHHHHHH-HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC------HHHHHHHHHHHHT-CC
T ss_pred HHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHH-hC
Confidence 99999998 789999999999999999999999876655 69999999753 6777777776544 55
No 240
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=8.9e-13 Score=118.98 Aligned_cols=77 Identities=22% Similarity=0.253 Sum_probs=60.6
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||+++|+++|+++|++||.|.+|.|.. .+||||||+|++.++|.++ ....+.++|+.|.|..+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~------~srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK------PFRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS------SCCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee------CCCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEc
Confidence 3569999999999999999999999999999987532 2789999999999998843 22234456999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+++.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 8764
No 241
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=8.6e-11 Score=136.64 Aligned_cols=315 Identities=11% Similarity=0.051 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH----hCCHHHHH---------HHHHHHHh
Q 001064 98 SAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPL---CYGYWKKYADHEAR----VGSMDKVV---------EVYERAVQ 161 (1167)
Q Consensus 98 ~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~---~~~~W~~~a~~e~~----~~~~e~A~---------~l~eraL~ 161 (1167)
+.|+..+. .+++.+|..+++.+...... +..+.+-|..+..+ .+.+..+. +.+++.-.
T Consensus 17 ~~wy~~i~------~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 17 NEWYKMIR------QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHH------HcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 45655554 46889999999887765533 44555444333322 23333333 55554322
Q ss_pred cc-CCC----HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 001064 162 GV-TYS----VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT---DYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILE 233 (1167)
Q Consensus 162 ~~-P~s----~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~---d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~ 233 (1167)
.. +.+ ...|+..+.++. ..|++++|...|++++..... ++....++...+.+....++++.|...|+++++
T Consensus 91 ~~~~~~~~l~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 91 PQKKLTGLLKYYSLFFRGMYEF-DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11 111 113444455555 679999999999999976432 222346677777888888999999999999876
Q ss_pred cchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhCCCccchhhhccccccCCccccccCCccccCcchHHHHHH
Q 001064 234 NPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEK 313 (1167)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~ 313 (1167)
+.......- .....
T Consensus 170 ~~~~~~~~~------------------------------------------------------------------~~~~~ 183 (378)
T 3q15_A 170 IYQNHPLYS------------------------------------------------------------------IRTIQ 183 (378)
T ss_dssp HHHTSTTCH------------------------------------------------------------------HHHHH
T ss_pred HHHhCCCch------------------------------------------------------------------hhHHH
Confidence 532210000 00001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hcCCCH
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLI-----ACANYP 388 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~-----~~p~~~ 388 (1167)
.....+.+|...+++++|+..|+++++.. .-..........+..++..+...|++++|+..|++++. .+|...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELA--MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 22233556788888999999999888610 00001122345788889999999999999999999999 677778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc----cChHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhcCCChHHHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFVK----RLPEIHLFAARFKEQNGD---IDGARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p----~~~~l~~~~a~~~e~~g~---~~~A~~~~~~a~~~~~P~~~~~~ 461 (1167)
.++..++.++...|++++|...+++++.+... .....+..++.++...++ +.+|+..+++. ...+....++
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~--~~~~~~~~~~ 339 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK--NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC--CChhHHHHHH
Confidence 89999999999999999999999999998632 122333445566666777 88888888874 4456667788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 462 IKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 462 ~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
...+.++...|++++|...|+++++...
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998763
No 242
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.36 E-value=1e-10 Score=131.60 Aligned_cols=226 Identities=10% Similarity=-0.024 Sum_probs=185.6
Q ss_pred HHHH-HHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhcCCCHHHHHHH
Q 001064 326 KEFD-SKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD----------FNKVVKLYERCLIACANYPEYWIRY 394 (1167)
Q Consensus 326 ~~~~-~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~----------~~~a~~~yeral~~~p~~~~~w~~y 394 (1167)
+++. +++..++.+|. ++|....+|..-..++...+. +++++.+++++|..+|.+..+|..-
T Consensus 43 ~e~s~eaL~~t~~~L~--------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 43 GELDESVLELTSQILG--------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp TCCSHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3444 67889999998 899999999998777665544 6789999999999999999999999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001064 395 VLCMEASG--SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD-IDGARAAYQLVHTETSPGLLEAIIKHANMERRL 471 (1167)
Q Consensus 395 a~~l~~~g--~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~-~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 471 (1167)
.-++...+ .+++++.++.++++.. |++..+|.....++...|. +++++..++++ ++.+|.|..+|..+..+..++
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~-I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL-ITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHh
Confidence 99998888 4899999999999988 8999999999999999998 69999999998 788999999999999888777
Q ss_pred --------------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHh
Q 001064 472 --------------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS----------RNAEKARQILVDSLD 527 (1167)
Q Consensus 472 --------------g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~----------g~~~~Ar~i~~kal~ 527 (1167)
+.+++++.++.++|...|++ ..+|..+..++.... +.++++++.++++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d------~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 45899999999999999754 557765544444322 358999999999999
Q ss_pred hcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCC
Q 001064 528 HVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNS 567 (1167)
Q Consensus 528 ~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~ 567 (1167)
..|++.-.+...+.+..........+.++.++++.+...|
T Consensus 267 ~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 267 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 9999987666666655443222334567888888877665
No 243
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=1.6e-12 Score=136.37 Aligned_cols=82 Identities=17% Similarity=0.354 Sum_probs=73.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEeccC
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r~ 1110 (1167)
.++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|.|.++.+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI-MTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEE-eecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 489999999999999999999999999999876 5677789999999999999999999999899999999999999987
Q ss_pred CCC
Q 001064 1111 NTG 1113 (1167)
Q Consensus 1111 ~~~ 1113 (1167)
+..
T Consensus 183 k~~ 185 (196)
T 1l3k_A 183 KQE 185 (196)
T ss_dssp ---
T ss_pred hhH
Confidence 654
No 244
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.36 E-value=3.5e-12 Score=131.22 Aligned_cols=166 Identities=11% Similarity=0.095 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
.+.+...+..+...|++++|+..|++++..+|.+.++|+.++.++...|++++|+..|++++... | ++.++...+.+.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLE 83 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHH
Confidence 34577788888899999999999999999999999999999999999999999999999999887 5 677766655443
Q ss_pred H-HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 434 E-QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 434 e-~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
. ..++..+|+..|+++ ++++|++..+|+.++.++...|++++|+..|++++...|.. ..+.++..++.++.. .
T Consensus 84 ~~~~~~~~~a~~~~~~a-l~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~a~~~l~~~~~~-~ 157 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQE-LAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA----QDGEVKKTFMDILSA-L 157 (176)
T ss_dssp HHHHHTSCHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT----TTTHHHHHHHHHHHH-H
T ss_pred HHhhcccchHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc----ChHHHHHHHHHHHHH-h
Confidence 2 223344578999998 78899999999999999999999999999999999998742 224578888888766 9
Q ss_pred CCHHHHHHHHHHHHh
Q 001064 513 RNAEKARQILVDSLD 527 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~ 527 (1167)
|+.++|...|+++|.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999985
No 245
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=1e-11 Score=139.11 Aligned_cols=219 Identities=11% Similarity=0.056 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----
Q 001064 314 YIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSV-TELENWHNYLDFIERDGDFNKVVKLYERCLIACANY----- 387 (1167)
Q Consensus 314 ~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~-~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~----- 387 (1167)
+......+|...+++++|+..|++++.- +..--++ .....|...+..+...|++++|+..|++++...+..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADY---QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444466788899999999999999871 0000122 235689999999999999999999999999987543
Q ss_pred -HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH-
Q 001064 388 -PEYWIRYVLCMEAS-GSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE- 459 (1167)
Q Consensus 388 -~~~w~~ya~~l~~~-g~~e~A~~vl~rA~~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~- 459 (1167)
...|..++.++... |++++|+..|++|+++.+... ..++..++.++.+.|++++|+..|+++ +++.|++..
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~ 194 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL-IKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHhcCCcc
Confidence 45899999999996 999999999999999884321 467888999999999999999999998 677776543
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhhcCCC
Q 001064 460 ------AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLH-LVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 460 ------~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~-~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+|+..+.++..+|++++|+..|++++.+.|....... ..++..++..+. ...+++++|...|++++.++|..
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE-SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH-HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 6788899999999999999999999998875321111 123334444322 12467999999999999888866
Q ss_pred HHHHH
Q 001064 533 KPLLE 537 (1167)
Q Consensus 533 ~~l~~ 537 (1167)
..++.
T Consensus 274 ~~~~~ 278 (292)
T 1qqe_A 274 ITILN 278 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 246
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=1.8e-11 Score=134.46 Aligned_cols=224 Identities=11% Similarity=0.033 Sum_probs=154.7
Q ss_pred HHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHH
Q 001064 329 DSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC--------ANYPEYWIRYVLCMEA 400 (1167)
Q Consensus 329 ~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~--------p~~~~~w~~ya~~l~~ 400 (1167)
.+++..+++.+. +.++.....|..++..+...|++++|+.+|++++... +....+|..++.++..
T Consensus 25 ~~al~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 25 KQALEDLEKTSG-------HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp HHHHHHHHHHHC-------SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 344555655553 1346678899999999999999999999999999884 4556789999999999
Q ss_pred cCCHHHHHHHHHHHHHhh-------hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc--------CCChHHHHHHHH
Q 001064 401 SGSMDLAHNALARATHVF-------VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTET--------SPGLLEAIIKHA 465 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~-------~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~--------~P~~~~~~~~~a 465 (1167)
.|++++|...|++++.+. .+....++..++.++...|++++|+.+|+++ +++ .|....++..++
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la 176 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA-LEIYATRLGPDDPNVAKTKNNLA 176 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999999874 2456788899999999999999999999998 555 677788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhhCCC---ccCchHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHhhcCCCHHHH
Q 001064 466 NMERRLGNLEDAFSLYEQAIAIEKGKE---HSQTLPMLYAQYSRFLHLVSR------NAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 466 ~~e~r~g~~e~A~~~~~kAl~~~~~~~---~~~~~~~l~~~~a~~~~~~~g------~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
.++.++|++++|+.+|++++...+... .......+|...+.+... .+ .+.++..+++......|.....+
T Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (283)
T 3edt_B 177 SCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES-KDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255 (283)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT-TCCCCC------------CCCCCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999999999999754210 001111233333333221 11 13333333333333334444455
Q ss_pred HHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 537 EALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 537 ~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
..++.+....++ .+.+..+|++++.
T Consensus 256 ~~la~~~~~~g~---~~~A~~~~~~al~ 280 (283)
T 3edt_B 256 RSLGALYRRQGK---LEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 555555555554 4446666666654
No 247
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=8e-13 Score=119.21 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=63.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.| ++ .++|||||+|.+.++|++++. .++.++|+.|+|.+++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~-----~~~g~afV~f~~~~~a~~~~~-~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFI-PK-----PFRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEEC-CS-----SCCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEE-ec-----CCCCEEEEEECCHHHHHHHhc-CCceeCCEEEEEEecC
Confidence 4599999999999999999999999999999764 22 268999999999999986533 2566689999999888
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 248
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=9.9e-11 Score=131.03 Aligned_cols=201 Identities=16% Similarity=0.148 Sum_probs=147.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHH
Q 001064 362 DFIERDGDFNKVVKLYERCLIACAN------YPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAA 430 (1167)
Q Consensus 362 ~~~e~~g~~~~a~~~yeral~~~p~------~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a 430 (1167)
..+...|++++|+..|++++.+.+. ...+|..++.++...|++++|+..|++|+.+.+.. ...++...+
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456789999999999999998532 24689999999999999999999999999988421 145788899
Q ss_pred HHHHHc-CCHHHHHHHHHHHhhhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc-CchHHHHH
Q 001064 431 RFKEQN-GDIDGARAAYQLVHTETSPGL------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS-QTLPMLYA 502 (1167)
Q Consensus 431 ~~~e~~-g~~~~A~~~~~~a~~~~~P~~------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~-~~~~~l~~ 502 (1167)
.++... |++++|+..|+++ +++.|++ ..+|..++.++.++|++++|+.+|++++...+..... .....++.
T Consensus 125 ~~~~~~lg~~~~A~~~~~~A-l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELA-GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 999996 9999999999998 6666643 4678999999999999999999999999998754221 12234677
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHH-----HHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLE-----ALIHFESIQSSPKQIDFLEQLVDKFLMS 565 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~-----~~~~~e~~~~~~~~~~~ar~l~eral~~ 565 (1167)
.++.++.. .|++++|+..|+++++++|....... .++... ..++.+..+.+...|++++..
T Consensus 204 ~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~-~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 204 KKGLCQLA-ATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV-NEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHGGGCC---------HHHHHHHHHHH-HTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHhccCCcc
Confidence 77877665 99999999999999999987654322 222111 123334455566666665443
No 249
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.34 E-value=4.1e-11 Score=128.57 Aligned_cols=172 Identities=9% Similarity=0.007 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChH---HHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPE---IHLF 428 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~---l~~~ 428 (1167)
..|...+..+.+.|++++|+..|++++...|.+ .++|+.++.++...|++++|+..|+++++.+ |+++. .++.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~ 83 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHH
Confidence 456777777788999999999999999998876 4799999999999999999999999999988 56553 6777
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHhhhcCCChHHHH-----------------HHHHHHHHHcCC
Q 001064 429 AARFKEQ------------------NGDIDGARAAYQLVHTETSPGLLEAI-----------------IKHANMERRLGN 473 (1167)
Q Consensus 429 ~a~~~e~------------------~g~~~~A~~~~~~a~~~~~P~~~~~~-----------------~~~a~~e~r~g~ 473 (1167)
.+.++.. .|++++|+..|+++ ++..|++..++ +..+.++.+.|+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL-VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHH-HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH-HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 7766654 56788888888887 67788876554 334445555566
Q ss_pred HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 474 LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 474 ~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+++|+..|+++++..|+. +..+.++..++..+.. .|++++|++.|++++...|++
T Consensus 163 ~~~A~~~~~~~l~~~p~~---~~~~~a~~~l~~~~~~-~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDT---QATRDALPLMENAYRQ-MQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHCcCC---CccHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhhCCCc
Confidence 666666666666655432 1223445555555444 566666666666555555543
No 250
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=5e-10 Score=130.17 Aligned_cols=239 Identities=11% Similarity=0.016 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-------HH
Q 001064 317 VREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY-------PE 389 (1167)
Q Consensus 317 ~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~-------~~ 389 (1167)
.++..+...+++++|+..|+++++. ..-.+-++.....+..++.++...|+++.|+..|++++...+.. ..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKE--LPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHH--HhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 3455677889999999999999872 11111234556788888999999999999999999999875432 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-----cCCChHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVHTE-----TSPGLLE 459 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~-----~~P~~~~ 459 (1167)
++..+|.++...|++++|...|++++.+... ....++..+|.++...|++++|+..|+++ ++ .+|....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA-AKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhCChhHHH
Confidence 7889999999999999999999999997631 12457778899999999999999999998 55 6788888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhcCCCHHHH
Q 001064 460 AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRN---AEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 460 ~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~---~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
++..++.++.++|++++|+.+|++++........ +.....+..++.+ +...++ +++|..++++. ...+....++
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l~~l-y~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH-KFYKELFLFLQAV-YKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC-SCHHHHHHHHHHH-HSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 9999999999999999999999999998753222 2222233333333 333666 78888888763 2233334555
Q ss_pred HHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 537 EALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 537 ~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
..++.+-...++ .+.+...|++++.
T Consensus 340 ~~la~~y~~~g~---~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCH---FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence 566666666665 5567777887765
No 251
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.34 E-value=2.4e-12 Score=122.59 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=70.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++|+++|+++|++||.|.+|.+. + ++.++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~-~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG-N---TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE-C---STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-e---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 46899999999999999999999999999998753 2 245689999999999999999985 999999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 764
No 252
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=1.5e-12 Score=122.94 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=67.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++++++|+++|++||.|.+|.| . +++|||||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i--~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL--P-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC--C-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE--e-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5689999999999999999999999999998654 2 2578999999999999999986 899999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+..
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 764
No 253
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=129.67 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=71.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeE----eeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV----FVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i----~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
++++|||+|||+++|+++|+++|++||.|..+.+ .++...+|+++|||||+|.+.++|.+||.. +|..|+|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4589999999999999999999999999987521 122235788999999999999999999986 99999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|+++++..
T Consensus 124 V~~a~~~~ 131 (143)
T 3egn_A 124 VQFARSAR 131 (143)
T ss_dssp EEECCCSC
T ss_pred EEECCCCC
Confidence 99998754
No 254
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.5e-12 Score=120.09 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=66.8
Q ss_pred CccEEEE--ecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee-----eCc
Q 001064 1030 EVKSVYV--RNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL-----AGR 1101 (1167)
Q Consensus 1030 ~~~~l~V--~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i-----~g~ 1101 (1167)
+.++||| |||++++|+++|+++|++||.|.+|.| .. +||||||+|.+.++|++|++. ||..| .|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i--~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC--CT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE--eC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 5689999 779999999999999999999998653 21 378999999999999999986 89988 789
Q ss_pred EeEEEeccCCCC
Q 001064 1102 QVYIEERRPNTG 1113 (1167)
Q Consensus 1102 ~l~V~~~r~~~~ 1113 (1167)
.|.|.+++..+-
T Consensus 97 ~l~v~~a~~~p~ 108 (114)
T 2cq2_A 97 TLYLNFVEKVQW 108 (114)
T ss_dssp ECEEEEESCCCC
T ss_pred EEEEEecccCcc
Confidence 999999886543
No 255
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.32 E-value=5.1e-12 Score=125.43 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=68.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~ 1106 (1167)
...+|||+||++.+|+++|+++|++||.|++|.|. .+ +++|||||+|.+.++|.+|++. +|..|.| +.|+|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~--~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF--TK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEE--ES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEE--eC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 35789999999999999999999999999998652 22 2578999999999999999987 8999965 999999
Q ss_pred eccCCCC
Q 001064 1107 ERRPNTG 1113 (1167)
Q Consensus 1107 ~~r~~~~ 1113 (1167)
+++++.-
T Consensus 120 ~Ak~~~l 126 (164)
T 1sjr_A 120 FSKLTSL 126 (164)
T ss_dssp ECSSSSC
T ss_pred EecCCcc
Confidence 9998643
No 256
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=4.3e-12 Score=116.50 Aligned_cols=78 Identities=10% Similarity=0.201 Sum_probs=68.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++++++|+++|++||.|.+|+..+.++.+| .|||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 468999999999999999999999999999985335555443 499999999999999985 999999999999999
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 876
No 257
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.32 E-value=3.6e-12 Score=127.58 Aligned_cols=77 Identities=31% Similarity=0.408 Sum_probs=69.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++|+++|+++|++||.|.+|.| +++ ++|||||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV-ARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEE-CSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE-eeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 5699999999999999999999999999999875 322 579999999999999999985 999999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
++++
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 258
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.31 E-value=4.5e-12 Score=132.94 Aligned_cols=82 Identities=18% Similarity=0.366 Sum_probs=75.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||.++|+++|+++|++||.|.+|.| ++++.+|+++|||||+|.+.++|.+||..++..|+|+.|.|..+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVV-MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 35799999999999999999999999999999875 66778899999999999999999999999999999999999987
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
..+
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 654
No 259
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.31 E-value=4.8e-12 Score=129.86 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=73.4
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.++++|||+|||+++++++|+++|++||.|+.|.| +.++ +|+++|||||+|.+.++|.+||+. ++..|+|+.|+|++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i-~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV-DYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEE-CCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35799999999999999999999999999999875 4455 889999999999999999999986 89999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8653
No 260
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.31 E-value=4.9e-12 Score=134.66 Aligned_cols=81 Identities=25% Similarity=0.325 Sum_probs=74.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||||||+++|+++|+++|++||.|.+|+| ++++.+|+++|||||+|.+.++|.+||.. ++..+.|+.|+|..+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i-~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE-ecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4589999999999999999999999999999986 67888999999999999999999999987 899999999999887
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 261
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.31 E-value=3.8e-11 Score=147.85 Aligned_cols=162 Identities=12% Similarity=0.057 Sum_probs=132.8
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAY 446 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~ 446 (1167)
.|++++|+.+|++++..+|.+.++|+.++..+...|++++|...|++++++. |++..+|+.++.++...|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999987 889999999999999999999999999
Q ss_pred HHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh---CCHHHHHHHHH
Q 001064 447 QLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS---RNAEKARQILV 523 (1167)
Q Consensus 447 ~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~---g~~~~Ar~i~~ 523 (1167)
+++ ++++|++..+|..++.++.++|++++|+.+|+++++..|.. +.++..++.++.. . |++++|...|+
T Consensus 81 ~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~-~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 81 QQA-SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRR-LCDWRALDVLSAQVR 152 (568)
T ss_dssp HHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCCTTHHHHHHHHH
T ss_pred HHH-HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-hhccccHHHHHHHHH
Confidence 998 78899999999999999999999999999999999998642 6788889988776 8 99999999999
Q ss_pred HHHhhcCCCHHHHH
Q 001064 524 DSLDHVQLSKPLLE 537 (1167)
Q Consensus 524 kal~~~p~~~~l~~ 537 (1167)
++++..|.+...+.
T Consensus 153 ~al~~~p~~~~~~~ 166 (568)
T 2vsy_A 153 AAVAQGVGAVEPFA 166 (568)
T ss_dssp HHHHHTCCCSCHHH
T ss_pred HHHhcCCcccChHH
Confidence 99999998765553
No 262
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=109.20 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=63.7
Q ss_pred ccE-EEEecCCCCCCHHH----HHHHHhcC-CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEe
Q 001064 1031 VKS-VYVRNLPSTVTAFE----IEEEFQNF-GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1103 (1167)
Q Consensus 1031 ~~~-l~V~nlp~~~t~~~----l~~~F~~~-G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l 1103 (1167)
..+ |||+|||+.+++++ |+++|++| |+|.+| +| |||||.|.+.++|.+|++. +|..|.||+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 344 99999999999988 55899999 599874 23 9999999999999999976 8999999999
Q ss_pred EEEeccCCCCC
Q 001064 1104 YIEERRPNTGS 1114 (1167)
Q Consensus 1104 ~V~~~r~~~~~ 1114 (1167)
+|.+++.++.-
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999987543
No 263
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=6.9e-11 Score=129.81 Aligned_cols=232 Identities=12% Similarity=0.050 Sum_probs=171.7
Q ss_pred HcCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------hccChHHHHHHH
Q 001064 366 RDGDFNKVVKLYERCLIAC--------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVF-------VKRLPEIHLFAA 430 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~--------p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~-------~p~~~~l~~~~a 430 (1167)
..|++++|+.+|++++... +....+|..++.++...|++++|...|++++.+. .+....++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4678888888888888853 4456799999999999999999999999999874 245677889999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC--CccCchHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTET--------SPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK--EHSQTLPML 500 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~--------~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~--~~~~~~~~l 500 (1167)
.++...|++++|+..|+++ +++ .|....+|..++.++..+|++++|+.+|++++...... ...+....+
T Consensus 93 ~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRA-LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHH-HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999998 444 47778889999999999999999999999999983210 012334567
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh---------cCCCHHHHHHHHHhHhhCCChhH---HHHHHHHHHHHhhcCCC
Q 001064 501 YAQYSRFLHLVSRNAEKARQILVDSLDH---------VQLSKPLLEALIHFESIQSSPKQ---IDFLEQLVDKFLMSNSD 568 (1167)
Q Consensus 501 ~~~~a~~~~~~~g~~~~Ar~i~~kal~~---------~p~~~~l~~~~~~~e~~~~~~~~---~~~ar~l~eral~~~~~ 568 (1167)
+..++.++.. .|++++|+.+|+++++. .+....+|.....+......... ...+..+++.+..
T Consensus 172 ~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 246 (283)
T 3edt_B 172 KNNLASCYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---- 246 (283)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC----
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC----
Confidence 8889988776 99999999999999986 33444555555555544332221 1112222221111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhh
Q 001064 569 SPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARL 608 (1167)
Q Consensus 569 ~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~ 608 (1167)
.......++..........|+.+.+.+++++..+.
T Consensus 247 -----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 -----DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11234567888888889999999999999888764
No 264
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.30 E-value=4.6e-11 Score=126.49 Aligned_cols=162 Identities=10% Similarity=0.068 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHH----------------HHHHHHHcCChHHHHHHHHHHH
Q 001064 318 REEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHN----------------YLDFIERDGDFNKVVKLYERCL 381 (1167)
Q Consensus 318 ~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~----------------y~~~~e~~g~~~~a~~~yeral 381 (1167)
+...+...+++++|+..|+++++ ++|.+...|.. ++..+...|++++|+..|++++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--------LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--------HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--------hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566788999999999999998 89999999999 9999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCC--HHHHHHHHHHHhhhcCCChHH
Q 001064 382 IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGD--IDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 382 ~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~--~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
..+|.+.++|+.++.++...|++++|+..|++++++. |+++.+|+.++.++...|+ ...+...|.++ +...| ...
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~ 158 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL-SSPTK-MQY 158 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCH-HHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCCCc-hhH
Confidence 9999999999999999999999999999999999988 8999999999988866553 45566777775 33222 223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 460 AIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 460 ~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
.|+..+......|++++|+..|++|+++.|+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 5666777777889999999999999999874
No 265
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.29 E-value=3.2e-11 Score=134.71 Aligned_cols=170 Identities=11% Similarity=-0.034 Sum_probs=149.7
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 430 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a 430 (1167)
|.+.+.+...+..+...|++++|+.+|++++..+|.+.++|+.++.++...|++++|+.+|++++... |+....++..+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-QDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-CSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-cchHHHHHHHH
Confidence 34567788888888999999999999999999999999999999999999999999999999999887 55555555556
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
..+...++.++|...|+++ ++++|++..+++.++.++...|++++|+..|++++...|+. ....++..++.++..
T Consensus 193 ~~l~~~~~~~~a~~~l~~a-l~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~----~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQ-VAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA----ADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----GGGHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHH-HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----ccchHHHHHHHHHHH
Confidence 6566778888999999998 78899999999999999999999999999999999998742 225688889988665
Q ss_pred HhCCHHHHHHHHHHHHh
Q 001064 511 VSRNAEKARQILVDSLD 527 (1167)
Q Consensus 511 ~~g~~~~Ar~i~~kal~ 527 (1167)
.|+.++|...|+++|.
T Consensus 268 -~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 -LGTGDALASXYRRQLY 283 (287)
T ss_dssp -HCTTCHHHHHHHHHHH
T ss_pred -cCCCCcHHHHHHHHHH
Confidence 9999999999999985
No 266
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.29 E-value=1.5e-11 Score=117.63 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=67.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccE-EEEEECCHHHHHHHHHh-CCCeeeC--cEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCY-AFVEFEDISGVQNAIQA-SPIQLAG--RQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~-afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V 1105 (1167)
...+|||+||++.+|+++|+++|++||.|.+|.|. . +.+|| |||+|.+.++|.+|++. +|..|.| +.|+|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~-~-----~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-T-----KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEE-E-----ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEE-c-----CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34789999999999999999999999999998653 2 13578 99999999999999987 8999998 88999
Q ss_pred EeccCCC
Q 001064 1106 EERRPNT 1112 (1167)
Q Consensus 1106 ~~~r~~~ 1112 (1167)
++++++.
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9998764
No 267
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.29 E-value=3.7e-12 Score=129.84 Aligned_cols=80 Identities=20% Similarity=0.372 Sum_probs=74.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEeccC
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r~ 1110 (1167)
.++|||+|||.++|+++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++.++..|+|+.|+|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQL-MLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEEC-CCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEE-EEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 479999999999999999999999999999875 5567789999999999999999999999889999999999999987
Q ss_pred C
Q 001064 1111 N 1111 (1167)
Q Consensus 1111 ~ 1111 (1167)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 268
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.28 E-value=5.9e-12 Score=113.46 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=67.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||+++++++|+++|++| .|.++.+ . +++|||||+|.+.++|.+|++. +|..++|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i--~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV--D-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE--E-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE--e-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 35899999999999999999999999 9999765 2 5789999999999999999986 899999999999998
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 269
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.28 E-value=1.7e-09 Score=121.56 Aligned_cols=228 Identities=6% Similarity=-0.060 Sum_probs=180.1
Q ss_pred HcCChH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 366 RDGDFN-KVVKLYERCLIACANYPEYWIRYVLCMEASGS----------MDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 366 ~~g~~~-~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~----------~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
+.|+++ +|+.+++++|..+|.+..+|..-..++...+. +++++..++.++..+ |++..+|.....++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 455554 89999999999999999999999998877655 678999999999988 899999999999999
Q ss_pred HcC--CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH
Q 001064 435 QNG--DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN-LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV 511 (1167)
Q Consensus 435 ~~g--~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~-~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~ 511 (1167)
..+ ++++++.+++++ ++++|.|..+|..+..+....|. +++++..++++|..+|.+ ...|.+.+.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~-l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N------~SAW~~R~~ll~~l 192 (331)
T 3dss_A 120 RLPEPNWARELELCARF-LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSSCCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHh
Confidence 988 489999999998 78999999999999999999998 699999999999998654 56887777776652
Q ss_pred h-------------CCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCC--Ch-------hHHHHHHHHHHHHhhcCCCC
Q 001064 512 S-------------RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQS--SP-------KQIDFLEQLVDKFLMSNSDS 569 (1167)
Q Consensus 512 ~-------------g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~--~~-------~~~~~ar~l~eral~~~~~~ 569 (1167)
. +.++++.+.+.+++..+|++...|. |..+.+... .. +.++....++.+++...|++
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~-Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF-YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH-HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 1 4589999999999999999999995 333333222 11 23466677788888888765
Q ss_pred CCCCCHHHHHHHHHHHHH---HHHhhCCHHHHHHHHHHHHhhhCC
Q 001064 570 PSTANAAEREELSCVFLE---FLGLFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 570 ~~~l~~~~~~~i~~~~l~---fe~~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
. . ++...+. .....|..+.+...+.++.++-|-
T Consensus 272 ~--------w-~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 272 K--------W-CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp H--------H-HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred c--------h-HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 2 1 1111121 222356777888888898888774
No 270
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.28 E-value=6.4e-11 Score=114.61 Aligned_cols=117 Identities=12% Similarity=0.067 Sum_probs=108.5
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
+||...+.|+..+..+.+.|++++|+..|+++|..+|.++.+|+.++.++...|++++|+..|++++++. |++..+|+.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999987 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
+|.++...|++++|+..|+++ ++++|++.+++..++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDA-LQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH-HHHCcCCHHHHHHHHHh
Confidence 999999999999999999998 78999999888777654
No 271
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.6e-11 Score=124.75 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=73.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHV-MWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEE-EECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEE-EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 4689999999999999999999999999999875 56777899999999999999999999985 999999999999997
Q ss_pred c
Q 001064 1109 R 1109 (1167)
Q Consensus 1109 r 1109 (1167)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 272
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=7.1e-12 Score=118.96 Aligned_cols=77 Identities=25% Similarity=0.370 Sum_probs=65.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCC---cccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD---VVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~ 1106 (1167)
..++|||+|||+++|+++|+++|++||.|. +.+ +.++.+ |+++|||||+|.+.++|++||+.. ..++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~-~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDW-PHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EEC-TTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEE-eecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 458999999999999999999999999998 543 555555 799999999999999999999874 35788888776
Q ss_pred ecc
Q 001064 1107 ERR 1109 (1167)
Q Consensus 1107 ~~r 1109 (1167)
..+
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 273
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.27 E-value=1e-11 Score=126.73 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=74.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. +|..++|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i-~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRI-MRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC-CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 3589999999999999999999999999999875 56777899999999999999999999975 999999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
++..
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 7654
No 274
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.27 E-value=1.3e-11 Score=125.58 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=74.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. +|..++|+.|+|.+++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~-~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL-VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEE-EeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 489999999999999999999999999999875 56777899999999999999999999985 9999999999999987
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 275
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=1.9e-09 Score=124.74 Aligned_cols=285 Identities=9% Similarity=0.012 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH--
Q 001064 313 KYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT--ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP-- 388 (1167)
Q Consensus 313 ~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~--~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~-- 388 (1167)
.....+..++...+++++++..+++++.. .|.+.. ....+..++..+...|++++|+.+|++++...+...
