Query 001065
Match_columns 1167
No_of_seqs 361 out of 1041
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 14:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1948 Metalloproteinase-rela 100.0 4E-218 9E-223 1866.4 103.0 1090 3-1160 4-1116(1165)
2 KOG1948 Metalloproteinase-rela 100.0 2.8E-51 6.1E-56 477.4 75.2 906 47-1167 129-1132(1165)
3 COG4932 Predicted outer membra 100.0 4.7E-28 1E-32 293.5 34.8 403 45-479 979-1416(1531)
4 COG4932 Predicted outer membra 100.0 1.1E-26 2.3E-31 281.8 34.8 408 418-1030 986-1424(1531)
5 PF13620 CarboxypepD_reg: Carb 98.9 6.9E-09 1.5E-13 94.9 8.5 76 327-402 1-81 (82)
6 PF13620 CarboxypepD_reg: Carb 98.8 1.6E-08 3.5E-13 92.4 8.0 74 127-210 1-74 (82)
7 PF05738 Cna_B: Cna protein B- 98.3 1.4E-06 3.1E-11 77.2 6.2 61 51-111 1-64 (70)
8 PF13715 DUF4480: Domain of un 98.1 1E-05 2.2E-10 75.1 9.1 58 327-385 1-60 (88)
9 PF05738 Cna_B: Cna protein B- 98.1 1E-05 2.2E-10 71.7 8.4 61 148-209 1-65 (70)
10 PF13715 DUF4480: Domain of un 98.0 3.8E-05 8.3E-10 71.2 10.7 58 127-196 1-58 (88)
11 cd03863 M14_CPD_II The second 97.9 3.1E-05 6.7E-10 90.8 9.1 75 326-402 297-373 (375)
12 PF07210 DUF1416: Protein of u 97.7 0.00012 2.5E-09 65.4 8.0 58 127-194 9-66 (85)
13 cd06245 M14_CPD_III The third 97.7 8.7E-05 1.9E-09 86.8 9.1 74 326-401 287-360 (363)
14 cd03865 M14_CPE_H Peptidase M1 97.7 8.1E-05 1.8E-09 87.5 8.6 73 327-401 327-400 (402)
15 cd03864 M14_CPN Peptidase M14 97.7 0.0001 2.2E-09 86.9 8.8 73 326-400 316-389 (392)
16 cd03863 M14_CPD_II The second 97.6 0.00024 5.1E-09 83.4 9.7 86 851-943 290-375 (375)
17 cd03868 M14_CPD_I The first ca 97.5 0.00019 4.2E-09 84.7 8.1 68 326-394 296-364 (372)
18 PF07210 DUF1416: Protein of u 97.5 0.00049 1.1E-08 61.6 7.9 56 222-294 9-64 (85)
19 PF08400 phage_tail_N: Prophag 97.4 0.0006 1.3E-08 67.5 8.2 67 326-393 3-80 (134)
20 PRK15036 hydroxyisourate hydro 97.3 0.00052 1.1E-08 68.9 7.2 62 127-195 28-96 (137)
21 cd03866 M14_CPM Peptidase M14 97.3 0.00068 1.5E-08 79.8 9.2 65 326-392 295-362 (376)
22 cd03858 M14_CP_N-E_like Carbox 97.3 0.0006 1.3E-08 80.7 8.7 59 326-385 298-357 (374)
23 PF08400 phage_tail_N: Prophag 97.3 0.0013 2.8E-08 65.2 9.3 62 126-196 3-70 (134)
24 cd03867 M14_CPZ Peptidase M14- 97.2 0.00075 1.6E-08 80.1 8.4 65 326-392 318-383 (395)
25 cd03864 M14_CPN Peptidase M14 97.2 0.0011 2.5E-08 78.2 9.0 80 854-941 312-391 (392)
26 cd06245 M14_CPD_III The third 97.1 0.0021 4.6E-08 75.4 9.9 79 854-941 283-361 (363)
27 cd03865 M14_CPE_H Peptidase M1 97.0 0.0018 3.9E-08 76.3 9.0 79 855-941 323-401 (402)
28 PRK15036 hydroxyisourate hydro 96.9 0.0016 3.5E-08 65.5 5.8 55 327-381 28-95 (137)
29 cd03866 M14_CPM Peptidase M14 96.9 0.0036 7.8E-08 73.8 9.5 68 126-207 295-362 (376)
30 KOG2649 Zinc carboxypeptidase 96.7 0.0041 8.9E-08 72.9 8.0 76 327-404 379-455 (500)
31 KOG0518 Actin-binding cytoskel 96.7 1.7 3.6E-05 55.9 30.8 266 165-459 623-927 (1113)
32 PF14686 fn3_3: Polysaccharide 96.6 0.0097 2.1E-07 56.2 8.2 76 127-208 4-87 (95)
33 cd03869 M14_CPX_like Peptidase 96.5 0.005 1.1E-07 72.7 7.1 64 327-392 330-394 (405)
34 PF14686 fn3_3: Polysaccharide 96.4 0.0088 1.9E-07 56.5 6.8 54 326-379 3-70 (95)
35 TIGR02962 hdxy_isourate hydrox 96.3 0.0093 2E-07 57.9 6.7 60 128-194 3-70 (112)
36 cd00421 intradiol_dioxygenase 96.3 0.01 2.3E-07 60.6 7.5 53 126-186 12-80 (146)
37 cd03868 M14_CPD_I The first ca 96.3 0.012 2.5E-07 69.8 8.8 81 852-940 290-371 (372)
38 COG2373 Large extracellular al 96.1 4.9 0.00011 55.8 33.1 184 144-346 316-535 (1621)
39 KOG0518 Actin-binding cytoskel 96.1 7 0.00015 50.5 41.8 129 54-194 392-530 (1113)
40 cd03858 M14_CP_N-E_like Carbox 96.1 0.021 4.5E-07 67.7 9.4 77 856-940 296-373 (374)
41 COG3485 PcaH Protocatechuate 3 95.9 0.01 2.2E-07 64.4 5.4 52 325-376 72-146 (226)
42 COG2373 Large extracellular al 95.8 15 0.00031 51.4 38.5 232 47-290 316-599 (1621)
43 cd03867 M14_CPZ Peptidase M14- 95.7 0.031 6.7E-07 66.6 9.0 78 855-940 315-394 (395)
44 PF11974 MG1: Alpha-2-macroglo 95.6 0.036 7.7E-07 52.6 7.2 45 144-189 24-69 (97)
45 TIGR02962 hdxy_isourate hydrox 95.4 0.023 5E-07 55.2 5.1 54 328-381 3-70 (112)
46 PF00775 Dioxygenase_C: Dioxyg 95.3 0.026 5.7E-07 59.8 5.7 49 326-374 30-99 (183)
47 cd03464 3,4-PCD_beta Protocate 95.3 0.021 4.5E-07 62.0 4.8 48 326-373 66-137 (220)
48 PF00775 Dioxygenase_C: Dioxyg 95.1 0.075 1.6E-06 56.4 8.3 68 221-289 30-99 (183)
49 PF09430 DUF2012: Protein of u 95.1 0.047 1E-06 54.2 6.4 51 340-391 7-61 (123)
50 cd05822 TLP_HIUase HIUase (5-h 95.1 0.054 1.2E-06 52.7 6.6 51 144-194 12-70 (112)
51 cd03459 3,4-PCD Protocatechuat 94.8 0.042 9.2E-07 56.8 5.4 48 326-373 16-87 (158)
52 TIGR02465 chlorocat_1_2 chloro 94.8 0.028 6.1E-07 62.0 4.4 48 326-373 99-165 (246)
53 TIGR02422 protocat_beta protoc 94.8 0.043 9.4E-07 59.6 5.6 48 326-373 61-132 (220)
54 cd00421 intradiol_dioxygenase 94.7 0.059 1.3E-06 55.2 6.2 51 946-996 12-78 (146)
55 cd03458 Catechol_intradiol_dio 94.7 0.036 7.9E-07 61.5 4.9 49 326-374 105-172 (256)
56 TIGR02438 catachol_actin catec 94.7 0.033 7.1E-07 62.5 4.5 48 326-373 133-199 (281)
57 PF10670 DUF4198: Domain of un 94.7 0.11 2.3E-06 56.4 8.5 64 219-293 149-212 (215)
58 PF11974 MG1: Alpha-2-macroglo 94.7 0.18 4E-06 47.8 8.9 64 937-1002 4-69 (97)
59 cd03459 3,4-PCD Protocatechuat 94.7 0.087 1.9E-06 54.6 7.3 68 221-288 16-87 (158)
60 cd03463 3,4-PCD_alpha Protocat 94.6 0.049 1.1E-06 57.8 5.4 48 326-373 37-107 (185)
61 cd03460 1,2-CTD Catechol 1,2 d 94.6 0.04 8.6E-07 61.9 4.9 48 326-373 125-191 (282)
62 PF08308 PEGA: PEGA domain; I 94.6 0.12 2.6E-06 45.9 7.0 58 340-402 10-67 (71)
63 TIGR02439 catechol_proteo cate 94.6 0.042 9.1E-07 61.8 5.0 48 326-373 129-195 (285)
64 COG2351 Transthyretin-like pro 94.5 0.065 1.4E-06 51.5 5.4 61 127-194 10-78 (124)
65 PF09430 DUF2012: Protein of u 94.5 0.11 2.4E-06 51.5 7.4 56 146-206 5-61 (123)
66 cd03463 3,4-PCD_alpha Protocat 94.5 0.092 2E-06 55.7 7.2 66 221-288 37-107 (185)
67 cd05821 TLP_Transthyretin Tran 94.5 0.084 1.8E-06 51.8 6.2 60 128-194 9-76 (121)
68 cd03461 1,2-HQD Hydroxyquinol 94.5 0.046 9.9E-07 61.4 4.9 49 326-374 121-188 (277)
69 cd03462 1,2-CCD chlorocatechol 94.4 0.044 9.5E-07 60.4 4.7 48 326-373 100-166 (247)
70 cd05469 Transthyretin_like Tra 94.4 0.099 2.1E-06 50.8 6.4 60 128-194 3-70 (113)
71 TIGR02465 chlorocat_1_2 chloro 94.4 0.097 2.1E-06 57.9 7.3 65 221-288 99-165 (246)
72 COG3485 PcaH Protocatechuate 3 94.4 0.066 1.4E-06 58.2 5.8 71 945-1025 72-160 (226)
73 cd03458 Catechol_intradiol_dio 94.1 0.14 3.1E-06 56.8 7.9 55 126-188 105-173 (256)
74 TIGR02423 protocat_alph protoc 94.1 0.077 1.7E-06 56.7 5.5 48 326-373 40-111 (193)
75 PF10670 DUF4198: Domain of un 94.0 0.17 3.6E-06 54.9 8.2 57 125-190 150-211 (215)
76 smart00095 TR_THY Transthyreti 93.9 0.14 3E-06 50.4 6.4 60 128-194 6-73 (121)
77 cd03462 1,2-CCD chlorocatechol 93.9 0.12 2.7E-06 57.0 6.8 67 221-289 100-167 (247)
78 TIGR02439 catechol_proteo cate 93.8 0.12 2.6E-06 58.2 6.7 67 221-289 129-196 (285)
79 PF00576 Transthyretin: HIUase 93.8 0.065 1.4E-06 52.1 4.0 59 128-193 3-70 (112)
80 cd03460 1,2-CTD Catechol 1,2 d 93.8 0.12 2.7E-06 58.0 6.6 67 221-289 125-192 (282)
81 cd03464 3,4-PCD_beta Protocate 93.6 0.18 4E-06 54.8 7.4 68 221-288 66-137 (220)
82 TIGR02438 catachol_actin catec 93.6 0.1 2.2E-06 58.7 5.5 52 947-999 134-199 (281)
83 TIGR02422 protocat_beta protoc 93.4 0.21 4.5E-06 54.5 7.4 68 221-288 61-132 (220)
84 TIGR02423 protocat_alph protoc 93.4 0.21 4.6E-06 53.4 7.3 66 221-288 40-111 (193)
85 cd03461 1,2-HQD Hydroxyquinol 93.4 0.19 4.1E-06 56.5 7.2 67 221-289 121-188 (277)
86 KOG2649 Zinc carboxypeptidase 93.2 0.19 4.1E-06 59.4 7.2 65 127-207 379-443 (500)
87 TIGR00864 PCC polycystin catio 93.0 65 0.0014 46.9 54.5 173 443-638 1831-2022(2740)
88 cd03869 M14_CPX_like Peptidase 93.0 0.28 6E-06 58.3 8.2 65 126-206 329-393 (405)
89 PF08308 PEGA: PEGA domain; I 92.0 0.84 1.8E-05 40.4 8.2 60 875-944 11-70 (71)
90 KOG3006 Transthyretin and rela 91.8 1 2.2E-05 43.5 8.6 62 125-193 20-89 (132)
91 PF00576 Transthyretin: HIUase 91.0 0.59 1.3E-05 45.6 6.5 90 859-949 2-110 (112)
92 cd05821 TLP_Transthyretin Tran 90.7 0.54 1.2E-05 46.3 6.0 57 223-291 9-71 (121)
93 cd05469 Transthyretin_like Tra 90.5 0.5 1.1E-05 46.0 5.5 53 328-380 3-69 (113)
94 PRK15235 outer membrane fimbri 90.3 4.2 9.1E-05 53.2 15.4 111 890-1001 668-784 (814)
95 cd05822 TLP_HIUase HIUase (5-h 90.3 0.95 2.1E-05 44.1 7.2 90 859-949 2-109 (112)
96 PF01060 DUF290: Transthyretin 89.9 0.72 1.6E-05 42.1 5.8 55 224-290 1-55 (80)
97 PF02369 Big_1: Bacterial Ig-l 89.9 1.1 2.4E-05 42.7 7.3 54 326-379 25-90 (100)
98 smart00095 TR_THY Transthyreti 89.7 0.77 1.7E-05 45.2 6.1 57 223-291 6-68 (121)
99 PF01060 DUF290: Transthyretin 89.6 0.51 1.1E-05 43.1 4.6 37 956-992 7-47 (80)
100 COG2351 Transthyretin-like pro 88.8 0.8 1.7E-05 44.3 5.3 54 327-380 10-77 (124)
101 COG3188 FimD P pilus assembly 88.4 5.1 0.00011 52.4 14.1 107 891-1001 694-806 (835)
102 PF02369 Big_1: Bacterial Ig-l 88.4 2 4.3E-05 41.0 7.9 62 127-196 26-94 (100)
103 cd03457 intradiol_dioxygenase_ 88.1 1.4 3.1E-05 46.9 7.4 65 221-287 27-100 (188)
104 cd03457 intradiol_dioxygenase_ 87.5 0.89 1.9E-05 48.5 5.4 54 126-186 27-101 (188)
105 cd00222 CollagenBindB Collagen 87.5 38 0.00083 36.2 17.5 125 52-196 23-171 (187)
106 smart00634 BID_1 Bacterial Ig- 87.0 2.2 4.7E-05 40.0 7.1 55 327-381 21-86 (92)
107 PF11589 DUF3244: Domain of un 85.2 2.2 4.8E-05 41.1 6.3 49 50-98 46-99 (106)
108 COG1470 Predicted membrane pro 85.0 98 0.0021 37.4 23.6 80 856-945 185-265 (513)
109 PF10794 DUF2606: Protein of u 84.5 2.5 5.3E-05 40.9 6.0 53 327-379 43-108 (131)
110 PRK15207 long polar fimbrial o 84.4 15 0.00033 48.4 15.4 108 891-1001 698-811 (842)
111 PRK15294 putative fimbrial out 83.8 13 0.00029 49.0 14.6 108 891-1001 701-814 (845)
112 COG5266 CbiK ABC-type Co2+ tra 83.7 3.7 7.9E-05 45.2 7.8 60 124-192 170-242 (264)
113 PF07495 Y_Y_Y: Y_Y_Y domain; 82.7 2.7 5.8E-05 36.4 5.3 24 532-555 24-48 (66)
114 PRK15223 pilin outer membrane 82.3 17 0.00038 47.8 14.8 108 890-1001 695-808 (836)
115 PF07495 Y_Y_Y: Y_Y_Y domain; 81.4 2.9 6.3E-05 36.1 5.1 25 270-294 24-49 (66)
116 PRK15298 fimbrial outer membra 81.3 22 0.00047 47.0 15.1 108 891-1001 707-820 (848)
117 PF01190 Pollen_Ole_e_I: Polle 80.7 2.2 4.7E-05 40.4 4.3 35 955-989 16-54 (97)
118 cd00222 CollagenBindB Collagen 80.5 86 0.0019 33.6 20.2 119 145-291 19-162 (187)
119 COG5266 CbiK ABC-type Co2+ tra 80.3 6.5 0.00014 43.4 8.1 73 220-295 171-243 (264)
120 KOG4802 Adhesion-type protein 80.1 8.5 0.00018 44.9 9.3 111 893-1008 205-338 (516)
121 PRK15198 outer membrane usher 79.1 27 0.0006 46.1 15.0 105 891-1001 715-825 (860)
122 smart00634 BID_1 Bacterial Ig- 78.9 7.2 0.00016 36.4 7.1 63 855-919 17-86 (92)
123 PF12866 DUF3823: Protein of u 77.0 20 0.00044 39.3 10.9 83 320-405 16-114 (222)
124 PRK15248 fimbrial outer membra 76.8 30 0.00066 45.7 14.4 106 891-1001 710-821 (853)
125 PRK09828 putative fimbrial out 76.4 34 0.00074 45.4 14.8 106 891-1001 718-829 (865)
126 PRK15273 putative fimbrial out 75.9 41 0.00089 44.6 15.2 106 891-1001 683-794 (881)
127 PF00041 fn3: Fibronectin type 75.8 12 0.00027 33.2 7.6 50 956-1005 26-77 (85)
128 PRK15304 putative fimbrial out 75.5 37 0.00081 44.6 14.7 105 891-1000 659-769 (801)
129 PRK15284 putative fimbrial out 75.1 42 0.00091 44.6 15.1 106 891-1001 706-817 (881)
130 PRK15213 fimbrial outer membra 74.9 45 0.00098 43.8 15.3 104 890-999 665-774 (797)
131 PRK15255 fimbrial outer membra 74.7 36 0.00077 44.9 14.2 107 892-1002 690-802 (829)
132 KOG3006 Transthyretin and rela 71.7 28 0.00062 33.9 8.9 91 858-949 21-129 (132)
133 PF01190 Pollen_Ole_e_I: Polle 71.3 11 0.00024 35.6 6.3 40 145-185 18-61 (97)
134 PF10794 DUF2606: Protein of u 69.6 17 0.00037 35.4 6.9 74 113-194 29-110 (131)
135 PRK15217 fimbrial outer membra 69.2 69 0.0015 42.3 15.0 108 889-1001 688-801 (826)
136 PRK15193 outer membrane usher 69.0 61 0.0013 43.0 14.5 106 890-1001 734-845 (876)
137 TIGR00864 PCC polycystin catio 68.9 6.1E+02 0.013 37.8 52.9 59 990-1053 2326-2394(2740)
138 PRK15310 fimbrial outer membra 67.6 47 0.001 43.1 12.2 36 326-363 786-821 (895)
139 PRK15207 long polar fimbrial o 66.8 66 0.0014 42.6 14.1 107 268-375 698-811 (842)
140 PRK06655 flgD flagellar basal 66.6 32 0.0007 37.9 9.5 45 146-190 123-178 (225)
141 PF06427 UDP-g_GGTase: UDP-glu 66.2 15 0.00032 40.1 6.8 70 84-160 126-200 (211)
142 PRK12813 flgD flagellar basal 65.9 26 0.00056 38.6 8.6 45 146-190 121-173 (223)
143 PF13860 FlgD_ig: FlgD Ig-like 62.9 21 0.00046 32.5 6.2 45 146-190 22-77 (81)
144 PF01835 A2M_N: MG2 domain; I 62.2 36 0.00078 31.9 7.9 42 150-191 37-86 (99)
145 PRK15304 putative fimbrial out 61.1 81 0.0018 41.5 13.4 107 267-374 658-769 (801)
146 PRK15223 pilin outer membrane 59.6 98 0.0021 41.0 13.8 108 267-375 695-808 (836)
147 PF11589 DUF3244: Domain of un 58.9 31 0.00068 33.2 6.9 48 146-193 45-96 (106)
148 PRK15284 putative fimbrial out 58.3 99 0.0022 41.2 13.5 107 268-375 706-817 (881)
149 PF10179 DUF2369: Uncharacteri 58.1 2E+02 0.0044 33.1 14.1 114 982-1102 13-147 (300)
150 PF12866 DUF3823: Protein of u 56.5 76 0.0016 34.9 10.1 85 120-211 16-106 (222)
151 COG3188 FimD P pilus assembly 56.1 2.4E+02 0.0053 37.3 16.3 103 267-370 693-800 (835)
152 PF14900 DUF4493: Domain of un 55.8 1.8E+02 0.0039 32.1 13.3 88 903-990 61-160 (235)
153 PRK15248 fimbrial outer membra 55.2 95 0.002 41.2 12.6 107 268-375 710-821 (853)
154 TIGR03503 conserved hypothetic 54.8 4.4E+02 0.0094 31.4 18.8 48 533-590 168-219 (374)
155 PF13750 Big_3_3: Bacterial Ig 54.4 2.7E+02 0.0059 28.9 14.0 106 444-555 7-132 (158)
156 PRK15273 putative fimbrial out 52.6 1.5E+02 0.0032 39.6 13.7 107 268-375 683-794 (881)
157 PRK15213 fimbrial outer membra 52.2 1.7E+02 0.0037 38.5 14.2 105 267-373 665-774 (797)
158 PF13860 FlgD_ig: FlgD Ig-like 52.1 30 0.00066 31.5 5.3 44 50-93 23-77 (81)
159 PF05688 DUF824: Salmonella re 50.9 22 0.00047 29.2 3.6 29 859-887 14-42 (47)
160 KOG0196 Tyrosine kinase, EPH ( 50.0 1.4E+02 0.003 38.6 11.8 114 984-1102 398-517 (996)
161 PF14347 DUF4399: Domain of un 49.7 36 0.00077 31.8 5.3 48 331-379 25-72 (87)
162 PRK15217 fimbrial outer membra 49.6 1.7E+02 0.0036 38.8 13.5 109 266-375 688-801 (826)
163 PRK12813 flgD flagellar basal 49.5 37 0.00081 37.3 6.3 44 50-93 122-173 (223)
164 PRK09619 flgD flagellar basal 48.2 98 0.0021 34.0 9.4 44 146-190 120-171 (218)
165 KOG1692 Putative cargo transpo 48.2 30 0.00066 36.6 5.1 60 50-110 53-112 (201)
166 PF10179 DUF2369: Uncharacteri 47.6 1.6E+02 0.0035 33.9 11.1 75 924-1002 58-146 (300)
167 KOG2740 Clathrin-associated pr 47.4 2E+02 0.0044 33.6 11.7 124 857-989 288-417 (418)
168 PRK06655 flgD flagellar basal 47.3 36 0.00078 37.5 5.9 44 50-93 124-178 (225)
169 PF03272 Enhancin: Viral enhan 47.2 1.5E+02 0.0033 38.7 12.3 83 858-944 445-531 (775)
170 PRK15294 putative fimbrial out 45.4 1.9E+02 0.0041 38.4 13.1 107 268-375 701-814 (845)
171 smart00060 FN3 Fibronectin typ 44.6 38 0.00082 28.4 4.6 26 979-1004 52-77 (83)
172 PRK15310 fimbrial outer membra 44.5 1.7E+02 0.0036 38.3 11.6 120 854-989 692-822 (895)
173 KOG3306 Predicted membrane pro 44.4 33 0.00071 35.6 4.5 41 343-385 13-56 (185)
174 PF11008 DUF2846: Protein of u 44.2 38 0.00081 33.2 4.9 38 340-378 40-77 (117)
175 PF01835 A2M_N: MG2 domain; I 42.9 92 0.002 29.1 7.2 43 52-94 36-86 (99)
176 PF09912 DUF2141: Uncharacteri 42.4 30 0.00066 33.8 3.9 36 531-572 38-73 (112)
177 PF13953 PapC_C: PapC C-termin 41.7 42 0.00091 29.5 4.4 45 331-375 2-49 (68)
178 PRK09828 putative fimbrial out 41.3 2.4E+02 0.0052 37.6 13.1 107 268-375 718-829 (865)
179 PRK15235 outer membrane fimbri 41.1 2.8E+02 0.0061 36.7 13.6 108 267-375 668-784 (814)
180 PF05751 FixH: FixH; InterPro 40.9 1.3E+02 0.0029 30.2 8.6 52 324-375 67-130 (146)
181 PRK12633 flgD flagellar basal 40.4 60 0.0013 35.9 6.3 45 146-190 126-181 (230)
182 PRK12812 flgD flagellar basal 39.9 1.8E+02 0.0038 32.9 9.9 44 146-189 138-192 (259)
183 PF13754 Big_3_4: Bacterial Ig 39.3 84 0.0018 26.4 5.6 28 435-462 5-35 (54)
184 PRK15298 fimbrial outer membra 39.2 2.6E+02 0.0056 37.2 12.9 108 267-375 706-820 (848)
185 COG1470 Predicted membrane pro 38.8 8.2E+02 0.018 30.0 30.8 79 542-630 224-307 (513)
186 PF03785 Peptidase_C25_C: Pept 38.8 1.4E+02 0.0029 27.6 7.0 47 147-196 24-75 (81)
187 PRK05842 flgD flagellar basal 38.8 60 0.0013 37.2 6.0 43 147-189 164-219 (295)
188 PRK15193 outer membrane usher 37.9 3.1E+02 0.0066 36.7 13.2 107 267-375 734-845 (876)
189 PF00041 fn3: Fibronectin type 37.1 2.8E+02 0.0061 24.1 9.7 44 508-555 32-76 (85)
190 PF13754 Big_3_4: Bacterial Ig 36.7 1.1E+02 0.0025 25.5 6.0 44 67-110 4-51 (54)
191 KOG1690 emp24/gp25L/p24 family 36.1 2.3E+02 0.0049 30.5 9.2 56 52-108 65-123 (215)
192 smart00557 IG_FLMN Filamin-typ 36.1 1.6E+02 0.0034 27.5 7.5 41 52-93 32-76 (93)
193 PRK12634 flgD flagellar basal 35.5 73 0.0016 35.1 5.9 43 51-93 121-174 (221)
194 PF09154 DUF1939: Domain of un 35.5 40 0.00087 28.8 3.1 35 149-186 21-55 (57)
195 PRK15316 RatA-like protein; Pr 35.3 70 0.0015 44.5 6.5 45 858-902 1595-1668(2683)
196 PRK09619 flgD flagellar basal 34.2 1.6E+02 0.0035 32.3 8.3 13 448-460 160-172 (218)
197 PF13115 YtkA: YtkA-like 33.9 1.1E+02 0.0024 27.9 6.0 43 333-375 28-85 (86)
198 KOG1690 emp24/gp25L/p24 family 33.6 1.1E+02 0.0024 32.8 6.5 35 162-196 80-116 (215)
199 PF04151 PPC: Bacterial pre-pe 32.9 1.1E+02 0.0023 26.8 5.6 38 876-913 25-68 (70)
200 PF14289 DUF4369: Domain of un 32.2 2.4E+02 0.0051 26.3 8.3 40 52-92 24-67 (106)
201 PF09294 Interfer-bind: Interf 32.2 1.2E+02 0.0026 28.6 6.2 82 920-1003 3-86 (106)
202 PF15415 DUF4622: Protein of u 31.8 1.7E+02 0.0036 32.2 7.6 92 897-998 1-105 (310)
203 PF06030 DUF916: Bacterial pro 31.7 2.4E+02 0.0052 28.0 8.3 53 890-944 51-104 (121)
204 PRK12633 flgD flagellar basal 31.6 80 0.0017 35.0 5.5 43 51-93 128-181 (230)
205 PF06488 L_lac_phage_MSP: Lact 31.1 5.2E+02 0.011 27.8 10.9 40 432-479 256-297 (301)
206 PF04234 CopC: CopC domain; I 31.0 1.1E+02 0.0023 29.0 5.6 31 173-205 62-96 (97)
207 PF13750 Big_3_3: Bacterial Ig 30.9 5.3E+02 0.012 26.8 11.1 29 980-1008 102-136 (158)
208 PF11008 DUF2846: Protein of u 30.9 1.1E+02 0.0023 30.0 5.8 44 894-940 55-102 (117)
209 PRK12812 flgD flagellar basal 30.2 1.1E+02 0.0024 34.5 6.4 43 51-93 140-193 (259)
210 PRK15255 fimbrial outer membra 30.0 5.4E+02 0.012 34.2 13.6 105 269-374 690-802 (829)
211 PF03785 Peptidase_C25_C: Pept 29.9 2.2E+02 0.0048 26.2 6.9 43 50-94 24-70 (81)
212 PF09912 DUF2141: Uncharacteri 29.9 95 0.0021 30.3 5.1 23 169-191 40-62 (112)
213 PF14289 DUF4369: Domain of un 29.3 3.6E+02 0.0078 25.1 9.0 49 404-455 12-64 (106)
214 PF04234 CopC: CopC domain; I 29.3 33 0.00072 32.4 1.8 50 47-96 28-85 (97)
215 KOG1879 UDP-glucose:glycoprote 29.2 1.8E+02 0.0039 39.4 8.6 110 72-189 987-1101(1470)
216 KOG3306 Predicted membrane pro 29.1 1.4E+02 0.003 31.2 6.2 49 56-107 13-61 (185)
217 PF13953 PapC_C: PapC C-termin 28.8 63 0.0014 28.4 3.4 47 951-1001 2-49 (68)
218 TIGR03000 plancto_dom_1 Planct 28.7 1.6E+02 0.0034 26.8 5.7 36 341-376 11-49 (75)
219 PRK05842 flgD flagellar basal 27.9 1.1E+02 0.0025 35.0 6.0 43 51-93 165-220 (295)
220 PF13473 Cupredoxin_1: Cupredo 27.7 1.9E+02 0.0041 27.4 6.8 31 913-945 25-55 (104)
221 PF13115 YtkA: YtkA-like 27.5 4.6E+02 0.01 23.7 9.9 44 145-188 32-85 (86)
222 PRK15198 outer membrane usher 27.3 5.3E+02 0.011 34.4 12.8 107 267-375 714-825 (860)
223 PF06488 L_lac_phage_MSP: Lact 27.2 1.3E+02 0.0028 32.2 5.7 42 155-196 247-291 (301)
224 PRK10301 hypothetical protein; 26.6 1.2E+02 0.0026 30.2 5.3 49 49-97 56-113 (124)
225 KOG1692 Putative cargo transpo 26.2 1.5E+02 0.0032 31.7 5.9 46 147-192 53-98 (201)
226 PF13753 SWM_repeat: Putative 25.6 1.1E+03 0.023 27.2 17.6 199 280-489 7-250 (317)
227 PF14054 DUF4249: Domain of un 25.5 3.2E+02 0.0069 30.9 9.4 47 959-1005 59-110 (298)
228 PRK12634 flgD flagellar basal 25.2 1.6E+02 0.0034 32.5 6.3 44 147-190 120-174 (221)
229 KOG1693 emp24/gp25L/p24 family 25.1 1E+02 0.0022 33.1 4.5 40 54-93 61-100 (209)
230 PF10577 UPF0560: Uncharacteri 24.6 1.1E+02 0.0023 39.4 5.4 48 786-843 15-63 (807)
231 smart00557 IG_FLMN Filamin-typ 24.4 4E+02 0.0086 24.7 8.1 43 417-459 31-76 (93)
232 PRK14081 triple tyrosine motif 24.2 1.6E+03 0.035 28.9 50.8 198 348-555 425-648 (667)
233 TIGR03000 plancto_dom_1 Planct 23.9 1.4E+02 0.003 27.1 4.5 54 976-1034 21-75 (75)
234 cd00063 FN3 Fibronectin type 3 23.4 2E+02 0.0044 24.6 5.8 25 981-1005 54-78 (93)
235 PRK15314 outer membrane protei 23.0 1E+02 0.0022 43.0 5.0 69 817-887 1836-1922(2435)
236 PRK13211 N-acetylglucosamine-b 22.9 4.5E+02 0.0097 32.5 10.1 47 326-377 341-387 (478)
237 PF14900 DUF4493: Domain of un 22.9 1E+03 0.022 26.1 16.1 34 445-479 59-94 (235)
238 PRK15315 outer membrane protei 22.7 1.7E+02 0.0037 40.2 6.8 25 861-887 1602-1626(1865)
239 PF06030 DUF916: Bacterial pro 22.6 7.5E+02 0.016 24.5 10.0 37 909-945 1-39 (121)
240 PF13473 Cupredoxin_1: Cupredo 22.3 1.3E+02 0.0029 28.5 4.6 57 856-918 40-97 (104)
241 PF10634 Iron_transport: Fe2+ 21.2 2.5E+02 0.0054 29.0 6.3 48 48-95 64-120 (151)
242 PRK15314 outer membrane protei 21.2 1.2E+02 0.0026 42.4 5.0 25 861-887 1611-1635(2435)
243 PF04151 PPC: Bacterial pre-pe 21.0 4.1E+02 0.009 23.1 7.1 19 1084-1102 52-70 (70)
244 PF09315 DUF1973: Domain of un 21.0 1E+03 0.022 25.3 12.2 55 53-110 42-100 (179)
245 COG4384 Mu-like prophage prote 20.2 1.3E+02 0.0028 31.9 4.1 38 959-996 63-101 (203)
No 1
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-218 Score=1866.35 Aligned_cols=1090 Identities=39% Similarity=0.672 Sum_probs=992.9
Q ss_pred ccchhhhhhhhhhhhcccCCceEEeecceeeeccccccccccCCCCCcccceEEEEEeCCCcEEEeEEecC-CcEEEeCC
Q 001065 3 SRDTLTYLLIIIYSIAAVSADSIHGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAP-NGYYFIPV 81 (1167)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~gcgGfv~~~~~~~~~~~~sd~~i~~sgv~v~L~~~~G~~~~~t~t~~-nG~y~~~~ 81 (1167)
+--|+..||++++..+.++.|+|+||||||| ||++||||.++|+|+|++|.+|++|+|+| |||||||+
T Consensus 4 i~~~~vvlLI~ls~~a~~sed~VvgCgGfVk-----------Sd~eidyS~ievkL~Tk~G~lKd~tdcaPsNGYfmIPv 72 (1165)
T KOG1948|consen 4 ICHMGVVLLILLSLLAPGSEDNVVGCGGFVK-----------SDSEIDYSQIEVKLLTKEGHLKDETDCAPSNGYFMIPV 72 (1165)
T ss_pred eeeehhhhhhhhhcccCCceeeEEeccceee-----------cCCccceeeEEEEEEeeccccccccccCCCCceEEEEE
Confidence 3447788888999999999999999999994 89999999999999999999999999999 99999999
Q ss_pred CCCccEEEEEEcCCCcccCCceEEEEEcC--CCcCCcceeeEEEeCcEEEEEEEeccCCccccCCCCCCcceEEEEEeCC
Q 001065 82 YDKGSFVIKVNGPEGWSWNPDKVAVTVDD--TGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS 159 (1167)
Q Consensus 82 l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~--~~~s~~~dinf~~~g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~ 159 (1167)
|++|+|.|++++|.||+|+|++++++||+ |.|+++.||||.|+||+|+|+|..+. +.+++||.|+|++..
T Consensus 73 YdKGdyiLkIspP~GwsfePd~Vel~vDGktd~Cs~n~DinFhftGFsv~GkVlgaa--------ggGpagV~velrs~e 144 (1165)
T KOG1948|consen 73 YDKGDYILKISPPAGWSFEPDSVELKVDGKTDACSLNEDINFHFTGFSVRGKVLGAA--------GGGPAGVLVELRSQE 144 (1165)
T ss_pred ecCCcEEEEecCCCCccccCceEEEEeccccccccCCCceEEEEeeeeEeeEEeecc--------CCCcccceeeccccc
Confidence 99999999999999999999999999996 79999999999999999999999873 479999999998775
Q ss_pred CcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeEeecceEEEEccCCeeEeeeeeccceEEeeEEEeCCCceeceEE
Q 001065 160 GDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHI 239 (1167)
Q Consensus 160 g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~V~v~~~~~~~~~~l~~~G~~isG~V~~~g~Pl~Ga~V 239 (1167)
+ .++++.|+++|.|.|.+++||+|.|.++||.|++..++++.|++...+..+++.|.+.||++.|+|+++++|+.|+.+
T Consensus 145 ~-~iast~T~~~Gky~f~~iiPG~Yev~ashp~w~~~~ag~tvvev~~a~~~va~~f~VsGydl~gsv~s~s~P~~gv~~ 223 (1165)
T KOG1948|consen 145 D-PIASTKTEDGGKYEFRNIIPGKYEVSASHPAWECISAGKTVVEVKNAPVVVAPNFKVSGYDLEGSVRSESMPFVGVVM 223 (1165)
T ss_pred C-cceeeEecCCCeEEEEecCCCceEEeccCcceeEeecCcEEEEeCCCccccCCceEEEeeeeEEEEeccCCcccceEE
Confidence 4 489999999999999999999999999999999986777888888777778899999999999999999999999999
Q ss_pred EEEECCCCcccCCCCCCC-cc----c-ccceeeEEEeCCCCeEEEcccCCccEEEEEEEecCCeEEEecCceEEEEEecc
Q 001065 240 YLYSDDVGKVDCPQGSGN-AL----G-ERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQ 313 (1167)
Q Consensus 240 ~L~~~~~~~~~c~~g~~~-~~----~-~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~ 313 (1167)
+|+..+.....|.+...+ +| . ....+|.+++|++|+|.|.++|+|.|.|.+.|.+++..|+++|..++++|+++
T Consensus 224 ~l~s~~v~~~dvpkc~gs~ap~n~~a~e~vslc~~vsd~~G~fsfksvPsGkY~l~a~y~ge~~~fdvSP~~l~v~Vehd 303 (1165)
T KOG1948|consen 224 TLYSTSVIDLDVPKCVGSEAPLNVPATENVSLCIGVSDPRGRFSFKSVPSGKYYLAASYVGEPKSFDVSPNPLKVVVEHD 303 (1165)
T ss_pred EEEEcccccccCCccccCCCCCCCCcccceeeEEEEEcCCceEEEEEcCCCCEEEEEEecCCceEEEeCCCceeEEEecc
Confidence 999987666665554333 21 1 22568999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeeEEeceEEEEEEEeC-CCCceeceEEEEcceeeeEeCCCceEEECc-CCCccEEEEEEeccccccceeeEEEc
Q 001065 314 HVTVPEKFQVTGFSVGGRVVDE-NDMGVEGVKILVDGHERSITDRDGYYKLDQ-VTSNRYTIEAVKVHYKFNKLKEYMVL 391 (1167)
Q Consensus 314 ~~~l~~~f~~~g~sV~G~V~d~-~G~pl~Ga~V~l~G~~~~~TD~dG~y~~~~-L~pG~Y~I~~~~~~y~~~~~~~v~v~ 391 (1167)
++++++.|+++||+++|||++. +|.|++||+|.+||+..+.||++|+|+++| +..|+|+|+++++||+|++.. +++.
T Consensus 304 ~lqi~~ef~vtgfSvtGRVl~g~~g~~l~gvvvlvngk~~~kTdaqGyykLen~~t~gtytI~a~kehlqFstv~-~kv~ 382 (1165)
T KOG1948|consen 304 HLQIASEFRVTGFSVTGRVLVGSKGLPLSGVVVLVNGKSGGKTDAQGYYKLENLKTDGTYTITAKKEHLQFSTVH-AKVK 382 (1165)
T ss_pred ceeccceeEEEEEEeeeeEEeCCCCCCccceEEEEcCcccceEcccceEEeeeeeccCcEEEEEeccceeeeeEE-EEec
Confidence 9999999999999999999987 899999999999999999999999999999 789999999999999999995 9999
Q ss_pred CCcceeceEEEEeeEEEEEEEEcCCcccEEEEEEcCCCcccceeeeecCC-eEEEEEEcCeeEEEEEEeecCCCCCCeee
Q 001065 392 PNMASIADIKAISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNN-GNFCFEVPPGEYRLSAMAATPESSSGILF 470 (1167)
Q Consensus 392 p~~~~i~dI~~~~~~V~G~V~~~~~~~~a~VtL~~~~~~~~~~~~~Td~~-G~f~f~L~pG~Y~v~~~~~~~~~~~G~~~ 470 (1167)
|++++++||++..|+|||+|+... .++.+.|+....+.+....+|++. |+|||.++||.|+|+++.++++.++|++|
T Consensus 383 pntasLpdI~a~~fdiCGqV~~~~--k~~nv~lt~~~s~~k~s~~~t~etdGsfCf~vppG~ytievl~~ta~~aagl~l 460 (1165)
T KOG1948|consen 383 PNTASLPDITAQKFDICGQVEKSE--KGVNVKLTFTRSDDKRSLEITPETDGSFCFPVPPGLYTIEVLDKTASGAAGLLL 460 (1165)
T ss_pred CCccccccccccceeeeeEEEEcc--ccceeEEEEccCccccccccccccCCceeEEcCCccEEEEEeccCcccccccEe
Confidence 999999999999999999998655 445555553322222334444544 99999999999999999999999999999
Q ss_pred eCceEEEEE-cCcccceEEEEeeeEEEEEEeeccCCCCceEEEEEEcCcccccCCcceeEEEecCCCcEEEcccCCccEE
Q 001065 471 LPPYADVVV-KSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYR 549 (1167)
Q Consensus 471 ~p~~~~V~V-~~p~~~I~f~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~ 549 (1167)
.|..++++| +.|+++|.|+|++++++|.|+|++.|+ .+.|+|+....+ ....++++.+|..+.|+|+|++||+|+
T Consensus 461 ~P~~~~veV~~~pv~ni~Fsqfranv~g~lsCl~tCg-~a~vtlq~la~G---q~~~~~vk~td~~~~ftF~nilPGkY~ 536 (1165)
T KOG1948|consen 461 TPRLLEVEVLKNPVTNIRFSQFRANVNGHLSCLGTCG-TATVTLQLLAAG---QTLVRSVKGTDESSVFTFENILPGKYS 536 (1165)
T ss_pred eeeeeeEEeecCcccceehhhhhhccceEEEeccCCC-ceeEEEEecccC---CcceeeEEEEeeccEEEeeccCCcceE
Confidence 999999999 689999999999999999999999999 799999877322 124566778999999999999999999
Q ss_pred EEEEeecccccccCCCceEEeeeEEEEEecCCccceeEEEeeeEEEEEecccEEEEEEecCCCeee---EEEccceeeEE
Q 001065 550 LEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVP---LKVKKGSQHIC 626 (1167)
Q Consensus 550 v~~~~~~~~~~~~~~~~cw~~~~~~v~V~~~~~~~~~F~q~Gy~~~i~~sh~~~~~~~~~~~~~~~---~~l~kG~~~~c 626 (1167)
++++ |+++|||++++++++|.+++.++++|+|+|||++|++||+++++|+|++|+..+ +++.||.|+||
T Consensus 537 ~~i~--------d~~~wCwe~ss~~lnV~~~d~~aieFvqkGy~~~iisSH~a~~e~~h~dg~~en~~~lki~kgvn~iC 608 (1165)
T KOG1948|consen 537 ARID--------DNGRWCWEKSSMTLNVEQSDTQAIEFVQKGYAAQIISSHPAEIEWSHADGKQENGKTLKIGKGVNSIC 608 (1165)
T ss_pred EEec--------cCCCceeecceEEEEeecccccccceeeccEEEEEEecCceeeEEecCCCCCCCcceEEecCcceEEE
Confidence 9998 488999999999999999999999999999999999999999999999987655 99999999999
Q ss_pred ecCCceEEEEeeccceEeCCCcEEEeCCCCceeEEEeEeeEEEEEEEEeecCCCccccCCccEEEEEecCCCceeecccc
Q 001065 627 VESPGVHNLHFVNPCVFFGSPVLKMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTA 706 (1167)
Q Consensus 627 ~~~~G~y~~~~~~sc~~f~~~~~~~~t~~~~~i~l~~~~~~~~G~i~~~~~~~~~~~~~~~~~~v~~~~~~g~~i~~~~~ 706 (1167)
+++||.|.+.+ .+||.|+.+++++++..+.+.+++++..+++|.|.++..+... ...++++++++++..+.+|+.
