Query 001065
Match_columns 1167
No_of_seqs 361 out of 1041
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pz4_A Protein GBS052; SPAB, G 99.2 4.5E-11 1.5E-15 130.5 12.0 150 48-209 29-220 (239)
2 2pz4_A Protein GBS052; SPAB, G 99.2 6.1E-11 2.1E-15 129.5 12.8 149 871-1028 29-220 (239)
3 3kpt_A Collagen adhesion prote 99.0 1.5E-08 5.2E-13 116.8 22.5 63 48-110 19-83 (355)
4 3kpt_A Collagen adhesion prote 99.0 1E-08 3.6E-13 118.1 18.7 76 854-931 4-83 (355)
5 2x9x_A RRGB, cell WALL surface 99.0 4.1E-09 1.4E-13 124.6 15.2 148 857-1007 159-401 (444)
6 2x9x_A RRGB, cell WALL surface 98.9 1.4E-08 4.7E-13 120.1 17.3 144 781-934 171-417 (444)
7 2xtl_A Cell WALL surface ancho 98.8 5.3E-09 1.8E-13 123.4 9.4 194 785-1007 177-407 (452)
8 1cwv_A Invasin; integrin-bindi 98.7 3.3E-06 1.1E-10 101.3 29.6 296 127-459 29-378 (492)
9 2y1v_A RRGB, cell WALL surface 98.7 1E-07 3.5E-12 116.7 14.5 147 857-1007 314-556 (605)
10 2y1v_A RRGB, cell WALL surface 98.6 5.5E-07 1.9E-11 110.3 18.4 144 780-933 325-571 (605)
11 1cwv_A Invasin; integrin-bindi 98.4 3.1E-05 1.1E-09 92.8 26.1 299 49-379 40-380 (492)
12 2xtl_A Cell WALL surface ancho 98.4 1.4E-06 4.7E-11 102.9 12.5 165 146-314 177-422 (452)
13 3irp_X URO-adherence factor A; 98.3 4.7E-07 1.6E-11 105.9 7.2 76 26-103 306-381 (429)
14 3tkv_A FDEC fragment B, attach 98.3 4.3E-06 1.5E-10 98.3 14.9 300 144-459 18-381 (414)
15 3tkv_A FDEC fragment B, attach 98.3 7.7E-06 2.6E-10 96.1 15.5 302 50-379 21-383 (414)
16 1d2p_A Collagen adhesin, CNA; 98.1 0.0015 5E-08 75.2 30.3 279 51-381 22-355 (373)
17 3irp_X URO-adherence factor A; 97.9 1.8E-05 6.3E-10 92.6 9.0 70 126-196 306-378 (429)
18 2x5p_A FBA2, fibronectin bindi 97.9 3.7E-05 1.2E-09 74.3 9.3 76 854-934 24-102 (121)
19 2x5p_A FBA2, fibronectin bindi 97.7 4.9E-05 1.7E-09 73.4 6.7 74 931-1007 14-87 (121)
20 1h8l_A Carboxypeptidase GP180 97.7 0.0001 3.6E-09 85.7 10.4 75 326-402 301-377 (380)
21 3mn8_A LP15968P; catalytic dom 97.6 6.8E-05 2.3E-09 88.6 8.5 77 326-403 337-417 (435)
22 1d2p_A Collagen adhesin, CNA; 97.5 0.097 3.3E-06 60.1 32.3 280 145-468 19-354 (373)
23 2ww8_A RRGA, cell WALL surface 97.5 0.00015 5.1E-09 92.5 9.5 81 854-936 44-128 (893)
24 2nsm_A Carboxypeptidase N cata 97.5 0.00022 7.5E-09 84.5 9.6 63 326-390 321-384 (439)
25 2pn5_A TEP1R, thioester-contai 97.5 0.052 1.8E-06 73.0 33.4 264 77-378 64-384 (1325)
26 3qdh_A Fimbrial structural sub 97.3 0.00028 9.4E-09 78.8 6.9 83 855-937 156-281 (290)
27 1uwy_A Carboxypeptidase M; met 97.3 0.00038 1.3E-08 82.1 8.2 66 326-393 296-364 (426)
28 2hr0_A Complement C3 beta chai 97.2 0.011 3.8E-07 73.4 20.9 210 151-379 141-406 (645)
29 3hr6_A SPAA, putative surface- 97.2 0.00078 2.7E-08 79.3 9.5 80 856-935 305-420 (436)
30 3pf2_A Cell WALL surface ancho 97.0 0.0014 4.8E-08 74.0 9.3 77 857-934 181-295 (319)
31 1h8l_A Carboxypeptidase GP180 97.0 0.00095 3.3E-08 77.5 8.1 84 852-942 295-378 (380)
32 2nsm_A Carboxypeptidase N cata 96.8 0.0019 6.4E-08 76.5 8.8 64 126-205 321-384 (439)
33 3uxf_A Fimbrial subunit type 1 96.8 0.0011 3.7E-08 79.1 6.6 79 856-934 352-472 (488)
34 2ww8_A RRGA, cell WALL surface 96.6 0.0022 7.6E-08 81.8 8.0 65 47-111 58-124 (893)
35 3pf2_A Cell WALL surface ancho 96.6 0.0035 1.2E-07 70.7 8.6 65 47-111 193-293 (319)
36 3cu7_A Complement C5; Mg domai 96.6 0.15 5.1E-06 70.1 25.6 208 150-377 158-437 (1676)
37 3qec_A Putative carbohydrate b 96.5 0.0012 4.1E-08 65.7 3.4 55 886-940 86-149 (150)
38 1uwy_A Carboxypeptidase M; met 96.4 0.0032 1.1E-07 74.2 6.6 89 852-946 290-382 (426)
39 3mn8_A LP15968P; catalytic dom 96.4 0.0039 1.3E-07 73.6 7.2 85 854-946 333-421 (435)
40 3kcp_A Cellulosomal-scaffoldin 96.3 0.0049 1.7E-07 68.1 6.8 68 323-390 155-232 (321)
41 2b39_A C3; thioester, immune d 96.2 0.041 1.4E-06 75.6 17.0 209 151-378 162-425 (1661)
42 3t1w_A Four-domain fibronectin 96.1 2.6 9E-05 47.3 35.9 316 786-1124 31-368 (375)
43 3hr6_A SPAA, putative surface- 95.9 0.0073 2.5E-07 71.1 6.2 65 47-111 319-417 (436)
44 1xpn_A Hypothetical protein PA 95.9 0.0049 1.7E-07 62.4 3.9 54 887-940 107-169 (170)
45 3qdh_A Fimbrial structural sub 95.8 0.0069 2.3E-07 67.5 5.5 63 49-111 176-276 (290)
46 2boy_A 3-chlorocatechol 1,2-di 95.8 0.0074 2.5E-07 65.4 5.4 48 326-373 103-169 (254)
47 3r8q_A Fibronectin; heparin, F 95.7 1.1 3.8E-05 48.6 23.0 196 894-1102 71-274 (290)
48 2xsu_A Catechol 1,2 dioxygenas 95.7 0.017 5.7E-07 64.4 7.5 49 326-374 137-204 (312)
49 2hr0_A Complement C3 beta chai 95.5 0.81 2.8E-05 56.6 22.9 208 53-293 140-405 (645)
50 2bum_B Protocatechuate 3,4-dio 95.5 0.016 5.4E-07 62.4 6.4 48 326-373 79-150 (241)
51 2pn5_A TEP1R, thioester-contai 95.4 1.2 4.2E-05 59.7 25.9 208 53-292 136-383 (1325)
52 1nkg_A Rhamnogalacturonase B; 95.4 0.048 1.6E-06 64.9 10.8 70 127-211 259-328 (508)
53 2azq_A Catechol 1,2-dioxygenas 95.3 0.014 4.7E-07 65.1 5.2 48 326-373 133-199 (311)
54 3th1_A Chlorocatechol 1,2-diox 95.2 0.019 6.4E-07 62.4 6.0 49 326-374 100-167 (260)
55 3t1w_A Four-domain fibronectin 95.2 2.6 8.9E-05 47.3 24.2 136 957-1102 121-260 (375)
56 1nkg_A Rhamnogalacturonase B; 95.1 0.037 1.3E-06 65.9 8.6 66 326-395 258-327 (508)
57 1tmx_A Hydroxyquinol 1,2-dioxy 95.1 0.019 6.5E-07 63.4 5.6 49 326-374 134-200 (293)
58 1dmh_A 1,2-CTD, catechol 1,2-d 95.0 0.02 6.7E-07 63.8 5.2 48 326-373 134-202 (311)
59 3qva_A Transthyretin-like prot 94.9 0.024 8.2E-07 53.7 4.8 59 127-193 11-72 (116)
60 3uxf_A Fimbrial subunit type 1 94.8 0.012 4E-07 70.2 3.3 65 47-111 368-470 (488)
61 2xsu_A Catechol 1,2 dioxygenas 94.8 0.052 1.8E-06 60.5 8.1 53 127-187 138-204 (312)
62 3t63_M 3,4-PCD, protocatechuat 94.8 0.035 1.2E-06 59.5 6.5 48 326-373 78-149 (238)
63 3kcp_A Cellulosomal-scaffoldin 94.8 0.024 8.3E-07 62.6 5.3 72 202-293 139-220 (321)
64 3n9t_A PNPC; phospholipid bind 94.7 0.032 1.1E-06 61.5 6.0 49 326-374 130-197 (290)
65 3hhy_A 1,2-CTD, catechol 1,2-d 94.7 0.032 1.1E-06 61.1 5.9 49 326-374 132-199 (280)
66 2boy_A 3-chlorocatechol 1,2-di 94.6 0.038 1.3E-06 59.9 6.3 51 947-998 104-168 (254)
67 3t63_A 3,4-PCD, protocatechuat 94.6 0.03 1E-06 58.6 5.2 49 326-374 49-117 (200)
68 1fnf_A Fibronectin; RGD, extra 94.6 7.4 0.00025 43.4 37.0 293 814-1121 52-367 (368)
69 2bum_A Protocatechuate 3,4-dio 94.6 0.026 8.9E-07 59.5 4.7 48 326-373 53-125 (209)
70 3hrz_A Cobra venom factor; ser 94.4 4.7 0.00016 49.5 25.3 212 151-377 139-393 (627)
71 2azq_A Catechol 1,2-dioxygenas 94.4 0.072 2.5E-06 59.3 8.0 54 126-187 133-200 (311)
72 3th1_A Chlorocatechol 1,2-diox 94.4 0.074 2.5E-06 57.7 7.8 68 221-290 100-168 (260)
73 4acq_A Alpha-2-macroglobulin; 94.3 15 0.00052 49.6 31.5 206 152-376 141-401 (1451)
74 1tdq_A Tenascin-R; extracellul 94.2 7 0.00024 41.8 27.4 195 894-1103 65-268 (283)
75 2xi9_A Ancillary protein 1; ce 94.2 0.081 2.8E-06 61.8 8.2 75 858-935 25-104 (457)
76 2g2n_A Transthyretin-like prot 94.1 0.043 1.5E-06 52.0 4.7 59 128-193 6-71 (114)
77 1dmh_A 1,2-CTD, catechol 1,2-d 94.1 0.092 3.1E-06 58.4 8.1 69 221-289 134-203 (311)
78 3t63_A 3,4-PCD, protocatechuat 94.1 0.09 3.1E-06 55.0 7.5 67 221-289 49-117 (200)
79 3e8v_A Possible transglutamina 94.1 0.11 3.8E-06 46.0 6.8 52 328-380 3-62 (82)
80 2xi9_A Ancillary protein 1; ce 94.0 0.073 2.5E-06 62.2 7.4 63 46-111 36-101 (457)
81 2bum_B Protocatechuate 3,4-dio 94.0 0.063 2.1E-06 57.8 6.3 70 947-1026 80-168 (241)
82 3o5u_A Chlorocatechol 1,2-diox 94.0 0.048 1.7E-06 59.0 5.4 48 326-373 104-171 (257)
83 3hhy_A 1,2-CTD, catechol 1,2-d 93.8 0.11 3.7E-06 57.0 7.8 67 221-289 132-199 (280)
84 1f86_A Transthyretin Thr119Met 93.7 0.051 1.7E-06 51.7 4.3 59 128-193 3-69 (115)
85 1fnf_A Fibronectin; RGD, extra 93.6 11 0.00037 41.9 28.1 199 893-1102 54-258 (368)
86 3qec_A Putative carbohydrate b 93.5 0.045 1.5E-06 54.4 3.8 31 261-291 84-114 (150)
87 1tmx_A Hydroxyquinol 1,2-dioxy 93.4 0.1 3.6E-06 57.5 6.9 66 221-289 134-200 (293)
88 3t63_M 3,4-PCD, protocatechuat 93.4 0.21 7.1E-06 53.5 8.9 69 221-289 78-150 (238)
89 3n9t_A PNPC; phospholipid bind 93.3 0.15 5.1E-06 56.2 8.0 67 221-289 130-197 (290)
90 3prx_B Cobra venom factor; imm 93.3 4.7 0.00016 55.0 23.9 229 124-377 139-415 (1642)
91 3pdd_A Glycoside hydrolase, fa 93.2 1.4 4.7E-05 45.7 14.8 101 275-378 52-162 (190)
92 2bum_A Protocatechuate 3,4-dio 93.2 0.13 4.6E-06 54.1 7.0 68 221-288 53-125 (209)
93 2h0e_A Transthyretin-like prot 93.2 0.044 1.5E-06 52.5 3.0 60 127-193 10-74 (121)
94 3pdd_A Glycoside hydrolase, fa 93.2 5.3 0.00018 41.2 19.2 143 326-479 19-178 (190)
95 1wlh_A Gelation factor; ABP-12 93.1 2.4 8.1E-05 47.3 17.8 210 73-312 63-293 (311)
96 1xpn_A Hypothetical protein PA 93.1 0.062 2.1E-06 54.4 4.1 28 162-189 107-134 (170)
97 1oo2_A Transthyretin; retinol- 93.0 0.061 2.1E-06 51.4 3.7 59 128-193 4-70 (119)
98 2h4e_A Transthyretin; amyloid, 92.9 0.083 2.8E-06 51.0 4.5 59 128-193 12-78 (127)
99 1f86_A Transthyretin Thr119Met 92.7 0.29 9.8E-06 46.5 7.7 94 859-953 2-114 (115)
100 3e8v_A Possible transglutamina 92.5 0.38 1.3E-05 42.6 7.8 58 129-195 4-64 (82)
101 3qva_A Transthyretin-like prot 92.5 0.14 4.9E-06 48.4 5.5 91 858-949 10-113 (116)
102 4fxk_A Complement C4 beta chai 92.5 4.9 0.00017 49.4 21.1 212 151-377 155-431 (656)
103 2gee_A Hypothetical protein; f 92.4 11 0.00036 38.5 20.6 135 958-1102 49-187 (203)
104 2x9z_A RRGB, cell WALL surface 92.4 0.19 6.4E-06 55.1 7.1 65 857-921 156-228 (262)
105 2x9z_A RRGB, cell WALL surface 92.4 0.35 1.2E-05 52.9 9.3 59 226-300 163-228 (262)
106 3iwv_A 5-hydroxyisourate hydro 92.3 0.054 1.8E-06 52.9 2.4 60 127-193 27-95 (138)
107 3o5u_A Chlorocatechol 1,2-diox 92.3 0.14 4.9E-06 55.4 5.9 50 947-996 105-169 (257)
108 4ank_A Transthyretin; hormone 91.9 0.13 4.4E-06 51.0 4.6 59 128-193 32-98 (147)
109 2h4e_A Transthyretin; amyloid, 91.8 0.45 1.6E-05 45.9 8.1 98 857-955 9-125 (127)
110 1qr4_A Protein (tenascin); fib 91.6 12 0.0004 37.3 21.5 133 959-1102 33-166 (186)
111 3hrz_A Cobra venom factor; ser 91.4 15 0.0005 45.1 23.3 209 53-293 138-394 (627)
112 2g2n_A Transthyretin-like prot 91.4 0.46 1.6E-05 45.0 7.5 91 858-949 4-111 (114)
113 1qfh_A Protein (gelation facto 91.0 9.7 0.00033 39.8 18.4 134 53-196 45-184 (212)
114 1qr4_A Protein (tenascin); fib 90.8 6.8 0.00023 39.1 16.6 110 894-1005 55-168 (186)
115 1oo2_A Transthyretin; retinol- 90.8 0.35 1.2E-05 46.1 6.1 96 858-954 2-116 (119)
116 1tdq_A Tenascin-R; extracellul 90.4 21 0.00071 38.0 24.4 185 815-1005 63-269 (283)
117 4ank_A Transthyretin; hormone 89.2 0.32 1.1E-05 48.2 4.6 53 328-380 32-98 (147)
118 1d2o_A Collagen adhesin, CNA; 88.6 11 0.00036 38.9 15.8 127 52-196 23-170 (187)
119 2h0e_A Transthyretin-like prot 88.2 0.51 1.8E-05 45.1 5.1 53 223-291 11-70 (121)
120 1wlh_A Gelation factor; ABP-12 88.1 10 0.00034 42.1 16.7 134 52-196 143-283 (311)
121 1ti6_B Pyrogallol hydroxytrans 88.0 1.4 4.8E-05 48.4 9.3 50 145-196 207-256 (274)
122 2k7p_A Filamin-A; IG-like, ABP 87.9 21 0.0007 36.6 17.7 135 50-195 32-175 (188)
123 3iwv_A 5-hydroxyisourate hydro 87.7 0.37 1.3E-05 47.0 3.9 97 852-949 20-135 (138)
124 2gee_A Hypothetical protein; f 87.6 26 0.00089 35.5 20.7 109 894-1005 74-189 (203)
125 3tes_A Tencon; fibronectin typ 87.0 5.1 0.00017 36.2 11.1 61 959-1024 28-90 (98)
126 3prx_B Cobra venom factor; imm 86.6 17 0.00059 49.5 20.4 209 53-293 160-416 (1642)
127 1ti6_B Pyrogallol hydroxytrans 86.5 2 6.7E-05 47.2 9.4 68 227-318 203-270 (274)
128 2vkw_A Neural cell adhesion mo 86.1 16 0.00056 37.0 15.9 51 955-1005 34-89 (209)
129 3lpw_A A77-A78 domain from tit 85.9 23 0.00078 35.0 16.6 141 955-1102 32-177 (197)
130 2k7p_A Filamin-A; IG-like, ABP 85.3 20 0.00069 36.7 15.9 127 150-295 35-173 (188)
131 3lpw_A A77-A78 domain from tit 85.0 7.8 0.00027 38.6 12.6 50 957-1006 131-180 (197)
132 3r8q_A Fibronectin; heparin, F 84.3 46 0.0016 35.4 25.3 187 814-1005 68-276 (290)
133 1qfh_A Protein (gelation facto 84.3 10 0.00035 39.5 13.5 139 149-312 44-194 (212)
134 1f00_I Intimin; immunoglobulin 84.3 7 0.00024 42.9 12.3 53 326-379 21-81 (282)
135 2b39_A C3; thioester, immune d 84.0 4.1 0.00014 55.9 12.7 41 53-93 161-209 (1661)
136 4fxt_A Uncharacterized protein 83.8 20 0.00069 37.2 14.8 78 219-313 6-87 (202)
137 1d2o_A Collagen adhesin, CNA; 82.8 46 0.0016 34.2 17.3 119 145-291 19-161 (187)
138 2k7q_A Filamin-A; IG-like, ABP 82.6 25 0.00085 36.0 15.3 51 146-196 28-81 (191)
139 3p4l_A Neogenin; iron homeosta 82.5 31 0.0011 34.9 16.1 112 894-1005 61-187 (211)
140 2ha1_A Fibronectin; beta sandw 82.0 28 0.00096 35.0 15.5 50 957-1006 27-78 (201)
141 2j3s_A Filamin-A; cytoskeleton 81.5 62 0.0021 35.3 19.0 131 53-196 38-181 (288)
142 3rfz_B Outer membrane usher pr 81.2 5 0.00017 51.0 11.1 104 891-1002 692-801 (843)
143 2kbg_A N-CAM 2, neural cell ad 80.6 3.4 0.00012 39.0 7.1 50 955-1004 33-84 (114)
144 1r6v_A Subtilisin-like serine 80.5 39 0.0013 41.7 18.4 45 146-191 461-505 (671)
145 1zlg_A Anosmin 1; insulin-like 80.4 88 0.003 38.4 22.0 24 982-1005 332-355 (680)
146 4fxk_A Complement C4 beta chai 79.4 59 0.002 39.6 19.8 43 53-95 154-202 (656)
147 2ibg_A CG9211-PA, GH03927P; IH 78.8 8.6 0.00029 39.2 10.3 51 956-1006 143-196 (214)
148 2k7q_A Filamin-A; IG-like, ABP 78.8 44 0.0015 34.1 15.6 135 49-195 28-175 (191)
149 2jll_A NCAM2, neural cell adhe 77.4 83 0.0029 34.7 18.9 52 955-1006 222-274 (389)
150 3cu7_A Complement C5; Mg domai 77.3 56 0.0019 44.8 20.3 59 946-1005 369-439 (1676)
151 4acq_A Alpha-2-macroglobulin; 76.8 72 0.0025 43.1 20.7 218 777-1004 126-403 (1451)
152 3l5i_A Interleukin-6 receptor 76.6 81 0.0028 33.3 20.4 132 959-1102 127-272 (290)
153 2vkw_A Neural cell adhesion mo 75.7 17 0.00059 36.8 11.5 50 956-1005 136-186 (209)