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEE-----LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 44555666788889999999999999873 122211 223556667777889999999999999998755332
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-
Q 001064 389 ----EYWIRYVLCMEASGSMDLAHNALARATHVFVK-------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG- 456 (1167)
Q Consensus 389 ----~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p-------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~- 456 (1167)
..+..++.++...|++++|...|++++.+... ....++..++.++...|++++|+..|+++ +++.+.
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~ 168 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG-IEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTTTS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHhhcc
Confidence 23567788888899999999999999997631 23456677889999999999999999998 555543
Q ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 457 ----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLY--AQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 457 ----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~--~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
....+..++.++...|++++|+.++++++...+.... ....... ...+.++. ..|++++|+.++++++...+
T Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY-HSDWISNANKVRVIYWQ-MTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHSCCCCC
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHH-HCCCHHHHHHHHHhCCCCCC
Confidence 3467888899999999999999999999988643211 1111111 12233333 48999999999999998776
Q ss_pred CC----HHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 001064 531 LS----KPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHA 606 (1167)
Q Consensus 531 ~~----~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~ 606 (1167)
.+ ...+..++.+....+. .+.+..++++++....... ......+++..........|+.+.....+++..
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGE---FEPAEIVLEELNENARSLR---LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCc---chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 43 2234566666666666 4556677777655422111 122334466666777778899999999999988
Q ss_pred hhhCC
Q 001064 607 RLFLP 611 (1167)
Q Consensus 607 ~~~~~ 611 (1167)
++...
T Consensus 321 ~~~~~ 325 (373)
T 1hz4_A 321 KLANR 325 (373)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 87653
No 276
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.26 E-value=1.5e-11 Score=131.01 Aligned_cols=83 Identities=20% Similarity=0.401 Sum_probs=76.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++|+++|+++|++||.|..|.| ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL-ARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE-EecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3589999999999999999999999999999875 56777899999999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
++++.
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87644
No 277
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.26 E-value=4.6e-11 Score=137.83 Aligned_cols=311 Identities=11% Similarity=0.095 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFE 192 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fe 192 (1167)
+++++|+.++++. +....|..+|..+.+.+++++|++.|.++ .+...|..-+.-.. ..|++++|+..|+
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae-~~g~~EeAi~yl~ 85 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN-TSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHH-hCCCHHHHHHHHH
Confidence 5678888888887 33468888888888888888888888775 23445555555554 5788888888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhh
Q 001064 193 RGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVA 272 (1167)
Q Consensus 193 ral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~ 272 (1167)
.+++..+. ..+...++....+.|++.++..+|+. | . ...+.
T Consensus 86 ~ark~~~~----~~i~~~Li~~Y~Klg~l~e~e~f~~~----p-n-~~a~~----------------------------- 126 (449)
T 1b89_A 86 MARKKARE----SYVETELIFALAKTNRLAELEEFING----P-N-NAHIQ----------------------------- 126 (449)
T ss_dssp ---------------------------CHHHHTTTTTC----C-------------------------------------
T ss_pred HHHHhCcc----chhHHHHHHHHHHhCCHHHHHHHHcC----C-c-HHHHH-----------------------------
Confidence 87774222 23444444455557777777555431 1 1 11111
Q ss_pred hCCCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChh
Q 001064 273 AAPSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVT 352 (1167)
Q Consensus 273 ~~~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~ 352 (1167)
..+..+...+.+++|+..|..+
T Consensus 127 --------------------------------------------~IGd~~~~~g~yeeA~~~Y~~a-------------- 148 (449)
T 1b89_A 127 --------------------------------------------QVGDRCYDEKMYDAAKLLYNNV-------------- 148 (449)
T ss_dssp ------------------------------------------------------CTTTHHHHHHHT--------------
T ss_pred --------------------------------------------HHHHHHHHcCCHHHHHHHHHHh--------------
Confidence 0122345567777777778754
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
..|..+++.+.+.|+++.|+.+|+++ .++..|..........|+++.|..+... +.. .++-......+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~----~ad~l~~lv~~ 216 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV----HADELEELINY 216 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT----CHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh----CHhhHHHHHHH
Confidence 35899999999999999999999998 4688999988888888999988665543 222 33334456677
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL--GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~--g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
+++.|.+++|..+|+++ +.+++.+..+|..++.++.+- +++.+.++.|...+.+.+-- .......+|..+..++..
T Consensus 217 Yek~G~~eEai~lLe~a-L~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~-~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 217 YQDRGYFEELITMLEAA-LGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL-RAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHHTTCHHHHHHHHHHH-TTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHH-HHHHTTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHHh
Confidence 88899999999999998 688888888888887776543 56666666666666655400 000113477777666444
Q ss_pred HhCCHHHHHHHHHHHHhh------------cCCCHHHHHHHHHhHhhC
Q 001064 511 VSRNAEKARQILVDSLDH------------VQLSKPLLEALIHFESIQ 546 (1167)
Q Consensus 511 ~~g~~~~Ar~i~~kal~~------------~p~~~~l~~~~~~~e~~~ 546 (1167)
.++++.|....-..... .+.+.+++-..+.|-+..
T Consensus 295 -~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~ 341 (449)
T 1b89_A 295 -YEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 341 (449)
T ss_dssp -TTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred -hchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence 88899888876665443 455667777777776654
No 278
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.26 E-value=5.5e-11 Score=137.21 Aligned_cols=386 Identities=9% Similarity=0.018 Sum_probs=158.0
Q ss_pred ccccCCcCCcccccCCCCcccCCCCCCCccCCCCcccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhh
Q 001064 35 AAGYNSMNGNVVNEAGNATSTENGTSLGIESGAAAGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDN 114 (1167)
Q Consensus 35 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~ 114 (1167)
+..+-...|+.+.|.+-+.++.+ + . .-...+..+.+.+++++|++.|.+ ..|...|...+..++.. |+
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~~~-~--~--vWs~La~A~l~~g~~~eAIdsfik-----a~D~~~y~~V~~~ae~~--g~ 76 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERCNE-P--A--VWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTS--GN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhCCC-h--H--HHHHHHHHHHHcCCHHHHHHHHHc-----CCCHHHHHHHHHHHHhC--CC
Confidence 33444455666666665555511 1 1 122233333333666666666643 24555666666666553 56
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 001064 115 IVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERG 194 (1167)
Q Consensus 115 ~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~fera 194 (1167)
+++|+++++.+++.-++ ......++..+.+.|++++++++|+. | +...|...+..+. ..|.+++|+..|.++
T Consensus 77 ~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~-~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 77 WEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCY-DEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTTC-----C------------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 66666666666654333 45555566666666666666655531 2 3346666666665 456666666666655
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHhhhC
Q 001064 195 LAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEFAASRPLSELRTAEEVDAAAVAVAAA 274 (1167)
Q Consensus 195 l~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~ 274 (1167)
.-|..++..+..+|+++.|...|+++. +. ..|
T Consensus 149 -----------~n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~-~~W------------------------------- 180 (449)
T 1b89_A 149 -----------SNFGRLASTLVHLGEYQAAVDGARKAN-----ST-RTW------------------------------- 180 (449)
T ss_dssp -----------TCHHHHHHHHHTTTCHHHHHHHHHHHT-----CH-HHH-------------------------------
T ss_pred -----------hhHHHHHHHHHHhccHHHHHHHHHHcC-----Cc-hhH-------------------------------
Confidence 135666666666666666666666661 11 111
Q ss_pred CCccchhhhccccccCCccccccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhH
Q 001064 275 PSETGAEVKANEEEVQPDATEQTSKPVSAGLTEAEELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTEL 354 (1167)
Q Consensus 275 ~~e~~~~~~~~e~~~~p~~~e~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~ 354 (1167)
...+. .....++++.|...... |. .++.++
T Consensus 181 -------------------------------------k~v~~----aCv~~~ef~lA~~~~l~-L~--------~~ad~l 210 (449)
T 1b89_A 181 -------------------------------------KEVCF----ACVDGKEFRLAQMCGLH-IV--------VHADEL 210 (449)
T ss_dssp -------------------------------------HHHHH----HHHHTTCHHHHHHTTTT-TT--------TCHHHH
T ss_pred -------------------------------------HHHHH----HHHHcCcHHHHHHHHHH-HH--------hCHhhH
Confidence 11111 12233444444333332 11 455443
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhhhc-----cChHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA--SGSMDLAHNALARATHVFVK-----RLPEIHL 427 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~--~g~~e~A~~vl~rA~~~~~p-----~~~~l~~ 427 (1167)
. ..+.++++.|.+++++.+++++|...+.+..+|..++.++.+ .+++.+.++.|...+.+. | ....+|.
T Consensus 211 ~---~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~-k~~~~~~~~~~w~ 286 (449)
T 1b89_A 211 E---ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP-KVLRAAEQAHLWA 286 (449)
T ss_dssp H---HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHH-HHHHHHHTTTCHH
T ss_pred H---HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 2 577788888999999999999998888888899988887765 345666777776666543 5 5778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh-----------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 428 FAARFKEQNGDIDGARAAYQLVHT-----------ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~~~~a~~-----------~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
.+..++...++++.|...+-.-.. -..+.+.+++++.+.|+... .......+..++.-. .+
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~~l~~ll~~l~~~------ld 358 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPR------LD 358 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGG------CC
T ss_pred HHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhc------cC
Confidence 888888899999988765443200 01456778888888887632 334444455454211 01
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHH
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVD 560 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~e 560 (1167)
.. ....+..+ .|++.-.+.+++.... -++..+-+++-.+...-.+ .+.+|...+
T Consensus 359 ~~----r~v~~~~~-~~~l~l~~~yl~~v~~--~n~~~vnealn~l~ieeed---~~~lr~si~ 412 (449)
T 1b89_A 359 HT----RAVNYFSK-VKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEED---YQALRTSID 412 (449)
T ss_dssp HH----HHHHHHHH-TTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred cH----HHHHHHHH-cCCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhh---HHHHHHHHH
Confidence 11 12222233 6667766666654432 3456666666666555433 455565544
No 279
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.26 E-value=7.6e-11 Score=117.91 Aligned_cols=125 Identities=10% Similarity=-0.006 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 001064 324 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGS 403 (1167)
Q Consensus 324 ~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~ 403 (1167)
...++..+-..|++++. ++|.+.+.|..++..+.+.|++++|+..|++++..+|.++.+|+.++.++...|+
T Consensus 14 ~l~~~~~~~~~l~~al~--------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 14 AVIDAINSGATLKDINA--------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHHHTSCCTGGGCC--------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCHHHHhC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc
Confidence 33444445556788887 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001064 404 MDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 404 ~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 458 (1167)
+++|+..|++++.+. |+++.+|+.++.++...|++++|+..|+++ +++.|+..
T Consensus 86 ~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a-l~l~~~~~ 138 (151)
T 3gyz_A 86 FQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELV-IQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCCCHH
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCHH
Confidence 999999999999988 889999999999999999999999999998 78888764
No 280
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=5.2e-11 Score=113.42 Aligned_cols=75 Identities=23% Similarity=0.230 Sum_probs=65.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccE-EEEEECCHHHHHHHHHh-CCCeeeC--cEeEEE
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCY-AFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1106 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~-afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~ 1106 (1167)
...|||+||++.+|+++|+++|++||.|++|.| +. + .|| |||+|.+.++|..|++. +|..|.| +.|+|+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i-~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVI-FK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEE-EE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEE-Ee-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 356789999999999999999999999999875 32 2 276 99999999999999987 8999988 589999
Q ss_pred eccCCC
Q 001064 1107 ERRPNT 1112 (1167)
Q Consensus 1107 ~~r~~~ 1112 (1167)
+++++.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998764
No 281
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.25 E-value=1.7e-11 Score=122.64 Aligned_cols=113 Identities=10% Similarity=-0.019 Sum_probs=105.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccC
Q 001064 85 RLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVT 164 (1167)
Q Consensus 85 ~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P 164 (1167)
.|+++++.+|.+.++|+.++..+... |++++|...|++++..+|.+..+|..++.++...|++++|+..|++++.+.|
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNK--GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 35567778999999999999999874 8999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCC
Q 001064 165 YSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGT 200 (1167)
Q Consensus 165 ~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~ 200 (1167)
.++..|+.++..+. ..|++++|+..|++++...+.
T Consensus 102 ~~~~~~~~lg~~~~-~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 102 NDYTPVFHTGQCQL-RLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp SCCHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC
T ss_pred CCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999998 789999999999999997765
No 282
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.24 E-value=1.6e-11 Score=128.01 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=71.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
..++|||+|||+++|+++|+++|++||.|.+|+| .++. +|+++|||||+|++.++|.+||...+..|+|+.|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i-~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM-RRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE-EECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE-EECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 4689999999999999999999999999999875 3343 5889999999999999999999987789999999999876
Q ss_pred C
Q 001064 1110 P 1110 (1167)
Q Consensus 1110 ~ 1110 (1167)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 5
No 283
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=5.3e-11 Score=122.26 Aligned_cols=158 Identities=11% Similarity=-0.040 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001064 319 EEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCM 398 (1167)
Q Consensus 319 ~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l 398 (1167)
...+...+++++|+..|+++++ ++|.+...|..++.++...|++++|+..|++++...| ++.++...+.+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSD--------ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCH--------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 4567788999999999999998 7899999999999999999999999999999999999 887766655432
Q ss_pred -HHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh--HHHHHHHHHHHHHcCCHH
Q 001064 399 -EASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL--LEAIIKHANMERRLGNLE 475 (1167)
Q Consensus 399 -~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~--~~~~~~~a~~e~r~g~~e 475 (1167)
...+....|+..|++++++. |+++.+|+.++.++...|++++|+..|+++ ++++|+. ..+|..++.++..+|+.+
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNI-LKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH-HHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 22233445789999999987 899999999999999999999999999998 7889876 569999999999999999
Q ss_pred HHHHHHHHHHHh
Q 001064 476 DAFSLYEQAIAI 487 (1167)
Q Consensus 476 ~A~~~~~kAl~~ 487 (1167)
+|...|+++|..
T Consensus 162 ~A~~~y~~al~~ 173 (176)
T 2r5s_A 162 AIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999999999864
No 284
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.24 E-value=1.4e-11 Score=110.64 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=63.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcC----C-------CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCee
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNF----G-------RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQL 1098 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i 1098 (1167)
+.++|||+|||+++++++|+++|++| | .|.++.+ . +.+|||||+|.+.++|.+|+..+|..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~------~~kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-N------QDKNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-C------SSSSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-c------CCCcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 56999999999999999999999999 8 8888654 2 237999999999999999995599999
Q ss_pred eCcEeEEEe
Q 001064 1099 AGRQVYIEE 1107 (1167)
Q Consensus 1099 ~g~~l~V~~ 1107 (1167)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 285
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=1.8e-10 Score=128.65 Aligned_cols=169 Identities=13% Similarity=0.002 Sum_probs=146.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 384 CANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 384 ~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
.|...+.++..+..+...|++++|...|++++... |+++.+++.++.++.+.|++++|+.+|+++ ...+|+....++.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~-~~~~p~~~~~~~~ 190 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTI-PLQDQDTRYQGLV 190 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTS-CGGGCSHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhC-chhhcchHHHHHH
Confidence 38888999999999999999999999999999988 899999999999999999999999999998 7889987777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC--HHHHHHHHH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS--KPLLEALIH 541 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~--~~l~~~~~~ 541 (1167)
....+.+.++.++|+..|++++...|++ +.++..++.++.. .|++++|+..|+++++.+|++ ...+..++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPED------AALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHH-cccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 7666777888999999999999998743 7799999999876 999999999999999999998 788888888
Q ss_pred hHhhCCChhHHHHHHHHHHHHhh
Q 001064 542 FESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 542 ~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
+....+..+ .+...|.++|.
T Consensus 264 ~~~~~g~~~---~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGD---ALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTC---HHHHHHHHHHH
T ss_pred HHHHcCCCC---cHHHHHHHHHH
Confidence 877776533 34555565544
No 286
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.23 E-value=4.6e-11 Score=119.15 Aligned_cols=117 Identities=8% Similarity=0.019 Sum_probs=109.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001064 84 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 163 (1167)
Q Consensus 84 ~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 163 (1167)
..|+++++.+|.+.++|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+..|++++...
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQ--SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45788999999999999999999987 4899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC
Q 001064 164 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYL 203 (1167)
Q Consensus 164 P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~ 203 (1167)
|.+...|+.++..+. ..|++++|+..|++++...|.++.
T Consensus 86 p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 86 IXEPRFPFHAAECLL-QXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCchHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999999998 789999999999999998877643
No 287
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.23 E-value=2.6e-11 Score=127.39 Aligned_cols=83 Identities=20% Similarity=0.419 Sum_probs=76.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEE-EECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEE-eecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4699999999999999999999999999999875 55667899999999999999999999986 999999999999999
Q ss_pred cCCCC
Q 001064 1109 RPNTG 1113 (1167)
Q Consensus 1109 r~~~~ 1113 (1167)
+++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 288
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.23 E-value=2.4e-11 Score=116.27 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
++++|||+|+ ++|+++|+++|++||.|.+|.+. +++|||||+|.+.++|.+||.. +|..|+|+.|+|+++
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 5699999996 69999999999999999997652 4789999999999999999976 999999999999999
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+++.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8754
No 289
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.22 E-value=4.3e-11 Score=114.10 Aligned_cols=109 Identities=20% Similarity=0.279 Sum_probs=93.5
Q ss_pred CChhhHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDF------NKVVKLYERCLIACAN--------YPEYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~------~~a~~~yeral~~~p~--------~~~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
..|.+++.|..|++.+++.|+. ++.+.+|+||+...|- |..+|++||.+. ..++.++|+.+|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence 4667799999999999999999 9999999999998763 456999999875 458999999999999
Q ss_pred HHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHH
Q 001064 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEA 460 (1167)
Q Consensus 415 ~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~ 460 (1167)
+.++ +++..+|+++|.|+.++|+++.|++++.++ +.+.|...++
T Consensus 87 ~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~A-iG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKA-VERGAVPLEM 130 (161)
T ss_dssp HHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCBCHHH
T ss_pred HHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHH-hccCCCcHHH
Confidence 9985 788999999999999999999999999998 6677765443
No 290
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.21 E-value=7.9e-12 Score=133.03 Aligned_cols=78 Identities=24% Similarity=0.451 Sum_probs=70.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||+++|+++|+++|++||.|.+|+| +++. +.++|||||+|.+.++|.+||+. ||..|+|+.|+|++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i-~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV-VCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEe-eccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 478999999999999999999999999999886 4443 44799999999999999999976 9999999999999987
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 65
No 291
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.21 E-value=1.5e-10 Score=142.46 Aligned_cols=156 Identities=21% Similarity=0.158 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMD 405 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e 405 (1167)
+++++|+..|+++++ ++|.+...|..++..+...|++++|+..|++++..+|.+..+|+.++.++...|+++
T Consensus 3 g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR--------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 466788888999988 788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL---GNLEDAFSLYE 482 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~---g~~e~A~~~~~ 482 (1167)
+|...|++++++. |++..+|+.++.++...|++++|+..|+++ ++++|++..+|..++.++..+ |++++|...|+
T Consensus 75 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 75 EAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRA-HQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999999987 889999999999999999999999999998 788999999999999999999 99999999999
Q ss_pred HHHHhhhCC
Q 001064 483 QAIAIEKGK 491 (1167)
Q Consensus 483 kAl~~~~~~ 491 (1167)
++++..|..
T Consensus 153 ~al~~~p~~ 161 (568)
T 2vsy_A 153 AAVAQGVGA 161 (568)
T ss_dssp HHHHHTCCC
T ss_pred HHHhcCCcc
Confidence 999998753
No 292
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.21 E-value=1.8e-11 Score=124.79 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=72.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEecc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~r 1109 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+|+.. +..++|+.|.|..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKI-MKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEEC-CCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEccccccc
Confidence 4689999999999999999999999999999875 66777899999999999999999999994 789999999998776
Q ss_pred CC
Q 001064 1110 PN 1111 (1167)
Q Consensus 1110 ~~ 1111 (1167)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 293
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.20 E-value=1.2e-10 Score=112.68 Aligned_cols=119 Identities=8% Similarity=0.025 Sum_probs=106.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHH
Q 001064 89 IVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVD 168 (1167)
Q Consensus 89 ~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~ 168 (1167)
+...||+..++|..+|..+.+ .|++++|+..|+++|+.+|.+..+|..++.++.+.|++++|+..|+++|++.|.+.+
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFK--KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 455899999999999999987 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 001064 169 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE 213 (1167)
Q Consensus 169 lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~ 213 (1167)
.|+.++..+. ..|++++|+..|+++|+..|.+ ..++..+..
T Consensus 83 a~~~lg~~~~-~~~~~~~A~~~~~~al~l~P~~---~~a~~~l~~ 123 (126)
T 4gco_A 83 GYIRKAACLV-AMREWSKAQRAYEDALQVDPSN---EEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCcCC---HHHHHHHHH
Confidence 9999999998 7899999999999999976654 555554443
No 294
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.20 E-value=2.1e-09 Score=121.31 Aligned_cols=245 Identities=7% Similarity=-0.036 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG-SMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g-~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
++|..+.....+.+..++|+.+++++|..+|.+..+|..-..++...+ .+++++..+++++..+ |++..+|.....++
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 445555555555566779999999999999999999999999999998 5999999999999988 89999999999999
Q ss_pred HHc-C-CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001064 434 EQN-G-DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLE--------DAFSLYEQAIAIEKGKEHSQTLPMLYAQ 503 (1167)
Q Consensus 434 e~~-g-~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e--------~A~~~~~kAl~~~~~~~~~~~~~~l~~~ 503 (1167)
... + ++++++.+++++ ++++|.+..+|..+..+..+.+.++ +++..++++|+.++.+ ...|.+
T Consensus 134 ~~l~~~~~~~EL~~~~k~-L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N------~SAW~~ 206 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGS-LLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN------NSAWGW 206 (349)
T ss_dssp HHHCCSCCHHHHHHHHHH-TSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHH
T ss_pred HHhcCCChHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC------HHHHHH
Confidence 887 7 899999999998 7899999999999998888888777 9999999999998654 558877
Q ss_pred HHHHHHHHhCC-------HHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChh-------------HHHH-HHHHHHHH
Q 001064 504 YSRFLHLVSRN-------AEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPK-------------QIDF-LEQLVDKF 562 (1167)
Q Consensus 504 ~a~~~~~~~g~-------~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~-------------~~~~-ar~l~era 562 (1167)
.+.++.. .++ ++++.+.+++++..+|++...|..+..+....+... .++. .-.+.+.+
T Consensus 207 R~~lL~~-l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (349)
T 3q7a_A 207 RWYLRVS-RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFG 285 (349)
T ss_dssp HHHHHTT-STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------
T ss_pred HHHHHHh-ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHH
Confidence 7766555 665 799999999999999999999975555554443320 0110 11222333
Q ss_pred hhcCCCC----CCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhhhCCC
Q 001064 563 LMSNSDS----PSTANAAEREELSCVFLEFLGLFGDAQLIKKAEDRHARLFLPH 612 (1167)
Q Consensus 563 l~~~~~~----~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v~~r~~~~~~~~ 612 (1167)
+...... ..+ ...-++...++.....|+.+.+.++.+++.+.+-+.
T Consensus 286 ~~~~~~~~~~~~~~----~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 286 FPMPSDPLPEDTPL----PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp CCCCC-CCCSSCCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHhcccccccCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 2221111 001 111245555555556689889999999887555443
No 295
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.19 E-value=2.9e-11 Score=123.80 Aligned_cols=77 Identities=22% Similarity=0.459 Sum_probs=71.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
.++|||+|||.++|+++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL-VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEE-EECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEE-EecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 489999999999999999999999999999875 55667899999999999999999999986 999999999999986
No 296
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=6.9e-10 Score=106.44 Aligned_cols=133 Identities=23% Similarity=0.317 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
..|..++..+...|++++|+.+|++++...|.+...|..++.++...|++++|..++++++... |....+|+.++.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3578888888899999999999999999999999999999999999999999999999999987 778899999999999
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
..|++++|+.+|+++ +...|++..+|..++.++.+.|++++|..+|++++...|
T Consensus 81 ~~~~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKA-LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999998 678999999999999999999999999999999998875
No 297
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=1.5e-10 Score=124.11 Aligned_cols=163 Identities=9% Similarity=-0.072 Sum_probs=138.4
Q ss_pred cccCCCCchHHHHHHHHHHhCCCC---HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH-
Q 001064 73 LVDGSAMSGEEDRLWNIVKANSSD---FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG---YWKKYADHEAR- 145 (1167)
Q Consensus 73 ~~~~~~~~~a~~~l~~~l~~nP~d---~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~---~W~~~a~~e~~- 145 (1167)
+.+.|++++|+..|+++++.+|.+ .++|+.++..+... +++++|+..|+++++.+|++.. +|+.++..+..
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~--~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN--ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence 344489999999999999999886 47999999999884 8999999999999999999874 67777777665
Q ss_pred -----------------hCCHHHHHHHHHHHHhccCCCHHHH-----------------HHHHHHHHhhcCCHHHHHHHH
Q 001064 146 -----------------VGSMDKVVEVYERAVQGVTYSVDIW-----------------LHYCIFAINTYGDPETIRRLF 191 (1167)
Q Consensus 146 -----------------~~~~e~A~~l~eraL~~~P~s~~lw-----------------~~ya~~~~~~~~~~~~Ar~~f 191 (1167)
.|++++|+..|++++..+|.+...| +..+.++. ..|++++|+..|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~ 170 (225)
T 2yhc_A 92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT-ERGAWVAVVNRV 170 (225)
T ss_dssp HC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHHHHHHHH
Confidence 5789999999999999999998776 34455666 579999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhh
Q 001064 192 ERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQ 238 (1167)
Q Consensus 192 eral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~ 238 (1167)
+++++..|.++.....|...+......|+++.|+..|++++..++.+
T Consensus 171 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 171 EGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 99999877765445788889999999999999999999998876653
No 298
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.18 E-value=7.9e-11 Score=109.36 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=68.1
Q ss_pred CccEEEEecCCC-----CCCHHHHHHHHhcCCCceeeeEeeecCC-CcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE
Q 001064 1030 EVKSVYVRNLPS-----TVTAFEIEEEFQNFGRIKPDGVFVRNRK-DVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1102 (1167)
Q Consensus 1030 ~~~~l~V~nlp~-----~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~ 1102 (1167)
+++.|+|+|+.. +-++++|+++|++||.|.+|.| ++++. +++++|||||+|.+.++|.+|+.. ||..|+||.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i-~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVI-FEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEE-EECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEE-ecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 468999999962 2378999999999999999876 44443 468899999999999999999986 999999999
Q ss_pred eEEEeccC
Q 001064 1103 VYIEERRP 1110 (1167)
Q Consensus 1103 l~V~~~r~ 1110 (1167)
|+|+++++
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99998764
No 299
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.18 E-value=1.1e-10 Score=115.19 Aligned_cols=116 Identities=10% Similarity=0.051 Sum_probs=106.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcc
Q 001064 84 DRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGV 163 (1167)
Q Consensus 84 ~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~ 163 (1167)
..|+++++.+|.+.+.|+.++..+.. .+++++|+..|++++..+|++..+|..++.++.+.|++++|+..|++++...
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQ--AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45677888999999999999999887 4899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001064 164 TYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDY 202 (1167)
Q Consensus 164 P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~ 202 (1167)
|.+..+|+.++..+. ..|++++|+..|++++...|.++
T Consensus 83 p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 83 INEPRFPFHAAECHL-QLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp TTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCG
T ss_pred CCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999998 78999999999999999877654
No 300
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=8.2e-10 Score=105.93 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
++|+.++..+...|++++|..+|++++... |....+|..++.++...|++++|+.+|+++ +...|++..+|..++.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA-LELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHH-HHHCCCchHHHHHHHHHH
Confidence 468889999999999999999999999877 778899999999999999999999999998 678999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 469 RRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
...|++++|+.+|++++...+. .+.++..++.++.. .|++++|+.+|+++++..|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH-HccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999998753 25678888888776 999999999999999988864
No 301
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.18 E-value=5.9e-10 Score=114.18 Aligned_cols=127 Identities=9% Similarity=0.043 Sum_probs=114.7
Q ss_pred ccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhCCH-
Q 001064 72 ELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADH-EARVGSM- 149 (1167)
Q Consensus 72 ~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~-e~~~~~~- 149 (1167)
.+...++++.++..|+++++.+|.+.++|+.++..+... +++++|+.+|++++..+|.+..+|..++.+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ--NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 344458999999999999999999999999999999874 899999999999999999999999999999 8899998
Q ss_pred -HHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 150 -DKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 150 -e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
++|+.+|++++...|.+..+|..++..+. ..|++++|+..|++++...|.+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAF-MQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcccHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999998 6899999999999999977665
No 302
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.18 E-value=5.5e-10 Score=125.96 Aligned_cols=176 Identities=14% Similarity=0.050 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc-----cC
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANY------PEYWIRYVLCMEASGSMDLAHNALARATHVFVK-----RL 422 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p-----~~ 422 (1167)
...+...+..+...|++++|+..|++++.+.+.. ..+|..++.++...|++++|+..|++++.++.. ..
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3455556677788899999999999999886432 347888888888899999999999999988632 12
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL------LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~------~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
..++..++.++.. |++++|+..|+++ +++.+.. ..++..++.++.++|++++|+.+|++++.+.+.......
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~A-l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQA-AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 4567778888888 9999999999998 5555432 467888899999999999999999999998764322111
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
....+..++.+... .|++++|+..|++++ ..|...
T Consensus 194 ~~~~~~~~g~~~~~-~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 194 CYKKCIAQVLVQLH-RADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHh-CCCCCC
Confidence 22355666666544 799999999999999 888643
No 303
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.17 E-value=7.1e-11 Score=119.99 Aligned_cols=80 Identities=25% Similarity=0.296 Sum_probs=70.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEeccC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERRP 1110 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r~ 1110 (1167)
++|||+|||.++|+++|+++|++||.|.+|.+ ++++ +|+++|||||+|.+.++|.+|+.. +|..++|+.|+|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKI-MIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEE-ECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEE-EECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 58999999999999999999999999999775 3343 578999999999999999999955 99999999999999876
Q ss_pred CCC
Q 001064 1111 NTG 1113 (1167)
Q Consensus 1111 ~~~ 1113 (1167)
...
T Consensus 79 ~~~ 81 (166)
T 3md3_A 79 SQQ 81 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 304
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.16 E-value=1.2e-10 Score=133.38 Aligned_cols=188 Identities=7% Similarity=-0.068 Sum_probs=154.7
Q ss_pred CcCCcccccCCCCcc----cCCCCCCCccCCCCcccc-------c---ccCCCCchHHHHHHHHHHhCCCCHHHHHHHHH
Q 001064 40 SMNGNVVNEAGNATS----TENGTSLGIESGAAAGQE-------L---VDGSAMSGEEDRLWNIVKANSSDFSAWTALLE 105 (1167)
Q Consensus 40 ~~~g~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~-------~---~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~ 105 (1167)
.+.+..+.|+..+.. +...+|.......-...+ + .....++++++.++++++.+|.+..+|..++.
T Consensus 76 ~~~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 76 DLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155 (336)
T ss_dssp TCCHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence 345567778877777 666666643221111110 0 01134667777888889999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 106 ETEKLAQDNIVKIRRVYDAFLAEFPLC---------------YGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 106 ~~~~~~~~~~~~ar~~ye~~l~~~P~~---------------~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
.+.+. +++++|+..|+++|..+|.+ ..+|..++.++.+.|++++|+..|+++|.+.|.+..+|
T Consensus 156 ~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 233 (336)
T 1p5q_A 156 VYFKE--GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL 233 (336)
T ss_dssp HHHHH--TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHC--CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 99874 89999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHH-HHHHHHHHh
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRV-AMIYTRILE 233 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A-~~iy~r~l~ 233 (1167)
+.++..+. ..+++++|+..|++++...|. ...+|..+.......++++++ +.+|++++.
T Consensus 234 ~~lg~~~~-~~g~~~~A~~~~~~al~l~P~---~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 234 SRRGEAHL-AVNDFELARADFQKVLQLYPN---NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 789999999999999996655 478899999999999999888 667877754
No 305
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.16 E-value=7.3e-11 Score=124.30 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=68.1
Q ss_pred CccEEEEecCC-CCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLP-STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++++|||+||| +.+|+++|+++|++||.|.+|+| +++ .+|||||+|.+.++|.+||+. ||..|.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i-~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKF-MKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEE-CTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEE-ecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46899999999 89999999999999999999875 322 379999999999999999986 99999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
++..