T Consensus 609 v~kpGs~~~~~-~sc~tfd~sspki~v~~~~~hh~ka~i~~~k~~i~ve~~kt~~-~s~~~k~v~e~~~~k~evit~--- 683 (1165)
T KOG1948|consen 609 VPKPGSYDVSL-GSCYTFDRSSPKITVPFDGVHHEKAVIARIKGTIDVENDKTAA-VSIREKFVVEIQDIKSEVITR--- 683 (1165)
T ss_pred ccCCccceeec-cceeecccCCceeecCCCcchHhHhhhhhhccceeeeeccccc-ccchhhhhhhhhhhcccccCc---
Confidence 99999999987 9999999999999999999999999999999999887755321 255678899999999888843
Q ss_pred cccCCCCCCCCceeEEEEEecCCCCeEEEEecCCCCCCcceeeeeceeEEEEEeCCCcccccceeeeeeceEEeccccCC
Q 001065 707 TLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPP 786 (1167)
Q Consensus 707 ~~~~~~~~~~~~~~y~~~~~a~~g~~~~v~P~s~~~~~~~~llf~p~~~~v~v~~~~c~~~~~~f~~~~G~~i~G~v~p~ 786 (1167)
.++..+-| ++++.|+|.+||++||+++|+|++ |.|||||+++++.|+++ |+..+++|.+++|+||+|+|+|+
T Consensus 684 ~a~~~avD-~G~f~yey~twas~gekl~ivPss------k~lLFyP~s~eavvS~d-C~~~a~~f~g~rGLfL~Gsi~Pa 755 (1165)
T KOG1948|consen 684 EAQVPAVD-NGRFTYEYPTWASSGEKLVIVPSS------KLLLFYPTSKEAVVSGD-CIENAVKFNGFRGLFLDGSIKPA 755 (1165)
T ss_pred cccccccc-CCcceEechhhcCCCceEEEeecc------ceeeecCCceEEEEecc-cchhheeecceeeEEEcceeccC
Confidence 33332222 278999999999999999999998 89999999999999876 99999999999999999999999
Q ss_pred CCCeEEEEEeccchhhhhcccCceeEEEEeCCCceEEeCCCCCCceEEEEEcCCCeEEeeeC--CceeEEEeeeEEEEEE
Q 001065 787 LSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVG--PNSFSCQKLSQISVRI 864 (1167)
Q Consensus 787 l~gv~i~i~~~~~~~~~~~~~g~~~~~~~Td~~G~f~~~~L~~~~~y~i~a~k~gy~~~~~~--~~~f~~~~l~~i~~~v 864 (1167)
|+||+|+|+.++++ ++.+++.|+++|.|++|||+.+..|.++|+||||+|++.+ +++|++++|++|++++
T Consensus 756 lega~Ikis~kkds--------~~~Iev~T~~~Gafk~GPl~~dl~yd~tA~kegyvft~~~~t~~sfqa~kl~~vsv~v 827 (1165)
T KOG1948|consen 756 LEGAVIKISLKKDS--------DVVIEVITNKDGAFKIGPLKRDLDYDITATKEGYVFTPTSPTPGSFQAVKLSQVSVKV 827 (1165)
T ss_pred CCCcEEEEEecCCC--------ceeEEEEEcCCCcEEecccccccccceeeccCceEEecCCCCccceeeeeeeEEEEEE
Confidence 99999999999886 7899999999999999999999999999999999999997 4899999999999999
Q ss_pred EccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCceeEEecCCcEEEEEEEEEee
Q 001065 865 YSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRV 944 (1167)
Q Consensus 865 ~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~ 944 (1167)
+|++ ++||+||||||||+++||+|++|+++|.++|++|+||+||||||||||+|+|+++||+|+|||+.+++|+|+|+
T Consensus 828 kdea--~q~LpgvLLSLsGg~~yRsNlvtgdng~~nf~sLsPgqyylRpmlKEykFePst~mIevkeGq~~~vvl~gkRv 905 (1165)
T KOG1948|consen 828 KDEA--TQPLPGVLLSLSGGKDYRSNLVTGDNGHKNFVSLSPGQYYLRPMLKEYKFEPSTSMIEVKEGQHENVVLKGKRV 905 (1165)
T ss_pred eccC--CCcCCcEEEEEecCcchhhccccCCCceeEEeecCcchhhhhhHHHhcCcCCCceeEEeccCceEEEEEEEEEE
Confidence 9996 69999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEcCCCCccCccEEEEEeCC-CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEE
Q 001065 945 AYSATGTITLLSGQPKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVK 1023 (1167)
Q Consensus 945 ~~s~~G~V~~~~g~p~~gv~v~~~~~~-~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~ 1023 (1167)
||||||+|.+|||+|++||.+||++++ ..++||+|||+||+||||||+|||.|.|++++.. ++++|||++|++++|+
T Consensus 906 AySayGtvssLsGdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~--~n~~iers~P~s~tv~ 983 (1165)
T KOG1948|consen 906 AYSAYGTVSSLSGDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYA--DNSPIERSFPRSFTVS 983 (1165)
T ss_pred EEEeeeehhhccCCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeecc--CCCcccccCCceEEEE
Confidence 999999999999999999999999998 7899999999999999999999999999999875 4899999999999999
Q ss_pred ecCcccccceEEEEecCCeEEEEEEEEecccccccceeEEEEEecCCC-CceEEEEeeCCceeEEeccCCCC--cEEEEE
Q 001065 1024 VGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDT-SKVESVISLPMSNFFQVKDLPKG--KHLLQL 1100 (1167)
Q Consensus 1024 v~~~d~~~~~f~~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~-~~v~~~~~~~~~~~f~~~~l~~~--~y~v~l 1100 (1167)
|+++||+|+||++|++++++||+|+|.++. .|++++++|.+|+..+. ++|++ +..++ .+++||+||++ +|+|+|
T Consensus 984 vgneDv~glnf~af~q~kttdit~~V~~~~-ne~l~sl~vv~yKs~nddspv~s-v~~gq-l~~ffp~l~~dg~~yvV~l 1060 (1165)
T KOG1948|consen 984 VGNEDVKGLNFMAFIQAKTTDITVEVGMDT-NEELQSLRVVIYKSNNDDSPVAS-VVAGQ-LLHFFPNLPRDGVEYVVRL 1060 (1165)
T ss_pred ecccccCCceEEEEeccceEEEEEEEcccc-cccccceEEEEEecCCCCCcceE-Eeccc-eeeeccccCCCCceEEEEE
Confidence 999999999999999999999999999986 47778999988888665 99999 55555 78888888886 799999
Q ss_pred EecCCCcceeeeeeeEEEEEEecc-eEEEEeeeeeeeeccccccCCCCCchhhhHHHhhhe
Q 001065 1101 RSSLPSSTHRFESEIIEVDLEKNA-QIHVGPLRYSVEENHHKQDLTPAPVFPLIVGVSVIG 1160 (1167)
Q Consensus 1101 ~s~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1160 (1167)
+|+||.++|+|+ ++ .|.|.. ++|+ .|.|.|+||..++|++|++++||.+.++|+.
T Consensus 1061 ~Stlp~~~y~yk--lp--~fva~~~~k~a-~l~f~p~rra~eaDi~q~s~~al~l~~lval 1116 (1165)
T KOG1948|consen 1061 ESTLPPQAYAYK--LP--RFVADQAMKVA-RLPFTPSRRANEADISQGSFLALPLFVLVAL 1116 (1165)
T ss_pred eccCCchheeee--cc--EEEeecceEEE-EEEeCccccccccccccCcEehhHHHHHHHH
Confidence 999999999994 55 788877 8899 8999999999999999999977776666554
No 2
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-51 Score=477.37 Aligned_cols=906 Identities=19% Similarity=0.250 Sum_probs=594.3
Q ss_pred CCCcccceEEEEEeCCCcEEEeEEecCCcEEEeCCCCCccEEEEEEcCCCcccCCceEEEEEcCCCcCCcceeeEEEeCc
Q 001065 47 ARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRFTGF 126 (1167)
Q Consensus 47 ~~i~~sgv~v~L~~~~G~~~~~t~t~~nG~y~~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~~~~s~~~dinf~~~g~ 126 (1167)
+.-..+||.|+|...++. +.+|.|+++|.|.|....||+|.|++++|. |.+.....++.+-... +...+-+|.+.||
T Consensus 129 aggGpagV~velrs~e~~-iast~T~~~Gky~f~~iiPG~Yev~ashp~-w~~~~ag~tvvev~~a-~~~va~~f~VsGy 205 (1165)
T KOG1948|consen 129 AGGGPAGVLVELRSQEDP-IASTKTEDGGKYEFRNIIPGKYEVSASHPA-WECISAGKTVVEVKNA-PVVVAPNFKVSGY 205 (1165)
T ss_pred cCCCcccceeecccccCc-ceeeEecCCCeEEEEecCCCceEEeccCcc-eeEeecCcEEEEeCCC-ccccCCceEEEee
Confidence 345678999999987776 488999999999977668999999999999 9988665554433321 3445678999999
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCC----------C------------cEEEEEEeCCCceEEEccccCceE
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS----------G------------DLISSVITSSEGSYLFKNIIPGKY 184 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~----------g------------~~i~~ttTd~~G~f~f~~l~pG~Y 184 (1167)
.+.|+|+.. +.|+.|+.+.|+..+ | ...+-+++|++|+|+|..||.|+|
T Consensus 206 dl~gsv~s~---------s~P~~gv~~~l~s~~v~~~dvpkc~gs~ap~n~~a~e~vslc~~vsd~~G~fsfksvPsGkY 276 (1165)
T KOG1948|consen 206 DLEGSVRSE---------SMPFVGVVMTLYSTSVIDLDVPKCVGSEAPLNVPATENVSLCIGVSDPRGRFSFKSVPSGKY 276 (1165)
T ss_pred eeEEEEecc---------CCcccceEEEEEEcccccccCCccccCCCCCCCCcccceeeEEEEEcCCceEEEEEcCCCCE
Confidence 999999985 479999999998642 1 235779999999999999999999
Q ss_pred EEEEEcCCce--eEeecc-eEEEEccCCeeEeeeeeccceEEeeEEEe--CCCceeceEEEEEECCCCcccCCCCCCCcc
Q 001065 185 KLRASHPNLS--VEVRGS-TEVELGFENGEVDDIFFAPGYEIRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNAL 259 (1167)
Q Consensus 185 ~l~~~~~g~~--~~~~~~-~~V~v~~~~~~~~~~l~~~G~~isG~V~~--~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~ 259 (1167)
.|.+.+-|.. +++.|. .+|+|..+..++...+.+.|++++|||+. .|.|++||.|.+..+
T Consensus 277 ~l~a~y~ge~~~fdvSP~~l~v~Vehd~lqi~~ef~vtgfSvtGRVl~g~~g~~l~gvvvlvngk--------------- 341 (1165)
T KOG1948|consen 277 YLAASYVGEPKSFDVSPNPLKVVVEHDHLQIASEFRVTGFSVTGRVLVGSKGLPLSGVVVLVNGK--------------- 341 (1165)
T ss_pred EEEEEecCCceEEEeCCCceeEEEeccceeccceeEEEEEEeeeeEEeCCCCCCccceEEEEcCc---------------
Confidence 9999887654 334444 88999999999999999999999999995 589999999988665
Q ss_pred cccceeeEEEeCCCCeEEEcc-cCCccEEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEEeceEEEEEEEeCCCC
Q 001065 260 GERKALCHAVSDADGKFMFKS-VPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVDENDM 338 (1167)
Q Consensus 260 ~~g~~~~~~~TD~~G~f~f~~-LppG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V~d~~G~ 338 (1167)
....||++|.|+++| +..|+|+|.+ .+++++|+ ++.+.+..+...+++ +.+.+|.|+|+|.-..
T Consensus 342 ------~~~kTdaqGyykLen~~t~gtytI~a--~kehlqFs----tv~~kv~pntasLpd-I~a~~fdiCGqV~~~~-- 406 (1165)
T KOG1948|consen 342 ------SGGKTDAQGYYKLENLKTDGTYTITA--KKEHLQFS----TVHAKVKPNTASLPD-ITAQKFDICGQVEKSE-- 406 (1165)
T ss_pred ------ccceEcccceEEeeeeeccCcEEEEE--eccceeee----eEEEEecCCcccccc-ccccceeeeeEEEEcc--
Confidence 467999999999999 8899999999 67887776 344666667677764 7788999999996542
Q ss_pred ceeceEEEE-----cceee-eEeCCC-ceEEECcCCCccEEEEEEecc------ccccceeeEEEcCCcceeceEEEEee
Q 001065 339 GVEGVKILV-----DGHER-SITDRD-GYYKLDQVTSNRYTIEAVKVH------YKFNKLKEYMVLPNMASIADIKAISY 405 (1167)
Q Consensus 339 pl~Ga~V~l-----~G~~~-~~TD~d-G~y~~~~L~pG~Y~I~~~~~~------y~~~~~~~v~v~p~~~~i~dI~~~~~ 405 (1167)
.++.+.+ +-+.. ..|++. |.|+| .++||.|+|++.... .+|.+. .+.+.-....+.+|.|.++
T Consensus 407 --k~~nv~lt~~~s~~k~s~~~t~etdGsfCf-~vppG~ytievl~~ta~~aagl~l~P~-~~~veV~~~pv~ni~Fsqf 482 (1165)
T KOG1948|consen 407 --KGVNVKLTFTRSDDKRSLEITPETDGSFCF-PVPPGLYTIEVLDKTASGAAGLLLTPR-LLEVEVLKNPVTNIRFSQF 482 (1165)
T ss_pred --ccceeEEEEccCccccccccccccCCceeE-EcCCccEEEEEeccCcccccccEeeee-eeeEEeecCcccceehhhh
Confidence 3344444 33332 244444 99999 999999999986543 333333 1222222334678999887
Q ss_pred --EEEEEEEEcCCcccEEEEEEc-CCCccc-ceeeeecCCeEEEEE-EcCeeEEEEEEeecCCCCCCeeeeCceEEEEE-
Q 001065 406 --DICGVVRTVGSGNKVKVALTH-GPDKVK-PQVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVV- 479 (1167)
Q Consensus 406 --~V~G~V~~~~~~~~a~VtL~~-~~~~~~-~~~~~Td~~G~f~f~-L~pG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V- 479 (1167)
++.|.+.|.+.|+.+.|+|.. ..++.. ....-||+.+.|.|+ +.||.|+++... ...|||...+++++|
T Consensus 483 ranv~g~lsCl~tCg~a~vtlq~la~Gq~~~~~vk~td~~~~ftF~nilPGkY~~~i~d-----~~~wCwe~ss~~lnV~ 557 (1165)
T KOG1948|consen 483 RANVNGHLSCLGTCGTATVTLQLLAAGQTLVRSVKGTDESSVFTFENILPGKYSARIDD-----NGRWCWEKSSMTLNVE 557 (1165)
T ss_pred hhccceEEEeccCCCceeEEEEecccCCcceeeEEEEeeccEEEeeccCCcceEEEecc-----CCCceeecceEEEEee
Confidence 899999999999999999963 223222 356679999999999 999999999984 267999999999999
Q ss_pred cCcccceEEEEeeeEEEEEEeeccCCCCceEEEEEEcCcccccCCcceeEEEecCCCcEEEcccCCccEEEEEEeecccc
Q 001065 480 KSPLLNIEFSQALVNVLGNVACKERCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREA 559 (1167)
Q Consensus 480 ~~p~~~I~f~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~ 559 (1167)
.+....|.|.|.+..++ |..+|.+.+......+ ....+++.++..+-.+||++. ||.|-+...+|
T Consensus 558 ~~d~~aieFvqkGy~~~--------iisSH~a~~e~~h~dg-~~en~~~lki~kgvn~iCv~k--pGs~~~~~~sc---- 622 (1165)
T KOG1948|consen 558 QSDTQAIEFVQKGYAAQ--------IISSHPAEIEWSHADG-KQENGKTLKIGKGVNSICVPK--PGSYDVSLGSC---- 622 (1165)
T ss_pred cccccccceeeccEEEE--------EEecCceeeEEecCCC-CCCCcceEEecCcceEEEccC--Cccceeeccce----
Confidence 57778999999999887 4457777777655321 023455677778889999998 99999888655
Q ss_pred cccCCCceEEeeeEEEEEecCCc---cceeEEEeeeEEE-EEecccEEEE------EEecCCCeee-----EEEccceee
Q 001065 560 SSMEDNWCWEQSFIGVDVGTNDV---KGVEFVQKGYWLN-VISTHDVDAY------MTQQDGSHVP-----LKVKKGSQH 624 (1167)
Q Consensus 560 ~~~~~~~cw~~~~~~v~V~~~~~---~~~~F~q~Gy~~~-i~~sh~~~~~------~~~~~~~~~~-----~~l~kG~~~ 624 (1167)
|.|+.+++.+.|..+.. ..+--.-+|-... ..++.+.... +.+-.++.++ ..+-.|...
T Consensus 623 ------~tfd~sspki~v~~~~~hh~ka~i~~~k~~i~ve~~kt~~~s~~~k~v~e~~~~k~evit~~a~~~avD~G~f~ 696 (1165)
T KOG1948|consen 623 ------YTFDRSSPKITVPFDGVHHEKAVIARIKGTIDVENDKTAAVSIREKFVVEIQDIKSEVITREAQVPAVDNGRFT 696 (1165)
T ss_pred ------eecccCCceeecCCCcchHhHhhhhhhccceeeeecccccccchhhhhhhhhhhcccccCcccccccccCCcce
Confidence 67788899998875442 1112222333221 1122222111 1111111111 222223333
Q ss_pred EE---ecCCce-EEEEeeccceEeCCCcEEEeCCCCce---eEEEeEeeE-EEEEEEEeecCCCccccCCccEEEEEecC
Q 001065 625 IC---VESPGV-HNLHFVNPCVFFGSPVLKMDTSNPSP---IYLKGEKYQ-LRGHINVQSRSPIGVHELPENIIVDILNG 696 (1167)
Q Consensus 625 ~c---~~~~G~-y~~~~~~sc~~f~~~~~~~~t~~~~~---i~l~~~~~~-~~G~i~~~~~~~~~~~~~~~~~~v~~~~~ 696 (1167)
+- ..++|. -.|+++.--..|.+.+.....+..|+ +.+++.+++ +.|+|. |. .+++.+++..+
T Consensus 697 yey~twas~gekl~ivPssk~lLFyP~s~eavvS~dC~~~a~~f~g~rGLfL~Gsi~------Pa----lega~Ikis~k 766 (1165)
T KOG1948|consen 697 YEYPTWASSGEKLVIVPSSKLLLFYPTSKEAVVSGDCIENAVKFNGFRGLFLDGSIK------PA----LEGAVIKISLK 766 (1165)
T ss_pred EechhhcCCCceEEEeeccceeeecCCceEEEEecccchhheeecceeeEEEcceec------cC----CCCcEEEEEec
Confidence 32 236664 77776433446888888888888776 677788777 677773 21 23444444322
Q ss_pred CC--ceeecccccccCCCCCCCCceeEEEEEecCCCCeEEEEecCCCCCCcceeeeeceeEEEEEeCCCcccccceeeee
Q 001065 697 DG--SISNRTTATLTSPANDQTSYAVYGFSLWANLGDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGR 774 (1167)
Q Consensus 697 ~g--~~i~~~~~~~~~~~~~~~~~~~y~~~~~a~~g~~~~v~P~s~~~~~~~~llf~p~~~~v~v~~~~c~~~~~~f~~~ 774 (1167)
+. .+|+-++ +..|.|.+=. ......+.++..- .-+.|.|.+... .+||..-. +.
T Consensus 767 kds~~~Iev~T----------~~~Gafk~GP-l~~dl~yd~tA~k------egyvft~~~~t~----~sfqa~kl---~~ 822 (1165)
T KOG1948|consen 767 KDSDVVIEVIT----------NKDGAFKIGP-LKRDLDYDITATK------EGYVFTPTSPTP----GSFQAVKL---SQ 822 (1165)
T ss_pred CCCceeEEEEE----------cCCCcEEecc-cccccccceeecc------CceEEecCCCCc----cceeeeee---eE
Confidence 22 2221000 1223333310 0111123333321 223333321110 12332110 00
Q ss_pred eceEEeccccCCCCCeEEEEEeccchhhhhcccCceeEEEEeCCCceEEeCCCCCCceEEEEEcCCCeEEeeeCC-----
Q 001065 775 LGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQVGP----- 849 (1167)
Q Consensus 775 ~G~~i~G~v~p~l~gv~i~i~~~~~~~~~~~~~g~~~~~~~Td~~G~f~~~~L~~~~~y~i~a~k~gy~~~~~~~----- 849 (1167)
.-..+......||.||...++... +.+-+.+|+++|.+.|..|.|+ +|.+++.+..|.|+|...
T Consensus 823 vsv~vkdea~q~LpgvLLSLsGg~----------~yRsNlvtgdng~~nf~sLsPg-qyylRpmlKEykFePst~mIevk 891 (1165)
T KOG1948|consen 823 VSVKVKDEATQPLPGVLLSLSGGK----------DYRSNLVTGDNGHKNFVSLSPG-QYYLRPMLKEYKFEPSTSMIEVK 891 (1165)
T ss_pred EEEEEeccCCCcCCcEEEEEecCc----------chhhccccCCCceeEEeecCcc-hhhhhhHHHhcCcCCCceeEEec
Confidence 011233344578999998876321 5778999999999999999996 999999999999998631
Q ss_pred ------ceeEEEee-eEEEEEEEccCCCCCcccceEEEEECC--cceeeceeecCCceEEEecCCCcceEEeeccCc---
Q 001065 850 ------NSFSCQKL-SQISVRIYSKDDAGEPIPSVLLSLSGD--DGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKE--- 917 (1167)
Q Consensus 850 ------~~f~~~~l-~~i~~~v~~~~~~~~pl~gvllslsg~--~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~ke--- 917 (1167)
..|...+. -++-.+|.. -+|+|..||-+.-.+. +.|-.-.+||+||++++.+|-||+-|..-+.++
T Consensus 892 eGq~~~vvl~gkRvAySayGtvss--LsGdp~~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~~n 969 (1165)
T KOG1948|consen 892 EGQHENVVLKGKRVAYSAYGTVSS--LSGDPMKGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYADN 969 (1165)
T ss_pred cCceEEEEEEEEEEEEEeeeehhh--ccCCcccCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeeccCC
Confidence 23433222 223345544 4499999999985554 457777899999999999999998775433222
Q ss_pred ---cccCCCceeEEecCCcEEEEEEEEEeee--EEEEEEEEcCCCCccCccEEEEEeCCCCeeeEEeecCcceEEEcCCC
Q 001065 918 ---YAFSPPAQAIELGSGESREVIFQATRVA--YSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLH 992 (1167)
Q Consensus 918 ---y~~~p~~~~i~v~~G~~~~v~~~~~r~~--~s~~G~V~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~ 992 (1167)
-+--|.+.+++|..-.-..+.|.+.+-+ +.+.+.|. +|.|= .|+
T Consensus 970 ~~iers~P~s~tv~vgneDv~glnf~af~q~kttdit~~V~--------------------------~~~ne-----~l~ 1018 (1165)
T KOG1948|consen 970 SPIERSFPRSFTVSVGNEDVKGLNFMAFIQAKTTDITVEVG--------------------------MDTNE-----ELQ 1018 (1165)
T ss_pred CcccccCCceEEEEecccccCCceEEEEeccceEEEEEEEc--------------------------ccccc-----ccc
Confidence 1233666667776666666666666554 22333332 11111 111
Q ss_pred CCCEEEEEEEeccCCCCcceeecCCceEEEEecCcccccceEEEEecCCeEEEEEEEEecccccccceeEEEEEecCCCC
Q 001065 993 PDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTS 1072 (1167)
Q Consensus 993 pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~~~~~f~~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~ 1072 (1167)
....+..|.. +++. .-.+|.++. -+.-|.++. .-.-.-.|+|
T Consensus 1019 --sl~vv~yKs~----ndds-----pv~sv~~gq------l~~ffp~l~--------------~dg~~yvV~l------- 1060 (1165)
T KOG1948|consen 1019 --SLRVVIYKSN----NDDS-----PVASVVAGQ------LLHFFPNLP--------------RDGVEYVVRL------- 1060 (1165)
T ss_pred --ceEEEEEecC----CCCC-----cceEEeccc------eeeeccccC--------------CCCceEEEEE-------
Confidence 0112222221 1110 112222222 001110000 0000111221
Q ss_pred ceEEEEeeCCceeEEeccCCCCcEEEEEEecCCCcceeeeeeeEEEEEEecceEEEEeeeeeeeeccccccCCCCCchhh
Q 001065 1073 KVESVISLPMSNFFQVKDLPKGKHLLQLRSSLPSSTHRFESEIIEVDLEKNAQIHVGPLRYSVEENHHKQDLTPAPVFPL 1152 (1167)
Q Consensus 1073 ~v~~~~~~~~~~~f~~~~l~~~~y~v~l~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1152 (1167)
++ .||+-.|..++- +| +++.+.++.+.|++|+++.+|.+++.++..+.++|+|
T Consensus 1061 --~S-------------tlp~~~y~yklp--------~f----va~~~~k~a~l~f~p~rra~eaDi~q~s~~al~l~~l 1113 (1165)
T KOG1948|consen 1061 --ES-------------TLPPQAYAYKLP--------RF----VADQAMKVARLPFTPSRRANEADISQGSFLALPLFVL 1113 (1165)
T ss_pred --ec-------------cCCchheeeecc--------EE----EeecceEEEEEEeCccccccccccccCcEehhHHHHH
Confidence 11 477777877764 24 7888899999999999999999999999999999998
Q ss_pred hHH--Hh--hheeeccCCC
Q 001065 1153 IVG--VS--VIGLFISMPR 1167 (1167)
Q Consensus 1153 ~~~--~~--~~~~~~~~~~ 1167 (1167)
+++ +- .+++|+|+||
T Consensus 1114 valaffnqd~~~~lLsi~s 1132 (1165)
T KOG1948|consen 1114 VALAFFNQDRVLELLSIPS 1132 (1165)
T ss_pred HHHHHhchhhhhhhhcchh
Confidence 887 44 6788888875
No 3
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=4.7e-28 Score=293.53 Aligned_cols=403 Identities=15% Similarity=0.246 Sum_probs=293.8
Q ss_pred CCCCCcccceEEEEEeCCCcEEEeE-EecCCcEEEeCCCCCccEEE-EEEcCCCcccC-CceEEEEEcCCCcCCcceeeE
Q 001065 45 TDARLDYSHVTVELRTLDGLVKEST-QCAPNGYYFIPVYDKGSFVI-KVNGPEGWSWN-PDKVAVTVDDTGCNGNEDINF 121 (1167)
Q Consensus 45 sd~~i~~sgv~v~L~~~~G~~~~~t-~t~~nG~y~~~~l~~G~Y~l-~~~~P~G~~~~-p~~~~v~Vd~~~~s~~~dinf 121 (1167)
.+..-.++|+.++|++.+|....+. +|+.+|.+.+..|.-|+|.| +.++|.||... -...+++|+.. +..+-.
T Consensus 979 a~~~k~LeGA~F~Lyd~~Ge~~~reitT~~dGkl~~~nL~~~dY~LiETkAPtGY~l~~~dgkeiTI~~s----g~Ei~v 1054 (1531)
T COG4932 979 ADTGKKLEGAKFQLYDSEGEKLGREITTDEDGKLTFDNLQYGDYKLIETKAPTGYTLDYKDGKEITISAS----GKEIFV 1054 (1531)
T ss_pred ccccccccccEEEEEecCCceeeeeeeecccceeeecccccceeEEEEccCCcceeeccCcccEEEEecC----CceeEE
Confidence 4445569999999999998876654 77889999999999999999 88999999988 55566777652 222333
Q ss_pred EEeCcEEEEEEEe-ccCCccccCCCCCCcceEEEEEeCCCcEEEE-EEeCCCceEEEccccCceEEEEEEc--CCceeEe
Q 001065 122 RFTGFTLLGRVVG-AIGGESCLDKGGGPSNVNVELLSHSGDLISS-VITSSEGSYLFKNIIPGKYKLRASH--PNLSVEV 197 (1167)
Q Consensus 122 ~~~g~~IsG~V~~-~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~-ttTd~~G~f~f~~l~pG~Y~l~~~~--~g~~~~~ 197 (1167)
....-...|.|.. +. |.++++-|+||.++|.+.+|..+++ .+||++|.....+|.||+|++.+.+ .||.+..
T Consensus 1055 tkeN~~~~g~V~L~K~----D~at~~~LaGA~FeLQdk~G~~l~enL~TD~~G~v~itdLaPGDYqfVEtkAPtGY~Lda 1130 (1531)
T COG4932 1055 TKENEAKKGSVQLTKK----DSATGATLAGAEFELQDKDGNTLQENLTTDEDGKVEITDLAPGDYQFVETKAPTGYILDA 1130 (1531)
T ss_pred eecccccccceeEEEe----cccccccccCceEEEeeccCcchhhhccccccCcEEeccccCCceeeEEecCCceeEecC
Confidence 3334444555522 11 2347899999999999999977776 8999999999999999999998764 4898873
Q ss_pred ecceEEEEccCCeeEeeeeeccceEEee-----EEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeC
Q 001065 198 RGSTEVELGFENGEVDDIFFAPGYEIRG-----LVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSD 271 (1167)
Q Consensus 198 ~~~~~V~v~~~~~~~~~~l~~~G~~isG-----~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD 271 (1167)
. .+.|++...+.... .+........| +|++ .+.+|+||+|.|.+.+++. +....+||
T Consensus 1131 t-PV~FtI~eeq~e~~-~vtKeN~~~~GsvqLtK~Ds~t~a~LaGA~Fel~d~dG~~---------------VqegLtTD 1193 (1531)
T COG4932 1131 T-PVNFTISEEQDEAA-KVTKENTLKPGSVQLTKVDSATKATLAGAEFELQDEDGTL---------------VQEGLTTD 1193 (1531)
T ss_pred c-cceeEeeccCCcee-EEeecccccccceEEEEecccccccccCcEEEEEcCCCcE---------------eeccceec
Confidence 3 36777774433221 11122222333 4444 4899999999999987543 23458999
Q ss_pred CCCeEEEcccCCccEEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEEeceEEEEEEEe-----CCCCceeceEEE
Q 001065 272 ADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVVD-----ENDMGVEGVKIL 346 (1167)
Q Consensus 272 ~~G~f~f~~LppG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V~d-----~~G~pl~Ga~V~ 346 (1167)
++|+....+|.||+|++.++.++.++.++..|.. |++..++.... ......-.+.|.|+. ..+..++||.+.
T Consensus 1194 ~nG~i~VtdL~PGdYqFVETkAP~GY~LdatP~~--FtI~~~q~ev~-~V~~en~~~pgsv~L~k~d~~~~~~l~~a~fk 1270 (1531)
T COG4932 1194 ENGKINVTDLAPGDYQFVETKAPTGYILDATPTP--FTIEFNQEEVV-KVVKENTAIPGSVVLTKKDSDTGAALSGAEFK 1270 (1531)
T ss_pred CCCcEEecccCCcceeeeeecCCcceeeccccce--eEEecccccee-EEeeccccCCCCceeeccCCCcccccCCCcee
Confidence 9999999999999999999876666666666654 66655443221 122233345666653 357889999999
Q ss_pred E---cceee---eEeCCCceEEECcCCCccEEE-EEEe-cccccccee-eEEEcCCcceeceEEEEeeEEEEEEEEcC--
Q 001065 347 V---DGHER---SITDRDGYYKLDQVTSNRYTI-EAVK-VHYKFNKLK-EYMVLPNMASIADIKAISYDICGVVRTVG-- 415 (1167)
Q Consensus 347 l---~G~~~---~~TD~dG~y~~~~L~pG~Y~I-~~~~-~~y~~~~~~-~v~v~p~~~~i~dI~~~~~~V~G~V~~~~-- 415 (1167)
| +|..+ .+||+.|.....+|+||.|+. +..+ .||..+..+ .+.+.-++.....+...+..+.|.|....
T Consensus 1271 l~~~eg~~vqe~L~td~~Gei~v~dlkpGdyqfVETkAp~Gy~L~a~pv~ftI~~~q~e~~kV~~~n~~~~gsv~l~k~d 1350 (1531)
T COG4932 1271 LLDAEGTTVQEGLTTDETGEIVVADLKPGDYQFVETKAPEGYILDATPVNFTIEFNQEEAVKVTKENDAKTGSVVLTKLD 1350 (1531)
T ss_pred eecCCCcEeccCceecCCCcEEecccCCCcccceEccCCcceEEeecceeEEEEecccccEEEEEeeccccccEEEEEee
Confidence 9 55555 499999999999999999996 4444 467777653 23444444444556666667788877442
Q ss_pred -----CcccEEEEEEcCCCcccceeeeecCCeEEEEE-EcCeeEEEEEEeecCCCCCCeeeeCceEEEEE
Q 001065 416 -----SGNKVKVALTHGPDKVKPQVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVV 479 (1167)
Q Consensus 416 -----~~~~a~VtL~~~~~~~~~~~~~Td~~G~f~f~-L~pG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V 479 (1167)
...+|.+.|.+..++.......||++|+..+. |+||+|++.+++ ++.||.+....++++|
T Consensus 1351 ~~~~~~LegA~F~l~de~g~ilke~l~t~~nG~l~v~dLaPGdYqfvETk----APtgY~Ld~tpv~FTI 1416 (1531)
T COG4932 1351 SSSGVTLEGAEFELLDEEGNILKEGLVTDENGQLLVDDLAPGDYQFVETK----APTGYELDATPVDFTI 1416 (1531)
T ss_pred cccCccccCcEEEEEcccCceehhcceeCCCCcEEEeecCCCceeeEEcc----CCcceeccCCceEEEE
Confidence 23578888887777665677899999999999 999999999999 4789999888888887
No 4
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.1e-26 Score=281.82 Aligned_cols=408 Identities=15% Similarity=0.225 Sum_probs=306.5
Q ss_pred ccEEEEEEcCCCcccceeeeecCCeEEEEE-EcCeeEEEEEEeecCCCCCCeeee-CceEEEEEcCcccceEEEEeeeEE
Q 001065 418 NKVKVALTHGPDKVKPQVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFL-PPYADVVVKSPLLNIEFSQALVNV 495 (1167)
Q Consensus 418 ~~a~VtL~~~~~~~~~~~~~Td~~G~f~f~-L~pG~Y~v~~~~~~~~~~~G~~~~-p~~~~V~V~~p~~~I~f~q~~a~V 495 (1167)
.++.+.|.+..+....+...||++|...|. |.-|+|.+.+++ ++.||.+. ....+++|...-..|...-..+..
T Consensus 986 eGA~F~Lyd~~Ge~~~reitT~~dGkl~~~nL~~~dY~LiETk----APtGY~l~~~dgkeiTI~~sg~Ei~vtkeN~~~ 1061 (1531)
T COG4932 986 EGAKFQLYDSEGEKLGREITTDEDGKLTFDNLQYGDYKLIETK----APTGYTLDYKDGKEITISASGKEIFVTKENEAK 1061 (1531)
T ss_pred cccEEEEEecCCceeeeeeeecccceeeecccccceeEEEEcc----CCcceeeccCcccEEEEecCCceeEEeeccccc
Confidence 467777776666555678899999999999 999999999998 46898777 556677773211222222223333
Q ss_pred EEEEeecc------CCCCceEEEEEEcCcccccCCcceeEEEecCCCcEEEcccCCccEEEEEEeecccccccCCCceEE
Q 001065 496 LGNVACKE------RCGPLVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWE 569 (1167)
Q Consensus 496 ~G~V~~~~------~~~~~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~ 569 (1167)
.|.|.+.. +...|+.+.|+..+|. ..+....||++|...+.+|.||.|++.+.++ |.+|..+
T Consensus 1062 ~g~V~L~K~D~at~~~LaGA~FeLQdk~G~-----~l~enL~TD~~G~v~itdLaPGDYqfVEtkA-------PtGY~Ld 1129 (1531)
T COG4932 1062 KGSVQLTKKDSATGATLAGAEFELQDKDGN-----TLQENLTTDEDGKVEITDLAPGDYQFVETKA-------PTGYILD 1129 (1531)
T ss_pred ccceeEEEecccccccccCceEEEeeccCc-----chhhhccccccCcEEeccccCCceeeEEecC-------CceeEec
Confidence 55555432 1224899999988875 2333345899999999999999999999987 6666666
Q ss_pred eeeEEEEEecCCccceeEEEeeeEEEEEecccEEEEEEecCCCeeeEEEccceeeEEecCCceEEEEeeccceEeCCCcE
Q 001065 570 QSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKVKKGSQHICVESPGVHNLHFVNPCVFFGSPVL 649 (1167)
Q Consensus 570 ~~~~~v~V~~~~~~~~~F~q~Gy~~~i~~sh~~~~~~~~~~~~~~~~~l~kG~~~~c~~~~G~y~~~~~~sc~~f~~~~~ 649 (1167)
..++.++|..+
T Consensus 1130 atPV~FtI~ee--------------------------------------------------------------------- 1140 (1531)
T COG4932 1130 ATPVNFTISEE--------------------------------------------------------------------- 1140 (1531)
T ss_pred CccceeEeecc---------------------------------------------------------------------
Confidence 66655555411
Q ss_pred EEeCCCCceeEEEeEeeEEEEEEEEeecCCCccccCCccEEEEEecCCCceeecccccccCCCCCCCCceeEEEEEecCC
Q 001065 650 KMDTSNPSPIYLKGEKYQLRGHINVQSRSPIGVHELPENIIVDILNGDGSISNRTTATLTSPANDQTSYAVYGFSLWANL 729 (1167)
Q Consensus 650 ~~~t~~~~~i~l~~~~~~~~G~i~~~~~~~~~~~~~~~~~~v~~~~~~g~~i~~~~~~~~~~~~~~~~~~~y~~~~~a~~ 729 (1167)
+..++.++.++++..|++.|.+. + .
T Consensus 1141 -----q~e~~~vtKeN~~~~GsvqLtK~--D----------------------------------s-------------- 1165 (1531)
T COG4932 1141 -----QDEAAKVTKENTLKPGSVQLTKV--D----------------------------------S-------------- 1165 (1531)
T ss_pred -----CCceeEEeecccccccceEEEEe--c----------------------------------c--------------
Confidence 11223344444555566654431 0 0
Q ss_pred CCeEEEEecCCCCCCcceeeeeceeEEEEEeCCCcccccceeeeeeceEEeccccCCCCCeEEEEEeccchhhhhcccCc
Q 001065 730 GDQLTFVPRDPRGNEEKKILFYPRQRQVSVTNDGCQALIPAFSGRLGLYTEGSVSPPLSGVNIRIIAAEDSQIASLKKGH 809 (1167)
Q Consensus 730 g~~~~v~P~s~~~~~~~~llf~p~~~~v~v~~~~c~~~~~~f~~~~G~~i~G~v~p~l~gv~i~i~~~~~~~~~~~~~g~ 809 (1167)
. ..-+|+|++|++.+.++. .
T Consensus 1166 ---------------------------~-------------------------t~a~LaGA~Fel~d~dG~--------~ 1185 (1531)
T COG4932 1166 ---------------------------A-------------------------TKATLAGAEFELQDEDGT--------L 1185 (1531)
T ss_pred ---------------------------c-------------------------ccccccCcEEEEEcCCCc--------E
Confidence 0 013688999999987653 3
Q ss_pred eeEEEEeCCCceEEeCCCCC-CceEEEEEcCCCeEEeeeC-Cc--eeE-----------EEeeeEEEEEEEccCCCCCcc
Q 001065 810 LALETSTGADGSFIGGPLYD-DITYNVEASKPGYYLRQVG-PN--SFS-----------CQKLSQISVRIYSKDDAGEPI 874 (1167)
Q Consensus 810 ~~~~~~Td~~G~f~~~~L~~-~~~y~i~a~k~gy~~~~~~-~~--~f~-----------~~~l~~i~~~v~~~~~~~~pl 874 (1167)
+.-.+.||+||+..+-.|.| +++|.+++++.||.|+.++ ++ .|+ ..+-|++.+..+|. +++..|
T Consensus 1186 VqegLtTD~nG~i~VtdL~PGdYqFVETkAP~GY~LdatP~~FtI~~~q~ev~~V~~en~~~pgsv~L~k~d~-~~~~~l 1264 (1531)
T COG4932 1186 VQEGLTTDENGKINVTDLAPGDYQFVETKAPTGYILDATPTPFTIEFNQEEVVKVVKENTAIPGSVVLTKKDS-DTGAAL 1264 (1531)
T ss_pred eeccceecCCCcEEecccCCcceeeeeecCCcceeeccccceeEEeccccceeEEeeccccCCCCceeeccCC-Cccccc
Confidence 44669999999999999986 7999999999999999875 21 111 34558888888876 568999
Q ss_pred cceEEEEECCcc--eeeceeecCCceEEEecCCCcceEEeec--cCccccCCCceeEEecCCcEEEEEEEEEeeeEE---
Q 001065 875 PSVLLSLSGDDG--YRNNSVSWAGGSFHFDNLFPGNFYLRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYS--- 947 (1167)
Q Consensus 875 ~gvllslsg~~~--~r~n~~T~~~G~~~f~~L~PG~Y~~~~~--~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s--- 947 (1167)
++|.|+|..+++ .+-||+||++|.+.+.+|.||+|+|.+. .-+|-++-.|..+.|.-.|.+.+.++..+.++.
T Consensus 1265 ~~a~fkl~~~eg~~vqe~L~td~~Gei~v~dlkpGdyqfVETkAp~Gy~L~a~pv~ftI~~~q~e~~kV~~~n~~~~gsv 1344 (1531)
T COG4932 1265 SGAEFKLLDAEGTTVQEGLTTDETGEIVVADLKPGDYQFVETKAPEGYILDATPVNFTIEFNQEEAVKVTKENDAKTGSV 1344 (1531)
T ss_pred CCCceeeecCCCcEeccCceecCCCcEEecccCCCcccceEccCCcceEEeecceeEEEEecccccEEEEEeeccccccE
Confidence 999999998875 6779999999999999999999999876 458999999999999988998888888888753
Q ss_pred EEEEEEcCCCCccCccEEEEEeCC-CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecC
Q 001065 948 ATGTITLLSGQPKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGS 1026 (1167)
Q Consensus 948 ~~G~V~~~~g~p~~gv~v~~~~~~-~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~ 1026 (1167)
..-++++-.+..++|+.|+++++. +.++|..+||++|+..|.+|.||+|++|+.|++.+| .. .+.|-.++|+.+.
T Consensus 1345 ~l~k~d~~~~~~LegA~F~l~de~g~ilke~l~t~~nG~l~v~dLaPGdYqfvETkAPtgY---~L-d~tpv~FTIe~~q 1420 (1531)
T COG4932 1345 VLTKLDSSSGVTLEGAEFELLDEEGNILKEGLVTDENGQLLVDDLAPGDYQFVETKAPTGY---EL-DATPVDFTIEFNQ 1420 (1531)
T ss_pred EEEEeecccCccccCcEEEEEcccCceehhcceeCCCCcEEEeecCCCceeeEEccCCcce---ec-cCCceEEEEEcCc
Confidence 455566778999999999999875 668999999999999999999999999999998754 22 2457777777666
Q ss_pred cccc
Q 001065 1027 GDIK 1030 (1167)
Q Consensus 1027 ~d~~ 1030 (1167)
++.-
T Consensus 1421 ~e~~ 1424 (1531)
T COG4932 1421 EEAL 1424 (1531)
T ss_pred ccce
Confidence 6543
No 5
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.87 E-value=6.9e-09 Score=94.86 Aligned_cols=76 Identities=21% Similarity=0.386 Sum_probs=55.3
Q ss_pred EEEEEEEeCCCCceeceEEEEc---ceee--eEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCCcceeceEE
Q 001065 327 SVGGRVVDENDMGVEGVKILVD---GHER--SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIK 401 (1167)
Q Consensus 327 sV~G~V~d~~G~pl~Ga~V~l~---G~~~--~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~~i~dI~ 401 (1167)
+|+|+|.|++|+||+||.|.+. +... +.||++|+|.|.+|+||+|+|++.+++|.......+.+.++.....+|.
T Consensus 1 tI~G~V~d~~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~~i~ 80 (82)
T PF13620_consen 1 TISGTVTDATGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQENVTVTAGQTTTVDIT 80 (82)
T ss_dssp -EEEEEEETTSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEEEEEEESSSSEEE--EE
T ss_pred CEEEEEEcCCCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcceEEEEEEEEeCCCEEEEEEE
Confidence 5899999999999999999992 2222 6999999999999999999999999998766654577777654444554
Q ss_pred E
Q 001065 402 A 402 (1167)
Q Consensus 402 ~ 402 (1167)
+
T Consensus 81 L 81 (82)
T PF13620_consen 81 L 81 (82)
T ss_dssp E
T ss_pred E
Confidence 3
No 6
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.79 E-value=1.6e-08 Score=92.44 Aligned_cols=74 Identities=27% Similarity=0.471 Sum_probs=55.8
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeEeecceEEEEc
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 206 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~V~v~ 206 (1167)
+|+|+|.+. ++.|++||.|.|.+.++.....++||++|+|+|.+|+||+|.|.++++||..... ..+.+.
T Consensus 1 tI~G~V~d~--------~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~~~~--~~v~v~ 70 (82)
T PF13620_consen 1 TISGTVTDA--------TGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQPQTQ--ENVTVT 70 (82)
T ss_dssp -EEEEEEET--------TSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-EEE--EEEEES
T ss_pred CEEEEEEcC--------CCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcceEEE--EEEEEe
Confidence 589999986 3699999999999877777889999999999999999999999999999986521 257777
Q ss_pred cCCe
Q 001065 207 FENG 210 (1167)
Q Consensus 207 ~~~~ 210 (1167)
.+..
T Consensus 71 ~~~~ 74 (82)
T PF13620_consen 71 AGQT 74 (82)
T ss_dssp SSSE
T ss_pred CCCE
Confidence 6554
No 7
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=98.28 E-value=1.4e-06 Score=77.17 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=53.3
Q ss_pred ccceEEEEEeCCCcEEEe--EEecCCcEEEeCCCCCccEEE-EEEcCCCcccCCceEEEEEcCC
Q 001065 51 YSHVTVELRTLDGLVKES--TQCAPNGYYFIPVYDKGSFVI-KVNGPEGWSWNPDKVAVTVDDT 111 (1167)
Q Consensus 51 ~sgv~v~L~~~~G~~~~~--t~t~~nG~y~~~~l~~G~Y~l-~~~~P~G~~~~p~~~~v~Vd~~ 111 (1167)
|+||+|+|++.++..... ..|+.+|.|.|..|++|.|+| +..+|+||.+.+....+.+..+
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~~~~~~~~i~~~ 64 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLDDTPYEFTITED 64 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEEECEEEEEECTT
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEECCCceEEEEecC
Confidence 579999999999888776 788999999999999999999 6677999999988888887664
No 8
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.14 E-value=1e-05 Score=75.09 Aligned_cols=58 Identities=19% Similarity=0.530 Sum_probs=50.3
Q ss_pred EEEEEEEeCC-CCceeceEEEE-cceeeeEeCCCceEEECcCCCccEEEEEEeccccccce
Q 001065 327 SVGGRVVDEN-DMGVEGVKILV-DGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKL 385 (1167)
Q Consensus 327 sV~G~V~d~~-G~pl~Ga~V~l-~G~~~~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~ 385 (1167)
+|+|+|.|.. ++||++|.|.+ +....+.||++|+|.|. +++|.|+|.+++.+|.....
T Consensus 1 ti~G~V~d~~t~~pl~~a~V~~~~~~~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~~~~~ 60 (88)
T PF13715_consen 1 TISGKVVDSDTGEPLPGATVYLKNTKKGTVTDENGRFSIK-LPEGDYTLKISYIGYETKTI 60 (88)
T ss_pred CEEEEEEECCCCCCccCeEEEEeCCcceEEECCCeEEEEE-EcCCCeEEEEEEeCEEEEEE
Confidence 3789999996 99999999999 44455799999999997 99999999999999865543
No 9
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=98.13 E-value=1e-05 Score=71.71 Aligned_cols=61 Identities=25% Similarity=0.480 Sum_probs=48.8
Q ss_pred CcceEEEEEeCCCcEEEE--EEeCCCceEEEccccCceEEEEEEc--CCceeEeecceEEEEccCC
Q 001065 148 PSNVNVELLSHSGDLISS--VITSSEGSYLFKNIIPGKYKLRASH--PNLSVEVRGSTEVELGFEN 209 (1167)
Q Consensus 148 laGv~V~L~~~~g~~i~~--ttTd~~G~f~f~~l~pG~Y~l~~~~--~g~~~~~~~~~~V~v~~~~ 209 (1167)
|+||+|+|++.++..... .+||++|.|.|.+|+||+|+|++.. +||... .....+.+..++
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~~-~~~~~~~i~~~~ 65 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQLD-DTPYEFTITEDG 65 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEEEE-ECEEEEEECTTS
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCEEC-CCceEEEEecCC
Confidence 689999999998866665 9999999999999999999999865 578766 333566666544
No 10
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.04 E-value=3.8e-05 Score=71.17 Aligned_cols=58 Identities=24% Similarity=0.372 Sum_probs=50.7
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeE
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 196 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~ 196 (1167)
+|+|+|.+.. ++.|++||+|.+.+.+ ..+.||++|+|+|. +++|+|.|.+++.||...