154 1r6v_A Subtilisin-like serine 75.5 14 0.00047 45.6 12.3 131 329-459 451-611 (671)
155 1f00_I Intimin; immunoglobulin 75.5 19 0.00065 39.5 12.1 131 145-292 31-169 (282)
156 2cum_A Tenascin-X; hexabrachio 73.8 12 0.00041 34.0 8.7 24 982-1005 57-80 (105)
157 3hn5_A Putative exported prote 73.8 14 0.00048 38.7 9.9 57 320-378 5-73 (215)
158 2w1n_A O-GLCNACASE NAGJ; hexos 72.5 67 0.0023 33.8 14.5 31 978-1008 193-224 (238)
159 1wfu_A Unnamed protein product 72.4 8.2 0.00028 36.6 7.4 52 957-1008 47-99 (120)
160 3uaf_A TTR-52; beta barrel/san 72.3 4.6 0.00016 38.4 5.4 44 947-991 6-57 (117)
161 2jll_A NCAM2, neural cell adhe 72.1 1.2E+02 0.0041 33.3 21.1 51 956-1006 319-371 (389)
162 3d33_A Domain of unknown funct 71.3 6.2 0.00021 37.0 5.9 50 49-98 46-101 (108)
163 2ibg_A CG9211-PA, GH03927P; IH 70.7 31 0.0011 34.8 12.1 22 983-1004 69-90 (214)
164 3qht_C Monobody YSMB-1; fibron 69.0 12 0.0004 33.4 7.3 28 978-1005 52-79 (97)
165 2crm_A Fibronectin type-III do 68.6 9.5 0.00032 35.2 6.9 49 957-1005 47-96 (120)
166 3k2m_C Monobody HA4; engineere 68.1 22 0.00074 32.0 9.0 47 959-1005 33-81 (101)
167 2cuh_A Tenascin-X; fibronectin 68.1 14 0.00046 34.1 7.8 26 980-1005 55-80 (115)
168 2crz_A Fibronectin type-III do 67.0 8.9 0.0003 34.9 6.2 51 956-1006 37-87 (110)
169 3osv_A Flagellar basal-BODY RO 66.7 25 0.00086 34.1 9.6 45 146-190 34-89 (138)
170 3b83_A Ten-D3; beta sheet, com 66.6 19 0.00064 32.3 8.2 27 979-1005 50-76 (100)
171 2rb8_A Tenascin; beta sheet,lo 66.2 24 0.00082 31.8 9.0 26 980-1005 52-77 (104)
172 2l4o_A Cell WALL surface ancho 65.6 2.7 9.1E-05 43.1 2.4 24 167-191 103-128 (181)
173 1j8k_A Fibronectin; EDA, TYPEI 65.6 20 0.00067 31.5 8.0 24 982-1005 53-76 (94)
174 3rfz_B Outer membrane usher pr 65.5 33 0.0011 43.6 12.8 106 268-376 692-801 (843)
175 3pe9_A Fibronectin(III)-like m 65.0 14 0.00048 33.9 6.9 51 326-378 19-70 (98)
176 1x4x_A Fibronectin type-III do 64.9 15 0.00051 33.2 7.3 50 956-1006 34-83 (106)
177 4fxt_A Uncharacterized protein 64.0 33 0.0011 35.7 10.2 51 324-376 6-67 (202)
178 2haz_A N-CAM 1, neural cell ad 63.7 12 0.0004 33.9 6.3 52 954-1005 31-87 (105)
179 2ha1_A Fibronectin; beta sandw 63.7 42 0.0014 33.6 11.3 47 959-1005 138-186 (201)
180 3uaf_A TTR-52; beta barrel/san 62.7 12 0.00041 35.5 6.2 51 221-281 5-57 (117)
181 2cui_A Tenascin-X; fibronectin 62.6 16 0.00056 33.9 7.1 30 976-1005 62-91 (112)
182 3fl7_A Ephrin receptor; ATP-bi 62.4 40 0.0014 40.4 12.2 110 895-1005 398-516 (536)
183 3p4l_A Neogenin; iron homeosta 62.3 1.3E+02 0.0045 30.0 17.0 26 980-1005 60-85 (211)
184 2db8_A Tripartite motif protei 62.2 8.5 0.00029 35.3 5.0 49 957-1006 38-87 (110)
185 2yuw_A Myosin binding protein 60.9 14 0.00048 33.4 6.3 50 957-1006 36-87 (110)
186 3qwq_B Adnectin; cell surface 60.3 20 0.00069 33.3 7.3 46 959-1004 30-77 (114)
187 1bqu_A Protein (GP130); cytoki 59.7 31 0.001 35.0 9.4 46 959-1004 135-184 (215)
188 2dkm_A Collagen alpha-1(XX) ch 59.4 10 0.00034 34.4 4.9 21 985-1005 62-82 (104)
189 2p9r_A Alpha-2-M, alpha-2-macr 58.9 67 0.0023 29.0 10.5 46 146-191 31-85 (102)
190 1x5x_A Fibronectin type-III do 58.7 18 0.00062 32.6 6.7 50 956-1006 35-86 (109)
191 2dm4_A Sortilin-related recept 58.3 20 0.0007 32.2 6.9 23 983-1005 62-84 (108)
192 1bpv_A Titin, A71, connectin; 58.3 20 0.00067 33.2 6.8 54 955-1008 37-92 (112)
193 2dn7_A Receptor-type tyrosine- 57.9 26 0.00088 31.2 7.5 47 959-1005 36-83 (107)
194 3teu_A Fibcon; FN3 domain, fib 57.7 24 0.00082 31.1 7.2 47 959-1005 28-76 (98)
195 3t04_D Monobody 7C12; engineer 57.4 38 0.0013 30.4 8.6 27 979-1005 59-85 (103)
196 2ed8_A Netrin receptor DCC; tu 56.1 26 0.00089 31.3 7.2 46 959-1005 37-82 (106)
197 3f7q_A Integrin beta-4, GP150; 55.4 1.8E+02 0.0063 29.6 16.2 136 959-1102 32-179 (234)
198 2h41_A Fibronectin; beta sandw 55.0 26 0.00088 31.7 6.8 30 975-1004 50-79 (95)
199 1x4z_A Biregional cell adhesio 54.8 25 0.00087 32.3 7.1 52 955-1006 43-98 (121)
200 3sd2_A Putative member of DUF3 54.7 28 0.00097 31.9 6.8 49 50-98 43-94 (101)
201 3c12_A FLGD, flagellar protein 53.7 22 0.00076 34.5 6.6 44 147-190 37-91 (138)
202 2ed9_A Netrin receptor DCC; tu 53.7 33 0.0011 31.4 7.7 48 958-1005 59-106 (124)
203 1x5f_A Neogenin; RGM binding, 53.7 26 0.00089 31.9 6.9 47 959-1005 48-96 (120)
204 1x5z_A Receptor-type tyrosine- 53.5 13 0.00043 33.8 4.6 47 959-1005 45-91 (115)
205 2l4o_A Cell WALL surface ancho 52.6 8.4 0.00029 39.4 3.4 48 50-98 57-133 (181)
206 2ocf_D Fibronectin; estrogen r 50.1 36 0.0012 31.8 7.3 25 981-1005 79-103 (121)
207 1cfb_A Drosophila neuroglian; 50.1 2E+02 0.0069 28.4 15.0 138 956-1102 31-183 (205)
208 2dju_A Receptor-type tyrosine- 49.7 30 0.001 30.5 6.5 51 956-1006 32-83 (106)
209 1i1r_A GP130, interleukin-6 re 49.5 51 0.0017 35.5 9.5 47 959-1005 231-281 (303)
210 2e3v_A Neural cell adhesion mo 49.5 27 0.00093 32.4 6.3 51 955-1005 33-88 (122)
211 3f7q_A Integrin beta-4, GP150; 49.3 31 0.0011 35.6 7.5 22 984-1005 160-181 (234)
212 1x5l_A Ephrin type-A receptor 49.0 29 0.00099 31.1 6.3 24 982-1005 64-87 (111)
213 1uem_A KIAA1568 protein; immun 48.6 37 0.0013 30.7 7.0 49 957-1005 43-93 (117)
214 2wz8_A Cellulosome protein doc 48.4 23 0.00078 35.3 5.8 80 535-630 46-132 (156)
215 2p9r_A Alpha-2-M, alpha-2-macr 48.4 48 0.0016 30.0 7.6 43 53-95 37-86 (102)
216 2edb_A Netrin receptor DCC; tu 48.3 39 0.0013 31.1 7.1 24 982-1005 69-92 (116)
217 1x3d_A Fibronectin type-III do 47.9 17 0.00057 33.3 4.5 25 982-1006 71-95 (118)
218 1x5g_A Neogenin; RGM binding, 47.7 36 0.0012 30.7 6.8 46 959-1005 47-92 (116)
219 1x5y_A Myosin binding protein 47.1 26 0.00088 31.7 5.7 50 956-1005 36-87 (111)
220 1cfb_A Drosophila neuroglian; 47.0 61 0.0021 32.4 9.1 47 959-1005 136-185 (205)
221 2yux_A Myosin-binding protein 46.8 38 0.0013 31.1 6.8 50 957-1006 46-96 (120)
222 2dle_A Receptor-type tyrosine- 46.0 12 0.00042 34.3 3.2 24 982-1005 57-80 (104)
223 2ee2_A Contactin-1; neural cel 45.1 43 0.0015 30.5 7.0 25 982-1006 72-96 (119)
224 1wf5_A Sidekick 2 protein; FNI 45.1 29 0.00099 31.7 5.7 25 982-1006 74-98 (121)
225 2ede_A Netrin receptor DCC; tu 45.0 49 0.0017 29.7 7.2 48 959-1006 40-91 (114)
226 2edy_A Receptor-type tyrosine- 44.9 26 0.0009 30.9 5.2 46 959-1005 40-85 (103)
227 2djs_A Ephrin type-B receptor 44.8 33 0.0011 30.7 5.9 24 982-1005 61-84 (108)
228 3d33_A Domain of unknown funct 44.1 41 0.0014 31.3 6.4 51 145-195 45-101 (108)
229 1uc6_A CNTF receptor, ciliary 43.8 30 0.001 31.4 5.5 23 983-1005 66-88 (109)
230 3l48_A Outer membrane usher pr 43.7 34 0.0012 31.1 5.6 48 327-374 9-59 (94)
231 2yrz_A Integrin beta-4; GP150, 43.7 40 0.0014 30.6 6.4 24 982-1005 71-94 (118)
232 1x4y_A Biregional cell adhesio 43.2 17 0.00057 33.3 3.7 22 984-1005 69-90 (114)
233 1q38_A Fibronectin; amyloid fi 43.1 13 0.00045 32.6 2.6 32 975-1006 29-60 (89)
234 2ee3_A Collagen alpha-1(XX) ch 43.1 42 0.0014 30.8 6.4 23 983-1005 59-81 (108)
235 1oww_A FN, fibronectin first t 42.7 23 0.00078 32.1 4.1 29 980-1008 57-85 (98)
236 1zlg_A Anosmin 1; insulin-like 42.7 4.2E+02 0.014 32.2 17.3 24 982-1005 221-244 (680)
237 3fcg_A F1 capsule-anchoring pr 42.5 61 0.0021 29.2 7.0 46 49-96 22-71 (90)
238 1x5a_A Ephrin type-A receptor 42.5 18 0.00061 33.0 3.7 21 986-1006 64-84 (107)
239 3hn5_A Putative exported prote 42.4 56 0.0019 34.2 7.7 78 856-938 9-98 (215)
240 4eiu_A Uncharacterized hypothe 41.9 86 0.0029 33.5 9.1 56 321-376 5-76 (249)
241 3fl7_A Ephrin receptor; ATP-bi 41.3 2.1E+02 0.0073 34.0 13.8 114 982-1103 398-515 (536)
242 3osv_A Flagellar basal-BODY RO 41.2 32 0.0011 33.3 5.5 42 52-93 37-89 (138)
243 2e7h_A Ephrin type-B receptor 41.1 39 0.0013 30.4 5.9 22 984-1005 64-85 (109)
244 2ed7_A Netrin receptor DCC; tu 40.9 32 0.0011 31.2 5.3 24 982-1005 72-95 (119)
245 3n1f_C Cell adhesion molecule- 40.6 67 0.0023 28.7 7.3 23 982-1004 63-85 (102)
246 1wfo_A Sidekick 2; FN3, cell a 40.4 57 0.0019 30.1 7.1 28 978-1005 79-106 (130)
247 2ic2_A CG9211-PA, GH03927P; IH 40.0 60 0.0021 29.9 7.1 22 985-1006 72-93 (115)
248 3mtr_A N-CAM-1, NCAM-1, neural 39.8 1.3E+02 0.0046 29.9 10.4 54 955-1008 139-197 (215)
249 1x5i_A Neogenin; RGM binding, 39.7 26 0.0009 32.8 4.5 25 981-1005 78-102 (126)
250 1wfn_A Sidekick 2; FN3, cell a 39.5 51 0.0017 29.9 6.5 25 981-1005 71-95 (119)
251 2dmk_A Midline 2 isoform 2; mi 39.4 20 0.00069 33.7 3.7 26 983-1008 79-104 (127)
252 3l48_A Outer membrane usher pr 39.4 70 0.0024 28.9 7.0 51 945-999 7-58 (94)
253 2v5y_A Receptor-type tyrosine- 39.2 6E+02 0.021 30.8 24.4 114 981-1102 419-545 (731)
254 1wis_A KIAA1514 protein; FNIII 38.6 35 0.0012 31.6 5.2 51 956-1006 44-101 (124)
255 1cd9_B G-CSF-R, protein (G-CSF 36.8 83 0.0029 31.7 8.3 24 981-1004 169-192 (215)
256 3sd2_A Putative member of DUF3 36.8 2E+02 0.0068 26.4 9.4 52 145-196 41-95 (101)
257 4a2l_A BT_4663, two-component 36.7 28 0.00096 43.5 5.4 40 533-579 741-782 (795)
258 2edd_A Netrin receptor DCC; tu 36.4 22 0.00077 33.3 3.4 23 983-1005 77-99 (123)
259 3c12_A FLGD, flagellar protein 35.9 58 0.002 31.5 6.4 44 50-93 37-91 (138)
260 1uen_A KIAA0343 protein; immun 35.4 39 0.0013 30.9 5.0 24 982-1005 78-101 (125)
261 1v5j_A KIAA1355 protein, RSGI 34.9 48 0.0016 30.6 5.3 50 956-1005 33-84 (108)
262 3l5i_A Interleukin-6 receptor 34.6 71 0.0024 33.8 7.6 46 960-1005 229-274 (290)
263 1va9_A DOWN syndrome cell adhe 33.7 23 0.00077 32.4 2.9 23 983-1005 77-99 (122)
264 2c9r_A COPC, copper resistance 33.1 64 0.0022 29.6 5.8 28 176-205 71-101 (102)
265 1x5j_A Neogenin; RGM binding, 32.8 19 0.00066 33.2 2.3 24 982-1005 66-89 (113)
266 3v9f_A Two-component system se 32.2 41 0.0014 41.9 5.8 41 532-579 734-776 (781)
267 2edx_A Protein tyrosine phosph 32.1 29 0.00099 32.2 3.4 25 981-1005 76-100 (134)
268 3ott_A Two-component system se 31.9 32 0.0011 42.7 4.8 39 534-579 708-748 (758)
269 1k85_A Chitinase A1; fibronect 31.7 37 0.0013 29.2 3.9 23 984-1006 51-73 (88)
270 2d7n_A Filamin-C; beta-sandwic 31.6 1.1E+02 0.0038 27.5 7.0 56 52-109 22-81 (93)
271 2ee9_A Filamin-B; beta-sandwic 31.6 1.5E+02 0.0051 26.8 7.9 60 49-110 27-90 (95)
272 2xwx_A GBPA, glcnac-binding pr 31.3 3.2E+02 0.011 31.1 12.4 47 326-377 325-372 (391)
273 1uey_A KIAA0343 protein; immun 31.1 58 0.002 30.0 5.4 51 956-1006 43-96 (127)
274 1ujt_A KIAA1568 protein; fibro 30.9 28 0.00097 32.7 3.1 22 983-1004 74-95 (120)
275 1nqj_A Class 1 collagenase; be 30.7 63 0.0022 30.6 5.4 12 903-914 94-105 (119)
276 1wk0_A KIAA0970 protein; fibro 30.6 28 0.00096 33.8 3.1 24 981-1004 79-102 (137)
277 2dlh_A Receptor-type tyrosine- 30.4 25 0.00085 32.0 2.6 24 982-1005 74-97 (121)
278 2dbj_A Proto-oncogene tyrosine 28.8 40 0.0014 31.1 3.8 25 981-1005 76-100 (124)
279 3n06_B PRL-R, prolactin recept 28.7 84 0.0029 31.6 6.6 26 980-1005 161-186 (210)
280 1x5h_A Neogenin; RGM binding, 28.7 29 0.00099 32.3 2.8 24 982-1005 75-98 (132)
281 2ekj_A Collagen alpha-1(XX) ch 28.6 12 0.00041 33.9 -0.0 24 982-1005 59-82 (105)
282 2ds4_A Tripartite motif protei 28.0 1.3E+02 0.0046 27.3 7.3 42 53-94 50-96 (113)
283 2w1n_A O-GLCNACASE NAGJ; hexos 27.4 90 0.0031 32.9 6.2 42 336-377 176-219 (238)
284 2h41_A Fibronectin; beta sandw 26.8 1.3E+02 0.0045 26.9 6.7 29 527-555 50-79 (95)
285 2qbw_A PDZ-fibronectin fusion 26.2 88 0.003 31.5 6.1 28 979-1006 152-179 (195)
286 2xet_A CAF1A usher, F1 capsule 25.9 90 0.0031 27.6 5.4 50 947-1002 3-54 (89)
287 2dlg_A Filamin-B; beta-sandwic 25.8 1.3E+02 0.0043 27.6 6.4 43 51-94 30-76 (102)
288 4eiu_A Uncharacterized hypothe 25.3 1.8E+02 0.0061 31.1 8.2 57 856-914 8-76 (249)
289 3klq_A Putative pilus anchorin 25.2 2.1E+02 0.0072 27.9 8.1 61 417-479 23-88 (141)
290 1lyq_A PCOC copper resistance 25.0 84 0.0029 28.9 5.1 28 176-205 73-103 (104)
291 2c9r_A COPC, copper resistance 24.6 80 0.0027 28.9 4.8 43 48-90 28-82 (102)
292 3g3l_A Putative uncharacterize 24.4 68 0.0023 32.9 4.6 53 325-382 14-68 (327)
293 3klq_A Putative pilus anchorin 23.9 1.6E+02 0.0053 28.8 6.9 42 533-578 45-89 (141)
294 2dia_A Filamin-B; beta-sandwic 23.8 1.3E+02 0.0043 27.8 6.2 41 52-93 42-86 (113)
295 3v9f_A Two-component system se 23.1 64 0.0022 40.1 5.2 26 269-294 733-758 (781)
296 1bqu_A Protein (GP130); cytoki 23.0 5.5E+02 0.019 25.2 12.2 25 982-1006 60-85 (215)
297 2v5y_A Receptor-type tyrosine- 22.8 1.1E+03 0.036 28.5 26.6 222 857-1102 91-335 (731)
298 4a2l_A BT_4663, two-component 22.5 68 0.0023 39.9 5.3 41 270-310 740-780 (795)
299 1cd9_B G-CSF-R, protein (G-CSF 22.3 4.4E+02 0.015 26.1 10.7 21 985-1005 69-89 (215)
300 2dj4_A Filamin-B; beta-sandwic 22.1 98 0.0033 28.4 5.0 41 53-93 44-87 (108)
301 3rgh_A Filamin-A; cell adhesio 21.4 1.1E+02 0.0037 27.7 5.1 41 53-93 40-83 (100)
302 1lyq_A PCOC copper resistance 21.0 83 0.0028 28.9 4.2 43 48-90 29-84 (104)
303 4g5a_A Uncharacterized protein 20.8 2.1E+02 0.0073 24.7 6.2 50 35-89 31-84 (99)
304 2ee9_A Filamin-B; beta-sandwic 20.6 1.8E+02 0.0061 26.3 6.2 42 266-311 46-89 (95)
305 2d7n_A Filamin-C; beta-sandwic 20.3 2.6E+02 0.009 24.9 7.3 25 435-459 39-66 (93)
No 1
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} PDB: 3phs_A
Probab=99.20 E-value=4.5e-11 Score=130.53 Aligned_cols=150 Identities=17% Similarity=0.135 Sum_probs=109.3
Q ss_pred CCcccceEEEEEeCCCc----------------------EEEeEEecCCcEEEeCCCCCccEEE-EEEcCCCcccCCceE
Q 001065 48 RLDYSHVTVELRTLDGL----------------------VKESTQCAPNGYYFIPVYDKGSFVI-KVNGPEGWSWNPDKV 104 (1167)
Q Consensus 48 ~i~~sgv~v~L~~~~G~----------------------~~~~t~t~~nG~y~~~~l~~G~Y~l-~~~~P~G~~~~p~~~ 104 (1167)
.-+|+||+|+|+..++. .+.+.+|+.+|.+.|..|++|.|.| +.++|.| .+.+...