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8754
No 306
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.15 E-value=5.7e-11 Score=126.55 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=71.1
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+|+++|||||+|.+.++|.+||+. ++..|+|+.|+|...
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDM-SWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEE-CCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEE-eecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 4689999999999999999999999999999875 56777899999999999999999999985 899999999999876
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 544
No 307
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.14 E-value=8.5e-11 Score=120.76 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=69.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
..++|||+|||.++|+++|+++|++||.|..+ ..+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|+++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~------~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV------SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE------CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe------cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 46899999999999999999999999988752 55788999999999999999999986 999999999999999
Q ss_pred cCC
Q 001064 1109 RPN 1111 (1167)
Q Consensus 1109 r~~ 1111 (1167)
+++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 876
No 308
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.13 E-value=2.8e-11 Score=124.35 Aligned_cols=82 Identities=12% Similarity=0.270 Sum_probs=73.5
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEec
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~~ 1108 (1167)
.+.++|||+|||.++|+++|+++|+.||.|.. +.+.+..+|+++|||||+|.+.++|.+||+.+|..|+|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~--~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND--LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce--EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 35799999999999999999999999999876 3356667889999999999999999999987999999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
.++.
T Consensus 89 ~~~~ 92 (175)
T 1fje_B 89 KGRD 92 (175)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 309
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.13 E-value=3.8e-10 Score=111.34 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=95.9
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
.|+++++ ++|.+...|..++..+...|++++|+..|++++..+|.++.+|+.++.++...|++++|+..|++
T Consensus 6 ~l~~al~--------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 6 TLAMLRG--------LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp ---CCTT--------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHc--------CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3666666 78888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 461 (1167)
++.+. |+++.+|+.++.++...|++++|+..|+++ ++++|++...+
T Consensus 78 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~ 123 (142)
T 2xcb_A 78 GALMD-INEPRFPFHAAECHLQLGDLDGAESGFYSA-RALAAAQPAHE 123 (142)
T ss_dssp HHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTCGGGH
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCcchH
Confidence 88876 788888888888888888888888888887 66677665443
No 310
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.13 E-value=1.5e-10 Score=117.94 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=70.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeC--cEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAG--RQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g--~~l~V~ 1106 (1167)
..++|||+|||..+++++|+++|++||.|..+.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+| ++|+|+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNI-LRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEE-EEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 3589999999999999999999999999999875 56777889999999999999999999986 8999987 899998
Q ss_pred ec
Q 001064 1107 ER 1108 (1167)
Q Consensus 1107 ~~ 1108 (1167)
++
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 311
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.13 E-value=6.1e-10 Score=123.98 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=67.3
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-CcEeEEE
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1106 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~-g~~l~V~ 1106 (1167)
.++++|||+|||.++++++|+++|++||.|.+|++. .++ +|||||+|.+.++|.+||.. +|..|+ |+.|+|+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~-~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe-cCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 457899999999999999999999999999998753 222 58999999999999999986 899999 9999999
Q ss_pred ecc
Q 001064 1107 ERR 1109 (1167)
Q Consensus 1107 ~~r 1109 (1167)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 312
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.13 E-value=1.3e-10 Score=127.10 Aligned_cols=206 Identities=11% Similarity=-0.034 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhcC-----------
Q 001064 324 KAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNY-------LDFIERDGDFNKVVKLYERCLIACA----------- 385 (1167)
Q Consensus 324 ~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y-------~~~~e~~g~~~~a~~~yeral~~~p----------- 385 (1167)
...++..|+..|.+++. ++|...+.|..+ +..+....+..+++..+.+.+...|
T Consensus 18 ~~~d~~~A~~~F~~a~~--------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITN--------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred cCCCHHHHHHHHHHHHH--------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 36788899999999998 899999999999 6787888888889999999998443
Q ss_pred CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001064 386 NY----------PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSP 455 (1167)
Q Consensus 386 ~~----------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P 455 (1167)
.+ .++++.|+..|...|++++|+.+|..++... |... .++..+.++.+.+++++|+..|+++ .. .|
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a-~~-~~ 165 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHL-VAWMKAVVYGAAERWTDVIDQVKSA-GK-WP 165 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTG-GG-CS
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchH-HHHHHHHHHHHcCCHHHHHHHHHHh-hc-cC
Confidence 23 5688889999999999999999999888766 6666 8888999999999999999999987 44 33
Q ss_pred Ch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCC
Q 001064 456 GL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQL 531 (1167)
Q Consensus 456 ~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~-~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~ 531 (1167)
+. ..+++.++.++.++|++++|+..|++++.... .+. .+.+++.++..+.. +|+.++|+.+|++++...|+
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~----~P~~~~da~~~~glaL~~-lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPA----GEACARAIAWYLAMARRS-QGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT----TTTTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSCC
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC----CccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCc
Confidence 33 35789999999999999999999999985431 022 46678888888776 99999999999999999999
Q ss_pred CHHHHHHHHHhHhhCC
Q 001064 532 SKPLLEALIHFESIQS 547 (1167)
Q Consensus 532 ~~~l~~~~~~~e~~~~ 547 (1167)
...+..+........
T Consensus 241 -~~~~~aL~~~~~~~~ 255 (282)
T 4f3v_A 241 -PKVAAALKDPSYRLK 255 (282)
T ss_dssp -HHHHHHHHCTTCCCC
T ss_pred -HHHHHHHhCCCCCCC
Confidence 998888877666543
No 313
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.13 E-value=7.1e-11 Score=115.08 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=84.5
Q ss_pred CCcchhHhHHHHHHHHhhhcCcc-----ccc------cccc---CCceEEEEcCCcccc---hhchHHHHHHHhcCCCcc
Q 001064 716 AYPAQVGSYFVGQYYQVLQQQPD-----LVH------QFYS---DASSMIRVDGDSTES---ASSMLDIHSLVISLNFTA 778 (1167)
Q Consensus 716 ~~~~~vg~~Fv~~YY~~l~~~p~-----~l~------~fY~---~~s~~~~~~g~~~~~---~~~~~~i~~~~~~l~~~~ 778 (1167)
..+.+.+..|++.||..||+.+. .|. ++|. ..++.+.|||+.+.. ..+...|.+++..||.+.
T Consensus 23 ~~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNGnp~~~~~~~~gr~~fqk~w~~lP~Sq 102 (201)
T 1q42_A 23 QDPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQPIIPSPQEDCKLQFQKKWLQTPLSS 102 (201)
T ss_dssp CCGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTEECCCCSSCCHHHHHHHHHHTSCCEE
T ss_pred CCcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcCcccccccccccHHHHHHHHHhCCCcc
Confidence 46788999999999999998886 888 7883 334566699998722 145667889999999999
Q ss_pred eeEeeeeccccCC-CceEEEEEEEEEecCccccceeEEEEEEeee
Q 001064 779 IEIKTINSLGSWN-GGVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 822 (1167)
Q Consensus 779 ~~i~~~d~q~~~~-~~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~ 822 (1167)
+.|+++|||+.++ +.++|.|.|.|+.++. ..++|.|+|.|..+
T Consensus 103 HqL~SlDahpIpGq~T~lI~asGkVrFDes-gr~~fgQsf~Lta~ 146 (201)
T 1q42_A 103 HQLTSYDGHLIPGTGTFVVHFSAKVRFDQS-GRNRLGESADLFQE 146 (201)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEEEBCS-SCCTTSCCC-----
T ss_pred eeeeeeecceeCCCcEEEEEEeEEEEECCC-CcCcCCCcEEEecc
Confidence 9999999999874 4699999999999986 68999999999866
No 314
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.12 E-value=4.6e-10 Score=107.07 Aligned_cols=108 Identities=12% Similarity=0.202 Sum_probs=90.8
Q ss_pred hCCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHhccCCC--------HHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 001064 128 EFPLCYGYWKKYADHEARVGSM------DKVVEVYERAVQGVTYS--------VDIWLHYCIFAINTYGDPETIRRLFER 193 (1167)
Q Consensus 128 ~~P~~~~~W~~~a~~e~~~~~~------e~A~~l~eraL~~~P~s--------~~lw~~ya~~~~~~~~~~~~Ar~~fer 193 (1167)
..|.+++.|..|++++.+.|+. ++.+++|+|++...|.. +-||+.|+.|.. .+|+++||.+|+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e--i~D~d~aR~vy~~ 85 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA--IQEPDDARDYFQM 85 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH--HHCGGGCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH--hcCHHHHHHHHHH
Confidence 4688888888888888877888 88888888888888763 689999998853 5899999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHH
Q 001064 194 GLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLD 240 (1167)
Q Consensus 194 al~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~ 240 (1167)
++.. ...| ..+|..|+.||.+++++++||+|+.+++...+...+
T Consensus 86 a~~~-hKkF--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 86 ARAN-CKKF--AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHH-CTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHH-hHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 9996 5555 899999999999999999999999999998555443
No 315
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.12 E-value=5.1e-10 Score=111.53 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=88.1
Q ss_pred HHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 335 FETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 335 ~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
|++++. ++|.+...|..++..+...|++++|+..|++++..+|.++.+|+.++.++...|++++|+..|+++
T Consensus 10 ~~~al~--------~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 10 IAMLNE--------ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHTT--------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc--------CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666 677777778887777777788888888888888888888888888887777778888888888888
Q ss_pred HHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHH
Q 001064 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLE 459 (1167)
Q Consensus 415 ~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~ 459 (1167)
+.+. |+++.+|+.++.++...|++++|+..|+++ +++.|+++.
T Consensus 82 l~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~~~~ 124 (148)
T 2vgx_A 82 AVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLA-QELIANXPE 124 (148)
T ss_dssp HHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHTTCGG
T ss_pred HhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCcCCCc
Confidence 7776 677777777777777777777777777776 566665543
No 316
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.12 E-value=1e-10 Score=130.25 Aligned_cols=197 Identities=11% Similarity=0.040 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
+...|...+..+...|++++|+..|++++..+|.+..+|..++.++...|++++|...|++++++. |++..+|+.+|.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 356788888888899999999999999999999999999999999999999999999999999987 8899999999999
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
+...|++++|+..|+++ ++++|++...+...+....+. .+............+ ..+.+...++.++ .
T Consensus 82 ~~~~g~~~~A~~~~~~a-l~l~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~i~~~l~~l~---~ 148 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRA-YSLAKEQRLNFGDDIPSALRI---AKKKRWNSIEERRIH------QESELHSYLTRLI---A 148 (281)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHHHHTTCCCCSHHHHHHHH---HHHHHHHHHHHTCCC------CCCHHHHHHHHHH---H
T ss_pred HHHcCCHHHHHHHHHHH-HHhCccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHh------hhHHHHHHHHHHH---H
Confidence 99999999999999998 677776532111111111111 112222222222221 2245666666662 6
Q ss_pred CCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhc
Q 001064 513 RNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMS 565 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~ 565 (1167)
|++++|.+.|+++++..|++..+...+..+.... .+..+.++.+|+++...
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKH--DKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH--HHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH--HHHHHHHHHHHHhhhcc
Confidence 8899999999999999999887777666555443 12356788899888653
No 317
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.12 E-value=1.4e-10 Score=118.94 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=70.2
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeee---CcEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQV 1103 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g--~~kg~afV~F~~~~~a~~Al~~-~~~~i~---g~~l 1103 (1167)
+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++.+| +++|||||+|.+.++|.+|++. ++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINV-LRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE-EEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-EecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4589999999999999999999999999999876 5566666 8999999999999999999986 777665 5678
Q ss_pred EEEeccCCC
Q 001064 1104 YIEERRPNT 1112 (1167)
Q Consensus 1104 ~V~~~r~~~ 1112 (1167)
.|.......
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888766543
No 318
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.12 E-value=2.3e-10 Score=130.93 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=127.6
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---------------PEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---------------~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
+++.....|..++..+.+.|++++|+..|++++..+|.+ ..+|+.++.++...|++++|+..|++
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566778899999999999999999999999999999998 68999999999999999999999999
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhh
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDA-FSLYEQAIAIE 488 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A-~~~~~kAl~~~ 488 (1167)
++.+. |++..+|+.++.++...|++++|+..|+++ ++++|++..+|..++.++.++|+++++ ..+|++++...
T Consensus 222 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 222 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKV-LQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99987 889999999999999999999999999998 789999999999999999999999888 56778777654
No 319
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.10 E-value=1.9e-10 Score=116.96 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=69.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE--eEEEe
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ--VYIEE 1107 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~--l~V~~ 1107 (1167)
.++|||+|||.++++++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|++. +|..|+|+. |+|.+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRI-LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEE-EecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 478999999999999999999999999999876 55677889999999999999999999986 899999975 78876
Q ss_pred c
Q 001064 1108 R 1108 (1167)
Q Consensus 1108 ~ 1108 (1167)
+
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 320
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.10 E-value=1.1e-10 Score=124.01 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=67.6
Q ss_pred CCCccEEEEecCCCCC---------CHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001064 1028 EGEVKSVYVRNLPSTV---------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1097 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~ 1097 (1167)
+...++||||||+..+ ++++|+++|++||.|.+|+|. .+||||||+|.+.++|+.|++. +|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-------~~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-------ESKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-------GGGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-------CCCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4467999999999998 799999999999999998753 2579999999999999999987 8888
Q ss_pred e------------eCcEeEEEeccCCCC
Q 001064 1098 L------------AGRQVYIEERRPNTG 1113 (1167)
Q Consensus 1098 i------------~g~~l~V~~~r~~~~ 1113 (1167)
| +|+.|.|.+++..+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 8 899999999987543
No 321
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.10 E-value=2.3e-09 Score=107.63 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|...+..+...|++++|+..|++++..+|.+..+|+.++.++...|++++|+..|++++.+. |.++.+|+.++.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 46688888888899999999999999999999999999999999999999999999999999987 78899999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAI--IKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~--~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
...|++++|+..|+++ ++++|++..+| +..+..+.+.|++++|+.+++++....+
T Consensus 92 ~~~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 92 MALGKFRAALRDYETV-VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 9999999999999998 78899999888 4455557788999999999998887654
No 322
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.09 E-value=3.6e-09 Score=119.44 Aligned_cols=235 Identities=9% Similarity=0.015 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCC
Q 001064 309 EELEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG-DFNKVVKLYERCLIACANY 387 (1167)
Q Consensus 309 ~~~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g-~~~~a~~~yeral~~~p~~ 387 (1167)
+.....+..+..+....+..++++..++++|. ++|.+..+|..-...+...+ ++++++.+++++|..+|.+
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~--------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn 122 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVR--------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS 122 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Confidence 34444555555566666666789999999998 89999999999999888888 5999999999999999999
Q ss_pred HHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHH--------HHHHHHHHHhhhcCCCh
Q 001064 388 PEYWIRYVLCMEAS-G-SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDID--------GARAAYQLVHTETSPGL 457 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~-g-~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~--------~A~~~~~~a~~~~~P~~ 457 (1167)
..+|..-..++... + +.++++..+.++++.. |++..+|....-++...|.++ ++++.++++ ++.+|.|
T Consensus 123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~-I~~dp~N 200 (349)
T 3q7a_A 123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM-LRVDGRN 200 (349)
T ss_dssp HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HHHCTTC
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH-HHhCCCC
Confidence 99999999999887 7 8899999999999987 889999999988888877777 899999998 7889999
Q ss_pred HHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHH--------------
Q 001064 458 LEAIIKHANMERRLGN-------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAE-------------- 516 (1167)
Q Consensus 458 ~~~~~~~a~~e~r~g~-------~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~-------------- 516 (1167)
..+|..+..+..++++ +++++++++++|...|++ ..+|..+..++.. .|+-.
T Consensus 201 ~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n------~SaW~Ylr~Ll~~-~~~~~~~~~~~~~~~~~~~ 273 (349)
T 3q7a_A 201 NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN------VSAWNYLRGFLKH-FSLPLVPILPAILPYTASK 273 (349)
T ss_dssp HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-TTCCSGGGHHHHGGGTC--
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCCCccccccccccccccc
Confidence 9999999999888886 799999999999999754 5578766655544 44320
Q ss_pred ---HHHHHHHHHHhhc---------CCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHh
Q 001064 517 ---KARQILVDSLDHV---------QLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFL 563 (1167)
Q Consensus 517 ---~Ar~i~~kal~~~---------p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral 563 (1167)
.--.+.+-+++.. +.+...+..++++....++ .+.+..+|+...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~---~~~a~~~~~~l~ 329 (349)
T 3q7a_A 274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR---VDDAAKVFEKLS 329 (349)
T ss_dssp ------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Confidence 0112333333332 3566777777766655554 455777777754
No 323
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7.7e-10 Score=101.31 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=62.3
Q ss_pred ccEEEEecCC-------CCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEe
Q 001064 1031 VKSVYVRNLP-------STVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQV 1103 (1167)
Q Consensus 1031 ~~~l~V~nlp-------~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l 1103 (1167)
.++|-|.-.. .++++++|+++|++||.|.+|.|. ++++|||||+|.+.++|..||.. +..+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~------~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS------SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE------SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc------cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeE
Confidence 3566666543 468999999999999999997653 35789999999999999999987 455689999
Q ss_pred EEEeccCCCC
Q 001064 1104 YIEERRPNTG 1113 (1167)
Q Consensus 1104 ~V~~~r~~~~ 1113 (1167)
+|+++++++.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999887643
No 324
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.09 E-value=2.3e-10 Score=127.43 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=71.0
Q ss_pred CCccEEEEecCCCCCCHHHHH----HHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIE----EEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQV 1103 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l 1103 (1167)
.+.++|||+|||.++|+++|+ ++|++||.|.+|.+ + .+|+++|||||+|.+.++|.+||+. +|..|.|+.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~-~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILV-S---RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEE-c---CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 357999999999999999977 89999999999764 2 2678999999999999999999966 8999999999
Q ss_pred EEEeccCCC
Q 001064 1104 YIEERRPNT 1112 (1167)
Q Consensus 1104 ~V~~~r~~~ 1112 (1167)
+|++++.+.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999887644
No 325
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=4.7e-09 Score=111.32 Aligned_cols=177 Identities=11% Similarity=-0.025 Sum_probs=147.2
Q ss_pred HHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHH
Q 001064 330 SKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASG----SMD 405 (1167)
Q Consensus 330 ~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g----~~e 405 (1167)
+|+..|+++++ . .+...+..++.++...+++++|+.+|++++.. .+++.++.++.++.. + +++
T Consensus 4 eA~~~~~~aa~--------~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAE--------A--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHH--------T--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHH--------C--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHH
Confidence 35556777765 2 34678999999998899999999999999875 689999999998876 6 899
Q ss_pred HHHHHHHHHHHhhhccChHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhcCC--ChHHHHHHHHHHHHH----cCCHH
Q 001064 406 LAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARAAYQLVHTETSP--GLLEAIIKHANMERR----LGNLE 475 (1167)
Q Consensus 406 ~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~~~~~a~~~~~P--~~~~~~~~~a~~e~r----~g~~e 475 (1167)
+|+..|+++++ +.++..++.++.++.. .+++++|+..|+++ .+..+ ++..+++.++.++.. .++++
T Consensus 71 ~A~~~~~~A~~---~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A-~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 71 QARQLAEKAVE---AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDA-ARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH-TSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH-HHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999976 5688999999999987 88999999999998 66676 358899999999988 78999
Q ss_pred HHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhhcC
Q 001064 476 DAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR-----NAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 476 ~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g-----~~~~Ar~i~~kal~~~p 530 (1167)
+|+.+|+++++.. +. +..+..++.++..-.| ++++|+..|++|++.-.
T Consensus 147 ~A~~~~~~A~~~~-~~------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 147 KASEYFKGSSSLS-RT------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHTS-CT------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC-CC------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999882 21 3467778877654233 89999999999998743
No 326
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=9.7e-10 Score=103.75 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCC-----------HHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCe
Q 001064 1030 EVKSVYVRNLPSTVT-----------AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQ 1097 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t-----------~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~ 1097 (1167)
+.++|+|+||..... +++|+++|++||.|.+|. +.++ .++|||||+|.+.++|.+|+.. +|..
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~--i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLL--LFDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEE--EETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEE--EecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 579999999944332 589999999999999974 3443 3789999999999999999976 8999
Q ss_pred eeCcEeEEEeccCCCC
Q 001064 1098 LAGRQVYIEERRPNTG 1113 (1167)
Q Consensus 1098 i~g~~l~V~~~r~~~~ 1113 (1167)
|+|+.|+|+++.++..
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999887543
No 327
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.06 E-value=2.4e-09 Score=109.56 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=113.1
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH-HHHcCCH--HHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF-KEQNGDI--DGA 442 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~-~e~~g~~--~~A 442 (1167)
..|++++|+..|++++...|.+..+|+.++.++...|++++|+..|++++.+. |+++.+|+.++.+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 45788999999999999999999999999999999999999999999999988 7889999999999 7789998 999
Q ss_pred HHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 443 RAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 443 ~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
+..|+++ ++++|++..+|+.++.++...|++++|+.+|++++...|.+
T Consensus 101 ~~~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKA-LALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHH-HHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 9999998 78899999999999999999999999999999999998753
No 328
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.05 E-value=3.4e-10 Score=116.07 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=67.9
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---CcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~---g~~l~V 1105 (1167)
..++|||+|||.++|+++|+++|++||.|.++.+ +++ .+|+++|||||+|.+.++|.+|++. +|..+. |+.|+|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI-LRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE-EEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 4589999999999999999999999999999875 444 3588999999999999999999976 887666 489999
Q ss_pred Eec
Q 001064 1106 EER 1108 (1167)
Q Consensus 1106 ~~~ 1108 (1167)
.++
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 886
No 329
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=1e-08 Score=115.52 Aligned_cols=200 Identities=12% Similarity=0.053 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LL 458 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~ 458 (1167)
.+.+.+.++...|++++|...|.+++.+.... ...++...+.++...|++++|+..|+++ +++.+. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A-l~l~~~~g~~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA-SVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHH-HHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHHHHcCCHHHHH
Confidence 34444566778899999999999999987321 2457778889999999999999999998 444321 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH-----
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK----- 533 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~----- 533 (1167)
.+|...+.++.. |++++|+.+|++|+.+.+..........++..++.++.. .|++++|+.+|+++++..+.+.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 568888888888 999999999999999986432222234578888999776 9999999999999999876542
Q ss_pred -HHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCHHHHHHH
Q 001064 534 -PLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSPSTANAAEREELSCVFLEFLGLFGDAQLIKKA 601 (1167)
Q Consensus 534 -~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~~~Gd~~~~~~v 601 (1167)
..+...+......++ .+.+..+|++++ ..+..... . ...++...+... ..||.+....+
T Consensus 195 ~~~~~~~g~~~~~~g~---~~~A~~~~~~al-~~p~~~~~---~-e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRAD---YVAAQKCVRESY-SIPGFSGS---E-DCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHT-TSTTSTTS---H-HHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHh-CCCCCCCC---H-HHHHHHHHHHHH-HhcCHHHHHHH
Confidence 244455555555555 667899999999 76654321 1 112333333333 35776665553
No 330
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.03 E-value=4.8e-09 Score=100.66 Aligned_cols=113 Identities=10% Similarity=-0.067 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|...+..+.+.|++++|+..|++++..+|.+..+|..++.++...|++++|+..|++++.+. |+++.+|+.++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777777777777777777777777777766 66777777777777
Q ss_pred HHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHHHHH
Q 001064 434 EQNGDIDGARAAYQLVHTETS------PGLLEAIIKHANME 468 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a~~e 468 (1167)
...|++++|+..|+++ ++++ |++..++..+..+.
T Consensus 83 ~~~~~~~~A~~~~~~a-l~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAA-RTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHH-HHhCcccCCchhHHHHHHHHHHHH
Confidence 7777777777777776 5666 66666665555443
No 331
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.03 E-value=1.5e-10 Score=121.47 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=66.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeE----eeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGV----FVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYI 1105 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i----~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V 1105 (1167)
..++|||+|||.++|+++|+++|++||.|..+.+ .+.+...++++|||||+|.+.++|.+||..+|..|+|+.|+|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEE
Confidence 3599999999999999999999999964433200 122223456789999999999999999966999999999999
Q ss_pred EeccCCC
Q 001064 1106 EERRPNT 1112 (1167)
Q Consensus 1106 ~~~r~~~ 1112 (1167)
.+++...
T Consensus 83 ~~~~~~~ 89 (198)
T 2yh0_A 83 RRPHDYQ 89 (198)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9877653
No 332
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.02 E-value=4.8e-09 Score=100.09 Aligned_cols=124 Identities=14% Similarity=0.014 Sum_probs=113.3
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
.++.....|..++..+...|++++|+..|++++..+|.+..+|..++.++...|++++|+..+++++... |+++.+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 85 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGR 85 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHH
Confidence 4566678899999988899999999999999999999999999999999999999999999999999987 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCH
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNL 474 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~ 474 (1167)
++.++...|++++|+..|+++ +++.|++..+|..++.++.++|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKA-LELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-HhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998 788999999999999888888765
No 333
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.02 E-value=3.8e-10 Score=126.36 Aligned_cols=81 Identities=23% Similarity=0.427 Sum_probs=71.2
Q ss_pred CccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCC-CcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRK-DVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~-~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
.+++|||+|||.+ +|+++|+++|++||.|..|.| +++.. ||+++|||||+|.+.++|.+|+..+|..|+|+.|+|.+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i-~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~ 287 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINI-PAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSL 287 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEEC-CSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEE-EecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEE
Confidence 4689999999999 999999999999999999875 33443 58999999999999999999994489999999999999
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
++++
T Consensus 288 a~~k 291 (292)
T 2ghp_A 288 ADKK 291 (292)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9876
No 334
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.01 E-value=3.9e-09 Score=101.41 Aligned_cols=123 Identities=14% Similarity=0.020 Sum_probs=110.5
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLF 428 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~ 428 (1167)
..+.....|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|+..|++++.+. |.+..+|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 4566788899999999999999999999999999999999999999999989999999999999999987 788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 429 AARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 429 ~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
++.++...|++++|+..|+++ ++++|++..+|..++.++.++|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKA-LDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999998 67899998888888888776654
No 335
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.01 E-value=9.4e-10 Score=118.33 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=68.7
Q ss_pred CccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
++++|||+|||. ++++++|+++|++||.|.+|.+ ++++ +|||||+|.+.++|.+||+. +|..|+|+.|+|++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i-~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEE-CCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-EECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 569999999999 9999999999999999999765 3332 68999999999999999975 99999999999999
Q ss_pred ccCCC
Q 001064 1108 RRPNT 1112 (1167)
Q Consensus 1108 ~r~~~ 1112 (1167)
++.+.
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 88653
No 336
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.00 E-value=8.3e-10 Score=123.01 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=73.3
Q ss_pred CccEEEEecCCCCC-CHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1030 EVKSVYVRNLPSTV-TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~-t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
..++|||+|||.++ |+++|+++|++||.|.++.| +++. +|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.+
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i-~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQL-ACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEE-EECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEE-EECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 46899999999995 99999999999999999875 3343 789999999999999999999986 99999999999999
Q ss_pred ccCCCC
Q 001064 1108 RRPNTG 1113 (1167)
Q Consensus 1108 ~r~~~~ 1113 (1167)
++++..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 987643
No 337
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.00 E-value=1.1e-09 Score=122.08 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=74.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.++|||+|||.++|+++|+++|++||.|.++.+ ++++.+|+++|||||+|.+.++|.+|+.. +|..|+|+.|+|.++.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i-~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFL-VYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEE-EeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 479999999999999999999999999999875 66777899999999999999999999965 8999999999999987
Q ss_pred CCC
Q 001064 1110 PNT 1112 (1167)
Q Consensus 1110 ~~~ 1112 (1167)
++.
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 654
No 338
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.00 E-value=9e-10 Score=121.02 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=68.0
Q ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEe
Q 001064 1029 GEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1029 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~ 1107 (1167)
.+.++|||+|||.++|+++|+++|++||.|.+|.+ . +++|||||+|.+.++|.+|+.. +|..|+|+.|+|.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-N------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-E------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-e------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 35689999999999999999999999999999764 2 3579999999999999999985 99999999999998
Q ss_pred ccCC
Q 001064 1108 RRPN 1111 (1167)
Q Consensus 1108 ~r~~ 1111 (1167)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8653
No 339
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.00 E-value=6.6e-10 Score=116.65 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=67.6
Q ss_pred ccEEEEecCCC-CCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEec
Q 001064 1031 VKSVYVRNLPS-TVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEER 1108 (1167)
Q Consensus 1031 ~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~ 1108 (1167)
+++|||+|||. ++++++|+++|++||.|.+|.+ ++++ +|||||+|.+.++|.+|+.. +|..|+|+.|+|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i-~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI-LFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEEC-STTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-EeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 58999999999 9999999999999999999764 3222 68999999999999999985 999999999999998
Q ss_pred cCCC
Q 001064 1109 RPNT 1112 (1167)
Q Consensus 1109 r~~~ 1112 (1167)
+...
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
No 340
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.99 E-value=1.6e-08 Score=101.47 Aligned_cols=131 Identities=12% Similarity=0.004 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
....|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+..|++++...|.+..+|..++.
T Consensus 12 ~~~~~~~~a~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFK--AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 35778899998887 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH--HHHHhhhHHHHHHHHHHHH
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIE--YEYMQQEWSRVAMIYTRIL 232 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~--~e~~~~~~~~A~~iy~r~l 232 (1167)
.+. ..|++++|+..|++++...+.+ ..+|..+.. .....+++++|...|.++.
T Consensus 90 ~~~-~~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNM-ALGKFRAALRDYETVVKVKPHD---KDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 988 7899999999999999976654 556644443 3566788888888887764
No 341
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.99 E-value=6.6e-09 Score=109.45 Aligned_cols=136 Identities=10% Similarity=-0.010 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
++..+..+...|++++|+..|++++ +.++.+|+.++.++...|++++|+..|+++ ++++|++..+|+.++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRS-INRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCccchHHHHHHHHHHHH
Confidence 4566666777888888888888774 236778888888888888888888888887 67788888888888988888
Q ss_pred cCCHHHHHHHHHHHHHhhhCCC----------ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 471 LGNLEDAFSLYEQAIAIEKGKE----------HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 471 ~g~~e~A~~~~~kAl~~~~~~~----------~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
+|++++|+..|++++...+.+. ..+..+.++..++.++.. .|++++|+..|+++++..|++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999998876543 234456788899999776 999999999999999999976
No 342
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.99 E-value=8.7e-10 Score=112.74 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=64.5
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcC----C-------CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCee
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNF----G-------RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQL 1098 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i 1098 (1167)
+.++|||+|||.++|+++|+++|++| | .|.++. .++++|||||+|.+.++|.+|+..+|..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~-------~~~~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-------INQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE-------EETTTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE-------ecCCCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 46999999999999999999999999 5 444432 34568999999999999999996699999
Q ss_pred eCcEeEEEeccCC
Q 001064 1099 AGRQVYIEERRPN 1111 (1167)
Q Consensus 1099 ~g~~l~V~~~r~~ 1111 (1167)
+|+.|+|...+..
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987654
No 343
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.98 E-value=8.2e-09 Score=99.04 Aligned_cols=102 Identities=10% Similarity=0.023 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHH
Q 001064 94 SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 173 (1167)
Q Consensus 94 P~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y 173 (1167)
|.+.+.|..++..+.. .+++++|+..|++++..+|.+..+|..++.++.+.|++++|+..|+++|...|.+...|+.+
T Consensus 1 p~~a~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYFT--KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4456789999998887 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhc
Q 001064 174 CIFAINTYGDPETIRRLFERGLAYV 198 (1167)
Q Consensus 174 a~~~~~~~~~~~~Ar~~feral~~~ 198 (1167)
+..+. ..|++++|+..|++++...
T Consensus 79 g~~~~-~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 79 ATAQI-AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHhCHHHHHHHHHHHHHhC
Confidence 99988 6899999999999999876
No 344
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.98 E-value=3.6e-08 Score=110.07 Aligned_cols=174 Identities=11% Similarity=0.048 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----C
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE------YWIRYVLCMEASGSMDLAHNALARATHVFVKR-----L 422 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~------~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~ 422 (1167)
...|...+..+...|++++|+..|++++...+.... .++..+.++...|++++|...|++++.+.... .