T Consensus 1 ti~G~V~d~~-------t~~pl~~a~V~~~~~~----~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~~~ 58 (88)
T PF13715_consen 1 TISGKVVDSD-------TGEPLPGATVYLKNTK----KGTVTDENGRFSIK-LPEGDYTLKISYIGYETK 58 (88)
T ss_pred CEEEEEEECC-------CCCCccCeEEEEeCCc----ceEEECCCeEEEEE-EcCCCeEEEEEEeCEEEE
Confidence 4799999862 4799999999998643 56889999999999 999999999999999865
No 11
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.90 E-value=3.1e-05 Score=90.78 Aligned_cols=75 Identities=21% Similarity=0.189 Sum_probs=61.3
Q ss_pred eEEEEEEEeC-CCCceeceEEEEcceee-eEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCCcceeceEEE
Q 001065 326 FSVGGRVVDE-NDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKA 402 (1167)
Q Consensus 326 ~sV~G~V~d~-~G~pl~Ga~V~l~G~~~-~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~~i~dI~~ 402 (1167)
..|.|+|+|. +|+||+||+|.|.|... ++||.+|.|.+ .|+||+|+|++++.+|..... .+.+.++.....+|.+
T Consensus 297 ~gI~G~V~D~~~g~pl~~AtV~V~g~~~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~~~~~-~v~V~~~~~~~~~~~L 373 (375)
T cd03863 297 RGVRGFVLDATDGRGILNATISVADINHPVTTYKDGDYWR-LLVPGTYKVTASARGYDPVTK-TVEVDSKGAVQVNFTL 373 (375)
T ss_pred CeEEEEEEeCCCCCCCCCeEEEEecCcCceEECCCccEEE-ccCCeeEEEEEEEcCcccEEE-EEEEcCCCcEEEEEEe
Confidence 4699999997 79999999999976544 68999999999 799999999999999876665 5677766544445544
No 12
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=97.75 E-value=0.00012 Score=65.42 Aligned_cols=58 Identities=31% Similarity=0.509 Sum_probs=52.1
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcCCce
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLS 194 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~ 194 (1167)
-|+|+|+.. +.|++|+-|+|++.+|+...+..|++.|.|+|- ..||+++|++.+++-.
T Consensus 9 VItG~V~~~---------G~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFf-aapG~WtvRal~~~g~ 66 (85)
T PF07210_consen 9 VITGRVTRD---------GEPVGGAYVRLLDSSGEFTAEVVTSATGDFRFF-AAPGSWTVRALSRGGN 66 (85)
T ss_pred EEEEEEecC---------CcCCCCeEEEEEcCCCCeEEEEEecCCccEEEE-eCCCceEEEEEccCCC
Confidence 479999952 699999999999999999999999999999999 8999999999877544
No 13
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.72 E-value=8.7e-05 Score=86.81 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=59.1
Q ss_pred eEEEEEEEeCCCCceeceEEEEcceeeeEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCCcceeceEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIK 401 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~~~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~~i~dI~ 401 (1167)
..|+|+|.|.+|+||+||.|.+.|....+||.+|.|.+. |+||+|+|++++.+|..... .+.+..+.....++.
T Consensus 287 ~gI~G~V~d~~g~pi~~A~V~v~g~~~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~~~~~-~V~v~~~~~~~~~f~ 360 (363)
T cd06245 287 KGVHGVVTDKAGKPISGATIVLNGGHRVYTKEGGYFHVL-LAPGQHNINVIAEGYQQEHL-PVVVSHDEASSVKIV 360 (363)
T ss_pred cEEEEEEEcCCCCCccceEEEEeCCCceEeCCCcEEEEe-cCCceEEEEEEEeCceeEEE-EEEEcCCCeEEEEEE
Confidence 469999999999999999999966545689999999995 99999999999999876554 456655543333443
No 14
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.71 E-value=8.1e-05 Score=87.50 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=59.4
Q ss_pred EEEEEEEeCCCCceeceEEEEcceee-eEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCCcceeceEE
Q 001065 327 SVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIK 401 (1167)
Q Consensus 327 sV~G~V~d~~G~pl~Ga~V~l~G~~~-~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~~i~dI~ 401 (1167)
.|.|+|.|..|.||+||+|.|.|... .+||.+|.|.+ .|+||+|+|++++.+|..... .+.+..+.....|+.
T Consensus 327 gI~G~V~D~~g~pI~~AtV~V~g~~~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~~~~~-~V~V~~~~~~~vdf~ 400 (402)
T cd03865 327 GVKGFVKDLQGNPIANATISVEGIDHDITSAKDGDYWR-LLAPGNYKLTASAPGYLAVVK-KVAVPYSPAVRVDFE 400 (402)
T ss_pred ceEEEEECCCCCcCCCeEEEEEcCccccEECCCeeEEE-CCCCEEEEEEEEecCcccEEE-EEEEcCCCcEEEeEE
Confidence 49999999999999999999966544 58999999999 999999999999999876543 566766554444443
No 15
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.68 E-value=0.0001 Score=86.89 Aligned_cols=73 Identities=25% Similarity=0.368 Sum_probs=59.0
Q ss_pred eEEEEEEEeCCCCceeceEEEEcceee-eEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCCcceeceE
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADI 400 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~~-~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~~i~dI 400 (1167)
..|.|+|.|.+|+||+||.|.|.|... .+||.+|.| +..|+||+|+|++++.+|..... .+.+..+.....++
T Consensus 316 ~gI~G~V~D~~g~pi~~A~V~v~g~~~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~~~t~-~v~V~~~~~~~~df 389 (392)
T cd03864 316 QGIKGMVTDENNNGIANAVISVSGISHDVTSGTLGDY-FRLLLPGTYTVTASAPGYQPSTV-TVTVGPAEATLVNF 389 (392)
T ss_pred CeEEEEEECCCCCccCCeEEEEECCccceEECCCCcE-EecCCCeeEEEEEEEcCceeEEE-EEEEcCCCcEEEee
Confidence 369999999999999999999977554 689999999 88999999999999999876554 36666554332343
No 16
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.57 E-value=0.00024 Score=83.44 Aligned_cols=86 Identities=19% Similarity=0.326 Sum_probs=73.6
Q ss_pred eeEEEeeeEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCceeEEec
Q 001065 851 SFSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELG 930 (1167)
Q Consensus 851 ~f~~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~ 930 (1167)
.|-.+...+|..+|.|+ .+|+||++|.++|.|.+ ...+||.+|.|.+ .|+||+|.|+...-+|+ +..+.|+|.
T Consensus 290 ~~~~~~~~gI~G~V~D~-~~g~pl~~AtV~V~g~~---~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~--~~~~~v~V~ 362 (375)
T cd03863 290 QFMKQVHRGVRGFVLDA-TDGRGILNATISVADIN---HPVTTYKDGDYWR-LLVPGTYKVTASARGYD--PVTKTVEVD 362 (375)
T ss_pred HHHHHhcCeEEEEEEeC-CCCCCCCCeEEEEecCc---CceEECCCccEEE-ccCCeeEEEEEEEcCcc--cEEEEEEEc
Confidence 34345567899999987 45899999999999863 5678999999998 69999999999999998 667789999
Q ss_pred CCcEEEEEEEEEe
Q 001065 931 SGESREVIFQATR 943 (1167)
Q Consensus 931 ~G~~~~v~~~~~r 943 (1167)
+|+++.+.|...|
T Consensus 363 ~~~~~~~~~~L~~ 375 (375)
T cd03863 363 SKGAVQVNFTLSR 375 (375)
T ss_pred CCCcEEEEEEecC
Confidence 9999999998765
No 17
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.52 E-value=0.00019 Score=84.66 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=55.9
Q ss_pred eEEEEEEEeCCCCceeceEEEEccee-eeEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCCc
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHE-RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNM 394 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~-~~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~ 394 (1167)
..|.|+|.|.+|+|++||.|.|.+.. .++||++|.|.. +|+||+|+|++++.+|.......+.+..+.
T Consensus 296 ~~i~G~V~d~~g~pv~~A~V~v~~~~~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~~~~~~~v~v~~g~ 364 (372)
T cd03868 296 IGVKGFVRDASGNPIEDATIMVAGIDHNVTTAKFGDYWR-LLLPGTYTITAVAPGYEPSTVTDVVVKEGE 364 (372)
T ss_pred CceEEEEEcCCCCcCCCcEEEEEecccceEeCCCceEEe-cCCCEEEEEEEEecCCCceEEeeEEEcCCC
Confidence 46999999999999999999995533 369999999985 899999999999999876555444565554
No 18
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=97.47 E-value=0.00049 Score=61.59 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=48.7
Q ss_pred EEeeEEEeCCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEEEEEec
Q 001065 222 EIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKG 294 (1167)
Q Consensus 222 ~isG~V~~~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~ 294 (1167)
.|+|+|+.+|+|++||.|+|.+.. |+......|.++|.|+|- -.||+++|++..++
T Consensus 9 VItG~V~~~G~Pv~gAyVRLLD~s----------------gEFtaEvvts~~G~FRFf-aapG~WtvRal~~~ 64 (85)
T PF07210_consen 9 VITGRVTRDGEPVGGAYVRLLDSS----------------GEFTAEVVTSATGDFRFF-AAPGSWTVRALSRG 64 (85)
T ss_pred EEEEEEecCCcCCCCeEEEEEcCC----------------CCeEEEEEecCCccEEEE-eCCCceEEEEEccC
Confidence 589999989999999999999873 456789999999999996 78899999996544
No 19
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.37 E-value=0.0006 Score=67.51 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=52.1
Q ss_pred eEEEEEEEeCCCCceeceEEEE----cceee-------eEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCC
Q 001065 326 FSVGGRVVDENDMGVEGVKILV----DGHER-------SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPN 393 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l----~G~~~-------~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~ 393 (1167)
..|+|...|+.|+|++|+.|.| +-..+ ..||++|+|.| ++.||.|.|.+..+++.+.-.-.+.+.+.
T Consensus 3 V~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~-~~epG~Y~V~l~~~g~~~~~vG~I~V~~d 80 (134)
T PF08400_consen 3 VKISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSF-DVEPGVYRVTLKVEGRPPVYVGDITVYED 80 (134)
T ss_pred EEEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEE-EecCCeEEEEEEECCCCceeEEEEEEecC
Confidence 4689999999999999999999 22221 38999999999 99999999999988864433333445443
No 20
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=97.32 E-value=0.00052 Score=68.91 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=51.6
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCC---cEEEEEEeCCCceEEE---c-cccCceEEEEEEcCCcee
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYLF---K-NIIPGKYKLRASHPNLSV 195 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g---~~i~~ttTd~~G~f~f---~-~l~pG~Y~l~~~~~g~~~ 195 (1167)
.|++.|++.. +|.|++||.|+|...++ +.+.+++||+||++.+ . .+.||.|+|++...+|.-
T Consensus 28 ~Is~HVLDt~-------~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf~ 96 (137)
T PRK15036 28 ILSVHILNQQ-------TGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFK 96 (137)
T ss_pred CeEEEEEeCC-------CCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhhh
Confidence 5899999863 58999999999987543 4578999999999986 2 388999999998888763
No 21
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=97.31 E-value=0.00068 Score=79.84 Aligned_cols=65 Identities=22% Similarity=0.301 Sum_probs=53.0
Q ss_pred eEEEEEEEeCCCCceeceEEEEccee---eeEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcC
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHE---RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLP 392 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~---~~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p 392 (1167)
..|.|+|.|.+|+||+||.|.+.|.. ..+||++|.|.+ .|+||+|+|++++++|..... .+.+..
T Consensus 295 ~gI~G~V~D~~g~pi~~A~V~v~g~~~~~~~~T~~~G~y~~-~l~pG~Y~v~vsa~Gy~~~~~-~v~v~~ 362 (376)
T cd03866 295 LGVKGQVFDSNGNPIPNAIVEVKGRKHICPYRTNVNGEYFL-LLLPGKYMINVTAPGFKTVIT-NVIIPY 362 (376)
T ss_pred CceEEEEECCCCCccCCeEEEEEcCCceeEEEECCCceEEE-ecCCeeEEEEEEeCCcceEEE-EEEeCC
Confidence 36999999999999999999996653 348999999977 599999999999999865443 344443
No 22
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.30 E-value=0.0006 Score=80.71 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=51.5
Q ss_pred eEEEEEEEeCCCCceeceEEEEcceee-eEeCCCceEEECcCCCccEEEEEEeccccccce
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKL 385 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~~-~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~ 385 (1167)
.+|+|+|.|.+|+|+++|+|.+.|... ++||.+|.|.+ .|++|+|+|+++..+|.....
T Consensus 298 ~~i~G~V~d~~g~pl~~A~V~i~~~~~~~~Td~~G~f~~-~l~~G~y~l~vs~~Gy~~~~~ 357 (374)
T cd03858 298 RGIKGFVRDANGNPIANATISVEGINHDVTTAEDGDYWR-LLLPGTYNVTASAPGYEPQTK 357 (374)
T ss_pred CceEEEEECCCCCccCCeEEEEecceeeeEECCCceEEE-ecCCEeEEEEEEEcCcceEEE
Confidence 379999999999999999999976554 68999999998 589999999999999765444
No 23
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=97.28 E-value=0.0013 Score=65.21 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=51.1
Q ss_pred cEEEEEEEeccCCccccCCCCCCcceEEEEEeCCC------cEEEEEEeCCCceEEEccccCceEEEEEEcCCceeE
Q 001065 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG------DLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 196 (1167)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g------~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~ 196 (1167)
..|+|...+. .|.|++|++++|..... ....+..|+++|.|.|+ +.||.|.|.....||...
T Consensus 3 V~ISGvL~dg--------~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~-~epG~Y~V~l~~~g~~~~ 70 (134)
T PF08400_consen 3 VKISGVLKDG--------AGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFD-VEPGVYRVTLKVEGRPPV 70 (134)
T ss_pred EEEEEEEeCC--------CCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEE-ecCCeEEEEEEECCCCce
Confidence 3588977763 47999999999986543 33567899999999999 999999999999988654
No 24
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=97.23 E-value=0.00075 Score=80.13 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=54.3
Q ss_pred eEEEEEEEeCCCCceeceEEEEcceee-eEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcC
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLP 392 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~~-~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p 392 (1167)
..|.|+|.|.+|+||+||.|.+.|... ++||++|.|. ..|+||+|+|++++.+|..... .+.+..
T Consensus 318 ~~i~G~V~D~~g~pi~~A~V~v~g~~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~~~~~-~v~v~~ 383 (395)
T cd03867 318 RGIKGFVKDKDGNPIKGARISVRGIRHDITTAEDGDYW-RLLPPGIHIVSAQAPGYTKVMK-RVTLPA 383 (395)
T ss_pred ceeEEEEEcCCCCccCCeEEEEeccccceEECCCceEE-EecCCCcEEEEEEecCeeeEEE-EEEeCC
Confidence 369999999999999999999977654 6899999997 5899999999999999865443 455543
No 25
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.16 E-value=0.0011 Score=78.15 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=68.3
Q ss_pred EEeeeEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCceeEEecCCc
Q 001065 854 CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGE 933 (1167)
Q Consensus 854 ~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~G~ 933 (1167)
.+...+|..+|.|.+ |+||++|.++|.|.+ ...+||.+|.| +..|.||+|.|+....+|+ +..+.|+|.+++
T Consensus 312 ~~~~~gI~G~V~D~~--g~pi~~A~V~v~g~~---~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~--~~t~~v~V~~~~ 383 (392)
T cd03864 312 EQVHQGIKGMVTDEN--NNGIANAVISVSGIS---HDVTSGTLGDY-FRLLLPGTYTVTASAPGYQ--PSTVTVTVGPAE 383 (392)
T ss_pred HHhcCeEEEEEECCC--CCccCCeEEEEECCc---cceEECCCCcE-EecCCCeeEEEEEEEcCce--eEEEEEEEcCCC
Confidence 344568899999874 899999999999873 46789999999 9999999999999999998 667778999999
Q ss_pred EEEEEEEE
Q 001065 934 SREVIFQA 941 (1167)
Q Consensus 934 ~~~v~~~~ 941 (1167)
++++.|+.
T Consensus 384 ~~~~df~L 391 (392)
T cd03864 384 ATLVNFQL 391 (392)
T ss_pred cEEEeeEe
Confidence 88887764
No 26
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.06 E-value=0.0021 Score=75.35 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=67.7
Q ss_pred EEeeeEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCceeEEecCCc
Q 001065 854 CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGE 933 (1167)
Q Consensus 854 ~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~G~ 933 (1167)
.+..-+|.++|.|.. |+||++|.++|.|.. ..+||.+|.|.+. |.||+|.|+....+|+ +..+.|.|.+++
T Consensus 283 ~~~~~gI~G~V~d~~--g~pi~~A~V~v~g~~----~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~--~~~~~V~v~~~~ 353 (363)
T cd06245 283 VEAHKGVHGVVTDKA--GKPISGATIVLNGGH----RVYTKEGGYFHVL-LAPGQHNINVIAEGYQ--QEHLPVVVSHDE 353 (363)
T ss_pred HHcCcEEEEEEEcCC--CCCccceEEEEeCCC----ceEeCCCcEEEEe-cCCceEEEEEEEeCce--eEEEEEEEcCCC
Confidence 344567889999874 899999999999952 6789999999997 9999999999999999 567788999999
Q ss_pred EEEEEEEE
Q 001065 934 SREVIFQA 941 (1167)
Q Consensus 934 ~~~v~~~~ 941 (1167)
++.+.|+.
T Consensus 354 ~~~~~f~L 361 (363)
T cd06245 354 ASSVKIVL 361 (363)
T ss_pred eEEEEEEe
Confidence 98888865
No 27
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.04 E-value=0.0018 Score=76.34 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=67.7
Q ss_pred EeeeEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCceeEEecCCcE
Q 001065 855 QKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGES 934 (1167)
Q Consensus 855 ~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~G~~ 934 (1167)
+..-+|..+|.|.. |+|+++|.++|.|.+ .+.+|+.+|.|.+ .|.||+|.|+....+|+ +..+.|+|.++++
T Consensus 323 q~~~gI~G~V~D~~--g~pI~~AtV~V~g~~---~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~--~~~~~V~V~~~~~ 394 (402)
T cd03865 323 QVHRGVKGFVKDLQ--GNPIANATISVEGID---HDITSAKDGDYWR-LLAPGNYKLTASAPGYL--AVVKKVAVPYSPA 394 (402)
T ss_pred HhccceEEEEECCC--CCcCCCeEEEEEcCc---cccEECCCeeEEE-CCCCEEEEEEEEecCcc--cEEEEEEEcCCCc
Confidence 33335889999864 899999999999873 4678999999998 99999999999999999 5568899999999
Q ss_pred EEEEEEE
Q 001065 935 REVIFQA 941 (1167)
Q Consensus 935 ~~v~~~~ 941 (1167)
+.+.|+.
T Consensus 395 ~~vdf~L 401 (402)
T cd03865 395 VRVDFEL 401 (402)
T ss_pred EEEeEEe
Confidence 9988875
No 28
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=96.88 E-value=0.0016 Score=65.48 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=45.7
Q ss_pred EEEEEEEeC-CCCceeceEEEE---cce-----eeeEeCCCceEEE---C-cCCCccEEEEEEecccc
Q 001065 327 SVGGRVVDE-NDMGVEGVKILV---DGH-----ERSITDRDGYYKL---D-QVTSNRYTIEAVKVHYK 381 (1167)
Q Consensus 327 sV~G~V~d~-~G~pl~Ga~V~l---~G~-----~~~~TD~dG~y~~---~-~L~pG~Y~I~~~~~~y~ 381 (1167)
.|+++|+|. .|+|++|+.|.| ++. ..++||+||++.+ . .+.+|.|.|++...+|-
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Yf 95 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYF 95 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchhh
Confidence 599999997 899999999999 221 1269999999986 2 48899999999988873
No 29
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=96.86 E-value=0.0036 Score=73.83 Aligned_cols=68 Identities=25% Similarity=0.468 Sum_probs=53.5
Q ss_pred cEEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeEeecceEEEE
Q 001065 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVEL 205 (1167)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~V~v 205 (1167)
..|.|+|.+. ++.|++||+|+|...+ ....++||++|.|.+. |+||+|.|.++++||... ..++.+
T Consensus 295 ~gI~G~V~D~--------~g~pi~~A~V~v~g~~--~~~~~~T~~~G~y~~~-l~pG~Y~v~vsa~Gy~~~---~~~v~v 360 (376)
T cd03866 295 LGVKGQVFDS--------NGNPIPNAIVEVKGRK--HICPYRTNVNGEYFLL-LLPGKYMINVTAPGFKTV---ITNVII 360 (376)
T ss_pred CceEEEEECC--------CCCccCCeEEEEEcCC--ceeEEEECCCceEEEe-cCCeeEEEEEEeCCcceE---EEEEEe
Confidence 3589999975 3689999999997432 1346789999999776 999999999999999765 245656
Q ss_pred cc
Q 001065 206 GF 207 (1167)
Q Consensus 206 ~~ 207 (1167)
..
T Consensus 361 ~~ 362 (376)
T cd03866 361 PY 362 (376)
T ss_pred CC
Confidence 54
No 30
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=96.69 E-value=0.0041 Score=72.87 Aligned_cols=76 Identities=22% Similarity=0.294 Sum_probs=59.7
Q ss_pred EEEEEEEeCCCCceeceEEEEccee-eeEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCCcceeceEEEEe
Q 001065 327 SVGGRVVDENDMGVEGVKILVDGHE-RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKAIS 404 (1167)
Q Consensus 327 sV~G~V~d~~G~pl~Ga~V~l~G~~-~~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~~i~dI~~~~ 404 (1167)
-|.|.|+|.+|+||++|+|.|+|-. ..+|..+|-|-- -|+||.|.|+|.+++|...+. ++.|.+..+...|+.+.+
T Consensus 379 GIkG~V~D~~G~~I~NA~IsV~ginHdv~T~~~GDYWR-LL~PG~y~vta~A~Gy~~~tk-~v~V~~~~a~~~df~L~~ 455 (500)
T KOG2649|consen 379 GIKGLVFDDTGNPIANATISVDGINHDVTTAKEGDYWR-LLPPGKYIITASAEGYDPVTK-TVTVPPDRAARVNFTLQR 455 (500)
T ss_pred ccceeEEcCCCCccCceEEEEecCcCceeecCCCceEE-eeCCcceEEEEecCCCcceee-EEEeCCCCccceeEEEec
Confidence 4899999999999999999996654 468888886544 599999999999999877765 677777444445555543
No 31
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=96.69 E-value=1.7 Score=55.91 Aligned_cols=266 Identities=16% Similarity=0.187 Sum_probs=125.5
Q ss_pred EEEeCCCceEEEcccc--CceEEEEEEcCCceeEeecc-eEEEEccCCeeEeeeeeccceEEeeEEEeCCCceeceEEEE
Q 001065 165 SVITSSEGSYLFKNII--PGKYKLRASHPNLSVEVRGS-TEVELGFENGEVDDIFFAPGYEIRGLVVAQGNPILGVHIYL 241 (1167)
Q Consensus 165 ~ttTd~~G~f~f~~l~--pG~Y~l~~~~~g~~~~~~~~-~~V~v~~~~~~~~~~l~~~G~~isG~V~~~g~Pl~Ga~V~L 241 (1167)
.-.-+.||.+...-+| ||.|.+.+...+-.+. ++ -...|..+.......+.+... ..-.+.-...++..-++.+
T Consensus 623 ~c~dn~Dgt~~vsy~P~vpG~y~i~V~~~~k~vp--gSPF~~~Vt~~~s~r~s~~~Vgs~-~ev~in~~~~~~s~ltaeI 699 (1113)
T KOG0518|consen 623 RCYDNKDGTCSVSYTPTVPGVYKIEVKFGDKHVP--GSPFVALVTGDESIRTSHLSVGSI-HEVTINITEADLSVLTAEI 699 (1113)
T ss_pred eEEeCCCCcEEeccCCCCCceEEEEEEECCeeCC--CCCceEEEecccccccccceecce-eeEEeeccccCCceeEEEE
Confidence 4456789999888775 7999999987665543 12 122222100000000111100 0000111234555555566
Q ss_pred EECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccC--CccEEEEEEEecCCeEEEecCceEEEEEeccceeeee
Q 001065 242 YSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVP--CGQYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPE 319 (1167)
Q Consensus 242 ~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp--pG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~ 319 (1167)
.+..+. ..-|.+.--.+|+|.++-+| +|.+.|...+.|.+ +.-+.+.+.|.+... .
T Consensus 700 ~~PsGn---------------~~~c~~r~l~~g~~~itF~P~e~GeH~I~Vk~~G~h----VpgsPf~i~V~~~e~--d- 757 (1113)
T KOG0518|consen 700 VDPSGN---------------PEPCLVRRLPNGHDGITFTPREVGEHKINVKVAGKH----VPGSPFSIKVSESEI--D- 757 (1113)
T ss_pred ECCCCC---------------ccceeeEecCCCceeEEECCCcCcceEEEEEEcceE----CCCCCeEEEeccccc--c-
Confidence 554322 12366666667766655555 67888887655533 333334455544322 1
Q ss_pred eeEEeceEEEEE-------------EEeCCCCceeceEEEEcceee----eEeCCCceEEECcC--CCccEEEEEEeccc
Q 001065 320 KFQVTGFSVGGR-------------VVDENDMGVEGVKILVDGHER----SITDRDGYYKLDQV--TSNRYTIEAVKVHY 380 (1167)
Q Consensus 320 ~f~~~g~sV~G~-------------V~d~~G~pl~Ga~V~l~G~~~----~~TD~dG~y~~~~L--~pG~Y~I~~~~~~y 380 (1167)
..-..++|+ ++|+...+-.|..|.+.|... ..-.+||.+++.-- .||+|.|...-.+-
T Consensus 758 ---Ask~~v~g~g~~~G~t~ep~~fivDtr~agyGgLsi~~~Gpskvd~~~~d~~dGt~kV~ytPtepG~Y~I~i~Fad~ 834 (1113)
T KOG0518|consen 758 ---ASKVRVSGQGLKEGHTFEPAEFIVDTRKAGYGGLSISVQGPSKVDLNVEDREDGTCKVSYTPTEPGTYIINIKFADE 834 (1113)
T ss_pred ---ceeEEEecccccccccccchheEeccccCCCCceEEEEeCCcccccceeecCCCeEEEEEeCCCCceEEEEEEEcCc
Confidence 001122333 334444555566676655442 24457798776544 57999998764321
Q ss_pred cccceeeEEEcCCcce--eceEEEE--e--eEEEEEEEEcC------CcccEEEEEEcCCCcccceeeeecCCeEEEEE-
Q 001065 381 KFNKLKEYMVLPNMAS--IADIKAI--S--YDICGVVRTVG------SGNKVKVALTHGPDKVKPQVKQTDNNGNFCFE- 447 (1167)
Q Consensus 381 ~~~~~~~v~v~p~~~~--i~dI~~~--~--~~V~G~V~~~~------~~~~a~VtL~~~~~~~~~~~~~Td~~G~f~f~- 447 (1167)
..... .+.+.+.... +.+|... + ...-|+....+ ....+.+.+++-.+.........-.+|.||+.
T Consensus 835 ~I~gS-PftVkv~~~~~vvesi~~~~~~~~va~~g~~~~l~lk~~~~~~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrF 913 (1113)
T KOG0518|consen 835 HIKGS-PFTVKVTGESRVVESITRDREAPSVARVGHTCSLDLKATEASSQDITARVTDPSGRVFEAEIVDLGQGTYQVRF 913 (1113)
T ss_pred cCCCC-ceEEEecCCeeEeeeeeecccccceecccceeeeeeecCCCCccceEEEeeCCCCCccccEEEECCCceEEEEe
Confidence 12111 1223322211 1222111 1 11112222111 11234444443233222345566677877776
Q ss_pred --EcCeeEEEEEEe
Q 001065 448 --VPPGEYRLSAMA 459 (1167)
Q Consensus 448 --L~pG~Y~v~~~~ 459 (1167)
=.||.|+|.+.-
T Consensus 914 tP~e~G~~tl~V~y 927 (1113)
T KOG0518|consen 914 TPKEPGNHTLSVKY 927 (1113)
T ss_pred cCCCCCceEEEEEe
Confidence 446888887764
No 32
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=96.56 E-value=0.0097 Score=56.16 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=35.6
Q ss_pred EEEEEEEeccCCccccCCCCCC--cceEEEEEeC-----CCcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeEe-e
Q 001065 127 TLLGRVVGAIGGESCLDKGGGP--SNVNVELLSH-----SGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEV-R 198 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~pl--aGv~V~L~~~-----~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~-~ 198 (1167)
+|+|++...+| -..+. ..+.|-|... +-..-..+.||++|+|+|++|.||+|+|.+-.+|..-+. .
T Consensus 4 ~VsG~l~l~dg------~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~~g~~~~ 77 (95)
T PF14686_consen 4 SVSGRLTLSDG------VTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGIFGDYKV 77 (95)
T ss_dssp EEEEEEE---S------S--TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE----TTEEE
T ss_pred EEEEEEEEccC------cccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecccCceEE
Confidence 68899875422 01233 3456655522 223456788999999999999999999999776532111 1
Q ss_pred cceEEEEccC
Q 001065 199 GSTEVELGFE 208 (1167)
Q Consensus 199 ~~~~V~v~~~ 208 (1167)
.+..|+|..+
T Consensus 78 ~~~~ItV~~g 87 (95)
T PF14686_consen 78 ASDSITVSGG 87 (95)
T ss_dssp EEEEEEE-T-
T ss_pred ecceEEEcCC
Confidence 1245666543
No 33
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=96.47 E-value=0.005 Score=72.67 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=51.4
Q ss_pred EEEEEEEeCCCCceeceEEEEcceee-eEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcC
Q 001065 327 SVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLP 392 (1167)
Q Consensus 327 sV~G~V~d~~G~pl~Ga~V~l~G~~~-~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p 392 (1167)
-|.|.|+|.+|+||++|+|.|.|-.. .+|.++|.|-= -|.||+|+|++.+++|..... .+.+..
T Consensus 330 GikG~V~d~~g~~i~~a~i~v~g~~~~v~t~~~GdywR-ll~pG~y~v~~~a~gy~~~~~-~~~v~~ 394 (405)
T cd03869 330 GIKGVVRDKTGKGIPNAIISVEGINHDIRTASDGDYWR-LLNPGEYRVTAHAEGYTSSTK-NCEVGY 394 (405)
T ss_pred CceEEEECCCCCcCCCcEEEEecCccceeeCCCCceEE-ecCCceEEEEEEecCCCcccE-EEEEcC
Confidence 48999999999999999999977443 57888997543 499999999999999866654 355554
No 34
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=96.39 E-value=0.0088 Score=56.45 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=30.0
Q ss_pred eEEEEEEEeCCC---Cce-eceEEEEc-------ce---eeeEeCCCceEEECcCCCccEEEEEEecc
Q 001065 326 FSVGGRVVDEND---MGV-EGVKILVD-------GH---ERSITDRDGYYKLDQVTSNRYTIEAVKVH 379 (1167)
Q Consensus 326 ~sV~G~V~d~~G---~pl-~Ga~V~l~-------G~---~~~~TD~dG~y~~~~L~pG~Y~I~~~~~~ 379 (1167)
.+|+|+|...+| .+. ..+.|-+. ++ .-+.||++|+|+|++|+||+|++.+=.++
T Consensus 3 G~VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g 70 (95)
T PF14686_consen 3 GSVSGRLTLSDGVTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADG 70 (95)
T ss_dssp BEEEEEEE---SS--TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE--
T ss_pred CEEEEEEEEccCcccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEec
Confidence 579999987766 333 34555552 11 12689999999999999999999987744
No 35
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=96.32 E-value=0.0093 Score=57.91 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=47.4
Q ss_pred EEEEEEeccCCccccCCCCCCcceEEEEEeCCC---cEEEEEEeCCCceEE-----EccccCceEEEEEEcCCce
Q 001065 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYL-----FKNIIPGKYKLRASHPNLS 194 (1167)
Q Consensus 128 IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g---~~i~~ttTd~~G~f~-----f~~l~pG~Y~l~~~~~g~~ 194 (1167)
|+=.|++.. .|.|.+|+.|+|...++ +.+.+.+||+||++. -..++||.|+|++....|.
T Consensus 3 lstHVLDt~-------~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf 70 (112)
T TIGR02962 3 LSTHVLDTT-------SGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYF 70 (112)
T ss_pred ceEEEEeCC-------CCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhh
Confidence 455676642 58999999999987654 457899999999997 3567899999999877765
No 36
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=96.31 E-value=0.01 Score=60.63 Aligned_cols=53 Identities=32% Similarity=0.533 Sum_probs=44.1
Q ss_pred cEEEEEEEeccCCccccCCCCCCcceEEEEEeCCC----------------cEEEEEEeCCCceEEEccccCceEEE
Q 001065 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG----------------DLISSVITSSEGSYLFKNIIPGKYKL 186 (1167)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g----------------~~i~~ttTd~~G~f~f~~l~pG~Y~l 186 (1167)
..|.|+|++. ++.|+++|.|+|+..+. ..-....||++|+|.|..+.||.|.+
T Consensus 12 l~l~G~V~D~--------~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~ 80 (146)
T cd00421 12 LTLTGTVLDG--------DGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI 80 (146)
T ss_pred EEEEEEEECC--------CCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC
Confidence 4679999985 36899999999997653 12457899999999999999999995
No 37
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=96.30 E-value=0.012 Score=69.76 Aligned_cols=81 Identities=21% Similarity=0.378 Sum_probs=66.1
Q ss_pred eEEEeeeEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCcee-EEec
Q 001065 852 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQA-IELG 930 (1167)
Q Consensus 852 f~~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~-i~v~ 930 (1167)
|-.+-.++|..+|.|.. |+|+++|.+.|.+.+ ...+||++|.|. .+|+||.|.|+....+|+ +..+. +.|.
T Consensus 290 ~~~~~~~~i~G~V~d~~--g~pv~~A~V~v~~~~---~~~~td~~G~y~-~~l~~G~Y~l~vs~~Gf~--~~~~~~v~v~ 361 (372)
T cd03868 290 YLEQVHIGVKGFVRDAS--GNPIEDATIMVAGID---HNVTTAKFGDYW-RLLLPGTYTITAVAPGYE--PSTVTDVVVK 361 (372)
T ss_pred HHHHhCCceEEEEEcCC--CCcCCCcEEEEEecc---cceEeCCCceEE-ecCCCEEEEEEEEecCCC--ceEEeeEEEc
Confidence 33455688899999874 899999999999863 457999999998 489999999999999998 43443 5688
Q ss_pred CCcEEEEEEE
Q 001065 931 SGESREVIFQ 940 (1167)
Q Consensus 931 ~G~~~~v~~~ 940 (1167)
.|++..+.|+
T Consensus 362 ~g~~~~~~~~ 371 (372)
T cd03868 362 EGEATSVNFT 371 (372)
T ss_pred CCCeEEEeeE
Confidence 9999888775
No 38
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=96.15 E-value=4.9 Score=55.80 Aligned_cols=184 Identities=20% Similarity=0.256 Sum_probs=101.9
Q ss_pred CCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEcc-ccCceEEEEEEcCC-ceeE-eecc----eEEEEcc---CC--ee
Q 001065 144 KGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKN-IIPGKYKLRASHPN-LSVE-VRGS----TEVELGF---EN--GE 211 (1167)
Q Consensus 144 ~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~-l~pG~Y~l~~~~~g-~~~~-~~~~----~~V~v~~---~~--~~ 211 (1167)
++.|++|+.+.+.+.+|+++.+.+||++|+..|.+ -.+..|.+...... |... .... ..+-+.. .+ ..
T Consensus 316 sg~P~~g~~v~~~~~ngevl~~~~tds~G~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~d~s~f~V~g~~~~~~~~k 395 (1621)
T COG2373 316 SGKPVPGVEVSVLAGNGEVLVSGTTDSQGHAKFSNAKKPAALLLARKEDGDFLGLDLTGGVFDLSDFDVEGRAAPGYGLK 395 (1621)
T ss_pred CCCCCCCcEEEEEecCCcEEeeeEEccccceecccccCCceEEEEecCCCceEEEEcCCCccccccccccceecCCCceE
Confidence 58999999999999999999999999999999997 56666766654332 3221 0000 1122221 11 11
Q ss_pred E----eeeeeccceEEeeEEE--e-CCC-ceeceEEEEEECCCCcccCCCCCCCccccccee--eEEEeCCCCeEEEc--
Q 001065 212 V----DDIFFAPGYEIRGLVV--A-QGN-PILGVHIYLYSDDVGKVDCPQGSGNALGERKAL--CHAVSDADGKFMFK-- 279 (1167)
Q Consensus 212 ~----~~~l~~~G~~isG~V~--~-~g~-Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~--~~~~TD~~G~f~f~-- 279 (1167)
+ +..+-.+|=.+...+. . +++ ++.++.+.+.-.+ | +|..+ ...+.|++|-++|.
T Consensus 396 ~y~ftDRglYRpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~-------------P-dG~~~~~~~~~~~~~G~~~~~~~ 461 (1621)
T COG2373 396 VYLFTDRGLYRPGETVHVNALLRDFDGKTALDNQPLKLRVLD-------------P-DGSVLRTLTITLDEEGLYELSFP 461 (1621)
T ss_pred EEEecCcccCCCCceeeeeeeehhhcccccccCCCeEEEEEC-------------C-CCcEEEEEEEeccccCceEEeee
Confidence 0 1122234433333332 2 344 6676666554321 0 12222 34567888877653
Q ss_pred ---ccCCccEEEEEEEecCCe----EE---EecCceEEEEEeccceeeeeeeEEeceEEEEEEE--eCCCCceeceEEE
Q 001065 280 ---SVPCGQYELVPHYKGENT----VF---DVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVV--DENDMGVEGVKIL 346 (1167)
Q Consensus 280 ---~LppG~Y~v~~~~~~~~~----~~---~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V~--d~~G~pl~Ga~V~ 346 (1167)
+-+.|.|++...+.+... .| ++.|..+.|.+..+.... ..|-.+.+.|. .-.|.|++|.++.
T Consensus 462 l~~na~tG~w~l~~~~~~~~~~~s~~f~V~df~p~r~~i~l~~~k~~~-----~~g~~v~~~v~~~yL~GaPa~g~~~~ 535 (1621)
T COG2373 462 LPENALTGGYTLELYTGGKSAVISMSFRVEDFIPDRFKINLTLDKTEW-----VPGKDVKIKVDLRYLYGAPAAGLTVQ 535 (1621)
T ss_pred CCCCCCcceEEEEEEeCCccceeeeeEEhhHhCCceEEEecccccccc-----cCCCcEEEEEEEEecCCCcccCceee
Confidence 335688999997655321 12 256666666554432211 12222333332 3357888887776
No 39
>KOG0518 consensus Actin-binding cytoskeleton protein, filamin [Cytoskeleton]
Probab=96.12 E-value=7 Score=50.54 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=62.8
Q ss_pred eEEEEEeCCCcEEEeEEecC--CcEEE--eCCCCCccEEEEEEcCCC-cccCCceEEEEEcCC--CcCCcceeeEEEeCc
Q 001065 54 VTVELRTLDGLVKESTQCAP--NGYYF--IPVYDKGSFVIKVNGPEG-WSWNPDKVAVTVDDT--GCNGNEDINFRFTGF 126 (1167)
Q Consensus 54 v~v~L~~~~G~~~~~t~t~~--nG~y~--~~~l~~G~Y~l~~~~P~G-~~~~p~~~~v~Vd~~--~~s~~~dinf~~~g~ 126 (1167)
+++++++++|+.+..-..+. +|.|. +.--.+|.|++.+.--.. -.+.| ..+....+ .|.-...++. ..|.
T Consensus 392 levqV~gp~Gk~~~~~V~d~~~~~~h~vsY~pd~~G~y~i~v~~~gd~i~gSP--f~~ra~~dask~~~~~~i~~-~vg~ 468 (1113)
T KOG0518|consen 392 LEVQVVGPEGKEKEVVVRDNGRGGIHIVTYVPDCPGRYLIVVFYGGDPIPGSP--FTARAYPDASKEVLVPPINA-QVGK 468 (1113)
T ss_pred EEEEEECCCCCceeeEEEecCCCceEEEEEcCCCCCceEEEEEECCcccCCCc--eEEEeccCccceEecCCCcc-cccc
Confidence 57889999998876655544 54544 333369999997753210 11222 22332221 1111111110 0111
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCC-cEEEEEEeCCCceE--EEccccCceEEEEEEcCCce
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG-DLISSVITSSEGSY--LFKNIIPGKYKLRASHPNLS 194 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g-~~i~~ttTd~~G~f--~f~~l~pG~Y~l~~~~~g~~ 194 (1167)
. ...+.+.. ..+.+. ++..+.+.++ ++-....-..+|+| .|+.-.||+|.+.+...|-+
T Consensus 469 ~-~~~~vdak------~ag~g~--~~~~~~~pdn~n~~~~v~~~~dg~~~iv~ta~~~~~~~i~v~f~ge~ 530 (1113)
T KOG0518|consen 469 E-ANFVVDAK------AAGAGP--VTCTVVTPDNRNVPADVQKNGDGTFDIVFTAQDPGTYTIDVRFGGEH 530 (1113)
T ss_pred e-eeeEeehh------hccCCC--ceeEEeccccCCCCceeeeccCcceeeEeccCCCCcceEEEEECCee
Confidence 1 11122210 011222 5555555554 33344556778855 45555789999987655443
No 40
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=96.06 E-value=0.021 Score=67.74 Aligned_cols=77 Identities=18% Similarity=0.334 Sum_probs=63.6
Q ss_pred eeeEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCceeEEecC-CcE
Q 001065 856 KLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS-GES 934 (1167)
Q Consensus 856 ~l~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~-G~~ 934 (1167)
...+|..+|.|.. ++||++|.+.|.|. .....||.+|.|.+. |+||.|.+.....+|. +..+.+.+.. |++
T Consensus 296 a~~~i~G~V~d~~--g~pl~~A~V~i~~~---~~~~~Td~~G~f~~~-l~~G~y~l~vs~~Gy~--~~~~~v~v~~~g~~ 367 (374)
T cd03858 296 VHRGIKGFVRDAN--GNPIANATISVEGI---NHDVTTAEDGDYWRL-LLPGTYNVTASAPGYE--PQTKSVVVPNDNSA 367 (374)
T ss_pred cCCceEEEEECCC--CCccCCeEEEEecc---eeeeEECCCceEEEe-cCCEeEEEEEEEcCcc--eEEEEEEEecCCce
Confidence 3348899999874 89999999999875 245689999999985 9999999999999986 5577778877 888
Q ss_pred EEEEEE
Q 001065 935 REVIFQ 940 (1167)
Q Consensus 935 ~~v~~~ 940 (1167)
..+.|.
T Consensus 368 ~~~~~~ 373 (374)
T cd03858 368 VVVDFT 373 (374)
T ss_pred EEEeeE
Confidence 888764
No 41
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.91 E-value=0.01 Score=64.37 Aligned_cols=52 Identities=31% Similarity=0.514 Sum_probs=44.0
Q ss_pred ceEEEEEEEeCCCCceeceEEEE-----cce------------------eeeEeCCCceEEECcCCCccEEEEEE
Q 001065 325 GFSVGGRVVDENDMGVEGVKILV-----DGH------------------ERSITDRDGYYKLDQVTSNRYTIEAV 376 (1167)
Q Consensus 325 g~sV~G~V~d~~G~pl~Ga~V~l-----~G~------------------~~~~TD~dG~y~~~~L~pG~Y~I~~~ 376 (1167)
...|.|+|+|.+|+||++|.|.+ .|. -.+.||++|.|.|.-+.||.|-....
T Consensus 72 ~i~l~G~VlD~~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~~~ 146 (226)
T COG3485 72 RILLEGRVLDGNGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWRNG 146 (226)
T ss_pred eEEEEEEEECCCCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCCCC
Confidence 35789999999999999999998 232 12589999999999999999987655
No 42
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=95.78 E-value=15 Score=51.36 Aligned_cols=232 Identities=18% Similarity=0.185 Sum_probs=123.9
Q ss_pred CCCcccceEEEEEeCCCcEEEeEEecCCcEEEeCC-CCCccEEEEEEcCCCcccCCceE------EEEEcCCCcCCccee
Q 001065 47 ARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPV-YDKGSFVIKVNGPEGWSWNPDKV------AVTVDDTGCNGNEDI 119 (1167)
Q Consensus 47 ~~i~~sgv~v~L~~~~G~~~~~t~t~~nG~y~~~~-l~~G~Y~l~~~~P~G~~~~p~~~------~v~Vd~~~~s~~~di 119 (1167)
...+.+|+++.+++.+|.++.+.+|+++|+..+.. -.+..|.+....-.+|.+....- .+.|++.. ..+.++
T Consensus 316 sg~P~~g~~v~~~~~ngevl~~~~tds~G~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~d~s~f~V~g~~-~~~~~~ 394 (1621)
T COG2373 316 SGKPVPGVEVSVLAGNGEVLVSGTTDSQGHAKFSNAKKPAALLLARKEDGDFLGLDLTGGVFDLSDFDVEGRA-APGYGL 394 (1621)
T ss_pred CCCCCCCcEEEEEecCCcEEeeeEEccccceecccccCCceEEEEecCCCceEEEEcCCCcccccccccccee-cCCCce
Confidence 45577899999999999999999999999888775 45666666555555454331110 12233210 011122
Q ss_pred eE-EE-------eCcEEEEEEEeccCCccccCCCC-CCcc--eEEEEEeCCCcEEEE--EEeCCCceEEEc-----cccC
Q 001065 120 NF-RF-------TGFTLLGRVVGAIGGESCLDKGG-GPSN--VNVELLSHSGDLISS--VITSSEGSYLFK-----NIIP 181 (1167)
Q Consensus 120 nf-~~-------~g~~IsG~V~~~~g~~s~~~~~~-plaG--v~V~L~~~~g~~i~~--ttTd~~G~f~f~-----~l~p 181 (1167)
.+ .+ .|-.+...+...+- ++. .+.+ +++.+.+++|..+++ .++|++|-++|. +-+.
T Consensus 395 k~y~ftDRglYRpGE~v~~~~~~R~~------~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~na~t 468 (1621)
T COG2373 395 KVYLFTDRGLYRPGETVHVNALLRDF------DGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPENALT 468 (1621)
T ss_pred EEEEecCcccCCCCceeeeeeeehhh------cccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCCCCc
Confidence 21 11 23233333332211 123 4455 455667888977654 456788888776 3345
Q ss_pred ceEEEEEEcCC--ceeE----e----ecceEEEEccCCeeEeeeeeccceEEeeEEEe---CCCceeceEEE--EEECC-
Q 001065 182 GKYKLRASHPN--LSVE----V----RGSTEVELGFENGEVDDIFFAPGYEIRGLVVA---QGNPILGVHIY--LYSDD- 245 (1167)
Q Consensus 182 G~Y~l~~~~~g--~~~~----~----~~~~~V~v~~~~~~~~~~l~~~G~~isG~V~~---~g~Pl~Ga~V~--L~~~~- 245 (1167)
|.|+++....+ .... + .+...|.+..+. .....|-.+.++|.. .|.|.+|.++. |.-..
T Consensus 469 G~w~l~~~~~~~~~~~s~~f~V~df~p~r~~i~l~~~k-----~~~~~g~~v~~~v~~~yL~GaPa~g~~~~~~l~lr~~ 543 (1621)
T COG2373 469 GGYTLELYTGGKSAVISMSFRVEDFIPDRFKINLTLDK-----TEWVPGKDVKIKVDLRYLYGAPAAGLTVQGELDLRPT 543 (1621)
T ss_pred ceEEEEEEeCCccceeeeeEEhhHhCCceEEEeccccc-----ccccCCCcEEEEEEEEecCCCcccCceeeeEEEeecc
Confidence 89999987655 2221 1 111233322211 113456667777763 49999998887 43221
Q ss_pred CCcccCCCCC--CCc---cccc---ceeeEEEeCCCCeEEEcccCCc---cEEEEE
Q 001065 246 VGKVDCPQGS--GNA---LGER---KALCHAVSDADGKFMFKSVPCG---QYELVP 290 (1167)
Q Consensus 246 ~~~~~c~~g~--~~~---~~~g---~~~~~~~TD~~G~f~f~~LppG---~Y~v~~ 290 (1167)
...+...++- ..+ +... ......++|.+|+..|.--.++ +|.+..