T Consensus 29 g~~L~Ga~F~l~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~tTd~~G~~~~~~L~~G~Y~v~Et~aP~G-~l~~~~~ 107 (239)
T 2pz4_A 29 GTPIEGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLPDGIYYGLAVKAGEK-NRNVSAF 107 (239)
T ss_dssp CEECSSCEEEEEEESCCCCTTHHHHHHTSCHHHHHHHEEEEEEEECCTTSEEEEEEEESEEEEEEEEETTEE-CTTBCCE
T ss_pred CCCcCCcEEEEEEecCcccccccchhhhhchhhhhccCCceeEEEECCCCeEEECCCCCeeEEEEEEECCCC-cccCceE
Confidence 35689999999985433 4566688999999999999999999 7899999 8888888
Q ss_pred EEEEcCCCcCCcceeeEEEeCcEEEEEE--EeccCCccccCCCCCCcceEEEEEeCCCcEE---------------EEEE
Q 001065 105 AVTVDDTGCNGNEDINFRFTGFTLLGRV--VGAIGGESCLDKGGGPSNVNVELLSHSGDLI---------------SSVI 167 (1167)
Q Consensus 105 ~v~Vd~~~~s~~~dinf~~~g~~IsG~V--~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i---------------~~tt 167 (1167)
.+.+..+ +.+..+.-...|.+ ... + ++..++.+|+||.|+|++.+|..+ ...+
T Consensus 108 ~v~i~~d-------v~v~~~n~~~~g~~~i~K~-d--~~~~~~~~L~GA~F~l~~~~g~~~~~~~~g~~~~~~~~~~~~~ 177 (239)
T 2pz4_A 108 LVDLSED-------KVIYPKIIWSTGELDLLKV-G--VDGDTKKPLAGVVFELYEKNGRTPIRVKNGVHSQDIDAAKHLE 177 (239)
T ss_dssp EEEESSC-------EEECCCBCCCEEEEEEEEE-E--EETTEEEECCSCEEEEEETTCSSCBCEETTEECCSTTCBSCEE
T ss_pred EEEeCCC-------eEEEEeeeeeeccEEEEEe-c--cCCCCCcccCCCEEEEEeCCCCEEEeecccceecccccceEEE
Confidence 8888654 22322222233433 221 1 000123799999999999887543 3688
Q ss_pred eCCCceEEEccccCceEEEEEEc--CCceeEeecceEEEEccCC
Q 001065 168 TSSEGSYLFKNIIPGKYKLRASH--PNLSVEVRGSTEVELGFEN 209 (1167)
Q Consensus 168 Td~~G~f~f~~l~pG~Y~l~~~~--~g~~~~~~~~~~V~v~~~~ 209 (1167)
||++|.+.|.+|++|+|+|.+.. .||.+. ...+.|+|..+.
T Consensus 178 Td~~G~~~~~~L~~G~Y~l~EtkAP~GY~l~-~~~~~f~i~~~~ 220 (239)
T 2pz4_A 178 TDSSGHIRISGLIHGDYVLKEIETQSGYQIG-QAETAVTIEKSK 220 (239)
T ss_dssp CCTTSEEEEEEEESEEEEEEEEECCTTBCCC-CSEEEEEECTTS
T ss_pred ECCCCeEEECCCCCceEEEEEEECCCCcCcC-CccEEEEEeCCC
Confidence 99999999999999999998854 488876 334778877554
No 2
>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions, IGG-like domain, cell adhesion; 1.80A {Streptococcus agalactiae} PDB: 3phs_A
Probab=99.20 E-value=6.1e-11 Score=129.46 Aligned_cols=149 Identities=18% Similarity=0.222 Sum_probs=106.3
Q ss_pred CCcccceEEEEECCcce-----------------------eeceeecCCceEEEecCCCcceEEeec--cCccccCCCce
Q 001065 871 GEPIPSVLLSLSGDDGY-----------------------RNNSVSWAGGSFHFDNLFPGNFYLRPL--LKEYAFSPPAQ 925 (1167)
Q Consensus 871 ~~pl~gvllslsg~~~~-----------------------r~n~~T~~~G~~~f~~L~PG~Y~~~~~--~key~~~p~~~ 925 (1167)
++||+||.|.|-..++. ...++||++|.+.|.+|++|.|+|++. ..+ .+++.+.
T Consensus 29 g~~L~Ga~F~l~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~tTd~~G~~~~~~L~~G~Y~v~Et~aP~G-~l~~~~~ 107 (239)
T 2pz4_A 29 GTPIEGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLPDGIYYGLAVKAGEK-NRNVSAF 107 (239)
T ss_dssp CEECSSCEEEEEEESCCCCTTHHHHHHTSCHHHHHHHEEEEEEEECCTTSEEEEEEEESEEEEEEEEETTEE-CTTBCCE
T ss_pred CCCcCCcEEEEEEecCcccccccchhhhhchhhhhccCCceeEEEECCCCeEEECCCCCeeEEEEEEECCCC-cccCceE
Confidence 78999999988653221 124689999999999999999999987 445 7888899
Q ss_pred eEEecCCcEEEEEEEEEeeeEE-EEEEEEcC--CCCccCccEEEEEeCCCC-ee--------------eEEeecCcceEE
Q 001065 926 AIELGSGESREVIFQATRVAYS-ATGTITLL--SGQPKDGVSVEARSESKG-YY--------------EETVTDTSGSYR 987 (1167)
Q Consensus 926 ~i~v~~G~~~~v~~~~~r~~~s-~~G~V~~~--~g~p~~gv~v~~~~~~~~-~~--------------~~~~Td~~G~~~ 987 (1167)
.|+|... ..+...+.+..++ .+-|+++- ++.+|+||.|++.+.++. +. ...+||++|++.
T Consensus 108 ~v~i~~d--v~v~~~n~~~~g~~~i~K~d~~~~~~~~L~GA~F~l~~~~g~~~~~~~~g~~~~~~~~~~~~~Td~~G~~~ 185 (239)
T 2pz4_A 108 LVDLSED--KVIYPKIIWSTGELDLLKVGVDGDTKKPLAGVVFELYEKNGRTPIRVKNGVHSQDIDAAKHLETDSSGHIR 185 (239)
T ss_dssp EEEESSC--EEECCCBCCCEEEEEEEEEEEETTEEEECCSCEEEEEETTCSSCBCEETTEECCSTTCBSCEECCTTSEEE
T ss_pred EEEeCCC--eEEEEeeeeeeccEEEEEeccCCCCCcccCCCEEEEEeCCCCEEEeecccceecccccceEEEECCCCeEE
Confidence 9999764 3333333322222 22344432 238999999999986533 22 578999999999
Q ss_pred EcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecCcc
Q 001065 988 LRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGD 1028 (1167)
Q Consensus 988 i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d 1028 (1167)
+.+|.+|.||.++++++++|- . .+..+.++|....
T Consensus 186 ~~~L~~G~Y~l~EtkAP~GY~---l---~~~~~~f~i~~~~ 220 (239)
T 2pz4_A 186 ISGLIHGDYVLKEIETQSGYQ---I---GQAETAVTIEKSK 220 (239)
T ss_dssp EEEEESEEEEEEEEECCTTBC---C---CCSEEEEEECTTS
T ss_pred ECCCCCceEEEEEEECCCCcC---c---CCccEEEEEeCCC
Confidence 999999999999999987641 2 1234556665443
No 3
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=99.01 E-value=1.5e-08 Score=116.78 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=54.2
Q ss_pred CCcccceEEEEEeCCCcEEE-eEEecCCcEEEeCCCCCccEEE-EEEcCCCcccCCceEEEEEcC
Q 001065 48 RLDYSHVTVELRTLDGLVKE-STQCAPNGYYFIPVYDKGSFVI-KVNGPEGWSWNPDKVAVTVDD 110 (1167)
Q Consensus 48 ~i~~sgv~v~L~~~~G~~~~-~t~t~~nG~y~~~~l~~G~Y~l-~~~~P~G~~~~p~~~~v~Vd~ 110 (1167)
.-.|+||+|+|++.+|..+. ..+|+.+|.+.+..|++|.|.| |.++|.||...+..+.+.|..
T Consensus 19 ~~~L~GA~F~l~~~~g~~~~~~~tTd~~G~~~~~~L~~G~Y~~~Et~aP~GY~~~~~~~~f~v~~ 83 (355)
T 3kpt_A 19 EKAMAGAVFSLFKKDGTEVKKELATDANGHIRVQGLEYGEYYFQETKAPKGYVIDPTKREFFVKN 83 (355)
T ss_dssp GCBCCSCEEEEEETTSCEEEEEEECCTTSEEEEEEEESEEEEEEEEECCTTBCCCCCCEEEEECS
T ss_pred CCCcCCcEEEEEECCCCEEEEEEEECCCCeEEECCcCCceEEEEEEeCCCCeEcCCceEEEEEec
Confidence 45789999999999998774 4577889999999999999999 789999999988777777765
No 4
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579} PDB: 3rkp_A
Probab=98.97 E-value=1e-08 Score=118.12 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=60.7
Q ss_pred EEeeeEEEEEEEccCCCCCcccceEEEEECCcc--eeeceeecCCceEEEecCCCcceEEeec--cCccccCCCceeEEe
Q 001065 854 CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDG--YRNNSVSWAGGSFHFDNLFPGNFYLRPL--LKEYAFSPPAQAIEL 929 (1167)
Q Consensus 854 ~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~--~r~n~~T~~~G~~~f~~L~PG~Y~~~~~--~key~~~p~~~~i~v 929 (1167)
..+.|+|.+++.|++ +.+|+||.|.|...++ ....++||++|.+.|.+|.||.|+|++. ..+|.+++.+..|.|
T Consensus 4 ~~~~g~~~i~K~d~~--~~~L~GA~F~l~~~~g~~~~~~~tTd~~G~~~~~~L~~G~Y~~~Et~aP~GY~~~~~~~~f~v 81 (355)
T 3kpt_A 4 EIKRGAVDLIKTGVN--EKAMAGAVFSLFKKDGTEVKKELATDANGHIRVQGLEYGEYYFQETKAPKGYVIDPTKREFFV 81 (355)
T ss_dssp --CEEEEEEEEECGG--GCBCCSCEEEEEETTSCEEEEEEECCTTSEEEEEEEESEEEEEEEEECCTTBCCCCCCEEEEE
T ss_pred ceEEEEEEEEEECCC--CCCcCCcEEEEEECCCCEEEEEEEECCCCeEEECCcCCceEEEEEEeCCCCeEcCCceEEEEE
Confidence 456799999999875 8999999999987654 2356899999999999999999999986 568888765555554
Q ss_pred cC
Q 001065 930 GS 931 (1167)
Q Consensus 930 ~~ 931 (1167)
..
T Consensus 82 ~~ 83 (355)
T 3kpt_A 82 KN 83 (355)
T ss_dssp CS
T ss_pred ec
Confidence 44
No 5
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A
Probab=98.96 E-value=4.1e-09 Score=124.55 Aligned_cols=148 Identities=12% Similarity=0.151 Sum_probs=108.1
Q ss_pred eeEEEEEEEccCCCCCcc-----cceEEEEECCc---ceeeceeecCCceEEEecC-CCcceEEeec-cCccccCC----
Q 001065 857 LSQISVRIYSKDDAGEPI-----PSVLLSLSGDD---GYRNNSVSWAGGSFHFDNL-FPGNFYLRPL-LKEYAFSP---- 922 (1167)
Q Consensus 857 l~~i~~~v~~~~~~~~pl-----~gvllslsg~~---~~r~n~~T~~~G~~~f~~L-~PG~Y~~~~~-~key~~~p---- 922 (1167)
.|+|.|++.+.+ |++| ++|.|.|...+ .....+.||++|++.|.+| +||+|+|++. +.+|.++.
T Consensus 159 ~G~i~i~K~d~~--g~~l~~~~g~~A~F~L~~~~~~~~v~~~~ttd~~G~~~~~~L~~~G~Y~v~Et~a~GY~l~~~~~~ 236 (444)
T 2x9x_A 159 NGDLTLTKTWVD--ATGAPIPAGAEATFDLVNAQAGKVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSIKGYSADYQEIT 236 (444)
T ss_dssp TSCEEEEEEEEC--TTSCBCCCCSCEEEEEEETTTCCEEEEEEECTTCCEEEECSCCTTSCEEEEECCBTTBEEEECCCC
T ss_pred cceEEEEEecCC--CCCcccccCCceEEEEEECCCCcEEEEEEEeCCCceEEEcCCCCCCcEEEEEEecCceEecccccC
Confidence 789999999886 5655 55999998764 2455789999999999999 9999999985 47898773
Q ss_pred CceeEEecCCcE---EEEEE-EEEeee-EEEEEEEEcCCCCccCccEEEEEeCC--CCe---------------------
Q 001065 923 PAQAIELGSGES---REVIF-QATRVA-YSATGTITLLSGQPKDGVSVEARSES--KGY--------------------- 974 (1167)
Q Consensus 923 ~~~~i~v~~G~~---~~v~~-~~~r~~-~s~~G~V~~~~g~p~~gv~v~~~~~~--~~~--------------------- 974 (1167)
....|+|++... ..+.. ...... ...+-||++ +|.+|+||.|++.+.+ +.+
T Consensus 237 ~~~~vtI~~~~~~~~~~~~~~~~~v~~g~v~~~KvD~-~~~~L~GA~F~l~~~~~~g~~v~~~~~~~~~~~~~~L~~g~y 315 (444)
T 2x9x_A 237 TAGEIAVKNWKDENPKPLDPTEPKVVTYGKKFVKVND-KDNRLAGAEFVIANADNAGQYLARKADKVSQEEKQLVVTTKD 315 (444)
T ss_dssp STTEEEEEEECCCCCCCBCCCCCEEECEEEEEEEECT-TCCBCSCCEEEEESSSSSSCEEEECGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEeccccccccccccccceEEeeeEEEEEECC-CCCCcCCcEEEEEecCCCCcEEeeecccccccccccccccce
Confidence 556677765322 00000 000111 224556665 5699999999999654 221
Q ss_pred -----------------------------------------------------eeEEeecCcceEEEcCCCCCCEEEEEE
Q 001065 975 -----------------------------------------------------YEETVTDTSGSYRLRGLHPDTTYVIKV 1001 (1167)
Q Consensus 975 -----------------------------------------------------~~~~~Td~~G~~~i~gL~pg~~y~v~~ 1001 (1167)
....+||++|+|+|.+|.||.||.+++
T Consensus 316 ~~~EAp~gY~~~t~e~~~~~~~~kid~~~~~l~gA~~~~~~~~~~~~~~~~~~~~~~~td~~G~~~~~~L~~G~Y~l~Et 395 (444)
T 2x9x_A 316 ALDRAVAAYNALTAQQQTQQEKEKVDKAQAAYNAAVIAANNAFEWVADKDNENVVKLVSDAQGRFEITGLLAGTYYLEET 395 (444)
T ss_dssp HHHHHHHHHHTSCCC------CHHHHHHHHHHHHHHHHHCSSEEEESCTTCTTBCCEECCTTCEEEEEEECSEEEEEEEE
T ss_pred eeeecccccccccccccccceeeeecccccccccceeecccceeeccccccCceeEEEECCCCeEEECCCCCceEEEEEe
Confidence 135789999999999999999999999
Q ss_pred EeccCC
Q 001065 1002 VKKDGF 1007 (1167)
Q Consensus 1002 ~~~~~~ 1007 (1167)
+++++|
T Consensus 396 kAP~GY 401 (444)
T 2x9x_A 396 KQPAGY 401 (444)
T ss_dssp ECCTTS
T ss_pred eCCCCc
Confidence 998865
No 6
>2x9x_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.50A {Streptococcus pneumoniae} PDB: 2x9w_A 2x9y_A
Probab=98.91 E-value=1.4e-08 Score=120.06 Aligned_cols=144 Identities=16% Similarity=0.214 Sum_probs=108.3
Q ss_pred ccccC--CCCCeEEEEEeccchhhhhcccCceeEEEEeCCCceEEeCCCCCCceEEEE--EcCCCeEEee--e-CCcee-
Q 001065 781 GSVSP--PLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYNVE--ASKPGYYLRQ--V-GPNSF- 852 (1167)
Q Consensus 781 G~v~p--~l~gv~i~i~~~~~~~~~~~~~g~~~~~~~Td~~G~f~~~~L~~~~~y~i~--a~k~gy~~~~--~-~~~~f- 852 (1167)
|+..+ +++||.|+|...+. ++.+.....||++|++.|..|.+...|.+. .+ +||.++. . .++.|
T Consensus 171 g~~l~~~~g~~A~F~L~~~~~-------~~~v~~~~ttd~~G~~~~~~L~~~G~Y~v~Et~a-~GY~l~~~~~~~~~~vt 242 (444)
T 2x9x_A 171 ATGAPIPAGAEATFDLVNAQA-------GKVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSI-KGYSADYQEITTAGEIA 242 (444)
T ss_dssp TTSCBCCCCSCEEEEEEETTT-------CCEEEEEEECTTCCEEEECSCCTTSCEEEEECCB-TTBEEEECCCCSTTEEE
T ss_pred CCCcccccCCceEEEEEECCC-------CcEEEEEEEeCCCceEEEcCCCCCCcEEEEEEec-CceEecccccCCcEEEE
Confidence 44433 45669999988653 234556789999999999999433456555 45 9999984 1 12222
Q ss_pred -E---------------EEeeeEEEEEEEccCCCCCcccceEEEEECCc--c----------------------------
Q 001065 853 -S---------------CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDD--G---------------------------- 886 (1167)
Q Consensus 853 -~---------------~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~--~---------------------------- 886 (1167)
. ....|+|.+.++|++ +.+|+||.|.|...+ +
T Consensus 243 I~~~~~~~~~~~~~~~~~v~~g~v~~~KvD~~--~~~L~GA~F~l~~~~~~g~~v~~~~~~~~~~~~~~L~~g~y~~~EA 320 (444)
T 2x9x_A 243 VKNWKDENPKPLDPTEPKVVTYGKKFVKVNDK--DNRLAGAEFVIANADNAGQYLARKADKVSQEEKQLVVTTKDALDRA 320 (444)
T ss_dssp EEEECCCCCCCBCCCCCEEECEEEEEEEECTT--CCBCSCCEEEEESSSSSSCEEEECGGGSCHHHHHHHHHHHHHHHHH
T ss_pred EeccccccccccccccceEEeeeEEEEEECCC--CCCcCCcEEEEEecCCCCcEEeeecccccccccccccccceeeeec
Confidence 1 223689999999885 599999999998665 2
Q ss_pred -------------------------------------ee----------eceeecCCceEEEecCCCcceEEeec--cCc
Q 001065 887 -------------------------------------YR----------NNSVSWAGGSFHFDNLFPGNFYLRPL--LKE 917 (1167)
Q Consensus 887 -------------------------------------~r----------~n~~T~~~G~~~f~~L~PG~Y~~~~~--~ke 917 (1167)
|. ..+.||++|.|.|.+|.||.|+|+++ +.+
T Consensus 321 p~gY~~~t~e~~~~~~~~kid~~~~~l~gA~~~~~~~~~~~~~~~~~~~~~~~td~~G~~~~~~L~~G~Y~l~EtkAP~G 400 (444)
T 2x9x_A 321 VAAYNALTAQQQTQQEKEKVDKAQAAYNAAVIAANNAFEWVADKDNENVVKLVSDAQGRFEITGLLAGTYYLEETKQPAG 400 (444)
T ss_dssp HHHHHTSCCC------CHHHHHHHHHHHHHHHHHCSSEEEESCTTCTTBCCEECCTTCEEEEEEECSEEEEEEEEECCTT
T ss_pred ccccccccccccccceeeeecccccccccceeecccceeeccccccCceeEEEECCCCeEEECCCCCceEEEEEeeCCCC
Confidence 10 24789999999999999999999987 689
Q ss_pred cccCCCceeEEecCCcE
Q 001065 918 YAFSPPAQAIELGSGES 934 (1167)
Q Consensus 918 y~~~p~~~~i~v~~G~~ 934 (1167)
|.+...++.|+|.+++.
T Consensus 401 Y~l~~~~~~f~i~~~~~ 417 (444)
T 2x9x_A 401 YALLTSRQKFEVTATSY 417 (444)
T ss_dssp SCCCCSCEEEEECTTTT
T ss_pred cccCCCcEEEEEeCCcc
Confidence 99999999999988753
No 7
>2xtl_A Cell WALL surface anchor family protein; GRAM-positive PILI protein, BP-2A 515 allele, immunoglobulin domains, structural protein; 1.75A {Streptococcus agalactiae}
Probab=98.82 E-value=5.3e-09 Score=123.41 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=135.7
Q ss_pred CCCCC--eEEEEEeccchhhhhcccCceeE---EEEeCCCceEEeCCCCCCceEEEEEcCCCeEEeee----CCceeEE-
Q 001065 785 PPLSG--VNIRIIAAEDSQIASLKKGHLAL---ETSTGADGSFIGGPLYDDITYNVEASKPGYYLRQV----GPNSFSC- 854 (1167)
Q Consensus 785 p~l~g--v~i~i~~~~~~~~~~~~~g~~~~---~~~Td~~G~f~~~~L~~~~~y~i~a~k~gy~~~~~----~~~~f~~- 854 (1167)
.+|+| |.|+|..++.. ..+.. ++.++.+|++.|..|.....|.+...+.||.++-. +.....+
T Consensus 177 ~~L~G~~A~F~L~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~~g~Y~~~Et~~GY~~~~~~~~~g~iti~n~ 249 (452)
T 2xtl_A 177 KADETVDAVFTLQVKDGD-------KWVNVDSAKATAATSFKHTFENLDNAKTYRVIERVSGYAPEYVSFVNGVVTIKNN 249 (452)
T ss_dssp EEEEEEEEEEEEEEEETT-------EEEEEEEEEEEEESCEEEEECSCCTTSCEEEEEECSSSEEEEEEEETTEEEEEEE
T ss_pred ccCCCceEEEEEEECCCc-------eEEEeccceeeecccceEEEccCCCCccEEEEEeeCCcccceeccccceEEEecc
Confidence 47888 99999876432 11111 34578999999999986568999988899998621 0111111
Q ss_pred ---------------EeeeEEEEEEEccCCCCCcccceEEEEECCcc-eeeceeecCCceEEEecCCCcceEEeeccCcc
Q 001065 855 ---------------QKLSQISVRIYSKDDAGEPIPSVLLSLSGDDG-YRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEY 918 (1167)
Q Consensus 855 ---------------~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~-~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key 918 (1167)
...|++.+.++|++ .+++|+||.|.|.. ++ |.. +.+|++|++.+.+|+||+|.+....+.|
T Consensus 250 k~~~~p~p~~p~~~~v~tg~~~~~KvD~~-~~~~L~GA~F~l~~-~g~~~~-~~t~~~g~~~~~~l~~~~~~~~kAp~gY 326 (452)
T 2xtl_A 250 KDSNEPTPINPSEPKVVTYGRKFVKTNKD-GKERLAGATFLVKK-DGKYLA-RKSGVATDAEKAAVDSTKSALDAAVKAY 326 (452)
T ss_dssp ECTTSCCCBCCCCCEEECEEEEEEEECSS-SSCBCSCCEEEEEE-TTEEEE-EECCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCccccCCCcceEEEccEEEEEECCC-CCcccCCCEEEEEE-CCEEEE-EeeccccceeecccCcchhhhhhcchhh
Confidence 22689999999875 35899999999977 44 555 8899999999999999998776556778
Q ss_pred ccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEE-----c---CCCCccCcc--EEEEEeCC-CCeeeEEeecCcceEE
Q 001065 919 AFSPPAQAIELGSGESREVIFQATRVAYSATGTIT-----L---LSGQPKDGV--SVEARSES-KGYYEETVTDTSGSYR 987 (1167)
Q Consensus 919 ~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~-----~---~~g~p~~gv--~v~~~~~~-~~~~~~~~Td~~G~~~ 987 (1167)
...-..+ +.+ ..|+|. + -.+..+.|+ .|+.++.. .......+||++|+|.