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 455666677778899999999999999998766543 34456666777889999999999999865321 1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHT--ETSPGL----LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~--~~~P~~----~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
..++...+.++...|++++|...|++++. +..|++ ..++...+.++.++|++++|+.+|++++.+.+.......
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788899999999999999999999841 334552 268899999999999999999999999998754333344
Q ss_pred hHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhh
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKA-RQILVDSLDH 528 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~A-r~i~~kal~~ 528 (1167)
...++..+|.++.. .|++++| ...|++|+..
T Consensus 235 ~~~~~~~lg~~y~~-~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRK-LEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHH
Confidence 56788889988776 9999999 8889999864
No 345
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.96 E-value=5.8e-09 Score=105.38 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=95.5
Q ss_pred ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHH
Q 001064 350 SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFA 429 (1167)
Q Consensus 350 d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~ 429 (1167)
++.+...|...+..+...|++++|+.+|++++..+|.+..+|+.++.++...|++++|+..|++++.+. |++..+|+.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455677888888888888889999999999998888888888888888888888888888888888877 7788888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 001064 430 ARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHA 465 (1167)
Q Consensus 430 a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a 465 (1167)
+.++...|++++|+..|+++ ++++|++...|+..+
T Consensus 86 g~~~~~~g~~~~A~~~~~~a-l~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG-IEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHHSSSCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH-HHhCCCchHHHHHHH
Confidence 88888888888888888887 677888877665544
No 346
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.96 E-value=1.2e-09 Score=133.37 Aligned_cols=171 Identities=9% Similarity=-0.007 Sum_probs=150.1
Q ss_pred HHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001064 328 FDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGD----------FNKVVKLYERCLIACANYPEYWIRYVLC 397 (1167)
Q Consensus 328 ~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~----------~~~a~~~yeral~~~p~~~~~w~~ya~~ 397 (1167)
.++|+..++++|. ++|+...+|..-...+...++ +++++..|++++..+|.+..+|..-+-+
T Consensus 45 ~eeal~~~~~~l~--------~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 45 DESVLELTSQILG--------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp SHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--------HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3567899999998 899999999998888877777 8999999999999999999999999999
Q ss_pred HHHcC--CHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc---
Q 001064 398 MEASG--SMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG-DIDGARAAYQLVHTETSPGLLEAIIKHANMERRL--- 471 (1167)
Q Consensus 398 l~~~g--~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g-~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~--- 471 (1167)
+...+ ++++++..+++++++. |++..+|...+.++...| .++++++.++++ ++.+|.+..+|..++.+..++
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~-I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL-ITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT-TTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHH-HHHCCCCccHHHHHHHHHHhhccc
Confidence 99999 6799999999999988 889999999999999999 899999999998 789999999999999888775
Q ss_pred -----------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCH
Q 001064 472 -----------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNA 515 (1167)
Q Consensus 472 -----------g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~ 515 (1167)
+.++++++++.+||...|.+ ..+|..+..++.. .++.
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~------~saW~y~~~ll~~-~~~~ 242 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWFYHRWLLGR-AEPH 242 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC------SHHHHHHHHHHSC-CCCC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCC------ccHHHHHHHHHhc-CCCc
Confidence 55799999999999999754 4578766665443 4543
No 347
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=1.8e-08 Score=123.11 Aligned_cols=169 Identities=7% Similarity=-0.048 Sum_probs=149.2
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC-
Q 001064 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGS----------MDLAHNALARATHVFVKRLPEIHLFAARFKEQNG- 437 (1167)
Q Consensus 369 ~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~----------~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g- 437 (1167)
-.++|+.+|+++|..+|.+..+|..-+.++...++ +++++..++++++.+ |++..+|...+-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34688999999999999999999999999988887 899999999999988 899999999999999999
Q ss_pred -CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH----
Q 001064 438 -DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLG-NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---- 511 (1167)
Q Consensus 438 -~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g-~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---- 511 (1167)
++++++..++++ ++++|.+..+|..++.+..+.| .++++++.++++|+.++.+ ...|.+.+.++...
T Consensus 123 ~~~~~el~~~~k~-l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n------~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 123 PNWARELELCARF-LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN------YSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC------HHHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHH-HhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC------ccHHHHHHHHHHhhcccc
Confidence 779999999998 7899999999999999999999 8999999999999998653 56887777776652
Q ss_pred ---------hCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhh
Q 001064 512 ---------SRNAEKARQILVDSLDHVQLSKPLLEALIHFESI 545 (1167)
Q Consensus 512 ---------~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~ 545 (1167)
.+.++++.+++.+|+..+|++...|..+..+...
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 1568999999999999999999999654444433
No 348
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.95 E-value=1.2e-08 Score=103.15 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=100.8
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
.++.+.+.|+.++..+.. .+++++|+..|++++..+|.+..+|..++.++.+.|++++|+..|+++|...|.+..+|+
T Consensus 6 ~~~~~a~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMA--RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp SCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 356678899999999987 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCC
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDY 202 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~ 202 (1167)
.++..+. ..|++++|+..|++++...|.+.
T Consensus 84 ~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 84 RLGLARF-DMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHH-HccCHHHHHHHHHHHHHhCCCch
Confidence 9999998 78999999999999999887763
No 349
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=3.2e-08 Score=110.46 Aligned_cols=175 Identities=11% Similarity=0.082 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH-----HHH-HHHHHHHcCCHHHHHHHHHHHHHhhhccC-----
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEY-----WIR-YVLCMEASGSMDLAHNALARATHVFVKRL----- 422 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~-----w~~-ya~~l~~~g~~e~A~~vl~rA~~~~~p~~----- 422 (1167)
...+...+..+...+++++|...|++++...+..++. |+. .+.++...+++++|+..|++++.+.....
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 3444445666678899999999999999987777662 333 56666667899999999999999653222
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhh------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHT------ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~------~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
..++...+.++...|++++|...|++++. ...+....++..++.++.++|++++|+.+|++++++.+.......
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 23688899999999999999999999842 122334557899999999999999999999999998875544455
Q ss_pred hHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhc
Q 001064 497 LPMLYAQYSRFLHLVSR-NAEKARQILVDSLDHV 529 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g-~~~~Ar~i~~kal~~~ 529 (1167)
...++..+|.++.. .| ++++|...|++|+...
T Consensus 235 ~~~~~~~lg~~~~~-~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 235 IGQLYYQRGECLRK-LEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHH
Confidence 57789999999776 88 5799999999998643
No 350
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.95 E-value=1.7e-09 Score=100.44 Aligned_cols=80 Identities=24% Similarity=0.373 Sum_probs=65.9
Q ss_pred CccEEEEecC--CCCCC--------HHHHHHHHhcCCCceeeeEeeecCCC--cccccEEEEEECCHHHHHHHHHh-CCC
Q 001064 1030 EVKSVYVRNL--PSTVT--------AFEIEEEFQNFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPI 1096 (1167)
Q Consensus 1030 ~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~~~--g~~kg~afV~F~~~~~a~~Al~~-~~~ 1096 (1167)
+.+.|.+.|+ |.++. +++|++.|++||.|.+|.| .+++.+ ++++|||||+|.+.++|.+|+.. ||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i-~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEI-PRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEEC-CCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEE-eccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4588999998 33443 3699999999999999875 444433 46899999999999999999977 999
Q ss_pred eeeCcEeEEEeccC
Q 001064 1097 QLAGRQVYIEERRP 1110 (1167)
Q Consensus 1097 ~i~g~~l~V~~~r~ 1110 (1167)
.++||.|+|++...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998653
No 351
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.94 E-value=2e-08 Score=93.92 Aligned_cols=113 Identities=10% Similarity=0.009 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|...+..+...|++++|+..|++++...|.+..+|..++.++...|++++|...+++++... |.++.+|..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 46688888888888999999999999999999999999999998888999999999999999877 77888999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
...|++++|+..|+++ ++++|++..+|..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG-LKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHH-HTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH-HHcCCCCHHHHHHHHHhh
Confidence 9999999999999998 788898888888777664
No 352
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.94 E-value=1.5e-08 Score=106.62 Aligned_cols=129 Identities=13% Similarity=0.012 Sum_probs=116.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHc
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQN 436 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~ 436 (1167)
+...+..+...|++++|+..|++++ ..++.+|+.++.++...|++++|+..|++++.+. |++..+|+.++.++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 4556667778999999999999996 3478999999999999999999999999999987 88999999999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCChH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 437 GDIDGARAAYQLVHTETSPGLL----------------EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 437 g~~~~A~~~~~~a~~~~~P~~~----------------~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
|++++|+..|+++ +++.|++. .+|+.++.++..+|++++|+..|++++...|.
T Consensus 85 ~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEA-LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHH-HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHH-HHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 9999999999998 67666654 89999999999999999999999999999864
No 353
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.94 E-value=2.1e-08 Score=97.30 Aligned_cols=123 Identities=10% Similarity=-0.007 Sum_probs=106.4
Q ss_pred HhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 91 KANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 91 ~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
..+|.+...|+.++..+... +++++|...|++++..+|.+..+|..++.++...|++++|+..|++++...|.+...|
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHH
Confidence 45788999999999999874 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHH
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYL--SFPLWDKYIEYEY 216 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~--s~~lw~~y~~~e~ 216 (1167)
+.++..+. ..|++++|+..|++++...+.+.. ...++..+.....
T Consensus 81 ~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 81 FFLGQCQL-EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 99999998 789999999999999997665221 3456655555443
No 354
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.93 E-value=3e-09 Score=111.29 Aligned_cols=133 Identities=9% Similarity=0.016 Sum_probs=111.5
Q ss_pred hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 351 VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYP----------------EYWIRYVLCMEASGSMDLAHNALARA 414 (1167)
Q Consensus 351 ~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~----------------~~w~~ya~~l~~~g~~e~A~~vl~rA 414 (1167)
+.....|...+..+...|++++|+..|++++..+|.++ .+|..++.++...|++++|+..++++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44567788889888899999999999999999988887 89999999999999999999999999
Q ss_pred HHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 001064 415 THVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF-SLYEQAI 485 (1167)
Q Consensus 415 ~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~-~~~~kAl 485 (1167)
+.+. |++..+++.++.++...|++++|+..|+++ ++++|++..++..++.+...+++.+++. ..|.+.+
T Consensus 115 l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 115 LKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA-ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH-HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987 788999999999999999999999999998 7889999999998888887777766655 3444433
No 355
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.93 E-value=1.2e-09 Score=115.08 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=60.0
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCc--eeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCc
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRI--KPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR 1101 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i--~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~ 1101 (1167)
++++|||+|||+++|+++|+++|++||.| .++++ +.++ |..+|||||+|.+.++|.+||.. ||..|+|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~-~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV-FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE-CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 46899999999999999999999999999 77654 3332 45679999999999999999987 89999987
No 356
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.93 E-value=2.6e-09 Score=116.75 Aligned_cols=192 Identities=10% Similarity=-0.005 Sum_probs=156.9
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhhhcc-----C-----------
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRY-------VLCMEASGSMDLAHNALARATHVFVKR-----L----------- 422 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~y-------a~~l~~~g~~e~A~~vl~rA~~~~~p~-----~----------- 422 (1167)
..++...|+..|.+++..+|...++|+.+ +..+...+...+++..+.+++.+.+.. .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 46899999999999999999999999999 788888888888889999999865311 1
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCch-
Q 001064 423 ----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTL- 497 (1167)
Q Consensus 423 ----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~- 497 (1167)
..+++.++.++...|++++|+.+|+.+ ....|++. .++.++.+..+.+++++|+..|++++.... +..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~-~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d-----~~~~ 170 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAA-PVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD-----KFLA 170 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSS-CCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC-----HHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC-----cccH
Confidence 467888999999999999999999997 67789888 888899999999999999999997766431 111
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc--CC-CHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCC
Q 001064 498 PMLYAQYSRFLHLVSRNAEKARQILVDSLDHV--QL-SKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSD 568 (1167)
Q Consensus 498 ~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~--p~-~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~ 568 (1167)
..+++.++..+.. .|++++|+..|++++... |. ....+...+.....+|. .+.++.+|++++...|+
T Consensus 171 ~~a~~~LG~al~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr---~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAAN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN---ESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc
Confidence 2477888888776 999999999999998654 54 44455556666666665 67799999999988775
No 357
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.92 E-value=5e-10 Score=103.84 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=60.0
Q ss_pred EecCCCCCCHHHHHHHH------------hcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcE
Q 001064 1036 VRNLPSTVTAFEIEEEF------------QNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQ 1102 (1167)
Q Consensus 1036 V~nlp~~~t~~~l~~~F------------~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~ 1102 (1167)
+.||+..+++++|+++| ++||.|.+|.| +++ .+|+++|||||+|.+.++|.+|+.. ||..++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i-~~~-~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNV-CDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEE-EeC-CCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56777888888777666 99999999875 334 3578999999999999999999986 999999999
Q ss_pred eEEEec
Q 001064 1103 VYIEER 1108 (1167)
Q Consensus 1103 l~V~~~ 1108 (1167)
|+|+++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999874
No 358
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.92 E-value=2.1e-09 Score=118.01 Aligned_cols=81 Identities=23% Similarity=0.288 Sum_probs=70.3
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh--CCCeee---CcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA--SPIQLA---GRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~--~~~~i~---g~~l~ 1104 (1167)
++++|||+|||..+|+++|+++|++||.|.+|.| +.+ .+|+++|||||+|.+.++|.+||.. ++..+. |+.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i-~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVV-VVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-EEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEe-eeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 3579999999999999999999999999999876 444 5889999999999999999999987 355554 89999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|+++.+..
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99887643
No 359
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=9.8e-09 Score=114.09 Aligned_cols=167 Identities=9% Similarity=-0.054 Sum_probs=131.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
|.....|+..|..+...|++++|+..|++++... |+++.+|..++.++...|++++|+..|+++ ++++|++..+|+.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA-LELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCCCCHHHHHHH
Confidence 4567889999999999999999999999999987 889999999999999999999999999998 78999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
+.++..+|++++|+..|++++.+.|++..... ..++..+ + ..++...........+.+..+...+..|..
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~ 148 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSAL-----R----IAKKKRWNSIEERRIHQESELHSYLTRLIA 148 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-SHHHHHH-----H----HHHHHHHHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-HHHHHHH-----H----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999999999999999999999985421111 1222222 1 233344444444567777777766666542
Q ss_pred hCCChhHHHHHHHHHHHHhhcCCC
Q 001064 545 IQSSPKQIDFLEQLVDKFLMSNSD 568 (1167)
Q Consensus 545 ~~~~~~~~~~ar~l~eral~~~~~ 568 (1167)
.+.+.+...|++++...++
T Consensus 149 -----~~~~~A~~~~~~al~~~p~ 167 (281)
T 2c2l_A 149 -----AERERELEECQRNHEGHED 167 (281)
T ss_dssp -----HHHHHHHTTTSGGGTTTSC
T ss_pred -----HHHHHHHHHHHhhhccccc
Confidence 2355667777888776554
No 360
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.92 E-value=1.1e-08 Score=98.16 Aligned_cols=121 Identities=10% Similarity=-0.003 Sum_probs=100.8
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
..|.+..+|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...+++++|+++|++++...|.+..+|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQ--KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHH--TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH
Confidence 357788899999998876 478899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Q 001064 172 HYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 218 (1167)
Q Consensus 172 ~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~ 218 (1167)
.++..+. ..+++++|+..|++++...+.+ ..+|..+...+..+
T Consensus 89 ~la~~~~-~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 89 RKAAALE-AMKDYTKAMDVYQKALDLDSSC---KEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHCGGG---THHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHh
Confidence 9988888 6789999999999999865543 45666666555443
No 361
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.91 E-value=2e-09 Score=120.38 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=67.9
Q ss_pred CCCccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeEEEe
Q 001064 1028 EGEVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVYIEE 1107 (1167)
Q Consensus 1028 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~V~~ 1107 (1167)
+.+.++|||+|||.++|+++|+++|+.||.|.+|.| +++.. + ++|||||+|.+.++|.+||+.+|..|+|+.|.|..
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i-~~~~~-~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDV-ADSLK-K-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEE-EECTT-S-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECCC-C-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 346799999999999999999999999999999875 44443 2 57999999999999999998799999999999987
Q ss_pred ccC
Q 001064 1108 RRP 1110 (1167)
Q Consensus 1108 ~r~ 1110 (1167)
...
T Consensus 115 ~~~ 117 (292)
T 2ghp_A 115 LTE 117 (292)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 362
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=7.8e-08 Score=106.42 Aligned_cols=205 Identities=9% Similarity=0.036 Sum_probs=154.0
Q ss_pred HHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHH
Q 001064 331 KIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACA--NYPEYWIRYVLCMEASGSMDLAH 408 (1167)
Q Consensus 331 a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p--~~~~~w~~ya~~l~~~g~~e~A~ 408 (1167)
++..|++.+.. ++.....+...+..+...|++++|+.++.++|...+ .+.+++...+.++...|+.+.|+
T Consensus 85 a~~~l~~l~~~--------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKD--------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp CCHHHHHTTTT--------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 67778888762 222234456777788889999999999999998876 88899999999999999999999
Q ss_pred HHHHHHHHhhhc------cChHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhcCCC--hHHHHHHHHHHHHHcCCHHHHH
Q 001064 409 NALARATHVFVK------RLPEIHLFAARFKEQNG--DIDGARAAYQLVHTETSPG--LLEAIIKHANMERRLGNLEDAF 478 (1167)
Q Consensus 409 ~vl~rA~~~~~p------~~~~l~~~~a~~~e~~g--~~~~A~~~~~~a~~~~~P~--~~~~~~~~a~~e~r~g~~e~A~ 478 (1167)
+.+++..+.. | +...+.+.-+.+....| ++.+|..+|+++ .+..|+ ...+++. ++.++|++++|.
T Consensus 157 k~l~~~~~~~-~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El-~~~~p~~~~~~lLln---~~~~~g~~~eAe 231 (310)
T 3mv2_B 157 TIFDNYTNAI-EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL-SQTFPTWKTQLGLLN---LHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH-HTTSCSHHHHHHHHH---HHHHHTCHHHHH
T ss_pred HHHHHHHhcC-ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHhCCCcccHHHHHH---HHHHcCCHHHHH
Confidence 9999998876 4 34444444453344444 999999999997 676787 2333333 778899999999
Q ss_pred HHHHHHHHhhhCC--C--ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHhhCCChhHHHH
Q 001064 479 SLYEQAIAIEKGK--E--HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFESIQSSPKQIDF 554 (1167)
Q Consensus 479 ~~~~kAl~~~~~~--~--~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~~~~~~~~~~~ 554 (1167)
.+++++++..|.- . ..+.++.++.+.+.+.+. .|+ +|.++++++.+..|+++.+.+ +..
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~-lgk--~a~~l~~qL~~~~P~hp~i~d--------------~~~ 294 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM-QGL--DTEDLTNQLVKLDHEHAFIKH--------------HQE 294 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH-TTC--TTHHHHHHHHHTTCCCHHHHH--------------HHH
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH-hCh--HHHHHHHHHHHhCCCChHHHH--------------HHH
Confidence 9999888775320 0 013458888788777666 786 999999999999999987762 333
Q ss_pred HHHHHHHHhhc
Q 001064 555 LEQLVDKFLMS 565 (1167)
Q Consensus 555 ar~l~eral~~ 565 (1167)
....|+++...
T Consensus 295 k~~~Fd~~~~k 305 (310)
T 3mv2_B 295 IDAKFDELVRK 305 (310)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 45667776554
No 363
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.91 E-value=1.2e-08 Score=97.24 Aligned_cols=124 Identities=13% Similarity=0.066 Sum_probs=107.6
Q ss_pred HhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 91 KANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 91 ~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
+.+|.+...|..++..+... +++++|...|++++..+|.+..+|..++.++...|++++|+.+|++++...|.+..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKV--ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcchhhhHHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence 35677888999999998874 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhh
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQE 220 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~ 220 (1167)
..++..+. ..+++++|+..|++++...+. ...+|..++......++
T Consensus 84 ~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALS-SLNKHVEAVAYYKKALELDPD---NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHhc
Confidence 99999888 689999999999999996554 46777777776665544
No 364
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.90 E-value=3.7e-08 Score=92.99 Aligned_cols=116 Identities=22% Similarity=0.262 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFK 433 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~ 433 (1167)
...|..++..+...|++++|+.+|++++...|.+..+|..++.++...|++++|..+|++++... |.++.+|..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 56788888888888889999999999988888888888888888888888888888888888876 67788888888888
Q ss_pred HHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001064 434 EQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 471 (1167)
Q Consensus 434 e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 471 (1167)
...|++++|+..|+++ ++++|++..++..++.+..+.
T Consensus 88 ~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA-LELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH-HHhCCCcHHHHHHHHHHHHhc
Confidence 8888888888888887 677888888887777666544
No 365
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.90 E-value=2.7e-09 Score=114.70 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=67.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCC-CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-CcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~-g~~l~V~ 1106 (1167)
++++|||+|||.++++++|+++|++|| .|..|.+ +.+ .+|||||+|.+.++|.+|+.. +|..|+ |+.|+|.
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i-~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF-FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE-CSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE-EEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 469999999999999999999999999 9999764 221 468999999999999999986 899999 9999999
Q ss_pred eccCC
Q 001064 1107 ERRPN 1111 (1167)
Q Consensus 1107 ~~r~~ 1111 (1167)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98864
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.89 E-value=4.3e-09 Score=99.59 Aligned_cols=79 Identities=29% Similarity=0.364 Sum_probs=66.2
Q ss_pred CccEEEEecCC--CCC---CHHHHHHHHhcCCCceeeeEeeecCC----CcccccEEEEEECCHHHHHHHHHh-CCCeee
Q 001064 1030 EVKSVYVRNLP--STV---TAFEIEEEFQNFGRIKPDGVFVRNRK----DVVGVCYAFVEFEDISGVQNAIQA-SPIQLA 1099 (1167)
Q Consensus 1030 ~~~~l~V~nlp--~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~----~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~ 1099 (1167)
+++.|+++|+- .++ -+++|++.|++||.|.+|.|.. ++. +++++||+||+|.+.++|.+|+.. ||..|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~-~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ-EKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEE-EEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEee-cCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 46899999983 222 3689999999999999987643 332 467889999999999999999987 999999
Q ss_pred CcEeEEEecc
Q 001064 1100 GRQVYIEERR 1109 (1167)
Q Consensus 1100 g~~l~V~~~r 1109 (1167)
||.|+|++..
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999864
No 367
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.88 E-value=1.8e-09 Score=113.24 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=67.7
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCC-CceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee-CcEeEEE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFG-RIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA-GRQVYIE 1106 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~-g~~l~V~ 1106 (1167)
++++|||+|||..+++++|+++|++|| .|.++.+ +++ .+|||||+|.+.++|.+|+.. +|..|+ |+.|+|.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i-~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF-FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE-SST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE-EeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 469999999999999999999999999 9999764 222 368999999999999999986 899999 9999999
Q ss_pred eccCC
Q 001064 1107 ERRPN 1111 (1167)
Q Consensus 1107 ~~r~~ 1111 (1167)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98764
No 368
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.88 E-value=4.3e-09 Score=125.65 Aligned_cols=128 Identities=9% Similarity=0.037 Sum_probs=93.3
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---------------PEYWIRYVLCMEASGSMDLAHNALAR 413 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---------------~~~w~~ya~~l~~~g~~e~A~~vl~r 413 (1167)
+++.....|...+..+.+.|++++|+..|++|+..+|.+ ..+|+.++.++...|++++|+..|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 455667788888888888889999999999999888887 56777777777777777777777777
Q ss_pred HHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 001064 414 ATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAF 478 (1167)
Q Consensus 414 A~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~ 478 (1167)
++.+. |++..+|+.++.++...|++++|+..|+++ ++++|++..+|..++.++.++++++++.
T Consensus 343 al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a-l~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 343 ALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKV-LEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77766 667777777777777777777777777776 6677777777777777766666665544
No 369
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.88 E-value=1.2e-08 Score=97.66 Aligned_cols=102 Identities=16% Similarity=0.035 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKE 434 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e 434 (1167)
..|...+..+.+.|++++|+..|++++..+|.+.++|+.++.++...|++++|+..|++++++. |+++.+|+.++.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4577888888888999999999999999999999999999999989999999999999999887 788889999999998
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChH
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~ 458 (1167)
..|++++|+..|+++ ++++|++.
T Consensus 97 ~~g~~~~A~~~~~~a-l~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAW-LLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHH-HC------
T ss_pred HcCCHHHHHHHHHHH-HHhCcCCC
Confidence 899999999999987 67788764
No 370
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.88 E-value=8.6e-09 Score=95.54 Aligned_cols=107 Identities=9% Similarity=0.040 Sum_probs=98.3
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCC--CHHH
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTY--SVDI 169 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~--s~~l 169 (1167)
.+|.+.+.|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+.+|++++...|. +..+
T Consensus 1 l~p~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYD--AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGGGGHHHHHHS--SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence 378899999999999887 479999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhc-CCHHHHHHHHHHHHHhcCCC
Q 001064 170 WLHYCIFAINTY-GDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 170 w~~ya~~~~~~~-~~~~~Ar~~feral~~~g~d 201 (1167)
|..++..+. .. +++++|+..|++++...|.+
T Consensus 79 ~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 79 WAAKADALR-YIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHT-TCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHhhcccCC
Confidence 999999988 78 99999999999999876654
No 371
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.87 E-value=4.1e-09 Score=110.19 Aligned_cols=144 Identities=14% Similarity=-0.011 Sum_probs=114.6
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh----------------HHHHHHH
Q 001064 367 DGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP----------------EIHLFAA 430 (1167)
Q Consensus 367 ~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~----------------~l~~~~a 430 (1167)
.++++++...|+......+.....|...+..+...|++++|+..|.+++.+. |..+ .+|..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444556788999999999999999999999999987 5665 8999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHL 510 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~ 510 (1167)
.++...|++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++++.+.|.+ +.++..++.+...
T Consensus 96 ~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKV-LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHH
Confidence 9999999999999999998 78899999999999999999999999999999999998643 6677777777555
Q ss_pred HhCCHHHHH
Q 001064 511 VSRNAEKAR 519 (1167)
Q Consensus 511 ~~g~~~~Ar 519 (1167)
.++.+++.
T Consensus 169 -~~~~~~~~ 176 (198)
T 2fbn_A 169 -LKEARKKD 176 (198)
T ss_dssp -HHHHHC--
T ss_pred -HHHHHHHH
Confidence 55555554
No 372
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.86 E-value=7.3e-08 Score=90.90 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=99.3
Q ss_pred hCCCC-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 92 ANSSD-FSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 92 ~nP~d-~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
.+|.+ ...|+.++..+.. .+++++|.+.|++++..+|.+..+|..++.++.+.|++++|+.+|++++...|.+..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp ----CHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH
Confidence 35655 7889999998887 47999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEY 214 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~ 214 (1167)
..++..+. ..+++++|+..|++++...+.+ ..++..+...
T Consensus 81 ~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 120 (125)
T 1na0_A 81 YNLGNAYY-KQGDYDEAIEYYQKALELDPNN---AEAKQNLGNA 120 (125)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHH
Confidence 99999888 6899999999999999966543 4555555443
No 373
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=5e-08 Score=101.49 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=125.1
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-----ccChHHHHHHHHHHHHcCCHH
Q 001064 366 RDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-----KRLPEIHLFAARFKEQNGDID 440 (1167)
Q Consensus 366 ~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~-----p~~~~l~~~~a~~~e~~g~~~ 440 (1167)
..|++++|...++.+.........+|..++.++...|++++|+..|++++.+.. +....++...+.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 468888998855554443235678999999999999999999999999999652 334567888899999999999
Q ss_pred HHHHHHHHHhhhc---CC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhC
Q 001064 441 GARAAYQLVHTET---SP----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSR 513 (1167)
Q Consensus 441 ~A~~~~~~a~~~~---~P----~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g 513 (1167)
+|+..|+++ +++ .+ ....++..++.++..+|++++|+.+|++++..............++..++.++.. .|
T Consensus 84 ~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g 161 (203)
T 3gw4_A 84 AARRCFLEE-RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ-EK 161 (203)
T ss_dssp HHHHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHH-HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-Cc
Confidence 999999997 444 33 2345688889999999999999999999998765332222223446778888766 99
Q ss_pred CHHHHHHHHHHHHhhc
Q 001064 514 NAEKARQILVDSLDHV 529 (1167)
Q Consensus 514 ~~~~Ar~i~~kal~~~ 529 (1167)
++++|+..|+++++..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999764
No 374
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.85 E-value=2e-08 Score=97.45 Aligned_cols=103 Identities=11% Similarity=-0.047 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKH 464 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~ 464 (1167)
+.....|+.++..+...|++++|...|++++.+. |+++.+|+.++.++...|++++|+..|+++ ++++|++..+|+.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA-LELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHhCchhHHHHHHH
Confidence 3344444555544444455555555555554444 444445555555555555555555555554 34455555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 465 ANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 465 a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
+.++..+|++++|+..|++++...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 5555555555555555555555544
No 375
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.85 E-value=6.6e-08 Score=102.40 Aligned_cols=181 Identities=11% Similarity=-0.051 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC----CHHHHHHHHH
Q 001064 372 KVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG----DIDGARAAYQ 447 (1167)
Q Consensus 372 ~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g----~~~~A~~~~~ 447 (1167)
+|+.+|+++... .+++.++.++.++...+++++|+..|+++++ ..++..++.++.++.. + ++++|+..|+
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA---QGDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 477899999876 7899999999999999999999999999987 4578999999999887 6 9999999999
Q ss_pred HHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHH---hCCHHHHHH
Q 001064 448 LVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLV---SRNAEKARQ 520 (1167)
Q Consensus 448 ~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~---~g~~~~Ar~ 520 (1167)
++. .+++..+++.++.++.. .+++++|+.+|+++++..+. ...+..+..++.++..- .+++++|+.
T Consensus 78 ~A~---~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 78 KAV---EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES----DAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHH---HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS----HHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHH---HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC----cchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 983 56889999999999887 78999999999999987631 02356788888885541 568999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhHhh-CC--ChhHHHHHHHHHHHHhhcC
Q 001064 521 ILVDSLDHVQLSKPLLEALIHFESI-QS--SPKQIDFLEQLVDKFLMSN 566 (1167)
Q Consensus 521 i~~kal~~~p~~~~l~~~~~~~e~~-~~--~~~~~~~ar~l~eral~~~ 566 (1167)
+|+++++. +.+...+..+..+... .+ ...+.+.+..+|++++...
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999998 4444444444444332 22 2334677889999987764
No 376
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=5.8e-08 Score=90.64 Aligned_cols=113 Identities=13% Similarity=0.013 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCI 175 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~ 175 (1167)
..+.|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+..|++++...|.+..+|..++.
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALS--VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 35678888888876 4789999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001064 176 FAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEY 214 (1167)
Q Consensus 176 ~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~ 214 (1167)
.+. ..|++++|+..|++++...+. ...+|..+..+
T Consensus 81 ~~~-~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALE-FLNRFEEAKRTYEEGLKHEAN---NPQLKEGLQNM 115 (118)
T ss_dssp HHH-HTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHH
T ss_pred HHH-HHhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHh
Confidence 888 678999999999999985443 45666665553
No 377
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.85 E-value=4.9e-09 Score=125.14 Aligned_cols=150 Identities=10% Similarity=-0.013 Sum_probs=129.7
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLC---------------YGYWKKYAD 141 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~---------------~~~W~~~a~ 141 (1167)
..++++++.++.+++.+|.+..+|..++..+.+. +++++|+..|+++|..+|.+ ..+|..++.
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKG--GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3466777778888899999999999999999874 89999999999999999999 699999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhH
Q 001064 142 HEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEW 221 (1167)
Q Consensus 142 ~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~ 221 (1167)
++.+++++++|+..|+++|.+.|.+...|+.++..+. ..+++++|+..|++++...|. ...+|..+...+...+++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~-~~g~~~~A~~~~~~al~l~P~---~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQ---NKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 789999999999999996554 467888888888888887
Q ss_pred HHH-HHHHHHHH
Q 001064 222 SRV-AMIYTRIL 232 (1167)
Q Consensus 222 ~~A-~~iy~r~l 232 (1167)
+++ +.+|.+++
T Consensus 402 ~~a~~~~~~~~f 413 (457)
T 1kt0_A 402 NERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 766 45555544
No 378
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.84 E-value=1.5e-08 Score=96.89 Aligned_cols=98 Identities=8% Similarity=-0.049 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001064 99 AWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAI 178 (1167)
Q Consensus 99 aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~ 178 (1167)
.|+.++..+.. .+++++|+..|+++++.+|++..+|..++.++...|++++|+..|+++|.+.|.+.+.|..++..+.