T Consensus 544 ~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~D~~G~a~~~l~~~~~~s~~~~~~ 599 (1621)
T COG2373 544 RFSVPGFPGFTFGLADEEPNSLTFEEELELTVTDGKGKASLDLDLAETPSPYQLLV 599 (1621)
T ss_pred cccccCCcceeeeccccccccccccccccccccCCCCcEeEecccccCCCceEEEe
Confidence 1111111110 001 1100 1223488999999999744333 354444
No 43
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=95.74 E-value=0.031 Score=66.55 Aligned_cols=78 Identities=22% Similarity=0.283 Sum_probs=63.6
Q ss_pred EeeeEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCceeEEecC--C
Q 001065 855 QKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS--G 932 (1167)
Q Consensus 855 ~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~--G 932 (1167)
+-.-+|..+|.|+. |+|+++|.+.|.|. ....+||++|.|. ..|.||+|.|....-+|+ +..+.|+|.+ +
T Consensus 315 ~~~~~i~G~V~D~~--g~pi~~A~V~v~g~---~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~--~~~~~v~v~~~~~ 386 (395)
T cd03867 315 MVHRGIKGFVKDKD--GNPIKGARISVRGI---RHDITTAEDGDYW-RLLPPGIHIVSAQAPGYT--KVMKRVTLPARMK 386 (395)
T ss_pred hccceeEEEEEcCC--CCccCCeEEEEecc---ccceEECCCceEE-EecCCCcEEEEEEecCee--eEEEEEEeCCcCC
Confidence 33446889999874 89999999999986 2467899999996 689999999999988997 5567788855 6
Q ss_pred cEEEEEEE
Q 001065 933 ESREVIFQ 940 (1167)
Q Consensus 933 ~~~~v~~~ 940 (1167)
+..++.|+
T Consensus 387 ~~~~~d~~ 394 (395)
T cd03867 387 RAGRVDFV 394 (395)
T ss_pred CceEeeeE
Confidence 77777765
No 44
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=95.64 E-value=0.036 Score=52.64 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=37.4
Q ss_pred CCCCCcceEEEEEe-CCCcEEEEEEeCCCceEEEccccCceEEEEEE
Q 001065 144 KGGGPSNVNVELLS-HSGDLISSVITSSEGSYLFKNIIPGKYKLRAS 189 (1167)
Q Consensus 144 ~~~plaGv~V~L~~-~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~ 189 (1167)
++.|++||+|+|++ .+|+++.+.+||++|..+|+.. -..+.+.++
T Consensus 24 tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~-~~~~~viA~ 69 (97)
T PF11974_consen 24 TGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDST-KKPFLVIAR 69 (97)
T ss_pred CCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCC-CCCEEEEEE
Confidence 47999999999999 8899999999999999999966 333444443
No 45
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=95.40 E-value=0.023 Score=55.18 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=43.2
Q ss_pred EEEEEEeC-CCCceeceEEEE---cce---ee--eEeCCCceEE-----ECcCCCccEEEEEEecccc
Q 001065 328 VGGRVVDE-NDMGVEGVKILV---DGH---ER--SITDRDGYYK-----LDQVTSNRYTIEAVKVHYK 381 (1167)
Q Consensus 328 V~G~V~d~-~G~pl~Ga~V~l---~G~---~~--~~TD~dG~y~-----~~~L~pG~Y~I~~~~~~y~ 381 (1167)
|+=.|+|. .|+|.+|+.|.| ++. .+ ++||+||++. -+.+++|.|+|++....|-
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Yf 70 (112)
T TIGR02962 3 LSTHVLDTTSGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDYF 70 (112)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhhh
Confidence 45578885 899999999999 332 22 5899999987 4577899999999888873
No 46
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=95.33 E-value=0.026 Score=59.83 Aligned_cols=49 Identities=33% Similarity=0.565 Sum_probs=36.2
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee----------------eeEeCCCceEEECcCCCccEEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE----------------RSITDRDGYYKLDQVTSNRYTIE 374 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~----------------~~~TD~dG~y~~~~L~pG~Y~I~ 374 (1167)
+.|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+-
T Consensus 30 l~l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~~ 99 (183)
T PF00775_consen 30 LVLHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPIP 99 (183)
T ss_dssp EEEEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEES
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCCC
Confidence 4689999999999999999998 2321 14899999999999999999863
No 47
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=95.26 E-value=0.021 Score=61.97 Aligned_cols=48 Identities=33% Similarity=0.642 Sum_probs=40.7
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----cc----e---------------eeeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DG----H---------------ERSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G----~---------------~~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +| . -...||++|+|+|.-+.||.|.+
T Consensus 66 i~l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~ 137 (220)
T cd03464 66 IIVHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPW 137 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 4589999999999999999998 22 1 01489999999999999999976
No 48
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=95.11 E-value=0.075 Score=56.39 Aligned_cols=68 Identities=22% Similarity=0.445 Sum_probs=41.1
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCC-CcccccceeeEEEeCCCCeEEEcccCCccEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSG-NALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~-~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~ 289 (1167)
..|.|+|.+ +|+||+||.|.++..+..-........ ..+ .........||++|+|.|..+.||.|.+-
T Consensus 30 l~l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~-~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~~ 99 (183)
T PF00775_consen 30 LVLHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQP-DFNLRGRFRTDADGRYSFRTIKPGPYPIP 99 (183)
T ss_dssp EEEEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSS-TTTTEEEEEECTTSEEEEEEE----EEES
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCcccccccccccc-CCCcceEEecCCCCEEEEEeeCCCCCCCC
Confidence 467899996 589999999999987532211111111 011 12345788999999999999999999764
No 49
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=95.10 E-value=0.047 Score=54.20 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=42.2
Q ss_pred eeceEEEEc-cee---eeEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEc
Q 001065 340 VEGVKILVD-GHE---RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVL 391 (1167)
Q Consensus 340 l~Ga~V~l~-G~~---~~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~ 391 (1167)
.+..+|.|+ |+. .+....||.|.|.+|++|+|.|++....|.|.+. .+.+.
T Consensus 7 ~~~t~V~L~~g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~~~-RVdV~ 61 (123)
T PF09430_consen 7 PSSTRVTLNGGQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFPPY-RVDVS 61 (123)
T ss_pred CCCEEEEEeCCCccceEEEecCCCEEEeCCCCCceEEEEEECCCccccCE-EEEEe
Confidence 456778884 333 5789999999999999999999999999999987 46555
No 50
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=95.09 E-value=0.054 Score=52.65 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=42.3
Q ss_pred CCCCCcceEEEEEeCCC---cEEEEEEeCCCceEEE-----ccccCceEEEEEEcCCce
Q 001065 144 KGGGPSNVNVELLSHSG---DLISSVITSSEGSYLF-----KNIIPGKYKLRASHPNLS 194 (1167)
Q Consensus 144 ~~~plaGv~V~L~~~~g---~~i~~ttTd~~G~f~f-----~~l~pG~Y~l~~~~~g~~ 194 (1167)
.|.|.+|+.|+|...++ +.+.+..||+||+..- ..+.+|.|+|++....|.
T Consensus 12 ~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf 70 (112)
T cd05822 12 TGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAYF 70 (112)
T ss_pred CCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhhh
Confidence 47999999999997654 4688999999999863 357789999999877764
No 51
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.83 E-value=0.042 Score=56.83 Aligned_cols=48 Identities=27% Similarity=0.517 Sum_probs=40.7
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----cce-------------------eeeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGH-------------------ERSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~-------------------~~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|. -...||++|+|.|.-+.||.|.+
T Consensus 16 l~l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~ 87 (158)
T cd03459 16 IILEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPW 87 (158)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCC
Confidence 4589999999999999999998 221 01489999999999999999986
No 52
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=94.82 E-value=0.028 Score=61.99 Aligned_cols=48 Identities=31% Similarity=0.454 Sum_probs=40.8
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|
T Consensus 99 l~v~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 99 LLIRGTVRDLSGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 4689999999999999999999 3321 1489999999999999999965
No 53
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.77 E-value=0.043 Score=59.62 Aligned_cols=48 Identities=35% Similarity=0.643 Sum_probs=40.7
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----cce-------------------eeeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGH-------------------ERSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~-------------------~~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|. -...||++|+|+|.-+.||.|.+
T Consensus 61 i~l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~ 132 (220)
T TIGR02422 61 IIVHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPW 132 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 4589999999999999999998 221 02479999999999999999976
No 54
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=94.74 E-value=0.059 Score=55.18 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=42.7
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCCC----------------CeeeEEeecCcceEEEcCCCCCCE
Q 001065 946 YSATGTITLLSGQPKDGVSVEARSESK----------------GYYEETVTDTSGSYRLRGLHPDTT 996 (1167)
Q Consensus 946 ~s~~G~V~~~~g~p~~gv~v~~~~~~~----------------~~~~~~~Td~~G~~~i~gL~pg~~ 996 (1167)
-.+.|+|.+.+|.|+++|.|++--.+. ..++-..||++|.|+++.+.||.|
T Consensus 12 l~l~G~V~D~~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y 78 (146)
T cd00421 12 LTLTGTVLDGDGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPY 78 (146)
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCC
Confidence 356899999999999999999853221 357788999999999999999963
No 55
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.71 E-value=0.036 Score=61.45 Aligned_cols=49 Identities=31% Similarity=0.497 Sum_probs=41.4
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCCceEEECcCCCccEEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTIE 374 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~dG~y~~~~L~pG~Y~I~ 374 (1167)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|-
T Consensus 105 l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypip 172 (256)
T cd03458 105 LFVHGTVTDTDGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPIP 172 (256)
T ss_pred EEEEEEEEcCCCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccCC
Confidence 4589999999999999999998 3321 14899999999999999999764
No 56
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=94.70 E-value=0.033 Score=62.48 Aligned_cols=48 Identities=27% Similarity=0.557 Sum_probs=41.1
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|
T Consensus 133 l~v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~Ypi 199 (281)
T TIGR02438 133 LVFSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQI 199 (281)
T ss_pred EEEEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 4589999999999999999998 3421 2489999999999999999976
No 57
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=94.69 E-value=0.11 Score=56.37 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=49.5
Q ss_pred cceEEeeEEEeCCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEEEEEe
Q 001065 219 PGYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYK 293 (1167)
Q Consensus 219 ~G~~isG~V~~~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~ 293 (1167)
.|-.+..+|..+|+|++|+.|.+....... .........+||++|++.|.-..+|.|.|.+.+.
T Consensus 149 ~g~~~~~~vl~~GkPl~~a~V~~~~~~~~~-----------~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~~ 212 (215)
T PF10670_consen 149 AGDPLPFQVLFDGKPLAGAEVEAFSPGGWY-----------DVEHEAKTLKTDANGRATFTLPRPGLWLIRASHK 212 (215)
T ss_pred CCCEEEEEEEECCeEcccEEEEEEECCCcc-----------ccccceEEEEECCCCEEEEecCCCEEEEEEEEEe
Confidence 455678889999999999999998763210 0000146899999999999988899999999764
No 58
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=94.69 E-value=0.18 Score=47.84 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=48.5
Q ss_pred EEEEEEeeeEEEEEEEEc-CCCCccCccEEEEEe-CCCCeeeEEeecCcceEEEcCCCCCCEEEEEEE
Q 001065 937 VIFQATRVAYSATGTITL-LSGQPKDGVSVEARS-ESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVV 1002 (1167)
Q Consensus 937 v~~~~~r~~~s~~G~V~~-~~g~p~~gv~v~~~~-~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~ 1002 (1167)
+-|.+++......=.|++ .+|+|++||.|++++ .++....+.+||++|..++....+. +.+.++
T Consensus 4 lGl~ak~~~~~~~v~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~~~~--~~viA~ 69 (97)
T PF11974_consen 4 LGLTAKQGPDGLLVWVTSLSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDSTKKP--FLVIAR 69 (97)
T ss_pred eEEEEEEcCCCEEEEEeeCCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCCCCC--EEEEEE
Confidence 334555555555556665 569999999999999 7788999999999999999999444 444444
No 59
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.69 E-value=0.087 Score=54.56 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=45.8
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCC-ccc--ccceeeEEEeCCCCeEEEcccCCccEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGN-ALG--ERKALCHAVSDADGKFMFKSVPCGQYEL 288 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~-~~~--~g~~~~~~~TD~~G~f~f~~LppG~Y~v 288 (1167)
..+.|+|.+ +|+||+||.|.++..+..-....+.... .+. +........||++|+|+|..+.||.|.+
T Consensus 16 l~l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~ 87 (158)
T cd03459 16 IILEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPW 87 (158)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCC
Confidence 467899986 5899999999999875321111110000 000 1112457899999999999999999975
No 60
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.63 E-value=0.049 Score=57.78 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=40.3
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee------------------eeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE------------------RSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~------------------~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|..
T Consensus 37 l~l~G~V~D~~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~ 107 (185)
T cd03463 37 ITLEGRVYDGDGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPG 107 (185)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCC
Confidence 4689999999999999999998 2210 1479999999999999999974
No 61
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.59 E-value=0.04 Score=61.95 Aligned_cols=48 Identities=31% Similarity=0.548 Sum_probs=41.0
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|
T Consensus 125 l~l~G~V~D~~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~Ypi 191 (282)
T cd03460 125 LVMHGTVTDTDGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGV 191 (282)
T ss_pred EEEEEEEECCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcC
Confidence 4589999999999999999998 3321 2489999999999999999976
No 62
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=94.58 E-value=0.12 Score=45.89 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=42.8
Q ss_pred eeceEEEEcceeeeEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCCcceeceEEE
Q 001065 340 VEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKA 402 (1167)
Q Consensus 340 l~Ga~V~l~G~~~~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~~i~dI~~ 402 (1167)
.+||.|++||+....|. ..+..|++|.|+|++++++|..... .+.+.++.....++.+
T Consensus 10 p~gA~V~vdg~~~G~tp----~~~~~l~~G~~~v~v~~~Gy~~~~~-~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 10 PSGAEVYVDGKYIGTTP----LTLKDLPPGEHTVTVEKPGYEPYTK-TVTVKPGETTTVNVTL 67 (71)
T ss_pred CCCCEEEECCEEeccCc----ceeeecCCccEEEEEEECCCeeEEE-EEEECCCCEEEEEEEE
Confidence 46999999999887443 4777799999999999999865554 5677776544334433
No 63
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=94.56 E-value=0.042 Score=61.84 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=40.8
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|
T Consensus 129 l~v~G~V~D~~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~Ypi 195 (285)
T TIGR02439 129 LFLHGQVTDADGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGC 195 (285)
T ss_pred EEEEEEEECCCCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcC
Confidence 4589999999999999999998 2321 2489999999999999999976
No 64
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=94.55 E-value=0.065 Score=51.51 Aligned_cols=61 Identities=25% Similarity=0.384 Sum_probs=47.1
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCC---cEEEEEEeCCCceEEEc-----cccCceEEEEEEcCCce
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYLFK-----NIIPGKYKLRASHPNLS 194 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g---~~i~~ttTd~~G~f~f~-----~l~pG~Y~l~~~~~g~~ 194 (1167)
.++-.|++. ..|.|.+||+|+|+...+ +.+.++.||+||+..-. .+.+|.|++++....|.
T Consensus 10 ~LTTHVLDt-------a~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdYf 78 (124)
T COG2351 10 RLTTHVLDT-------ASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDYF 78 (124)
T ss_pred eeeeeeeec-------ccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchhh
Confidence 345566654 248999999999998776 47889999999998733 45678999999776665
No 65
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=94.53 E-value=0.11 Score=51.52 Aligned_cols=56 Identities=30% Similarity=0.537 Sum_probs=43.8
Q ss_pred CCCcceEEEEEeCCCcE-EEEEEeCCCceEEEccccCceEEEEEEcCCceeEeecceEEEEc
Q 001065 146 GGPSNVNVELLSHSGDL-ISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 206 (1167)
Q Consensus 146 ~plaGv~V~L~~~~g~~-i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~V~v~ 206 (1167)
.-+++.+|.|.. |.. ...+....||.|.|.+|++|+|.|.+.++.|.+. ...|.|.
T Consensus 5 ~~~~~t~V~L~~--g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~F~---~~RVdV~ 61 (123)
T PF09430_consen 5 NLPSSTRVTLNG--GQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYVFP---PYRVDVS 61 (123)
T ss_pred cCCCCEEEEEeC--CCccceEEEecCCCEEEeCCCCCceEEEEEECCCcccc---CEEEEEe
Confidence 456788998842 322 3578899999999999999999999999999886 2455554
No 66
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=94.52 E-value=0.092 Score=55.70 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=45.6
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcc----cccceeeEEEeCCCCeEEEcccCCccEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNAL----GERKALCHAVSDADGKFMFKSVPCGQYEL 288 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~----~~g~~~~~~~TD~~G~f~f~~LppG~Y~v 288 (1167)
..+.|+|.+ +|+||+||.|.++..+..- +-.+..... .+........||++|+|+|..+.||.|-.
T Consensus 37 l~l~G~V~D~~g~Pi~gA~VeiWqad~~G--~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~ 107 (185)
T cd03463 37 ITLEGRVYDGDGAPVPDAMLEIWQADAAG--RYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPG 107 (185)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEcCCCCC--ccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCC
Confidence 467899985 5899999999999875321 111111100 11112457899999999999999999864
No 67
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=94.49 E-value=0.084 Score=51.83 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=46.0
Q ss_pred EEEEEEeccCCccccCCCCCCcceEEEEEeCC-C---cEEEEEEeCCCceEE--E--ccccCceEEEEEEcCCce
Q 001065 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS-G---DLISSVITSSEGSYL--F--KNIIPGKYKLRASHPNLS 194 (1167)
Q Consensus 128 IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~-g---~~i~~ttTd~~G~f~--f--~~l~pG~Y~l~~~~~g~~ 194 (1167)
|+=.|++.. .|.|.+|+.|+|+..+ + +.+.+.+||+||+.. + ..+.+|.|+|++.-..|.
T Consensus 9 ittHVLDt~-------~G~PAaGV~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf 76 (121)
T cd05821 9 LMVKVLDAV-------RGSPAANVAVKVFKKTADGSWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFDTKAYW 76 (121)
T ss_pred cEEEEEECC-------CCccCCCCEEEEEEecCCCceEEEEEEEECCCCCCCCccCccccCCeeEEEEEehhHhh
Confidence 455676642 5899999999998754 3 568899999999995 2 245689999999776664
No 68
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=94.45 E-value=0.046 Score=61.36 Aligned_cols=49 Identities=31% Similarity=0.467 Sum_probs=41.5
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCCceEEECcCCCccEEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTIE 374 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~dG~y~~~~L~pG~Y~I~ 374 (1167)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.|-
T Consensus 121 l~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypip 188 (277)
T cd03461 121 CFVHGRVTDTDGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPIP 188 (277)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCCC
Confidence 4589999999999999999998 3311 24899999999999999999863
No 69
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=94.44 E-value=0.044 Score=60.43 Aligned_cols=48 Identities=33% Similarity=0.437 Sum_probs=40.8
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..+.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|-|
T Consensus 100 l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Ypi 166 (247)
T cd03462 100 LLFRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQI 166 (247)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcCC
Confidence 4589999999999999999998 3311 2489999999999999999965
No 70
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=94.40 E-value=0.099 Score=50.77 Aligned_cols=60 Identities=18% Similarity=0.414 Sum_probs=45.5
Q ss_pred EEEEEEeccCCccccCCCCCCcceEEEEEeCC--C--cEEEEEEeCCCceEEE----ccccCceEEEEEEcCCce
Q 001065 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G--DLISSVITSSEGSYLF----KNIIPGKYKLRASHPNLS 194 (1167)
Q Consensus 128 IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~--g--~~i~~ttTd~~G~f~f----~~l~pG~Y~l~~~~~g~~ 194 (1167)
|+=.|++.. .|.|.+|+.|+|...+ + +.+.+.+||+||+..= ..+.+|.|+|++.-..|.
T Consensus 3 lStHVLDt~-------~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~~Yf 70 (113)
T cd05469 3 LMVKVLDAV-------RGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFDTKSYW 70 (113)
T ss_pred ceEEEEeCC-------CCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccceEEEEEEehHHhH
Confidence 444566642 5799999999998754 2 5688999999999852 356789999998766664
No 71
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=94.40 E-value=0.097 Score=57.85 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=46.8
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCC-cccccceeeEEEeCCCCeEEEcccCCccEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGN-ALGERKALCHAVSDADGKFMFKSVPCGQYEL 288 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~-~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v 288 (1167)
..+.|+|.+ +|+||+||.|.++..+..- +-.+..+ .+ .........||++|+|.|..+.||.|-+
T Consensus 99 l~v~G~V~D~~G~Pv~~A~VeiWqad~~G--~Y~~~~~~~~-~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 99 LLIRGTVRDLSGTPVAGAVIDVWHSTPDG--KYSGFHDNIP-DDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCC--CCCCCCCCCC-CCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 468899996 5999999999999875321 1111111 11 1233578899999999999999999965
No 72
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.38 E-value=0.066 Score=58.24 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=51.3
Q ss_pred eEEEEEEEEcCCCCccCccEEEEE-eC-CC----------------CeeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 945 AYSATGTITLLSGQPKDGVSVEAR-SE-SK----------------GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 945 ~~s~~G~V~~~~g~p~~gv~v~~~-~~-~~----------------~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
.-++.|+|.+.+|.|++++.||+- .. .+ .-.+-+.||++|.|+++.++||+ |-..-..+
T Consensus 72 ~i~l~G~VlD~~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~-yp~~~~~~-- 148 (226)
T COG3485 72 RILLEGRVLDGNGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGP-YPWRNGGP-- 148 (226)
T ss_pred eEEEEEEEECCCCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeeccc-ccCCCCCC--
Confidence 346799999999999999999973 11 10 14577899999999999999998 44333321
Q ss_pred CCCcceeecCCceEEEEec
Q 001065 1007 FGSTKIERASPESVTVKVG 1025 (1167)
Q Consensus 1007 ~~~~~i~~~~p~~~~v~v~ 1025 (1167)
. . | |.|+.+.|.
T Consensus 149 ---~-~-R--~aHih~~v~ 160 (226)
T COG3485 149 ---M-W-R--PAHIHFSVF 160 (226)
T ss_pred ---c-C-c--cceeEEEEe
Confidence 1 1 2 667777664
No 73
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=94.14 E-value=0.14 Score=56.85 Aligned_cols=55 Identities=24% Similarity=0.440 Sum_probs=44.7
Q ss_pred cEEEEEEEeccCCccccCCCCCCcceEEEEEeCC--C------------cEEEEEEeCCCceEEEccccCceEEEEE
Q 001065 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G------------DLISSVITSSEGSYLFKNIIPGKYKLRA 188 (1167)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~--g------------~~i~~ttTd~~G~f~f~~l~pG~Y~l~~ 188 (1167)
..+.|+|++. ++.|++||.|+++..+ | ..-....||++|+|.|.-+.||.|-+-.
T Consensus 105 l~l~G~V~D~--------~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypip~ 173 (256)
T cd03458 105 LFVHGTVTDT--------DGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPIPP 173 (256)
T ss_pred EEEEEEEEcC--------CCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccCCC
Confidence 3578999975 3699999999999654 3 1234788999999999999999998754
No 74
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=94.07 E-value=0.077 Score=56.68 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=40.4
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee-------------------eeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~-------------------~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|+|.-+.||.|.+
T Consensus 40 l~l~G~V~D~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 40 IRLEGRVLDGDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 4689999999999999999998 2210 1479999999999999999976
No 75
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=94.02 E-value=0.17 Score=54.88 Aligned_cols=57 Identities=30% Similarity=0.320 Sum_probs=47.3
Q ss_pred CcEEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcE-----EEEEEeCCCceEEEccccCceEEEEEEc
Q 001065 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDL-----ISSVITSSEGSYLFKNIIPGKYKLRASH 190 (1167)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~-----i~~ttTd~~G~f~f~~l~pG~Y~l~~~~ 190 (1167)
|-.+..+|+-. |+|++|+.|.+...++.. ....+||++|++.|.-..||.|.|.+.+
T Consensus 150 g~~~~~~vl~~---------GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 150 GDPLPFQVLFD---------GKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRASH 211 (215)
T ss_pred CCEEEEEEEEC---------CeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEEEE
Confidence 44577788763 699999999998766432 5689999999999997799999999876
No 76
>smart00095 TR_THY Transthyretin.
Probab=93.92 E-value=0.14 Score=50.36 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=45.7
Q ss_pred EEEEEEeccCCccccCCCCCCcceEEEEEeCC-C---cEEEEEEeCCCceEE--E--ccccCceEEEEEEcCCce
Q 001065 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS-G---DLISSVITSSEGSYL--F--KNIIPGKYKLRASHPNLS 194 (1167)
Q Consensus 128 IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~-g---~~i~~ttTd~~G~f~--f--~~l~pG~Y~l~~~~~g~~ 194 (1167)
|+=.|++.. .|.|.+|+.|+|+..+ + +.+.+.+||+||+.. + ..+.+|.|+|++.-..|.
T Consensus 6 lTtHVLDt~-------~G~PAagv~V~L~~~~~~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Yf 73 (121)
T smart00095 6 LMVKVLDAV-------RGSPAVNVAVKVFKKTEEGTWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFDTKSYW 73 (121)
T ss_pred eEEEEEECC-------CCccCCCCEEEEEEeCCCCceEEEEEEecCCCccccCccCcccccceEEEEEEehhHhH
Confidence 445666642 5899999999998754 3 568899999999995 2 346789999999766554
No 77
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=93.91 E-value=0.12 Score=56.98 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=46.8
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~ 289 (1167)
..+.|+|.+ +|+||+||.|.++..+..-....+.. ..+. ........||++|+|.|..+.||.|-+-
T Consensus 100 l~l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~-~~~~-~~~RG~~~Td~~G~y~F~Ti~P~~YpiP 167 (247)
T cd03462 100 LLFRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHP-NIPE-DYYRGKIRTDEDGRYEVRTTVPVPYQIP 167 (247)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCC-CCCC-CCCEEEEEeCCCCCEEEEEECCCCcCCC
Confidence 357899985 59999999999998753221111110 1111 1234678999999999999999999763
No 78
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=93.84 E-value=0.12 Score=58.25 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=47.3
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~ 289 (1167)
..+.|+|.+ +|+||+||.|.++..+..- +-.+...........+...||++|+|.|..+.||.|-+-
T Consensus 129 l~v~G~V~D~~G~PI~gA~VeIWqad~~G--~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~YpiP 196 (285)
T TIGR02439 129 LFLHGQVTDADGKPIAGAKVELWHANTKG--NYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGCP 196 (285)
T ss_pred EEEEEEEECCCCCCcCCcEEEEEccCCCC--CcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcCC
Confidence 357899985 5999999999999875321 111111111122345789999999999999999999764
No 79
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=93.83 E-value=0.065 Score=52.12 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=42.6
Q ss_pred EEEEEEeccCCccccCCCCCCcceEEEEEeCC--C--cEEEEEEeCCCceEE-----EccccCceEEEEEEcCCc
Q 001065 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G--DLISSVITSSEGSYL-----FKNIIPGKYKLRASHPNL 193 (1167)
Q Consensus 128 IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~--g--~~i~~ttTd~~G~f~-----f~~l~pG~Y~l~~~~~g~ 193 (1167)
|+=.|++.. .|.|.+|+.|+|...+ + ..+.+.+||+||+.. -..+.+|.|+|++.-..|
T Consensus 3 iStHVLDt~-------~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Y 70 (112)
T PF00576_consen 3 ISTHVLDTT-------TGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGDY 70 (112)
T ss_dssp EEEEEEETT-------TTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHHH
T ss_pred cEEEEeeCC-------CCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHHh
Confidence 455677642 5799999999998554 2 668899999999992 246779999999876554
No 80
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=93.77 E-value=0.12 Score=58.03 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=47.1
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~ 289 (1167)
..+.|+|.+ +|+||+||.|.++..+..-.. .+...........+...||++|+|.|..+.||.|-+-
T Consensus 125 l~l~G~V~D~~G~PI~~A~VeiWqad~~G~Y--s~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~YpiP 192 (282)
T cd03460 125 LVMHGTVTDTDGKPVPGAKVEVWHANSKGFY--SHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGVP 192 (282)
T ss_pred EEEEEEEECCCCCCcCCcEEEEECCCCCCCc--CCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcCC
Confidence 357899985 599999999999987532111 1110000112335789999999999999999999764
No 81
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=93.59 E-value=0.18 Score=54.77 Aligned_cols=68 Identities=16% Similarity=0.302 Sum_probs=46.2
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCC-CCCccc--ccceeeEEEeCCCCeEEEcccCCccEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQG-SGNALG--ERKALCHAVSDADGKFMFKSVPCGQYEL 288 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g-~~~~~~--~g~~~~~~~TD~~G~f~f~~LppG~Y~v 288 (1167)
..|.|+|.+ +|+||+||.|.++..+..-....+. ....+. +........||++|+|+|..+.||.|.+
T Consensus 66 i~l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp~ 137 (220)
T cd03464 66 IIVHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYPW 137 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 467899995 5999999999999875321111110 000000 1122567899999999999999999976
No 82
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=93.57 E-value=0.1 Score=58.69 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=42.4
Q ss_pred EEEEEEEcCCCCccCccEEEEEe--CCC------------CeeeEEeecCcceEEEcCCCCCCEEEE
Q 001065 947 SATGTITLLSGQPKDGVSVEARS--ESK------------GYYEETVTDTSGSYRLRGLHPDTTYVI 999 (1167)
Q Consensus 947 s~~G~V~~~~g~p~~gv~v~~~~--~~~------------~~~~~~~Td~~G~~~i~gL~pg~~y~v 999 (1167)
-+.|+|.+.+|+|++|+.|++-- .++ ..++...||++|+|+++-+.||. |-|
T Consensus 134 ~v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~-Ypi 199 (281)
T TIGR02438 134 VFSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAP-YQI 199 (281)
T ss_pred EEEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCC-cCC
Confidence 45899999999999999999841 111 24778999999999999999997 443
No 83
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=93.41 E-value=0.21 Score=54.45 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=45.9
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCC-CCCCccc--ccceeeEEEeCCCCeEEEcccCCccEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQ-GSGNALG--ERKALCHAVSDADGKFMFKSVPCGQYEL 288 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~-g~~~~~~--~g~~~~~~~TD~~G~f~f~~LppG~Y~v 288 (1167)
..|.|+|.+ +|+||+||.|.++..+..-..... .....+. +........||++|+|+|..+.||.|.+
T Consensus 61 i~l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~~ 132 (220)
T TIGR02422 61 IIVHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYPW 132 (220)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCccC
Confidence 467899985 589999999999987532111100 0000001 1122567899999999999999999976
No 84
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=93.38 E-value=0.21 Score=53.38 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=45.8
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCc-----ccccceeeEEEeCCCCeEEEcccCCccEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNA-----LGERKALCHAVSDADGKFMFKSVPCGQYEL 288 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~-----~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v 288 (1167)
..+.|+|.+ +|+||+||.|.++..+..- +-.+..+. ..+........||++|+|+|..+.||.|..
T Consensus 40 l~l~G~V~D~~g~Pv~~A~VeiWqad~~G--~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 40 IRLEGRVLDGDGHPVPDALIEIWQADAAG--RYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCC--ccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 467899985 5999999999999875321 11111100 001122457899999999999999999876
No 85
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=93.37 E-value=0.19 Score=56.54 Aligned_cols=67 Identities=19% Similarity=0.337 Sum_probs=47.3
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~ 289 (1167)
..+.|+|.+ +|+||+||.|.++..+..-....+.. ..+ .....+...||++|+|.|..+.||.|-+-
T Consensus 121 l~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~-~~~-~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypip 188 (277)
T cd03461 121 CFVHGRVTDTDGKPLPGATVDVWQADPNGLYDVQDP-DQP-EFNLRGKFRTDEDGRYAFRTLRPTPYPIP 188 (277)
T ss_pred EEEEEEEEcCCCCCcCCcEEEEECcCCCCCcCCCCC-CCC-CCCCeEEEEeCCCCCEEEEEECCCCcCCC
Confidence 467899996 59999999999998653211111111 011 12345789999999999999999999863
No 86
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=93.23 E-value=0.19 Score=59.40 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=51.4
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeEeecceEEEEc
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 206 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~V~v~ 206 (1167)
.|.|.|++. +|.|+++|+|++...+ ...+|..+|-|==- |+||+|.|.++++||.... ..|+|.
T Consensus 379 GIkG~V~D~--------~G~~I~NA~IsV~gin----Hdv~T~~~GDYWRL-L~PG~y~vta~A~Gy~~~t---k~v~V~ 442 (500)
T KOG2649|consen 379 GIKGLVFDD--------TGNPIANATISVDGIN----HDVTTAKEGDYWRL-LPPGKYIITASAEGYDPVT---KTVTVP 442 (500)
T ss_pred ccceeEEcC--------CCCccCceEEEEecCc----CceeecCCCceEEe-eCCcceEEEEecCCCccee---eEEEeC
Confidence 489999985 4799999999996543 35678888988644 8999999999999999762 356665
Q ss_pred c
Q 001065 207 F 207 (1167)
Q Consensus 207 ~ 207 (1167)
.
T Consensus 443 ~ 443 (500)
T KOG2649|consen 443 P 443 (500)
T ss_pred C
Confidence 4
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=93.03 E-value=65 Score=46.87 Aligned_cols=173 Identities=14% Similarity=0.192 Sum_probs=94.1
Q ss_pred EEEEE-EcCeeEEEEEEeecCCCCCCeeeeCceEEEEEcCcccceEEEEe--eeEE--EEEEeeccCCCCceEEEEEEcC
Q 001065 443 NFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVVKSPLLNIEFSQA--LVNV--LGNVACKERCGPLVTVTLMRLG 517 (1167)
Q Consensus 443 ~f~f~-L~pG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V~~p~~~I~f~q~--~a~V--~G~V~~~~~~~~~~~VtL~~~~ 517 (1167)
..+.. ..||.|+|+..... .+.+...+.+++|..++.++.+.-. .+.+ .+++++.-..+.+++..+..-+
T Consensus 1831 ~v~~Tf~~aG~ytV~L~AsN-----~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864 1831 HACMTFPDAGTFAIRLNASN-----AVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGG 1905 (2740)
T ss_pred eeEEecCCCeEEEEEEEEEc-----ccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCC
Confidence 45566 89999999999863 3344555666777555555544311 0000 1112221122223344443322
Q ss_pred cccccCCcceeEEEecCCCcEEEcccCCccEEEEEEeecccccccCCCceEEeeeEEEEEecCCccceeEEE--------
Q 001065 518 QKHYDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTNDVKGVEFVQ-------- 589 (1167)
Q Consensus 518 ~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~~~~~v~V~~~~~~~~~F~q-------- 589 (1167)
+. .... +...+|+-.--.||+|.|.+... ...-|.+....|+|.+. +.++.+..
T Consensus 1906 gs--------~~~~-t~~~t~~HsY~~~G~Y~VtV~A~--------N~Vs~~~a~~~V~Vle~-V~gL~I~~~c~~~~~~ 1967 (2740)
T TIGR00864 1906 AA--------PEVL-QPGPRFSHSFPRVDDHMVNLRAK--------NEVSCAQANLHIEVLEA-VRGLQIPDCCAAGIAT 1967 (2740)
T ss_pred CC--------ceee-cCCCeEEeecCCCCcEEEEEEEE--------eccceeeeeEEEEEEEe-ccceEecCCcccceec
Confidence 21 1112 23456777777799999999864 23345666667776432 34443322
Q ss_pred ---eeeEEEEEecccEEEEEE-e-cCCCeeeEEEccc-eeeEEecCCceEEEEee
Q 001065 590 ---KGYWLNVISTHDVDAYMT-Q-QDGSHVPLKVKKG-SQHICVESPGVHNLHFV 638 (1167)
Q Consensus 590 ---~Gy~~~i~~sh~~~~~~~-~-~~~~~~~~~l~kG-~~~~c~~~~G~y~~~~~ 638 (1167)
.=|+.++...+++...|. . ....+-.+.+..| ..++..+.+|.|.|+..
T Consensus 1968 g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~~~~G~~~I~v~ 2022 (2740)
T TIGR00864 1968 GEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTAEAAGLLEIQLG 2022 (2740)
T ss_pred CceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEccCCCcEEEEEEE
Confidence 134556788888887664 1 1111112334444 35667789999999973
No 88
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=92.97 E-value=0.28 Score=58.30 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=49.1
Q ss_pred cEEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeEeecceEEEE
Q 001065 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVEL 205 (1167)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~V~v 205 (1167)
..|.|.|.+. ++.|+++|+|.+...+ ...+|.++|.|-=- |.||+|.|.++++||.... ..++|
T Consensus 329 ~GikG~V~d~--------~g~~i~~a~i~v~g~~----~~v~t~~~GdywRl-l~pG~y~v~~~a~gy~~~~---~~~~v 392 (405)
T cd03869 329 RGIKGVVRDK--------TGKGIPNAIISVEGIN----HDIRTASDGDYWRL-LNPGEYRVTAHAEGYTSST---KNCEV 392 (405)
T ss_pred cCceEEEECC--------CCCcCCCcEEEEecCc----cceeeCCCCceEEe-cCCceEEEEEEecCCCccc---EEEEE
Confidence 3589999875 3689999999986433 24557788988633 8999999999999998652 34555
Q ss_pred c
Q 001065 206 G 206 (1167)
Q Consensus 206 ~ 206 (1167)
.
T Consensus 393 ~ 393 (405)
T cd03869 393 G 393 (405)
T ss_pred c
Confidence 4
No 89
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=92.02 E-value=0.84 Score=40.39 Aligned_cols=60 Identities=17% Similarity=0.291 Sum_probs=48.4
Q ss_pred cceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCceeEEecCCcEEEEEEEEEee
Q 001065 875 PSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRV 944 (1167)
Q Consensus 875 ~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~ 944 (1167)
+|+.+.|.|. +.. ..-+.+..|.||.|.++..+.+|. +-.+.|+|++|++..+.+..++.
T Consensus 11 ~gA~V~vdg~--~~G------~tp~~~~~l~~G~~~v~v~~~Gy~--~~~~~v~v~~~~~~~v~~~L~~~ 70 (71)
T PF08308_consen 11 SGAEVYVDGK--YIG------TTPLTLKDLPPGEHTVTVEKPGYE--PYTKTVTVKPGETTTVNVTLEPQ 70 (71)
T ss_pred CCCEEEECCE--Eec------cCcceeeecCCccEEEEEEECCCe--eEEEEEEECCCCEEEEEEEEEEC
Confidence 4677888775 333 223477789999999999999997 78899999999999999988774
No 90
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=91.77 E-value=1 Score=43.51 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=47.1
Q ss_pred CcEEEEEEEeccCCccccCCCCCCcceEEEEEeCCC----cEEEEEEeCCCceEEE----ccccCceEEEEEEcCCc
Q 001065 125 GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG----DLISSVITSSEGSYLF----KNIIPGKYKLRASHPNL 193 (1167)
Q Consensus 125 g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g----~~i~~ttTd~~G~f~f----~~l~pG~Y~l~~~~~g~ 193 (1167)
|-.|+-.|++..+ |.|.+||.|.|+..++ +.+.+..|+++|+-.. ..+.||.|+++.....|
T Consensus 20 ~~~itahVLd~s~-------GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y 89 (132)
T KOG3006|consen 20 GPPITAHVLDISR-------GSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPY 89 (132)
T ss_pred CCCcEeEEeeccc-------CCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEecccc
Confidence 4557778877533 7899999999875443 5688999999999752 23789999999876655
No 91
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=91.02 E-value=0.59 Score=45.56 Aligned_cols=90 Identities=21% Similarity=0.277 Sum_probs=63.2
Q ss_pred EEEEEEEccCCCCCcccceEEEEECCc---cee--eceeecCCceEE-----EecCCCcceEEeeccCccc-------c-
Q 001065 859 QISVRIYSKDDAGEPIPSVLLSLSGDD---GYR--NNSVSWAGGSFH-----FDNLFPGNFYLRPLLKEYA-------F- 920 (1167)
Q Consensus 859 ~i~~~v~~~~~~~~pl~gvllslsg~~---~~r--~n~~T~~~G~~~-----f~~L~PG~Y~~~~~~key~-------~- 920 (1167)
.|+-+|.|. ..|.|-+||.+.|...+ .+. ....||+||++. -..|.||.|.|+--.++|= |
T Consensus 2 ~iStHVLDt-~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf~~~~~~~F~ 80 (112)
T PF00576_consen 2 PISTHVLDT-TTGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTGDYFAAQGIPSFY 80 (112)
T ss_dssp SEEEEEEET-TTTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHHHHHHHTTCSTSE
T ss_pred CcEEEEeeC-CCCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHHHhHhhcCCCeee
Confidence 577888887 56999999999876543 232 357899999992 2478899999986533331 1
Q ss_pred CCCceeEEec-CCcEEEEEEEEEeeeEEEE
Q 001065 921 SPPAQAIELG-SGESREVIFQATRVAYSAT 949 (1167)
Q Consensus 921 ~p~~~~i~v~-~G~~~~v~~~~~r~~~s~~ 949 (1167)
.--...|.|+ ++++-+|-+-..+.+||.|
T Consensus 81 p~V~I~F~v~d~~~HYHvPLLlSP~gYSTY 110 (112)
T PF00576_consen 81 PEVEIRFTVKDPQQHYHVPLLLSPFGYSTY 110 (112)
T ss_dssp SEEEEEEEESTTTSEEEEEEEEETTEEEEE
T ss_pred ecceEEEEECCCCCcEEEEEEecCceeeEE
Confidence 1235668888 4588899999999999875
No 92
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=90.73 E-value=0.54 Score=46.29 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=40.9
Q ss_pred EeeEEEe--CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEE--E--cccCCccEEEEEE
Q 001065 223 IRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFM--F--KSVPCGQYELVPH 291 (1167)
Q Consensus 223 isG~V~~--~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~--f--~~LppG~Y~v~~~ 291 (1167)
|+=.|.+ .|.|.+|+.|.|+..+. ......+.+.+||+|||.. + ..+.+|.|+|.+.
T Consensus 9 ittHVLDt~~G~PAaGV~V~L~~~~~------------~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~ 71 (121)
T cd05821 9 LMVKVLDAVRGSPAANVAVKVFKKTA------------DGSWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFD 71 (121)
T ss_pred cEEEEEECCCCccCCCCEEEEEEecC------------CCceEEEEEEEECCCCCCCCccCccccCCeeEEEEEe
Confidence 3334554 49999999999987520 0112457899999999995 2 3456899999984
No 93
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=90.55 E-value=0.5 Score=45.99 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=41.4
Q ss_pred EEEEEEeC-CCCceeceEEEE---cc--e--ee--eEeCCCceEEE----CcCCCccEEEEEEeccc
Q 001065 328 VGGRVVDE-NDMGVEGVKILV---DG--H--ER--SITDRDGYYKL----DQVTSNRYTIEAVKVHY 380 (1167)
Q Consensus 328 V~G~V~d~-~G~pl~Ga~V~l---~G--~--~~--~~TD~dG~y~~----~~L~pG~Y~I~~~~~~y 380 (1167)
|+=.|+|. .|.|.+|+.|.| ++ . .+ ++||+||+..- +.+.+|.|+|++....|
T Consensus 3 lStHVLDt~~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~~Y 69 (113)
T cd05469 3 LMVKVLDAVRGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFDTKSY 69 (113)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccceEEEEEEehHHh
Confidence 44578886 799999999999 32 2 22 58999999852 46788999999988777
No 94
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional
Probab=90.27 E-value=4.2 Score=53.21 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=86.9
Q ss_pred ceeecCCceEEEecCCCcceE---Eee--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-cc
Q 001065 890 NSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 963 (1167)
Q Consensus 890 n~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv 963 (1167)
...||..|...+.+|.|=+.- +-+ +..+.+++-+.+.|.-.+|.-..+.|...+.. .+.=++..-+|+|+| |+
T Consensus 668 ~~~Td~~G~avvp~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~g~-~~ll~l~~~~G~~lPfGa 746 (814)
T PRK15235 668 GVRTDFRGYTISSYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKAVYKTSVGT-NALIRITRTNGKPLALGT 746 (814)
T ss_pred CCEECCCCeEEeCCCCCceeceEEecccCCCCCeEecccEEEEEecCCcEEEEEEEEeeee-EEEEEEECCCCCcCCCce
Confidence 368999999999999985544 333 24678888889999999999999999887654 566778899999998 77
Q ss_pred EEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 964 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 964 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
.|.+.++++...+......+|...|+||.|.....|+.
T Consensus 747 ~V~~~~~~g~~~~~g~Vg~~G~vyl~gl~~~~~L~v~w 784 (814)
T PRK15235 747 VLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIASW 784 (814)
T ss_pred EEEecCCCCceeeeEEEcCCCEEEEEcCCCCceEEEEE
Confidence 77765554333456899999999999999987665554
No 95
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=90.25 E-value=0.95 Score=44.13 Aligned_cols=90 Identities=22% Similarity=0.308 Sum_probs=64.9
Q ss_pred EEEEEEEccCCCCCcccceEEEEECCcc--ee--eceeecCCceEEE-----ecCCCcceEEeeccCccc-------cCC
Q 001065 859 QISVRIYSKDDAGEPIPSVLLSLSGDDG--YR--NNSVSWAGGSFHF-----DNLFPGNFYLRPLLKEYA-------FSP 922 (1167)
Q Consensus 859 ~i~~~v~~~~~~~~pl~gvllslsg~~~--~r--~n~~T~~~G~~~f-----~~L~PG~Y~~~~~~key~-------~~p 922 (1167)
.|+.+|.|. ..|.|-+||.+.|...++ ++ ...+||+||++.- ..+.||.|.|+.-..+|= |=|
T Consensus 2 ~lstHVLDt-~~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Yf~~~~~~~F~p 80 (112)
T cd05822 2 PLSTHVLDT-ATGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAYFAARGQESFYP 80 (112)
T ss_pred CceeEEEeC-CCCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhhhhhcCCCccce
Confidence 467788886 559999999998876532 22 3578999999964 468899999997655552 112
Q ss_pred -CceeEEecC-CcEEEEEEEEEeeeEEEE
Q 001065 923 -PAQAIELGS-GESREVIFQATRVAYSAT 949 (1167)
Q Consensus 923 -~~~~i~v~~-G~~~~v~~~~~r~~~s~~ 949 (1167)
-+..|.|.+ .++-+|-+-..+.+||.|
T Consensus 81 ~V~i~F~i~~~~~HYHvPlLlSP~sYSTY 109 (112)
T cd05822 81 EVEVRFTITDPTEHYHVPLLLSPFGYSTY 109 (112)
T ss_pred eeEEEEEECCCCCCEEEeEEecCCceecc
Confidence 345577877 677888888888887754
No 96
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=89.92 E-value=0.72 Score=42.13 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=39.7
Q ss_pred eeEEEeCCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEEE
Q 001065 224 RGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVP 290 (1167)
Q Consensus 224 sG~V~~~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~ 290 (1167)
+|++.-.++|++|+.|.|+..+.. ..-..+..+.||++|+|.+.+=...-+.+.+
T Consensus 1 ~G~L~C~~~P~~~~~V~L~e~d~~------------~~Ddll~~~~Td~~G~F~l~G~~~e~~~i~P 55 (80)
T PF01060_consen 1 KGQLMCGGKPAKNVKVKLWEDDYF------------DPDDLLDETKTDSDGNFELSGSTNEFTTIEP 55 (80)
T ss_pred CeEEEeCCccCCCCEEEEEECCCC------------CCCceeEEEEECCCceEEEEEEccCCccccE
Confidence 377777899999999999998521 0123578899999999999865444333333
No 97
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=89.86 E-value=1.1 Score=42.72 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=37.7
Q ss_pred eEEEEEEEeCCCCceeceEEEE----c-cee-----eeEeCCCceEEE--CcCCCccEEEEEEecc
Q 001065 326 FSVGGRVVDENDMGVEGVKILV----D-GHE-----RSITDRDGYYKL--DQVTSNRYTIEAVKVH 379 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l----~-G~~-----~~~TD~dG~y~~--~~L~pG~Y~I~~~~~~ 379 (1167)
..+.-+|.|.+|+||+|..|.+ + +.. .++||++|.+.+ ..-.+|.|+|++...+
T Consensus 25 ~tltatV~D~~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~ 90 (100)
T PF02369_consen 25 NTLTATVTDANGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDG 90 (100)
T ss_dssp EEEEEEEEETTSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETT
T ss_pred EEEEEEEEcCCCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECC
Confidence 4567789999999999999998 2 221 258999998655 4558899999998776
No 98
>smart00095 TR_THY Transthyretin.