T Consensus 327 ~~~~~~~----~~~---------------~~G~~~~~k~d~~~~~~~~~l~~a~~~f~~~~~~~~~~~~~~ttd~~G~~~ 387 (452)
T 2xtl_A 327 NDLTKEK----QEG---------------QDGKSALATVSEKQKAYNDAFVKANYSYEWVEDKNAKNVVKLISNDKGQFE 387 (452)
T ss_dssp HTSCHHH----HTS---------------HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCTTCTTBCCEECCTTSEEE
T ss_pred hcccccc----ccc---------------cccceEEEEecccccccchhhhccccceEEeccCCCcceeEEEeCCCCeEE
Confidence 6431000 000 011110 0 012334444 58887653 4456789999999999
Q ss_pred EcCCCCCCEEEEEEEeccCC
Q 001065 988 LRGLHPDTTYVIKVVKKDGF 1007 (1167)
Q Consensus 988 i~gL~pg~~y~v~~~~~~~~ 1007 (1167)
|.||.||+||.++++++++|
T Consensus 388 ~~~L~~G~Y~l~EtkAP~GY 407 (452)
T 2xtl_A 388 ITGLTEGQYSLEETQAPTGY 407 (452)
T ss_dssp EEEECSEEEEEEEEECCTTB
T ss_pred ECCCCCceEEEEEeeCCCCc
Confidence 99999999999999998764
No 8
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=98.73 E-value=3.3e-06 Score=101.30 Aligned_cols=296 Identities=15% Similarity=0.144 Sum_probs=169.3
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEE--EEEEeCCCceEEEc--cccCceEEEEEEcCCceeEeecceE
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLI--SSVITSSEGSYLFK--NIIPGKYKLRASHPNLSVEVRGSTE 202 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i--~~ttTd~~G~f~f~--~l~pG~Y~l~~~~~g~~~~~~~~~~ 202 (1167)
.+.-+|++. ++.|++|..|.+...+|... .+.+||++|.+.+. .-.+|.|.|.++..+-.. +..
T Consensus 29 ~ltatV~D~--------~Gnpv~g~~Vtf~~~~g~~~~~~t~~Td~~G~a~~tltst~aG~~~VtAt~~g~s~----s~~ 96 (492)
T 1cwv_A 29 TVEFTVADF--------EGKPLAGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQ----SVD 96 (492)
T ss_dssp EEEEEEECT--------TSCBCCSCEEEEECCTTCBSCEEEEECCTTSEEEEEEBCSSCEEEEEEEEETTEEE----EEE
T ss_pred EEEEEEEcC--------CCCCCCCCEEEEEECCCccccccceeeCCCceEEEEEEcCcceEEEEEEEECCccc----eeE
Confidence 456677765 36899999999986666432 46789999999876 347999999998876432 233
Q ss_pred EEEccCCee-------Ee-eeeeccc---eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEe
Q 001065 203 VELGFENGE-------VD-DIFFAPG---YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVS 270 (1167)
Q Consensus 203 V~v~~~~~~-------~~-~~l~~~G---~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~T 270 (1167)
|++.++... +. ......| ..+.-+|.+ .|+||+|..|.+....+ .+...++
T Consensus 97 v~f~a~~~~a~~s~l~~~~~~~~A~g~~~~tltatv~Da~GNpv~g~~Vtf~~~~g-----------------~~~~~Tt 159 (492)
T 1cwv_A 97 THFVKGTIAADKSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLG-----------------NMGVITD 159 (492)
T ss_dssp EEEECCCBCGGGCEEEEESSEEETTSSCCEEEEEECBBTTSCBCCSCCEEEEESSS-----------------EECCCEE
T ss_pred EEEeeccCcccceeEEEeccceecCCceeEEEEEEEEcCCCCCcCCcEEEEEECCC-----------------ceeeeEe
Confidence 444333211 11 1122222 345555554 59999999999876421 1234567
Q ss_pred CCCCeEEE--cccCCccEEEEEEEecCCeEEEecCceEEEEEec------cceeee-eeeEE---eceEEEEEEEeCCCC
Q 001065 271 DADGKFMF--KSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRH------QHVTVP-EKFQV---TGFSVGGRVVDENDM 338 (1167)
Q Consensus 271 D~~G~f~f--~~LppG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~------~~~~l~-~~f~~---~g~sV~G~V~d~~G~ 338 (1167)
|++|.+++ ....+|.|+|.+...+... ...+..+.|.... ..+.+. ..... ....+.-+|.|.+|+
T Consensus 160 d~~G~at~tlts~~aG~~tVtA~v~g~~~--~~~s~~vtf~a~~~~~~~~~~l~v~~~~~~A~g~~~~tltatv~D~~GN 237 (492)
T 1cwv_A 160 HNDGTYSAPLTSTTLGVATVTVKVDGAAF--SVPSVTVNFTADPIPDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGH 237 (492)
T ss_dssp CSSSEEEEEEECSSCEEEEEEEEETTEEE--EEEEEEEEEECCSSCCTTTCEEEESCSEEETTSCCCEEEEEECBCTTSC
T ss_pred cCCcEEEEEEEccCceEEEEEEEECCccc--cccceEEEEEccCccccceeeEeecccceeeCCcceEEEEEEEECCCCC
Confidence 99999876 4457899999997544321 0011111221110 001110 11111 124678889999999
Q ss_pred ceeceE-EEE--cceee---eEeCCCceEEECc--CCCccEEEEEEecccccccee-eEEEcCCcceeceEEEEeeEEEE
Q 001065 339 GVEGVK-ILV--DGHER---SITDRDGYYKLDQ--VTSNRYTIEAVKVHYKFNKLK-EYMVLPNMASIADIKAISYDICG 409 (1167)
Q Consensus 339 pl~Ga~-V~l--~G~~~---~~TD~dG~y~~~~--L~pG~Y~I~~~~~~y~~~~~~-~v~v~p~~~~i~dI~~~~~~V~G 409 (1167)
||+|.. |.+ +|..+ ..||.+|.|+..- -.+|.++|.+...+......+ .+.+.+.. .+..|.+ -|
T Consensus 238 pv~g~~~V~f~~~G~~v~~s~~T~~~G~~t~t~t~~~aG~~tVtA~~~g~~~~~~~~~i~f~~~~-~~~~i~v-----ng 311 (492)
T 1cwv_A 238 FISGMQGLSFTQNGVPVSISPITEQPDSYTATVVGNSVGDVTITPQVDTLILSTLQKKISLFPVP-TLTGILV-----NG 311 (492)
T ss_dssp BCCSCCSEEEEEEESCCEECCCEECSSCEEEEEECSSCEEEEEEEEETTEECGGGCEEEEEECCC-CEEEEEE-----TT
T ss_pred CccCCceEEEecCCceeeeeeEecCCceEEEEEEcCcceEEEEEEEECCcccccccceEEEEeec-ccceEEe-----cc
Confidence 999987 776 55433 3689999988742 257899999988764433221 24444321 1222221 11
Q ss_pred EEEEcCC------cccEEEEEE-cCC--Cccc-------ceeeeecCCeEEEEE-EcCeeEEEEEEe
Q 001065 410 VVRTVGS------GNKVKVALT-HGP--DKVK-------PQVKQTDNNGNFCFE-VPPGEYRLSAMA 459 (1167)
Q Consensus 410 ~V~~~~~------~~~a~VtL~-~~~--~~~~-------~~~~~Td~~G~f~f~-L~pG~Y~v~~~~ 459 (1167)
.-...+. -..+.+++. ++. .+.. .....+|++|.-.|. -..+..+|.+..
T Consensus 312 ~~~~~~~gfP~tgf~~A~f~~~~~~~~~~n~~y~wsss~~~~~tvd~~G~vt~~~~~~~~vtITat~ 378 (492)
T 1cwv_A 312 QNFATDKGFPKTIFKNATFQLQMDNDVANNTQYEWSSSFTPNVSVNDQGQVTITYQTYSEVAVTAKS 378 (492)
T ss_dssp EEECTTSCCCSEEETTCEEEEEETTCGGGGGGEEEEESSTTTEEECTTCEEEECSCCSSCEEEEEEE
T ss_pred ccccccCCCCceeEEeEEEEEecCCccccCCceeecccCcceEEECCCceEEEEecCCCEEEEEEEe
Confidence 1111110 123444443 111 0000 135678999999998 544557777765
No 9
>2y1v_A RRGB, cell WALL surface anchor family protein; structural protein, major pilin, pilus assembly; 2.39A {Streptococcus pneumoniae} PDB: 3rpk_A
Probab=98.67 E-value=1e-07 Score=116.65 Aligned_cols=147 Identities=12% Similarity=0.138 Sum_probs=105.5
Q ss_pred eeEEEEEEEccCCC-CCcccc--eEEEEECCcc---eeeceeecCCceEEEecC-CCcceEEeec-cCccccCC----Cc
Q 001065 857 LSQISVRIYSKDDA-GEPIPS--VLLSLSGDDG---YRNNSVSWAGGSFHFDNL-FPGNFYLRPL-LKEYAFSP----PA 924 (1167)
Q Consensus 857 l~~i~~~v~~~~~~-~~pl~g--vllslsg~~~---~r~n~~T~~~G~~~f~~L-~PG~Y~~~~~-~key~~~p----~~ 924 (1167)
.|+|.|++.|+++. ..+|+| |.|.|...+. ......++.+|++.|.+| .||+|+|++. +.+|.++- .+
T Consensus 314 ~G~v~l~K~d~~g~~~~~L~G~~A~F~l~~~~~~~~~~~~~~~~~~~~~~f~~L~~~g~Y~~~Et~a~GY~l~~~~~~~~ 393 (605)
T 2y1v_A 314 NGDLTLTKTWVDATGAPIPAGAEATFDLVNAQTGKVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSIKGYSADYQEITTA 393 (605)
T ss_dssp TSCEEEEEEEEETTSCBCCCCSCEEEEEEETTTCCEEEEEEECTTCCEEEECSCCTTSCEEEEECCBTTBEEEECCCCST
T ss_pred cceEEEEEecCCCCcccccCCceEEEEEEECCCCeEEEeeeccCCceEEEEecCCCCccEEEEEeecCceeccccccccc
Confidence 79999999887521 239999 9999987642 233456788999999999 9999999975 37887663 44
Q ss_pred eeEEecCCcE--------EEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEEeCC--CCee-------------------
Q 001065 925 QAIELGSGES--------REVIFQATRVAYSATGTITLLSGQPKDGVSVEARSES--KGYY------------------- 975 (1167)
Q Consensus 925 ~~i~v~~G~~--------~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~~~--~~~~------------------- 975 (1167)
..|+|+..+. ....+. .....+=||++- +++|+||.|++.+.+ +.+.
T Consensus 394 ~~vti~n~~~~~p~~~~~~~~~v~---tg~v~~~KvD~~-~~~L~GA~F~l~~~~~~g~~~~~k~~~~t~~~g~~l~~g~ 469 (605)
T 2y1v_A 394 GEIAVKNWKDENPKPLDPTEPKVV---TYGKKFVKVNDK-DNRLAGAEFVIANADNAGQYLARKADKVSQEEKQLVVTTK 469 (605)
T ss_dssp TEEEEEEEECCCCCCBCCCCCEEE---CEEEEEEEECTT-CCBCCCCEEEEESSSSSSCEEECCGGGSCHHHHHHHHHHH
T ss_pred eEEEEeeccccCccccccCcceEE---eeeEEEEEECCC-CCCcCCCEEEEEecCCCCcEEEeccccccccccccccccc
Confidence 5555554322 001110 012234566654 499999999998654 2222
Q ss_pred -------------------------------------------------------eEEeecCcceEEEcCCCCCCEEEEE
Q 001065 976 -------------------------------------------------------EETVTDTSGSYRLRGLHPDTTYVIK 1000 (1167)
Q Consensus 976 -------------------------------------------------------~~~~Td~~G~~~i~gL~pg~~y~v~ 1000 (1167)
...+||++|.|.|.||.+|.||.++
T Consensus 470 y~~~ea~~gY~~~~~~~~~~~~~~kvd~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~t~~~G~~~~~~L~~G~Y~l~E 549 (605)
T 2y1v_A 470 DALDRAVAAYNALTAQQQTQQEKEKVDKAQAAYNAAVIAANNAFEWVADKDNENVVKLVSDAQGRFEITGLLAGTYYLEE 549 (605)
T ss_dssp HHHHHHHHHHHTSCTTTCCHHHHHHHHHHHHHHHHHHHHHCSSCEEESCTTSTTBCCEECCTTCEEEEEEECSEEEEEEE
T ss_pred ceeccccccccccccccccceeeeeeccccccccchhhccccceEEecccccccceeEeeCCCCEEEECCCCCceEEEEE
Confidence 2578999999999999999999999
Q ss_pred EEeccCC
Q 001065 1001 VVKKDGF 1007 (1167)
Q Consensus 1001 ~~~~~~~ 1007 (1167)
++++++|
T Consensus 550 tkAP~GY 556 (605)
T 2y1v_A 550 TKQPAGY 556 (605)
T ss_dssp EECCTTS
T ss_pred eeCCCCc
Confidence 9998865
No 10
>2y1v_A RRGB, cell WALL surface anchor family protein; structural protein, major pilin, pilus assembly; 2.39A {Streptococcus pneumoniae} PDB: 3rpk_A
Probab=98.61 E-value=5.5e-07 Score=110.28 Aligned_cols=144 Identities=17% Similarity=0.240 Sum_probs=108.0
Q ss_pred eccccCCCCC--eEEEEEeccchhhhhcccCceeEEEEeCCCceEEeCCCCCCceEE--EEEcCCCeEEeee---CCcee
Q 001065 780 EGSVSPPLSG--VNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYN--VEASKPGYYLRQV---GPNSF 852 (1167)
Q Consensus 780 ~G~v~p~l~g--v~i~i~~~~~~~~~~~~~g~~~~~~~Td~~G~f~~~~L~~~~~y~--i~a~k~gy~~~~~---~~~~f 852 (1167)
.|....+|+| |.|+|.++++. ..+...+.++.+|++.|..|.+...|. ++.+ +||.++.. .++.|
T Consensus 325 ~g~~~~~L~G~~A~F~l~~~~~~-------~~~~~~~~~~~~~~~~f~~L~~~g~Y~~~Et~a-~GY~l~~~~~~~~~~v 396 (605)
T 2y1v_A 325 DATGAPIPAGAEATFDLVNAQTG-------KVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSI-KGYSADYQEITTAGEI 396 (605)
T ss_dssp ETTSCBCCCCSCEEEEEEETTTC-------CEEEEEEECTTCCEEEECSCCTTSCEEEEECCB-TTBEEEECCCCSTTEE
T ss_pred CCCcccccCCceEEEEEEECCCC-------eEEEeeeccCCceEEEEecCCCCccEEEEEeec-CceeccccccccceEE
Confidence 3444468999 99999987642 123456678889999999995434554 5556 99999851 12222
Q ss_pred --E---------------EEeeeEEEEEEEccCCCCCcccceEEEEECCc--c-e-------------------------
Q 001065 853 --S---------------CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDD--G-Y------------------------- 887 (1167)
Q Consensus 853 --~---------------~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~--~-~------------------------- 887 (1167)
. ....|++.+.++|++ +++|+||.|.|...+ + |
T Consensus 397 ti~n~~~~~p~~~~~~~~~v~tg~v~~~KvD~~--~~~L~GA~F~l~~~~~~g~~~~~k~~~~t~~~g~~l~~g~y~~~e 474 (605)
T 2y1v_A 397 AVKNWKDENPKPLDPTEPKVVTYGKKFVKVNDK--DNRLAGAEFVIANADNAGQYLARKADKVSQEEKQLVVTTKDALDR 474 (605)
T ss_dssp EEEEEECCCCCCBCCCCCEEECEEEEEEEECTT--CCBCCCCEEEEESSSSSSCEEECCGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEeeccccCccccccCcceEEeeeEEEEEECCC--CCCcCCCEEEEEecCCCCcEEEecccccccccccccccccceecc
Confidence 1 123589999999885 499999999998765 2 1
Q ss_pred ---------------------------------------e----------eceeecCCceEEEecCCCcceEEeec--cC
Q 001065 888 ---------------------------------------R----------NNSVSWAGGSFHFDNLFPGNFYLRPL--LK 916 (1167)
Q Consensus 888 ---------------------------------------r----------~n~~T~~~G~~~f~~L~PG~Y~~~~~--~k 916 (1167)
. ..++||++|.|.|.+|.+|.|+|++. ..
T Consensus 475 a~~gY~~~~~~~~~~~~~~kvd~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~t~~~G~~~~~~L~~G~Y~l~EtkAP~ 554 (605)
T 2y1v_A 475 AVAAYNALTAQQQTQQEKEKVDKAQAAYNAAVIAANNAFEWVADKDNENVVKLVSDAQGRFEITGLLAGTYYLEETKQPA 554 (605)
T ss_dssp HHHHHHTSCTTTCCHHHHHHHHHHHHHHHHHHHHHCSSCEEESCTTSTTBCCEECCTTCEEEEEEECSEEEEEEEEECCT
T ss_pred ccccccccccccccceeeeeeccccccccchhhccccceEEecccccccceeEeeCCCCEEEECCCCCceEEEEEeeCCC
Confidence 1 24689999999999999999999987 67
Q ss_pred ccccCCCceeEEecCCc
Q 001065 917 EYAFSPPAQAIELGSGE 933 (1167)
Q Consensus 917 ey~~~p~~~~i~v~~G~ 933 (1167)
+|.+...++.|+|.++.
T Consensus 555 GY~l~~~~~~f~i~~~~ 571 (605)
T 2y1v_A 555 GYALLTSRQKFEVTATS 571 (605)
T ss_dssp TSCCCSSCEEEEECTTT
T ss_pred CcccCCCcEEEEEcCCc
Confidence 99999999999999874
No 11
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP: b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Probab=98.41 E-value=3.1e-05 Score=92.81 Aligned_cols=299 Identities=14% Similarity=0.144 Sum_probs=161.3
Q ss_pred CcccceEEEEEeCCCcEE--EeEEecCCcEEEeC--CCCCccEEEEEEcCCCcccCCceEEEEEcCCCcCCcceeeEEE-
Q 001065 49 LDYSHVTVELRTLDGLVK--ESTQCAPNGYYFIP--VYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRF- 123 (1167)
Q Consensus 49 i~~sgv~v~L~~~~G~~~--~~t~t~~nG~y~~~--~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~~~~s~~~dinf~~- 123 (1167)
-+++|.+|.+...+|.+. .+..|+++|.+.+. ...+|.|.|.++.. |- .....+.+..+... .....|..