T Consensus 19 ~~~~~g~~~~~--~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLK--LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35555555554 2566666666666666666666666666666666666666666666666666666666666666665
Q ss_pred hhcCCHHHHHHHHHHHHHhcC
Q 001064 179 NTYGDPETIRRLFERGLAYVG 199 (1167)
Q Consensus 179 ~~~~~~~~Ar~~feral~~~g 199 (1167)
..|++++|+..|++++...|
T Consensus 97 -~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 -NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp -HHHHHHHHHHHHHHHHC---
T ss_pred -HcCCHHHHHHHHHHHHHhCc
Confidence 45666666666666665433
No 379
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=3.5e-08 Score=96.76 Aligned_cols=120 Identities=14% Similarity=0.033 Sum_probs=106.7
Q ss_pred CChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHH
Q 001064 349 LSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANY---PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEI 425 (1167)
Q Consensus 349 ld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~---~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l 425 (1167)
.++.....|...+..+...|++++|+.+|++++..+|.+ ..+|+.++.++...|++++|+..|++++.+. |+++.+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 445678889999999999999999999999999999987 7899999999999999999999999999987 788999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 001064 426 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERR 470 (1167)
Q Consensus 426 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r 470 (1167)
|+.++.++...|++++|+..|+++ ++++|++..+|..+..+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRC-VSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHhh
Confidence 999999999999999999999998 78899999888877766543
No 380
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.81 E-value=5.4e-08 Score=93.91 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCcc-CchHHH
Q 001064 422 LPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHS-QTLPML 500 (1167)
Q Consensus 422 ~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~-~~~~~l 500 (1167)
....|..++..+.+.|++++|+..|+++ ++++|++..+|..++.++.++|++++|+..|+++|++.|..... .....+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~A-l~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKA-IELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3445667788888999999999999998 78999999999999999999999999999999999998753211 122346
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 001064 501 YAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALI 540 (1167)
Q Consensus 501 ~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~ 540 (1167)
|..+|.++.. .|++++|++.|+++|+..|+ +.+...+.
T Consensus 86 ~~~lg~~~~~-~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 86 MSRAGNAFQK-QNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 7778888666 99999999999999998885 44443333
No 381
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.81 E-value=4.5e-08 Score=97.09 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACAN-------YPE-----YWIRYVLCMEASGSMDLAHNALARATHVFVK 420 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~-------~~~-----~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p 420 (1167)
....|...+..+.+.|++++|+..|++||..+|. +.. +|...+.++...|++++|+..|++|+++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 4567777777777778888888888888888777 332 6666666666666666666666555542
Q ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhhCC
Q 001064 421 RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI----IKHANMERRLGNLEDAFSLYEQAIAIEKGK 491 (1167)
Q Consensus 421 ~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~----~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~ 491 (1167)
|++. .+++|++..+| ++.+..+..+|++++|+..|++|+++.|++
T Consensus 87 -------------------------~n~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 87 -------------------------FNRR-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp -------------------------HHHH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred -------------------------hhcc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3343 45699999999 999999999999999999999999999864
No 382
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=9.8e-08 Score=93.47 Aligned_cols=117 Identities=19% Similarity=0.045 Sum_probs=92.0
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 420 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 420 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
+.....|+..+..+...|++++|...|+++ +++.|++ ..+|+.++.++...|++++|+.+|++++...|.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 97 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQA-LGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------ 97 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------
Confidence 456677777788888888888888888887 6777876 777888888888888888888888888888753
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhHh
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFES 544 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e~ 544 (1167)
.+.+|..++.++.. .|++++|+.+|+++++..|++..++..+..+..
T Consensus 98 ~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 98 DVKALYRRSQALEK-LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 25677778877666 888888888888888888888888876666654
No 383
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.76 E-value=5.7e-08 Score=97.75 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIA------------------CANYPEYWIRYVLCMEASGSMDLAHNALARAT 415 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~------------------~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~ 415 (1167)
...|...+..+.+.|++++|+..|+++|.. .|....+|..++.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456888888888889999999999999988 44444556666665555666666666666666
Q ss_pred HhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH
Q 001064 416 HVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLL 458 (1167)
Q Consensus 416 ~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~ 458 (1167)
.+. |+++.+|+.++.++...|++++|+..|+++ ++++|++.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a-l~l~p~~~ 131 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLL-LRNHPAAA 131 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCGGGH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHH-HhcCCCCH
Confidence 554 555556666666666666666666666655 45555555
No 384
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.76 E-value=1.5e-07 Score=90.68 Aligned_cols=100 Identities=9% Similarity=-0.008 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh-------HHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP-------EIH 426 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~-------~l~ 426 (1167)
...|+.++..+.+.|++++|+..|++||..+|.+..+|..++.++...|++++|+..|++++++. |+.. .+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHHH
Confidence 45688888888899999999999999999999999999999999999999999999999999987 4332 344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCC
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSP 455 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P 455 (1167)
...+.++...|++++|+..|+++ ++..|
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~ka-l~~~~ 114 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRS-LSEFR 114 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-HHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HhhCc
Confidence 55555555666666666666665 34444
No 385
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.75 E-value=3.3e-09 Score=121.30 Aligned_cols=156 Identities=10% Similarity=0.070 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
....|...+..+.+.|++++|+..|++++..+|.+.. +...++.+++...+ ...+|+.++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 4455566666556667777777777777766655331 11112222222111 11367777777
Q ss_pred HHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHh
Q 001064 433 KEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVS 512 (1167)
Q Consensus 433 ~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~ 512 (1167)
+.+.|++++|+..|+++ ++++|++..+|+.++.++..+|++++|+..|++++.+.|++ +.++..++.+.....
T Consensus 240 ~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~------~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIV-LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD------KAIRRELRALAEQEK 312 (338)
T ss_dssp HHTTTCCHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHH
Confidence 77888888888888887 67788888888888888888888888888888888777532 445556665544445
Q ss_pred CCHHHHHHHHHHHHhhcCCCH
Q 001064 513 RNAEKARQILVDSLDHVQLSK 533 (1167)
Q Consensus 513 g~~~~Ar~i~~kal~~~p~~~ 533 (1167)
+..++++.+|++++...|++.
T Consensus 313 ~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHhhCCCCCCC
Confidence 667778888888887777654
No 386
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.75 E-value=4e-08 Score=98.90 Aligned_cols=102 Identities=12% Similarity=-0.026 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----------------hccChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVF-----------------VKRLPEIHLFAARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~-----------------~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
...|...|..+...|++++|+..|.+++.+. .|....+|+.++.++...|++++|+..|+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a- 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV- 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-
Confidence 4578888998999999999999999999982 2566789999999999999999999999998
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 451 TETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 451 ~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
++++|++..+|+.++.++..+|++++|+..|++++.+.|+
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999999999999874
No 387
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.74 E-value=1.2e-07 Score=90.32 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC-------hHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL-------PEI 425 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~-------~~l 425 (1167)
....|..++..+...|++++|+..|++++..+|.+..+|+.++.++...|++++|...|++++... |.. ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHH
Confidence 356788888888889999999999999999999999999999999988999999999999999887 454 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 001064 426 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMER 469 (1167)
Q Consensus 426 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~ 469 (1167)
|+.++.++...|++++|+..|+++ +++.| +..++..+..+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~-~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKS-LAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH-HHhCC-CHHHHHHHHHHHH
Confidence 888888888888888888888887 56677 4556555554443
No 388
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.74 E-value=4e-07 Score=100.71 Aligned_cols=199 Identities=16% Similarity=0.139 Sum_probs=149.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh-ccChHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV-KRLPEIHLFAAR 431 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~-p~~~~l~~~~a~ 431 (1167)
.......|+.|+. ++ ++..+++.+...+.....++.++.++...|++++|+.++.+++...+ ....+++...+.
T Consensus 70 ~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq 144 (310)
T 3mv2_B 70 LGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE 144 (310)
T ss_dssp THHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence 3445666777763 22 77888888876556677778899999999999999999999987652 267899999999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhcCCC------hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhhCCCccCchHHHHHH
Q 001064 432 FKEQNGDIDGARAAYQLVHTETSPG------LLEAIIKHANMERRLG--NLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQ 503 (1167)
Q Consensus 432 ~~e~~g~~~~A~~~~~~a~~~~~P~------~~~~~~~~a~~e~r~g--~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~ 503 (1167)
++.+.|+.+.|+++++++ .+.+|+ ...+.+.-+.+....| ++.+|..+|+++++..|. +.....+|.
T Consensus 145 i~L~~~r~d~A~k~l~~~-~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~---~~~~~lLln- 219 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNY-TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT---WKTQLGLLN- 219 (310)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS---HHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHH-HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC---cccHHHHHH-
Confidence 999999999999999997 677883 3333333232233444 899999999998877642 001122333
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh----------cCCCHHHHHHHHHhHhhCCChhHHHHHHHHHHHHhhcCCCCC
Q 001064 504 YSRFLHLVSRNAEKARQILVDSLDH----------VQLSKPLLEALIHFESIQSSPKQIDFLEQLVDKFLMSNSDSP 570 (1167)
Q Consensus 504 ~a~~~~~~~g~~~~Ar~i~~kal~~----------~p~~~~l~~~~~~~e~~~~~~~~~~~ar~l~eral~~~~~~~ 570 (1167)
. +...|++++|.++++.+++. .|+++..+.+.+.+....+. .+.++++++....|+++
T Consensus 220 ---~-~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 220 ---L-HLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-----DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp ---H-HHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-----TTHHHHHHHHHTTCCCH
T ss_pred ---H-HHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhCCCCh
Confidence 3 33499999999999988876 48899999888888877764 35788899988888877
No 389
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.74 E-value=1.7e-08 Score=113.24 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=61.0
Q ss_pred CCccEEEEec--CCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeee---Cc-
Q 001064 1029 GEVKSVYVRN--LPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLA---GR- 1101 (1167)
Q Consensus 1029 ~~~~~l~V~n--lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~---g~- 1101 (1167)
.+.++||||| |++++|+++|+++|++||.|++|.+ . . +||||||+|.+.++|++||+. ||..+. |+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~--~-~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--P-P----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC--C-T----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE--e-C----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 4678999999 5789999999999999999998643 2 1 579999999999999999987 898884 44
Q ss_pred -EeEEEec
Q 001064 1102 -QVYIEER 1108 (1167)
Q Consensus 1102 -~l~V~~~ 1108 (1167)
.|.|.+.
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4777665
No 390
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=5.7e-08 Score=89.89 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc--ChHHHHHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR--LPEIHLFAAR 431 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~--~~~l~~~~a~ 431 (1167)
...|..++..+...|++++|+..|++++...|.+..+|+.++.++...|++++|...|+++++.. |. ...+|..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555544 44 4445555555
Q ss_pred HHHHc-CCHHHHHHHHHHH
Q 001064 432 FKEQN-GDIDGARAAYQLV 449 (1167)
Q Consensus 432 ~~e~~-g~~~~A~~~~~~a 449 (1167)
++... |++++|+..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 55555 5555555555554
No 391
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.71 E-value=1.9e-08 Score=114.88 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
.+|+.++.++...|++++|+..|++++.+. |++..+|+.++.++...|++++|+..|+++ ++++|++..++..++.+.
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a-l~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKA-QKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT-TC----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHH
Confidence 489999999999999999999999999987 889999999999999999999999999998 789999999998888874
Q ss_pred -HHcCCHHHHHHHHHHHHHhhhC
Q 001064 469 -RRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 469 -~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
...+..++++.+|++++...|.
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Confidence 4456778899999999998764
No 392
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.71 E-value=6.4e-08 Score=95.98 Aligned_cols=73 Identities=8% Similarity=0.074 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh-------cCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIA-------CANYPEYW----IRYVLCMEASGSMDLAHNALARATHVFVKRLP 423 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~-------~p~~~~~w----~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~ 423 (1167)
..|.+.+..+.+.|++++|+..|++||.. +|.+..+| ++.+..+...|++++|+..|++++++. |.+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~-p~d~ 136 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI-EERK 136 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC-CCcH
Confidence 38999999999999999999999999999 99999999 999999999999999999999999988 5555
Q ss_pred HHHHH
Q 001064 424 EIHLF 428 (1167)
Q Consensus 424 ~l~~~ 428 (1167)
.+.-.
T Consensus 137 ~~~~~ 141 (159)
T 2hr2_A 137 GETPG 141 (159)
T ss_dssp SCCTT
T ss_pred HHHHH
Confidence 44433
No 393
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.70 E-value=5.3e-08 Score=96.37 Aligned_cols=95 Identities=14% Similarity=0.004 Sum_probs=81.4
Q ss_pred CCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhh--------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-
Q 001064 77 SAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQ--------DNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVG- 147 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~--------~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~- 147 (1167)
+.+++++..++++++++|.+.++|+.++..+..+.+ +.+++|+..|+++|+++|++..+|..++..+..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999998876521 23579999999999999999999999999998774
Q ss_pred ----------CHHHHHHHHHHHHhccCCCHHHHH
Q 001064 148 ----------SMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 148 ----------~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
++++|++.|++||.+.|.+...|.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 899999999999999998864443
No 394
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.70 E-value=2.6e-07 Score=91.34 Aligned_cols=139 Identities=11% Similarity=-0.073 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC------hH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKRL-----PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG------LL 458 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~-----~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~------~~ 458 (1167)
+|..++.++...|++++|...+++++.+.+... ..++..++.++...|++++|...|+++ +++.+. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT-LLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHHHhCCcHHHH
Confidence 344444444444444444444444444431110 124444555555555555555555554 222111 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcC
Q 001064 459 EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p 530 (1167)
.++..++.++...|++++|+.+|++++..............++..++.++.. .|++++|+..|+++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA-LGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888888888764322222334566777877665 8999999999999987654
No 395
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.70 E-value=2.9e-07 Score=88.08 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC---hHHHHHHH
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYP---EYWIRYVLCMEASGSMDLAHNALARATHVFVKRL---PEIHLFAA 430 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~---~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~---~~l~~~~a 430 (1167)
+...+..+...|++++|+..|++++...|.++ .+|+.++.++...|++++|+..|++++... |++ +.+++.++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 45556666677888888888888888777776 688888887878888888888888888776 566 66777778
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHH
Q 001064 431 RFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANME 468 (1167)
Q Consensus 431 ~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e 468 (1167)
.++...|++++|+..|+++ ++..|++..++.....+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQV-ATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHHSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-HHHCCCChHHHHHHHHHH
Confidence 8888888888888888877 566777776655554443
No 396
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.70 E-value=1.7e-08 Score=120.96 Aligned_cols=133 Identities=17% Similarity=0.147 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ 435 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~ 435 (1167)
.|..++..+.+.|++++|+..|++++..+|.+..+|..++.++...|++++|+..|++++++. |+++.+|+.+|.++..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344444555678999999999999999999999999999999999999999999999999987 8899999999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhhhC
Q 001064 436 NGDIDGARAAYQLVHTETSPGLLEAIIKHANM--ERRLGNLEDAFSLYE-----------QAIAIEKG 490 (1167)
Q Consensus 436 ~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~--e~r~g~~e~A~~~~~-----------kAl~~~~~ 490 (1167)
.|++++|+..|+++ ++++|++..+|..++.+ +.++|++++|+.+++ +++...+.
T Consensus 87 ~g~~~eA~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 87 LGKFRAALRDYETV-VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HTCHHHHHHHHHHH-HHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred cCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999998 78899999888888777 778899999999999 77777654
No 397
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.70 E-value=4.5e-08 Score=92.70 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=84.4
Q ss_pred CCCchHHHHHHHHHHh---CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 001064 77 SAMSGEEDRLWNIVKA---NSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 77 ~~~~~a~~~l~~~l~~---nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
|++++++..|+++++. +|.+..+|+.|+..+..+ +++++|+..|+++++.+|++..+|..++.++.+.|++++|+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL--GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 7899999999999999 699999999999999874 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHH
Q 001064 154 EVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~lw~ 171 (1167)
..|+++|...|.+.+++.
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999999877653
No 398
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.69 E-value=2.6e-07 Score=88.43 Aligned_cols=113 Identities=13% Similarity=-0.022 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHH
Q 001064 426 HLFAARFKEQNGDIDGARAAYQLVHTETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYA 502 (1167)
Q Consensus 426 ~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~---~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~ 502 (1167)
++..+..+...|++++|...|+++ ++..|++. .+|+.++.++.+.|++++|+.+|++++...|+. ...+.++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSF-LELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---DKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-HHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---cccHHHHH
Confidence 455566666677777777777776 55566665 567777777777777777777777777776532 12245566
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHHHHHHHhH
Q 001064 503 QYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLLEALIHFE 543 (1167)
Q Consensus 503 ~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~e 543 (1167)
.++.++.. .|++++|+.+|+++++.+|++.........+.
T Consensus 81 ~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 81 KLGLSQYG-EGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 66766555 77777777777777777777766655444443
No 399
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.68 E-value=1.9e-07 Score=88.92 Aligned_cols=115 Identities=14% Similarity=0.056 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC-------HH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS-------VD 168 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s-------~~ 168 (1167)
..+.|+.++..+.. .+++++|...|++++..+|.+..+|..++.++...|++++|+.+|++++...|.+ ..
T Consensus 3 ~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYK--KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 46788999998877 4799999999999999999999999999999999999999999999999998877 88
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 001064 169 IWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYM 217 (1167)
Q Consensus 169 lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~ 217 (1167)
+|..++..+. ..|++++|+..|++++...+ + ..++..+......
T Consensus 81 ~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~-~---~~~~~~l~~~~~~ 124 (131)
T 1elr_A 81 AYARIGNSYF-KEEKYKDAIHFYNKSLAEHR-T---PDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHhCC-C---HHHHHHHHHHHHH
Confidence 9999999888 68999999999999999654 2 4555555554433
No 400
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=2e-06 Score=95.70 Aligned_cols=171 Identities=11% Similarity=-0.002 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh------HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCCh----
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP------EIHLFAARFKEQNGDIDGARAAYQLVHTETSPGL---- 457 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~------~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~---- 457 (1167)
...+...+..+...|++++|...+.++++.. +... ..++..+.++...|++++|...|+++ +++.+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~ 152 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKL-LNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH-HTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCchH
Confidence 3456666777778999999999999999875 3322 33455677788889999999999998 4443322
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC--
Q 001064 458 --LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS-- 532 (1167)
Q Consensus 458 --~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~-~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~-- 532 (1167)
..+|...+.++..+|++++|+.+|++|+........... ...++..+|.++.. .|++++|..+|+++++..+..
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHhcCc
Confidence 568899999999999999999999999966432111111 12578888888776 999999999999999875321
Q ss_pred ----HHHHHHHHHhHhhCCChhHHHHH-HHHHHHHhh
Q 001064 533 ----KPLLEALIHFESIQSSPKQIDFL-EQLVDKFLM 564 (1167)
Q Consensus 533 ----~~l~~~~~~~e~~~~~~~~~~~a-r~l~eral~ 564 (1167)
..++...+......++. +.+ ...|++++.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~---~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYE---EAEIEDAYKKASF 265 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHH
Confidence 35555555555555543 334 555666644
No 401
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.65 E-value=6.6e-08 Score=115.88 Aligned_cols=121 Identities=9% Similarity=-0.053 Sum_probs=105.8
Q ss_pred cccccccCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 001064 69 AGQELVDGSAMSGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGS 148 (1167)
Q Consensus 69 ~~~~~~~~~~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~ 148 (1167)
.+..+...+++++|++.|+++++.+|.+..+|..++..+..+ +++++|+..|+++++.+|.+..+|..++.++..+|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344455558999999999999999999999999999999885 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHH--HHhhcCCHHHHHHHHH
Q 001064 149 MDKVVEVYERAVQGVTYSVDIWLHYCIF--AINTYGDPETIRRLFE 192 (1167)
Q Consensus 149 ~e~A~~l~eraL~~~P~s~~lw~~ya~~--~~~~~~~~~~Ar~~fe 192 (1167)
+++|++.|+++|+..|.+.++|..++.. +. ..+++++|+..|+
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIV-KQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH-HHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHhcccc
Confidence 9999999999999999999999888776 55 4688999999999
No 402
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=2.9e-07 Score=95.64 Aligned_cols=138 Identities=13% Similarity=0.058 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--c---
Q 001064 352 TELENWHNYLDFIERDGDFNKVVKLYERCLIAC------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVFV--K--- 420 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~------p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--p--- 420 (1167)
.....|..++.++...|++++|+..|++++... +....+|..++.++...|++++|...+++++.+.. +
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 456788889999999999999999999999943 33456899999999999999999999999999842 1
Q ss_pred -cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC---CC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 421 -RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS---PG---LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 421 -~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~---P~---~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
....++..++.++...|++++|+..|++++ ++. .+ ...++..++.++...|++++|+.+|++++.+...
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSL-VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 234567788999999999999999999973 321 11 1234678888999999999999999999998753
No 403
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.62 E-value=1.2e-07 Score=89.05 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=60.4
Q ss_pred CccEEEEecCCCCC----------CHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCee
Q 001064 1030 EVKSVYVRNLPSTV----------TAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQL 1098 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i 1098 (1167)
+.+.|.+.|+=..- -+++|++.|++||.|.+|.| .++ .++|||||+|.+.++|.+|+.. ||..|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i-~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV-DKN----SAQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE-CTT----CTTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE-ecC----CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34788888873221 13588999999999999754 222 2589999999999999999987 99999
Q ss_pred eCcEeEEEecc
Q 001064 1099 AGRQVYIEERR 1109 (1167)
Q Consensus 1099 ~g~~l~V~~~r 1109 (1167)
+||.|+|++..
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999875
No 404
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.61 E-value=2e-07 Score=107.77 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhc----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIAC----------------ANYPEYWIRYVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~----------------p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
..|...+..+.+.|++++|+..|+++|..+ +....+|..++.++...|++++|+..|++++++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 457777777788899999999999999843 3333444444444444444444444444444443
Q ss_pred hccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC
Q 001064 419 VKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN 473 (1167)
Q Consensus 419 ~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~ 473 (1167)
|+++.+|+.++.++...|++++|+..|+++ ++++|++..++..++.++..+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A-l~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKA-QEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444 34444444444444444433333
No 405
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=1.1e-07 Score=83.14 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=60.3
Q ss_pred CccEEEEecCCC----CCCH----HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCc
Q 001064 1030 EVKSVYVRNLPS----TVTA----FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGR 1101 (1167)
Q Consensus 1030 ~~~~l~V~nlp~----~~t~----~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~ 1101 (1167)
+..+|+|.-++. +.-. .+|.+.|++||.|..+++ +. +.+||+|.+.++|.+||+++|..++||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~-~~--------d~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRF-VE--------DKMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEE-CS--------SSEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEE-ec--------CCEEEEECChHHHHHHHhcCCeEeCCe
Confidence 346788877652 2223 578999999999998775 32 238999999999999999999999999
Q ss_pred EeEEEeccCCCC
Q 001064 1102 QVYIEERRPNTG 1113 (1167)
Q Consensus 1102 ~l~V~~~r~~~~ 1113 (1167)
.|+|..+++...
T Consensus 77 ~LkV~lkt~dW~ 88 (91)
T 2dnr_A 77 TITIALKSPSGP 88 (91)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeCCCCcc
Confidence 999999987643
No 406
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.60 E-value=8.2e-07 Score=98.88 Aligned_cols=164 Identities=9% Similarity=0.021 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhh--HHHHHH-HHHHHHHcCChHHHHHHHHHHHHhcCCC------HHH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTE--LENWHN-YLDFIERDGDFNKVVKLYERCLIACANY------PEY 390 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~--~~~W~~-y~~~~e~~g~~~~a~~~yeral~~~p~~------~~~ 390 (1167)
..+...+++++++..|+++++. .+..+.. .-.|.. .+.++...+++++|+..|++++...... ..+
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKK-----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3456778999999999999872 1223322 233544 5666667789999999999999864332 237
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFV------KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLL 458 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~------p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~ 458 (1167)
+..++.++...|++++|...|+++++... +....++..++.++...|++++|+..|+++ +++. ....
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a-l~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA-IEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHcCcHHHHH
Confidence 89999999999999999999999997542 223458888999999999999999999998 4443 2337
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhh
Q 001064 459 EAIIKHANMERRLG-NLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 459 ~~~~~~a~~e~r~g-~~e~A~~~~~kAl~~~~ 489 (1167)
.+|...+.++.++| ++++|...|++|+.+..
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 88999999999999 47999999999999875
No 407
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.59 E-value=1.3e-07 Score=93.52 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=74.7
Q ss_pred HcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001064 435 QNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGN----------LEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 504 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~----------~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~ 504 (1167)
+.+.+++|++.|+++ ++++|++.++|+.|+.++..+++ +++|+..|++||+++|+. +.+|..+
T Consensus 14 r~~~feeA~~~~~~A-i~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------~~A~~~L 86 (158)
T 1zu2_A 14 RILLFEQIRQDAENT-YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------DEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHhHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc------HHHHHHH
Confidence 344566677777776 56677777777777776666655 458999999999988643 6678888
Q ss_pred HHHHHHHh-----------CCHHHHHHHHHHHHhhcCCCHHHHHHHHHh
Q 001064 505 SRFLHLVS-----------RNAEKARQILVDSLDHVQLSKPLLEALIHF 542 (1167)
Q Consensus 505 a~~~~~~~-----------g~~~~Ar~i~~kal~~~p~~~~l~~~~~~~ 542 (1167)
+..+.. . |++++|.+.|++||+++|++..++.++...
T Consensus 87 G~ay~~-lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 87 GNAYTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHH-hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 877665 4 589999999999999999998776554433
No 408
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.58 E-value=5.3e-07 Score=104.19 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------hhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 001064 388 PEYWIRYVLCMEASGSMDLAHNALARATHV---------------FVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTE 452 (1167)
Q Consensus 388 ~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~---------------~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~ 452 (1167)
...|...+..+...|++++|+..|++|+++ ..+....+|+.++.++.+.|++++|+..|+++ ++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a-l~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA-LE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH-HH
Confidence 356888999999999999999999999983 22567789999999999999999999999998 78
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHH
Q 001064 453 TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQ 520 (1167)
Q Consensus 453 ~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~ 520 (1167)
++|++..+|+.++.++.++|++++|+..|++|+++.|.+ +.++..++.++.. .++.+++.+
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~------~~~~~~l~~~~~~-~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED------KAIQAELLKVKQK-IKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999998643 6677777777665 666666544
No 409
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.57 E-value=2.3e-07 Score=87.71 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCC---ChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPL---SVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 401 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pl---d~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~ 401 (1167)
.+++++|+..|+++|+ + +|.....|..++..+...|++++|+..|++++..+|.++.+|+.++.++...
T Consensus 3 ~g~~~~A~~~~~~al~--------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA--------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL 74 (117)
T ss_dssp ----CCCHHHHHHHHS--------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH--------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc
Confidence 3556677777888776 4 5777777888888777888888888888888888888888888888888778
Q ss_pred CCHHHHHHHHHHHHHhhhccChHHHH
Q 001064 402 GSMDLAHNALARATHVFVKRLPEIHL 427 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~p~~~~l~~ 427 (1167)
|++++|+..|++++... |+++.+..
T Consensus 75 g~~~~A~~~~~~al~~~-p~~~~~~~ 99 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAET-SDDETIQS 99 (117)
T ss_dssp TCHHHHHHHHHHHHHHH-CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 88888888888888776 56665543
No 410
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=98.55 E-value=1.5e-07 Score=90.92 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=66.5
Q ss_pred chhHhHHHHHHHHhhhcCc-----ccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccC-CC
Q 001064 719 AQVGSYFVGQYYQVLQQQP-----DLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSW-NG 792 (1167)
Q Consensus 719 ~~vg~~Fv~~YY~~l~~~p-----~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~-~~ 792 (1167)
.+.+..||+.||..|+..+ ..|..|+...+ -+.++|..+.....-.+| +..+++.+.++|+++|||-.. .|
T Consensus 16 ~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~-~Ii~NG~p~a~p~~fqei--w~~Q~p~T~hel~S~D~HVIngsg 92 (184)
T 1of5_B 16 AQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNC-RIIFNATPFAQATVFLQM--WQNQVVQTQHALTGVDYHAIPGSG 92 (184)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-C-CEEETTEEESCHHHHHHH--HHHHSCCCEEEEEEEEEEEETTTT
T ss_pred hhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCc-eEEECCeEcCCHHHHHHH--HHhcCCCceEEEEeEEEEEECCCC
Confidence 4578999999999999987 77888876654 445899987555444443 555899889999999999865 35
Q ss_pred ceEEEEEEEEEecCccccceeEEEEEEeee
Q 001064 793 GVLVMVSGSVKTKEFCRRRKFVQTFFLAPQ 822 (1167)
Q Consensus 793 ~i~v~v~G~~~~~~~~~~~~F~q~F~L~~~ 822 (1167)
+|+|+|+|.|..++.. .-+|.++|+|.|.
T Consensus 93 sivv~VsgkVRFdEsg-rd~fgEtfvLvpn 121 (184)
T 1of5_B 93 TLICNVNCKVRFDESG-RDKMGQDATVPIQ 121 (184)
T ss_dssp EEEEEEEEEEECC-----------------
T ss_pred eEEEEEEEEEEECCCC-CCCCCCeEEECCC
Confidence 7999999999998653 3599999999977
No 411
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=2.3e-07 Score=87.04 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=62.9
Q ss_pred CCCCccEEEEecCCCC-CCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECC-HHHHHHHHHh-C--CCeeeCc
Q 001064 1027 DEGEVKSVYVRNLPST-VTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFED-ISGVQNAIQA-S--PIQLAGR 1101 (1167)
Q Consensus 1027 ~~~~~~~l~V~nlp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~-~~~a~~Al~~-~--~~~i~g~ 1101 (1167)
.-..|..|||+||+.+ ++.++|+++|++||.|+.|.+ ++++. .|||.|.+ ..+|..|+.. + +..|.|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 4457899999999999 999999999999999999875 43332 69999999 7889988876 3 8999999
Q ss_pred EeEEEe
Q 001064 1102 QVYIEE 1107 (1167)
Q Consensus 1102 ~l~V~~ 1107 (1167)
.++++.
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 888864
No 412
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.52 E-value=8.5e-07 Score=83.31 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 001064 80 SGEEDRLWNIVKANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERA 159 (1167)
Q Consensus 80 ~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~era 159 (1167)
..++..|+++++.+|.+..+|+.|+..+... +++++|+..|++++..+|.+..+|..++.++...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEH--EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567788888888888888888888888764 78888888888888888888888888888888888888888888888
Q ss_pred HhccCC
Q 001064 160 VQGVTY 165 (1167)
Q Consensus 160 L~~~P~ 165 (1167)
+...|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 887653
No 413
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.4e-06 Score=102.32 Aligned_cols=207 Identities=9% Similarity=0.030 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccC------CCC---hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH---
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVK------PLS---VTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPE--- 389 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~------pld---~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~--- 389 (1167)
+...+++.+|+..|.++++...-... ... .........++..+...|++++++.+|.+++...+....