Probab=89.69 E-value=0.77 Score=45.24 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=40.9
Q ss_pred EeeEEEe--CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEE--E--cccCCccEEEEEE
Q 001065 223 IRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFM--F--KSVPCGQYELVPH 291 (1167)
Q Consensus 223 isG~V~~--~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~--f--~~LppG~Y~v~~~ 291 (1167)
|+=.|.+ .|.|.+|+.|.|+..+. ......+.+.+||+|||.. + ..+.+|.|+|.+.
T Consensus 6 lTtHVLDt~~G~PAagv~V~L~~~~~------------~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~ 68 (121)
T smart00095 6 LMVKVLDAVRGSPAVNVAVKVFKKTE------------EGTWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFD 68 (121)
T ss_pred eEEEEEECCCCccCCCCEEEEEEeCC------------CCceEEEEEEecCCCccccCccCcccccceEEEEEEe
Confidence 3334554 49999999999987520 0112457899999999995 2 3567899999984
No 99
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=89.59 E-value=0.51 Score=43.11 Aligned_cols=37 Identities=30% Similarity=0.570 Sum_probs=32.2
Q ss_pred CCCccCccEEEEEeCC----CCeeeEEeecCcceEEEcCCC
Q 001065 956 SGQPKDGVSVEARSES----KGYYEETVTDTSGSYRLRGLH 992 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~----~~~~~~~~Td~~G~~~i~gL~ 992 (1167)
+|+|.+++.|++.+.+ .....+++||++|+|.|.|=.
T Consensus 7 ~~~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~G~~ 47 (80)
T PF01060_consen 7 GGKPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELSGST 47 (80)
T ss_pred CCccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEEEEc
Confidence 6899999999998764 467889999999999999863
No 100
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=88.76 E-value=0.8 Score=44.26 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=42.6
Q ss_pred EEEEEEEeC-CCCceeceEEEE---ccee---e--eEeCCCceEE-----ECcCCCccEEEEEEeccc
Q 001065 327 SVGGRVVDE-NDMGVEGVKILV---DGHE---R--SITDRDGYYK-----LDQVTSNRYTIEAVKVHY 380 (1167)
Q Consensus 327 sV~G~V~d~-~G~pl~Ga~V~l---~G~~---~--~~TD~dG~y~-----~~~L~pG~Y~I~~~~~~y 380 (1167)
.++=.|+|. .|+|-+|++|.| +|.. + +.||+||+.. -+.+.+|.|.+++....|
T Consensus 10 ~LTTHVLDta~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdY 77 (124)
T COG2351 10 RLTTHVLDTASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDY 77 (124)
T ss_pred eeeeeeeecccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchh
Confidence 456678886 799999999998 4432 2 4899999977 345688999999998877
No 101
>COG3188 FimD P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.44 E-value=5.1 Score=52.37 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=87.2
Q ss_pred eeecCCceEEEecCCCcceE---Eee--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccE
Q 001065 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1167)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1167)
..||..|...+..|.|=++- |-+ +.++.++.-+.+.+...+|.-..+.|... ..+.+.-+++.-+|+|+| |+.
T Consensus 694 ~~Td~~G~avvP~lspY~~n~v~lD~~~Lp~dvel~~~~~~v~Pt~GAvv~~~F~t~-~g~~~li~l~~~dG~~lPfGa~ 772 (835)
T COG3188 694 VRTDRRGYAVVPYLTPYRENRVSLDPNNLPDDVELENTVQNVVPTEGAVVLADFDTR-IGYRALITLRRADGSPLPFGAE 772 (835)
T ss_pred cEEcCCCcEeccCcccceeceEEEccccCCCceEecccEEEEEEcCCeEEEEEEeee-ceeEEEEEEECCCCCcCCCceE
Confidence 68999999999999985554 222 35789999999999999999999988766 888899999999999999 777
Q ss_pred EEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
|.....+. .....+.+|+..|+||.++..-.|+-
T Consensus 773 v~~~~~~~---~~g~Vg~~G~vyl~gl~~~~~L~V~w 806 (835)
T COG3188 773 VTDEGGGQ---NVGIVGDDGQVYLRGLPPKGRLLVRW 806 (835)
T ss_pred EEECCCce---EEEEEecCCeEEEecCCCCCeEEEEE
Confidence 76553322 67889999999999999998544444
No 102
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=88.37 E-value=2 Score=41.02 Aligned_cols=62 Identities=27% Similarity=0.284 Sum_probs=39.0
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEE--EeCCCcEEE---EEEeCCCceEEEc--cccCceEEEEEEcCCceeE
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVEL--LSHSGDLIS---SVITSSEGSYLFK--NIIPGKYKLRASHPNLSVE 196 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L--~~~~g~~i~---~ttTd~~G~f~f~--~l~pG~Y~l~~~~~g~~~~ 196 (1167)
.+.-+|.+. ++.|++|..|.+ ....+.... ..+||++|.+.+. .-.+|.|.|.++-.+....
T Consensus 26 tltatV~D~--------~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~~~~ 94 (100)
T PF02369_consen 26 TLTATVTDA--------NGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGGSTS 94 (100)
T ss_dssp EEEEEEEET--------TSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTEEEE
T ss_pred EEEEEEEcC--------CCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCccee
Confidence 355577765 368999999998 343343322 4799999998665 4478999999987765543
No 103
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=88.14 E-value=1.4 Score=46.95 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=44.5
Q ss_pred eEEeeEEEe--CCCceeceEEEEEECCCCcccCCCCCCC-c-----ccccc-eeeEEEeCCCCeEEEcccCCccEE
Q 001065 221 YEIRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGN-A-----LGERK-ALCHAVSDADGKFMFKSVPCGQYE 287 (1167)
Q Consensus 221 ~~isG~V~~--~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~-~-----~~~g~-~~~~~~TD~~G~f~f~~LppG~Y~ 287 (1167)
..+.|+|.+ .++||+||.|.++..+.. ++-.+... . +.+.. ......||++|+|+|..+-||-|.
T Consensus 27 l~l~g~V~D~~~c~Pv~~a~VdiWh~da~--G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 27 LTLDLQVVDVATCCPPPNAAVDIWHCDAT--GVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEEEeCCCCccCCCeEEEEecCCCC--CCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 357889886 379999999999986532 11111111 0 01112 245689999999999999999995
No 104
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=87.48 E-value=0.89 Score=48.51 Aligned_cols=54 Identities=30% Similarity=0.377 Sum_probs=41.4
Q ss_pred cEEEEEEEeccCCccccCCCCCCcceEEEEEeCC--C--------c-----------EEEEEEeCCCceEEEccccCceE
Q 001065 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G--------D-----------LISSVITSSEGSYLFKNIIPGKY 184 (1167)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~--g--------~-----------~i~~ttTd~~G~f~f~~l~pG~Y 184 (1167)
+.+.|+|.+.. +..|++||.|.++..+ | . .-....||++|+|+|.-+.||.|
T Consensus 27 l~l~g~V~D~~-------~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y 99 (188)
T cd03457 27 LTLDLQVVDVA-------TCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWY 99 (188)
T ss_pred EEEEEEEEeCC-------CCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCC
Confidence 35688998742 3589999999999654 2 0 12357899999999999999999
Q ss_pred EE
Q 001065 185 KL 186 (1167)
Q Consensus 185 ~l 186 (1167)
.-
T Consensus 100 ~g 101 (188)
T cd03457 100 PG 101 (188)
T ss_pred CC
Confidence 63
No 105
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=87.47 E-value=38 Score=36.21 Aligned_cols=125 Identities=17% Similarity=0.303 Sum_probs=73.2
Q ss_pred cceEEEEEeCCCcE-EE-eEEecCCc-EEEeCCCC----Cc---cEEEEEEcCCCcccCCceEEEEEcCCCcCCcceeeE
Q 001065 52 SHVTVELRTLDGLV-KE-STQCAPNG-YYFIPVYD----KG---SFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINF 121 (1167)
Q Consensus 52 sgv~v~L~~~~G~~-~~-~t~t~~nG-~y~~~~l~----~G---~Y~l~~~~P~G~~~~p~~~~v~Vd~~~~s~~~dinf 121 (1167)
+-|+|+|+ .+|.. .. .+.+++|+ .|.|..|+ .| .|+|+...-+||. ..+++. .|.-
T Consensus 23 ~sI~v~L~-~ng~~~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V~~Y~-------~~v~g~------tITN 88 (187)
T cd00222 23 AKISVQLL-ANGEKYVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQVPDYE-------TPIIGE------TITN 88 (187)
T ss_pred CEEEEEEE-eCCeeeeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecCCCcE-------EEeccc------EEEE
Confidence 57899999 45544 22 23344466 46666655 45 6999666666665 233332 2222
Q ss_pred EEe---CcEEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEE--EEeC-CCceEEEccccCc------eEEEEEE
Q 001065 122 RFT---GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISS--VITS-SEGSYLFKNIIPG------KYKLRAS 189 (1167)
Q Consensus 122 ~~~---g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~--ttTd-~~G~f~f~~l~pG------~Y~l~~~ 189 (1167)
... -..|+++-.-. |+ ..+..+.-++|+|+.. |..... ..+. .+=.|.|.+||-. .|+|.+.
T Consensus 89 t~~~~~~t~i~v~K~W~-d~----~~~~rP~sI~V~L~ad-G~~~~~~~~l~~~n~W~~tf~~Lp~y~~Gk~i~YtV~E~ 162 (187)
T cd00222 89 KYINKETTSFSGKKIWK-ND----TAGQRPEEIQVQLLQD-GQATGKTKIVTKSNDWTYTFKDLPKYDTGNEYKYSVEEV 162 (187)
T ss_pred eecCCceEEEEEEEEEc-CC----CCCCCCceEEEEEEeC-CEEcceEEEeecCCCcEEEecCCccccCCCEEeEEEEEe
Confidence 211 24556554443 21 1245667799999874 544322 2333 4568999999886 7999885
Q ss_pred --cCCceeE
Q 001065 190 --HPNLSVE 196 (1167)
Q Consensus 190 --~~g~~~~ 196 (1167)
.+||...
T Consensus 163 ~v~~GY~~~ 171 (187)
T cd00222 163 TVVDGYKTT 171 (187)
T ss_pred cCCCCcEeE
Confidence 3688755
No 106
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=86.97 E-value=2.2 Score=39.97 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=41.6
Q ss_pred EEEEEEEeCCCCceeceEEEE--cce-------eeeEeCCCceEEE--CcCCCccEEEEEEecccc
Q 001065 327 SVGGRVVDENDMGVEGVKILV--DGH-------ERSITDRDGYYKL--DQVTSNRYTIEAVKVHYK 381 (1167)
Q Consensus 327 sV~G~V~d~~G~pl~Ga~V~l--~G~-------~~~~TD~dG~y~~--~~L~pG~Y~I~~~~~~y~ 381 (1167)
.|.-+|+|.+|.|++++.|.+ +|. ....||.+|+..+ ..-.+|.|+|+++.+++.
T Consensus 21 ~i~v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~ 86 (92)
T smart00634 21 TLTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGS 86 (92)
T ss_pred EEEEEEECCCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCCc
Confidence 466689999999999988877 332 1248999998655 344679999999987753
No 107
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=85.20 E-value=2.2 Score=41.15 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=34.1
Q ss_pred cccceEEEEEeCCCcEEEeEEecC-Cc-E--EEeCCCCCccEEEEEEcCCC-cc
Q 001065 50 DYSHVTVELRTLDGLVKESTQCAP-NG-Y--YFIPVYDKGSFVIKVNGPEG-WS 98 (1167)
Q Consensus 50 ~~sgv~v~L~~~~G~~~~~t~t~~-nG-~--y~~~~l~~G~Y~l~~~~P~G-~~ 98 (1167)
++..|+|++.|..|.++++-.... .+ . +.++.+++|.|.|+++...| |.
T Consensus 46 ~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g~~l 99 (106)
T PF11589_consen 46 PIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNGTYL 99 (106)
T ss_dssp --SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC-EE
T ss_pred CCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCCCEE
Confidence 566899999998999998865443 34 3 33788999999999999987 54
No 108
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.00 E-value=98 Score=37.37 Aligned_cols=80 Identities=20% Similarity=0.386 Sum_probs=53.7
Q ss_pred eeeEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCc-cccCCCceeEEecCCcE
Q 001065 856 KLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKE-YAFSPPAQAIELGSGES 934 (1167)
Q Consensus 856 ~l~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~ke-y~~~p~~~~i~v~~G~~ 934 (1167)
+.++.-+.+.|++ |++.+-+++..-. ++ .-|+..|..-+ +..||.|-+.-..|. |.+ ....+.+.+|.+
T Consensus 185 ~~a~~~l~~vd~~--G~gv~~~~v~~g~-e~----~ets~~g~~~~-e~t~g~y~~~i~~~g~ye~--~~~av~l~d~~t 254 (513)
T COG1470 185 SKAQSKLRLVDDD--GAGVPKALVKDGN-ES----FETSSKGNLEV-EITPGKYVVLIAKKGIYEK--KKRAVKLNDGET 254 (513)
T ss_pred CcceEEEEEEccC--CCccchheeecCc-ee----EEeecccceeE-EecCcceEEEeccccceec--ceEEEEcCCCcc
Confidence 3455566777765 7888877665322 22 34666777666 789999965544454 664 588899999999
Q ss_pred EEEEEEEEeee
Q 001065 935 REVIFQATRVA 945 (1167)
Q Consensus 935 ~~v~~~~~r~~ 945 (1167)
..+.+.-.+..
T Consensus 255 ~dLkls~~~k~ 265 (513)
T COG1470 255 KDLKLSVTEKK 265 (513)
T ss_pred cceeEEEEecc
Confidence 87766666653
No 109
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=84.50 E-value=2.5 Score=40.87 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=44.5
Q ss_pred EEEEEEEeCCCCceeceEEEE-c------------ceeeeEeCCCceEEECcCCCccEEEEEEecc
Q 001065 327 SVGGRVVDENDMGVEGVKILV-D------------GHERSITDRDGYYKLDQVTSNRYTIEAVKVH 379 (1167)
Q Consensus 327 sV~G~V~d~~G~pl~Ga~V~l-~------------G~~~~~TD~dG~y~~~~L~pG~Y~I~~~~~~ 379 (1167)
.|+=.|.+.+|+|+.|++|+| . |..+..||.+|.+...+..-|+|.|-....+
T Consensus 43 pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~n~e 108 (131)
T PF10794_consen 43 PVTFHVENAEGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLPNGE 108 (131)
T ss_pred cEEEEEecCCCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceEEEEEcCCC
Confidence 455578899999999999998 1 2334699999999999999999999887765
No 110
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional
Probab=84.36 E-value=15 Score=48.40 Aligned_cols=108 Identities=11% Similarity=0.043 Sum_probs=85.0
Q ss_pred eeecCCceEEEecCCCcceEEe---e--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccE
Q 001065 891 SVSWAGGSFHFDNLFPGNFYLR---P--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1167)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~~~---~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1167)
..||..|...+.+|.|=+.-=. + +..+-+++-+.+.|...+|.-..+.|...+.. .+.=+|..-+|+|+| |+.
T Consensus 698 ~~Td~~G~AvVP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~v~F~~~~g~-~~ll~l~~~~G~~lP~Ga~ 776 (842)
T PRK15207 698 VEVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPTRGAIVRARFDTRVGY-RVLMSLKQANGNAVPFGAT 776 (842)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEEeeee-EEEEEEEcCCCCcCCccEE
Confidence 5899999999999998555422 3 24578888888999999999999999877764 567788899999999 888
Q ss_pred EEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
|.+.+.++ ........+|...|+||.+.....|+.
T Consensus 777 V~~~~~~~--~~~g~Vg~~G~vyl~gl~~~~~l~v~w 811 (842)
T PRK15207 777 ATLIDTTK--EASSIVGEEGQLYISGMPEEGELQVSW 811 (842)
T ss_pred EEecCCCC--ceEEEECCCCEEEEEcCCCCceEEEEE
Confidence 87765442 244789999999999999886655544
No 111
>PRK15294 putative fimbrial outer membrane usher protein SthC; Provisional
Probab=83.80 E-value=13 Score=49.00 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=84.6
Q ss_pred eeecCCceEEEecCCCcceE---Eee--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccE
Q 001065 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1167)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1167)
..||..|...+.+|.|=+.- |-+ +..+-+++-+.+.+.-.+|.-..+.|..++.. .+.=+++.-+|+|+| |+.
T Consensus 701 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~-~~l~~l~~~~G~~lPfGa~ 779 (845)
T PRK15294 701 VDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRAEYKTNIGY-KALMVLTRINNLPVPFGAT 779 (845)
T ss_pred CEECCCCeEEeCCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEEEEEEeeee-EEEEEEECCCCCcCCceEE
Confidence 58999999999999884433 333 24678888889999999999999999888776 677778889999998 787
Q ss_pred EEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
|...+.++ .+......+|...|+||.|.....|+.
T Consensus 780 V~~~~~~g--~~~g~Vg~~G~vyl~gl~~~~~L~v~w 814 (845)
T PRK15294 780 VSSLTKPD--NHSSFVGDAGQAWLTGLEKQGRLLVKW 814 (845)
T ss_pred EEccCCCC--ceEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 76443222 255789999999999999887666554
No 112
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=83.72 E-value=3.7 Score=45.25 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=47.0
Q ss_pred eCcEEEEEEEeccCCccccCCCCCCcceEEEEE-------e---CCC---cEEEEEEeCCCceEEEccccCceEEEEEEc
Q 001065 124 TGFTLLGRVVGAIGGESCLDKGGGPSNVNVELL-------S---HSG---DLISSVITSSEGSYLFKNIIPGKYKLRASH 190 (1167)
Q Consensus 124 ~g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~-------~---~~g---~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~ 190 (1167)
.|--+.|+|+.. |.|++|++|.+. + ..+ .......||++|.|.|-.+..|.+.+.+.|
T Consensus 170 ~ge~f~~~vl~~---------GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r~G~W~~~~~~ 240 (264)
T COG5266 170 VGEVFRGKVLDN---------GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLRAGVWGFAVEH 240 (264)
T ss_pred cCCeEEEEEEEC---------CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEccCceEEEEeec
Confidence 355678899874 699999999987 1 112 233578899999999999999999999877
Q ss_pred CC
Q 001065 191 PN 192 (1167)
Q Consensus 191 ~g 192 (1167)
.+
T Consensus 241 ~~ 242 (264)
T COG5266 241 KT 242 (264)
T ss_pred cC
Confidence 54
No 113
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=82.68 E-value=2.7 Score=36.35 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=18.1
Q ss_pred ecCCC-cEEEcccCCccEEEEEEee
Q 001065 532 TDDSD-QFLFRDVLPGKYRLEVKRT 555 (1167)
Q Consensus 532 Td~~G-~f~f~~L~PG~Y~v~~~~~ 555 (1167)
..... ++.|.+|+||+|+|.+...
T Consensus 24 ~~~~~~~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 24 LGSYSNSISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp ESSTS-EEEEES--SEEEEEEEEEE
T ss_pred CCCCcEEEEEEeCCCEEEEEEEEEE
Confidence 34444 9999999999999999865
No 114
>PRK15223 pilin outer membrane usher protein SafC; Provisional
Probab=82.31 E-value=17 Score=47.84 Aligned_cols=108 Identities=19% Similarity=0.141 Sum_probs=83.1
Q ss_pred ceeecCCceEEEecCCCcceE---Eee--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-cc
Q 001065 890 NSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 963 (1167)
Q Consensus 890 n~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv 963 (1167)
+..||..|...+.+|.|=+.- |-+ +..+-+++-+.+.|.-.+|.-..+.|...+.. .+.=++..-+|+|+| |+
T Consensus 695 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~-~~ll~l~~~~G~~lP~Ga 773 (836)
T PRK15223 695 GVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGA-RALMTLKREDGSAIPFGA 773 (836)
T ss_pred CCEECCCCeEEeCCCCCceeceEEECCCCCCCCEEecCcEEEEEecCCcEEEEEEEEeeeE-EEEEEEECCCCCcCCCCe
Confidence 468999999999999985443 323 24577888888999999999999999877664 567788999999998 77
Q ss_pred EEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 964 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 964 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
.|.+ +.++ ........+|...|+||.|.....|+.
T Consensus 774 ~v~~-~~~g--~~~g~Vg~~G~vyl~g~~~~~~l~v~w 808 (836)
T PRK15223 774 QVTV-NGQD--GSAALVDTDSQVYLTGLADKGELTVKW 808 (836)
T ss_pred EEEe-cCCC--ceEEEECCCCEEEEEccCCCceEEEEE
Confidence 6655 3222 145889999999999999887655544
No 115
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=81.40 E-value=2.9 Score=36.13 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=17.6
Q ss_pred eCCCC-eEEEcccCCccEEEEEEEec
Q 001065 270 SDADG-KFMFKSVPCGQYELVPHYKG 294 (1167)
Q Consensus 270 TD~~G-~f~f~~LppG~Y~v~~~~~~ 294 (1167)
..... ++.|.+||||+|+|.+....
T Consensus 24 ~~~~~~~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 24 LGSYSNSISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp ESSTS-EEEEES--SEEEEEEEEEEE
T ss_pred CCCCcEEEEEEeCCCEEEEEEEEEEC
Confidence 34444 99999999999999986443
No 116
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional
Probab=81.29 E-value=22 Score=47.00 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=81.4
Q ss_pred eeecCCceEEEecCCCcceEEe---e--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccE
Q 001065 891 SVSWAGGSFHFDNLFPGNFYLR---P--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1167)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~~~---~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1167)
..||..|...+.+|.|=+.--. + +..+.+++-+.+.+.-.+|.-..+.|...+.. .+.=+|..-+|+|+| |+.
T Consensus 707 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~~F~~~~g~-~~ll~l~~~~G~~lP~Ga~ 785 (848)
T PRK15298 707 VATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGY-RVLLTLTRSNGEPVPFGAT 785 (848)
T ss_pred CEECCCCeEEeCCCCccceeeEEECCCCCCCCeEecccEEEecccCCeEEEEEEEEEeeE-EEEEEEECCCCCcCCCCcE
Confidence 5899999999999998554433 3 24577788888889999999999998777654 566678889999998 777
Q ss_pred EEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
|.+.+.+. ........+|...|+||.|.....|+.
T Consensus 786 v~~~~~~~--~~~g~Vg~~G~vyl~g~~~~~~l~v~w 820 (848)
T PRK15298 786 ASVDGQDA--NLASIVGDKGQVFLSGLPEEGLLLVNW 820 (848)
T ss_pred EEEcCCCC--eeEEEECCCCEEEEEecCCCceEEEEE
Confidence 76532211 234789999999999998876555443
No 117
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=80.69 E-value=2.2 Score=40.42 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=29.1
Q ss_pred CCCCccCccEEEEEeCC----CCeeeEEeecCcceEEEc
Q 001065 955 LSGQPKDGVSVEARSES----KGYYEETVTDTSGSYRLR 989 (1167)
Q Consensus 955 ~~g~p~~gv~v~~~~~~----~~~~~~~~Td~~G~~~i~ 989 (1167)
....|++||.|.+.-.+ .....+++||++|.|+|.
T Consensus 16 ~~~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~ 54 (97)
T PF01190_consen 16 RAAKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIE 54 (97)
T ss_pred ccCccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEE
Confidence 34679999999999554 246889999999999997
No 118
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=80.54 E-value=86 Score=33.57 Aligned_cols=119 Identities=20% Similarity=0.425 Sum_probs=69.4
Q ss_pred CCCCcceEEEEEeCCCcE-EE-EEEeCCCc-eEEEcccc----Cc---eEEEEEEc-CCceeEeecceEEEEccCCeeEe
Q 001065 145 GGGPSNVNVELLSHSGDL-IS-SVITSSEG-SYLFKNII----PG---KYKLRASH-PNLSVEVRGSTEVELGFENGEVD 213 (1167)
Q Consensus 145 ~~plaGv~V~L~~~~g~~-i~-~ttTd~~G-~f~f~~l~----pG---~Y~l~~~~-~g~~~~~~~~~~V~v~~~~~~~~ 213 (1167)
+.-+.-++|.|++. |.. .. -..+.+++ .|.|.+|| -| .|.|.+.. ++|...+.+. . +.
T Consensus 19 ~~RP~sI~v~L~~n-g~~~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V~~Y~~~v~g~-t---------IT 87 (187)
T cd00222 19 KKRPAKISVQLLAN-GEKYVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQVPDYETPIIGE-T---------IT 87 (187)
T ss_pred CCCCCEEEEEEEeC-CeeeeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecCCCcEEEeccc-E---------EE
Confidence 45667899999864 432 22 33455555 68999998 46 69998754 7777553221 1 11
Q ss_pred eeeec-cceEEeeE-EEeC---CCceeceEEEEEECCCCcccCCCCCCCccccccee--eEEEe-CCCCeEEEcccCCc-
Q 001065 214 DIFFA-PGYEIRGL-VVAQ---GNPILGVHIYLYSDDVGKVDCPQGSGNALGERKAL--CHAVS-DADGKFMFKSVPCG- 284 (1167)
Q Consensus 214 ~~l~~-~G~~isG~-V~~~---g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~--~~~~T-D~~G~f~f~~LppG- 284 (1167)
+.... .-.++++. +..+ +....-++|.|+... ... ....+ +.+=.|.|.+||..
T Consensus 88 Nt~~~~~~t~i~v~K~W~d~~~~~rP~sI~V~L~adG-----------------~~~~~~~~l~~~n~W~~tf~~Lp~y~ 150 (187)
T cd00222 88 NKYINKETTSFSGKKIWKNDTAGQRPEEIQVQLLQDG-----------------QATGKTKIVTKSNDWTYTFKDLPKYD 150 (187)
T ss_pred EeecCCceEEEEEEEEEcCCCCCCCCceEEEEEEeCC-----------------EEcceEEEeecCCCcEEEecCCcccc
Confidence 22111 12345554 3333 333456999999862 111 12233 34568999999976
Q ss_pred -----cEEEEEE
Q 001065 285 -----QYELVPH 291 (1167)
Q Consensus 285 -----~Y~v~~~ 291 (1167)
.|+|.+.
T Consensus 151 ~Gk~i~YtV~E~ 162 (187)
T cd00222 151 TGNEYKYSVEEV 162 (187)
T ss_pred CCCEEeEEEEEe
Confidence 5788774
No 119
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=80.32 E-value=6.5 Score=43.38 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=48.3
Q ss_pred ceEEeeEEEeCCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEEEEEecC
Q 001065 220 GYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGE 295 (1167)
Q Consensus 220 G~~isG~V~~~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~~ 295 (1167)
|-.+.|+|+.+|+||+||+|.+.-..-...+ +...............||++|+|.|--+..|-+.+.+.+..+
T Consensus 171 ge~f~~~vl~~GkPv~nA~V~v~~~n~~~~d---~~a~~~~~ek~~~~~~TD~kG~~~fip~r~G~W~~~~~~~~~ 243 (264)
T COG5266 171 GEVFRGKVLDNGKPVPNATVEVEFDNIDTKD---NRAKTGNTEKTALVQFTDDKGEVSFIPLRAGVWGFAVEHKTD 243 (264)
T ss_pred CCeEEEEEEECCccCCCcEEEEEEecccccc---cccccCCCCCcceEEEcCCCceEEEEEccCceEEEEeeccCC
Confidence 4457889999999999999998732100000 000001111223567999999999999999999998865443
No 120
>KOG4802 consensus Adhesion-type protein [Extracellular structures]
Probab=80.07 E-value=8.5 Score=44.90 Aligned_cols=111 Identities=13% Similarity=0.245 Sum_probs=62.7
Q ss_pred ecCCceEEEecCCCcceE-EeeccC------ccccCCCceeEEecCC-----cEEEEEEEEEeeeEEEEEEEE---cCCC
Q 001065 893 SWAGGSFHFDNLFPGNFY-LRPLLK------EYAFSPPAQAIELGSG-----ESREVIFQATRVAYSATGTIT---LLSG 957 (1167)
Q Consensus 893 T~~~G~~~f~~L~PG~Y~-~~~~~k------ey~~~p~~~~i~v~~G-----~~~~v~~~~~r~~~s~~G~V~---~~~g 957 (1167)
|.+.-++.|.+++||.+| ||-.++ +|. .++..+-.... ....+.+.|....++..=+|- +.+.
T Consensus 205 t~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs--~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sd 282 (516)
T KOG4802|consen 205 TMEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFS--EPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSD 282 (516)
T ss_pred cCCCceeeeeecCcceeEEEEEeeeecccccccC--CCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCC
Confidence 343348899999999988 554333 333 22222222111 124566667555555554554 3344
Q ss_pred CccCccEEEEEeC-C-------CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCC
Q 001065 958 QPKDGVSVEARSE-S-------KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFG 1008 (1167)
Q Consensus 958 ~p~~gv~v~~~~~-~-------~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~ 1008 (1167)
-|++.-.|.-.+. + ....-+-.|+ ++.|.+|+|+|.|.|++.+..+.|
T Consensus 283 lPv~~Yki~Ws~~v~s~k~~m~tks~~~k~th---q~si~~L~Pns~Y~VevqAi~y~g 338 (516)
T KOG4802|consen 283 LPVEKYKITWSLYVNSAKASMITKSSYVKDTH---QFSIKELLPNSSYYVEVQAISYLG 338 (516)
T ss_pred CcceeeEEEeehhhhhhhhhcccccceeeccc---hhhhhhcCCCCeEEEEEEEEEecc
Confidence 4555555442221 1 1122234455 667999999999999999875544
No 121
>PRK15198 outer membrane usher protein FimD; Provisional
Probab=79.07 E-value=27 Score=46.14 Aligned_cols=105 Identities=17% Similarity=0.110 Sum_probs=79.5
Q ss_pred eeecCCceEEEecCCCcceE---Eeec--cCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccE
Q 001065 891 SVSWAGGSFHFDNLFPGNFY---LRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1167)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~~--~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1167)
..||..|...+.+|.|=+.- |-+. ..+.+++-+.+.|.-.+|.-..+.|..++.. .+.=+++. +|+|+| |+.
T Consensus 715 ~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~nvei~~t~~~vvPt~GAvv~v~F~~~~g~-~~ll~~~~-~G~~lP~Ga~ 792 (860)
T PRK15198 715 VKTDWRGYAVMPYATVYRYNRVALDTNTMGNSTDVENNVSSVVPTQGALVRANFDTRIGV-RALITVTQ-GGKPVPFGAL 792 (860)
T ss_pred CEECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEEeeee-EEEEEEcc-CCCCCCCceE
Confidence 58999999999999874433 3332 4678888889999999999999999886654 44455765 899998 776
Q ss_pred EEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
|. +.++. .......+|...|+||.|.....|+.
T Consensus 793 V~--~~~~~--~~g~Vg~~G~vyl~gl~~~~~l~v~w 825 (860)
T PRK15198 793 VR--ETSSG--ITSMVGDDGQIYLSGLPLSGELLIQW 825 (860)
T ss_pred EE--CCCCc--EEEEECCCCEEEEEcCCCCceEEEEE
Confidence 64 33322 44889999999999999887666554
No 122
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=78.89 E-value=7.2 Score=36.45 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=43.5
Q ss_pred EeeeEEEEEEEccCCCCCcccceEE--EEECCc--cee-eceeecCCceEEEe--cCCCcceEEeeccCccc
Q 001065 855 QKLSQISVRIYSKDDAGEPIPSVLL--SLSGDD--GYR-NNSVSWAGGSFHFD--NLFPGNFYLRPLLKEYA 919 (1167)
Q Consensus 855 ~~l~~i~~~v~~~~~~~~pl~gvll--slsg~~--~~r-~n~~T~~~G~~~f~--~L~PG~Y~~~~~~key~ 919 (1167)
.-+..|.++|.|+. |.|+++..+ +++++. .+. ....||++|+..+. +-.+|.|.+++....+.
T Consensus 17 ~d~~~i~v~v~D~~--Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~ 86 (92)
T smart00634 17 SDAITLTATVTDAN--GNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGS 86 (92)
T ss_pred cccEEEEEEEECCC--CCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCCc
Confidence 34677889999875 899999665 455542 111 23579999987664 55788888887765543
No 123
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=76.96 E-value=20 Score=39.35 Aligned_cols=83 Identities=17% Similarity=0.336 Sum_probs=46.5
Q ss_pred eeEEeceEEEEEEEeC-CCCce----eceEEEE--cc----eee-eEeCCCceEEECcCCCccEEEEEEecc----cccc
Q 001065 320 KFQVTGFSVGGRVVDE-NDMGV----EGVKILV--DG----HER-SITDRDGYYKLDQVTSNRYTIEAVKVH----YKFN 383 (1167)
Q Consensus 320 ~f~~~g~sV~G~V~d~-~G~pl----~Ga~V~l--~G----~~~-~~TD~dG~y~~~~L~pG~Y~I~~~~~~----y~~~ 383 (1167)
++..+...++|+|+|. +|+|+ .|+++.| .| ... .....||.|+=..|=.|+|.|...... +..+
T Consensus 16 NYD~P~s~l~G~iiD~~tgE~i~~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~~~d 95 (222)
T PF12866_consen 16 NYDEPDSTLTGRIIDVYTGEPIQTDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVVPVD 95 (222)
T ss_dssp ------EEEEEEEEECCTTEE----STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSCCE-
T ss_pred CCcCCCceEEEEEEEeecCCeeeecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCCCCcccCCCc
Confidence 4655667899999994 55543 4889988 22 122 478899999777999999999995443 2333
Q ss_pred ceeeEEEcCCcceeceEEEEee
Q 001065 384 KLKEYMVLPNMASIADIKAISY 405 (1167)
Q Consensus 384 ~~~~v~v~p~~~~i~dI~~~~~ 405 (1167)
+. .+.+. .....|+.+..+
T Consensus 96 ti-~v~i~--G~t~~d~eVtPY 114 (222)
T PF12866_consen 96 TI-EVDIK--GNTTQDFEVTPY 114 (222)
T ss_dssp -E-EEEES--SCEEEEEEE-BS
T ss_pred cE-EEEec--CceEEeEEeeee
Confidence 33 34444 224456666655
No 124
>PRK15248 fimbrial outer membrane usher protein StbC; Provisional
Probab=76.79 E-value=30 Score=45.72 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=82.5
Q ss_pred eeecCCceEEEecCCCcceE---Eee--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccE
Q 001065 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1167)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1167)
..||..|...+.+|.|=+.- +-+ +..+.+++-+.+.|.-.+|.-..+.|...+.. .+.-+|...+|+|+| |+.
T Consensus 710 ~~Td~~G~avVp~L~pY~~N~i~ID~~~LP~dvel~~t~~~vvP~~GAiv~~~F~~~~g~-~~l~~l~~~dG~~lP~Ga~ 788 (853)
T PRK15248 710 AVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIARVNFATISGK-AVLISVKMPDGGIPPMGAD 788 (853)
T ss_pred CeECCCCeEEeCCCCCceeeeEEECCcCCCCCEEEcccEEeecccCCcEEEEEEEEeece-EEEEEEEcCCCCcCCCceE
Confidence 57999999999999984332 333 35688888889999999999999999877764 677889999999998 776
Q ss_pred EEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
|. +.++ ........+|...|+||.|.....|+.
T Consensus 789 V~--~~~g--~~~g~Vg~~G~vyl~~~~~~~~l~V~w 821 (853)
T PRK15248 789 VF--NGEG--TNIGMVGQSGQIYARIAHPSGSLLVRW 821 (853)
T ss_pred EE--CCCC--cEEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 65 3322 244789999999999999887665555
No 125
>PRK09828 putative fimbrial outer membrane usher protein; Provisional
Probab=76.37 E-value=34 Score=45.36 Aligned_cols=106 Identities=18% Similarity=0.051 Sum_probs=82.9
Q ss_pred eeecCCceEEEecCCCcceE---Eee--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccE
Q 001065 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1167)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1167)
..||..|...+.+|.|=+.- +-+ +..+-+++-+.+.+.-.+|.-..+.|..++.. .+.=++..-+|+|+| |+.
T Consensus 718 ~~Td~~G~avVP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAvv~~~F~~~~g~-~~ll~l~~~~G~~lP~Ga~ 796 (865)
T PRK09828 718 STIDRWGYGVTSALSPYRENRVALDINTLENDVELKSTSAVAVPRQGAVVLADFETDQGR-SAIMNITRSDGKNIPFAAD 796 (865)
T ss_pred ceeCCCCeEEeCCCCCceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEEEEEeecce-EEEEEEECCCCCcCCCceE
Confidence 47999999999999985544 333 24578888888999999999999999887764 566678889999998 776
Q ss_pred EEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
|. +.++ ........+|...|+||.+.....|+.
T Consensus 797 V~--~~~g--~~~g~Vg~~G~vyl~gl~~~~~l~v~w 829 (865)
T PRK09828 797 VY--DEQG--NVIGNVGQGGQAFVRGIEDQGELRIRW 829 (865)
T ss_pred EE--CCCC--cEEEEEeCCCEEEEEcCCCCceEEEEE
Confidence 64 3332 244789999999999999988777666
No 126
>PRK15273 putative fimbrial outer membrane usher protein SteB; Provisional
Probab=75.91 E-value=41 Score=44.64 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=80.8
Q ss_pred eeecCCceEEEecCCCcceE---Eee--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccE
Q 001065 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1167)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1167)
..||..|...+.+|.|=+.- |-+ +..+-+++-+.+.+...+|.-..+.|...+.. .+.=+|..-+|+|+| |+.
T Consensus 683 ~~Td~~G~AvvP~L~pY~~N~i~ID~~~LP~dvei~~t~~~vvPt~GAiv~~~F~~~~g~-~~l~~l~~~dG~~lPfGa~ 761 (881)
T PRK15273 683 TSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGE-KMMAVFRLADGDFPPFGAE 761 (881)
T ss_pred CeECCCCeEEeCCCCcceeeeEEECCcCCCCCEEeccCEEEEEecCCCEEEEEEEEEeee-EEEEEEEccCCCcCCCceE
Confidence 58999999999999984443 333 24578888888999999999888888766654 566678889999998 777
Q ss_pred EEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
|. ++++ ........+|...|+||.|+....|+.
T Consensus 762 V~--~~~g--~~~giVg~~G~vyl~g~~~~~~l~V~w 794 (881)
T PRK15273 762 VK--NERQ--QQLGLVADDGNAWLAGVKAGETLKVFW 794 (881)
T ss_pred EE--cCCC--cEEEEEcCCCEEEEecCCCCceEEEEe
Confidence 65 3322 245789999999999999987655544
No 127
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=75.79 E-value=12 Score=33.17 Aligned_cols=50 Identities=36% Similarity=0.521 Sum_probs=37.6
Q ss_pred CCCccCccEEEEEeCCCC--eeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 956 SGQPKDGVSVEARSESKG--YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~~~--~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.+.++.+..|+....+.. .+........-.|.|.||.|++.|.+++.+..
T Consensus 26 ~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 26 GNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp TSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEE
T ss_pred CCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEe
Confidence 466778888888866532 44444555555999999999999999999753
No 128
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=75.51 E-value=37 Score=44.59 Aligned_cols=105 Identities=17% Similarity=0.078 Sum_probs=81.0
Q ss_pred eeecCCceEEEecCCCcceEEe---e--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccE
Q 001065 891 SVSWAGGSFHFDNLFPGNFYLR---P--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1167)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~~~---~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1167)
..||..|...+.+|.|=+.-=. + +..+.+++-+.+.|.-.+|.-..+.|...+.. .+.=++..-+|+|+| |+.
T Consensus 659 v~Td~~G~AvvP~l~pY~~N~i~id~~~Lp~dvel~~t~~~VvPt~GAvv~v~F~~~~g~-~~l~~l~~~~G~~lPfGa~ 737 (801)
T PRK15304 659 VWTDFWGQAVIPGLTEWRKSRVEVNTNTLPKNMDLANGTKMIKAAHGAVSKVDFSVLNQR-RVMLNVKRADGSPLPKGVS 737 (801)
T ss_pred eEECCCCeEEeCCCCCceeeeEEECccCCCCCEEEccCEEEEEeCCCcEEEEEEEEccce-EEEEEEEccCCCcCCCcEE
Confidence 4799999999999998555432 2 35678888889999999999999999877654 567778889999998 666
Q ss_pred EEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEE
Q 001065 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIK 1000 (1167)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~ 1000 (1167)
|. +.++ ........+|...|+||.|.....|+
T Consensus 738 V~--~~~g--~~~g~Vg~~G~vyl~g~~~~~~l~v~ 769 (801)
T PRK15304 738 IV--DEKG--NYLTSAVDDGRVFLNDIDDIPALYAK 769 (801)
T ss_pred EE--CCCC--cEEEEEeCCCEEEEECCCCCceEEEE
Confidence 54 3332 24467889999999999987655544
No 129
>PRK15284 putative fimbrial outer membrane usher protein StfC; Provisional
Probab=75.15 E-value=42 Score=44.55 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=80.4
Q ss_pred eeecCCceEEEecCCCcceE---Eee--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccE
Q 001065 891 SVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1167)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1167)
..||..|...+.+|.|=+.- +-+ +..+.+++-+.+.|...+|.-..+.|...+.. .+.=++..-+|+|+| |+.
T Consensus 706 v~Td~~G~AvVp~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~-~~l~~l~~~dG~~lPfGa~ 784 (881)
T PRK15284 706 VYTNMFGKAVVADVNNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYRKFAVISGQ-KAMAVLRLRDGSHPPFGAE 784 (881)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCEEEccCEEEEEEcCCcEEEEEEEEeeee-EEEEEEEcCCCCcCCCceE
Confidence 47999999999999985443 333 24577888888889999999888888776554 455578888999998 776
Q ss_pred EEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
|. +.++ ........+|...|+||.|.....|+.
T Consensus 785 V~--~~~g--~~~giVg~~G~vyL~gl~~~~~l~V~w 817 (881)
T PRK15284 785 VK--NDNQ--QQVGLVDDDGNVYLAGVKPGEHMQVFW 817 (881)
T ss_pred EE--cCCC--ceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 65 3222 245889999999999999987666554
No 130
>PRK15213 fimbrial outer membrane usher protein PefC; Provisional
Probab=74.93 E-value=45 Score=43.82 Aligned_cols=104 Identities=12% Similarity=0.036 Sum_probs=80.6
Q ss_pred ceeecCCceEEEecCCCcceE---Eee--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-cc
Q 001065 890 NSVSWAGGSFHFDNLFPGNFY---LRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 963 (1167)
Q Consensus 890 n~~T~~~G~~~f~~L~PG~Y~---~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv 963 (1167)
...||..|...+. |.|=+.- +-+ +..+.+++-+.+.|.-.+|.-..+.|..++.. .+.=++...+|+|+| |+
T Consensus 665 ~~~Td~~G~alVP-l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~gAvv~~~F~~~~g~-~~ll~l~~~~G~~lP~Ga 742 (797)
T PRK15213 665 SGPTDSKGNTVVP-LSSYDLNTVTVNAENLPLNTELTTTSQNVVPTDKAVVYREFKALKVL-RYILRVKQKDGRFVPGGS 742 (797)
T ss_pred CcEECCCCeEEEe-CCCceeeeEEECccCCCCCEEecccEEEEEecCCcEEEEEEEEEeee-EEEEEEEccCCCcCCCCe
Confidence 4689999999998 8874433 323 24678888888999999999999999887764 667789999999998 66
Q ss_pred EEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEE
Q 001065 964 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVI 999 (1167)
Q Consensus 964 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v 999 (1167)
.|. +.++ ........+|...|+||.+.....|
T Consensus 743 ~v~--~~~g--~~~g~Vg~~G~vyl~gl~~~~~l~v 774 (797)
T PRK15213 743 WAR--NEQG--TPLGFVANNGVLLMNLLDAPGDISV 774 (797)
T ss_pred EEE--CCCC--cEEEEEcCCCEEEEEcCCCCCEEEE
Confidence 663 3332 2457899999999999998766665
No 131
>PRK15255 fimbrial outer membrane usher protein StdB; Provisional
Probab=74.68 E-value=36 Score=44.93 Aligned_cols=107 Identities=16% Similarity=0.086 Sum_probs=79.6
Q ss_pred eecCCceEEEecCCCcceE---Eeec--cCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccEE
Q 001065 892 VSWAGGSFHFDNLFPGNFY---LRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVSV 965 (1167)
Q Consensus 892 ~T~~~G~~~f~~L~PG~Y~---~~~~--~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~v 965 (1167)
.||..|...+.+|.|=+.- +-+. ..+-+++-+.+.|...+|....+.|...|.. .+.=+|+.-+|+|+| |+.|
T Consensus 690 ~Td~~G~avvP~l~pY~~N~i~ID~~~LP~dvei~~t~~~VvP~~GAvv~~~F~~~~g~-~~l~~l~~~~G~~lP~Ga~V 768 (829)
T PRK15255 690 VTNRFGVGVVSAGSSYRRSDISVDVAALPEDVDVSSSVISQVLTEGAVGYRKIDASQGE-QVLGHIRLADGASPPFGALV 768 (829)
T ss_pred ccCCCCEEEeCCCCCceeeeEEECCcCCCCCEEecccEEEEEecCCCEEEEEEEEecce-EEEEEEEcCCCCcCCCcEEE
Confidence 5999999999999985544 3332 4578888888989999998888888877765 556678999999998 7776
Q ss_pred EEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEE
Q 001065 966 EARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVV 1002 (1167)
Q Consensus 966 ~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~ 1002 (1167)
.. ++++ ........+|...|+||.|...-.+.++
T Consensus 769 ~~-~~~g--~~~g~Vg~~G~vyl~gl~~~~~~~l~v~ 802 (829)
T PRK15255 769 VS-GKTG--RTAGMVGDDGLAYLTGLSGEDRRTLNVS 802 (829)
T ss_pred Ec-CCCC--ceeEEEcCCCEEEEECCCCCCCeeEEEE
Confidence 52 2222 2447899999999999986443344454
No 132
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism]
Probab=71.67 E-value=28 Score=33.93 Aligned_cols=91 Identities=20% Similarity=0.364 Sum_probs=62.9
Q ss_pred eEEEEEEEccCCCCCcccceEE---EEECCcceee--ceeecCCceEEEe----cCCCcceEEeeccCcc-------ccC
Q 001065 858 SQISVRIYSKDDAGEPIPSVLL---SLSGDDGYRN--NSVSWAGGSFHFD----NLFPGNFYLRPLLKEY-------AFS 921 (1167)
Q Consensus 858 ~~i~~~v~~~~~~~~pl~gvll---slsg~~~~r~--n~~T~~~G~~~f~----~L~PG~Y~~~~~~key-------~~~ 921 (1167)
..|..+|.|. ..|.|-.||.+ .+.+.+.+-. ...|++||+.... -|.||.|.++-.-+-| .|-
T Consensus 21 ~~itahVLd~-s~GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y~~a~gv~sFy 99 (132)
T KOG3006|consen 21 PPITAHVLDI-SRGSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPYYKALGVESFY 99 (132)
T ss_pred CCcEeEEeec-ccCCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEecccccccCCccccc
Confidence 5567777776 45899988865 4555544332 4579999998743 5789999998765555 333
Q ss_pred C-CceeEEecCC-cEEEEEEEEEeeeEEEE
Q 001065 922 P-PAQAIELGSG-ESREVIFQATRVAYSAT 949 (1167)
Q Consensus 922 p-~~~~i~v~~G-~~~~v~~~~~r~~~s~~ 949 (1167)
| -+..|++.++ |.-+|-+...+-.||-+
T Consensus 100 pyvevvf~in~s~qhyhvpllLsPygySTy 129 (132)
T KOG3006|consen 100 PYVEVVFNINDSTQHYHVPLLLSPYGYSTY 129 (132)
T ss_pred ccEEEEEEeccCcceEEEeEEecccceeee
Confidence 3 3566899998 66677777777777643
No 133
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=71.25 E-value=11 Score=35.58 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=30.5
Q ss_pred CCCCcceEEEEEeCC--C--cEEEEEEeCCCceEEEccccCceEE
Q 001065 145 GGGPSNVNVELLSHS--G--DLISSVITSSEGSYLFKNIIPGKYK 185 (1167)
Q Consensus 145 ~~plaGv~V~L~~~~--g--~~i~~ttTd~~G~f~f~~l~pG~Y~ 185 (1167)
..|++||+|.|.=.+ + ......+||++|.|.+. |+...+.