T Consensus 40 npv~g~~Vtf~~~~g~~~~~~t~~Td~~G~a~~tltst~aG~~~VtAt~~-g~---s~s~~v~f~a~~~~-a~~s~l~~~ 114 (492)
T 1cwv_A 40 KPLAGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVE-GQ---RQSVDTHFVKGTIA-ADKSTLAAV 114 (492)
T ss_dssp CBCCSCEEEEECCTTCBSCEEEEECCTTSEEEEEEBCSSCEEEEEEEEET-TE---EEEEEEEEECCCBC-GGGCEEEEE
T ss_pred CCCCCCEEEEEECCCccccccceeeCCCceEEEEEEcCcceEEEEEEEEC-Cc---cceeEEEEeeccCc-ccceeEEEe
Confidence 356799998876667653 34578899988843 35799999988864 32 23344454433111 11112221
Q ss_pred ------eC---cEEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEc--cccCceEEEEEEcCC
Q 001065 124 ------TG---FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFK--NIIPGKYKLRASHPN 192 (1167)
Q Consensus 124 ------~g---~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~--~l~pG~Y~l~~~~~g 192 (1167)
.| ..+.-+|++. .+.|++|+.|.+....|. +...+||++|.+++. ...+|.|.|.++..+
T Consensus 115 ~~~~~A~g~~~~tltatv~Da--------~GNpv~g~~Vtf~~~~g~-~~~~Ttd~~G~at~tlts~~aG~~tVtA~v~g 185 (492)
T 1cwv_A 115 PTSIIADGLMASTITLELKDT--------YGDPQAGANVAFDTTLGN-MGVITDHNDGTYSAPLTSTTLGVATVTVKVDG 185 (492)
T ss_dssp SSEEETTSSCCEEEEEECBBT--------TSCBCCSCCEEEEESSSE-ECCCEECSSSEEEEEEECSSCEEEEEEEEETT
T ss_pred ccceecCCceeEEEEEEEEcC--------CCCCcCCcEEEEEECCCc-eeeeEecCCcEEEEEEEccCceEEEEEEEECC
Confidence 11 2344444443 479999999998766664 345667999998875 347899999999887
Q ss_pred ceeEeecceEEEEccCC------e--eEee-eeeccc---eEEeeEEEe-CCCceeceE-EEEEECCCCcccCCCCCCCc
Q 001065 193 LSVEVRGSTEVELGFEN------G--EVDD-IFFAPG---YEIRGLVVA-QGNPILGVH-IYLYSDDVGKVDCPQGSGNA 258 (1167)
Q Consensus 193 ~~~~~~~~~~V~v~~~~------~--~~~~-~l~~~G---~~isG~V~~-~g~Pl~Ga~-V~L~~~~~~~~~c~~g~~~~ 258 (1167)
.... ..+..|++.++. . .+.. .....| ..+.-+|.+ .|+||+|.. |.+.....
T Consensus 186 ~~~~-~~s~~vtf~a~~~~~~~~~~l~v~~~~~~A~g~~~~tltatv~D~~GNpv~g~~~V~f~~~G~------------ 252 (492)
T 1cwv_A 186 AAFS-VPSVTVNFTADPIPDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGV------------ 252 (492)
T ss_dssp EEEE-EEEEEEEEECCSSCCTTTCEEEESCSEEETTSCCCEEEEEECBCTTSCBCCSCCSEEEEEEES------------
T ss_pred cccc-ccceEEEEEccCccccceeeEeecccceeeCCcceEEEEEEEECCCCCCccCCceEEEecCCc------------
Confidence 7643 122445544332 1 1111 112222 245556664 599999987 76653311
Q ss_pred ccccceeeEEEeCCCCeEEEc--ccCCccEEEEEEEecCCe-----EEEecCc--eEEEEEeccceeeeeeeEEeceE-E
Q 001065 259 LGERKALCHAVSDADGKFMFK--SVPCGQYELVPHYKGENT-----VFDVSPS--LVSMSVRHQHVTVPEKFQVTGFS-V 328 (1167)
Q Consensus 259 ~~~g~~~~~~~TD~~G~f~f~--~LppG~Y~v~~~~~~~~~-----~~~~~P~--~~~vtV~~~~~~l~~~f~~~g~s-V 328 (1167)
.......||++|.|... .-.+|.++|.+...+... ...+.+. ...+.+..........|.-.+|. .
T Consensus 253 ----~v~~s~~T~~~G~~t~t~t~~~aG~~tVtA~~~g~~~~~~~~~i~f~~~~~~~~i~vng~~~~~~~gfP~tgf~~A 328 (492)
T 1cwv_A 253 ----PVSISPITEQPDSYTATVVGNSVGDVTITPQVDTLILSTLQKKISLFPVPTLTGILVNGQNFATDKGFPKTIFKNA 328 (492)
T ss_dssp ----CCEECCCEECSSCEEEEEECSSCEEEEEEEEETTEECGGGCEEEEEECCCCEEEEEETTEEECTTSCCCSEEETTC
T ss_pred ----eeeeeeEecCCceEEEEEEcCcceEEEEEEEECCcccccccceEEEEeecccceEEeccccccccCCCCceeEEeE
Confidence 11123458999998754 334789999986543210 0111110 00111110000000001111111 1
Q ss_pred EEEEEeCCCCceeceEEEE--cceeeeEeCCCceEEECcCCCccEEEEEEecc
Q 001065 329 GGRVVDENDMGVEGVKILV--DGHERSITDRDGYYKLDQVTSNRYTIEAVKVH 379 (1167)
Q Consensus 329 ~G~V~d~~G~pl~Ga~V~l--~G~~~~~TD~dG~y~~~~L~pG~Y~I~~~~~~ 379 (1167)
.-++.. ++.++.+..+.. +....+++|++|.-+|..-..+..+|++...+
T Consensus 329 ~f~~~~-~~~~~~n~~y~wsss~~~~~tvd~~G~vt~~~~~~~~vtITat~~~ 380 (492)
T 1cwv_A 329 TFQLQM-DNDVANNTQYEWSSSFTPNVSVNDQGQVTITYQTYSEVAVTAKSKK 380 (492)
T ss_dssp EEEEEE-TTCGGGGGGEEEEESSTTTEEECTTCEEEECSCCSSCEEEEEEESS
T ss_pred EEEEec-CCccccCCceeecccCcceEEECCCceEEEEecCCCEEEEEEEeCC
Confidence 112222 344444443333 21122588999999997655566888887654
No 12
>2xtl_A Cell WALL surface anchor family protein; GRAM-positive PILI protein, BP-2A 515 allele, immunoglobulin domains, structural protein; 1.75A {Streptococcus agalactiae}
Probab=98.36 E-value=1.4e-06 Score=102.91 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=99.7
Q ss_pred CCCcc--eEEEEEeCCCcE-EE----EEEeCCCceEEEcccc-CceEEEEEEcCCceeEee--cceEEEEccCCe----e
Q 001065 146 GGPSN--VNVELLSHSGDL-IS----SVITSSEGSYLFKNII-PGKYKLRASHPNLSVEVR--GSTEVELGFENG----E 211 (1167)
Q Consensus 146 ~plaG--v~V~L~~~~g~~-i~----~ttTd~~G~f~f~~l~-pG~Y~l~~~~~g~~~~~~--~~~~V~v~~~~~----~ 211 (1167)
.+|+| |.|+|++.++.. .. ..+++.+|.+.|.+|. ||.|+|.+...||.+... ....+++..... .
T Consensus 177 ~~L~G~~A~F~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~Y~~~Et~~GY~~~~~~~~~g~iti~n~k~~~~p~ 256 (452)
T 2xtl_A 177 KADETVDAVFTLQVKDGDKWVNVDSAKATAATSFKHTFENLDNAKTYRVIERVSGYAPEYVSFVNGVVTIKNNKDSNEPT 256 (452)
T ss_dssp EEEEEEEEEEEEEEEETTEEEEEEEEEEEEESCEEEEECSCCTTSCEEEEEECSSSEEEEEEEETTEEEEEEEECTTSCC
T ss_pred ccCCCceEEEEEEECCCceEEEeccceeeecccceEEEccCCCCccEEEEEeeCCcccceeccccceEEEeccccccCcc
Confidence 48999 999999876532 22 2347899999999997 999999999999976421 112233321100 0
Q ss_pred -E--eeeeeccc-eEEeeEEEeC-CCceeceEEEEEECCCCcccCCCC--------------------------------
Q 001065 212 -V--DDIFFAPG-YEIRGLVVAQ-GNPILGVHIYLYSDDVGKVDCPQG-------------------------------- 254 (1167)
Q Consensus 212 -~--~~~l~~~G-~~isG~V~~~-g~Pl~Ga~V~L~~~~~~~~~c~~g-------------------------------- 254 (1167)
+ ...-...| ..+. +|..+ +.+|+||.|.|.+ ++..+.....
T Consensus 257 p~~p~~~~v~tg~~~~~-KvD~~~~~~L~GA~F~l~~-~g~~~~~~t~~~g~~~~~~l~~~~~~~~kAp~gY~~~~~~~~ 334 (452)
T 2xtl_A 257 PINPSEPKVVTYGRKFV-KTNKDGKERLAGATFLVKK-DGKYLARKSGVATDAEKAAVDSTKSALDAAVKAYNDLTKEKQ 334 (452)
T ss_dssp CBCCCCCEEECEEEEEE-EECSSSSCBCSCCEEEEEE-TTEEEEEECCSCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred ccCCCcceEEEccEEEE-EECCCCCcccCCCEEEEEE-CCEEEEEeeccccceeecccCcchhhhhhcchhhhccccccc
Confidence 0 00001111 1111 33333 4799999999977 4322110000
Q ss_pred -------------------------CC--C--c-ccccceeeEEEeCCCCeEEEcccCCccEEEEEEEecCCeEEEecCc
Q 001065 255 -------------------------SG--N--A-LGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPS 304 (1167)
Q Consensus 255 -------------------------~~--~--~-~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~~~~~~~~~P~ 304 (1167)
+. . . ..........+||++|.|.|.+|++|.|+|.+..++.++. +...
T Consensus 335 ~~~~G~~~~~k~d~~~~~~~~~l~~a~~~f~~~~~~~~~~~~~~ttd~~G~~~~~~L~~G~Y~l~EtkAP~GY~--l~~~ 412 (452)
T 2xtl_A 335 EGQDGKSALATVSEKQKAYNDAFVKANYSYEWVEDKNAKNVVKLISNDKGQFEITGLTEGQYSLEETQAPTGYA--KLSG 412 (452)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCTTCTTBCCEECCTTSEEEEEEECSEEEEEEEEECCTTBC--CCSS
T ss_pred cccccceEEEEecccccccchhhhccccceEEeccCCCcceeEEEeCCCCeEEECCCCCceEEEEEeeCCCCcc--cCCC
Confidence 00 0 0 0000123568999999999999999999999987666543 4445
Q ss_pred eEEEEEeccc
Q 001065 305 LVSMSVRHQH 314 (1167)
Q Consensus 305 ~~~vtV~~~~ 314 (1167)
.+.|+|..++
T Consensus 413 ~~~f~i~~~~ 422 (452)
T 2xtl_A 413 DVSFNVNATS 422 (452)
T ss_dssp CEEEEECTTT
T ss_pred CEEEEEeCCc
Confidence 5788887654
No 13
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Probab=98.32 E-value=4.7e-07 Score=105.93 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=67.8
Q ss_pred EeecceeeeccccccccccCCCCCcccceEEEEEeCCCcEEEeEEecCCcEEEeCCCCCccEEEEEEcCCCcccCCce
Q 001065 26 HGCGGFVEASSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDKGSFVIKVNGPEGWSWNPDK 103 (1167)
Q Consensus 26 ~gcgGfv~~~~~~~~~~~~sd~~i~~sgv~v~L~~~~G~~~~~t~t~~nG~y~~~~l~~G~Y~l~~~~P~G~~~~p~~ 103 (1167)
.+.|||||.+ .++|.++...+.+++||+|.|++++|.++.+++|+++|+|.|..|+||.|+|++.+|+||.+.+..
T Consensus 306 ~~igg~Vw~D--~n~nG~~D~~e~gl~gv~v~L~d~~G~~v~tttTd~~G~Y~F~~L~~G~Y~V~~~~P~Gy~~t~~~ 381 (429)
T 3irp_X 306 GGFGGYVWFD--KNNDGVQNDSNAAAAGITVNLLDPTGIRLATTTTDITGHYNFDNLTNGNYLVEFVMPEGYIPTQAN 381 (429)
T ss_dssp EEEEEEEEEC--TTSSSSSCCSSCBCTTCEEEEECTTSCEEEEEECCTTSEEEEEEEESEEEEEEECCCTTEEECCSS
T ss_pred EEEccEEEEe--CCCCCCcCcCCCCcCCeEEEEEcCCCCEEEEEEeCCCCeEEeCCCCCCcEEEEEECCCCCEEcCCC
Confidence 6678999866 456777777888999999999999999999999999999999999999999999999999987654
No 14
>3tkv_A FDEC fragment B, attaching and effacing protein, pathogenesis FACT; invasin, intimin, adhesion vaccination, bacterial immunoglob domain; 1.90A {Escherichia coli} PDB: 4e9l_A
Probab=98.31 E-value=4.3e-06 Score=98.31 Aligned_cols=300 Identities=12% Similarity=0.139 Sum_probs=122.7
Q ss_pred CCCCCcceEEEEE----eCCCcEEEEEEeCCCceEEEc--cccCceEEEEEEcCCceeEeecceEEEEccCCee-----E
Q 001065 144 KGGGPSNVNVELL----SHSGDLISSVITSSEGSYLFK--NIIPGKYKLRASHPNLSVEVRGSTEVELGFENGE-----V 212 (1167)
Q Consensus 144 ~~~plaGv~V~L~----~~~g~~i~~ttTd~~G~f~f~--~l~pG~Y~l~~~~~g~~~~~~~~~~V~v~~~~~~-----~ 212 (1167)
+|.|++|..|.+. ..++..+...+++++|.|.+. .-.+|.|.|.+.-.+.... ..+..+.+.++... +
T Consensus 18 ~Gnpv~g~~V~~~~~~~~~~~~tl~~~~~~~~G~~t~tlTst~aG~~~VtA~~~~~~~~-~~~~~v~f~a~~~~a~~s~l 96 (414)
T 3tkv_A 18 EGNPVTGEASRLRLVPQDTNGVTVGAISEIKPGVYSATVSSTRAGNVVVRAFSEQYQLG-TLQQTLKFVAGPLDAAHSSI 96 (414)
T ss_dssp -------------------------------------------------------------------CCCCCCCGGGCEE
T ss_pred CCCCCCCceeEEEEeecCCCCceEcccEEcCCcEEEEEEEccCcceEEEEEEEcCcccc-ccceEEEEEcCCCccceEEE
Confidence 3689999888773 233444566677889999755 4468999999876554221 00112222222110 1
Q ss_pred --eeeeeccce--EEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEE--c-ccCCc
Q 001065 213 --DDIFFAPGY--EIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMF--K-SVPCG 284 (1167)
Q Consensus 213 --~~~l~~~G~--~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f--~-~LppG 284 (1167)
.+.-.+.+. .+.=+|.+ .|+|++|..|.+....+. ...+......+++.+|.|.+ . +-.+|
T Consensus 97 ~~~~~~~~A~g~~t~t~~v~Da~gnpv~g~~V~~~~~~g~-----------~~~~~t~~~~t~~~~G~~tatlT~~t~aG 165 (414)
T 3tkv_A 97 TLNPDKPVVGGTVTAIWTAKDANDNPVTGLNPDAPSLSGA-----------AAAGSTASGWTDNGDGTWTAQISLGTTAG 165 (414)
T ss_dssp EEESSSCBTTSEEEEEEECBCTTCCBCCSCCCCCCEEESG-----------GGTTCEECCCEECSSSEEEEEEECCSCCE
T ss_pred EECCCceecCCEEEEEEEEECCCCCCcCCCEEEEEecCCC-----------cccceeccceEECCCcEEEEEEEeccccc
Confidence 111011111 12223433 599999987765432110 00011133457789999854 4 66799
Q ss_pred cEEEEEEEecCCeEEEecCceEEEEEeccc-------eeee-eeeEE-eceEEEEEEEeCCCCceeceEEEE--cc----
Q 001065 285 QYELVPHYKGENTVFDVSPSLVSMSVRHQH-------VTVP-EKFQV-TGFSVGGRVVDENDMGVEGVKILV--DG---- 349 (1167)
Q Consensus 285 ~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~-------~~l~-~~f~~-~g~sV~G~V~d~~G~pl~Ga~V~l--~G---- 349 (1167)
.|.|.+...+... ...|. .+++-.+. +.+. ..+.. ....+.-+|.|.+|+|++|..|.+ ++
T Consensus 166 ~~~Vta~v~g~~~--~~~~~--~vtf~a~~~sa~~s~l~~~~~~~~Ag~~~t~t~~v~Da~GNpv~g~~V~f~~~~~~~~ 241 (414)
T 3tkv_A 166 ELDVMPKLNGQDA--AANAA--KVTVVADALSSNQSKVSVAEDHVKAGESTTVTLVAKDAHGNAISGLSLSASLTGTASE 241 (414)
T ss_dssp EEEEECEETTEEC--SSSCE--EEEEBCCSBCTTTCEEEESCSEEETTCEEEEEEECBBTTCCBCCSCCEEEEEESGGGT
T ss_pred cEEEEEEECCeec--cccce--eEEEEcCCCcceeeEEEEcccceecCCEEEEEEEEEcCCCCCcCCCEEEEEEccCCCC
Confidence 9999997544221 00111 22221111 0000 01110 013566678899999999988877 33
Q ss_pred -eee--eEeCCCceEEEC---cCCCccEEEEEEeccccccc-eeeEEEcCCcceeceEEEE--e--------eEEEEEEE
Q 001065 350 -HER--SITDRDGYYKLD---QVTSNRYTIEAVKVHYKFNK-LKEYMVLPNMASIADIKAI--S--------YDICGVVR 412 (1167)
Q Consensus 350 -~~~--~~TD~dG~y~~~---~L~pG~Y~I~~~~~~y~~~~-~~~v~v~p~~~~i~dI~~~--~--------~~V~G~V~ 412 (1167)
-.+ .+++.+|.|+.. +..+|.|+|.+...+-.... ...+.+.+.......+.+. . ..+.-+|+
T Consensus 242 ~~t~s~~tt~~~G~~~~t~ta~t~aG~~~Vta~v~g~~~~~~~~~vt~~a~~~~~~~s~l~~~~~~~~a~~~~~vt~tv~ 321 (414)
T 3tkv_A 242 GATVSSWTEKGDGSYVATLTTGGKTGELRVMPLFNGQPAATEAAQLTVIAGEMSSANSTLVADNKTPTVKTTTELTFTMK 321 (414)
T ss_dssp TCEECCCEEEETTEEEEEEECCSCCEEEEEEEEETTEECSSSCEEEEEECCSBCTTTCEEEESCSSCBTTCEEEEEEECB
T ss_pred CceecceEECCCcEEEEEEEcCcccceEEEEEEECCEeccccceEEEEecCCccccceEEEeCCceeecCCeEEEEEEEE
Confidence 222 378899999886 55789999999877643321 1245665543222222221 1 13333444
Q ss_pred EcCCc--ccEEEEEE--cCCCc-----ccceeeeecCCeEEEEEEc----CeeEEEEEEe
Q 001065 413 TVGSG--NKVKVALT--HGPDK-----VKPQVKQTDNNGNFCFEVP----PGEYRLSAMA 459 (1167)
Q Consensus 413 ~~~~~--~~a~VtL~--~~~~~-----~~~~~~~Td~~G~f~f~L~----pG~Y~v~~~~ 459 (1167)
+..+. .+..|.+. .+... .......+|.+|.|...|. +|.|+|.+..
T Consensus 322 D~~GNpv~g~~V~f~~~~g~~~~~~~~~t~~~~tt~~~G~~~~tlta~t~aG~~~vta~v 381 (414)
T 3tkv_A 322 DAYGNPVTGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVSTLTLGSAAGQLSVMPRV 381 (414)
T ss_dssp BTTSCBCCSCCCCCCEEESGGGCSSSCCEECCCEEEETTEEEEEEECCSCCEEEEEECEE
T ss_pred eCCCCCCCCcEEEEEecccceeeccCCCccceeEECCCCEEEEEEEccceeeEEEEEEEE
Confidence 44332 33344432 11100 0023457889999999844 5889988887
No 15
>3tkv_A FDEC fragment B, attaching and effacing protein, pathogenesis FACT; invasin, intimin, adhesion vaccination, bacterial immunoglob domain; 1.90A {Escherichia coli} PDB: 4e9l_A
Probab=98.26 E-value=7.7e-06 Score=96.14 Aligned_cols=302 Identities=14% Similarity=0.169 Sum_probs=132.1
Q ss_pred cccceEEEEE----eCCCcEEEeEEecCCcEEE--eCCCCCccEEEEEEcCCCcccCCceEEEEEcCCCcCCcceeeEEE
Q 001065 50 DYSHVTVELR----TLDGLVKESTQCAPNGYYF--IPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRF 123 (1167)
Q Consensus 50 ~~sgv~v~L~----~~~G~~~~~t~t~~nG~y~--~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~~~~s~~~dinf~~ 123 (1167)
+++|..|.+. ..+|-.+....++.+|.|. +-.-.+|.|.|.++.- |.........+.+..+... .....+..
T Consensus 21 pv~g~~V~~~~~~~~~~~~tl~~~~~~~~G~~t~tlTst~aG~~~VtA~~~-~~~~~~~~~~v~f~a~~~~-a~~s~l~~ 98 (414)
T 3tkv_A 21 PVTGEASRLRLVPQDTNGVTVGAISEIKPGVYSATVSSTRAGNVVVRAFSE-QYQLGTLQQTLKFVAGPLD-AAHSSITL 98 (414)
T ss_dssp ----------------------------------------------------------------CCCCCCC-GGGCEEEE
T ss_pred CCCCceeEEEEeecCCCCceEcccEEcCCcEEEEEEEccCcceEEEEEEEc-CccccccceEEEEEcCCCc-cceEEEEE
Confidence 4556666653 2234334444455689888 4444799999976642 1111111122222222100 00001111
Q ss_pred ------eCc--EEEEEEEeccCCccccCCCCCCcceEEEEEeCCCc-----EEEEEEeCCCceEEEc---cccCceEEEE
Q 001065 124 ------TGF--TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGD-----LISSVITSSEGSYLFK---NIIPGKYKLR 187 (1167)
Q Consensus 124 ------~g~--~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~-----~i~~ttTd~~G~f~f~---~l~pG~Y~l~ 187 (1167)
.+- .+.=+|++. ++.|++|..|......|. .....+++.+|.|.+. .-.+|.|.|.