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 45678899999999999873110000 000 111234677888889999999999999999987655433
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-----CCC
Q 001064 390 ---YWIRYVLCMEASGSMDLAHNALARATHVFVKR-----LPEIHLFAARFKEQNGDIDGARAAYQLVHTET-----SPG 456 (1167)
Q Consensus 390 ---~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~-----~P~ 456 (1167)
+...++.++...|+.+.|..++++++.+.... ...++..++.++...|++++|..++++++... .+.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 33334444455789999999999999876322 35688889999999999999999999874321 344
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Q 001064 457 LLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT-LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV 529 (1167)
Q Consensus 457 ~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~-~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~ 529 (1167)
..++++..+.++..+|++++|+.+|++++...+...+.+. ...++...+.+. ...|++++|...|.++++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH-CEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999998754322111 123455555554 44899999999999998753
No 414
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.49 E-value=1e-06 Score=86.87 Aligned_cols=135 Identities=14% Similarity=0.032 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-----C
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYP------EYWIRYVLCMEASGSMDLAHNALARATHVFVKR-----L 422 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~------~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-----~ 422 (1167)
...|..++..+...|++++|+..|++++...+... .++..++.++...|++++|...+++++.+.... .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888888899999999999999998855322 378889999999999999999999999977321 2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHTETS------PGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~------P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~ 489 (1167)
..++..++.++...|++++|...|+++ +++. +....++..++.++..+|++++|+.+|++++++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKH-LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999997 3331 22345678889999999999999999999998864
No 415
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.43 E-value=1.4e-06 Score=81.75 Aligned_cols=83 Identities=18% Similarity=0.079 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 117 KIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 117 ~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
.++..|+++++.+|++..+|..++.++...|++++|+..|++++...|.+...|+.++..+. ..|++++|+..|++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999998 68999999999999998
Q ss_pred hcCC
Q 001064 197 YVGT 200 (1167)
Q Consensus 197 ~~g~ 200 (1167)
..+.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6543
No 416
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=3.2e-05 Score=90.72 Aligned_cols=195 Identities=11% Similarity=0.047 Sum_probs=144.1
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccCh----
Q 001064 365 ERDGDFNKVVKLYERCLIACANYP-----------------EYWIRYVLCMEASGSMDLAHNALARATHVFVKRLP---- 423 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~-----------------~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~---- 423 (1167)
.+.|++++|+..|.+++...+... .++..++.++...|++++|...|.+++... +...
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 93 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM-MQFAKSKT 93 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHccchHH
Confidence 467899999999999999876543 357889999999999999999999999876 3322
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCc
Q 001064 424 --EIHLFAARFKEQNGDIDGARAAYQLVHT-----ETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQT 496 (1167)
Q Consensus 424 --~l~~~~a~~~e~~g~~~~A~~~~~~a~~-----~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~ 496 (1167)
.+....+.+....|+++.|..++++++. ...+....++..++.++...|++++|..++++++.......+...
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 2344456666678999999999998631 113345678899999999999999999999999998765444455
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc---CCCHH----HHHHHHHhHhhCCChhHHHHHHHHHHHHhh
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDHV---QLSKP----LLEALIHFESIQSSPKQIDFLEQLVDKFLM 564 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~---p~~~~----l~~~~~~~e~~~~~~~~~~~ar~l~eral~ 564 (1167)
...++...++++.. .|++++|+.+|++++... ++... ++..+..+....++ .+.+...|..++.
T Consensus 174 ~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHK-LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD---YKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHH
Confidence 56778888888766 999999999999999853 44433 33333444444443 4445555555543
No 417
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=1.1e-06 Score=77.30 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=58.7
Q ss_pred CccEEEEecCCCC------CCH---HHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeC
Q 001064 1030 EVKSVYVRNLPST------VTA---FEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG 1100 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~------~t~---~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g 1100 (1167)
+..+|+|.-++.. ..+ .+|.+.|++||.|..+++ +.+ -+||+|.+.++|.+||+++|..++|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~-v~d--------~~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRI-NQG--------QMLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEE-ETT--------EEEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEE-ecC--------cEEEEEcChHHHHHHHhcCCeeeCC
Confidence 4578999888643 221 468999999999988775 322 2999999999999999999999999
Q ss_pred cEeEEEeccC
Q 001064 1101 RQVYIEERRP 1110 (1167)
Q Consensus 1101 ~~l~V~~~r~ 1110 (1167)
|.|+|..+.+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998754
No 418
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.25 E-value=5.3e-06 Score=73.55 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHH
Q 001064 94 SSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHY 173 (1167)
Q Consensus 94 P~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~y 173 (1167)
+.+...|+.++..+... +++++|...|++++..+|.+..+|..++.++.+.|++++|+..|++++...|.+...|..+
T Consensus 6 ~~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp CHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34678899999988874 7999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHH
Q 001064 174 CIFAI 178 (1167)
Q Consensus 174 a~~~~ 178 (1167)
+..+.
T Consensus 84 ~~~~~ 88 (91)
T 1na3_A 84 GNAKQ 88 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 419
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.24 E-value=1.7e-06 Score=79.30 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=60.1
Q ss_pred hCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccC
Q 001064 92 ANSSDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVT 164 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P 164 (1167)
.+|.+..+|+.|+..+... +++++|+..|+++++.+|++..+|..++.++...|++++|++.|++++.+.|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH--DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 4788999999999988874 7899999999999999999999999999999999999999999999988754
No 420
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=9.3e-07 Score=81.84 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCC------HHH
Q 001064 96 DFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYS------VDI 169 (1167)
Q Consensus 96 d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s------~~l 169 (1167)
+.++|+.++..+.. .+++++|...|+++++.+|.+..+|..++.++.+.|++++|++.|+++|...|.+ ..+
T Consensus 3 ~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK--QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 46789999999887 4899999999999999999999999999999999999999999999999999998 777
Q ss_pred HHHHHHHHHhhcCCHHHHHH
Q 001064 170 WLHYCIFAINTYGDPETIRR 189 (1167)
Q Consensus 170 w~~ya~~~~~~~~~~~~Ar~ 189 (1167)
++..+..+. ..|+.+.+..
T Consensus 81 ~~~~~~~~~-~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQG-AVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHH-HHHCCCCCSS
T ss_pred HHHHHHHHH-HHHhHhhhHh
Confidence 777666665 3444444433
No 421
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.21 E-value=9e-05 Score=79.94 Aligned_cols=86 Identities=22% Similarity=0.242 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH-cCCHHH
Q 001064 370 FNKVVKLYERCLIACANYPE--YWIRYVLCMEAS-----GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ-NGDIDG 441 (1167)
Q Consensus 370 ~~~a~~~yeral~~~p~~~~--~w~~ya~~l~~~-----g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~-~g~~~~ 441 (1167)
..+++.+++|++..+|.+.+ +|..++.++... |+.++|+..|+||+++.|..+...+++|++++.. .|+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34677778888888777443 777777766653 6666666666666666622336666666666655 366666
Q ss_pred HHHHHHHHhhhcCCC
Q 001064 442 ARAAYQLVHTETSPG 456 (1167)
Q Consensus 442 A~~~~~~a~~~~~P~ 456 (1167)
++..++++ +..+|.
T Consensus 259 a~~~L~kA-L~a~p~ 272 (301)
T 3u64_A 259 FDEALDRA-LAIDPE 272 (301)
T ss_dssp HHHHHHHH-HHCCGG
T ss_pred HHHHHHHH-HcCCCC
Confidence 66666665 444443
No 422
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.16 E-value=1.7e-05 Score=70.15 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHH
Q 001064 353 ELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARF 432 (1167)
Q Consensus 353 ~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~ 432 (1167)
....|..++..+...|++++|+.+|++++..+|.+..+|+.++.++...|++++|+..|++++.+. |.++.++..++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345666677766777777777777777777777777777777777777777777777777777765 5666666666665
Q ss_pred HHHc
Q 001064 433 KEQN 436 (1167)
Q Consensus 433 ~e~~ 436 (1167)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 423
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.4e-06 Score=80.59 Aligned_cols=91 Identities=10% Similarity=0.107 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccC------hHHHH
Q 001064 354 LENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRL------PEIHL 427 (1167)
Q Consensus 354 ~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~------~~l~~ 427 (1167)
...|..++..+...|++++|+..|++++...|.++.+|+.++.++...|++++|+..|++++.+. |++ ..+++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHH
Confidence 45566667666677777777777777777777777777777777777777777777777777765 454 55555
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 001064 428 FAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 428 ~~a~~~e~~g~~~~A~~~ 445 (1167)
..+..+...|+++.|+..
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 556555555555444443
No 424
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.09 E-value=3e-05 Score=83.62 Aligned_cols=121 Identities=12% Similarity=0.067 Sum_probs=94.4
Q ss_pred hCCCCHHHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----CCHHHHHHH
Q 001064 92 ANSSDFSAWTALLEETEKL---------AQDNIVKIRRVYDAFLAEFPL--CYGYWKKYADHEARV-----GSMDKVVEV 155 (1167)
Q Consensus 92 ~nP~d~~aw~~L~~~~~~~---------~~~~~~~ar~~ye~~l~~~P~--~~~~W~~~a~~e~~~-----~~~e~A~~l 155 (1167)
.+|.|.++++=++...... .-..+..|+..++++|+++|. +..+|..++.+|.+. |+.++|++.
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 4577777766444333220 014678899999999999999 677999999999995 999999999
Q ss_pred HHHHHhccCCC-HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHH
Q 001064 156 YERAVQGVTYS-VDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD-YLSFPLWDKYIE 213 (1167)
Q Consensus 156 ~eraL~~~P~s-~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d-~~s~~lw~~y~~ 213 (1167)
|+|+|++.|.. .+.++.|+.++....++.+.+++.+++++...+.. +. ..+++...+
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~-~~lan~~~q 285 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH-NKLLVILSQ 285 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS-CHHHHHHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC-hhHHHHHHH
Confidence 99999999975 99999999999844699999999999999944332 22 355554444
No 425
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.08 E-value=9e-06 Score=73.69 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=73.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Q 001064 101 TALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYG-YWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAIN 179 (1167)
Q Consensus 101 ~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~-~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~ 179 (1167)
+.++..+.. .+++++|+..|+++++.+|.+.. +|..++.++...|++++|++.|+++|...|.+...|..
T Consensus 4 ~~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 4 LKTIKELIN--QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHH--HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 345555554 47899999999999999999999 99999999999999999999999999999999888743
Q ss_pred hcCCHHHHHHHHHHHHHhcCCC
Q 001064 180 TYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 180 ~~~~~~~Ar~~feral~~~g~d 201 (1167)
+.+.++...|++++...|.+
T Consensus 75 --~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHHCC
T ss_pred --HHHHHHHHHHHHHhccCccc
Confidence 22566777888877766554
No 426
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.04 E-value=1.2e-05 Score=73.39 Aligned_cols=71 Identities=11% Similarity=0.092 Sum_probs=64.5
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcC
Q 001064 128 EFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVG 199 (1167)
Q Consensus 128 ~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g 199 (1167)
.+|++..+|..++.++...|++++|+..|+++|...|.+..+|..++..+. ..|++++|+..|++++...+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhh
Confidence 479999999999999999999999999999999999999999999999998 78999999999999998543
No 427
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.96 E-value=9.9e-06 Score=86.22 Aligned_cols=66 Identities=30% Similarity=0.340 Sum_probs=56.5
Q ss_pred CHHHHHHHHhcCCCceeeeEeee---cCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeEEEecc
Q 001064 1044 TAFEIEEEFQNFGRIKPDGVFVR---NRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVYIEERR 1109 (1167)
Q Consensus 1044 t~~~l~~~F~~~G~i~~v~i~~~---~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~V~~~r 1109 (1167)
.+++|++.|++||.|.++.|... ++.+|+++||+||+|.+.++|.+|+.. +|..++||.|.|++..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 46789999999999999876321 234568999999999999999999987 8999999999998754
No 428
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.95 E-value=2e-05 Score=71.36 Aligned_cols=88 Identities=15% Similarity=0.124 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhccChH-HHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHc
Q 001064 393 RYVLCMEASGSMDLAHNALARATHVFVKRLPE-IHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRL 471 (1167)
Q Consensus 393 ~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~-l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~ 471 (1167)
..+..+...|++++|+..|+++++.. |+++. +|+.++.++...|++++|+..|+++ ++++|++..+|..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA-IELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCTTSTHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCCcHHHHHH--------
Confidence 33444455566666666666666554 55555 6666666666666666666666665 4556665555432
Q ss_pred CCHHHHHHHHHHHHHhhhC
Q 001064 472 GNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 472 g~~e~A~~~~~kAl~~~~~ 490 (1167)
+.+.++...|++++...|+
T Consensus 75 ~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHHhccCcc
Confidence 3345556666666655553
No 429
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.91 E-value=6.4e-05 Score=89.52 Aligned_cols=137 Identities=12% Similarity=-0.007 Sum_probs=88.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhhh----ccC---hHHHHHHHHHHHHcCCHHHHHHHHHHHh----hhcCCC---hHHHHHH
Q 001064 398 MEASGSMDLAHNALARATHVFV----KRL---PEIHLFAARFKEQNGDIDGARAAYQLVH----TETSPG---LLEAIIK 463 (1167)
Q Consensus 398 l~~~g~~e~A~~vl~rA~~~~~----p~~---~~l~~~~a~~~e~~g~~~~A~~~~~~a~----~~~~P~---~~~~~~~ 463 (1167)
+..+|++++|..+|++++++.. +++ ..++..++.++..+|++++|+.+|++++ ..+-|+ ....+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3356677777777777766542 222 2345556666777777777777777652 122344 4455888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhh---CCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHH
Q 001064 464 HANMERRLGNLEDAFSLYEQAIAIEK---GKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 464 ~a~~e~r~g~~e~A~~~~~kAl~~~~---~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
++.++..+|++++|+.+|++|+++.. +.+| +....+...++..... .+.+++|..+|.++++..-++..+|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~~e-~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH-PITKDLEAMRMQTEME-LRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999764 2222 2223344455555433 7889999999999988776666666
No 430
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.86 E-value=5e-05 Score=68.43 Aligned_cols=78 Identities=8% Similarity=-0.037 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHH
Q 001064 93 NSSDFSAWTALLEETEKLAQD-NIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWL 171 (1167)
Q Consensus 93 nP~d~~aw~~L~~~~~~~~~~-~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~ 171 (1167)
+|.|.+.|..++..+.....+ ...+++.+|+++|+.+|+|...++.++..+.+.|++++|+..|+++|...|. +.|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~--~~~~ 79 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP--NLDR 79 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT--TCCH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccH
Confidence 789999999999988643211 2589999999999999999999999999999999999999999999999887 4454
Q ss_pred H
Q 001064 172 H 172 (1167)
Q Consensus 172 ~ 172 (1167)
.
T Consensus 80 ~ 80 (93)
T 3bee_A 80 V 80 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 431
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00047 Score=69.97 Aligned_cols=133 Identities=13% Similarity=0.172 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHHHh---CCCC-HHHHHHHHHHHHHh---CCH---HHHH-HHHHHHHhccCC---------CHHHHHH
Q 001064 113 DNIVKIRRVYDAFLAE---FPLC-YGYWKKYADHEARV---GSM---DKVV-EVYERAVQGVTY---------SVDIWLH 172 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~---~P~~-~~~W~~~a~~e~~~---~~~---e~A~-~l~eraL~~~P~---------s~~lw~~ 172 (1167)
..+.+.|+.||+-|.. .-++ .+.|..|+.+.... |.. .... .+++||++.+-+ -..+|+.
T Consensus 6 ~~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~ 85 (202)
T 3esl_A 6 SQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIW 85 (202)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 3567889999998877 3333 48999999987643 332 2244 799999986532 3789999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 001064 173 YCIFAINTYGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 249 (1167)
Q Consensus 173 ya~~~~~~~~~~~~Ar~~feral~~-~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~ 249 (1167)
|+++.. .++....+.+|..+... +|.. ...+|..|+.++...|++.+|..||+++++..-.-++.+-..+..|
T Consensus 86 Ya~~~~--~~~~~~p~~if~~L~~~~IG~~--~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F 159 (202)
T 3esl_A 86 YINLFL--SNNFHESENTFKYMFNKGIGTK--LSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNY 159 (202)
T ss_dssp HHHHHS--TTCHHHHHHHHHHHHHHTSSTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred HHHhhc--ccccCCHHHHHHHHHHCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 999863 34467889999988863 4554 6789999999999999999999999999996333334444444444
No 432
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.72 E-value=0.00043 Score=67.31 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=95.2
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH----cCCHHHHH
Q 001064 368 GDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGAR 443 (1167)
Q Consensus 368 g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~----~g~~~~A~ 443 (1167)
+|+++|+.+|+++.... +++.. ++.++...+..++|+..|+++++. .++..++.++.++.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 36789999999999874 34444 888777777889999999999984 578999999999998 89999999
Q ss_pred HHHHHHhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 001064 444 AAYQLVHTETSPGLLEAIIKHANMERR----LGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 444 ~~~~~a~~~~~P~~~~~~~~~a~~e~r----~g~~e~A~~~~~kAl~~~ 488 (1167)
..|+++ .+. ++...++.++.++.. .+++++|+..|++|.+..
T Consensus 82 ~~~~~A-a~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKA-CGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHH-HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999998 343 778899999999988 899999999999999875
No 433
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.69 E-value=0.0017 Score=77.64 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhhhccChHH
Q 001064 356 NWHNYLDFIERDGDFNKVVKLYERCLIA-CANYPEYWIRYVLCMEASG---------SMDLAHNALARATHVFVKRLPEI 425 (1167)
Q Consensus 356 ~W~~y~~~~e~~g~~~~a~~~yeral~~-~p~~~~~w~~ya~~l~~~g---------~~e~A~~vl~rA~~~~~p~~~~l 425 (1167)
++...++.+-+.|+.++|+.+|++.... +.-+...|..++..+...+ .+++|..+|++....-..-+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666778888999999999999998876 3445566777666554433 36788899988766433335667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh-cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHH
Q 001064 426 HLFAARFKEQNGDIDGARAAYQLVHTE-TSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQY 504 (1167)
Q Consensus 426 ~~~~a~~~e~~g~~~~A~~~~~~a~~~-~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~ 504 (1167)
|..+...+.+.|++++|..+|++.... +.| +...|...+..+.+.|++++|..+|++..+..- .++ ...|..+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~----~Pd-~~ty~~L 181 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEV----VPE-EPELAAL 181 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC----CCC-HHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCC-HHHHHHH
Confidence 778888889999999999999986322 345 456788888888999999999999999887532 122 4567778
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 505 SRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 505 a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
...+.+ .|+.++|.++|++..+.
T Consensus 182 i~~~~~-~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 182 LKVSMD-TKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHhh-CCCHHHHHHHHHHHHHh
Confidence 777666 99999999999998764
No 434
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.64 E-value=0.00052 Score=77.17 Aligned_cols=136 Identities=12% Similarity=0.042 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHHH--HHcC---ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cC-CH----HHHHHHHHHH--HH
Q 001064 352 TELENWHNYLDFI--ERDG---DFNKVVKLYERCLIACANYPEYWIRYVLCMEA---SG-SM----DLAHNALARA--TH 416 (1167)
Q Consensus 352 ~~~~~W~~y~~~~--e~~g---~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~---~g-~~----e~A~~vl~rA--~~ 416 (1167)
.+++.|..|+.-. ...+ +..+|+.+|++|+..+|.+..+|-.++.++.. .+ .. ......+..+ +.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 3455666665422 2223 35789999999999999999877765544421 11 11 1111222221 12
Q ss_pred hhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC
Q 001064 417 VFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG 490 (1167)
Q Consensus 417 ~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~ 490 (1167)
. .+..+.+|..++..+...|++++|+..++++ +.++|+ ...|..++.++.-.|+.++|...|++|+.+.|.
T Consensus 272 ~-~~~~a~~~~alal~~l~~gd~d~A~~~l~rA-l~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 272 E-LNNLSIIYQIKAVSALVKGKTDESYQAINTG-IDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp G-GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred c-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2 2678888888888888889999999999999 788975 567788888888999999999999999999863
No 435
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.61 E-value=0.0015 Score=73.47 Aligned_cols=153 Identities=9% Similarity=0.007 Sum_probs=110.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hC-----CHHHHHH
Q 001064 86 LWNIVKANSSDFSAWTALLEETEKLA---QDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEAR---VG-----SMDKVVE 154 (1167)
Q Consensus 86 l~~~l~~nP~d~~aw~~L~~~~~~~~---~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~---~~-----~~e~A~~ 154 (1167)
...+...-|.+.++|..+.+-...+. ...+.+|+.+|+++++++|++..+|-.++..+.- .+ .......
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 34566778999999997776655432 3567899999999999999998877765555431 11 1112222
Q ss_pred HHHH--HHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001064 155 VYER--AVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRIL 232 (1167)
Q Consensus 155 l~er--aL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l 232 (1167)
.+++ ++...|.+..+|..++-... ..|+++.|+..++||+...+ +...|..++......|++++|...|.+++
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln~----s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLEM----SWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3332 22455888888887776665 46999999999999999642 45667777788888999999999999999
Q ss_pred hcchhhHHHHH
Q 001064 233 ENPIQQLDRYF 243 (1167)
Q Consensus 233 ~~p~~~~~~~~ 243 (1167)
.+.|.....+|
T Consensus 338 rL~P~~~t~~~ 348 (372)
T 3ly7_A 338 NLRPGANTLYW 348 (372)
T ss_dssp HHSCSHHHHHH
T ss_pred hcCCCcChHHH
Confidence 98776543333
No 436
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.58 E-value=0.001 Score=64.54 Aligned_cols=109 Identities=10% Similarity=-0.059 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----
Q 001064 325 AKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEA---- 400 (1167)
Q Consensus 325 ~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~---- 400 (1167)
.+++.+|+..|+++++ .+.... . ++.++...+.+++|+.+|+++... .++..++.++.++..
T Consensus 8 ~~d~~~A~~~~~~aa~--------~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 8 KKDLKKAIQYYVKACE--------LNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYV 73 (138)
T ss_dssp HHHHHHHHHHHHHHHH--------TTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred ccCHHHHHHHHHHHHc--------CCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence 3567788888999987 332222 2 777777778888999999999987 789999999999988
Q ss_pred cCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Q 001064 401 SGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQ----NGDIDGARAAYQLVH 450 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~----~g~~~~A~~~~~~a~ 450 (1167)
.++.++|+..|++|++. .++..++.++.++.. .+|+++|+..|+++.
T Consensus 74 ~~d~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp CCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 78999999999999984 578899999999998 899999999999983
No 437
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.56 E-value=0.00054 Score=61.59 Aligned_cols=72 Identities=11% Similarity=-0.117 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCC
Q 001064 129 FPLCYGYWKKYADHEARVGS---MDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTD 201 (1167)
Q Consensus 129 ~P~~~~~W~~~a~~e~~~~~---~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d 201 (1167)
+|.+..+|..|+..+...++ .++|+.+|+++|+.+|.++..++.++..++ ..|++++|+..|++++...|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999976655 799999999999999999999999999999 6899999999999999965553
No 438
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0019 Score=65.59 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHc---CCh---HHHH-HHHHHHHHhcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001064 352 TELENWHNYLDFIERD---GDF---NKVV-KLYERCLIACAN---------YPEYWIRYVLCMEASGSMDLAHNALARAT 415 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~---g~~---~~a~-~~yeral~~~p~---------~~~~w~~ya~~l~~~g~~e~A~~vl~rA~ 415 (1167)
+-++.|..|+.|.+.. |.. .... .+++||+...-+ +..+|+.|+.++ ..+...++..+|.-..
T Consensus 28 DPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~ 106 (202)
T 3esl_A 28 DPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMF 106 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHH
Confidence 3488999999998754 332 2355 799999986533 335899998865 2233556666665554
Q ss_pred Hhh-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 416 HVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 416 ~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
..- -.....+|..||.+++..|++.+|..+|+..
T Consensus 107 ~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 107 NKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 311 1346677777777777778887777777776
No 439
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.52 E-value=0.00051 Score=81.75 Aligned_cols=97 Identities=8% Similarity=0.065 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCHH---HHHH
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIR 393 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-----p~~~~---~w~~ 393 (1167)
+...++|++|+..|+++|....-.+.+..|.-+..+..++..+...|++++|+.+|+++|... +++++ .+.+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455677888888888888644444556667777788888888888889999888888888762 44444 5677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 394 YVLCMEASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~ 418 (1167)
+|.++..+|++++|..+|++|+++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7777777888888888888777765
No 440
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.51 E-value=0.0011 Score=64.57 Aligned_cols=125 Identities=14% Similarity=0.260 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHHh---CCHHHHHHHHHHHHhccCC---------CHHHHHHHHHHHHhh
Q 001064 115 IVKIRRVYDAFLAEFPL-C-YGYWKKYADHEARV---GSMDKVVEVYERAVQGVTY---------SVDIWLHYCIFAINT 180 (1167)
Q Consensus 115 ~~~ar~~ye~~l~~~P~-~-~~~W~~~a~~e~~~---~~~e~A~~l~eraL~~~P~---------s~~lw~~ya~~~~~~ 180 (1167)
...+|..||..|..+-. + .+.|..|+.+.... |. .....+++||++.+-+ -+.+|+.|+++.
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 34577788888877532 2 48999999998753 43 3477899999987633 378888888763
Q ss_pred cCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 001064 181 YGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILENPIQQLDRYFSSFKEF 249 (1167)
Q Consensus 181 ~~~~~~Ar~~feral~~-~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~p~~~~~~~~~~~~~~ 249 (1167)
. ..+.+|..+... +|.. ...+|..|+.++...|++.+|..||+++++..-.-++.+-+.+..|
T Consensus 82 -~---dp~~if~~L~~~~IG~~--~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F 145 (152)
T 4a1g_A 82 -S---DLHQFFEFLYNHGIGTL--SSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLF 145 (152)
T ss_dssp -S---CHHHHHHHHHTTTTTTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred -C---CHHHHHHHHHHCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 2 278888887753 4443 6789999999999999999999999999997444445555555555
No 441
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.45 E-value=0.0013 Score=67.96 Aligned_cols=124 Identities=16% Similarity=0.306 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHh---CC--HHHHHHHHHHHHhccCCC---------HHHHHHHHHH
Q 001064 114 NIVKIRRVYDAFLAEF---PLCYGYWKKYADHEARV---GS--MDKVVEVYERAVQGVTYS---------VDIWLHYCIF 176 (1167)
Q Consensus 114 ~~~~ar~~ye~~l~~~---P~~~~~W~~~a~~e~~~---~~--~e~A~~l~eraL~~~P~s---------~~lw~~ya~~ 176 (1167)
.+.+.|..|++.|... .|-...|..|+.+.... |. -..-..+++||++.+-++ +.+|+.|+++
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~ 129 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc
Confidence 5677888899888752 45569999999997754 32 223568999999876433 7889999885
Q ss_pred HHhhcCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhHHHHHHHH
Q 001064 177 AINTYGDPETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRYFSSF 246 (1167)
Q Consensus 177 ~~~~~~~~~~Ar~~feral~~-~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~---p~~~~~~~~~~~ 246 (1167)
. +..+.+|..+... +|.. ...+|..|+.++...|++.+|..||+++++. |...+...|..|
T Consensus 130 ~-------~~p~~if~~L~~~~IG~~--~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F 194 (223)
T 4aez_C 130 I-------DEPVELFSFLAHHHIGQE--SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQF 194 (223)
T ss_dssp C-------SCHHHHHHHHHHTTCSTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHH
T ss_pred c-------CCHHHHHHHHHHCCcchh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 2 3566788887763 4443 6789999999999999999999999999996 544444444444
No 442
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.35 E-value=0.0013 Score=64.15 Aligned_cols=97 Identities=12% Similarity=-0.002 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhh-hccChHHHHHHHHHHHHcCCHHHHHHH
Q 001064 370 FNKVVKLYERCLIACANYPEYWIRYVLCMEASG---SMDLAHNALARATHVF-VKRLPEIHLFAARFKEQNGDIDGARAA 445 (1167)
Q Consensus 370 ~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g---~~e~A~~vl~rA~~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~ 445 (1167)
...++..|++.+...+...+..++|+..|.+.. ++++++.+|+..++.. |.+..+.++.+|..+.+.|++++|+..
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456778888888888889999999999998877 6679999999999876 325678888888888999999999999
Q ss_pred HHHHhhhcCCChHHHHHHHHHH
Q 001064 446 YQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 446 ~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
++++ +++.|++..+....-.+
T Consensus 94 ~~~l-L~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 94 VRGL-LQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHH-HHHCTTCHHHHHHHHHH
T ss_pred HHHH-HhcCCCCHHHHHHHHHH
Confidence 9998 78999988775444333
No 443
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.34 E-value=0.0021 Score=58.95 Aligned_cols=86 Identities=14% Similarity=-0.008 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCC-ccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCHHHH
Q 001064 458 LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKE-HSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSKPLL 536 (1167)
Q Consensus 458 ~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~-~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~~l~ 536 (1167)
..-++..+....+.++++.|...|++|+...+... .....+.++..++..+++ .|++++|+.++++++++.|++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34567788888899999999999999999875432 124567889999999887 9999999999999999999998887
Q ss_pred HHHHHhHh
Q 001064 537 EALIHFES 544 (1167)
Q Consensus 537 ~~~~~~e~ 544 (1167)
.++..|+.
T Consensus 84 ~n~~~~~~ 91 (104)
T 2v5f_A 84 GNLKYFEY 91 (104)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 66665554
No 444
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.29 E-value=0.0027 Score=61.70 Aligned_cols=103 Identities=16% Similarity=0.237 Sum_probs=63.9
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHc
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDFNKVVKLYERCLIACANY---------PEYWIRYVLCMEAS 401 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~---g~~~~a~~~yeral~~~p~~---------~~~w~~ya~~l~~~ 401 (1167)
.||..|.. | ...+-++.|..|+.|.+.. |. .....+++||+....+. ..+|+.|+.+.
T Consensus 12 ~fE~~i~~-y-----~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 12 MLEAHMQS-Y-----KGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHTTS-C-----CSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHh-C-----CCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 47777763 2 1233488999999998764 33 34778999999875332 34788887643
Q ss_pred CCHHHHHHHHHHHHHhh-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 402 GSMDLAHNALARATHVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
.+ +..+|.-....- -.....+|..||.+++..|++.+|..+|+..
T Consensus 82 ~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 82 SD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRG 127 (152)
T ss_dssp SC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 445554433210 0245566666666666667777776666665
No 445
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.29 E-value=0.0015 Score=63.68 Aligned_cols=92 Identities=14% Similarity=-0.019 Sum_probs=78.5
Q ss_pred CCchHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCHHHHHH
Q 001064 78 AMSGEEDRLWNIVKANSSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEF-P-LCYGYWKKYADHEARVGSMDKVVE 154 (1167)
Q Consensus 78 ~~~~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~-~~~~~~ar~~ye~~l~~~-P-~~~~~W~~~a~~e~~~~~~e~A~~ 154 (1167)
.+....+.|.+.++.++.+.++.+.|+-.+-++. .+++++++.+++.+++.. | ..-++++.++-.+.+.++|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445667788888888999999999999888742 247889999999999998 7 568999999999999999999999
Q ss_pred HHHHHHhccCCCHHH
Q 001064 155 VYERAVQGVTYSVDI 169 (1167)
Q Consensus 155 l~eraL~~~P~s~~l 169 (1167)
.++++|+..|.+...
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999999988544
No 446
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.28 E-value=0.0038 Score=64.45 Aligned_cols=92 Identities=22% Similarity=0.339 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHc---CC--hHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001064 352 TELENWHNYLDFIERD---GD--FNKVVKLYERCLIACANY---------PEYWIRYVLCMEASGSMDLAHNALARATHV 417 (1167)
Q Consensus 352 ~~~~~W~~y~~~~e~~---g~--~~~a~~~yeral~~~p~~---------~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~ 417 (1167)
+-++.|..|+.|.+.. |. -.....+++||+..+.+. ..+|+.|+.+. +.+..+|.-....
T Consensus 70 DPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~~ 143 (223)
T 4aez_C 70 DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAHH 143 (223)
T ss_dssp CTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHHC
Confidence 3378899999999764 22 234678999999986433 35888888742 2344455443321
Q ss_pred h-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 418 F-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 418 ~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
- -.....+|..||.+++..|++.+|..+|+..
T Consensus 144 ~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 144 HIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 0346677777777777777777777777776
No 447
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.25 E-value=0.0067 Score=72.55 Aligned_cols=161 Identities=10% Similarity=0.050 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHh-cCCCHH
Q 001064 320 EMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDG---------DFNKVVKLYERCLIA-CANYPE 389 (1167)
Q Consensus 320 ~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g---------~~~~a~~~yeral~~-~p~~~~ 389 (1167)
..+-+.++.++|+..|++...+- + . .+...|..++..+-+.+ +.++|..+|++.... +.-+..