T Consensus 18 ~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~-l~~~~~~ 61 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIE-LPSDPGS 61 (97)
T ss_pred CccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEE-ecCcccc
Confidence 579999999998444 2 35678999999999998 6554333
No 134
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=69.59 E-value=17 Score=35.36 Aligned_cols=74 Identities=24% Similarity=0.219 Sum_probs=50.6
Q ss_pred cCCcceeeEEEeCcEEEEEEEeccCCccccCCCCCCcceEEEEEe--CCC-c-----EEEEEEeCCCceEEEccccCceE
Q 001065 113 CNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLS--HSG-D-----LISSVITSSEGSYLFKNIIPGKY 184 (1167)
Q Consensus 113 ~s~~~dinf~~~g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~--~~g-~-----~i~~ttTd~~G~f~f~~l~pG~Y 184 (1167)
|..+.+-++.-....|+=.|.++ .+.|+.|++|.|.. ++. + ...-..||..|.+.-.+..-|+|
T Consensus 29 c~~~~es~~~k~~~pVT~hVen~--------e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y 100 (131)
T PF10794_consen 29 CIANNESAASKVVNPVTFHVENA--------EGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKY 100 (131)
T ss_pred ccccchhhhceecccEEEEEecC--------CCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceE
Confidence 44333333433334455566665 26999999999986 221 1 13457899999999999999999
Q ss_pred EEEEEcCCce
Q 001065 185 KLRASHPNLS 194 (1167)
Q Consensus 185 ~l~~~~~g~~ 194 (1167)
.+.....+-.
T Consensus 101 ~v~l~n~e~~ 110 (131)
T PF10794_consen 101 IVFLPNGETQ 110 (131)
T ss_pred EEEEcCCCce
Confidence 9988766543
No 135
>PRK15217 fimbrial outer membrane usher protein; Provisional
Probab=69.19 E-value=69 Score=42.31 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=81.7
Q ss_pred eceeecCCceEEEecCCCcce---EEee--ccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-c
Q 001065 889 NNSVSWAGGSFHFDNLFPGNF---YLRP--LLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-G 962 (1167)
Q Consensus 889 ~n~~T~~~G~~~f~~L~PG~Y---~~~~--~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-g 962 (1167)
.+..||..|...+.+|.|=+. .+-+ +..+.+++-+.+.|...+|.-..+.|...+.. .+.=++..-+|+|+| |
T Consensus 688 ~~~~Td~~G~AvvP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~~F~~~~g~-~~ll~l~~~~G~~lP~G 766 (826)
T PRK15217 688 KYRTTNRKGVVVYDGLTPYRENHLMLDVSQSDSETELRGNRKIAAPYRGAVVLVNFDTDQRK-PWFIKALRADGQPLTFG 766 (826)
T ss_pred CCCeECCCCEEEeCCCCCceeceEEECCcCCCCCEEecccEEEEEecCCcEEEEEEEEecce-EEEEEEEcCCCCcCCCc
Confidence 346899999999999988433 2333 24678888888999999999999999877764 567778889999998 7
Q ss_pred cEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 963 VSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 963 v~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
+.|. ++++ .+......+|...|+||.+.....|+.
T Consensus 767 a~V~--~~~g--~~~g~Vg~~G~vyl~g~~~~~~l~v~w 801 (826)
T PRK15217 767 YEVN--DIHG--HNIGVVGQGSQLFIRTNEVPPSVKVAI 801 (826)
T ss_pred eEEE--CCCC--cEEEEEcCCCeEEEEcCCCCceEEEEE
Confidence 7665 3332 255789999999999998776544443
No 136
>PRK15193 outer membrane usher protein; Provisional
Probab=69.02 E-value=61 Score=43.05 Aligned_cols=106 Identities=17% Similarity=0.089 Sum_probs=79.2
Q ss_pred ceeecCCceEEEecCCCcce---EEeec--cCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-cc
Q 001065 890 NSVSWAGGSFHFDNLFPGNF---YLRPL--LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GV 963 (1167)
Q Consensus 890 n~~T~~~G~~~f~~L~PG~Y---~~~~~--~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv 963 (1167)
...||..|...+.+|.|=+. .|-+. ..+.+++-+.+.|.-.+|.-..+.|...+..- +.=+++ .+|+|+| |+
T Consensus 734 ~~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~dvel~~t~~~VvPt~GAvv~~~F~~~~g~~-~ll~l~-~~G~plPfGa 811 (876)
T PRK15193 734 GLKTDWRGYAVVPYATSYRENRIALDAASLKDNVDLENAVVNVVPTKGALVLAEFNAHVGAR-ALMTLS-HQGIPLPFGA 811 (876)
T ss_pred CCeECCCCeEEECCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEEEEEEeeeeE-EEEEEc-cCCcCCCCce
Confidence 46899999999999987433 34332 46788888889999999999999998887753 333564 4899998 77
Q ss_pred EEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 964 SVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 964 ~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
.|. ++++ ........+|...|+||.|.....|+.
T Consensus 812 ~V~--~~~g--~~~g~Vg~~G~vyl~gl~~~~~l~v~w 845 (876)
T PRK15193 812 TVT--LDDQ--HNSGIVDDDGSVYLSGLPAQGVLHVRW 845 (876)
T ss_pred EEE--CCCC--ceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 664 3322 245789999999999999887655544
No 137
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=68.89 E-value=6.1e+02 Score=37.81 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=36.5
Q ss_pred CCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecCcccccce----------EEEEecCCeEEEEEEEEecc
Q 001065 990 GLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLD----------FLVFEQPEKTILSGHVEGNR 1053 (1167)
Q Consensus 990 gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~~~~~----------f~~~~~~~~~~i~g~V~~~~ 1053 (1167)
-|.+||.|.+++.-..+ | + +..-..++|.|...++=.+. +..+.+.+.+-|.|+..+..
T Consensus 2326 ~L~~g~~Y~F~L~VsK~-g--R--~~~s~~QtI~Vv~g~~P~v~I~CvsC~~~~~~~Vnps~~l~L~g~C~NC~ 2394 (2740)
T TIGR00864 2326 ELAAGIEYTFKLSIGKA-G--M--KEEATNQTVLIQSGHIPIVSLECVSCKAQALYEVSQNSYVYLEGRCLNCQ 2394 (2740)
T ss_pred HcCCCcEEEEEEEEEeC-C--C--CccceeEEEEEecCCCceEEEEecccCCCceeecCCCceEEEEeEcCCCC
Confidence 38999999999984322 1 1 11124577777666654444 33346677777877776654
No 138
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=67.55 E-value=47 Score=43.09 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=30.8
Q ss_pred eEEEEEEEeCCCCceeceEEEEcceeeeEeCCCceEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKL 363 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~~~~TD~dG~y~~ 363 (1167)
+++-|++++++|.|+.+|.| +|... ..||++|.|.+
T Consensus 786 ~~yiGr~~~~~G~~l~~a~I-lN~~~-~~td~~GgF~~ 821 (895)
T PRK15310 786 RLYVGRVLDKDGRPLLDAQP-LNYPF-LSLGPSGRFSL 821 (895)
T ss_pred EEEEEEEECCCCCCccccee-ecCcc-ceecCCCCEEE
Confidence 45789999999999999977 55444 79999999999
No 139
>PRK15207 long polar fimbrial outer membrane usher protein LpfC; Provisional
Probab=66.76 E-value=66 Score=42.57 Aligned_cols=107 Identities=13% Similarity=0.152 Sum_probs=64.8
Q ss_pred EEeCCCCeEEEcccCCcc-EEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ceE
Q 001065 268 AVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVK 344 (1167)
Q Consensus 268 ~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga~ 344 (1167)
+.||..|.-.+++|.|=. -+|......-+...++.-....+....+.+.+ ..|.+ .+..+--++.+++|+||+ |+.
T Consensus 698 ~~Td~~G~AvVP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~-v~F~~~~g~~~ll~l~~~~G~~lP~Ga~ 776 (842)
T PRK15207 698 VEVDWMGNAVVPYLTPYRETEVSLRSDSLGQNVDLQEAFQKVVPTRGAIVR-ARFDTRVGYRVLMSLKQANGNAVPFGAT 776 (842)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEE-EEEEEeeeeEEEEEEEcCCCCcCCccEE
Confidence 699999999999998632 23333111111112222222333333343332 23543 234455567888999998 898
Q ss_pred EEE-c--ceeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 345 ILV-D--GHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 345 V~l-~--G~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
|.+ + ++.+...+.+|.--+.++++ |..+|+-
T Consensus 777 V~~~~~~~~~~g~Vg~~G~vyl~gl~~~~~l~v~w 811 (842)
T PRK15207 777 ATLIDTTKEASSIVGEEGQLYISGMPEEGELQVSW 811 (842)
T ss_pred EEecCCCCceEEEECCCCEEEEEcCCCCceEEEEE
Confidence 887 3 44567999999999999986 5666654
No 140
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=66.60 E-value=32 Score=37.89 Aligned_cols=45 Identities=24% Similarity=0.473 Sum_probs=33.8
Q ss_pred CCCcceEEEEEeCCCcEEEEEEe--CCCceEEE---------ccccCceEEEEEEc
Q 001065 146 GGPSNVNVELLSHSGDLISSVIT--SSEGSYLF---------KNIIPGKYKLRASH 190 (1167)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~~ttT--d~~G~f~f---------~~l~pG~Y~l~~~~ 190 (1167)
.+...|+|++++.+|+++++..- -+.|.+.| ..+++|.|++++.+
T Consensus 123 ~~a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A 178 (225)
T PRK06655 123 SAADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASA 178 (225)
T ss_pred CCCcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEE
Confidence 46667999999999998876543 35787777 34788999888753
No 141
>PF06427 UDP-g_GGTase: UDP-glucose:Glycoprotein Glucosyltransferase; InterPro: IPR009448 The N-terminal region of this group of proteins is required for correct folding of the ER UDP-Glc: glucosyltransferase. These proteins selectively reglucosylates unfolded glycoproteins, thus providing quality control for protein transport out of the ER. Unfolded, denatured glycoproteins are substantially better substrates for glucosylation by this enzyme than are the corresponding native proteins. This protein and transient glucosylation may be involved in monitoring and/or assisting the folding and assembly of newly made glycoproteins, in order to identify glycoproteins that need assistance in folding from chaperones; GO: 0003980 UDP-glucose:glycoprotein glucosyltransferase activity, 0006486 protein glycosylation
Probab=66.22 E-value=15 Score=40.08 Aligned_cols=70 Identities=14% Similarity=0.378 Sum_probs=50.0
Q ss_pred CccEEEEEEcCCCcccCCceEEEEEcC---CCcCCc--ceeeEEEeCcEEEEEEEeccCCccccCCCCCCcceEEEEEeC
Q 001065 84 KGSFVIKVNGPEGWSWNPDKVAVTVDD---TGCNGN--EDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSH 158 (1167)
Q Consensus 84 ~G~Y~l~~~~P~G~~~~p~~~~v~Vd~---~~~s~~--~dinf~~~g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~ 158 (1167)
.=-|++.+..|+.|...|......+|. +..... ....|.++..-|+|.-.+.. ++.|+.|+.++|...
T Consensus 126 ~~llTl~~d~P~sW~V~~~~a~~DLDNI~l~~~~~~~~v~a~y~Le~iLieG~~~d~~-------~~~pp~Glql~L~~~ 198 (211)
T PF06427_consen 126 SPLLTLGMDVPESWLVEPKEAVYDLDNIKLSDLSSGTTVEAVYELESILIEGHARDIT-------TGSPPRGLQLQLGTE 198 (211)
T ss_pred CceEEecCCCCCceEEEEeecCcCCCceecccCCCCceEEEEEEEeeEEEEeEEeecC-------CCCCCCCcEEEEecC
Confidence 567888999999999887655433332 111222 46678889999999998752 478999999999865
Q ss_pred CC
Q 001065 159 SG 160 (1167)
Q Consensus 159 ~g 160 (1167)
++
T Consensus 199 ~~ 200 (211)
T PF06427_consen 199 NG 200 (211)
T ss_pred CC
Confidence 54
No 142
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=65.94 E-value=26 Score=38.55 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCCcceEEEEEeCCCcEEEEEEeC-CCceEEEcc-------ccCceEEEEEEc
Q 001065 146 GGPSNVNVELLSHSGDLISSVITS-SEGSYLFKN-------IIPGKYKLRASH 190 (1167)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~~ttTd-~~G~f~f~~-------l~pG~Y~l~~~~ 190 (1167)
.+...++|++++.+|+++++..-+ ..+.|..++ +++|.|++.+.+
T Consensus 121 ~~a~~v~v~I~D~~G~vV~t~~~~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A 173 (223)
T PRK12813 121 ADADKAELVVRDAAGAEVARETVPVGAGPVEWAGEDADGNPLPNGAYSFVVES 173 (223)
T ss_pred CCCceEEEEEEcCCCCEEEEEeeCCCceeEEeCCcCCCCCcCCCccEEEEEEE
Confidence 567789999999999887664332 223455553 788999988754
No 143
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=62.94 E-value=21 Score=32.52 Aligned_cols=45 Identities=22% Similarity=0.479 Sum_probs=28.8
Q ss_pred CCCcceEEEEEeCCCcEEEEEE--eCCCceEEEc---------cccCceEEEEEEc
Q 001065 146 GGPSNVNVELLSHSGDLISSVI--TSSEGSYLFK---------NIIPGKYKLRASH 190 (1167)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~~tt--Td~~G~f~f~---------~l~pG~Y~l~~~~ 190 (1167)
.+...++|.+++.+|+++++.. ..+.|.+.|. .+++|.|++++..
T Consensus 22 ~~a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 22 EDADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp SSCEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred CcccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 4566788999998888776532 3455655553 6888999988753
No 144
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=62.17 E-value=36 Score=31.92 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCcEEEE--E-EeCCCceEEEc-----cccCceEEEEEEcC
Q 001065 150 NVNVELLSHSGDLISS--V-ITSSEGSYLFK-----NIIPGKYKLRASHP 191 (1167)
Q Consensus 150 Gv~V~L~~~~g~~i~~--t-tTd~~G~f~f~-----~l~pG~Y~l~~~~~ 191 (1167)
-+.|+|.+.+|..+.. . .++.+|.|.+. +.+.|.|+|.+...
T Consensus 37 ~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 37 PVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred ceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 4677788999966543 3 45899998876 33459999999774
No 145
>PRK15304 putative fimbrial outer membrane usher protein; Provisional
Probab=61.10 E-value=81 Score=41.54 Aligned_cols=107 Identities=15% Similarity=0.103 Sum_probs=63.1
Q ss_pred EEEeCCCCeEEEcccCCccE-EEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ce
Q 001065 267 HAVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1167)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga 343 (1167)
.+.||..|.-.+++|.|=.. +|......-+...++.-....+....+.+.+ ..|.+ .+..+--++.+++|+|++ |+
T Consensus 658 ~v~Td~~G~AvvP~l~pY~~N~i~id~~~Lp~dvel~~t~~~VvPt~GAvv~-v~F~~~~g~~~l~~l~~~~G~~lPfGa 736 (801)
T PRK15304 658 PVWTDFWGQAVIPGLTEWRKSRVEVNTNTLPKNMDLANGTKMIKAAHGAVSK-VDFSVLNQRRVMLNVKRADGSPLPKGV 736 (801)
T ss_pred ceEECCCCeEEeCCCCCceeeeEEECccCCCCCEEEccCEEEEEeCCCcEEE-EEEEEccceEEEEEEEccCCCcCCCcE
Confidence 35899999999999986322 2322111111112222222333333333322 23543 233444567788999886 66
Q ss_pred EEEE-cceeeeEeCCCceEEECcCCC-ccEEEE
Q 001065 344 KILV-DGHERSITDRDGYYKLDQVTS-NRYTIE 374 (1167)
Q Consensus 344 ~V~l-~G~~~~~TD~dG~y~~~~L~p-G~Y~I~ 374 (1167)
.|.. +|+.+...+.+|..-+.++++ |..+|+
T Consensus 737 ~V~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~ 769 (801)
T PRK15304 737 SIVDEKGNYLTSAVDDGRVFLNDIDDIPALYAK 769 (801)
T ss_pred EEECCCCcEEEEEeCCCEEEEECCCCCceEEEE
Confidence 6654 567778899999999999987 556565
No 146
>PRK15223 pilin outer membrane usher protein SafC; Provisional
Probab=59.57 E-value=98 Score=40.97 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=64.3
Q ss_pred EEEeCCCCeEEEcccCCccE-EEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ce
Q 001065 267 HAVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1167)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga 343 (1167)
...||..|.-.++.|.|=.. +|......-+...++.-....+....+.+.+. .|.+ .+..+--++.+++|+||+ |+
T Consensus 695 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~-~F~~~~g~~~ll~l~~~~G~~lP~Ga 773 (836)
T PRK15223 695 GVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPTEGAVVEA-KFHTRIGARALMTLKREDGSAIPFGA 773 (836)
T ss_pred CCEECCCCeEEeCCCCCceeceEEECCCCCCCCEEecCcEEEEEecCCcEEEE-EEEEeeeEEEEEEEECCCCCcCCCCe
Confidence 47999999999999986321 22221011111112222223333333433322 3543 234455567788999886 78
Q ss_pred EEEEc--ceeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 344 KILVD--GHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 344 ~V~l~--G~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
.|.++ |+.+...+.+|..-+.++++ |+.+|+.
T Consensus 774 ~v~~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~w 808 (836)
T PRK15223 774 QVTVNGQDGSAALVDTDSQVYLTGLADKGELTVKW 808 (836)
T ss_pred EEEecCCCceEEEECCCCEEEEEccCCCceEEEEE
Confidence 77764 45678999999999999986 5666654
No 147
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=58.87 E-value=31 Score=33.17 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=32.3
Q ss_pred CCCcceEEEEEeCCCcEEEE-EEeCCCc---eEEEccccCceEEEEEEcCCc
Q 001065 146 GGPSNVNVELLSHSGDLISS-VITSSEG---SYLFKNIIPGKYKLRASHPNL 193 (1167)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~~-ttTd~~G---~f~f~~l~pG~Y~l~~~~~g~ 193 (1167)
.++..|+|++.+.+|+++.+ ..+...+ .+.+.++++|.|.|.......
T Consensus 45 ~~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 45 SPIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp S--SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred CCCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 68888999999988977764 4455555 677788999999999876644
No 148
>PRK15284 putative fimbrial outer membrane usher protein StfC; Provisional
Probab=58.27 E-value=99 Score=41.15 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=62.8
Q ss_pred EEeCCCCeEEEcccCCcc-EEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ceE
Q 001065 268 AVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVK 344 (1167)
Q Consensus 268 ~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga~ 344 (1167)
+.||..|.-.+++|.|=. -+|......-+...++.-....+....+.+... .|.+ .+..+-=++.+++|+|++ |+.
T Consensus 706 v~Td~~G~AvVp~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~~-~F~~~~g~~~l~~l~~~dG~~lPfGa~ 784 (881)
T PRK15284 706 VYTNMFGKAVVADVNNYYRNQAYIDLNNLPEDAEATQSVVQATLTEGAIGYR-KFAVISGQKAMAVLRLRDGSHPPFGAE 784 (881)
T ss_pred ceECCCCeEEeCCCCcceeeeEEECCcCCCCCEEEccCEEEEEEcCCcEEEE-EEEEeeeeEEEEEEEcCCCCcCCCceE
Confidence 589999999999998632 223321111111112222223333333333222 3442 233343456778899886 777
Q ss_pred EEE-cceeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 345 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 345 V~l-~G~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
|.. +|+.+...+.+|.--+.++++ |+.+|+-
T Consensus 785 V~~~~g~~~giVg~~G~vyL~gl~~~~~l~V~w 817 (881)
T PRK15284 785 VKNDNQQQVGLVDDDGNVYLAGVKPGEHMQVFW 817 (881)
T ss_pred EEcCCCceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 765 567778999999999999986 5666654
No 149
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=58.07 E-value=2e+02 Score=33.13 Aligned_cols=114 Identities=22% Similarity=0.305 Sum_probs=60.4
Q ss_pred CcceEEEcCCCCCCEEEEEEEeccCC--------CCcceeecCCceEEE--------EecCcccccceEEEEe-c---CC
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKDGF--------GSTKIERASPESVTV--------KVGSGDIKGLDFLVFE-Q---PE 1041 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~~~--------~~~~i~~~~p~~~~v--------~v~~~d~~~~~f~~~~-~---~~ 1041 (1167)
..=++-|++|+|++.|.+.|=.-+.. |.....+..++.... .+.=+.-.|+.|..|+ | ..
T Consensus 13 ~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~~~ 92 (300)
T PF10179_consen 13 QKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRSST 92 (300)
T ss_pred CCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCCCC
Confidence 34578899999999999988754321 222222111221111 2222233457888887 3 22
Q ss_pred eEEEEEEEEecccccccceeEEEEEecCCCCceEEEEeeCCceeEEeccCCCC-cEEEEEEe
Q 001065 1042 KTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1042 ~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~~v~~~~~~~~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
+-.+.=.|...+ . .++|+|++... .+.+.-.+---..|.++++.+| +|.|+++.
T Consensus 93 ~~~~~l~v~~C~----G-~V~v~i~r~gk--~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~ 147 (300)
T PF10179_consen 93 HQSLWLFVQSCS----G-SVRVEISRNGK--ILLSQKNVEGLRHFRLSGVKPGERYLIRIQI 147 (300)
T ss_pred CccEEEEEEeCC----C-eEEEEEEECCe--EEeeeecccceEEEEECCCCCCCeEEEEEEc
Confidence 222322233332 1 38888887643 2222112222245888887777 69999953
No 150
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=56.48 E-value=76 Score=34.95 Aligned_cols=85 Identities=21% Similarity=0.354 Sum_probs=48.3
Q ss_pred eEEEeCcEEEEEEEeccCCccccCCCCCCcceEEEEEeCCC--cEEEEEEeCCCceEEEccccCceEEEEE-EcCC---c
Q 001065 120 NFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG--DLISSVITSSEGSYLFKNIIPGKYKLRA-SHPN---L 193 (1167)
Q Consensus 120 nf~~~g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g--~~i~~ttTd~~G~f~f~~l~pG~Y~l~~-~~~g---~ 193 (1167)
|+.-+-..++|++.+..-++.- ....-|++++|+..+- ..-.......||.|+=.-|=.|+|.|.. ..++ |
T Consensus 16 NYD~P~s~l~G~iiD~~tgE~i---~~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~~~G~fp~~~ 92 (222)
T PF12866_consen 16 NYDEPDSTLTGRIIDVYTGEPI---QTDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVPKNGNFPWVV 92 (222)
T ss_dssp ------EEEEEEEEECCTTEE-------STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE-CTSCSBSC
T ss_pred CCcCCCceEEEEEEEeecCCee---eecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEEcCCCCcccC
Confidence 5665667899999774222211 1122499999996642 1234667889999966779999999999 6677 4
Q ss_pred eeEeecceEEEEccCCee
Q 001065 194 SVEVRGSTEVELGFENGE 211 (1167)
Q Consensus 194 ~~~~~~~~~V~v~~~~~~ 211 (1167)
..+ .+.|++. |++.
T Consensus 93 ~~d---ti~v~i~-G~t~ 106 (222)
T PF12866_consen 93 PVD---TIEVDIK-GNTT 106 (222)
T ss_dssp CE-----EEEEES-SCEE
T ss_pred CCc---cEEEEec-CceE
Confidence 433 3567776 5443
No 151
>COG3188 FimD P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.11 E-value=2.4e+02 Score=37.29 Aligned_cols=103 Identities=11% Similarity=0.120 Sum_probs=62.1
Q ss_pred EEEeCCCCeEEEcccCCccE-EEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ce
Q 001065 267 HAVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1167)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga 343 (1167)
.+.||..|.-.++.|.|=.+ +|...-..-+...++.-....+....+.+.+. .|.. .+..+--++.+++|+||+ ||
T Consensus 693 ~~~Td~~G~avvP~lspY~~n~v~lD~~~Lp~dvel~~~~~~v~Pt~GAvv~~-~F~t~~g~~~li~l~~~dG~~lPfGa 771 (835)
T COG3188 693 GVRTDRRGYAVVPYLTPYRENRVSLDPNNLPDDVELENTVQNVVPTEGAVVLA-DFDTRIGYRALITLRRADGSPLPFGA 771 (835)
T ss_pred CcEEcCCCcEeccCcccceeceEEEccccCCCceEecccEEEEEEcCCeEEEE-EEeeeceeEEEEEEECCCCCcCCCce
Confidence 57999999999998875332 22221011000111222222333333333222 3442 344556667788899886 78
Q ss_pred EEEEcce--eeeEeCCCceEEECcCCCcc
Q 001065 344 KILVDGH--ERSITDRDGYYKLDQVTSNR 370 (1167)
Q Consensus 344 ~V~l~G~--~~~~TD~dG~y~~~~L~pG~ 370 (1167)
.|+.++. .+...+.+|..-|++|++..
T Consensus 772 ~v~~~~~~~~~g~Vg~~G~vyl~gl~~~~ 800 (835)
T COG3188 772 EVTDEGGGQNVGIVGDDGQVYLRGLPPKG 800 (835)
T ss_pred EEEECCCceEEEEEecCCeEEEecCCCCC
Confidence 8888544 57899999999999998855
No 152
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=55.79 E-value=1.8e+02 Score=32.09 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=51.2
Q ss_pred cCCCcceEEeeccC---ccccC-C---CceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCcc-CccEEEEEeC-CC-
Q 001065 903 NLFPGNFYLRPLLK---EYAFS-P---PAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPK-DGVSVEARSE-SK- 972 (1167)
Q Consensus 903 ~L~PG~Y~~~~~~k---ey~~~-p---~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~-~gv~v~~~~~-~~- 972 (1167)
.|++|.|.+++... .=.|+ | -++.|+|++|+++.+.|+.+..--.+.=..+.-=-+-+ .+..|.+... ++
T Consensus 61 ~L~~G~Ytv~A~~g~~~~~~~d~pyy~G~~~f~I~~g~~t~v~v~C~laN~~V~v~~~~~f~~~f~~~y~vtV~~~~~~~ 140 (235)
T PF14900_consen 61 ELPVGSYTVKASYGDNVAAGFDKPYYEGSTTFTIEKGETTTVSVTCKLANAKVTVNYDDEFKKYFGSDYSVTVSTGAGGS 140 (235)
T ss_pred eecCCcEEEEEEcCCCccccccCceeecceeEEEecCCcEEEEEEEEeeeeEEEEEeCHHHHhhhccceEEEEEccCCcc
Confidence 68999999998732 11222 2 45689999999999998776554322222221112334 5566666544 22
Q ss_pred Cee--eEEeecCcceEEEcC
Q 001065 973 GYY--EETVTDTSGSYRLRG 990 (1167)
Q Consensus 973 ~~~--~~~~Td~~G~~~i~g 990 (1167)
... .+..++.-++|.+..
T Consensus 141 ~~~~~~~~~~~~~~Yf~~~~ 160 (235)
T PF14900_consen 141 VTFNKDETTSDRSAYFKAGE 160 (235)
T ss_pred EEEeeccCCCCcceEEECCC
Confidence 122 334455667776666
No 153
>PRK15248 fimbrial outer membrane usher protein StbC; Provisional
Probab=55.23 E-value=95 Score=41.21 Aligned_cols=107 Identities=11% Similarity=0.048 Sum_probs=64.3
Q ss_pred EEeCCCCeEEEcccCCc-cEEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ceE
Q 001065 268 AVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVK 344 (1167)
Q Consensus 268 ~~TD~~G~f~f~~LppG-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga~ 344 (1167)
.+||..|.-.+++|.|= .-+|......-+...++.-....+....+.+.+ ..|.+ .+..+--++.+++|+||+ |+.
T Consensus 710 ~~Td~~G~avVp~L~pY~~N~i~ID~~~LP~dvel~~t~~~vvP~~GAiv~-~~F~~~~g~~~l~~l~~~dG~~lP~Ga~ 788 (853)
T PRK15248 710 AVVDRFGYAILPSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIAR-VNFATISGKAVLISVKMPDGGIPPMGAD 788 (853)
T ss_pred CeECCCCeEEeCCCCCceeeeEEECCcCCCCCEEEcccEEeecccCCcEEE-EEEEEeeceEEEEEEEcCCCCcCCCceE
Confidence 67999999999999862 223333111111111222222233333333322 23543 344566678888999886 777
Q ss_pred EEE-cceeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 345 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 345 V~l-~G~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
|.. +|+.+...+.+|..-+.++++ |+.+|+-
T Consensus 789 V~~~~g~~~g~Vg~~G~vyl~~~~~~~~l~V~w 821 (853)
T PRK15248 789 VFNGEGTNIGMVGQSGQIYARIAHPSGSLLVRW 821 (853)
T ss_pred EECCCCcEEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 765 567778999999999999986 5566654
No 154
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=54.82 E-value=4.4e+02 Score=31.42 Aligned_cols=48 Identities=25% Similarity=0.184 Sum_probs=32.2
Q ss_pred cCCCcEEE---cccCCccEEEEEEeecccccccCCCceEEee-eEEEEEecCCccceeEEEe
Q 001065 533 DDSDQFLF---RDVLPGKYRLEVKRTSREASSMEDNWCWEQS-FIGVDVGTNDVKGVEFVQK 590 (1167)
Q Consensus 533 d~~G~f~f---~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~~-~~~v~V~~~~~~~~~F~q~ 590 (1167)
-++|.|+- -+++||.|++.+... +-.+... ++.|.|.+..+. .+|.|.
T Consensus 168 p~DGvFT~~l~l~~~~G~Y~~~v~~~---------n~vF~R~~~q~v~V~p~Pi~-~~~~~~ 219 (374)
T TIGR03503 168 PGDGIFTGEFNLDVAPGEYRPTYQSR---------NPVFLREVEQPVLVYPLPVS-YTVIQS 219 (374)
T ss_pred CCCceEEEEeeccCCCceEEEEEEEc---------CceEEEEEEEeEEEECCCee-EEEEcc
Confidence 36788876 467899999999853 3334443 557777776644 566664
No 155
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=54.42 E-value=2.7e+02 Score=28.93 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=48.9
Q ss_pred EEEE-EcCeeEEEEE-EeecCCCCCCeeee-CceEEEEEc--CcccceEEE---EeeeEEEEEEe----eccCCCCceEE
Q 001065 444 FCFE-VPPGEYRLSA-MAATPESSSGILFL-PPYADVVVK--SPLLNIEFS---QALVNVLGNVA----CKERCGPLVTV 511 (1167)
Q Consensus 444 f~f~-L~pG~Y~v~~-~~~~~~~~~G~~~~-p~~~~V~V~--~p~~~I~f~---q~~a~V~G~V~----~~~~~~~~~~V 511 (1167)
|.+. |+.|.|++.+ .+.+. .|=... .....+.++ .|...|... ..+..+.|.+. +.+... ...+
T Consensus 7 fd~~~l~dG~Y~l~~~~a~D~---agN~~~~~~~~~~~iD~T~Ptisi~~~~~~~~g~~v~~~~~i~i~~tD~~~-~~~i 82 (158)
T PF13750_consen 7 FDLSTLPDGSYTLTVVTATDA---AGNTSTSTVSETFTIDNTPPTISISDGASVANGSTVYGLVNISINVTDNSD-DSKI 82 (158)
T ss_pred EEeCcCCCccEEEEEEEEEec---CCCEEEEEEeeEEEEcCCCCEEEEecCCccCCCccccceeeeEEEEEeCCC-CceE
Confidence 4445 9999999999 45432 221111 112245553 566666221 12334444332 222222 2244
Q ss_pred EEEEcCcccccCCcceeEEE-ecCCCcEEEc------ccCCc-cEEEEEEee
Q 001065 512 TLMRLGQKHYDGTEKKTVSL-TDDSDQFLFR------DVLPG-KYRLEVKRT 555 (1167)
Q Consensus 512 tL~~~~~~~~~~~~~~~~~~-Td~~G~f~f~------~L~PG-~Y~v~~~~~ 555 (1167)
+.....|+. ..+...... ..++|.|.++ .|.+| .|+|++...
T Consensus 83 ~sv~l~Gg~--~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~ 132 (158)
T PF13750_consen 83 TSVSLTGGP--ASDSVSLSWTNKGNGVYTLEYPRIFPSLEADDSYTLTVSAT 132 (158)
T ss_pred EEEEEECCc--ccceEEEeeEeccCceEEeecccccCCcCCCCeEEEEEEEE
Confidence 444433321 011222222 2456777663 34445 588888764
No 156
>PRK15273 putative fimbrial outer membrane usher protein SteB; Provisional
Probab=52.59 E-value=1.5e+02 Score=39.60 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=63.7
Q ss_pred EEeCCCCeEEEcccCCccE-EEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ceE
Q 001065 268 AVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVK 344 (1167)
Q Consensus 268 ~~TD~~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga~ 344 (1167)
+.||..|.-.++.|.|=.. +|......-+...++.-....+....+.+.+ ..|.+ .+..+-=++.+++|+|++ ||.
T Consensus 683 ~~Td~~G~AvvP~L~pY~~N~i~ID~~~LP~dvei~~t~~~vvPt~GAiv~-~~F~~~~g~~~l~~l~~~dG~~lPfGa~ 761 (881)
T PRK15273 683 TSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGY-RHFDVVSGEKMMAVFRLADGDFPPFGAE 761 (881)
T ss_pred CeECCCCeEEeCCCCcceeeeEEECCcCCCCCEEeccCEEEEEecCCCEEE-EEEEEEeeeEEEEEEEccCCCcCCCceE
Confidence 7999999999999986321 2222101111112222223333333344332 23543 233444467788999886 777
Q ss_pred EEE-cceeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 345 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 345 V~l-~G~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
|.. +|+.+...+.+|.--+.++++ |+.+|.-
T Consensus 762 V~~~~g~~~giVg~~G~vyl~g~~~~~~l~V~w 794 (881)
T PRK15273 762 VKNERQQQLGLVADDGNAWLAGVKAGETLKVFW 794 (881)
T ss_pred EEcCCCcEEEEEcCCCEEEEecCCCCceEEEEe
Confidence 765 577778999999999999987 5665543
No 157
>PRK15213 fimbrial outer membrane usher protein PefC; Provisional
Probab=52.19 E-value=1.7e+02 Score=38.54 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=62.3
Q ss_pred EEEeCCCCeEEEcccCCc-cEEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ce
Q 001065 267 HAVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1167)
Q Consensus 267 ~~~TD~~G~f~f~~LppG-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga 343 (1167)
...||..|.-.++ |.|= .-+|......-+...++.-....+....+.+.+ ..|.+ .+..+--++.+++|+||+ |+
T Consensus 665 ~~~Td~~G~alVP-l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~gAvv~-~~F~~~~g~~~ll~l~~~~G~~lP~Ga 742 (797)
T PRK15213 665 SGPTDSKGNTVVP-LSSYDLNTVTVNAENLPLNTELTTTSQNVVPTDKAVVY-REFKALKVLRYILRVKQKDGRFVPGGS 742 (797)
T ss_pred CcEECCCCeEEEe-CCCceeeeEEECccCCCCCEEecccEEEEEecCCcEEE-EEEEEEeeeEEEEEEEccCCCcCCCCe
Confidence 5699999999999 8752 222322101111112222222333333333332 23543 234455567888999886 66
Q ss_pred EEEE-cceeeeEeCCCceEEECcCCC-ccEEE
Q 001065 344 KILV-DGHERSITDRDGYYKLDQVTS-NRYTI 373 (1167)
Q Consensus 344 ~V~l-~G~~~~~TD~dG~y~~~~L~p-G~Y~I 373 (1167)
.|.- +|+.+...+.+|.--+.++++ |+.+|
T Consensus 743 ~v~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v 774 (797)
T PRK15213 743 WARNEQGTPLGFVANNGVLLMNLLDAPGDISV 774 (797)
T ss_pred EEECCCCcEEEEEcCCCEEEEEcCCCCCEEEE
Confidence 6654 566778999999999999986 67777
No 158
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=52.07 E-value=30 Score=31.50 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=29.0
Q ss_pred cccceEEEEEeCCCcEEEeEEe--cCCcEEE--eC-------CCCCccEEEEEEc
Q 001065 50 DYSHVTVELRTLDGLVKESTQC--APNGYYF--IP-------VYDKGSFVIKVNG 93 (1167)
Q Consensus 50 ~~sgv~v~L~~~~G~~~~~t~t--~~nG~y~--~~-------~l~~G~Y~l~~~~ 93 (1167)
+.+.++|.++|.+|+++.+-.- .+.|.+. -+ .+++|.|.+++.+
T Consensus 23 ~a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 23 DADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp SCEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred cccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEE
Confidence 3447899999999999887533 3356444 44 4578999998875
No 159
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=50.93 E-value=22 Score=29.24 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEEEccCCCCCcccceEEEEECCcce
Q 001065 859 QISVRIYSKDDAGEPIPSVLLSLSGDDGY 887 (1167)
Q Consensus 859 ~i~~~v~~~~~~~~pl~gvllslsg~~~~ 887 (1167)
+|.++|.-.|.+|.|++++-|.|..++++
T Consensus 14 ~I~ltVt~kda~G~pv~n~~f~l~r~~~~ 42 (47)
T PF05688_consen 14 TIPLTVTVKDANGNPVPNAPFTLTRGDAK 42 (47)
T ss_pred eEEEEEEEECCCCCCcCCceEEEEecCcc
Confidence 34444433334599999999999998765
No 160
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=50.04 E-value=1.4e+02 Score=38.58 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=58.5
Q ss_pred ceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceE--EEEecCcccc---cceEEEEecCCeEEEEEEEEeccccccc
Q 001065 984 GSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESV--TVKVGSGDIK---GLDFLVFEQPEKTILSGHVEGNRIKELN 1058 (1167)
Q Consensus 984 G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~--~v~v~~~d~~---~~~f~~~~~~~~~~i~g~V~~~~~~~~~ 1058 (1167)
=+..|.||+|-..|+.++.+..+- +..-..-+.+. +|..+.+... .++.... ....+.|+=.+-..+ .-.+
T Consensus 398 ~~V~v~~L~ah~~YTFeV~AvNgV--S~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~-~~~sitlsW~~p~~p-ng~i 473 (996)
T KOG0196|consen 398 TSVTVSDLLAHTNYTFEVEAVNGV--SDLSPFPRQFASVNITTNQAAPSPVSVLRQVSR-TSDSITLSWSEPDQP-NGVI 473 (996)
T ss_pred ceEEEeccccccccEEEEEEeecc--cccCCCCCcceeEEeeccccCCCccceEEEeee-ccCceEEecCCCCCC-CCcc
Confidence 367899999999999999986432 22222223333 4444444332 2333332 112222221110000 0112
Q ss_pred ceeEEEEEecCCCCceEEEEeeCCceeEEeccCCCC-cEEEEEEe
Q 001065 1059 SHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1059 ~~l~v~l~~~~~~~~v~~~~~~~~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
-...|+.|..+....-.+ ..........+..|.+| .|.+|+..
T Consensus 474 ldYEvky~ek~~~e~~~~-~~~t~~~~~ti~gL~p~t~YvfqVRa 517 (996)
T KOG0196|consen 474 LDYEVKYYEKDEDERSYS-TLKTKTTTATITGLKPGTVYVFQVRA 517 (996)
T ss_pred eeEEEEEeecccccccee-EEecccceEEeeccCCCcEEEEEEEE
Confidence 234466666653222233 22344567889999999 69988874
No 161
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=49.70 E-value=36 Score=31.78 Aligned_cols=48 Identities=6% Similarity=0.024 Sum_probs=32.8
Q ss_pred EEEeCCCCceeceEEEEcceeeeEeCCCceEEECcCCCccEEEEEEecc
Q 001065 331 RVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKVH 379 (1167)
Q Consensus 331 ~V~d~~G~pl~Ga~V~l~G~~~~~TD~dG~y~~~~L~pG~Y~I~~~~~~ 379 (1167)
.++|.++.|.+|..|..|.+-+---+..=+..+ +|+||+|+|++.-.+
T Consensus 25 lliD~~~~~~~~~~I~~~~n~vhy~~Gqte~~I-~L~PG~htLtl~~~d 72 (87)
T PF14347_consen 25 LLIDGDGPPLANEPIPFNINGVHYGKGQTELNI-ELPPGKHTLTLQLGD 72 (87)
T ss_pred EEECCCCCcCCCCeeeecCCeEEeCCCEEEEEE-EeCCCCEEEEEEeCC
Confidence 456778888999988875444433222224566 699999999987644
No 162
>PRK15217 fimbrial outer membrane usher protein; Provisional
Probab=49.60 E-value=1.7e+02 Score=38.81 Aligned_cols=109 Identities=6% Similarity=0.057 Sum_probs=63.3
Q ss_pred eEEEeCCCCeEEEcccCCcc-EEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-c
Q 001065 266 CHAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-G 342 (1167)
Q Consensus 266 ~~~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-G 342 (1167)
..+.||..|.-.+++|.|=. =+|......-+...++.-....+....+.+.+ ..|.+ .+..+--++.+++|+|++ |
T Consensus 688 ~~~~Td~~G~AvvP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAiv~-~~F~~~~g~~~ll~l~~~~G~~lP~G 766 (826)
T PRK15217 688 KYRTTNRKGVVVYDGLTPYRENHLMLDVSQSDSETELRGNRKIAAPYRGAVVL-VNFDTDQRKPWFIKALRADGQPLTFG 766 (826)
T ss_pred CCCeECCCCEEEeCCCCCceeceEEECCcCCCCCEEecccEEEEEecCCcEEE-EEEEEecceEEEEEEEcCCCCcCCCc
Confidence 34789999999999998632 12222101111112222222333333343332 23543 234455567788999986 6
Q ss_pred eEEEE-cceeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 343 VKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 343 a~V~l-~G~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
+.|.- +|+.+.....+|.--+.++.+ +..+|..
T Consensus 767 a~V~~~~g~~~g~Vg~~G~vyl~g~~~~~~l~v~w 801 (826)
T PRK15217 767 YEVNDIHGHNIGVVGQGSQLFIRTNEVPPSVKVAI 801 (826)
T ss_pred eEEECCCCcEEEEEcCCCeEEEEcCCCCceEEEEE
Confidence 66655 677778999999988887754 6665554
No 163
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=49.46 E-value=37 Score=37.33 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=31.6
Q ss_pred cccceEEEEEeCCCcEEEeEEecC-CcEEEeCC-------CCCccEEEEEEc
Q 001065 50 DYSHVTVELRTLDGLVKESTQCAP-NGYYFIPV-------YDKGSFVIKVNG 93 (1167)
Q Consensus 50 ~~sgv~v~L~~~~G~~~~~t~t~~-nG~y~~~~-------l~~G~Y~l~~~~ 93 (1167)
+-+.++|.++|.+|+++++-.-.. .+.|..+. +++|.|++++.+
T Consensus 122 ~a~~v~v~I~D~~G~vV~t~~~~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A 173 (223)
T PRK12813 122 DADKAELVVRDAAGAEVARETVPVGAGPVEWAGEDADGNPLPNGAYSFVVES 173 (223)
T ss_pred CCceEEEEEEcCCCCEEEEEeeCCCceeEEeCCcCCCCCcCCCccEEEEEEE
Confidence 345899999999999987765433 34565553 567888887765
No 164
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=48.24 E-value=98 Score=34.00 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=29.6
Q ss_pred CCCcceEEEEEeCCCcEEEEEE--eCCCceEEEc--c----ccCceEEEEEEc
Q 001065 146 GGPSNVNVELLSHSGDLISSVI--TSSEGSYLFK--N----IIPGKYKLRASH 190 (1167)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~~tt--Td~~G~f~f~--~----l~pG~Y~l~~~~ 190 (1167)
.+...|+|.+++.+|++ .+.. ....|.+.|. + +++|.|++.+..
T Consensus 120 ~~a~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a 171 (218)
T PRK09619 120 HPAPTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVS 171 (218)
T ss_pred CcCcEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEE
Confidence 45667999999998885 4332 2245655554 3 788889888753
No 165
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.20 E-value=30 Score=36.63 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=49.0
Q ss_pred cccceEEEEEeCCCcEEEeEEecCCcEEEeCCCCCccEEEEEEcCCCcccCCceEEEEEcC
Q 001065 50 DYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDD 110 (1167)
Q Consensus 50 ~~sgv~v~L~~~~G~~~~~t~t~~nG~y~~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~ 110 (1167)
++-++.++++.|+|+.++...-+..|.|.|..-.+|.|+.-+..+. -..+|..+.++|+.