T Consensus 99 ~~~~~~A~g~~t~t~~v~Da--------~gnpv~g~~V~~~~~~g~~~~~~t~~~~t~~~~G~~tatlT~~t~aG~~~Vt 170 (414)
T 3tkv_A 99 NPDKPVVGGTVTAIWTAKDA--------NDNPVTGLNPDAPSLSGAAAAGSTASGWTDNGDGTWTAQISLGTTAGELDVM 170 (414)
T ss_dssp ESSSCBTTSEEEEEEECBCT--------TCCBCCSCCCCCCEEESGGGTTCEECCCEECSSSEEEEEEECCSCCEEEEEE
T ss_pred CCCceecCCEEEEEEEEECC--------CCCCcCCCEEEEEecCCCcccceeccceEECCCcEEEEEEEeccccccEEEE
Confidence 000 111134443 478999977765433332 2445677899998764 4558999999
Q ss_pred EEcCCceeEeecceEEEEccCCee-------EeeeeeccceE--EeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCC
Q 001065 188 ASHPNLSVEVRGSTEVELGFENGE-------VDDIFFAPGYE--IRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGN 257 (1167)
Q Consensus 188 ~~~~g~~~~~~~~~~V~v~~~~~~-------~~~~l~~~G~~--isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~ 257 (1167)
+.-.+-... .....|++.++... +...-...|-. +.-+|.+ .|+|++|..|.+......
T Consensus 171 a~v~g~~~~-~~~~~vtf~a~~~sa~~s~l~~~~~~~~Ag~~~t~t~~v~Da~GNpv~g~~V~f~~~~~~---------- 239 (414)
T 3tkv_A 171 PKLNGQDAA-ANAAKVTVVADALSSNQSKVSVAEDHVKAGESTTVTLVAKDAHGNAISGLSLSASLTGTA---------- 239 (414)
T ss_dssp CEETTEECS-SSCEEEEEBCCSBCTTTCEEEESCSEEETTCEEEEEEECBBTTCCBCCSCCEEEEEESGG----------
T ss_pred EEECCeecc-ccceeEEEEcCCCcceeeEEEEcccceecCCEEEEEEEEEcCCCCCcCCCEEEEEEccCC----------
Confidence 987665432 11235555444321 11111122222 3333333 599999988876543100
Q ss_pred cccccceeeEEEeCCCCeEEEc---ccCCccEEEEEEEecCCe-----EEEecCc-----eEEEEEeccceeeeeeeEEe
Q 001065 258 ALGERKALCHAVSDADGKFMFK---SVPCGQYELVPHYKGENT-----VFDVSPS-----LVSMSVRHQHVTVPEKFQVT 324 (1167)
Q Consensus 258 ~~~~g~~~~~~~TD~~G~f~f~---~LppG~Y~v~~~~~~~~~-----~~~~~P~-----~~~vtV~~~~~~l~~~f~~~ 324 (1167)
..+..+...+++.+|.|+.. +..+|.|+|.+...+... .+.+.|. ...+++......- . .
T Consensus 240 --~~~~t~s~~tt~~~G~~~~t~ta~t~aG~~~Vta~v~g~~~~~~~~~vt~~a~~~~~~~s~l~~~~~~~~a-~----~ 312 (414)
T 3tkv_A 240 --SEGATVSSWTEKGDGSYVATLTTGGKTGELRVMPLFNGQPAATEAAQLTVIAGEMSSANSTLVADNKTPTV-K----T 312 (414)
T ss_dssp --GTTCEECCCEEEETTEEEEEEECCSCCEEEEEEEEETTEECSSSCEEEEEECCSBCTTTCEEEESCSSCBT-T----C
T ss_pred --CCCceecceEECCCcEEEEEEEcCcccceEEEEEEECCEeccccceEEEEecCCccccceEEEeCCceeec-C----C
Confidence 00112335678999999876 667899999997544321 1111111 1111111111000 0 0
Q ss_pred ceEEEEEEEeCCCCceeceEEEE---cce----------eeeEeCCCceEEEC---cCCCccEEEEEEecc
Q 001065 325 GFSVGGRVVDENDMGVEGVKILV---DGH----------ERSITDRDGYYKLD---QVTSNRYTIEAVKVH 379 (1167)
Q Consensus 325 g~sV~G~V~d~~G~pl~Ga~V~l---~G~----------~~~~TD~dG~y~~~---~L~pG~Y~I~~~~~~ 379 (1167)
...+.-+|.|..|+||+|..|.+ +|. ...+||.+|.|... +-.+|.|+|.+...+
T Consensus 313 ~~~vt~tv~D~~GNpv~g~~V~f~~~~g~~~~~~~~~t~~~~tt~~~G~~~~tlta~t~aG~~~vta~v~g 383 (414)
T 3tkv_A 313 TTELTFTMKDAYGNPVTGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVSTLTLGSAAGQLSVMPRVNG 383 (414)
T ss_dssp EEEEEEECBBTTSCBCCSCCCCCCEEESGGGCSSSCCEECCCEEEETTEEEEEEECCSCCEEEEEECEETT
T ss_pred eEEEEEEEEeCCCCCCCCcEEEEEecccceeeccCCCccceeEECCCCEEEEEEEccceeeEEEEEEEECC
Confidence 13466688899999999999876 231 12489999998874 446799999988765
No 16
>1d2p_A Collagen adhesin, CNA; IGG, IGSF, mscramm, structural protein; 2.50A {Staphylococcus aureus} SCOP: b.3.5.1 b.3.5.1 b.3.5.1 b.3.5.1
Probab=98.12 E-value=0.0015 Score=75.22 Aligned_cols=279 Identities=16% Similarity=0.237 Sum_probs=152.4
Q ss_pred ccceEEEEEeCCCcEEEeE-EecC-CcEEEeCCCCC---c---cEEEEEEcCCCcccCCceEEEEEcCCCcCCcceeeEE
Q 001065 51 YSHVTVELRTLDGLVKEST-QCAP-NGYYFIPVYDK---G---SFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFR 122 (1167)
Q Consensus 51 ~sgv~v~L~~~~G~~~~~t-~t~~-nG~y~~~~l~~---G---~Y~l~~~~P~G~~~~p~~~~v~Vd~~~~s~~~dinf~ 122 (1167)
-+.++|+|+- +|.....- .+++ +-.|.|..|+. | .|.|+..+|+||.. .+++. +|.-.
T Consensus 22 P~~i~v~L~~-~G~~~~~~~l~~~~~W~~~F~~Lpk~~~G~~i~YtV~E~~~~gY~~-------~~~G~------~ItN~ 87 (373)
T 1d2p_A 22 PEKVSVNLLA-NGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKDYTT-------DINGT------TITNK 87 (373)
T ss_dssp CSEEEEEEEE-TTEEEEEEEEEGGGTTEEEEEEEESEETTEECCEEEEECCCTTEEE-------EEETT------EEEEE
T ss_pred CceEEEEEEe-CCcEeeeEEECCCCCceEEEcCCccCCCCCEEEEEEEecCCCCcEE-------eecCc------EEEec
Confidence 3679999984 68665443 3444 34677666555 4 89998899999862 23331 22222
Q ss_pred Ee--CcEEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEE---EEeCCCceEEEccccCc------eEEEEE--E
Q 001065 123 FT--GFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISS---VITSSEGSYLFKNIIPG------KYKLRA--S 189 (1167)
Q Consensus 123 ~~--g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~---ttTd~~G~f~f~~l~pG------~Y~l~~--~ 189 (1167)
.. ...|+.+-.-.+++. ..+..+..++|+|+. +|..+.. ...+.+..|.|.+||.. .|+|.+ .
T Consensus 88 ~~p~~~~i~VtK~W~D~~n---~dg~rP~~I~v~L~~-~G~~~g~~~~l~~~n~W~~tf~~Lp~~~~G~~i~YtV~Ev~~ 163 (373)
T 1d2p_A 88 YTPGETSATVTKNWDDNNN---QDGKRPTEIKVELYQ-DGKATGKTAILNESNNWTHTWTGLDEKAKGQQVKYTVEELTK 163 (373)
T ss_dssp ECTTEEEEEEEEEEESTTT---TTSCCCSEEEEEEEE-TTEEEEEEEEEEGGGTTEEEEEEEESBSSSSBCCEEEEECSC
T ss_pred cCCcceEEEEEEEECCCCc---ccCCCCceEEEEEEE-CCEEcceEEEEecCCceEEEEccCCcccCCCEEEEEEEEecc
Confidence 11 123443333222211 124566789999997 4644432 22356789999999876 899998 3
Q ss_pred cCCceeEeecceEEEEccCCeeEeeeeeccceEEeeE-EEeC-----CCceeceEEEEEECCCCcccCCCCCCCcccccc
Q 001065 190 HPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRGL-VVAQ-----GNPILGVHIYLYSDDVGKVDCPQGSGNALGERK 263 (1167)
Q Consensus 190 ~~g~~~~~~~~~~V~v~~~~~~~~~~l~~~G~~isG~-V~~~-----g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~ 263 (1167)
.+||.....+. ..+...+.+.....-.+|+|. +..+ |.....++|.|+... .
T Consensus 164 ~~GY~~~~~~~-----~~~~~tITNt~~p~~~~i~v~K~W~d~~~~dg~rP~~I~V~L~~~G-----------------~ 221 (373)
T 1d2p_A 164 VKGYTTHVDNN-----DMGNLITTNKYTPETTSSIGEKVWDDKDNQDGKRPEKVSVNLLANG-----------------E 221 (373)
T ss_dssp CTTCEEEEECS-----CTTSEEEEEECCCCEEEEEEEEEEESTTTTTSCCCSCEEEEEEETT-----------------E
T ss_pred CCCcEEEEccc-----ccccEEEEeccccccccccceEEEcCCCcccccCCceEEEEEecCC-----------------e
Confidence 46887653221 011222222211122345554 4432 445578999999852 1
Q ss_pred eee--EEEeCCCCeEEEcccCC---c---cEEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEEeceEEEEEE-Ee
Q 001065 264 ALC--HAVSDADGKFMFKSVPC---G---QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRV-VD 334 (1167)
Q Consensus 264 ~~~--~~~TD~~G~f~f~~Lpp---G---~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V-~d 334 (1167)
... .+..+.+-+|+|.+||. | .|+|.+..- ++ | ..++.+-. +-....+...+|++.- .+
T Consensus 222 ~~~~~~l~~~~~W~~~f~~Lp~y~~G~~i~YtV~E~~v-~g--Y-------~~~~~g~~--ItNt~~p~~~~v~v~K~W~ 289 (373)
T 1d2p_A 222 KVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHV-KD--Y-------TTDINGTT--ITNKYTPGETSATVTKNWD 289 (373)
T ss_dssp EEEEEEECGGGTSEEEEEEEESEETTEECCEEEEECCC-TT--E-------EEEEETTE--EEEEECTTEEEEEEEEEEE
T ss_pred EeeeEEecCCCCcEEEEecCCccCCCcEEEEEEEEecC-CC--c-------EEEEcCeE--EEcccccccceeEEEEEEC
Confidence 122 22234456999999985 4 488887421 11 1 12222211 1111111113344333 32
Q ss_pred C----CCCceeceEEEE--cceeee----Ee-CCCceEEECcCCC---c---cEEEEEE--ecccc
Q 001065 335 E----NDMGVEGVKILV--DGHERS----IT-DRDGYYKLDQVTS---N---RYTIEAV--KVHYK 381 (1167)
Q Consensus 335 ~----~G~pl~Ga~V~l--~G~~~~----~T-D~dG~y~~~~L~p---G---~Y~I~~~--~~~y~ 381 (1167)
. +|..-+.++|.| +|+... .+ +.+..|+|.+|+. | .|+|... .++|.
T Consensus 290 d~~~~~g~rP~si~V~L~~dG~~~~~~~~l~~~n~W~~tf~~L~~~~~G~~i~YtV~E~~~~~GY~ 355 (373)
T 1d2p_A 290 DNNNQDGKRPTEIKVELYQDGKATGKTAILNESNNWTHTWTGLDEKAKGQQVKYTVEELTKVKGYT 355 (373)
T ss_dssp SGGGTTSCCCSEEEEEEEETTEEEEEEEEEETTTTTEEEEEEEESEETTEECCEEEEECSCCTTEE
T ss_pred CCCcccCCCCceEEEEEEeCCcEeeeEEEecCCCceEEEEcCCCccCCCCEEEEEEEEecCCCCcE
Confidence 2 233335678877 887652 22 3445899999986 4 7999875 45664
No 17
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X
Probab=97.90 E-value=1.8e-05 Score=92.56 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=57.3
Q ss_pred cEEEEEEEecc-CC-ccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcC-CceeE
Q 001065 126 FTLLGRVVGAI-GG-ESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHP-NLSVE 196 (1167)
Q Consensus 126 ~~IsG~V~~~~-g~-~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~-g~~~~ 196 (1167)
..|.|+|..+. ++ ..| ..+.|++||+|+|++.+|.++.+++||++|.|.|.+|+||+|+|++..| ||.+.
T Consensus 306 ~~igg~Vw~D~n~nG~~D-~~e~gl~gv~v~L~d~~G~~v~tttTd~~G~Y~F~~L~~G~Y~V~~~~P~Gy~~t 378 (429)
T 3irp_X 306 GGFGGYVWFDKNNDGVQN-DSNAAAAGITVNLLDPTGIRLATTTTDITGHYNFDNLTNGNYLVEFVMPEGYIPT 378 (429)
T ss_dssp EEEEEEEEECTTSSSSSC-CSSCBCTTCEEEEECTTSCEEEEEECCTTSEEEEEEEESEEEEEEECCCTTEEEC
T ss_pred EEEccEEEEeCCCCCCcC-cCCCCcCCeEEEEEcCCCCEEEEEEeCCCCeEEeCCCCCCcEEEEEECCCCCEEc
Confidence 57899997542 11 112 2467999999999999999999999999999999999999999998776 78765
No 18
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A {Streptococcus pyogenes}
Probab=97.88 E-value=3.7e-05 Score=74.31 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=59.8
Q ss_pred EEeeeEEEEEEEccCCCCCcccceEEEEECCccee-eceeecCCceEEEecCCCcceEEeec--cCccccCCCceeEEec
Q 001065 854 CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYR-NNSVSWAGGSFHFDNLFPGNFYLRPL--LKEYAFSPPAQAIELG 930 (1167)
Q Consensus 854 ~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~~r-~n~~T~~~G~~~f~~L~PG~Y~~~~~--~key~~~p~~~~i~v~ 930 (1167)
..+.+.|.+++.|.+ +++|+||.|.|...++-. ...+ .+|.+.|.+|.||+|+|++. +.+|.+. .+..|+|.
T Consensus 24 ~~~~~~v~i~K~D~~--g~~L~GA~F~l~~~~g~~v~~~~--sdG~~~~~~L~~G~Y~l~EtkAP~GY~l~-~~i~ftV~ 98 (121)
T 2x5p_A 24 EDSATHIKFSKRDID--GKELAGATMELRDSSGKTISTWI--SDGQVKDFYLMPGKYTFVETAAPDGYEVA-TAITFTVN 98 (121)
T ss_dssp -CCCEEEEEEEECTT--CCBCCCCEEEEECTTSCEEEEEE--CCSSCEEEEECSEEEEEEEEECCTTCCCC-CCEEEEEC
T ss_pred cCCcEEEEEEEECCC--CCCcCCCEEEEEECCCCEEEEEE--eCCEEEEcccCCcEEEEEEEeCCCCcccC-CCEEEEEc
Confidence 345678889998874 799999999999775421 2233 36999999999999999986 6799997 88999998
Q ss_pred CCcE
Q 001065 931 SGES 934 (1167)
Q Consensus 931 ~G~~ 934 (1167)
+...
T Consensus 99 ~~g~ 102 (121)
T 2x5p_A 99 EQGQ 102 (121)
T ss_dssp TTCC
T ss_pred CCce
Confidence 6443
No 19
>2x5p_A FBA2, fibronectin binding protein; protein binding; 1.60A {Streptococcus pyogenes}
Probab=97.69 E-value=4.9e-05 Score=73.41 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=49.7
Q ss_pred CCcEEEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCC
Q 001065 931 SGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGF 1007 (1167)
Q Consensus 931 ~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~ 1007 (1167)
.||+..+++...+.....+-|++. +|++|+||.|++++.++....+.+| ||++.+.+|.||+||..+++++++|
T Consensus 14 ~g~~g~~ti~~~~~~~v~i~K~D~-~g~~L~GA~F~l~~~~g~~v~~~~s--dG~~~~~~L~~G~Y~l~EtkAP~GY 87 (121)
T 2x5p_A 14 QGQSGDMTIEEDSATHIKFSKRDI-DGKELAGATMELRDSSGKTISTWIS--DGQVKDFYLMPGKYTFVETAAPDGY 87 (121)
T ss_dssp -----------CCCEEEEEEEECT-TCCBCCCCEEEEECTTSCEEEEEEC--CSSCEEEEECSEEEEEEEEECCTTC
T ss_pred CCCceeEEEecCCcEEEEEEEECC-CCCCcCCCEEEEEECCCCEEEEEEe--CCEEEEcccCCcEEEEEEEeCCCCc
Confidence 345445544433333334456665 7899999999999877666666665 5999999999999999999998764
No 20
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Probab=97.67 E-value=0.0001 Score=85.65 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=59.3
Q ss_pred eEEEEEEEeC-CCCceeceEEEEcceee-eEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCCcceeceEEE
Q 001065 326 FSVGGRVVDE-NDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMASIADIKA 402 (1167)
Q Consensus 326 ~sV~G~V~d~-~G~pl~Ga~V~l~G~~~-~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~~i~dI~~ 402 (1167)
..|+|+|+|+ +|+||+||.|.+.|... ++||++|.|.+ .|+||+|+|++++.+|..... .+.+..+.....++.+
T Consensus 301 ~~i~G~V~D~~~g~pi~~A~V~v~~~~~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~~~~~-~v~v~~~~~~~~~~~L 377 (380)
T 1h8l_A 301 RGIWGFVLDATDGRGILNATISVADINHPVTTYKDGDYWR-LLVQGTYKVTASARGYDPVTK-TVEVDSKGGVQVNFTL 377 (380)
T ss_dssp CEEEEEEEETTTCSBCTTCEEEETTEEEEEECCTTSEEEE-CCCSEEEEEEEECTTBCCEEE-EEEECSSCEEECCEEE
T ss_pred ccceEEEEeCCCCCccCceEEEEecCcceeEECCCEEEEE-ecCCCcEEEEEEEcCccceEE-EEEEcCCCeEEEEEEe
Confidence 5799999997 89999999999976544 69999999998 699999999999999865543 4566555433334443
No 21
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}
Probab=97.64 E-value=6.8e-05 Score=88.63 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=59.7
Q ss_pred eEEEEEEEeCCCCceeceEEEEcce--eeeEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCCcc--eeceEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGH--ERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMA--SIADIK 401 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~--~~~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~--~i~dI~ 401 (1167)
..|+|+|+|.+|+||+||.|.+.|. ..++||++|.|.+ .|+||+|+|++++.+|.....+.+.+..+.. ...|+.
T Consensus 337 ~gv~G~V~D~~G~pi~gA~V~v~g~~~~~~~Td~~G~y~~-~l~pG~Y~l~vs~~Gy~~~~~~~v~v~~~~~~~~~~~~~ 415 (435)
T 3mn8_A 337 IGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWR-LLTPGLYSVHASAFGYQTSAPQQVRVTNDNQEALRLDFK 415 (435)
T ss_dssp SSEEEEEECSSSCBCTTCEEEETTCTTSCEECCTTCEEEE-CCCSEEEEEEEEBTTBCCCCCEEEEECCCSSSCEECCEE
T ss_pred ceeEEEEECCCCCccCceEEEEecccccceEeCCCCeEEE-ecCCCcEEEEEEEcccccceEEEEEEecCCcceeEEEEE
Confidence 3599999999999999999999874 4468999999988 5999999999999998333333567766432 234555
Q ss_pred EE
Q 001065 402 AI 403 (1167)
Q Consensus 402 ~~ 403 (1167)
+.
T Consensus 416 L~ 417 (435)
T 3mn8_A 416 LA 417 (435)
T ss_dssp CC
T ss_pred Ee
Confidence 43
No 22
>1d2p_A Collagen adhesin, CNA; IGG, IGSF, mscramm, structural protein; 2.50A {Staphylococcus aureus} SCOP: b.3.5.1 b.3.5.1 b.3.5.1 b.3.5.1
Probab=97.53 E-value=0.097 Score=60.13 Aligned_cols=280 Identities=16% Similarity=0.244 Sum_probs=145.4
Q ss_pred CCCCcceEEEEEeCCCcEEEEEE-e-CCCceEEEccccC---c---eEEEEEEc-CCceeEeecceEEEEccCCeeEeee
Q 001065 145 GGGPSNVNVELLSHSGDLISSVI-T-SSEGSYLFKNIIP---G---KYKLRASH-PNLSVEVRGSTEVELGFENGEVDDI 215 (1167)
Q Consensus 145 ~~plaGv~V~L~~~~g~~i~~tt-T-d~~G~f~f~~l~p---G---~Y~l~~~~-~g~~~~~~~~~~V~v~~~~~~~~~~ 215 (1167)
+..++-++|.|+.. |..+.+.+ + +.+-.|+|.+||- | .|+|.+.. +||.....+. .+.+.