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~G---v---~-pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNG---V---Q-LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHT---C---C-CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC---C---C-CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45677889999999999988631 1 2 23556777777664433 367899999998765 344677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcCCChHHHHHHHHHHH
Q 001064 390 YWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-ETSPGLLEAIIKHANME 468 (1167)
Q Consensus 390 ~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-~~~P~~~~~~~~~a~~e 468 (1167)
.|..++..+.+.|+.++|..+|++....-..-+...|......+.+.|++++|..+|+.... .+.| +...|..++..+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Confidence 89999999999999999999999987643233556777777888899999999999998732 2455 456788888999
Q ss_pred HHcCCHHHHHHHHHHHHHhh
Q 001064 469 RRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 469 ~r~g~~e~A~~~~~kAl~~~ 488 (1167)
.+.|+.++|..+|++..+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHT
T ss_pred hhCCCHHHHHHHHHHHHHhC
Confidence 99999999999999987754
No 448
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00097 Score=59.69 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=59.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcC-----CCceeeeEeeecCCCcccccEEEEEECCHHHHHHHH-HhCCCeeeCcEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNF-----GRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAI-QASPIQLAGRQV 1103 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al-~~~~~~i~g~~l 1103 (1167)
..++|=+-|||..+++..|+.+..++ |.|+.+ .++... |-|+|+|.|...|-+|. ..+|.+|.||.|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI--~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKI--LLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEE--EEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEE--EEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 45888899999999999999999999 999885 343332 46999999998888776 669999999999
Q ss_pred EEEe
Q 001064 1104 YIEE 1107 (1167)
Q Consensus 1104 ~V~~ 1107 (1167)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9853
No 449
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.16 E-value=0.0035 Score=61.78 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=64.4
Q ss_pred HHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHc---CCh-HHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHH
Q 001064 334 GFETAIRRPYFHVKPLSVTELENWHNYLDFIERD---GDF-NKVVKLYERCLIACANY---------PEYWIRYVLCMEA 400 (1167)
Q Consensus 334 ~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~---g~~-~~a~~~yeral~~~p~~---------~~~w~~ya~~l~~ 400 (1167)
.||..|. .| ...+-++.|..||.|.+.. |.. .....+++||+....++ ..+|+.|+.+.
T Consensus 5 ~fE~~i~-~~-----~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~-- 76 (164)
T 2wvi_A 5 AFEYEIR-FY-----TGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC-- 76 (164)
T ss_dssp HHHHHCC-CC-----CSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHh-hc-----CCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc--
Confidence 3666664 22 2234478899999998763 222 24577999999985432 35888888753
Q ss_pred cCCHHHHHHHHHHHHHhh-hccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 401 SGSMDLAHNALARATHVF-VKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 401 ~g~~e~A~~vl~rA~~~~-~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
++ +..+|.-....- -.....+|..||.+++..|++.+|..+|+..
T Consensus 77 -~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 77 -NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp -SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 444444333210 0346677777777777777777777777776
No 450
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.12 E-value=0.0032 Score=62.08 Aligned_cols=118 Identities=14% Similarity=0.322 Sum_probs=81.7
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHh---CCH-HHHHHHHHHHHhccCC---------CHHHHHHHHHHHHhhcCCH
Q 001064 120 RVYDAFLAEF--PLCYGYWKKYADHEARV---GSM-DKVVEVYERAVQGVTY---------SVDIWLHYCIFAINTYGDP 184 (1167)
Q Consensus 120 ~~ye~~l~~~--P~~~~~W~~~a~~e~~~---~~~-e~A~~l~eraL~~~P~---------s~~lw~~ya~~~~~~~~~~ 184 (1167)
+.|+..|..+ .+-...|..|+.+.... |.. ..-..+++||++.+-+ -+.+|+.|+.+. ++
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~----~~- 78 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC----NE- 78 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC----SC-
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc----CC-
Confidence 3455555433 23358999999987652 222 2346789999987633 378899888873 33
Q ss_pred HHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---chhhHHHHHHHH
Q 001064 185 ETIRRLFERGLAY-VGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRILEN---PIQQLDRYFSSF 246 (1167)
Q Consensus 185 ~~Ar~~feral~~-~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~l~~---p~~~~~~~~~~~ 246 (1167)
.+.+|..+... +|.. ...+|..|+.++...+++.+|..||+++++. |...+...+..|
T Consensus 79 --p~~if~~L~~~~IG~~--~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F 140 (164)
T 2wvi_A 79 --PLDMYSYLHNQGIGVS--LAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQF 140 (164)
T ss_dssp --HHHHHHHHHHTTSSTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCcchh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 66778877753 4443 6789999999999999999999999999996 444444444443
No 451
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.0047 Score=72.19 Aligned_cols=91 Identities=8% Similarity=0.022 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHHhh----hcCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC---CCccCchHHHHHHHH
Q 001064 436 NGDIDGARAAYQLVHT----ETSPGLL---EAIIKHANMERRLGNLEDAFSLYEQAIAIEKG---KEHSQTLPMLYAQYS 505 (1167)
Q Consensus 436 ~g~~~~A~~~~~~a~~----~~~P~~~---~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~---~~~~~~~~~l~~~~a 505 (1167)
.|++++|..+|++++. .+.|+++ ..+..++.++..+|++++|+.+|+++|++... .+| +.....+.++|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H-p~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS-LNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHH
Confidence 5677777777777631 2345544 45778888899999999999999999987542 222 33344578889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhh
Q 001064 506 RFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 506 ~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
.+++. .|++++|..+|++||+.
T Consensus 390 ~~~~~-qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMG-LENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHh-ccCHHHHHHHHHHHHHH
Confidence 88776 99999999999999874
No 452
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.65 E-value=0.014 Score=53.28 Aligned_cols=75 Identities=13% Similarity=-0.017 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc------cChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFVK------RLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAII 462 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p------~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~ 462 (1167)
+-.+.+|..+...++++.|...|+.|+....+ ....++..++..+.+.|++++|+..++++ +++.|++..+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a-l~l~P~~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL-LELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH-HhcCCCCHHHHh
Confidence 33444555555555555555555555544311 23445555555555566666666666655 455565555443
Q ss_pred HH
Q 001064 463 KH 464 (1167)
Q Consensus 463 ~~ 464 (1167)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 453
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.011 Score=52.75 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=61.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhc-----CCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeCcEeE
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQN-----FGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAGRQVY 1104 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~-----~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g~~l~ 1104 (1167)
-+++|.|.|||..++++.|+-+|++ =|+|.++.. . . +-|+|+|.+.+.+++.|+...+.|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~--~-~------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR--L-G------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE--E-T------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE--c-C------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 3689999999999999999999986 268877542 1 1 578999999999999998878999999999
Q ss_pred EEeccCCC
Q 001064 1105 IEERRPNT 1112 (1167)
Q Consensus 1105 V~~~r~~~ 1112 (1167)
|....++.
T Consensus 78 V~P~~~~~ 85 (104)
T 2dhx_A 78 LRPAPPRA 85 (104)
T ss_dssp EEECCCCC
T ss_pred EEcCCCCC
Confidence 98766543
No 454
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.57 E-value=0.025 Score=66.01 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCHH---HHHHHHHHH
Q 001064 327 EFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIRYVLCM 398 (1167)
Q Consensus 327 ~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-----p~~~~---~w~~ya~~l 398 (1167)
+|++|+..|+++|....-.+.|..+.-+..+..++..+...|++++|+.+|+|+|... +++++ .+.++|.++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 4677888888877643334455666667778888888888888888888888888752 44554 577778888
Q ss_pred HHcCCHHHHHHHHHHHHHhh
Q 001064 399 EASGSMDLAHNALARATHVF 418 (1167)
Q Consensus 399 ~~~g~~e~A~~vl~rA~~~~ 418 (1167)
..+|++++|..+|++|+++.
T Consensus 393 ~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHH
Confidence 88888888888888887765
No 455
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.52 E-value=0.02 Score=66.86 Aligned_cols=98 Identities=11% Similarity=0.050 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCHH---HHHH
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIAC-----ANYPE---YWIR 393 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~-----p~~~~---~w~~ 393 (1167)
+...+++++|+..|++++...--.+.+.++.-+..+..++..+...|++++|+.+|+++|... +.+++ .+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445678899999999999754445566777777888888998899999999999999999762 45554 6888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhh
Q 001064 394 YVLCMEASGSMDLAHNALARATHVFV 419 (1167)
Q Consensus 394 ya~~l~~~g~~e~A~~vl~rA~~~~~ 419 (1167)
+|.++..+|++++|..+|++|+++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 88888889999999999999988763
No 456
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.50 E-value=0.018 Score=67.25 Aligned_cols=92 Identities=13% Similarity=-0.001 Sum_probs=68.2
Q ss_pred HcCCHHHHHHHHHHHhh----hcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhC---CCccCchHHHHHHH
Q 001064 435 QNGDIDGARAAYQLVHT----ETSPGL---LEAIIKHANMERRLGNLEDAFSLYEQAIAIEKG---KEHSQTLPMLYAQY 504 (1167)
Q Consensus 435 ~~g~~~~A~~~~~~a~~----~~~P~~---~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~---~~~~~~~~~l~~~~ 504 (1167)
.+|++++|+.+|++++. .+.|++ +.++...+.++..+|++++|+.+++++|..... .+| +.....+.++
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H-p~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH-PVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC-hHHHHHHHHH
Confidence 46778888888887631 123444 445777888888999999999999999987531 122 3334457888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 505 SRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 505 a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
|.+++. .|++++|..+|++|++.
T Consensus 378 a~~~~~-~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLH-QGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHH
Confidence 888776 99999999999999974
No 457
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.64 E-value=0.092 Score=49.26 Aligned_cols=98 Identities=14% Similarity=0.008 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhhhc-cChHHHHHHHHHHHHcCCHHHHHH
Q 001064 369 DFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDL---AHNALARATHVFVK-RLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 369 ~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~---A~~vl~rA~~~~~p-~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
....++..|.+.+...+...+.-++||-.|.+..+... ++.+|+..+....| ..-+..+.+|....+.|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34567778888888777888999999988887665544 77777777665412 445667777888888899999998
Q ss_pred HHHHHhhhcCCChHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANM 467 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~ 467 (1167)
.++.+ +++.|++..+......+
T Consensus 96 ~~~~l-L~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 96 YVRGL-LQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHH-HHHCTTCHHHHHHHHHH
T ss_pred HHHHH-HHhCCCCHHHHHHHHHH
Confidence 88887 78888887765444433
No 458
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.94 E-value=0.072 Score=49.13 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=55.8
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeC-cEeEEEe
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG-RQVYIEE 1107 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g-~~l~V~~ 1107 (1167)
..+.|.|-+.|... ...|...|++||.|.+.. . . ....+-.|.|.+..+|++||..||..|+| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~--~--~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHV--M--S---NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEE--E--C---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEec--c--C---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEE
Confidence 45889999999885 566779999999998743 2 1 13469999999999999999999999986 4456654
No 459
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.82 E-value=0.71 Score=52.58 Aligned_cols=171 Identities=12% Similarity=0.022 Sum_probs=105.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhhccChHHHH----
Q 001064 358 HNYLDFIERDGDFNKVVKLYERCLIACANYP-----EYWIRYVLCMEA-SGSMDLAHNALARATHVFVKRLPEIHL---- 427 (1167)
Q Consensus 358 ~~y~~~~e~~g~~~~a~~~yeral~~~p~~~-----~~w~~ya~~l~~-~g~~e~A~~vl~rA~~~~~p~~~~l~~---- 427 (1167)
..++.++.+.|+.++...++.........-+ .+-..+...+.. .+..+.-..+...+++-. .+.-..|+
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455566666777666666655443332222 233333333332 234444555555555533 22223332
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHhhhcCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCC-CccCchHH
Q 001064 428 --FAARFKEQNGDIDGARAAYQLVHTETSP-----GLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGK-EHSQTLPM 499 (1167)
Q Consensus 428 --~~a~~~e~~g~~~~A~~~~~~a~~~~~P-----~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~-~~~~~~~~ 499 (1167)
.++.++...|++.+|.+++.+++.++.. ...+++..-+.++..++|+.+++.+|.+|......- .+......
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 5788999999999999999987543322 234667777888889999999999999998876321 11111222
Q ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhhcC
Q 001064 500 LYAQYSRFLHL-VSRNAEKARQILVDSLDHVQ 530 (1167)
Q Consensus 500 l~~~~a~~~~~-~~g~~~~Ar~i~~kal~~~p 530 (1167)
+.. ++..++. ..++++.|...|-++++.+.
T Consensus 182 i~~-~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 182 LDL-QSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHH-HHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHH-HhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 333 3444455 59999999999999987553
No 460
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.59 E-value=0.049 Score=50.86 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=55.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeec---------CCCc-----ccccEEEEEECCHHHHHHHHHhCCCe
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRN---------RKDV-----VGVCYAFVEFEDISGVQNAIQASPIQ 1097 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---------~~~g-----~~kg~afV~F~~~~~a~~Al~~~~~~ 1097 (1167)
..|.|-+.|.+.+. .+-+.|++||.|.+.- ...+ +.+. .+.++-.|+|++..+|.+||..||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~-~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDF-EVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCC-GGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeec-cccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 56778888876655 4558999999997621 1111 0000 13568899999999999999999999
Q ss_pred eeCcEeEEEecc
Q 001064 1098 LAGRQVYIEERR 1109 (1167)
Q Consensus 1098 i~g~~l~V~~~r 1109 (1167)
|+|..|-|...+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887654
No 461
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.32 E-value=0.14 Score=48.10 Aligned_cols=89 Identities=15% Similarity=-0.019 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 001064 81 GEEDRLWNIVKANSSDFSAWTALLEETEKLA-QDNIVKIRRVYDAFLAEF-P-LCYGYWKKYADHEARVGSMDKVVEVYE 157 (1167)
Q Consensus 81 ~a~~~l~~~l~~nP~d~~aw~~L~~~~~~~~-~~~~~~ar~~ye~~l~~~-P-~~~~~W~~~a~~e~~~~~~e~A~~l~e 157 (1167)
.....+.+.+..++-..++-+.|+-.+-+.. ..++.+.+.+++.++... | ..-++.+.+|-.+.+.|+|++|++.++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444555555555666666666655554321 234455666666666655 4 344555566666666666666666666
Q ss_pred HHHhccCCCHHH
Q 001064 158 RAVQGVTYSVDI 169 (1167)
Q Consensus 158 raL~~~P~s~~l 169 (1167)
.+|+..|.|...
T Consensus 99 ~lL~~eP~n~QA 110 (126)
T 1nzn_A 99 GLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHCTTCHHH
T ss_pred HHHHhCCCCHHH
Confidence 666666666433
No 462
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.15 E-value=0.14 Score=45.09 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=41.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 1093 (1167)
+-++| ++|......||.++|+.||.|. |.-.|. ..|||.|.+++.|..|+..
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~---I~WidD------TsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDD------TSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC---CEEEET------TEEEEECSCHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE---EEEEcC------CeEEEEecCHHHHHHHHHh
Confidence 44555 9999999999999999999654 333343 2799999999999999875
No 463
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.47 E-value=1.5 Score=49.79 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhcCCCHH
Q 001064 311 LEKYIAVREEMYKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIER-DGDFNKVVKLYERCLIACANYPE 389 (1167)
Q Consensus 311 ~~~~i~~~~~~y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~-~g~~~~a~~~yeral~~~p~~~~ 389 (1167)
.+..+..+.++|.+.++.++-...+... |+++..-+.. .-..+-+.++++... .+..+.-+.+...|+.-+-..-.
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ka-k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r 94 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVT--RPFLSSISKA-KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKR 94 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHT--TTGGGGSCHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHHHHhchH-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788899999888876666554 5666543322 223456777776644 34566677888888876554434
Q ss_pred HHH------HHHHHHHHcCCHHHHHHHHHHHHHhhhc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHhh---hc--
Q 001064 390 YWI------RYVLCMEASGSMDLAHNALARATHVFVK-----RLPEIHLFAARFKEQNGDIDGARAAYQLVHT---ET-- 453 (1167)
Q Consensus 390 ~w~------~ya~~l~~~g~~e~A~~vl~rA~~~~~p-----~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~---~~-- 453 (1167)
.|+ +++.++...|++.+|..++.+.+.-+.. ...++++....++...+++.+++.+|.++.. .+
T Consensus 95 ~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 95 TFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 553 7889999999999999999998875522 1345677778888899999999999998732 11
Q ss_pred CCC-hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhh
Q 001064 454 SPG-LLEAIIKHANMER-RLGNLEDAFSLYEQAIAIEK 489 (1167)
Q Consensus 454 ~P~-~~~~~~~~a~~e~-r~g~~e~A~~~~~kAl~~~~ 489 (1167)
.|. ...+...-+.++. ..++|..|...|-.++....
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 121 2234566667777 78999999999999987764
No 464
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=93.24 E-value=0.4 Score=44.86 Aligned_cols=110 Identities=12% Similarity=0.125 Sum_probs=63.6
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccCCCceEEEEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNGGVLVMVSGS 801 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~~~~i~v~v~G~ 801 (1167)
...+..|+..++ .+.+.|..+|.++..++...+..+.|...|.+.-..+...++..+.++.+....+. +..++...-.
T Consensus 9 ~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~g-d~A~~~~~~~ 87 (129)
T 3hx8_A 9 EAANADFVKAYNSKDAAGVASKYMDDAAAFPPDMARVDGRQNIQKLWQGAMDMGISELKLTTLDVQESG-DFAFESGSFS 87 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTSCCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEET-TEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCCCcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcCC-CEEEEEEEEE
Confidence 567899999987 68999999999987775332333455555444333333334445555555544332 2233332222
Q ss_pred EEe--cCccccc--eeEEEEEEeee-CCeEEEEcceEE
Q 001064 802 VKT--KEFCRRR--KFVQTFFLAPQ-EKGYFVLNDIFH 834 (1167)
Q Consensus 802 ~~~--~~~~~~~--~F~q~F~L~~~-~~~y~v~nd~fr 834 (1167)
++. .+. .+. ...-++++..+ +++|.|..|.|.
T Consensus 88 ~~~~~~~G-~~~~~~g~~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 88 LKAPGKDS-KLVDAAGKYVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp EEEECTTS-CEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEeeCCCC-CeeeeeEEEEEEEEECCCCcEEEEEeecc
Confidence 222 222 222 23455666777 789999999983
No 465
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=92.98 E-value=0.48 Score=41.62 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=51.1
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCc--ccccEEEEEECCHHHHHHHHHh-CCCeeeC
Q 001064 1032 KSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDV--VGVCYAFVEFEDISGVQNAIQA-SPIQLAG 1100 (1167)
Q Consensus 1032 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g--~~kg~afV~F~~~~~a~~Al~~-~~~~i~g 1100 (1167)
++|-|++||+++|++++.+.++....+.... .+..+.+. ...+-|+|.|.+.+++..-... +|+.+-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~-fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFE-FFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEE-EEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEE-EeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5789999999999999999999888765433 23322221 2346799999999998888777 7887754
No 466
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=92.93 E-value=0.51 Score=45.55 Aligned_cols=109 Identities=8% Similarity=0.090 Sum_probs=69.2
Q ss_pred HhHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc--ceeEeeeeccccCCCceEEEE
Q 001064 722 GSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSLGSWNGGVLVMV 798 (1167)
Q Consensus 722 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~--~~~i~~~d~q~~~~~~i~v~v 798 (1167)
=..++..|+..++ .+.+.|..+|.++..++ ..|....|...|.+....+..-.+. .+.+...+.....++..+|.+
T Consensus 21 i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~-~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~A~v~~ 99 (143)
T 4i4k_A 21 VAALPARIVAAWADHDADRFADVFAEDGTMI-LPGLFRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGDGIALLIT 99 (143)
T ss_dssp HHTHHHHHHHHHHTTCHHHHHTTEEEEEEEE-ETTEEEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhcCceEE-eCCCeecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCCCEEEEEe
Confidence 3567899999987 68999999999988776 5664455665554444443332322 233333333322233344455
Q ss_pred EEEEEecCcc---ccceeEEEEEEeeeCCeEEEEcc
Q 001064 799 SGSVKTKEFC---RRRKFVQTFFLAPQEKGYFVLND 831 (1167)
Q Consensus 799 ~G~~~~~~~~---~~~~F~q~F~L~~~~~~y~v~nd 831 (1167)
.|.+...+.. +.+.+.+|+++...+++|.|...
T Consensus 100 ~~~~~~~g~~~~~~~~~~~~T~v~~r~~g~WrI~~~ 135 (143)
T 4i4k_A 100 EGGILAPGETEASGDGAVRASWLAVEQDGQWRLAAY 135 (143)
T ss_dssp EEEEECTTCSSCCGGGEEEEEEEEEEETTEEEEEEE
T ss_pred ccceecCCCCCCCcccceEEEEEEEEECCcEEEEEe
Confidence 5666555532 23668999999999999999863
No 467
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.63 E-value=0.24 Score=44.38 Aligned_cols=74 Identities=8% Similarity=0.079 Sum_probs=58.2
Q ss_pred ccEEEEecCCCCC-C----HHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh-CCCeeeCcEeE
Q 001064 1031 VKSVYVRNLPSTV-T----AFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA-SPIQLAGRQVY 1104 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~-t----~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~~l~ 1104 (1167)
..+|+|.||+.++ . .+.++++|..|+++..... ++ +-.-..|.|.+.++|.+|-.. ++..++|+.|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lk------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FK------SFKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ET------TTTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cC------cceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 3789999998765 2 2577999999999887542 32 223568999999999998766 79999999999
Q ss_pred EEeccCC
Q 001064 1105 IEERRPN 1111 (1167)
Q Consensus 1105 V~~~r~~ 1111 (1167)
|-++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998743
No 468
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.85 E-value=2.6 Score=52.93 Aligned_cols=130 Identities=13% Similarity=0.123 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcC
Q 001064 358 HNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNG 437 (1167)
Q Consensus 358 ~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g 437 (1167)
...+.++++.|..+.|+.+.+ ++..-+.++ ...|++++|.++.+. -+.+..|..+|.+..+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~~~---l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKFELA---LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHHHHH---HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchheehh---hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcC
Confidence 566677788888777665442 333223332 346888888776421 246789999999999999
Q ss_pred CHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHH
Q 001064 438 DIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEK 517 (1167)
Q Consensus 438 ~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~ 517 (1167)
+++.|..+|.++ .. +-....++...|+.+....+-+.+..... + ..+...+...|++++
T Consensus 696 ~~~~A~~~y~~~-~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----------~--~~A~~~~~~~g~~~~ 754 (814)
T 3mkq_A 696 NFKLAIEAFTNA-HD--------LESLFLLHSSFNNKEGLVTLAKDAETTGK----------F--NLAFNAYWIAGDIQG 754 (814)
T ss_dssp CHHHHHHHHHHH-TC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC----------H--HHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHc-cC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc----------h--HHHHHHHHHcCCHHH
Confidence 999999999986 21 12223334446777766666555554321 1 111111223788888
Q ss_pred HHHHHHHH
Q 001064 518 ARQILVDS 525 (1167)
Q Consensus 518 Ar~i~~ka 525 (1167)
|.++|.+.
T Consensus 755 a~~~~~~~ 762 (814)
T 3mkq_A 755 AKDLLIKS 762 (814)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88887765
No 469
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.50 E-value=1.3 Score=43.40 Aligned_cols=113 Identities=15% Similarity=0.071 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--ccChHHH
Q 001064 358 HNYLDFIERDGDFNKVVKLYERCLIACANYP---------EYWIRYVLCMEASGSMDLAHNALARATHVFV--KRLPEIH 426 (1167)
Q Consensus 358 ~~y~~~~e~~g~~~~a~~~yeral~~~p~~~---------~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--p~~~~l~ 426 (1167)
+.-++-+...+.++.|+.+...++....+++ .+.+.+|+.+...+.+..|...|++|++... ++.+...
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3334445567889999999888776633322 3677788888889999999999999987551 1111110
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 483 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~k 483 (1167)
..+ + -...+... .. .+...++.++.+.++..+++.++|+.+++.
T Consensus 104 ---~~~----~----~~ss~p~s-~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 104 ---PST----G----NSASTPQS-QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ---ccc----c----ccCCCccc-cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 000 0 00000000 11 234556777777788888888888888764
No 470
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.43 E-value=2.2 Score=42.45 Aligned_cols=110 Identities=10% Similarity=0.069 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHH
Q 001064 95 SDFSAWTALLEETEKLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYC 174 (1167)
Q Consensus 95 ~d~~aw~~L~~~~~~~~~~~~~~ar~~ye~~l~~~P~~~~~W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya 174 (1167)
.|.+.-+.|+-.+ |+++.|..+.+.+ ++...|..+++..+.+|+++-|+++|.++=.. ..+
T Consensus 6 ~D~~~rF~LAL~l-----g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----~~L----- 66 (177)
T 3mkq_B 6 QDPHIRFDLALEY-----GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF----DKL----- 66 (177)
T ss_dssp SCHHHHHHHHHHT-----TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----HHH-----
T ss_pred CChHHHHHHHHhc-----CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----HHH-----
Confidence 4555556665532 6888888877665 78899999999999999999999999876432 122
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001064 175 IFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWSRVAMIYTRI 231 (1167)
Q Consensus 175 ~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw~~y~~~e~~~~~~~~A~~iy~r~ 231 (1167)
.|+....|+.++...+-+.+.. -|. +..-......+|+++++.++|.+.
T Consensus 67 ~~Ly~~tg~~e~L~kla~iA~~-~g~-------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQNIAQT-RED-------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-TTC-------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHH-Ccc-------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 2222245888887776666654 221 112222233368899999998765
No 471
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=91.39 E-value=1.5 Score=42.37 Aligned_cols=115 Identities=15% Similarity=0.179 Sum_probs=70.6
Q ss_pred hHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCcc--eeEeeeeccccCCCceEEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFTA--IEIKTINSLGSWNGGVLVMVS 799 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~--~~i~~~d~q~~~~~~i~v~v~ 799 (1167)
..++..|...++ .+.+.|..+|.++..++...|....|...|.+....+..-.+.. +.+...+.....++..+|.+.
T Consensus 9 ~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~A~v~~~ 88 (146)
T 3gzr_A 9 QALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGSALAVVT 88 (146)
T ss_dssp HHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCCeeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCCEEEEEEE
Confidence 467888998887 68999999999998877566755566665554444333323322 232222222222233444444
Q ss_pred EEEE---ecCccc--cceeEEEEEEeeeCCeEEEEcceEEecc
Q 001064 800 GSVK---TKEFCR--RRKFVQTFFLAPQEKGYFVLNDIFHFLD 837 (1167)
Q Consensus 800 G~~~---~~~~~~--~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 837 (1167)
..++ ..+... ...+.+|++|...+++|.|..+--..++
T Consensus 89 ~~l~g~~~~~G~~~~~~~~~~t~v~vr~dg~WrI~a~h~s~v~ 131 (146)
T 3gzr_A 89 LIQDAYVTPDGRQMPRAHDRLTLLAVEREGVWRFIHGHNTIVN 131 (146)
T ss_dssp EEECCEECTTCCEECCEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEecceeCCCCCcCCccCcEEEEEEEEECCEEEEEEEecccCc
Confidence 4442 122211 2468899999999999999998776554
No 472
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.36 E-value=5.3 Score=39.72 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=55.4
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHH
Q 001064 365 ERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARA 444 (1167)
Q Consensus 365 e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~ 444 (1167)
.+.|+++.|..+.+.. ++...|.+++..-...|+++-|..+|.++-. ...+.+. +.-.|+.++-.+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~L----y~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFL----YLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHH----HHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHH----HHHhCCHHHHHH
Confidence 4567777777665442 5677888888877778888888887766532 2223222 234566665555
Q ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001064 445 AYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQ 483 (1167)
Q Consensus 445 ~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~k 483 (1167)
+-+.+.. .-++-..+. ...-+|+++++.++|.+
T Consensus 82 la~iA~~--~g~~n~af~----~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQT--REDFGSMLL----NTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHH--TTCHHHHHH----HHHHHTCHHHHHHHHHH
T ss_pred HHHHHHH--CccHHHHHH----HHHHcCCHHHHHHHHHH
Confidence 5444311 222111111 12236777777777653
No 473
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.31 E-value=1.8 Score=40.73 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHH
Q 001064 387 YPEYWIRYVLCMEASGSM---DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIK 463 (1167)
Q Consensus 387 ~~~~w~~ya~~l~~~g~~---e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~ 463 (1167)
.+..-++||-.|.+..+. .+++.+++..+...+...-+.++.+|.-..+.|++++|+...+.+ +++.|+|..+...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l-L~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL-FEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH-HhhCCCCHHHHHH
Confidence 467778888777776544 467788888877653345677788888888999999999999987 7889998776544
Q ss_pred HHHH
Q 001064 464 HANM 467 (1167)
Q Consensus 464 ~a~~ 467 (1167)
...+
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 474
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.24 E-value=1.4 Score=41.45 Aligned_cols=91 Identities=5% Similarity=-0.083 Sum_probs=68.5
Q ss_pred CchHHHHHHHHHHhC--CC-CHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHH
Q 001064 79 MSGEEDRLWNIVKAN--SS-DFSAWTALLEETEKL-AQDNIVKIRRVYDAFLAEFPL-CYGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 79 ~~~a~~~l~~~l~~n--P~-d~~aw~~L~~~~~~~-~~~~~~~ar~~ye~~l~~~P~-~~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
.++.+..|++..... +. ...+-+.|+-.+-+. ...++.+++.+++.++...|. .-++|+.+|--+.+.|+|++|+
T Consensus 19 ~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar 98 (134)
T 3o48_A 19 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 98 (134)
T ss_dssp CHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHH
Confidence 345566666655432 22 456666666554443 235778999999999999994 4688999999999999999999
Q ss_pred HHHHHHHhccCCCHHH
Q 001064 154 EVYERAVQGVTYSVDI 169 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~l 169 (1167)
+..+++|+..|.|...
T Consensus 99 ~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 99 RYVDTLFEHERNNKQV 114 (134)
T ss_dssp HHHHHHHTTCTTCHHH
T ss_pred HHHHHHHhhCCCCHHH
Confidence 9999999999998544
No 475
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.01 E-value=2.2 Score=40.62 Aligned_cols=91 Identities=5% Similarity=-0.081 Sum_probs=69.6
Q ss_pred CchHHHHHHHHHHhC---CCCHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHH
Q 001064 79 MSGEEDRLWNIVKAN---SSDFSAWTALLEETEKL-AQDNIVKIRRVYDAFLAEFPLC-YGYWKKYADHEARVGSMDKVV 153 (1167)
Q Consensus 79 ~~~a~~~l~~~l~~n---P~d~~aw~~L~~~~~~~-~~~~~~~ar~~ye~~l~~~P~~-~~~W~~~a~~e~~~~~~e~A~ 153 (1167)
.++++..|++..... .-..++-+.|+-.+-+. ...++.+.+.+++.++...|.. -++.+.+|--+.+.|+|++|+
T Consensus 18 ~~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar 97 (144)
T 1y8m_A 18 YPQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 97 (144)
T ss_dssp CHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHH
Confidence 445666777666544 45677777776655543 2367789999999999999954 567777777889999999999
Q ss_pred HHHHHHHhccCCCHHH
Q 001064 154 EVYERAVQGVTYSVDI 169 (1167)
Q Consensus 154 ~l~eraL~~~P~s~~l 169 (1167)
+..+++|+..|.|...
T Consensus 98 ~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 98 RYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHTCCCCHHH
T ss_pred HHHHHHHhcCCCcHHH
Confidence 9999999999998543
No 476
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.69 E-value=0.22 Score=43.97 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=41.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHh
Q 001064 1033 SVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQA 1093 (1167)
Q Consensus 1033 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~ 1093 (1167)
.||+=++|.+....||.++|+.||.|. |.-.|. ..|||.|.+++.|..|+..
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv~---I~WidD------TsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNIQ---ISWIDD------TSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEEE---EEEEET------TEEEEEEEEECHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCEE---EEEEcC------CeEEEEecCHHHHHHHHHh
Confidence 344449999999999999999999543 433343 2799999999999999985
No 477
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.60 E-value=1.2 Score=54.94 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=86.8
Q ss_pred HHHHHHHcCC-hHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCC-HHHHHHHHHHHHHhhh-----------------
Q 001064 360 YLDFIERDGD-FNKVVKLYERCLIACANYPEYW-IRYVLCMEASGS-MDLAHNALARATHVFV----------------- 419 (1167)
Q Consensus 360 y~~~~e~~g~-~~~a~~~yeral~~~p~~~~~w-~~ya~~l~~~g~-~e~A~~vl~rA~~~~~----------------- 419 (1167)
++.+....++ ++.++.++++.....|...-+. ..++..++..++ --+|..++.++++...