T Consensus 53 g~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~~-s~mtpk~V~F~ihv 112 (201)
T KOG1692|consen 53 GFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNKM-STMTPKTVMFTIHV 112 (201)
T ss_pred CccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCCC-CCCCceEEEEEEEE
Confidence 5568999999999999998877778999988888999999988775 33567777766655
No 166
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=47.57 E-value=1.6e+02 Score=33.91 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=45.2
Q ss_pred ceeEEecCCcEEEEEEEEEee--eEE------------EEEEEEcCCCCccCccEEEEEeCCCCeeeEEeecCcceEEEc
Q 001065 924 AQAIELGSGESREVIFQATRV--AYS------------ATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLR 989 (1167)
Q Consensus 924 ~~~i~v~~G~~~~v~~~~~r~--~~s------------~~G~V~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~ 989 (1167)
++..+++||+-..+.|.++.. .|+ +.-.|.+=+|. |.|++.-.++.+.-+...-.-.+|+|+
T Consensus 58 ~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~~~~~~~~l~v~~C~G~----V~v~i~r~gk~l~~~~~v~~~~~f~l~ 133 (300)
T PF10179_consen 58 SKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRSSTHQSLWLFVQSCSGS----VRVEISRNGKILLSQKNVEGLRHFRLS 133 (300)
T ss_pred CCcEEcccCcEEEEEECCcCceeEEEEcCCcCCCCCccEEEEEEeCCCe----EEEEEEECCeEEeeeecccceEEEEEC
Confidence 445566666666666655543 111 11112222333 566666555544444455566799999
Q ss_pred CCCCCCEEEEEEE
Q 001065 990 GLHPDTTYVIKVV 1002 (1167)
Q Consensus 990 gL~pg~~y~v~~~ 1002 (1167)
|+.||..|.|++.
T Consensus 134 ~~~~g~~Yliri~ 146 (300)
T PF10179_consen 134 GVKPGERYLIRIQ 146 (300)
T ss_pred CCCCCCeEEEEEE
Confidence 9999999999994
No 167
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.39 E-value=2e+02 Score=33.57 Aligned_cols=124 Identities=18% Similarity=0.248 Sum_probs=73.8
Q ss_pred eeEEEEEEEccCCCCCcccceEEEEECCc-ceeeceeecCCceEEEec-CCCcceEEeeccCccccCCCceeEEecCCcE
Q 001065 857 LSQISVRIYSKDDAGEPIPSVLLSLSGDD-GYRNNSVSWAGGSFHFDN-LFPGNFYLRPLLKEYAFSPPAQAIELGSGES 934 (1167)
Q Consensus 857 l~~i~~~v~~~~~~~~pl~gvllslsg~~-~~r~n~~T~~~G~~~f~~-L~PG~Y~~~~~~key~~~p~~~~i~v~~G~~ 934 (1167)
.+.|++++-.....+..+.+..++....+ -+|.+..+ ..|++.++- ..-+++.+.-++++.- -+=.-.+..++|-+
T Consensus 288 ~~ri~~tvg~~~~~gK~ie~itVt~~~pn~i~~~~k~~-~~g~~~~~~~~k~l~W~~~~i~tg~l-p~Lkg~~~~e~~~s 365 (418)
T KOG2740|consen 288 QGRISLTVGPKKKMGKTIELITVTVQDPNEIAYASKIL-THGTFTNSIIMKQLTWTFGSIATGKL-PVLKGTINLEPGFS 365 (418)
T ss_pred eEEEEEeccccccccceeEeEEEEecCccceeeeeccc-ccceeEeecccceeEEEeecccCCcc-cccccccccCCCCC
Confidence 57777777655555788888877666553 24555444 566666653 3344444433333221 22334467777877
Q ss_pred EEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEEeCC----CCeeeEEeecCcceEEEc
Q 001065 935 REVIFQATRVAYSATGTITLLSGQPKDGVSVEARSES----KGYYEETVTDTSGSYRLR 989 (1167)
Q Consensus 935 ~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~~~----~~~~~~~~Td~~G~~~i~ 989 (1167)
....+.--.-.|++.| ..+.|..||..++- +.+.+--.+-.-|+|.+|
T Consensus 366 k~~~l~t~~Lqykiqg-------~alsglkVe~Ldm~~~~~k~yKGvKy~t~agnfqvR 417 (418)
T KOG2740|consen 366 KKVDLPTLSLQYKIQG-------QALSGLKVERLDMYGEPYKPYKGVKYKTKAGNFQVR 417 (418)
T ss_pred ccccCcccceeeeeee-------eeccceEEEeeeecCCCCccccceEEEEeeeeEEEe
Confidence 7666666666776654 57889999999873 234343444455777665
No 168
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=47.28 E-value=36 Score=37.52 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=31.0
Q ss_pred cccceEEEEEeCCCcEEEeEEec--CCcEEEe---------CCCCCccEEEEEEc
Q 001065 50 DYSHVTVELRTLDGLVKESTQCA--PNGYYFI---------PVYDKGSFVIKVNG 93 (1167)
Q Consensus 50 ~~sgv~v~L~~~~G~~~~~t~t~--~nG~y~~---------~~l~~G~Y~l~~~~ 93 (1167)
+-..++|.++|.+|+++++..-. +.|.+.| ..+++|.|++++.+
T Consensus 124 ~a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A 178 (225)
T PRK06655 124 AADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASA 178 (225)
T ss_pred CCcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEE
Confidence 33479999999999998876442 2575554 22578888887754
No 169
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=47.17 E-value=1.5e+02 Score=38.71 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=61.1
Q ss_pred eEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeec---cCccccCCCceeEEecCCcE
Q 001065 858 SQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPL---LKEYAFSPPAQAIELGSGES 934 (1167)
Q Consensus 858 ~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~---~key~~~p~~~~i~v~~G~~ 934 (1167)
+.++++..-++ -+-|-|..++|-.+...-...+...++...|.+|+||-|.|++- .+-|+ +....+-|++++.
T Consensus 445 ~~~tl~~~idd--~~qi~G~~~~l~dg~~~v~~~~i~~~~~~~~~~v~~GvYtl~~p~G~~~rY~--~~~~YlvV~~~~~ 520 (775)
T PF03272_consen 445 GNVTLTFNIDD--PSQIYGETYSLYDGNKVVYESTITDSTTQLFNDVPPGVYTLRHPRGRNKRYR--PDTNYLVVKETEN 520 (775)
T ss_pred ccEEEEEEcCC--hHHhcCceEEEEcCCeeEEEEEEcCCCceeccCCCCeeEEEEccCCCccccc--cCccEEEEeCCCc
Confidence 77777766543 46788999999888655556677778999999999999999964 34566 5588999999864
Q ss_pred -EEEEEEEEee
Q 001065 935 -REVIFQATRV 944 (1167)
Q Consensus 935 -~~v~~~~~r~ 944 (1167)
.+|.++....
T Consensus 521 ~~~l~yt~~~~ 531 (775)
T PF03272_consen 521 NVTLNYTPLNS 531 (775)
T ss_pred eEEEEeccccC
Confidence 3344444443
No 170
>PRK15294 putative fimbrial outer membrane usher protein SthC; Provisional
Probab=45.38 E-value=1.9e+02 Score=38.41 Aligned_cols=107 Identities=12% Similarity=0.126 Sum_probs=63.2
Q ss_pred EEeCCCCeEEEcccCCc-cEEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEEe-ceEEEEEEEeCCCCcee-ceE
Q 001065 268 AVSDADGKFMFKSVPCG-QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GVK 344 (1167)
Q Consensus 268 ~~TD~~G~f~f~~LppG-~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-Ga~ 344 (1167)
+.||..|.-.++.|.|= .-+|......-+...++.-....+....+.+.+. .|.+. +..+-=++.+++|+|++ |+.
T Consensus 701 ~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvel~~t~~~vvPt~GAiv~~-~F~~~~g~~~l~~l~~~~G~~lPfGa~ 779 (845)
T PRK15294 701 VDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSKTLVPTRGAVVRA-EYKTNIGYKALMVLTRINNLPVPFGAT 779 (845)
T ss_pred CEECCCCeEEeCCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEEECCCCCcCCceEE
Confidence 69999999999998763 2222221011111112222222333333333222 35432 23344456778899885 787
Q ss_pred EEE-c--ceeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 345 ILV-D--GHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 345 V~l-~--G~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
|.+ + |+.+.....+|.--+.+|++ |+.+|+-
T Consensus 780 V~~~~~~g~~~g~Vg~~G~vyl~gl~~~~~L~v~w 814 (845)
T PRK15294 780 VSSLTKPDNHSSFVGDAGQAWLTGLEKQGRLLVKW 814 (845)
T ss_pred EEccCCCCceEEEEcCCCEEEEEcCCCCceEEEEE
Confidence 775 3 67778999999999999986 6777654
No 171
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=44.61 E-value=38 Score=28.45 Aligned_cols=26 Identities=46% Similarity=0.662 Sum_probs=21.8
Q ss_pred eecCcceEEEcCCCCCCEEEEEEEec
Q 001065 979 VTDTSGSYRLRGLHPDTTYVIKVVKK 1004 (1167)
Q Consensus 979 ~Td~~G~~~i~gL~pg~~y~v~~~~~ 1004 (1167)
.++.+-.|.|++|.|+..|.|++++.
T Consensus 52 ~~~~~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 52 VTPSSTSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred ecCCccEEEEeCcCCCCEEEEEEEEE
Confidence 33446789999999999999999875
No 172
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=44.46 E-value=1.7e+02 Score=38.33 Aligned_cols=120 Identities=14% Similarity=-0.002 Sum_probs=70.3
Q ss_pred EEeeeEEEEEEEccCCCCCcccceEEEEEC--CcceeeceeecCCceEEEecCCCcceEEeeccC------ccccCC---
Q 001065 854 CQKLSQISVRIYSKDDAGEPIPSVLLSLSG--DDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLK------EYAFSP--- 922 (1167)
Q Consensus 854 ~~~l~~i~~~v~~~~~~~~pl~gvllslsg--~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~k------ey~~~p--- 922 (1167)
+.+++.+.|.+.++++ .+....|.| +-.+|--+-. |.=+|-.|+|=+=|-.+++. .|+.--
T Consensus 692 ~~~~AGviV~v~~~dd-----~~~~akv~g~~~~~~~~slg~---G~~~llPl~~Y~~~~vev~da~~s~~~~~~Vt~g~ 763 (895)
T PRK15310 692 GEPASGMAVNVESEGD-----EGSSGKVVSVRGSSQPFSLGF---GQQSLLLMEGYNATEVTIEDAGVSSQGMAGVKAGG 763 (895)
T ss_pred CCCcceEEEEeccCCC-----ccceEEEecccccceeeeccC---CceeeEecCCccceeEEEecCCccccceeeecccC
Confidence 3678888888876643 266777777 3122222211 22334344442222222221 111110
Q ss_pred CceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEEeCCCCeeeEEeecCcceEEEc
Q 001065 923 PAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLR 989 (1167)
Q Consensus 923 ~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~ 989 (1167)
......+-+|.-...++.+ .+-|..+|++.+.+|.|+.++.+.= +.. ..||+||-|.+.
T Consensus 764 g~~~~fL~PGnl~~~~v~~-~~~~~yiGr~~~~~G~~l~~a~IlN------~~~-~~td~~GgF~~d 822 (895)
T PRK15310 764 GSRRYFLTPGHLLVHNISA-SMSRLYVGRVLDKDGRPLLDAQPLN------YPF-LSLGPSGRFSLQ 822 (895)
T ss_pred CccceEecCCceEEecccE-EEEEEEEEEEECCCCCCcccceeec------Ccc-ceecCCCCEEEE
Confidence 1122355667666666666 6778889999999999999988642 234 889999999875
No 173
>KOG3306 consensus Predicted membrane protein [Function unknown]
Probab=44.35 E-value=33 Score=35.59 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=32.4
Q ss_pred eEEEE-cceee--eEeCCCceEEECcCCCccEEEEEEeccccccce
Q 001065 343 VKILV-DGHER--SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKL 385 (1167)
Q Consensus 343 a~V~l-~G~~~--~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~ 385 (1167)
+.+.+ +|..+ +.|| |+|..++.+.|+|.|++..+.+.+.++
T Consensus 13 ~~liv~~~~f~gF~~td--~sf~~~d~ptgty~V~V~~s~vi~~p~ 56 (185)
T KOG3306|consen 13 ARLIVNGGEFVGFASTD--GSFGSEDSPTGTYRVEVPSSDVIGHPA 56 (185)
T ss_pred eeeEeccceEEEEEeec--cccccccCCceeEEEEecCcceeecce
Confidence 44555 34444 4777 999999999999999999998877765
No 174
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=44.22 E-value=38 Score=33.20 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=28.2
Q ss_pred eeceEEEEcceeeeEeCCCceEEECcCCCccEEEEEEec
Q 001065 340 VEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVKV 378 (1167)
Q Consensus 340 l~Ga~V~l~G~~~~~TD~dG~y~~~~L~pG~Y~I~~~~~ 378 (1167)
.....|.+||+.+..+...+.+.+ +++||.|+|.++.+
T Consensus 40 ~~~~~v~vdg~~ig~l~~g~y~~~-~v~pG~h~i~~~~~ 77 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNGGYFYV-EVPPGKHTISAKSE 77 (117)
T ss_pred cccceEEECCEEEEEeCCCeEEEE-EECCCcEEEEEecC
Confidence 344567789998888555555554 99999999999665
No 175
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=42.85 E-value=92 Score=29.13 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=29.5
Q ss_pred cceEEEEEeCCCcEEEeEEe---cCCcEEE----eCC-CCCccEEEEEEcC
Q 001065 52 SHVTVELRTLDGLVKESTQC---APNGYYF----IPV-YDKGSFVIKVNGP 94 (1167)
Q Consensus 52 sgv~v~L~~~~G~~~~~t~t---~~nG~y~----~~~-l~~G~Y~l~~~~P 94 (1167)
..+++.|+|++|+.+.+... +.+|.|. +|. ...|.|+|++...
T Consensus 36 ~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 36 SPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp EEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred CceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 57889999999998776544 4577555 433 2359999998874
No 176
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=42.39 E-value=30 Score=33.76 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=26.6
Q ss_pred EecCCCcEEEcccCCccEEEEEEeecccccccCCCceEEeee
Q 001065 531 LTDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQSF 572 (1167)
Q Consensus 531 ~Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~~~ 572 (1167)
+.+..-+++|++|+||+|.|.+.+. .+.+.-|+...
T Consensus 38 ~~~~~~~~~f~~lp~G~YAi~v~hD------~N~NgklD~n~ 73 (112)
T PF09912_consen 38 AKGGTVTITFEDLPPGTYAIAVFHD------ENGNGKLDTNF 73 (112)
T ss_pred cCCCcEEEEECCCCCccEEEEEEEe------CCCCCcCCcCC
Confidence 3466779999999999999999864 13455555544
No 177
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=41.73 E-value=42 Score=29.54 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=30.7
Q ss_pred EEEeCCCCcee-ceEEEE-cceeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 331 RVVDENDMGVE-GVKILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 331 ~V~d~~G~pl~-Ga~V~l-~G~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
++.+++|+||+ ||.|.. +|+.+...+.+|..-|.++++ |+.+|.-
T Consensus 2 ~l~~~~G~~lPfGA~v~~~~g~~~g~Vg~~G~vyl~~~~~~~~L~V~w 49 (68)
T PF13953_consen 2 TLRDADGKPLPFGASVSDEDGNNIGIVGQDGQVYLSGLPPKGTLTVKW 49 (68)
T ss_dssp EEEETTSEE--TT-EEEETTSSEEEEB-GCGEEEEEEE-TCEEEEEES
T ss_pred EEEcCCCCcCCCCcEEEcCCCCEEEEEcCCCEEEEECCCCCcEEEEEE
Confidence 45677888876 788877 677888999999999999874 5555554
No 178
>PRK09828 putative fimbrial outer membrane usher protein; Provisional
Probab=41.30 E-value=2.4e+02 Score=37.61 Aligned_cols=107 Identities=9% Similarity=0.067 Sum_probs=64.5
Q ss_pred EEeCCCCeEEEcccCCccE-EEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ceE
Q 001065 268 AVSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVK 344 (1167)
Q Consensus 268 ~~TD~~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga~ 344 (1167)
..||..|.-.++.|.|=.. +|......-+...++.-....+....+.+.+. .|.+ .+..+-=++.+++|+||+ |+.
T Consensus 718 ~~Td~~G~avVP~l~pY~~N~i~ID~~~LP~dvel~~t~~~vvPt~GAvv~~-~F~~~~g~~~ll~l~~~~G~~lP~Ga~ 796 (865)
T PRK09828 718 STIDRWGYGVTSALSPYRENRVALDINTLENDVELKSTSAVAVPRQGAVVLA-DFETDQGRSAIMNITRSDGKNIPFAAD 796 (865)
T ss_pred ceeCCCCeEEeCCCCCceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEE-EEEeecceEEEEEEECCCCCcCCCceE
Confidence 4789999999999987432 22221011111122222333333333433332 3543 234455567888999986 776
Q ss_pred EEE-cceeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 345 ILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 345 V~l-~G~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
|.. +|+.+...+.+|.--+.++++ |+.+|+-
T Consensus 797 V~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v~w 829 (865)
T PRK09828 797 VYDEQGNVIGNVGQGGQAFVRGIEDQGELRIRW 829 (865)
T ss_pred EECCCCcEEEEEeCCCEEEEEcCCCCceEEEEE
Confidence 665 566778999999999999987 5666655
No 179
>PRK15235 outer membrane fimbrial usher protein SefC; Provisional
Probab=41.05 E-value=2.8e+02 Score=36.67 Aligned_cols=108 Identities=11% Similarity=0.087 Sum_probs=63.0
Q ss_pred EEEeCCCCeEEEcccCCcc-EEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ce
Q 001065 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1167)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga 343 (1167)
...||..|.-.+++|.|=. -+|......=+...++.-....+....+.+.+. .|.+ .+..+--++.+++|+||+ |+
T Consensus 668 ~~~Td~~G~avvp~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~~-~F~~~~g~~~ll~l~~~~G~~lPfGa 746 (814)
T PRK15235 668 GVRTDFRGYTISSYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTEGAIVKA-VYKTSVGTNALIRITRTNGKPLALGT 746 (814)
T ss_pred CCEECCCCeEEeCCCCCceeceEEecccCCCCCeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEEECCCCCcCCCce
Confidence 4789999999999998742 222221011111112222223333333433332 3543 233444567788999986 77
Q ss_pred EEEE-c--c--eeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 344 KILV-D--G--HERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 344 ~V~l-~--G--~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
.|.+ + | +.+...+.+|.--+.+|++ |+.+|+-
T Consensus 747 ~V~~~~~~g~~~~~g~Vg~~G~vyl~gl~~~~~L~v~w 784 (814)
T PRK15235 747 VLSLKNNDGVIQSTSIVGEDGQAYVSGLSGVQKLIASW 784 (814)
T ss_pred EEEecCCCCceeeeEEEcCCCEEEEEcCCCCceEEEEE
Confidence 7776 2 3 3457999999999999987 5666654
No 180
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=40.92 E-value=1.3e+02 Score=30.24 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=37.3
Q ss_pred eceEEEEEEEeCCCCceeceEEEE------c-ce--ee-eEeCCCceEEEC--cCCCccEEEEE
Q 001065 324 TGFSVGGRVVDENDMGVEGVKILV------D-GH--ER-SITDRDGYYKLD--QVTSNRYTIEA 375 (1167)
Q Consensus 324 ~g~sV~G~V~d~~G~pl~Ga~V~l------~-G~--~~-~~TD~dG~y~~~--~L~pG~Y~I~~ 375 (1167)
.+..+.-++.|++|.|+.++.+.+ + .. .. ....++|.|... .+.+|.|.|++
T Consensus 67 ~~~~~~i~~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~~~~G~W~l~l 130 (146)
T PF05751_consen 67 DDNSLTIRLTDPNGAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPLLKKGRWYLRL 130 (146)
T ss_pred cCCeEEEEEEcCCCCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCCCCCccEEEEE
Confidence 344566677888999999999988 1 11 12 356888998884 45789999887
No 181
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=40.42 E-value=60 Score=35.94 Aligned_cols=45 Identities=24% Similarity=0.472 Sum_probs=31.4
Q ss_pred CCCcceEEEEEeCCCcEEEEEE--eCCCceEEEc--c-------ccCceEEEEEEc
Q 001065 146 GGPSNVNVELLSHSGDLISSVI--TSSEGSYLFK--N-------IIPGKYKLRASH 190 (1167)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~~tt--Td~~G~f~f~--~-------l~pG~Y~l~~~~ 190 (1167)
.+...|+|.+++.+|+++++.. .-..|.+.|. + +++|.|++.+.+
T Consensus 126 ~~a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a 181 (230)
T PRK12633 126 GDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSA 181 (230)
T ss_pred CcCcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 4666789999999998876543 3356665554 2 678888887754
No 182
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=39.89 E-value=1.8e+02 Score=32.90 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=31.3
Q ss_pred CCCcceEEEEEeCCCcEEEEEEe--CCCceEE--Ecc-------ccCceEEEEEE
Q 001065 146 GGPSNVNVELLSHSGDLISSVIT--SSEGSYL--FKN-------IIPGKYKLRAS 189 (1167)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~~ttT--d~~G~f~--f~~-------l~pG~Y~l~~~ 189 (1167)
.+...|+|++++.+|+++++..- -..|.+. .++ +++|.|++.+.
T Consensus 138 ~~a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~ 192 (259)
T PRK12812 138 EDSDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAV 192 (259)
T ss_pred CcCceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEE
Confidence 45567999999999988876543 3456544 444 77899998875
No 183
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=39.25 E-value=84 Score=26.37 Aligned_cols=28 Identities=25% Similarity=0.614 Sum_probs=22.5
Q ss_pred eeeecCCeEEEEE---EcCeeEEEEEEeecC
Q 001065 435 VKQTDNNGNFCFE---VPPGEYRLSAMAATP 462 (1167)
Q Consensus 435 ~~~Td~~G~f~f~---L~pG~Y~v~~~~~~~ 462 (1167)
.+..|++|.|++. +..|.|.|++...+.
T Consensus 5 ~~t~~~~G~Ws~t~~~~~dG~y~itv~a~D~ 35 (54)
T PF13754_consen 5 TTTVDSDGNWSFTVPALADGTYTITVTATDA 35 (54)
T ss_pred EEEECCCCcEEEeCCCCCCccEEEEEEEEeC
Confidence 4566899999997 566999999988653
No 184
>PRK15298 fimbrial outer membrane usher protein StiC; Provisional
Probab=39.21 E-value=2.6e+02 Score=37.20 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=61.7
Q ss_pred EEEeCCCCeEEEcccCCcc-EEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ce
Q 001065 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1167)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga 343 (1167)
.+.||..|.-.+++|.|=. -+|......=+...++.-....+....+.+.+ ..|.+ .+..+-=++.+++|+||+ ||
T Consensus 706 ~~~Td~~G~AvvP~l~pY~~N~i~iD~~~LP~dvei~~t~~~vvPt~GAvv~-~~F~~~~g~~~ll~l~~~~G~~lP~Ga 784 (848)
T PRK15298 706 GVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVR-AAYDTHKGYRVLLTLTRSNGEPVPFGA 784 (848)
T ss_pred CCEECCCCeEEeCCCCccceeeEEECCCCCCCCeEecccEEEecccCCeEEE-EEEEEEeeEEEEEEEECCCCCcCCCCc
Confidence 3799999999999998632 23332111101111121122222222333322 23543 233444467788999886 78
Q ss_pred EEEEcc---eeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 344 KILVDG---HERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 344 ~V~l~G---~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
.|.+++ ..+...+.+|.--|.++++ +...++-
T Consensus 785 ~v~~~~~~~~~~g~Vg~~G~vyl~g~~~~~~l~v~w 820 (848)
T PRK15298 785 TASVDGQDANLASIVGDKGQVFLSGLPEEGLLLVNW 820 (848)
T ss_pred EEEEcCCCCeeEEEECCCCEEEEEecCCCceEEEEE
Confidence 887743 2457999999999999986 4555544
No 185
>COG1470 Predicted membrane protein [Function unknown]
Probab=38.80 E-value=8.2e+02 Score=29.96 Aligned_cols=79 Identities=13% Similarity=0.302 Sum_probs=49.0
Q ss_pred ccCCccEEEEEEeecccccccCCCceEEeeeEEEEEecC--CccceeEEEeeeEEEEEecccEEEEEEecCCCeeeEEE-
Q 001065 542 DVLPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVGTN--DVKGVEFVQKGYWLNVISTHDVDAYMTQQDGSHVPLKV- 618 (1167)
Q Consensus 542 ~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~~~~~v~V~~~--~~~~~~F~q~Gy~~~i~~sh~~~~~~~~~~~~~~~~~l- 618 (1167)
++-||+|.+...++ -.|++....+.+... ..-.+.+.+++|.+....+..+-++++..+-...+++|
T Consensus 224 e~t~g~y~~~i~~~----------g~ye~~~~av~l~d~~t~dLkls~~~k~~~ftEl~~s~~~~~i~~~~t~sf~V~Ie 293 (513)
T COG1470 224 EITPGKYVVLIAKK----------GIYEKKKRAVKLNDGETKDLKLSVTEKKSYFTELNSSDIYLEISPSTTASFTVSIE 293 (513)
T ss_pred EecCcceEEEeccc----------cceecceEEEEcCCCcccceeEEEEeccceEEEeecccceeEEccCCceEEEEEEc
Confidence 57899999988743 235666666666543 34557788888888766666666666543332334556
Q ss_pred ccc--eeeEEecCC
Q 001065 619 KKG--SQHICVESP 630 (1167)
Q Consensus 619 ~kG--~~~~c~~~~ 630 (1167)
++| ....|++..
T Consensus 294 N~g~~~d~y~Le~~ 307 (513)
T COG1470 294 NRGKQDDEYALELS 307 (513)
T ss_pred cCCCCCceeEEEec
Confidence 344 346666543
No 186
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=38.79 E-value=1.4e+02 Score=27.56 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=32.2
Q ss_pred CCcceEEEEEeCCCcEEEEEEeCCCceEEEcccc-----CceEEEEEEcCCceeE
Q 001065 147 GPSNVNVELLSHSGDLISSVITSSEGSYLFKNII-----PGKYKLRASHPNLSVE 196 (1167)
Q Consensus 147 plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~-----pG~Y~l~~~~~g~~~~ 196 (1167)
..+|+.|.|.. +|.....+.++ +|.+.+. ++ +|.|+|.+.+-.|...
T Consensus 24 ~~~gs~ValS~-dg~l~G~ai~~-sG~ati~-l~~~it~~~~~tlTit~~n~~t~ 75 (81)
T PF03785_consen 24 DVPGSYVALSQ-DGDLYGKAIVN-SGNATIN-LTNPITDEGTLTLTITAFNYVTY 75 (81)
T ss_dssp SSTT-EEEEEE-TTEEEEEEE-B-TTEEEEE--SS--TT-SEEEEEEE-TTB--E
T ss_pred cCCCcEEEEec-CCEEEEEEEec-CceEEEE-CCcccCCCceEEEEEEEEccEEE
Confidence 34678888854 67888899999 9999887 65 6899999988777643
No 187
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=38.79 E-value=60 Score=37.17 Aligned_cols=43 Identities=19% Similarity=0.455 Sum_probs=31.5
Q ss_pred CCcceEEEEEeCCCcEEEEEEeC----CCceEEEc---------cccCceEEEEEE
Q 001065 147 GPSNVNVELLSHSGDLISSVITS----SEGSYLFK---------NIIPGKYKLRAS 189 (1167)
Q Consensus 147 plaGv~V~L~~~~g~~i~~ttTd----~~G~f~f~---------~l~pG~Y~l~~~ 189 (1167)
....|+|.+++.+|+++++..-+ ..|.+.|. .+++|.|++++.
T Consensus 164 ~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~ 219 (295)
T PRK05842 164 SKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAE 219 (295)
T ss_pred cCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEE
Confidence 34578999999999888765443 34765554 378899998875
No 188
>PRK15193 outer membrane usher protein; Provisional
Probab=37.88 E-value=3.1e+02 Score=36.67 Aligned_cols=107 Identities=13% Similarity=0.176 Sum_probs=60.2
Q ss_pred EEEeCCCCeEEEcccCCcc-EEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEEe-ceEEEEEEEeCCCCcee-ce
Q 001065 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVT-GFSVGGRVVDENDMGVE-GV 343 (1167)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~-g~sV~G~V~d~~G~pl~-Ga 343 (1167)
...||..|.-.++.|.|=. =+|......-+...++.-....+....+.+.+. .|.+. +..+-=++ +.+|+||+ |+
T Consensus 734 ~~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~dvel~~t~~~VvPt~GAvv~~-~F~~~~g~~~ll~l-~~~G~plPfGa 811 (876)
T PRK15193 734 GLKTDWRGYAVVPYATSYRENRIALDAASLKDNVDLENAVVNVVPTKGALVLA-EFNAHVGARALMTL-SHQGIPLPFGA 811 (876)
T ss_pred CCeECCCCeEEECCCCccccceEEECCCCCCCCeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEE-ccCCcCCCCce
Confidence 3799999999999988632 122221011111112222222333333333322 34432 22332234 44799985 77
Q ss_pred EEEE-cceeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 344 KILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 344 ~V~l-~G~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
.|.. +|+.+...+.+|.--+.+|++ |+.+|+-
T Consensus 812 ~V~~~~g~~~g~Vg~~G~vyl~gl~~~~~l~v~w 845 (876)
T PRK15193 812 TVTLDDQHNSGIVDDDGSVYLSGLPAQGVLHVRW 845 (876)
T ss_pred EEECCCCceEEEEcCCCEEEEEccCCCceEEEEE
Confidence 6665 566778999999999999986 5666654
No 189
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=37.14 E-value=2.8e+02 Score=24.12 Aligned_cols=44 Identities=14% Similarity=0.343 Sum_probs=28.5
Q ss_pred ceEEEEEEcCcccccCCcceeEEEecCCCcEEEcccCCcc-EEEEEEee
Q 001065 508 LVTVTLMRLGQKHYDGTEKKTVSLTDDSDQFLFRDVLPGK-YRLEVKRT 555 (1167)
Q Consensus 508 ~~~VtL~~~~~~~~~~~~~~~~~~Td~~G~f~f~~L~PG~-Y~v~~~~~ 555 (1167)
+..|.....+.. .......+......|.+.+|.||+ |.+++...
T Consensus 32 ~y~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~ 76 (85)
T PF00041_consen 32 GYRVEYRSVNST----SDWQEVTVPGNETSYTITGLQPGTTYEFRVRAV 76 (85)
T ss_dssp EEEEEEEETTSS----SEEEEEEEETTSSEEEEESCCTTSEEEEEEEEE
T ss_pred EEEEEEEecccc----eeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEE
Confidence 455555554442 112333445555699999999999 99999853
No 190
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=36.69 E-value=1.1e+02 Score=25.55 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=28.8
Q ss_pred EeEEecCCcEEE--eCCCCCccEEEEEEc--CCCcccCCceEEEEEcC
Q 001065 67 ESTQCAPNGYYF--IPVYDKGSFVIKVNG--PEGWSWNPDKVAVTVDD 110 (1167)
Q Consensus 67 ~~t~t~~nG~y~--~~~l~~G~Y~l~~~~--P~G~~~~p~~~~v~Vd~ 110 (1167)
..++.+.+|.|. ++.+..|.|.+++++ ..|=.-......+.||.
T Consensus 4 ~~~t~~~~G~Ws~t~~~~~dG~y~itv~a~D~AGN~s~~~~~~~tiDt 51 (54)
T PF13754_consen 4 YTTTVDSDGNWSFTVPALADGTYTITVTATDAAGNTSTSSSVTFTIDT 51 (54)
T ss_pred EEEEECCCCcEEEeCCCCCCccEEEEEEEEeCCCCCCCccceeEEEeC
Confidence 345567789877 577788999997665 44544444445555553
No 191
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.14 E-value=2.3e+02 Score=30.51 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=39.6
Q ss_pred cceEEEEEeCCCc--EEEeEEecCCcEEEeCCCCCccEEEEEEcC-CCcccCCceEEEEE
Q 001065 52 SHVTVELRTLDGL--VKESTQCAPNGYYFIPVYDKGSFVIKVNGP-EGWSWNPDKVAVTV 108 (1167)
Q Consensus 52 sgv~v~L~~~~G~--~~~~t~t~~nG~y~~~~l~~G~Y~l~~~~P-~G~~~~p~~~~v~V 108 (1167)
.|+.|++-++.++ ++..-.-.++|.|.|-.+.||++.+-+.+- .+|. ..+...|.+
T Consensus 65 ~gm~VeV~e~fdnnh~Vl~q~~ss~G~ftFta~~~GeH~IC~~s~s~awf-~~aklRvhl 123 (215)
T KOG1690|consen 65 IGMHVEVKETFDNNHVVLSQQYSSEGDFTFTALTPGEHRICIQSNSTAWF-NGAKLRVHL 123 (215)
T ss_pred ceEEEEeecCCCCceEEEeecCCCCCceEEEccCCCceEEEEecccchhh-ccceEEEEE
Confidence 3788888876654 777767778999998888999999976653 3563 433333433
No 192
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=36.07 E-value=1.6e+02 Score=27.49 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=27.7
Q ss_pred cceEEEEEeCCCcEEEeEEecC-CcEEE---eCCCCCccEEEEEEc
Q 001065 52 SHVTVELRTLDGLVKESTQCAP-NGYYF---IPVYDKGSFVIKVNG 93 (1167)
Q Consensus 52 sgv~v~L~~~~G~~~~~t~t~~-nG~y~---~~~l~~G~Y~l~~~~ 93 (1167)
..+++.|.+++|+.+.....+- ||.|. .|- .+|.|.|.+.-
T Consensus 32 ~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~-~~G~~~i~V~~ 76 (93)
T smart00557 32 GELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPT-EPGDYTVTVKF 76 (93)
T ss_pred CcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeC-CCEeEEEEEEE
Confidence 4678888888886655555544 77766 344 67888877664
No 193
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=35.54 E-value=73 Score=35.08 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=29.8
Q ss_pred ccceEEEEEeCCCcEEEeEEe--cCCcEEE--eCC-------CCCccEEEEEEc
Q 001065 51 YSHVTVELRTLDGLVKESTQC--APNGYYF--IPV-------YDKGSFVIKVNG 93 (1167)
Q Consensus 51 ~sgv~v~L~~~~G~~~~~t~t--~~nG~y~--~~~-------l~~G~Y~l~~~~ 93 (1167)
-..++|.++|.+|+++++..- .+.|.+. .+. +++|.|++++.+
T Consensus 121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a 174 (221)
T PRK12634 121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQ 174 (221)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 357899999999999887643 2256533 433 456888887754
No 194
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=35.53 E-value=40 Score=28.84 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=24.0
Q ss_pred cceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEE
Q 001065 149 SNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKL 186 (1167)
Q Consensus 149 aGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l 186 (1167)
+|-+ +.+-.|..-.+.+||++|.-.|. ++|+.|.+
T Consensus 21 ag~~--~~D~tGn~~~~vtid~dG~~~f~-v~~~s~SV 55 (57)
T PF09154_consen 21 AGKT--FYDYTGNSSETVTIDEDGWGEFP-VPPGSVSV 55 (57)
T ss_dssp TTEE--EEETTSSSSSEEEE-TTSEEEEE-E-TTEEEE
T ss_pred CCCE--EEEccCCCCCeEEECCCeEEEEE-ECCCEEEE
Confidence 4444 34545544457889999999999 99999876
No 195
>PRK15316 RatA-like protein; Provisional
Probab=35.32 E-value=70 Score=44.45 Aligned_cols=45 Identities=27% Similarity=0.489 Sum_probs=33.6
Q ss_pred eEEEEEEEccCCCCCcccceEEEEECCcce-eec----------------------------eeecCCceEEEe
Q 001065 858 SQISVRIYSKDDAGEPIPSVLLSLSGDDGY-RNN----------------------------SVSWAGGSFHFD 902 (1167)
Q Consensus 858 ~~i~~~v~~~~~~~~pl~gvllslsg~~~~-r~n----------------------------~~T~~~G~~~f~ 902 (1167)
=+|-++|.-.|..|+|.+++-|+|..+.+| |.| .+|++||+++|.
T Consensus 1595 E~ipi~VtttdA~Gnpv~ntpf~LkR~~s~~R~~~~~~~~~v~vt~~aGaa~~~~~~ss~lYGvTGaDGtltfT 1668 (2683)
T PRK15316 1595 EDAVIRVVTKNAQGNSVPNVPFILRREGSKNRQNAEMINKSITVINAAGASARMNSSSSLLYGVTGADGTTSFT 1668 (2683)
T ss_pred CceeEEEEeeccCCCccCCCceEEeecccccccccccccceeeeeccccceeeccccceeEEeeecCCceEEEE
Confidence 344455544445599999999999999776 656 358899998884
No 196
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=34.21 E-value=1.6e+02 Score=32.33 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=11.0
Q ss_pred EcCeeEEEEEEee
Q 001065 448 VPPGEYRLSAMAA 460 (1167)
Q Consensus 448 L~pG~Y~v~~~~~ 460 (1167)
+++|.|++++...
T Consensus 160 lp~G~Y~~~V~a~ 172 (218)
T PRK09619 160 LQPGQYQLSVVSG 172 (218)
T ss_pred CCCceeEEEEEEe
Confidence 8899999999753
No 197
>PF13115 YtkA: YtkA-like
Probab=33.93 E-value=1.1e+02 Score=27.86 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=26.8
Q ss_pred EeCCCCceeceEEEE-----c--cee-----ee-EeCCCceEEECcC--CCccEEEEE
Q 001065 333 VDENDMGVEGVKILV-----D--GHE-----RS-ITDRDGYYKLDQV--TSNRYTIEA 375 (1167)
Q Consensus 333 ~d~~G~pl~Ga~V~l-----~--G~~-----~~-~TD~dG~y~~~~L--~pG~Y~I~~ 375 (1167)
.+.+|+|+.+|.|.+ + |.. .. .....|.|...-. .+|.|.|++
T Consensus 28 ~~~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m~G~W~i~v 85 (86)
T PF13115_consen 28 VDQGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSMAGTWQITV 85 (86)
T ss_pred ECCCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCCCeeEEEEE
Confidence 567899999999988 2 211 11 2246677776522 457777654
No 198
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.62 E-value=1.1e+02 Score=32.76 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=25.8
Q ss_pred EEEEEEeCCCceEEEccccCceEEEEEE--cCCceeE
Q 001065 162 LISSVITSSEGSYLFKNIIPGKYKLRAS--HPNLSVE 196 (1167)
Q Consensus 162 ~i~~ttTd~~G~f~f~~l~pG~Y~l~~~--~~g~~~~ 196 (1167)
++-+-.=.++|.|+|+.+.||.|+|-.. ..+|...
T Consensus 80 ~Vl~q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~ 116 (215)
T KOG1690|consen 80 VVLSQQYSSEGDFTFTALTPGEHRICIQSNSTAWFNG 116 (215)
T ss_pred EEEeecCCCCCceEEEccCCCceEEEEecccchhhcc
Confidence 4445555689999999999999999763 3466543
No 199
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=32.87 E-value=1.1e+02 Score=26.85 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=23.4
Q ss_pred ceEEEEECCcc--eee---ce-eecCCceEEEecCCCcceEEee
Q 001065 876 SVLLSLSGDDG--YRN---NS-VSWAGGSFHFDNLFPGNFYLRP 913 (1167)
Q Consensus 876 gvllslsg~~~--~r~---n~-~T~~~G~~~f~~L~PG~Y~~~~ 913 (1167)
++-|.|...++ ... +. ..+.+-.+.|..+.||+||++-
T Consensus 25 d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 25 DADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp SEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred CeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 45566666542 111 11 1233466889999999999974
No 200
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=32.19 E-value=2.4e+02 Score=26.32 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=27.6
Q ss_pred cceEEEEEeCCC--cEEEeEEecCCcEEE--eCCCCCccEEEEEE
Q 001065 52 SHVTVELRTLDG--LVKESTQCAPNGYYF--IPVYDKGSFVIKVN 92 (1167)
Q Consensus 52 sgv~v~L~~~~G--~~~~~t~t~~nG~y~--~~~l~~G~Y~l~~~ 92 (1167)
.+.+|-|+..++ ..++++... ||.|. .+.-.|+-|.|.+.
T Consensus 24 ~~~~vyL~~~~~~~~~~ds~~v~-nG~F~f~~~~~~p~~~~l~~~ 67 (106)
T PF14289_consen 24 DGDKVYLYYYDNGKVVIDSVVVK-NGKFSFKGPLDEPGFYYLSIF 67 (106)
T ss_pred CCCEEEEEEeCCCCEEEEEEEEe-CCEEEEEEeCCCCEEEEEEEE
Confidence 477888887653 345666666 99888 45556888888433
No 201
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=32.16 E-value=1.2e+02 Score=28.61 Aligned_cols=82 Identities=20% Similarity=0.279 Sum_probs=46.2
Q ss_pred cCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEE-eCC-CCeeeEEeecCcceEEEcCCCCCCEE
Q 001065 920 FSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEAR-SES-KGYYEETVTDTSGSYRLRGLHPDTTY 997 (1167)
Q Consensus 920 ~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~-~~~-~~~~~~~~Td~~G~~~i~gL~pg~~y 997 (1167)
+.|+...++.. +....|.|..-+..+...++-.++- +-.+.....+. ..+ ...........+-.+.|++|.||..|
T Consensus 3 lgPP~v~v~~~-~~~l~V~i~~P~~~~~~~~~~~~l~-~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y 80 (106)
T PF09294_consen 3 LGPPSVNVSSC-GGSLHVTIKPPMTPLRAGGKNSSLR-DIYPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNY 80 (106)
T ss_dssp E-SSEEEEEEE-TTEEEEEEEESEEEEECSSSEEEHH-HHHGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEE
T ss_pred ecCCEEEEEEC-CCEEEEEEECCCcccccCCCCCcHH-HhCCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCE
Confidence 56777666444 4477777777775541111111111 01124555554 333 32355566667778899999999999
Q ss_pred EEEEEe
Q 001065 998 VIKVVK 1003 (1167)
Q Consensus 998 ~v~~~~ 1003 (1167)
=|+|++
T Consensus 81 Cv~V~~ 86 (106)
T PF09294_consen 81 CVSVQA 86 (106)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 202
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=31.78 E-value=1.7e+02 Score=32.21 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=49.3
Q ss_pred ceEEEecCCCcceEEe-eccCccccCC------CceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEEe
Q 001065 897 GSFHFDNLFPGNFYLR-PLLKEYAFSP------PAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARS 969 (1167)
Q Consensus 897 G~~~f~~L~PG~Y~~~-~~~key~~~p------~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~ 969 (1167)
|++.++--.||+|=.. |-.+--..+| -.+.+.+.+|-+.-+.+--......-+++ .|-.|++-.
T Consensus 1 gkV~v~~qlgG~Y~i~spdaqtRa~~~~g~~l~d~~~~lL~~GSTlwL~~~~~ak~gtt~~t---------qgYvVrtgt 71 (310)
T PF15415_consen 1 GKVQVDFQLGGYYPIMSPDAQTRAVDNNGNDLHDRQIFLLPIGSTLWLFYYDQAKNGTTYYT---------QGYVVRTGT 71 (310)
T ss_pred CceeEeEecCceeeeecccccccccCCCCccccCceeEEccCCCEEEEEEeccccccceeee---------eEEEEEecC
Confidence 4556666677777332 1111111111 13456677787776655444433333332 566777544
Q ss_pred CCCCeeeEEeecCcceEEEcC------CCCCCEEE
Q 001065 970 ESKGYYEETVTDTSGSYRLRG------LHPDTTYV 998 (1167)
Q Consensus 970 ~~~~~~~~~~Td~~G~~~i~g------L~pg~~y~ 998 (1167)
.+-...--..+|+||.+ |+- |.||+||+
T Consensus 72 gG~~~LYPC~~deNG~~-i~~s~tPLyl~aGtY~F 105 (310)
T PF15415_consen 72 GGYNSLYPCQFDENGKY-INSSSTPLYLNAGTYYF 105 (310)
T ss_pred CCcceeeeeEEcCCCcE-EeccCCceEEecceEEE
Confidence 43333344589999998 543 67887655
No 203
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=31.71 E-value=2.4e+02 Score=27.99 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=33.0
Q ss_pred ceeecCCceEEEecCCCcc-eEEeeccCccccCCCceeEEecCCcEEEEEEEEEee
Q 001065 890 NSVSWAGGSFHFDNLFPGN-FYLRPLLKEYAFSPPAQAIELGSGESREVIFQATRV 944 (1167)
Q Consensus 890 n~~T~~~G~~~f~~L~PG~-Y~~~~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~ 944 (1167)
+..|+.+|.|.+..=.+.. -.+..-+.++.-.|.. |+|..++++.|.|+-+--
T Consensus 51 ~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~--Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 51 TATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKE--VTLPPNESKTVTFTIKMP 104 (121)
T ss_pred eeEecCCEEEEECCCCcccCcccCcchHHhccCCcE--EEECCCCEEEEEEEEEcC
Confidence 4689999999986444432 2222223333322223 999999999888776544
No 204
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=31.55 E-value=80 Score=34.97 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=29.5
Q ss_pred ccceEEEEEeCCCcEEEeEEec--CCcEEE--eCC-------CCCccEEEEEEc
Q 001065 51 YSHVTVELRTLDGLVKESTQCA--PNGYYF--IPV-------YDKGSFVIKVNG 93 (1167)
Q Consensus 51 ~sgv~v~L~~~~G~~~~~t~t~--~nG~y~--~~~-------l~~G~Y~l~~~~ 93 (1167)
-..++|.++|.+|+++++..-. +.|.+. .+. +++|.|++++.+
T Consensus 128 a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a 181 (230)
T PRK12633 128 ATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSA 181 (230)
T ss_pred CcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 3479999999999998876442 356433 333 467788777655
No 205
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.07 E-value=5.2e+02 Score=27.79 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.9
Q ss_pred cceeeeecCCeEEEEE--EcCeeEEEEEEeecCCCCCCeeeeCceEEEEE
Q 001065 432 KPQVKQTDNNGNFCFE--VPPGEYRLSAMAATPESSSGILFLPPYADVVV 479 (1167)
Q Consensus 432 ~~~~~~Td~~G~f~f~--L~pG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V 479 (1167)
......||+.|.-.-+ |.||.|.+..++ .|| ....+.+.|
T Consensus 256 pVTsVITnssG~~vTNgqLsaGtYtVTySA------sGY--~DVTqtlvV 297 (301)
T PF06488_consen 256 PVTSVITNSSGNVVTNGQLSAGTYTVTYSA------SGY--ADVTQTLVV 297 (301)
T ss_pred eeEEEEEcCCCcEeecCcccCceEEEEEec------ccc--ccccceEEE
Confidence 3567789999998887 999999999987 775 444444444
No 206
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=31.01 E-value=1.1e+02 Score=28.98 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=17.0
Q ss_pred eEEEcc-ccCceEEEEE---EcCCceeEeecceEEEE
Q 001065 173 SYLFKN-IIPGKYKLRA---SHPNLSVEVRGSTEVEL 205 (1167)
Q Consensus 173 ~f~f~~-l~pG~Y~l~~---~~~g~~~~~~~~~~V~v 205 (1167)
...+.. |+||.|+|.. +.+|... +++..|+|
T Consensus 62 ~~~l~~~l~~G~YtV~wrvvs~DGH~~--~G~~~F~V 96 (97)
T PF04234_consen 62 TVPLPPPLPPGTYTVSWRVVSADGHPV--SGSFSFTV 96 (97)
T ss_dssp EEEESS---SEEEEEEEEEEETTSCEE--EEEEEEEE
T ss_pred EEECCCCCCCceEEEEEEEEecCCCCc--CCEEEEEE
Confidence 344555 8899999975 3444443 34555554
No 207
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=30.89 E-value=5.3e+02 Score=26.76 Aligned_cols=29 Identities=31% Similarity=0.580 Sum_probs=22.8
Q ss_pred ecCcceEEEc------CCCCCCEEEEEEEeccCCC
Q 001065 980 TDTSGSYRLR------GLHPDTTYVIKVVKKDGFG 1008 (1167)
Q Consensus 980 Td~~G~~~i~------gL~pg~~y~v~~~~~~~~~ 1008 (1167)
...+|.|++. .|.+|..|+++|.+.+..|
T Consensus 102 ~~~~~~~~~~yp~~fpsle~~~~YtLtV~a~D~aG 136 (158)
T PF13750_consen 102 NKGNGVYTLEYPRIFPSLEADDSYTLTVSATDKAG 136 (158)
T ss_pred eccCceEEeecccccCCcCCCCeEEEEEEEEecCC
Confidence 3457888874 7889999999999877644
No 208
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=30.89 E-value=1.1e+02 Score=29.96 Aligned_cols=44 Identities=14% Similarity=0.326 Sum_probs=32.6
Q ss_pred cCCceEEEecCCCcceEEeeccCcccc----CCCceeEEecCCcEEEEEEE
Q 001065 894 WAGGSFHFDNLFPGNFYLRPLLKEYAF----SPPAQAIELGSGESREVIFQ 940 (1167)
Q Consensus 894 ~~~G~~~f~~L~PG~Y~~~~~~key~~----~p~~~~i~v~~G~~~~v~~~ 940 (1167)
-++|.|.+.+++||+|.+.. +-.| .+....|+++.||+.=+...