T Consensus 19 g~rP~~i~v~L~~~-G~~~~~~~l~~~~~W~~~F~~Lpk~~~G~~i~YtV~E~~~~gY~~~~~G~----------~ItN~ 87 (373)
T 1d2p_A 19 GKRPEKVSVNLLAN-GEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKDYTTDINGT----------TITNK 87 (373)
T ss_dssp CCCCSEEEEEEEET-TEEEEEEEEEGGGTTEEEEEEEESEETTEECCEEEEECCCTTEEEEEETT----------EEEEE
T ss_pred CCCCceEEEEEEeC-CcEeeeEEECCCCCceEEEcCCccCCCCCEEEEEEEecCCCCcEEeecCc----------EEEec
Confidence 56678899999874 65444332 3 3356899999987 4 89999854 4676543221 12222
Q ss_pred eeccceEEeeE-EEeC-----CCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCc-----
Q 001065 216 FFAPGYEIRGL-VVAQ-----GNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCG----- 284 (1167)
Q Consensus 216 l~~~G~~isG~-V~~~-----g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG----- 284 (1167)
......+|.++ +..+ |.....++|.|+.... .. +. ...+..+.+..|.|.+||..
T Consensus 88 ~~p~~~~i~VtK~W~D~~n~dg~rP~~I~v~L~~~G~-~~------------g~-~~~l~~~n~W~~tf~~Lp~~~~G~~ 153 (373)
T 1d2p_A 88 YTPGETSATVTKNWDDNNNQDGKRPTEIKVELYQDGK-AT------------GK-TAILNESNNWTHTWTGLDEKAKGQQ 153 (373)
T ss_dssp ECTTEEEEEEEEEEESTTTTTSCCCSEEEEEEEETTE-EE------------EE-EEEEEGGGTTEEEEEEEESBSSSSB
T ss_pred cCCcceEEEEEEEECCCCcccCCCCceEEEEEEECCE-Ec------------ce-EEEEecCCceEEEEccCCcccCCCE
Confidence 21122344443 4443 3233679999998521 00 00 12233456789999999976
Q ss_pred -cEEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeEEeceEEEEEEE-eC----CCCceeceEEEE--cceeee---
Q 001065 285 -QYELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQVTGFSVGGRVV-DE----NDMGVEGVKILV--DGHERS--- 353 (1167)
Q Consensus 285 -~Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~~~g~sV~G~V~-d~----~G~pl~Ga~V~l--~G~~~~--- 353 (1167)
.|+|.+....+++.-.+.-.. .+...+.....+.-.+|.|.-. +. +|..-+.++|.| +|+.+.
T Consensus 154 i~YtV~Ev~~~~GY~~~~~~~~------~~~~tITNt~~p~~~~i~v~K~W~d~~~~dg~rP~~I~V~L~~~G~~~~~~~ 227 (373)
T 1d2p_A 154 VKYTVEELTKVKGYTTHVDNND------MGNLITTNKYTPETTSSIGEKVWDDKDNQDGKRPEKVSVNLLANGEKVKTLD 227 (373)
T ss_dssp CCEEEEECSCCTTCEEEEECSC------TTSEEEEEECCCCEEEEEEEEEEESTTTTTSCCCSCEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeccCCCcEEEEcccc------cccEEEEeccccccccccceEEEcCCCcccccCCceEEEEEecCCeEeeeEE
Confidence 799988322222211111100 0111111111111234555443 22 255566788887 887652
Q ss_pred EeCC-CceEEECcCCC---c---cEEEEEEe-ccccccceeeEEEcCCcceeceE-EEEeeEEEEEEEEcC-----Cc--
Q 001065 354 ITDR-DGYYKLDQVTS---N---RYTIEAVK-VHYKFNKLKEYMVLPNMASIADI-KAISYDICGVVRTVG-----SG-- 417 (1167)
Q Consensus 354 ~TD~-dG~y~~~~L~p---G---~Y~I~~~~-~~y~~~~~~~v~v~p~~~~i~dI-~~~~~~V~G~V~~~~-----~~-- 417 (1167)
.+.+ +-+|+|.+|+- | .|+|.... ++|...-. +. .|.+- .....+|++.-...+ +.
T Consensus 228 l~~~~~W~~~f~~Lp~y~~G~~i~YtV~E~~v~gY~~~~~-g~-------~ItNt~~p~~~~v~v~K~W~d~~~~~g~rP 299 (373)
T 1d2p_A 228 VTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKDYTTDIN-GT-------TITNKYTPGETSATVTKNWDDNNNQDGKRP 299 (373)
T ss_dssp ECGGGTSEEEEEEEESEETTEECCEEEEECCCTTEEEEEE-TT-------EEEEEECTTEEEEEEEEEEESGGGTTSCCC
T ss_pred ecCCCCcEEEEecCCccCCCcEEEEEEEEecCCCcEEEEc-Ce-------EEEcccccccceeEEEEEECCCCcccCCCC
Confidence 3333 45899999974 4 48887643 56532211 11 11110 001224555444332 12
Q ss_pred ccEEEEEEcCCCccc--ceeeeecCCeEEEEE-EcCe------eEEEEEEeecCCCCCCe
Q 001065 418 NKVKVALTHGPDKVK--PQVKQTDNNGNFCFE-VPPG------EYRLSAMAATPESSSGI 468 (1167)
Q Consensus 418 ~~a~VtL~~~~~~~~--~~~~~Td~~G~f~f~-L~pG------~Y~v~~~~~~~~~~~G~ 468 (1167)
....|.|.. ++... ......+.+.+|.|. |+.. .|+|++.. .++||
T Consensus 300 ~si~V~L~~-dG~~~~~~~~l~~~n~W~~tf~~L~~~~~G~~i~YtV~E~~----~~~GY 354 (373)
T 1d2p_A 300 TEIKVELYQ-DGKATGKTAILNESNNWTHTWTGLDEKAKGQQVKYTVEELT----KVKGY 354 (373)
T ss_dssp SEEEEEEEE-TTEEEEEEEEEETTTTTEEEEEEEESEETTEECCEEEEECS----CCTTE
T ss_pred ceEEEEEEe-CCcEeeeEEEecCCCceEEEEcCCCccCCCCEEEEEEEEec----CCCCc
Confidence 246666642 22211 111223455689999 8874 89999874 24675
No 23
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=97.51 E-value=0.00015 Score=92.49 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=67.3
Q ss_pred EEeeeEEEEEEEccCCCCCcccceEEEEECCcc-e-eeceeecCCceEEEecCCCcceEEeec--cCccccCCCceeEEe
Q 001065 854 CQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDG-Y-RNNSVSWAGGSFHFDNLFPGNFYLRPL--LKEYAFSPPAQAIEL 929 (1167)
Q Consensus 854 ~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~-~-r~n~~T~~~G~~~f~~L~PG~Y~~~~~--~key~~~p~~~~i~v 929 (1167)
....|.|.|+++|++ ++||+||.|.|...++ . -...+||++|.+.|.+|.||+|+|++. ..+|.++..+..|+|
T Consensus 44 ~~~~G~~~i~K~d~~--~~~L~GA~F~l~~~~~~~~~~~~tTd~~G~~~~~~L~~G~Y~l~Et~AP~GY~l~~~~~~v~v 121 (893)
T 2ww8_A 44 SPAIGKVVIKETGEG--GALLGDAVFELKNNTDGTTVSQRTEAQTGEAIFSNIKPGTYTLTEAQPPVGYKPSTKQWTVEV 121 (893)
T ss_dssp --CCEEEEEEEECST--TCBCCCCEEEEEETTTCCEEEEECCTTTCEEEEEEECSEEEEEEEEECCTTBCCCCCEEEEEE
T ss_pred CcceEEEEEEEECCC--CCccCCCEEEEEECCCCeEEEEEEECCCCeEEECCCCCCcEEEEEccCCCceecCCccEEEEE
Confidence 345788889999864 7999999999988753 2 335789999999999999999999987 579999999999999
Q ss_pred cCCcEEE
Q 001065 930 GSGESRE 936 (1167)
Q Consensus 930 ~~G~~~~ 936 (1167)
.+...+.
T Consensus 122 ~~~g~~~ 128 (893)
T 2ww8_A 122 EKNGRTT 128 (893)
T ss_dssp CTTCCEE
T ss_pred CCCceEE
Confidence 9765544
No 24
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}
Probab=97.47 E-value=0.00022 Score=84.49 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=54.0
Q ss_pred eEEEEEEEeCCCCceeceEEEEcceee-eEeCCCceEEECcCCCccEEEEEEeccccccceeeEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMV 390 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~~-~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v 390 (1167)
..|+|+|+|.+|+||+||.|.+.|... ++||.+|.|.+ .|+||+|+|++++.+|..... .+.+
T Consensus 321 ~~i~G~V~D~~g~pi~gA~V~v~~~~~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~~~~~-~v~v 384 (439)
T 2nsm_A 321 QGIKGMVLDQNYNNLANAVISVSGINHDVTSGDHGDYFR-LLLPGIYTVSATAPGYDPETV-TVTV 384 (439)
T ss_dssp CSEEEEEECTTSCBCTTCEEEETTEEEEEECCTTSEEEE-CCCSEEEEEEEECTTEECEEE-EEEE
T ss_pred cceEEEEEcCCCCCccceEEEEEcccceeEECCCCeEEE-ccCCeeEEEEEEecCceeEEE-EEEE
Confidence 469999999999999999999977554 68999999988 699999999999999865544 4555
No 25
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=97.45 E-value=0.052 Score=73.00 Aligned_cols=264 Identities=17% Similarity=0.199 Sum_probs=140.4
Q ss_pred EEeCC-CCCccEEEEEEcCCCcccCCceEEEEEcCCCcCCcceeeEEE-------eCcEEEEEEEeccCCccccCCCCCC
Q 001065 77 YFIPV-YDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRF-------TGFTLLGRVVGAIGGESCLDKGGGP 148 (1167)
Q Consensus 77 y~~~~-l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~~~~s~~~dinf~~-------~g~~IsG~V~~~~g~~s~~~~~~pl 148 (1167)
|.+|. +..|.|.|.+....|..|. .+..|.+... ... .|.. +|-+|.=++...+. +..|+
T Consensus 64 ~~vp~~~~~~~~~l~~~~~~~~~f~-~~~~v~~~~~----~~~-~fi~TDr~iYrPGqtV~~r~~~~~~------~~~p~ 131 (1325)
T 2pn5_A 64 FNMPEDLTAGNYKITIDGQRGFSFH-KEAELVYLSK----SIS-GLIQVDKPVFKPGDTVNFRVIVLDT------ELKPP 131 (1325)
T ss_dssp EECCSCCCSCCEEEEEEEESSCCCE-EEEEEEECSC----SEE-EEEEESCSEECTTCEEEEEEEEEET------TSSCC
T ss_pred EEcCCCcCCCcEEEEEEecCCccEE-EEEEEEEEcc----ccc-EEEecCCCccCCCCEEEEEEEEecC------Ccccc
Confidence 34543 4578999988775556664 3344555432 111 1221 33344444432211 23555
Q ss_pred cc---eEEEEEeCCCcEEEEE--EeCCCceEEEc-----cccCceEEEEEEcCCce-----eEe----ecceEEEEccCC
Q 001065 149 SN---VNVELLSHSGDLISSV--ITSSEGSYLFK-----NIIPGKYKLRASHPNLS-----VEV----RGSTEVELGFEN 209 (1167)
Q Consensus 149 aG---v~V~L~~~~g~~i~~t--tTd~~G~f~f~-----~l~pG~Y~l~~~~~g~~-----~~~----~~~~~V~v~~~~ 209 (1167)
.. ++|+|.+.+|..+... .++..|.|.++ +.+.|.|+|++...+-. +.+ .|+.+|++....
T Consensus 132 ~~~~~v~v~l~dp~g~~i~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~I~~~~~~~~~~~~~F~VeeYvlP~feV~i~~~~ 211 (1325)
T 2pn5_A 132 ARVKSVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISVEVEGEELVSKTFEVKEYVLSTFDVQVMPSV 211 (1325)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEEETTEEEEEEEEEECCSCCCCEEEEEEESS
T ss_pred ccCccEEEEEECCCCCEEEEEecccCCCCeEecceECCCCccccceEEEEEeCCCcEEEEEEEEEeccCceEEEEEecCc
Confidence 53 7899999999766543 56788887653 34569999999764311 211 233445443322
Q ss_pred eeEeeeeeccceEEeeEEEe---CCCceec-eEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEc----cc
Q 001065 210 GEVDDIFFAPGYEIRGLVVA---QGNPILG-VHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFK----SV 281 (1167)
Q Consensus 210 ~~~~~~l~~~G~~isG~V~~---~g~Pl~G-a~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~----~L 281 (1167)
.....+-.+..+|.. .|.|++| |.|.+...+.. .....++|.+|.+.+. .+
T Consensus 212 -----~~~~~~~~~~v~v~a~Y~~G~Pv~G~~~v~v~~~~~~----------------~~~~~~~d~~G~~~~~~~~~~~ 270 (1325)
T 2pn5_A 212 -----IPLEEHQAVNLTIEANYHFGKPVQGVAKVELYLDDDK----------------LKLKKELTVYGKGQVELRFDNF 270 (1325)
T ss_dssp -----CCBGGGCEEEEEEEEEESSSCBCEEEEEEEEEETTTT----------------EEEEEEEEEESEEEEEEECSSC
T ss_pred -----eEEecCCeEEEEEEEEEcCCCeeeeEEEEEEEECCCC----------------cceeEEEecCcEEEEEEehhHh
Confidence 122344455555654 4999999 88887764210 1135667888888763 21
Q ss_pred C--Cc--cEEEEEEEecC--CeE------EEecCceEEEEEeccceeeeeeeEEec--eEEEEEEEeCCCCceeceE--E
Q 001065 282 P--CG--QYELVPHYKGE--NTV------FDVSPSLVSMSVRHQHVTVPEKFQVTG--FSVGGRVVDENDMGVEGVK--I 345 (1167)
Q Consensus 282 p--pG--~Y~v~~~~~~~--~~~------~~~~P~~~~vtV~~~~~~l~~~f~~~g--~sV~G~V~d~~G~pl~Ga~--V 345 (1167)
. +. .|.|.+....+ +.. +.+.+....+.+.... .+...| +.+.-.+.+.+|+|+++.. |
T Consensus 271 ~~~~~~~~~~v~a~V~e~~tg~~~~~~~~i~i~~~~~~i~~~~~~-----~~~~~g~~~~~~v~~~~~dG~p~~~~~~~v 345 (1325)
T 2pn5_A 271 AMDADQQDVPVKVSFVEQYTNRTVVKQSQITVYRYAYRVELIKES-----PQFRPGLPFKCALQFTHHDGTPAKGISGKV 345 (1325)
T ss_dssp CCSSSEEEEEEEEEEEETTTCCEEEEEEEEEEESSSCEEEEEESS-----SSBCTTSCEEEEEEEECTTSCBCTTCEEEE
T ss_pred ccccccceEEEEEEEEECCCcEEEEeeEEEEEEEeeEEEEEEeCC-----CcccCCCCEEEEEEEECCCCCcCCCCceeE
Confidence 1 11 34444432211 111 1122332222222110 011122 3455567889999999965 5
Q ss_pred EE---cceeeeEeCCCceEEEC-cC-CCccEE-EEEEec
Q 001065 346 LV---DGHERSITDRDGYYKLD-QV-TSNRYT-IEAVKV 378 (1167)
Q Consensus 346 ~l---~G~~~~~TD~dG~y~~~-~L-~pG~Y~-I~~~~~ 378 (1167)
.+ +.....+||++|...|. ++ ..|.|. |+++..
T Consensus 346 ~~~~~~~~~~~~t~~~G~~~~~~~~~~~g~y~~l~v~~~ 384 (1325)
T 2pn5_A 346 EVSDVRFETTTTSDNDGLIKLELQPSEGTEQLSIHFNAV 384 (1325)
T ss_dssp EEGGGTEEEEEECCTTSEEEEEECCCTTCCEEEEEEECT
T ss_pred EEEEecceEEEEeCCCCcEEEEEECCCCCeEEEEEEEEc
Confidence 44 22334689999975553 22 357886 877643
No 26
>3qdh_A Fimbrial structural subunit; isopeptide bonds, actinomyces type 2 fimbriae, CNAA/DEV-IGG CNAB/IGG-REV fold, cell ahdesion, pilin; 1.90A {Actinomyces naeslundii}
Probab=97.28 E-value=0.00028 Score=78.77 Aligned_cols=83 Identities=10% Similarity=0.169 Sum_probs=58.6
Q ss_pred EeeeEEEEEEEccCC---CCCcccceEEEEECCcc-e------------e-----eceeecCCceEEEecC---------
Q 001065 855 QKLSQISVRIYSKDD---AGEPIPSVLLSLSGDDG-Y------------R-----NNSVSWAGGSFHFDNL--------- 904 (1167)
Q Consensus 855 ~~l~~i~~~v~~~~~---~~~pl~gvllslsg~~~-~------------r-----~n~~T~~~G~~~f~~L--------- 904 (1167)
...|+|.|+++|+++ .+++|+||.|.|-..++ | . ..++||++|.+.|.+|
T Consensus 156 ~~~g~i~i~KvD~~~~~~~~~~L~GA~F~L~~~~~~~~~~~~~~~~g~~i~~~~~~~~tTd~~G~~~~~gL~~~d~~~~~ 235 (290)
T 3qdh_A 156 SRWGDLLIKKVDNHQQGQDKAGLQGAQFQLYKAKNAYAGTCTKDKEGDPIAINGETTLTTDAQGAINVKGLFISDSIDGA 235 (290)
T ss_dssp EEEEEEEEEEC----------CCTTCEEEEEEESSTTCSSCCSCEESSCCCBTTBSSEECCTTSEEEEEEEEEEESCCCT
T ss_pred EEEeeEEEEEECCCCCcccCcccCCCEEEEEECCCcccceeeccccCceEecCCceEEEECCCCEEEEeCcccccccccc
Confidence 457899999998853 25899999999976532 1 1 2578999999999999
Q ss_pred --------CCcceEEeec--cCccccCCC---ceeEEecCCcEEEE
Q 001065 905 --------FPGNFYLRPL--LKEYAFSPP---AQAIELGSGESREV 937 (1167)
Q Consensus 905 --------~PG~Y~~~~~--~key~~~p~---~~~i~v~~G~~~~v 937 (1167)
.+|+|+|+++ ..+|.+... ...|+|+.|++..+
T Consensus 236 ~~~~~~~~~~~~Y~l~EtkAP~GY~l~~~~~~~~~~~v~~~~~~~~ 281 (290)
T 3qdh_A 236 NRDNQKDATARCYVLVETKAPAGYVLPAGDGAVTPVKIEVGAVTTD 281 (290)
T ss_dssp TSSCCTTCSEEEEEEEEEECCTTBCCCCGGGGEEEEEEEC------
T ss_pred cccccccCCCceEEEEEccCCCCeEcCcCcCCceeEEEECCCCccE
Confidence 6899999987 679999987 77888888866543
No 27
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1
Probab=97.26 E-value=0.00038 Score=82.07 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=54.5
Q ss_pred eEEEEEEEeCCCCceeceEEEEccee-e--eEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCC
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHE-R--SITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPN 393 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~-~--~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~ 393 (1167)
..|+|+|.|.+|+||+||.|.+.|.. . ++||.+|.|.+ .|+||+|+|++++.+|..... .+.+..+
T Consensus 296 ~~I~G~V~D~~g~pi~gA~V~v~g~~~~~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~~~~~-~v~v~~~ 364 (426)
T 1uwy_A 296 LGVKGQVFDQNGNPLPNVIVEVQDRKHICPYRTNKYGEYYL-LLLPGSYIINVTVPGHDPHIT-KVIIPEK 364 (426)
T ss_dssp CSEEEEEECTTSCBCCSCEEEETTCCCSSCCBCCTTCEEEE-CCCSEEEEEEEECSSSCCEEE-EEEECSS
T ss_pred ceeEEEEECCCCCccCceEEEEEeccccceeEeCCCCEEEe-ccCCeeEEEEEEEcCcccEEE-EEEEeCC
Confidence 46999999999999999999996543 3 68999999999 699999999999999865443 3555544
No 28
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=97.19 E-value=0.011 Score=73.41 Aligned_cols=210 Identities=17% Similarity=0.172 Sum_probs=113.9
Q ss_pred eEEEEEeCCCcEEEE--EEeC-CCceEEEc-----cccCceEEEEEEcCC---c----eeEe----ecceEEEEccCCee
Q 001065 151 VNVELLSHSGDLISS--VITS-SEGSYLFK-----NIIPGKYKLRASHPN---L----SVEV----RGSTEVELGFENGE 211 (1167)
Q Consensus 151 v~V~L~~~~g~~i~~--ttTd-~~G~f~f~-----~l~pG~Y~l~~~~~g---~----~~~~----~~~~~V~v~~~~~~ 211 (1167)
++|+|.+.+|..+.. ..+| ..|.|.++ +.+.|.|+|++...+ . .+.+ .++.+|++.....