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 3444444555 5789999999888877654322 223333333332 2357777777765321
Q ss_pred ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 420 KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANMERRLGNLEDAFSLYEQA 484 (1167)
Q Consensus 420 p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~e~r~g~~e~A~~~~~kA 484 (1167)
+....+...-++|+...|+++-|+.+-+++ +.+.|.....|..++..+..+|+++.|.-.+..+
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~A-V~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTS-TELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHH-HhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111235555688999999999999999998 8899999999999999999999999998766543
No 478
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=90.54 E-value=0.79 Score=43.17 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=62.4
Q ss_pred HhHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCC--Cc-ce--eEeeeeccccCCCceE
Q 001064 722 GSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLN--FT-AI--EIKTINSLGSWNGGVL 795 (1167)
Q Consensus 722 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~--~~-~~--~i~~~d~q~~~~~~i~ 795 (1167)
-...+..|+..++ .+.+.+..+|.++..+....+....|.. +|.+.+..+- +. .+ .|..+.. ..++.++
T Consensus 13 i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~~~~~G~~---ai~~~~~~~~~~~~~~~~~~~~~i~~--~~gd~a~ 87 (135)
T 3d9r_A 13 IEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGRPAAVGKD---ELAEVYLSVFETVGFDMAYEIKEVVQ--TSADWAF 87 (135)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTSCCEESHH---HHHHHHHHHHHHEEEEEEEEEEEEEE--EETTEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCCCcccCHH---HHHHHHHHHHhhcCCceeEEEEEEEE--ecCCEEE
Confidence 4578999999998 6789999999998666432222233444 4444444431 11 22 2333322 1122333
Q ss_pred EEE--EEEEEecCcccc--ceeEEEEEEeee-CCeEEEEcceEEec
Q 001064 796 VMV--SGSVKTKEFCRR--RKFVQTFFLAPQ-EKGYFVLNDIFHFL 836 (1167)
Q Consensus 796 v~v--~G~~~~~~~~~~--~~F~q~F~L~~~-~~~y~v~nd~fr~~ 836 (1167)
+.+ .|.++..+.... ..+.-++++..+ +++|.|..++|..+
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 88 VRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 333 233333211122 224567788888 88999999999765
No 479
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.47 E-value=0.14 Score=59.12 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=44.6
Q ss_pred CccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCCcccccEEEEEECCHHHHHHHHHhCCCeeeC
Q 001064 1030 EVKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKDVVGVCYAFVEFEDISGVQNAIQASPIQLAG 1100 (1167)
Q Consensus 1030 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~g~~kg~afV~F~~~~~a~~Al~~~~~~i~g 1100 (1167)
..++|||. +|..+++.+|.+.|++||+|.++. . ++..| .|+.|||.+.+++.+++...++...+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~--~-~~~~g---~~~~vef~~~~~~~~~~~~~~~p~~~ 115 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHF--F-YESFG---LYAVVEFCQKESIGSLQNGTHTPXXX 115 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEE--E-ECSSS---EEEEEECC---CCHHHHSSCCCCCCB
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEE--E-EccCC---eEEEEEeCCHHHHHHHHhccCCCccc
Confidence 35899997 799999999999999999999953 3 23222 59999999999999887665444443
No 480
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.70 E-value=3.7 Score=40.25 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChH---------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 391 WIRYVLCMEASGSMDLAHNALARATHVFVKRLPE---------IHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 391 w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~---------l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
.+.-+..+...+.++.|+-+...++.+. .+++. +...+|+.+...++|..|...|+++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444555667788999988888877765 33333 6777899999999999999999987
No 481
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=89.34 E-value=1.1 Score=44.72 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=68.2
Q ss_pred HhHHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc--ceeEeeeeccccCCCceEEEE
Q 001064 722 GSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT--AIEIKTINSLGSWNGGVLVMV 798 (1167)
Q Consensus 722 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~--~~~i~~~d~q~~~~~~i~v~v 798 (1167)
=..++..|+..++ .+.+.+..+|.++..++.+.|....|...|.+....+..-.+. .+.+...+.....++..++.+
T Consensus 18 I~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~A~v~~ 97 (172)
T 3cu3_A 18 IRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQLALMLV 97 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCCCCeEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCCCEEEEEE
Confidence 3568899999987 6899999999998777654565455555544333333222222 232222222222233344455
Q ss_pred EEEEEecCcc---ccceeEEEEEEeeeCCeEEEEcceEEe
Q 001064 799 SGSVKTKEFC---RRRKFVQTFFLAPQEKGYFVLNDIFHF 835 (1167)
Q Consensus 799 ~G~~~~~~~~---~~~~F~q~F~L~~~~~~y~v~nd~fr~ 835 (1167)
.+.+...+.. +...+..++++...+++|.|.+.-...
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~t~v~~r~dG~WrI~~~~~s~ 137 (172)
T 3cu3_A 98 VIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNTR 137 (172)
T ss_dssp EEEEECTTCSSBCGGGCBCCEEEEEEETTEEEEEEEECCB
T ss_pred EEEEEeCCCCCcCCccceEEEEEEEEeCCeEEEEEEEcCc
Confidence 5556655431 235567788888889999999876643
No 482
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.17 E-value=3.3 Score=51.96 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 001064 322 YKKAKEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAS 401 (1167)
Q Consensus 322 y~~~~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~ 401 (1167)
....++++.|....+. ++ +...|..+++...+.++++.|..+|.+|- +. -.+..++...
T Consensus 662 ~l~~~~~~~A~~~~~~-----------~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~----d~----~~l~~l~~~~ 720 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD-----------ES--AEMKWRALGDASLQRFNFKLAIEAFTNAH----DL----ESLFLLHSSF 720 (814)
T ss_dssp HHHHTCHHHHHHHHTT-----------CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT----CH----HHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHh-----------hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc----Ch----hhhHHHHHHc
Confidence 3455667766655432 22 24689999999999999999999999862 11 1222222334
Q ss_pred CCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001064 402 GSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLV 449 (1167)
Q Consensus 402 g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a 449 (1167)
++.+....+.+.+... .+ +.....++.+.|++++|.++|.++
T Consensus 721 ~~~~~~~~~~~~a~~~--~~----~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 721 NNKEGLVTLAKDAETT--GK----FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TCHHHHHHHHHHHHHT--TC----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc--Cc----hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5555444433333321 11 111222344567777777776653
No 483
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.93 E-value=2.7 Score=40.00 Aligned_cols=80 Identities=11% Similarity=-0.023 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHH
Q 001064 385 ANYPEYWIRYVLCMEASGSM---DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAI 461 (1167)
Q Consensus 385 p~~~~~w~~ya~~l~~~g~~---e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~ 461 (1167)
.-..+.-++||-.|.+..+. .+++.+++..+...+...-+..+.+|.-..+.|+|++|+...+.+ +++.|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l-L~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL-FEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH-HhcCCCcHHHH
Confidence 34567888888888776543 467778888777553245566677777788899999999999987 78899887664
Q ss_pred HHHH
Q 001064 462 IKHA 465 (1167)
Q Consensus 462 ~~~a 465 (1167)
....
T Consensus 115 ~Lk~ 118 (144)
T 1y8m_A 115 ALKS 118 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 484
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.44 E-value=4.9 Score=45.76 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHhCCCC------HHHHH----------------HHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHH
Q 001064 113 DNIVKIRRVYDAFLAEFPLC------YGYWK----------------KYADHEARVGSMDKVVEVYERAVQGVTYSVDIW 170 (1167)
Q Consensus 113 ~~~~~ar~~ye~~l~~~P~~------~~~W~----------------~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw 170 (1167)
++...+...++++|.++-.. ...|. .+++.+...|++++|+..+++++..+|.+..+|
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~ 208 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW 208 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 46677788888988887221 11132 345566778999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 001064 171 LHYCIFAINTYGDPETIRRLFERGLA 196 (1167)
Q Consensus 171 ~~ya~~~~~~~~~~~~Ar~~feral~ 196 (1167)
..++..+. ..|+..+|++.|+++-.
T Consensus 209 ~~lm~al~-~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 209 TQLITAYY-LSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 99999988 78999999999988765
No 485
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=87.08 E-value=2.2 Score=41.07 Aligned_cols=113 Identities=8% Similarity=0.058 Sum_probs=68.4
Q ss_pred hHHHHHHHHhhh-cCcccccccccCC--ceEEEEcCCcccchhchHHHHHHHhcCCCcceeEeeeeccccCC-CceEEEE
Q 001064 723 SYFVGQYYQVLQ-QQPDLVHQFYSDA--SSMIRVDGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWN-GGVLVMV 798 (1167)
Q Consensus 723 ~~Fv~~YY~~l~-~~p~~l~~fY~~~--s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~~-~~i~v~v 798 (1167)
..-...||.-|+ .+.+.|..+|.++ .++++..|....|...+.+--+.+...+ ..+.|+..|.+-..+ +..+|.+
T Consensus 11 ~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g~~l~G~~ai~~~w~~~f~~~-~~~~i~~~~v~v~~~gd~A~v~~ 89 (144)
T 3gwr_A 11 EAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLAAPLNGRAAVAAGWRSMFGAA-GRFRLQVKAVHEIRQADHVIRIV 89 (144)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTCCCEESHHHHHHHHHHHHHHH-CCEEEEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCCCCcccHHHHHHHHHHHHcCC-CcEEEEEEEEEEEecCCEEEEEE
Confidence 455788898886 7899999999987 4555655555666554433222222211 134444444333222 2345556
Q ss_pred EEEEEecCc-cccceeEEEEEEeeeCCeEEEEcceEEec
Q 001064 799 SGSVKTKEF-CRRRKFVQTFFLAPQEKGYFVLNDIFHFL 836 (1167)
Q Consensus 799 ~G~~~~~~~-~~~~~F~q~F~L~~~~~~y~v~nd~fr~~ 836 (1167)
...+...+. .....+.-|+++..++++|.|...--..+
T Consensus 90 ~e~~~~~~~~g~~~~~r~T~V~~r~~g~WrivhhH~S~~ 128 (144)
T 3gwr_A 90 DEFLTIGDETAPRPAILATNVYRREADGWRMVLHHASPL 128 (144)
T ss_dssp EEEEEETTCSSCCCCEEEEEEEEECSSSEEEEEEEEEEC
T ss_pred EEEEEecCCCCceeeEEEEEEEEEECCEEEEEEEecCCC
Confidence 666766322 12256778888888888999988766433
No 486
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.76 E-value=3.6 Score=48.12 Aligned_cols=169 Identities=7% Similarity=0.029 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHH----------H----HHHHHHhhhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 422 LPEIHLFAARFKEQNGDIDGA----------R----AAYQLVHTETSPG-LLEAIIKHANMERRLGNLEDAFSLYEQAIA 486 (1167)
Q Consensus 422 ~~~l~~~~a~~~e~~g~~~~A----------~----~~~~~a~~~~~P~-~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~ 486 (1167)
..++|+.+..+++..|++... | ..+..+.++.+.+ ...+|......+...+.++.|..+..++.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~- 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE- 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence 455677777777766655431 2 2333333444443 23456666667777889999999999885
Q ss_pred hhhCCCccC-chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCCH-------HHHHHHHHhHhhCCChhHHHHHHHH
Q 001064 487 IEKGKEHSQ-TLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLSK-------PLLEALIHFESIQSSPKQIDFLEQL 558 (1167)
Q Consensus 487 ~~~~~~~~~-~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~~-------~l~~~~~~~e~~~~~~~~~~~ar~l 558 (1167)
+|....+. .....+..+|++... .+++.+|.+.+..|+...|.+. .++.-++-..+-.|.-.. |.+
T Consensus 259 -fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~----r~l 332 (523)
T 4b4t_S 259 -YPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE----LSF 332 (523)
T ss_dssp -SCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC----HHH
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC----hHH
Confidence 44221111 112233455666554 9999999999999999887542 111112222222222111 222
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHhhhCC
Q 001064 559 VDKFLMSNSDSPSTANAAEREELSCVFLEFLG--LFGDAQLIKKAEDRHARLFLP 611 (1167)
Q Consensus 559 ~eral~~~~~~~~~l~~~~~~~i~~~~l~fe~--~~Gd~~~~~~v~~r~~~~~~~ 611 (1167)
|... .+ ...+.-|.++.. ..||+.....+.+++...|..
T Consensus 333 f~q~---------~l-----~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~ 373 (523)
T 4b4t_S 333 FHQS---------NM-----QKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLK 373 (523)
T ss_dssp HTTT---------SC-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHH
T ss_pred hhch---------hH-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceecc
Confidence 2210 00 012333444433 458999999999888888754
No 487
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.38 E-value=24 Score=40.85 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-hCCCccCc
Q 001064 423 PEIHLFAARFKEQNGDIDGARAAYQLVHTETSPG-----LLEAIIKHANMERRLGNLEDAFSLYEQAIAIE-KGKEHSQT 496 (1167)
Q Consensus 423 ~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~-----~~~~~~~~a~~e~r~g~~e~A~~~~~kAl~~~-~~~~~~~~ 496 (1167)
..+...++.+++..|++.+|..++..+..+..-. -.++++.-+.++...+|+.+|..+++++.... ....+...
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 4566788999999999999999999875543211 24567777888888999999999999986432 22111111
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 001064 497 LPMLYAQYSRFLHLVSRNAEKARQILVDSLDH 528 (1167)
Q Consensus 497 ~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~ 528 (1167)
...++...+.+.. ..+++.+|-..|..+++.
T Consensus 217 k~~~~~~~~~~~~-~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISL-HKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhc
Confidence 1223445565544 489999999999888764
No 488
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.46 E-value=5.1 Score=49.42 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhcCCHHHHHHH
Q 001064 136 WKKYADHEARVGSMDKVVEVYERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRL 190 (1167)
Q Consensus 136 W~~~a~~e~~~~~~e~A~~l~eraL~~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~ 190 (1167)
...-+++++..++++-|.++-++|+..-|..-.-|..++..++ ..++++.|+-.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi-~l~d~e~ALLt 393 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHI-KKEEYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHH-HhccHHHHHHH
Confidence 3333555566666666666666666666666666666666666 45666666543
No 489
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=84.43 E-value=1.7 Score=38.49 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=49.0
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcCCCceeeeEeeecCCC--cccccEEEEEECCHHHHHHHHHh-CCCeeeCc-----E
Q 001064 1031 VKSVYVRNLPSTVTAFEIEEEFQNFGRIKPDGVFVRNRKD--VVGVCYAFVEFEDISGVQNAIQA-SPIQLAGR-----Q 1102 (1167)
Q Consensus 1031 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~--g~~kg~afV~F~~~~~a~~Al~~-~~~~i~g~-----~ 1102 (1167)
+-+|.|+.||+.+|++++.+.++..=.+.... .+..+.+ ....+-|+|.|.+.+++..-.+. +|..+-+. +
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~-fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFE-FFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECC-CCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEE-EeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 46899999999999998766655433321111 1111111 11235789999999999988877 77776543 2
Q ss_pred eEEEec
Q 001064 1103 VYIEER 1108 (1167)
Q Consensus 1103 l~V~~~ 1108 (1167)
..||++
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445554
No 490
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=83.85 E-value=14 Score=35.63 Aligned_cols=111 Identities=11% Similarity=0.150 Sum_probs=62.1
Q ss_pred hhHhHHHHHHHHhhh-cCcccccccccCCceEEEE-cCCcccchhchHHHHHHHhcC----CCcceeEeeeeccccCCCc
Q 001064 720 QVGSYFVGQYYQVLQ-QQPDLVHQFYSDASSMIRV-DGDSTESASSMLDIHSLVISL----NFTAIEIKTINSLGSWNGG 793 (1167)
Q Consensus 720 ~vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~-~g~~~~~~~~~~~i~~~~~~l----~~~~~~i~~~d~q~~~~~~ 793 (1167)
+--...+..|+..++ .+.+.|..+|.++..++.. .+....|. ++|.+.+..+ +...+.+..+.. .++.
T Consensus 20 ~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~~~~~~G~---~~i~~~~~~~~~~~~~~~i~~~~i~~---~~gd 93 (156)
T 3h51_A 20 REVAALFDTWNAALATGNPHKVADLYAPDGVLLPTVSNEVRASR---EQIENYFEMFLTKKPKGVINYRTVRL---LDDD 93 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSCSSCBCSH---HHHHHHHHHHGGGCCEEEEEEEEEEE---CSSS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCCccccCH---HHHHHHHHHHHhhCCCCcccceEEEE---ecCC
Confidence 334677888998886 7899999999997655421 12223444 4455444432 211222223322 2222
Q ss_pred eEEEEEEEE--Ee---cCccccceeEEEEEEeeeCCeEEEEcceEEecc
Q 001064 794 VLVMVSGSV--KT---KEFCRRRKFVQTFFLAPQEKGYFVLNDIFHFLD 837 (1167)
Q Consensus 794 i~v~v~G~~--~~---~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~~~ 837 (1167)
+.+|+|.+ .. ++.........|+++...+++|.|..+-+..+.
T Consensus 94 -~A~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG~WkIv~~H~S~~p 141 (156)
T 3h51_A 94 -SAVDAGVYTFTLTDKNGKKSDVQARYTFVYEKRDGKWLIINHHSSAMP 141 (156)
T ss_dssp -EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred -eEEEEEEEEEEEEcCCCCeEEEEeEEEEEEEEECCEEEEEEEeecCCC
Confidence 33344443 32 121112334667777778999999998886654
No 491
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.83 E-value=3.6 Score=47.65 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcC-CChH----HHH
Q 001064 389 EYWIRYVLCMEASGSMDLAHNALARATHVFV--KRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETS-PGLL----EAI 461 (1167)
Q Consensus 389 ~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~--p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~-P~~~----~~~ 461 (1167)
..+..+|.++...|++++|.++|.++..... ....++++...++....+|+..+...+.++..... .++. .+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3677888888888888888888888776442 12345666666666677777777777777521111 1111 123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 001064 462 IKHANMERRLGNLEDAFSLYEQAIAIE 488 (1167)
Q Consensus 462 ~~~a~~e~r~g~~e~A~~~~~kAl~~~ 488 (1167)
...+.++...++|..|...|-.++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 334444555567777777777666554
No 492
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.95 E-value=3.7 Score=46.80 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001064 357 WHNYLDFIERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLAHNALARATH 416 (1167)
Q Consensus 357 W~~y~~~~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~ 416 (1167)
...+++.+...|++.+++..+++++..+|.+..+|..++..+...|+..+|+.+|+++..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555666777777777777777777777777777666666777777666666554
No 493
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.45 E-value=7.9 Score=44.71 Aligned_cols=96 Identities=9% Similarity=-0.015 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-Ch----HHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCLIACA---NYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKR-LP----EIH 426 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral~~~p---~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~-~~----~l~ 426 (1167)
..+..+++++.+.||++.|..+|.++...|. +-.++|+..+.+....+++..+...+.++..+.... ++ .+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4688999999999999999999999998874 345788888888888899999999999997765321 22 344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q 001064 427 LFAARFKEQNGDIDGARAAYQLVH 450 (1167)
Q Consensus 427 ~~~a~~~e~~g~~~~A~~~~~~a~ 450 (1167)
...+.++...+++..|...|-.++
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 445666667899999988887763
No 494
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.29 E-value=1e+02 Score=37.11 Aligned_cols=205 Identities=11% Similarity=0.062 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhhhcCCCcccCCCChhhHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 001064 326 KEFDSKIIGFETAIRRPYFHVKPLSVTELENWHNYLDF-IERDGDFNKVVKLYERCLIACANYPEYWIRYVLCMEASGSM 404 (1167)
Q Consensus 326 ~~~~~a~~~~e~al~r~~~~v~pld~~~~~~W~~y~~~-~e~~g~~~~a~~~yeral~~~p~~~~~w~~ya~~l~~~g~~ 404 (1167)
++.+.|...|....+. ..+++.+...+...+.+ ....+...++..++.+.+... .+..+....+.+....|+.
T Consensus 228 ~d~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 228 QDAENARLMIPSLAQA-----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-QSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp HCHHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHhhhhc-----cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC-CChHHHHHHHHHHHHCCCH
Confidence 3556676666655431 11444433322222322 223343557778888876553 4443333333344467999
Q ss_pred HHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----------hc------C-----CC---hHH
Q 001064 405 DLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHT-----------ET------S-----PG---LLE 459 (1167)
Q Consensus 405 e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~-----------~~------~-----P~---~~~ 459 (1167)
+.|...+.+..... .......+-.++.++..|+.++|..+|+++.. ++ . +. ...
T Consensus 302 ~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~ 380 (618)
T 1qsa_A 302 RGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALT 380 (618)
T ss_dssp HHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHH
T ss_pred HHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhc
Confidence 99999887665422 34455556667888999999999999987511 00 0 00 000
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHH---------------
Q 001064 460 --AIIKHANMERRLGNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQIL--------------- 522 (1167)
Q Consensus 460 --~~~~~a~~e~r~g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~--------------- 522 (1167)
--+..+..+...|....|...+..++.... +.-...++.+... .|..+.+....
T Consensus 381 ~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--------~~~~~~la~~a~~-~~~~~~~v~~~~~~~~~~~~~~~~P~ 451 (618)
T 1qsa_A 381 QGPEMARVRELMYWNLDNTARSEWANLVKSKS--------KTEQAQLARYAFN-NQWWDLSVQATIAGKLWDHLEERFPL 451 (618)
T ss_dssp HSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHH-TTCHHHHHHHHHHTTCTTCHHHHSCC
T ss_pred cChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--------HHHHHHHHHHHHH-CCChHHHHHHHHHHHhhcchhhhCCc
Confidence 124455566677888888887777665321 1122234444333 55555554333
Q ss_pred ------HHHHhhcCCCHHHHHHHHHhHhhC
Q 001064 523 ------VDSLDHVQLSKPLLEALIHFESIQ 546 (1167)
Q Consensus 523 ------~kal~~~p~~~~l~~~~~~~e~~~ 546 (1167)
+++.+...-++.+....+..|...
T Consensus 452 ~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f 481 (618)
T 1qsa_A 452 AYNDLFKRYTSGKEIPQSYAMAIARQESAW 481 (618)
T ss_dssp TTHHHHHHHHTTSSSCHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 233333344456666667777664
No 495
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.55 E-value=22 Score=37.65 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcCCChHHHHHHHHHH----HHH
Q 001064 395 VLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIKHANM----ERR 470 (1167)
Q Consensus 395 a~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a~~~e~~g~~~~A~~~~~~a~~~~~P~~~~~~~~~a~~----e~r 470 (1167)
+.-+.+.|++++|+..+...++.. |.+..+..++..+++-.|+++.|.+-++.+ .+++|+....-..|..+ ..|
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~-a~l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS-IKLFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCchhhHHHHHHHHHHHHHHHH
Q ss_pred c------------CCHHHHHHHHHHHHHhhhCCCccCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcCCC
Q 001064 471 L------------GNLEDAFSLYEQAIAIEKGKEHSQTLPMLYAQYSRFLHLVSRNAEKARQILVDSLDHVQLS 532 (1167)
Q Consensus 471 ~------------g~~e~A~~~~~kAl~~~~~~~~~~~~~~l~~~~a~~~~~~~g~~~~Ar~i~~kal~~~p~~ 532 (1167)
. |.-......+-+|+... ..|+.++|..+-.+|++.-|..
T Consensus 82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~----------------------~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEELTKSLVSFNLSM----------------------VSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHH----------------------HHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHcCCCCCCCCCCCHHHHHHHHHHHHHh----------------------hcCCHHHHHHHHHHHHhcCccc
No 496
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=77.87 E-value=10 Score=34.92 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=56.0
Q ss_pred HHHHHHHHhhh-cCcccccccc--cCCceEEEEcCCcccchhchHHHHHHHhc-CC--C--cceeEeeeeccccCCCceE
Q 001064 724 YFVGQYYQVLQ-QQPDLVHQFY--SDASSMIRVDGDSTESASSMLDIHSLVIS-LN--F--TAIEIKTINSLGSWNGGVL 795 (1167)
Q Consensus 724 ~Fv~~YY~~l~-~~p~~l~~fY--~~~s~~~~~~g~~~~~~~~~~~i~~~~~~-l~--~--~~~~i~~~d~q~~~~~~i~ 795 (1167)
.-++.+|.-++ .+.+.+..+| .+...++..+| ...|. ++|.+.... ++ + ..+.+..++.+.. ++.+
T Consensus 9 ~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~~-~~~G~---~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~-~~~~- 82 (122)
T 3b7c_A 9 QLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-FRNGW---DETLAAYKKNYPDKESLGELKFTIKEIKML-SNYA- 82 (122)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-EEECH---HHHHHHHHHHCSSGGGSCEEEEEEEEEEEE-ETTE-
T ss_pred HHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCCc-cccCH---HHHHHHHHHhcCChhhcCeeEEEEEEEEEc-CCCE-
Confidence 34667777665 7899999999 66555543222 23444 444443332 22 1 2234444454433 2223
Q ss_pred EEEEEEEEecCccccceeEEEEEEeeeCCeEEEEcce
Q 001064 796 VMVSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDI 832 (1167)
Q Consensus 796 v~v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~ 832 (1167)
.+|.|.+.............|+++..++++|.|..+-
T Consensus 83 a~v~~~~~~~~~~~~~~~r~T~v~~k~~g~W~Iv~~H 119 (122)
T 3b7c_A 83 AMVVGRWDLKRLKDTPTGVFTLLVEKIDDRWVITMDH 119 (122)
T ss_dssp EEEEEEEEEECSSCCCEEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEccCCCCCcEEEEEEEEeCCCEEEEEEe
Confidence 3344544433210122346788999999999998764
No 497
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=77.86 E-value=14 Score=46.93 Aligned_cols=99 Identities=4% Similarity=-0.091 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCCCCCHHHH
Q 001064 133 YGYWKKYADHEARVGSMDKVVEVYERAVQ----GVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLW 208 (1167)
Q Consensus 133 ~~~W~~~a~~e~~~~~~e~A~~l~eraL~----~~P~s~~lw~~ya~~~~~~~~~~~~Ar~~feral~~~g~d~~s~~lw 208 (1167)
.-.+..+++.+.+.|++++|.++|+++-. ....++..|-..+.-+. ..|+.++|+++|+++.. .|..+. ...|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glc-k~G~~~eA~~Lf~eM~~-~G~~PD-vvTY 203 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA-RQGAFKELVYVLFMVKD-AGLTPD-LLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHH-TTCCCC-HHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHH-hCCCHHHHHHHHHHHHH-cCCCCc-HHHH
Confidence 34577888888999999999999976542 23456777777777666 57899999999998876 444432 4567
Q ss_pred HHHHHHHHHhhh-HHHHHHHHHHHHhc
Q 001064 209 DKYIEYEYMQQE-WSRVAMIYTRILEN 234 (1167)
Q Consensus 209 ~~y~~~e~~~~~-~~~A~~iy~r~l~~ 234 (1167)
...|..+-+.|+ .++|.++|+.+...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 777776666666 47788888888774
No 498
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=77.42 E-value=16 Score=46.28 Aligned_cols=95 Identities=5% Similarity=-0.101 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH----HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhccChHHHHHHH
Q 001064 355 ENWHNYLDFIERDGDFNKVVKLYERCL----IACANYPEYWIRYVLCMEASGSMDLAHNALARATHVFVKRLPEIHLFAA 430 (1167)
Q Consensus 355 ~~W~~y~~~~e~~g~~~~a~~~yeral----~~~p~~~~~w~~ya~~l~~~g~~e~A~~vl~rA~~~~~p~~~~l~~~~a 430 (1167)
..+..+++.+-+.|+.++|..+|++.. ..+.-+.-.|.-++.-+.+.|++++|.++|++..+.-..-+.-.|....
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 357777777778888888888886533 2345566778888887888888888888887776533223445555555
Q ss_pred HHHHHcCC-HHHHHHHHHHH
Q 001064 431 RFKEQNGD-IDGARAAYQLV 449 (1167)
Q Consensus 431 ~~~e~~g~-~~~A~~~~~~a 449 (1167)
..+.+.|+ .++|..+|+..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHH
Confidence 56677776 46777777775
No 499
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=74.16 E-value=15 Score=33.78 Aligned_cols=101 Identities=9% Similarity=0.083 Sum_probs=66.4
Q ss_pred HHHHHHHHhhh-cCcccccccccCCceEEEEcCCcccchhchHHHHHHHhcCCCc-----ceeEeeeeccccCCCceEEE
Q 001064 724 YFVGQYYQVLQ-QQPDLVHQFYSDASSMIRVDGDSTESASSMLDIHSLVISLNFT-----AIEIKTINSLGSWNGGVLVM 797 (1167)
Q Consensus 724 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~g~~~~~~~~~~~i~~~~~~l~~~-----~~~i~~~d~q~~~~~~i~v~ 797 (1167)
+-|..|+.-++ .+++.|.+-|++.+.+..+.+.... ...+.+..+ +..-|.. ...|.++|... +.-++.
T Consensus 13 ~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~~g~~~-~~~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~g---d~A~a~ 87 (120)
T 3fka_A 13 ALVETYVMAMTRGDRPALERIFFGKASEVGHYEGELL-WNSRDAFIA-MCEDAADAETDPFWAISSVSVQG---DIAMLH 87 (120)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEETTEEE-EEEHHHHHH-HHHHHCCSSCCCCEEEEEEEEET---TEEEEE
T ss_pred HHHHHHHHHHHhcCHHHHHhhCCCCeEEEEecCCcEE-EcCHHHHHh-hcCCccCCCCCceEEEEEEEEEC---CEEEEE
Confidence 44889998887 6899999999999888655533322 123333333 3322222 23577777644 233333
Q ss_pred EEEEEEecCccccceeEEEEEEeeeCCeEEEEcceEEe
Q 001064 798 VSGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFHF 835 (1167)
Q Consensus 798 v~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr~ 835 (1167)
|. +.. ....|+..|.|...+++|-|.|=+|.+
T Consensus 88 v~--~~~----~~~~f~D~~~L~k~dg~WkIv~K~~~~ 119 (120)
T 3fka_A 88 VE--NDW----AGMRFDDFLTVLLHEGSWRIVSKVYRI 119 (120)
T ss_dssp EE--EEE----TTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EE--EEc----CCCceEEEEEEEEeCCEEEEEEEEEEc
Confidence 44 222 246899999999999999999999975
No 500
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=73.62 E-value=22 Score=32.95 Aligned_cols=110 Identities=7% Similarity=0.035 Sum_probs=57.8
Q ss_pred hhHhHHHHHHHHhhhcCcccccccccCCceEEEE-cCCcccchhchHHHHHHHhcCCCcceeEeeeeccccCCCceEEEE
Q 001064 720 QVGSYFVGQYYQVLQQQPDLVHQFYSDASSMIRV-DGDSTESASSMLDIHSLVISLNFTAIEIKTINSLGSWNGGVLVMV 798 (1167)
Q Consensus 720 ~vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~-~g~~~~~~~~~~~i~~~~~~l~~~~~~i~~~d~q~~~~~~i~v~v 798 (1167)
+|-..|.+..--+...+.+.|..+|.+...++.+ .|....|...+.+....+...+. ..++..+......++ ..+|
T Consensus 15 ei~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~d--~A~~ 91 (129)
T 2rcd_A 15 DVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGAGENLYGIEEIRAFRLARPSAGL-DRALRNTVITTYGHD--MAVA 91 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEETTEEEESHHHHHHHHHHSCCTTC-CCEEEEEEEEEBTTS--EEEE
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEECCCCccCCHHHHHHHHHhcCCCCC-ceEEEEEEEEEecCc--EEEE
Confidence 4444444333334458999999999997665433 34344555544442222221112 223333332222222 2334
Q ss_pred EEEEEecCccccceeEEEEEEeeeCCeEEEEcceEE
Q 001064 799 SGSVKTKEFCRRRKFVQTFFLAPQEKGYFVLNDIFH 834 (1167)
Q Consensus 799 ~G~~~~~~~~~~~~F~q~F~L~~~~~~y~v~nd~fr 834 (1167)
+......+. ...+.+|+++...+++|.|.+.-..
T Consensus 92 ~~~~~~~~~--~~~g~~t~v~~r~~~gWrIv~~H~S 125 (129)
T 2rcd_A 92 STEFTRTGS--TKIGRQMQTWVKMPEGWRIVAAHVS 125 (129)
T ss_dssp EEEEECSSC--CSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEcCC--CCceeEEEEEEECCCcEEEEEEecC
Confidence 445444432 2446678888889999999886543
Done!