T Consensus 55 l~~g~y~~~~v~pG~h~i~~---~~~~~~~~~~~~l~~~~~~G~~yy~r~~ 102 (117)
T PF11008_consen 55 LKNGGYFYVEVPPGKHTISA---KSEFSSSPGANSLDVTVEAGKTYYVRQD 102 (117)
T ss_pred eCCCeEEEEEECCCcEEEEE---ecCccCCCCccEEEEEEcCCCEEEEEEE
Confidence 45788999999999987765 2222 34888899999998655433
No 209
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=30.24 E-value=1.1e+02 Score=34.46 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=31.0
Q ss_pred ccceEEEEEeCCCcEEEeEEec--CCcE--EEeCC-------CCCccEEEEEEc
Q 001065 51 YSHVTVELRTLDGLVKESTQCA--PNGY--YFIPV-------YDKGSFVIKVNG 93 (1167)
Q Consensus 51 ~sgv~v~L~~~~G~~~~~t~t~--~nG~--y~~~~-------l~~G~Y~l~~~~ 93 (1167)
...++|+++|.+|+++++..-. +.|. |..+. +++|.|++++.+
T Consensus 140 a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A 193 (259)
T PRK12812 140 SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY 193 (259)
T ss_pred CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 4489999999999998876542 2463 44544 568999888764
No 210
>PRK15255 fimbrial outer membrane usher protein StdB; Provisional
Probab=29.98 E-value=5.4e+02 Score=34.20 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=59.7
Q ss_pred EeCCCCeEEEcccCCccE-EEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ceEE
Q 001065 269 VSDADGKFMFKSVPCGQY-ELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GVKI 345 (1167)
Q Consensus 269 ~TD~~G~f~f~~LppG~Y-~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga~V 345 (1167)
.||..|.-.++.|.|=.. +|......-+...++.-....+....+.+.. ..|.. .+..+--++.+++|+||+ ||.|
T Consensus 690 ~Td~~G~avvP~l~pY~~N~i~ID~~~LP~dvei~~t~~~VvP~~GAvv~-~~F~~~~g~~~l~~l~~~~G~~lP~Ga~V 768 (829)
T PRK15255 690 VTNRFGVGVVSAGSSYRRSDISVDVAALPEDVDVSSSVISQVLTEGAVGY-RKIDASQGEQVLGHIRLADGASPPFGALV 768 (829)
T ss_pred ccCCCCEEEeCCCCCceeeeEEECCcCCCCCEEecccEEEEEecCCCEEE-EEEEEecceEEEEEEEcCCCCcCCCcEEE
Confidence 499999999999986321 2222101101111222222233333332222 13442 233444567888999986 7777
Q ss_pred EEc--ceeeeEeCCCceEEECcCCC-c--cEEEE
Q 001065 346 LVD--GHERSITDRDGYYKLDQVTS-N--RYTIE 374 (1167)
Q Consensus 346 ~l~--G~~~~~TD~dG~y~~~~L~p-G--~Y~I~ 374 (1167)
..+ |+.+...+.+|.--+.++.+ + +.+|+
T Consensus 769 ~~~~~g~~~g~Vg~~G~vyl~gl~~~~~~~l~v~ 802 (829)
T PRK15255 769 VSGKTGRTAGMVGDDGLAYLTGLSGEDRRTLNVS 802 (829)
T ss_pred EcCCCCceeEEEcCCCEEEEECCCCCCCeeEEEE
Confidence 653 66778999999999999974 4 44443
No 211
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=29.92 E-value=2.2e+02 Score=26.20 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=30.1
Q ss_pred cccceEEEEEeCCCcEEEeEEecCCcEEEeCC----CCCccEEEEEEcC
Q 001065 50 DYSHVTVELRTLDGLVKESTQCAPNGYYFIPV----YDKGSFVIKVNGP 94 (1167)
Q Consensus 50 ~~sgv~v~L~~~~G~~~~~t~t~~nG~y~~~~----l~~G~Y~l~~~~P 94 (1167)
++.|..|.|. .+|.+.....++ +|.+.+++ -.+|.|.|.+.+-
T Consensus 24 ~~~gs~ValS-~dg~l~G~ai~~-sG~ati~l~~~it~~~~~tlTit~~ 70 (81)
T PF03785_consen 24 DVPGSYVALS-QDGDLYGKAIVN-SGNATINLTNPITDEGTLTLTITAF 70 (81)
T ss_dssp SSTT-EEEEE-ETTEEEEEEE-B-TTEEEEE-SS--TT-SEEEEEEE-T
T ss_pred cCCCcEEEEe-cCCEEEEEEEec-CceEEEECCcccCCCceEEEEEEEE
Confidence 4558888886 689999998888 99999765 2479999988773
No 212
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=29.86 E-value=95 Score=30.31 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=19.1
Q ss_pred CCCceEEEccccCceEEEEEEcC
Q 001065 169 SSEGSYLFKNIIPGKYKLRASHP 191 (1167)
Q Consensus 169 d~~G~f~f~~l~pG~Y~l~~~~~ 191 (1167)
+..-++.|.+|+||+|-|.+-|+
T Consensus 40 ~~~~~~~f~~lp~G~YAi~v~hD 62 (112)
T PF09912_consen 40 GGTVTITFEDLPPGTYAIAVFHD 62 (112)
T ss_pred CCcEEEEECCCCCccEEEEEEEe
Confidence 34558999999999999999764
No 213
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=29.34 E-value=3.6e+02 Score=25.08 Aligned_cols=49 Identities=31% Similarity=0.388 Sum_probs=30.8
Q ss_pred eeEEEEEEEEcCCcccEEEEEEcCC-CcccceeeeecCCeEEEEE---EcCeeEEE
Q 001065 404 SYDICGVVRTVGSGNKVKVALTHGP-DKVKPQVKQTDNNGNFCFE---VPPGEYRL 455 (1167)
Q Consensus 404 ~~~V~G~V~~~~~~~~a~VtL~~~~-~~~~~~~~~Td~~G~f~f~---L~pG~Y~v 455 (1167)
.+.|+|++.... .+..|.|.... +.....++..+ +|+|.|. -.|+.|.|
T Consensus 12 ~~~I~G~i~~~~--~~~~vyL~~~~~~~~~~ds~~v~-nG~F~f~~~~~~p~~~~l 64 (106)
T PF14289_consen 12 QFTIEGKIKGLP--DGDKVYLYYYDNGKVVIDSVVVK-NGKFSFKGPLDEPGFYYL 64 (106)
T ss_pred cEEEEEEEcCCC--CCCEEEEEEeCCCCEEEEEEEEe-CCEEEEEEeCCCCEEEEE
Confidence 578999998541 34555554221 21224455666 9999998 44788888
No 214
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=29.27 E-value=33 Score=32.42 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCCcccceEEEEEeCCCcEEEeE--EecCC-cEEE--eCC-CCCccEEE--EEEcCCC
Q 001065 47 ARLDYSHVTVELRTLDGLVKEST--QCAPN-GYYF--IPV-YDKGSFVI--KVNGPEG 96 (1167)
Q Consensus 47 ~~i~~sgv~v~L~~~~G~~~~~t--~t~~n-G~y~--~~~-l~~G~Y~l--~~~~P~G 96 (1167)
.++......|+|++++|+.+... ..+.+ -.+. ++. |++|.|+| ++...+|
T Consensus 28 e~v~~~~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs~DG 85 (97)
T PF04234_consen 28 EPVEPGFSSVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVSADG 85 (97)
T ss_dssp S---CCC-EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEETTS
T ss_pred CCCccCccEEEEEcCCCceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEecCC
Confidence 34444567888998887554322 22222 2444 677 89999999 4444554
No 215
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=29.23 E-value=1.8e+02 Score=39.36 Aligned_cols=110 Identities=15% Similarity=0.324 Sum_probs=70.1
Q ss_pred cCCcEEEeCCCCCc-cEEEEEEcCCCcccCCceEEEEEcC---CCcCCcceeeEEEeCcEEEEEEEeccCCccccCCCCC
Q 001065 72 APNGYYFIPVYDKG-SFVIKVNGPEGWSWNPDKVAVTVDD---TGCNGNEDINFRFTGFTLLGRVVGAIGGESCLDKGGG 147 (1167)
Q Consensus 72 ~~nG~y~~~~l~~G-~Y~l~~~~P~G~~~~p~~~~v~Vd~---~~~s~~~dinf~~~g~~IsG~V~~~~g~~s~~~~~~p 147 (1167)
+.+|+-.|..++.- -.++....|+.|..++-......|. ...+......|.++-.-++|.-.+. .+|+|
T Consensus 987 ~~~~~a~F~nlP~~~lltm~l~~pesWlVe~v~a~~DLdNI~Le~~~~~v~A~yele~lLleG~c~d~-------~~g~p 1059 (1470)
T KOG1879|consen 987 DSDGVAKFDNLPASPLLTMNLDVPESWLVEAVRAIYDLDNIKLEDTSSDVTAEYELEYLLLEGHCFDK-------VSGQP 1059 (1470)
T ss_pred cccceeeecCCCcCceeEEeecCCCceEeeeccccccchheeeeccCCchheeeehhhhhccceehhh-------ccCCC
Confidence 44676667775433 3555889999999876554332221 1111222234555666667755443 24799
Q ss_pred CcceEEEEEeCCCc-EEEEEEeCCCceEEEccccCceEEEEEE
Q 001065 148 PSNVNVELLSHSGD-LISSVITSSEGSYLFKNIIPGKYKLRAS 189 (1167)
Q Consensus 148 laGv~V~L~~~~g~-~i~~ttTd~~G~f~f~~l~pG~Y~l~~~ 189 (1167)
+.|+.++|-+.++. .+.+.+--.=|.|+|. .-||-+.++..
T Consensus 1060 prGlql~Lgt~~~p~i~DTiVManlGYfQlK-anPG~W~L~lr 1101 (1470)
T KOG1879|consen 1060 PRGLQLTLGTSANPHIVDTIVMANLGYFQLK-ANPGAWILRLR 1101 (1470)
T ss_pred CCceEEEeccCCCCeeeeeEEEeccceeEEe-cCCcceEEEec
Confidence 99999999776653 3445555667999999 88998888764
No 216
>KOG3306 consensus Predicted membrane protein [Function unknown]
Probab=29.05 E-value=1.4e+02 Score=31.17 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=36.6
Q ss_pred EEEEeCCCcEEEeEEecCCcEEEeCCCCCccEEEEEEcCCCcccCCceEEEE
Q 001065 56 VELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDKVAVT 107 (1167)
Q Consensus 56 v~L~~~~G~~~~~t~t~~nG~y~~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~ 107 (1167)
+.|.=-+|..+.-..|+ |.|.....+-|+|.|++-+|+ +.++|..++++
T Consensus 13 ~~liv~~~~f~gF~~td--~sf~~~d~ptgty~V~V~~s~-vi~~p~rv~i~ 61 (185)
T KOG3306|consen 13 ARLIVNGGEFVGFASTD--GSFGSEDSPTGTYRVEVPSSD-VIGHPARVSIT 61 (185)
T ss_pred eeeEeccceEEEEEeec--cccccccCCceeEEEEecCcc-eeecceEEEee
Confidence 34443456666655554 999988889999999999998 88888776644
No 217
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=28.82 E-value=63 Score=28.41 Aligned_cols=47 Identities=30% Similarity=0.415 Sum_probs=29.6
Q ss_pred EEEcCCCCccC-ccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 951 TITLLSGQPKD-GVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 951 ~V~~~~g~p~~-gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
+++.-+|+|+| |+.|.- .++ ........+|...|+++.+.....|+.
T Consensus 2 ~l~~~~G~~lPfGA~v~~--~~g--~~~g~Vg~~G~vyl~~~~~~~~L~V~w 49 (68)
T PF13953_consen 2 TLRDADGKPLPFGASVSD--EDG--NNIGIVGQDGQVYLSGLPPKGTLTVKW 49 (68)
T ss_dssp EEEETTSEE--TT-EEEE--TTS--SEEEEB-GCGEEEEEEE-TCEEEEEES
T ss_pred EEEcCCCCcCCCCcEEEc--CCC--CEEEEEcCCCEEEEECCCCCcEEEEEE
Confidence 45677899988 888773 332 255788999999999998776444433
No 218
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=28.72 E-value=1.6e+02 Score=26.80 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=30.2
Q ss_pred eceEEEEcceeeeEeCCCceEEECcCCCcc---EEEEEE
Q 001065 341 EGVKILVDGHERSITDRDGYYKLDQVTSNR---YTIEAV 376 (1167)
Q Consensus 341 ~Ga~V~l~G~~~~~TD~dG~y~~~~L~pG~---Y~I~~~ 376 (1167)
++|++.+||+...-++..=.|.=.+|++|. |++++.
T Consensus 11 adAkl~v~G~~t~~~G~~R~F~T~~L~~G~~y~Y~v~a~ 49 (75)
T TIGR03000 11 ADAKLKVDGKETNGTGTVRTFTTPPLEAGKEYEYTVTAE 49 (75)
T ss_pred CCCEEEECCeEcccCccEEEEECCCCCCCCEEEEEEEEE
Confidence 789999999988777888889999999995 666654
No 219
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=27.90 E-value=1.1e+02 Score=34.99 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=30.0
Q ss_pred ccceEEEEEeCCCcEEEeEEecC----CcE--EEeCC-------CCCccEEEEEEc
Q 001065 51 YSHVTVELRTLDGLVKESTQCAP----NGY--YFIPV-------YDKGSFVIKVNG 93 (1167)
Q Consensus 51 ~sgv~v~L~~~~G~~~~~t~t~~----nG~--y~~~~-------l~~G~Y~l~~~~ 93 (1167)
.+.++|.++|.+|+++++..-.+ .|. |.-+. +++|.|++++.+
T Consensus 165 a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a 220 (295)
T PRK05842 165 KGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEY 220 (295)
T ss_pred CceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 35799999999999988865432 365 33332 567888887653
No 220
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=27.73 E-value=1.9e+02 Score=27.40 Aligned_cols=31 Identities=19% Similarity=0.462 Sum_probs=19.6
Q ss_pred eccCccccCCCceeEEecCCcEEEEEEEEEeee
Q 001065 913 PLLKEYAFSPPAQAIELGSGESREVIFQATRVA 945 (1167)
Q Consensus 913 ~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~ 945 (1167)
-.++++.|+|+ .|+++.|+..+++|++.-..
T Consensus 25 I~~~~~~f~P~--~i~v~~G~~v~l~~~N~~~~ 55 (104)
T PF13473_consen 25 ITVTDFGFSPS--TITVKAGQPVTLTFTNNDSR 55 (104)
T ss_dssp -----EEEES---EEEEETTCEEEEEEEE-SSS
T ss_pred ccccCCeEecC--EEEEcCCCeEEEEEEECCCC
Confidence 34778888876 56999999999998876443
No 221
>PF13115 YtkA: YtkA-like
Probab=27.51 E-value=4.6e+02 Score=23.65 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=25.1
Q ss_pred CCCCcceEEEEE--eCC--C----cEEEEEEeCCCceEEEccc--cCceEEEEE
Q 001065 145 GGGPSNVNVELL--SHS--G----DLISSVITSSEGSYLFKNI--IPGKYKLRA 188 (1167)
Q Consensus 145 ~~plaGv~V~L~--~~~--g----~~i~~ttTd~~G~f~f~~l--~pG~Y~l~~ 188 (1167)
+.|+.++.|++. ... | ...........|.|...-. .+|.|.|.+
T Consensus 32 g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m~G~W~i~v 85 (86)
T PF13115_consen 32 GKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSMAGTWQITV 85 (86)
T ss_pred CCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCCCeeEEEEE
Confidence 688888877764 332 2 1222333346777777622 367777764
No 222
>PRK15198 outer membrane usher protein FimD; Provisional
Probab=27.30 E-value=5.3e+02 Score=34.44 Aligned_cols=107 Identities=14% Similarity=0.091 Sum_probs=60.1
Q ss_pred EEEeCCCCeEEEcccCCcc-EEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEE-eceEEEEEEEeCCCCcee-ce
Q 001065 267 HAVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQV-TGFSVGGRVVDENDMGVE-GV 343 (1167)
Q Consensus 267 ~~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~-~g~sV~G~V~d~~G~pl~-Ga 343 (1167)
.+.||..|.-.++.|.|=. =+|......-+...++.-....+....+.+.+. .|.+ .+..+--++.. +|+||+ |+
T Consensus 714 ~~~Td~~G~AvVp~l~pY~~N~i~iD~~~LP~nvei~~t~~~vvPt~GAvv~v-~F~~~~g~~~ll~~~~-~G~~lP~Ga 791 (860)
T PRK15198 714 GVKTDWRGYAVMPYATVYRYNRVALDTNTMGNSTDVENNVSSVVPTQGALVRA-NFDTRIGVRALITVTQ-GGKPVPFGA 791 (860)
T ss_pred CCEECCCCeEEeCCCCcceeeeEEECCcCCCCCeEecccEEEEEecCCcEEEE-EEEEeeeeEEEEEEcc-CCCCCCCce
Confidence 3799999999999998632 122221011111112222223333333333322 3443 22233333444 698886 67
Q ss_pred EEEE-cceeeeEeCCCceEEECcCCC-ccEEEEE
Q 001065 344 KILV-DGHERSITDRDGYYKLDQVTS-NRYTIEA 375 (1167)
Q Consensus 344 ~V~l-~G~~~~~TD~dG~y~~~~L~p-G~Y~I~~ 375 (1167)
.|.. +|..+...+.+|.--+.+|++ |..+|+.
T Consensus 792 ~V~~~~~~~~g~Vg~~G~vyl~gl~~~~~l~v~w 825 (860)
T PRK15198 792 LVRETSSGITSMVGDDGQIYLSGLPLSGELLIQW 825 (860)
T ss_pred EEECCCCcEEEEECCCCEEEEEcCCCCceEEEEE
Confidence 6655 566778999999999999986 5666654
No 223
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.17 E-value=1.3e+02 Score=32.21 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=31.9
Q ss_pred EEeCCC--cEEEEEEeCCCceEEE-ccccCceEEEEEEcCCceeE
Q 001065 155 LLSHSG--DLISSVITSSEGSYLF-KNIIPGKYKLRASHPNLSVE 196 (1167)
Q Consensus 155 L~~~~g--~~i~~ttTd~~G~f~f-~~l~pG~Y~l~~~~~g~~~~ 196 (1167)
|.+..| -.+.+..||+.|.-.- ..|.||.|.+..++.||.-.
T Consensus 247 LKdSkGaDVpVTsVITnssG~~vTNgqLsaGtYtVTySAsGY~DV 291 (301)
T PF06488_consen 247 LKDSKGADVPVTSVITNSSGNVVTNGQLSAGTYTVTYSASGYADV 291 (301)
T ss_pred cccCCCCcceeEEEEEcCCCcEeecCcccCceEEEEEeccccccc
Confidence 344445 3466888999998654 36899999999999999854
No 224
>PRK10301 hypothetical protein; Provisional
Probab=26.58 E-value=1.2e+02 Score=30.18 Aligned_cols=49 Identities=8% Similarity=0.175 Sum_probs=28.9
Q ss_pred CcccceEEEEEeCCCcEEEeEE--ec-CCcE-EEeC---CCCCccEEEE--EEcCCCc
Q 001065 49 LDYSHVTVELRTLDGLVKESTQ--CA-PNGY-YFIP---VYDKGSFVIK--VNGPEGW 97 (1167)
Q Consensus 49 i~~sgv~v~L~~~~G~~~~~t~--t~-~nG~-y~~~---~l~~G~Y~l~--~~~P~G~ 97 (1167)
+......|+|.+.+|..+.... .+ .++. +.++ .|.+|.|+|+ +...+|.
T Consensus 56 v~~~~s~i~v~~~~g~~v~~~~~~~~~~~~~~~~v~l~~~L~~G~YtV~Wrvvs~DGH 113 (124)
T PRK10301 56 IEPGFSGATITGPKQENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGH 113 (124)
T ss_pred ccccccEEEEEcCCCCEeccCCccccCCCCcEEEEECCCCCCCccEEEEEEEEecCCC
Confidence 3333446888888887654432 22 2453 4443 3789999994 4445543
No 225
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.24 E-value=1.5e+02 Score=31.74 Aligned_cols=46 Identities=28% Similarity=0.387 Sum_probs=40.4
Q ss_pred CCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcCC
Q 001065 147 GPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPN 192 (1167)
Q Consensus 147 plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g 192 (1167)
+-.|+.+++..++|+.+....-++.|+|.|.--.+|.|++-+..+-
T Consensus 53 g~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~~ 98 (201)
T KOG1692|consen 53 GFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNKM 98 (201)
T ss_pred CccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCCC
Confidence 6678999999999988888888999999999888999999987643
No 226
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=25.56 E-value=1.1e+03 Score=27.19 Aligned_cols=199 Identities=15% Similarity=0.280 Sum_probs=0.0
Q ss_pred cc-CCccEEEEEE---------EecCCeEEEecCceEEEE-EeccceeeeeeeEEeceEEEEEEEeCCCCceeceEEEEc
Q 001065 280 SV-PCGQYELVPH---------YKGENTVFDVSPSLVSMS-VRHQHVTVPEKFQVTGFSVGGRVVDENDMGVEGVKILVD 348 (1167)
Q Consensus 280 ~L-ppG~Y~v~~~---------~~~~~~~~~~~P~~~~vt-V~~~~~~l~~~f~~~g~sV~G~V~d~~G~pl~Ga~V~l~ 348 (1167)
.| .-|.|.+.+. .....+..+..|..+.+. +..+...-...+.... .++|.+.. -.+-.-+.+.++
T Consensus 7 ~l~~d~~~~v~vt~tD~aGN~~~~t~~~~vDt~~P~v~i~~~~~~~~~~~~~~~~~~-t~s~tvs~--~~~g~~v~v~~~ 83 (317)
T PF13753_consen 7 SLSADGTYTVSVTVTDAAGNTSTATQSITVDTTAPTVTITSIADDDIINGDEATNTV-TFSGTVSG--AEPGSTVTVTIN 83 (317)
T ss_pred hccCCCcEEEEEEEEeCCCCeeeeeEEEEEecCCCceeeecccCCCccccceeeeee-EEEEEecC--CCCCCEEEEEEC
Q ss_pred ceee-eEeCCCceEEECcCC-----CccEEEEEE-------------eccccccce----eeEEEc-CCcceeceEE--E
Q 001065 349 GHER-SITDRDGYYKLDQVT-----SNRYTIEAV-------------KVHYKFNKL----KEYMVL-PNMASIADIK--A 402 (1167)
Q Consensus 349 G~~~-~~TD~dG~y~~~~L~-----pG~Y~I~~~-------------~~~y~~~~~----~~v~v~-p~~~~i~dI~--~ 402 (1167)
|... ...+++|.|.+.--+ .|.|+|++. ...|..+.. +.+.+. .....+.+.. .
T Consensus 84 g~~~t~~~~~~G~ws~t~~~~~~l~~g~~ti~v~~~tD~aGN~~t~~s~~~~vDt~~~~~p~vti~~~~~~~~~~~~~~~ 163 (317)
T PF13753_consen 84 GTTGTLTADADGNWSVTVTPSDDLPDGDYTITVTTVTDAAGNTSTAASQTFTVDTTAPTAPTVTITGISDDNIINGAEST 163 (317)
T ss_pred CEEEEEEEecCCcEEEeeccccccccCcceeEEEEEEccCCccccccccccccccccccccccceecccCCceeecccee
Q ss_pred EeeEEEEEEEEcCCcccEEEEEEcCCCcccceeeeecCCeEEEEEEcC--------eeEEEEEEeecCCCCCCeeeeCce
Q 001065 403 ISYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPP--------GEYRLSAMAATPESSSGILFLPPY 474 (1167)
Q Consensus 403 ~~~~V~G~V~~~~~~~~a~VtL~~~~~~~~~~~~~Td~~G~f~f~L~p--------G~Y~v~~~~~~~~~~~G~~~~p~~ 474 (1167)
..+.++|.+..........+++ ++.. .......+|.|.+.+.| |.|++.+...+.-...+ ....
T Consensus 164 ~t~t~sg~v~~~~~~d~v~vt~-~G~~----~~~~~~~~g~~t~~~~~~~~~~~~d~~~~v~v~~tD~AGN~~---~t~s 235 (317)
T PF13753_consen 164 VTVTFSGTVTGFDAGDTVTVTI-NGTT----YTTTVGADGTWTVTVTPSDLAGLADGTYTVTVTVTDAAGNTA---GTAS 235 (317)
T ss_pred ecccccccceeeeeceeEEEee-cccc----cceeecCCCcccccccccccccccCceEEEEEEeeecccCcc---cccc
Q ss_pred EEEEEcCcccceEEE
Q 001065 475 ADVVVKSPLLNIEFS 489 (1167)
Q Consensus 475 ~~V~V~~p~~~I~f~ 489 (1167)
..++++.....|.+.
T Consensus 236 ~~~tvDt~~ptiti~ 250 (317)
T PF13753_consen 236 QTFTVDTTAPTITID 250 (317)
T ss_pred eeEEEecccceeEee
No 227
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=25.55 E-value=3.2e+02 Score=30.93 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=31.1
Q ss_pred ccCccEEEEEeCC-CCeeeEEeecCc-ceEE-Ec--CCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSES-KGYYEETVTDTS-GSYR-LR--GLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~-~~~~~~~~Td~~-G~~~-i~--gL~pg~~y~v~~~~~~ 1005 (1167)
++.||.|.+...+ .........+.+ |.|. .. -++||..|++++..++
T Consensus 59 ~v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~~~~~~~~~~G~~Y~L~V~~~~ 110 (298)
T PF14054_consen 59 PVSGATVTIYEDGQGNEYLFEESSNNDGVYYSSNSFRGRPGRTYRLEVETPG 110 (298)
T ss_pred ccCCcEEEEEeCCCcceEeecccCCCcceEEecccccccCCCEEEEEEEECC
Confidence 3899999995443 322222223332 8888 54 3679999999999853
No 228
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=25.21 E-value=1.6e+02 Score=32.51 Aligned_cols=44 Identities=25% Similarity=0.483 Sum_probs=29.2
Q ss_pred CCcceEEEEEeCCCcEEEEEE--eCCCceEEEc--c-------ccCceEEEEEEc
Q 001065 147 GPSNVNVELLSHSGDLISSVI--TSSEGSYLFK--N-------IIPGKYKLRASH 190 (1167)
Q Consensus 147 plaGv~V~L~~~~g~~i~~tt--Td~~G~f~f~--~-------l~pG~Y~l~~~~ 190 (1167)
+...|+|++++.+|+++++.. .-+.|.+.|. + +++|.|++.+.+
T Consensus 120 ~a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a 174 (221)
T PRK12634 120 SAGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQ 174 (221)
T ss_pred cCCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 346789999999998776542 3345665443 2 667888877643
No 229
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.12 E-value=1e+02 Score=33.07 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=24.7
Q ss_pred eEEEEEeCCCcEEEeEEecCCcEEEeCCCCCccEEEEEEc
Q 001065 54 VTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNG 93 (1167)
Q Consensus 54 v~v~L~~~~G~~~~~t~t~~nG~y~~~~l~~G~Y~l~~~~ 93 (1167)
|.+.+.+|+|+++..-.-.-.+.|.+..-.+|.|..-++.
T Consensus 61 VD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~fCFsN 100 (209)
T KOG1693|consen 61 VDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYTFCFSN 100 (209)
T ss_pred eEEEEECCCCCEEeeccccccccEEEEEecceEEEEEecC
Confidence 4456666777776664333356666555567777776665
No 230
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=24.56 E-value=1.1e+02 Score=39.45 Aligned_cols=48 Identities=31% Similarity=0.441 Sum_probs=0.0
Q ss_pred CCCCeEEEEEeccchhhhhcccCceeEEEEeCCCceEEeC-CCCCCceEEEEEcCCCeE
Q 001065 786 PLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGG-PLYDDITYNVEASKPGYY 843 (1167)
Q Consensus 786 ~l~gv~i~i~~~~~~~~~~~~~g~~~~~~~Td~~G~f~~~-~L~~~~~y~i~a~k~gy~ 843 (1167)
||+++.|.++... ..+.+.+|+.||.-.+. |-+.+...+|+|+|+||+
T Consensus 15 pl~~A~V~V~~N~----------t~~~s~~t~~dG~~~l~~~yrlg~~l~v~a~k~gyv 63 (807)
T PF10577_consen 15 PLSDASVEVFGNQ----------TLTASGTTGNDGVVLLKFPYRLGTWLIVTASKDGYV 63 (807)
T ss_pred cCCCCeEEEEece----------eEeecceecCCceEEEEEeccCCCeEEEEEecCCcc
No 231
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=24.39 E-value=4e+02 Score=24.73 Aligned_cols=43 Identities=21% Similarity=0.472 Sum_probs=25.7
Q ss_pred cccEEEEEEcCCCcccceeeeecCCeEEEEE---EcCeeEEEEEEe
Q 001065 417 GNKVKVALTHGPDKVKPQVKQTDNNGNFCFE---VPPGEYRLSAMA 459 (1167)
Q Consensus 417 ~~~a~VtL~~~~~~~~~~~~~Td~~G~f~f~---L~pG~Y~v~~~~ 459 (1167)
.....|.+....+........-..||.|.+. -.+|.|+|.+..
T Consensus 31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~ 76 (93)
T smart00557 31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKF 76 (93)
T ss_pred CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEE
Confidence 3455566654333221233444567888887 445999999887
No 232
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=24.19 E-value=1.6e+03 Score=28.89 Aligned_cols=198 Identities=18% Similarity=0.222 Sum_probs=99.5
Q ss_pred cceeeeEeC--CCceEEECcCCCccEEEEEEecc-c---ccccee--eEEEcCCcce-eceEEEE--eeEEEEEEEEc--
Q 001065 348 DGHERSITD--RDGYYKLDQVTSNRYTIEAVKVH-Y---KFNKLK--EYMVLPNMAS-IADIKAI--SYDICGVVRTV-- 414 (1167)
Q Consensus 348 ~G~~~~~TD--~dG~y~~~~L~pG~Y~I~~~~~~-y---~~~~~~--~v~v~p~~~~-i~dI~~~--~~~V~G~V~~~-- 414 (1167)
||+.+..|| .+=+|.|..-.+|.|+|++.+-+ | .++... .+.+..-.+. +..+... ..-++|.....
T Consensus 425 ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~ 504 (667)
T PRK14081 425 DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEV 504 (667)
T ss_pred CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEE
Confidence 888876665 66789998899999999876422 2 123221 2233221222 2222222 23455543311
Q ss_pred --CCcccEEEEEE-cCCCcccceeeeecCCeEEEEE-EcCeeEEEEEEeecCCCCCCeeeeCceEEEEEc--CcccceEE
Q 001065 415 --GSGNKVKVALT-HGPDKVKPQVKQTDNNGNFCFE-VPPGEYRLSAMAATPESSSGILFLPPYADVVVK--SPLLNIEF 488 (1167)
Q Consensus 415 --~~~~~a~VtL~-~~~~~~~~~~~~Td~~G~f~f~-L~pG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V~--~p~~~I~f 488 (1167)
.+..+.-.... ..++.. ...+-=-....|+|. .-+|.|+|.+...+-....+|- .-+++.+.|. .|+.+...
T Consensus 505 ~~~~~k~v~y~y~~~~NG~~-v~~t~Ys~~~~ysf~P~~~GkY~I~V~aKn~~s~~~~D-~~k~v~~~V~e~~pi~nt~~ 582 (667)
T PRK14081 505 IIQNTKDVLIKYILKINGHK-VEETDYIKNKKYKFIPKCSGKYTIEVLAKNIKSTEEYD-SKKEVKFYVREALPITNTKI 582 (667)
T ss_pred EEeCCCeEEEEEEEEECCEE-EEEeeccccceEEEeecCCceEEEEEEEcccccccccc-cceEEEEEEcCCCCceeeEE
Confidence 11122222211 122221 112222356789999 9999999999886543333321 2345667773 46766554
Q ss_pred EEeeeEEEEEEeeccCCCCceEEEEEEcCccc-------ccCCcceeEEEecCCCcEEEcccCCccEEEEEEee
Q 001065 489 SQALVNVLGNVACKERCGPLVTVTLMRLGQKH-------YDGTEKKTVSLTDDSDQFLFRDVLPGKYRLEVKRT 555 (1167)
Q Consensus 489 ~q~~a~V~G~V~~~~~~~~~~~VtL~~~~~~~-------~~~~~~~~~~~Td~~G~f~f~~L~PG~Y~v~~~~~ 555 (1167)
.-..+. +. |...++++....+|.. +.+++-.-++-=....-|+|.--..|.|+|-+-.-
T Consensus 583 ~~~~~~----~~----~n~~~t~~~~~~gg~~v~Yef~v~~~g~w~~vq~ys~k~~ysf~p~~~g~Y~ilvl~k 648 (667)
T PRK14081 583 KTSKKK----FK----CNEEVTFSVKSEGGKDVCYEFYIMEKGEWKLVQKYSRKNYYSFMPFNKGKYKVLVLCK 648 (667)
T ss_pred Eeecce----EE----cCCeEEEEEEccCCCcEEEEEEEEECCcEEEEeeccccCceEEEeccCCcEEEEEEEe
Confidence 432221 11 2223333333222221 00111111111145678999999999999988643
No 233
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=23.94 E-value=1.4e+02 Score=27.14 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=37.7
Q ss_pred eEEeecCcceEEEcCCCCCCEEEEEEEeccCC-CCcceeecCCceEEEEecCcccccceE
Q 001065 976 EETVTDTSGSYRLRGLHPDTTYVIKVVKKDGF-GSTKIERASPESVTVKVGSGDIKGLDF 1034 (1167)
Q Consensus 976 ~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~-~~~~i~~~~p~~~~v~v~~~d~~~~~f 1034 (1167)
+...+...=+|+=++|.+|..|.-+++..-.. | |..+...+|.+...|...++|
T Consensus 21 ~t~~~G~~R~F~T~~L~~G~~y~Y~v~a~~~~dG-----~~~t~~~~V~vrAGd~~~v~f 75 (75)
T TIGR03000 21 ETNGTGTVRTFTTPPLEAGKEYEYTVTAEYDRDG-----RILTRTRTVVVRAGDTVTVDF 75 (75)
T ss_pred EcccCccEEEEECCCCCCCCEEEEEEEEEEecCC-----cEEEEEEEEEEcCCceEEeeC
Confidence 33445666689999999999998888863211 2 334567788887888777665
No 234
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=23.40 E-value=2e+02 Score=24.60 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=21.7
Q ss_pred cCcceEEEcCCCCCCEEEEEEEecc
Q 001065 981 DTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 981 d~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.....|.|.+|.|+..|.+++.+..
T Consensus 54 ~~~~~~~i~~l~p~~~Y~~~v~a~~ 78 (93)
T cd00063 54 GSETSYTLTGLKPGTEYEFRVRAVN 78 (93)
T ss_pred CcccEEEEccccCCCEEEEEEEEEC
Confidence 3667899999999999999999754
No 235
>PRK15314 outer membrane protein RatB; Provisional
Probab=22.99 E-value=1e+02 Score=43.00 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=39.7
Q ss_pred CCCceEEeCCCCCCceEEEEEcCCCeEEeeeCCc---------eeEE------EeeeE---EEEEEEccCCCCCcccceE
Q 001065 817 GADGSFIGGPLYDDITYNVEASKPGYYLRQVGPN---------SFSC------QKLSQ---ISVRIYSKDDAGEPIPSVL 878 (1167)
Q Consensus 817 d~~G~f~~~~L~~~~~y~i~a~k~gy~~~~~~~~---------~f~~------~~l~~---i~~~v~~~~~~~~pl~gvl 878 (1167)
...+.|.+=.|..+....-+.+...+.+--.++. .|.+ .|+|+ +.|+|.|.+ |+|++++-
T Consensus 1836 ~st~yyQ~inL~TG~~~t~t~st~~lqlCL~~p~~~sItLtS~a~d~~k~aavAKKGe~iPltVTVkd~~--G~P~an~~ 1913 (2435)
T PRK15314 1836 HSDSQFQYVRLSDNNTLTTKANTATAQLCLAKRRDLSIELTSSDMDADKGAPVAKKGESLPLTVTVRDGS--GTPQPNTA 1913 (2435)
T ss_pred cccceEEEEEcccCCceeeccCchhhheeecCCCcceeEeeccccccccccchhccCCccceEEEEecCC--CCccCCce
Confidence 3456666666665444444444444443322221 1211 13343 467777765 99999999
Q ss_pred EEEECCcce
Q 001065 879 LSLSGDDGY 887 (1167)
Q Consensus 879 lslsg~~~~ 887 (1167)
|.|++++.+
T Consensus 1914 v~L~Rg~s~ 1922 (2435)
T PRK15314 1914 IRLGRTLSI 1922 (2435)
T ss_pred EEEeccccc
Confidence 999998654
No 236
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=22.87 E-value=4.5e+02 Score=32.45 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=31.9
Q ss_pred eEEEEEEEeCCCCceeceEEEEcceeeeEeCCCceEEECcCCCccEEEEEEe
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHERSITDRDGYYKLDQVTSNRYTIEAVK 377 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~~~~TD~dG~y~~~~L~pG~Y~I~~~~ 377 (1167)
..|+.+|.|.+|+.++.....|+.... .=...+.++.+|+|+|.++.
T Consensus 341 ~~vta~V~d~~g~~~~~~~~~v~d~s~-----~vtL~Ls~~~AG~y~Lvv~~ 387 (478)
T PRK13211 341 MNVEATVYNHDGEALGSKSQTVNDGSQ-----SVSLDLSKLKAGHHMLVVKA 387 (478)
T ss_pred eEEEEEEEcCCCCeeeeeeEEecCCce-----eEEEecccCCCceEEEEEEE
Confidence 467888888888888887776632211 01244568899999988765
No 237
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=22.85 E-value=1e+03 Score=26.07 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEcCeeEEEEEEeecCCCCCCe--eeeCceEEEEE
Q 001065 445 CFEVPPGEYRLSAMAATPESSSGI--LFLPPYADVVV 479 (1167)
Q Consensus 445 ~f~L~pG~Y~v~~~~~~~~~~~G~--~~~p~~~~V~V 479 (1167)
.+.|++|.|+|++... .....|| -|.-.+.+++|
T Consensus 59 ~i~L~~G~Ytv~A~~g-~~~~~~~d~pyy~G~~~f~I 94 (235)
T PF14900_consen 59 SIELPVGSYTVKASYG-DNVAAGFDKPYYEGSTTFTI 94 (235)
T ss_pred eEeecCCcEEEEEEcC-CCccccccCceeecceeEEE
Confidence 4669999999999943 2233332 12233447777
No 238
>PRK15315 outer membrane protein RatA; Provisional
Probab=22.75 E-value=1.7e+02 Score=40.21 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=20.1
Q ss_pred EEEEEccCCCCCcccceEEEEECCcce
Q 001065 861 SVRIYSKDDAGEPIPSVLLSLSGDDGY 887 (1167)
Q Consensus 861 ~~~v~~~~~~~~pl~gvllslsg~~~~ 887 (1167)
.|+|.|. .|+|+++|.|.|+.++.|
T Consensus 1602 TVTV~ds--aG~P~~~~~~~ltRg~a~ 1626 (1865)
T PRK15315 1602 TVTVTND--AGQPQAGVAVLLTRDYAY 1626 (1865)
T ss_pred EEEEEcC--CCCccCCceEEEeccccc
Confidence 4566655 499999999999998765
No 239
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=22.55 E-value=7.5e+02 Score=24.48 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=29.3
Q ss_pred eEEeeccCccccCCCceeE--EecCCcEEEEEEEEEeee
Q 001065 909 FYLRPLLKEYAFSPPAQAI--ELGSGESREVIFQATRVA 945 (1167)
Q Consensus 909 Y~~~~~~key~~~p~~~~i--~v~~G~~~~v~~~~~r~~ 945 (1167)
|.+.|++.+...+...-.| .++.||+.+++++-++..
T Consensus 1 FsV~p~~p~~Q~~~~~~YFdL~~~P~q~~~l~v~i~N~s 39 (121)
T PF06030_consen 1 FSVTPVLPENQIDKNVSYFDLKVKPGQKQTLEVRITNNS 39 (121)
T ss_pred CeEeecCCccccCCCCCeEEEEeCCCCEEEEEEEEEeCC
Confidence 5678898898888765555 489999999988887754
No 240
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=22.28 E-value=1.3e+02 Score=28.49 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=32.6
Q ss_pred eeeE-EEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCcc
Q 001065 856 KLSQ-ISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEY 918 (1167)
Q Consensus 856 ~l~~-i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key 918 (1167)
+.|+ +.+++...+ ..+ -.|.+.+. +...++.-++..++.|..+.||+|-+.+-|..+
T Consensus 40 ~~G~~v~l~~~N~~--~~~---h~~~i~~~-~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~ 97 (104)
T PF13473_consen 40 KAGQPVTLTFTNND--SRP---HEFVIPDL-GISKVLPPGETATVTFTPLKPGEYEFYCTMHPN 97 (104)
T ss_dssp ETTCEEEEEEEE-S--SS----EEEEEGGG-TEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T
T ss_pred cCCCeEEEEEEECC--CCc---EEEEECCC-ceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc
Confidence 3344 667776553 222 45555554 345677788888899999999999998775543
No 241
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=21.22 E-value=2.5e+02 Score=29.02 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCcccceEEEEEeCCCcEEEeE----EecCCc-EEE--eCCCCCccEEEE--EEcCC
Q 001065 48 RLDYSHVTVELRTLDGLVKEST----QCAPNG-YYF--IPVYDKGSFVIK--VNGPE 95 (1167)
Q Consensus 48 ~i~~sgv~v~L~~~~G~~~~~t----~t~~nG-~y~--~~~l~~G~Y~l~--~~~P~ 95 (1167)
=+++=.|+.+|.+.++..+.+. ..+.+| .|- +.+..+|+|.|+ +.+|.
T Consensus 64 wvPyL~v~y~i~~~~~~~~~~G~~mPM~A~DGpHYG~Nvkl~g~G~Y~v~~~I~pP~ 120 (151)
T PF10634_consen 64 WVPYLTVSYEITKKGSGKVQEGTFMPMVASDGPHYGDNVKLDGPGKYKVTFTIGPPS 120 (151)
T ss_dssp B--S-EEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEE-STSSEEEEEEEEEE-GG
T ss_pred ccCCcEEEEEEEeCCCCeEEEEecceeecCcCccccccccCCCCccEEEEEEEcCcc
Confidence 3577789999998775444443 356688 665 888899999995 45564
No 242
>PRK15314 outer membrane protein RatB; Provisional
Probab=21.16 E-value=1.2e+02 Score=42.39 Aligned_cols=25 Identities=20% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEccCCCCCcccceEEEEECCcce
Q 001065 861 SVRIYSKDDAGEPIPSVLLSLSGDDGY 887 (1167)
Q Consensus 861 ~~~v~~~~~~~~pl~gvllslsg~~~~ 887 (1167)
.|++.|.+ |+|++++.|+|+++.++
T Consensus 1611 tVTvtdsa--GnP~~~a~~~l~Rg~s~ 1635 (2435)
T PRK15314 1611 TIDVKDAA--GQPMKNVMVKISRGSSY 1635 (2435)
T ss_pred EEEEecCC--CCCCCCceEEEEecccc
Confidence 45666654 99999999999988654
No 243
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=21.02 E-value=4.1e+02 Score=23.07 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=13.9
Q ss_pred eeEEeccCCCCcEEEEEEe
Q 001065 1084 NFFQVKDLPKGKHLLQLRS 1102 (1167)
Q Consensus 1084 ~~f~~~~l~~~~y~v~l~s 1102 (1167)
-...|..++.|.|.|++.+
T Consensus 52 ~~i~~~~~~~GtYyi~V~~ 70 (70)
T PF04151_consen 52 ESITFTAPAAGTYYIRVYG 70 (70)
T ss_dssp EEEEEEESSSEEEEEEEE-
T ss_pred cEEEEEcCCCEEEEEEEEC
Confidence 4455666888999999863
No 244
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=20.99 E-value=1e+03 Score=25.31 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=33.1
Q ss_pred ceEEEEEeCCCcEEEeEEecC-Cc--EEEeCC-CCCccEEEEEEcCCCcccCCceEEEEEcC
Q 001065 53 HVTVELRTLDGLVKESTQCAP-NG--YYFIPV-YDKGSFVIKVNGPEGWSWNPDKVAVTVDD 110 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t~t~~-nG--~y~~~~-l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~ 110 (1167)
...|.|++++|+....-.++. .. ++.+|. ..+|.+.+++..-. -.+..+.+.|..
T Consensus 42 ~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~---~~~q~v~vtVtS 100 (179)
T PF09315_consen 42 PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTS---SSSQTVTVTVTS 100 (179)
T ss_pred CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCC---CCcceEEEEEEe
Confidence 457889999999866634444 23 444763 45898888885432 123444455543
No 245
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=20.19 E-value=1.3e+02 Score=31.88 Aligned_cols=38 Identities=29% Similarity=0.380 Sum_probs=27.9
Q ss_pred ccCccEEEEEeCC-CCeeeEEeecCcceEEEcCCCCCCE
Q 001065 959 PKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTT 996 (1167)
Q Consensus 959 p~~gv~v~~~~~~-~~~~~~~~Td~~G~~~i~gL~pg~~ 996 (1167)
|.+|..+.+...+ +..+.-.++-++|.||+.||.+|++
T Consensus 63 ppaGse~vvv~lGG~rShgviv~~~~~syR~~GL~aGeT 101 (203)
T COG4384 63 PPAGSEAVVVPLGGKRSHGVIVVSQHGSYRITGLKAGET 101 (203)
T ss_pred CCCCCeEEEEecCCccceeEEEEecCCccccccccCCce
Confidence 5666555555443 4455667788899999999999985
Done!