T Consensus 141 v~v~l~dP~g~~i~~~~~~~~~~~G~~~~~f~Lp~~~~~G~w~I~v~~~~~~~~~~~~~F~VeeYvlP~feV~i~~~~~- 219 (645)
T 2hr0_A 141 VMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEPTEK- 219 (645)
T ss_dssp EEEEEECTTSCEEEEEEEECTTTTTEEEEEEECCSSCCCSEEEEEEEETTCTTSEEEEEEECCCSCCCCCEEEEEESSS-
T ss_pred EEEEEECCCCCEEEEEEeeccccCCeEEEEEECCCccccccEEEEEEECCCCCceEEEEEEEeeccCCeEEEEEEcCce-
Confidence 788899999966553 3455 78977663 346699999997532 1 1221 2344555543221
Q ss_pred Eeeeeeccc--eEEeeEEEe---CCCceec-eEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcc-----
Q 001065 212 VDDIFFAPG--YEIRGLVVA---QGNPILG-VHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKS----- 280 (1167)
Q Consensus 212 ~~~~l~~~G--~~isG~V~~---~g~Pl~G-a~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~----- 280 (1167)
....+ -.+..+|.. .|+|++| |.|...........+ .+ ........+|.+|.|.|.-
T Consensus 220 ----~~~~~~~~~~~v~v~a~Y~~G~Pv~G~a~v~~~~~~~~~~~~------~~--~~~~~~~~~dg~g~~~l~~~~~~~ 287 (645)
T 2hr0_A 220 ----FYYIYNEKGLEVTITARFLYGKKVEGTAFVIFGIQDGEQRIS------LP--ESLKRIPIEDGSGEVVLSRKVLLD 287 (645)
T ss_dssp ----SEETTCTTCEEEEEEEECTTSCBCCEEEEEEEEEEETTEEEE------CG--GGCEEEEEBTTEEEEEECHHHHHT
T ss_pred ----eEecCCCcEEEEEEEEEEcCCCeeeeEEEEEEEEeeCCeeee------cC--chheeEEeeCCeEEEEEeHHHhhh
Confidence 12233 345555554 4999999 766543211000000 00 0112356789999999751
Q ss_pred -c--C------CccEEEEEEE-e--cCCeE------EEecCceEEEEEeccceeeeeeeEEec--eEEEEEEEeCCCCce
Q 001065 281 -V--P------CGQYELVPHY-K--GENTV------FDVSPSLVSMSVRHQHVTVPEKFQVTG--FSVGGRVVDENDMGV 340 (1167)
Q Consensus 281 -L--p------pG~Y~v~~~~-~--~~~~~------~~~~P~~~~vtV~~~~~~l~~~f~~~g--~sV~G~V~d~~G~pl 340 (1167)
. + +..+.|.+.- . +.... +.+.+....+.+.... .+-..| +.+.-.+.+.+|+|+
T Consensus 288 ~~~~~~~~~~~~~~~~v~a~V~e~~g~~~~~~~~~~i~i~~~~~~i~~~~~~-----~~~~~g~~~~~~v~~~~~dG~p~ 362 (645)
T 2hr0_A 288 GVQNLRAEDLVGKSLYVSATVILHSGSDMVQAERSGIPIVTSPYQIHFTKTP-----KYFKPGMPFDLMVFVTNPDGSPA 362 (645)
T ss_dssp SCSSCSGGGGTTCEEEEEEEEEESSSSCEEEEEEEEEEEESCSCEEECSSSC-----SBCCTTSEEEEEEEEECSSSSBC
T ss_pred hhcccccccccCcEEEEEEEEEECCCCeEEEeeeeeEEEEEeeEEEEEEeCc-----cccCCCCcEEEEEEEEcCCCCcc
Confidence 1 1 2246555542 2 21111 1233333333332111 111123 334445678899999
Q ss_pred eceEEEE-cc-eeeeEeCCCc--eEEECcCCC--ccEEEEEEecc
Q 001065 341 EGVKILV-DG-HERSITDRDG--YYKLDQVTS--NRYTIEAVKVH 379 (1167)
Q Consensus 341 ~Ga~V~l-~G-~~~~~TD~dG--~y~~~~L~p--G~Y~I~~~~~~ 379 (1167)
+|+.|.+ .| ....+||++| .|.| +++. |.|.|+++...
T Consensus 363 ~~~~v~l~~~~~~~~~t~~~G~~~~~i-~~~~~~g~y~l~v~~~~ 406 (645)
T 2hr0_A 363 YRVPVAVQGEDTVQSLTQGDGVAKLSI-NTHPSQKPLSITVRTKK 406 (645)
T ss_dssp SCCCEEESSSCCSCCCCCTTSEEEEEE-ECCSCSSCEEEEEEECC
T ss_pred CCEEEEEecCcceeeEECCCCcEEEEE-ECCCCCeEEEEEEEEcC
Confidence 9999998 44 3335899999 4655 3444 88999987643
No 29
>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X*
Probab=97.17 E-value=0.00078 Score=79.32 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=66.9
Q ss_pred eeeEEEEEEEccCCCCCcccceEEEEECCcc-e-------------eeceeecCCceEEEecC-----------------
Q 001065 856 KLSQISVRIYSKDDAGEPIPSVLLSLSGDDG-Y-------------RNNSVSWAGGSFHFDNL----------------- 904 (1167)
Q Consensus 856 ~l~~i~~~v~~~~~~~~pl~gvllslsg~~~-~-------------r~n~~T~~~G~~~f~~L----------------- 904 (1167)
..|+|.|+++|+++.+.+|+||.|.|-..++ + ...++||++|.+.|.+|
T Consensus 305 ~tG~i~i~Kvd~~d~~~~L~GA~F~L~~~~~~~~~~~~~~~~~~~~~~~~tTd~~G~~~~~gL~~~~~~~~~~~~~~~~~ 384 (436)
T 3hr6_A 305 KFGQITIEKSFDGNTPGADRTATFQLHRCEADGSLVKSDPPISLDGKQEFVTGQDGKAVLSGIHLGTLQLESNVMKYTDA 384 (436)
T ss_dssp EEEEEEEEEEETTBCCCTTCCCEEEEEEECTTSCBCTTCCCCCBTTBCCEECCTTSEEEEEEEEEEEEEEETTEEEEEET
T ss_pred EEeeEEEEEeCCCCCCcccCCCEEEEEECCCCccccccCCceeeccceEEEeCCCcEEEEeCcccccccccccccccccc
Confidence 5789999999886567999999999975432 1 12578999999999999
Q ss_pred ---CCcceEEeec--cCccccCCCceeEEecCCcEE
Q 001065 905 ---FPGNFYLRPL--LKEYAFSPPAQAIELGSGESR 935 (1167)
Q Consensus 905 ---~PG~Y~~~~~--~key~~~p~~~~i~v~~G~~~ 935 (1167)
.+|+|+|+++ ..+|.+.+.++.|+|.+++..
T Consensus 385 ~~~~~g~Y~lvETkAP~GY~l~~~pi~fti~~~~~~ 420 (436)
T 3hr6_A 385 WAGKGTEFCLVETATASGYELLPKPVIVKLEANEST 420 (436)
T ss_dssp TTTSCSEEEEEEEECCTTCBCCSSCEEECCCCCTTC
T ss_pred ccCCCCeEEEEEecCCCCcCcCCCcEEEEEecCCcc
Confidence 5899999987 579999999999999998763
No 30
>3pf2_A Cell WALL surface anchor family protein; pilus shaft component, IGG-DEV fold, IGG-REV fold, CNA A TYP type, IG-like fold; 1.70A {Streptococcus agalactiae serogroup V} PDB: 3pg2_A
Probab=97.01 E-value=0.0014 Score=73.95 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=63.7
Q ss_pred eeEEEEEEEccCCCCCcccceEEEEECCcc--ee------------------------eceeecCCceEEEecCC-----
Q 001065 857 LSQISVRIYSKDDAGEPIPSVLLSLSGDDG--YR------------------------NNSVSWAGGSFHFDNLF----- 905 (1167)
Q Consensus 857 l~~i~~~v~~~~~~~~pl~gvllslsg~~~--~r------------------------~n~~T~~~G~~~f~~L~----- 905 (1167)
.|++.++++|.+ ++.+|+||.|.|-..++ ++ ..++||++|.+.|.+|.
T Consensus 181 tg~~~i~KvD~~-~~~~L~GA~F~L~~~~g~~~~~~~~~~k~~~~~~~~~~~~~~g~~~~~tt~~~G~~~~~gL~~~~~~ 259 (319)
T 3pf2_A 181 TGGKRFVKKDST-ETQTLGGAEFDLLASDGTAVKWTDALIKANTNKNYIAGEAVTGQPIKLKSHTDGTFEIKGLAYAVDA 259 (319)
T ss_dssp CEEEEEEEEETT-SCSBCCCCEEEEEETTSCBCBCCHHHHHHCCCGGGBSSCCCTTSBCEEECCTTSEEEEEEECCSTTS
T ss_pred EeeEEEEEeCCC-CCcccCCCEEEEEeCCCCEEeeeeeccccccccceeccccccCceeEEEECCCCEEEEccccccccc
Confidence 488899888874 37999999999976543 21 14689999999999999
Q ss_pred --Cc---ceEEeec--cCccccCCCceeEEecCCcE
Q 001065 906 --PG---NFYLRPL--LKEYAFSPPAQAIELGSGES 934 (1167)
Q Consensus 906 --PG---~Y~~~~~--~key~~~p~~~~i~v~~G~~ 934 (1167)
|| +|+|+++ ..+|.+.+.++.|+|.++..
T Consensus 260 ~~~G~~~~Y~l~EtkAP~GY~l~~~~~~f~v~~~~~ 295 (319)
T 3pf2_A 260 NAEGTAVTYKLKETKAPEGYVIPDKEIEFTVSQTSY 295 (319)
T ss_dssp CTTCCCEEEEEEEEECCTTBCCCSSCEEEEECTTSS
T ss_pred cCCCCcceEEEEEeeCCCCcccCCCcEEEEEecCCc
Confidence 68 9999987 67999999999999987753
No 31
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Probab=97.00 E-value=0.00095 Score=77.55 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=69.6
Q ss_pred eEEEeeeEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCceeEEecC
Q 001065 852 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS 931 (1167)
Q Consensus 852 f~~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~ 931 (1167)
|-.+-.+.|..+|.|. .+|+||+||.+.|.+.. ...+||++|.|.+ .|.||+|.|+....+|+ +..+.|+|.+
T Consensus 295 ~~~~v~~~i~G~V~D~-~~g~pi~~A~V~v~~~~---~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~--~~~~~v~v~~ 367 (380)
T 1h8l_A 295 FIKQVHRGIWGFVLDA-TDGRGILNATISVADIN---HPVTTYKDGDYWR-LLVQGTYKVTASARGYD--PVTKTVEVDS 367 (380)
T ss_dssp HHHGGGCEEEEEEEET-TTCSBCTTCEEEETTEE---EEEECCTTSEEEE-CCCSEEEEEEEECTTBC--CEEEEEEECS
T ss_pred hhhhccccceEEEEeC-CCCCccCceEEEEecCc---ceeEECCCEEEEE-ecCCCcEEEEEEEcCcc--ceEEEEEEcC
Confidence 4344568899999986 34899999999999863 4579999999988 69999999999999997 5567899999
Q ss_pred CcEEEEEEEEE
Q 001065 932 GESREVIFQAT 942 (1167)
Q Consensus 932 G~~~~v~~~~~ 942 (1167)
+++..+.|...
T Consensus 368 ~~~~~~~~~L~ 378 (380)
T 1h8l_A 368 KGGVQVNFTLS 378 (380)
T ss_dssp SCEEECCEEEC
T ss_pred CCeEEEEEEec
Confidence 99887777654
No 32
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens}
Probab=96.83 E-value=0.0019 Score=76.54 Aligned_cols=64 Identities=20% Similarity=0.344 Sum_probs=52.2
Q ss_pred cEEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeEeecceEEEE
Q 001065 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVEL 205 (1167)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~V~v 205 (1167)
..|+|+|++. ++.|++||+|.+.+. -..++||++|.|.+ .|+||+|+|.+++.||.... ..|.+
T Consensus 321 ~~i~G~V~D~--------~g~pi~gA~V~v~~~----~~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~~~~---~~v~v 384 (439)
T 2nsm_A 321 QGIKGMVLDQ--------NYNNLANAVISVSGI----NHDVTSGDHGDYFR-LLLPGIYTVSATAPGYDPET---VTVTV 384 (439)
T ss_dssp CSEEEEEECT--------TSCBCTTCEEEETTE----EEEEECCTTSEEEE-CCCSEEEEEEEECTTEECEE---EEEEE
T ss_pred cceEEEEEcC--------CCCCccceEEEEEcc----cceeEECCCCeEEE-ccCCeeEEEEEEecCceeEE---EEEEE
Confidence 4699999875 369999999998532 35689999999987 59999999999999998652 35666
No 33
>3uxf_A Fimbrial subunit type 1; adhesin, isopeptide, GRAM-positive, beta sandwich, surface, cell adhesion; 1.60A {Actinomyces oris}
Probab=96.83 E-value=0.0011 Score=79.14 Aligned_cols=79 Identities=10% Similarity=0.123 Sum_probs=65.4
Q ss_pred eeeEEEEEEEccCC--CCCcccceEEEEECCcc------ee-----------------eceeecCCceEEEecCC-----
Q 001065 856 KLSQISVRIYSKDD--AGEPIPSVLLSLSGDDG------YR-----------------NNSVSWAGGSFHFDNLF----- 905 (1167)
Q Consensus 856 ~l~~i~~~v~~~~~--~~~pl~gvllslsg~~~------~r-----------------~n~~T~~~G~~~f~~L~----- 905 (1167)
..|++.|+++|+++ .+.+|+||.|.|-..++ ++ ..++||++|.+.|.+|.
T Consensus 352 ~~G~v~i~KvD~dd~~~~~~LaGAeF~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~~G~~~i~gL~~~d~~ 431 (488)
T 3uxf_A 352 KYGKVILTKTGTDDLADKTKYNGAQFQVYECTKTASGATLRDSDPSTQTVDPLTIGGEKTFTTAGQGTVEINYLRANDYV 431 (488)
T ss_dssp EEEEEEEEEEETTCCSCGGGGTTCEEEEEEEEEETTEEEECCSCTTSSSCCCCCBTTBSCEECBTTTEEEEEEEECTTEE
T ss_pred EEeeEEEEEecCCcCCCCcccCCCEEEEEeccCCcccceeeecccccccccceecCCceEEEECCCCEEEEcCeEeeccc
Confidence 46899999998753 57999999999865432 11 24789999999999999
Q ss_pred ----------CcceEEeec--cCccccCCCceeEEecCCcE
Q 001065 906 ----------PGNFYLRPL--LKEYAFSPPAQAIELGSGES 934 (1167)
Q Consensus 906 ----------PG~Y~~~~~--~key~~~p~~~~i~v~~G~~ 934 (1167)
+|+|+|+++ ..+|.+.+.++.|+|.+++.
T Consensus 432 ~~~~~~~~~~~~~Y~l~EtkAP~GY~l~~~pi~f~v~~~~~ 472 (488)
T 3uxf_A 432 NGAKKDQLTDEDYYCLVETKAPEGYNLQADPLPFRVLAEKA 472 (488)
T ss_dssp TTEECCSCCTTSEEEEEEEECCTTBCCCSSCEEECCCHHHH
T ss_pred ccccccccCCCCcEEEEEeeCCCCcccCCCcEEEEEecCcc
Confidence 789999987 67999999999999988866
No 34
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=96.65 E-value=0.0022 Score=81.82 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=56.5
Q ss_pred CCCcccceEEEEEeCC-CcEEEeEEecCCcEEEeCCCCCccEEE-EEEcCCCcccCCceEEEEEcCC
Q 001065 47 ARLDYSHVTVELRTLD-GLVKESTQCAPNGYYFIPVYDKGSFVI-KVNGPEGWSWNPDKVAVTVDDT 111 (1167)
Q Consensus 47 ~~i~~sgv~v~L~~~~-G~~~~~t~t~~nG~y~~~~l~~G~Y~l-~~~~P~G~~~~p~~~~v~Vd~~ 111 (1167)
..-.|+||+|+|++.+ +..+.+.+|+.+|.+.|..|+||+|+| |.++|.||....+.+.++|+.+
T Consensus 58 ~~~~L~GA~F~l~~~~~~~~~~~~tTd~~G~~~~~~L~~G~Y~l~Et~AP~GY~l~~~~~~v~v~~~ 124 (893)
T 2ww8_A 58 GGALLGDAVFELKNNTDGTTVSQRTEAQTGEAIFSNIKPGTYTLTEAQPPVGYKPSTKQWTVEVEKN 124 (893)
T ss_dssp TTCBCCCCEEEEEETTTCCEEEEECCTTTCEEEEEEECSEEEEEEEEECCTTBCCCCCEEEEEECTT
T ss_pred CCCccCCCEEEEEECCCCeEEEEEEECCCCeEEECCCCCCcEEEEEccCCCceecCCccEEEEECCC
Confidence 4467999999999987 455666678999999999999999999 8999999999999899998764
No 35
>3pf2_A Cell WALL surface anchor family protein; pilus shaft component, IGG-DEV fold, IGG-REV fold, CNA A TYP type, IG-like fold; 1.70A {Streptococcus agalactiae serogroup V} PDB: 3pg2_A
Probab=96.62 E-value=0.0035 Score=70.68 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=54.0
Q ss_pred CCCcccceEEEEEeCCCcEEE-------------------------eEEecCCcEEEeCCCC-------Cc---cEEE-E
Q 001065 47 ARLDYSHVTVELRTLDGLVKE-------------------------STQCAPNGYYFIPVYD-------KG---SFVI-K 90 (1167)
Q Consensus 47 ~~i~~sgv~v~L~~~~G~~~~-------------------------~t~t~~nG~y~~~~l~-------~G---~Y~l-~ 90 (1167)
....|+||+|+|++.+|.... .-+|+.+|.+.|..|. +| .|+| |
T Consensus 193 ~~~~L~GA~F~L~~~~g~~~~~~~~~~k~~~~~~~~~~~~~~g~~~~~tt~~~G~~~~~gL~~~~~~~~~G~~~~Y~l~E 272 (319)
T 3pf2_A 193 ETQTLGGAEFDLLASDGTAVKWTDALIKANTNKNYIAGEAVTGQPIKLKSHTDGTFEIKGLAYAVDANAEGTAVTYKLKE 272 (319)
T ss_dssp SCSBCCCCEEEEEETTSCBCBCCHHHHHHCCCGGGBSSCCCTTSBCEEECCTTSEEEEEEECCSTTSCTTCCCEEEEEEE
T ss_pred CCcccCCCEEEEEeCCCCEEeeeeeccccccccceeccccccCceeEEEECCCCEEEEccccccccccCCCCcceEEEEE
Confidence 356799999999998875431 2356789999998888 47 9999 8
Q ss_pred EEcCCCcccCCceEEEEEcCC
Q 001065 91 VNGPEGWSWNPDKVAVTVDDT 111 (1167)
Q Consensus 91 ~~~P~G~~~~p~~~~v~Vd~~ 111 (1167)
.++|.||.+.+..+.++|..+
T Consensus 273 tkAP~GY~l~~~~~~f~v~~~ 293 (319)
T 3pf2_A 273 TKAPEGYVIPDKEIEFTVSQT 293 (319)
T ss_dssp EECCTTBCCCSSCEEEEECTT
T ss_pred eeCCCCcccCCCcEEEEEecC
Confidence 999999999999999999875
No 36
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=96.55 E-value=0.15 Score=70.09 Aligned_cols=208 Identities=14% Similarity=0.098 Sum_probs=104.8
Q ss_pred ceEEEEEeCCCcEEEE-EEeCCCceEEE------ccccCceEEEEEEcCCce-------eEe----ecceEEEEccCCee
Q 001065 150 NVNVELLSHSGDLISS-VITSSEGSYLF------KNIIPGKYKLRASHPNLS-------VEV----RGSTEVELGFENGE 211 (1167)
Q Consensus 150 Gv~V~L~~~~g~~i~~-ttTd~~G~f~f------~~l~pG~Y~l~~~~~g~~-------~~~----~~~~~V~v~~~~~~ 211 (1167)
-++|+|.+.+|..+.. ..+...|.|.| .+.+.|.|+|++...++. +.+ .++.+|++.....
T Consensus 158 ~v~v~l~dP~G~~i~~~~~~~~~G~~~~~~f~Lp~~~~~G~w~I~v~~~~~~~~~~s~~F~VeEYvlP~feV~i~~~~~- 236 (1676)
T 3cu7_A 158 ETVLTFIDPEGSEVDMVEEIDHIGIISFPDFKIPSNPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEPEYN- 236 (1676)
T ss_dssp CEEEEEEETTTEECCCEEECCSSSEEECCCEECCSSCCCEEEEEEEEBSSSCCCEEEEEEEECEECCCSSEECCEESCS-
T ss_pred ceEEEEECCCCCEEEEEeeecCCCceecceeeCCCCccccceEEEEEecCCCCceEEEEEEEccccCceEEEEEEccCc-
Confidence 3789999999954432 23347898884 445679999999875431 111 1223333322111
Q ss_pred Eeeeeeccc-eEEeeEEEe---CCCce-ec-eEEEEEECCCCcccCCCCCCCcccccceee---EEEeCCCCeEEEc---
Q 001065 212 VDDIFFAPG-YEIRGLVVA---QGNPI-LG-VHIYLYSDDVGKVDCPQGSGNALGERKALC---HAVSDADGKFMFK--- 279 (1167)
Q Consensus 212 ~~~~l~~~G-~~isG~V~~---~g~Pl-~G-a~V~L~~~~~~~~~c~~g~~~~~~~g~~~~---~~~TD~~G~f~f~--- 279 (1167)
.+.+.+ -.+..+|.. -|+|+ .| +.|.+.... .|..+. ...++ ..++..+|.+.|.
T Consensus 237 ---~~~~~d~~~~~v~v~A~Y~yG~PV~~G~a~v~~~~~~----~~~~~~------~~~~~~~~~~~~l~~G~~~~~~~~ 303 (1676)
T 3cu7_A 237 ---FIGYKNFKNFEITIKARYFYNKVVTEADVYITFGIRE----DLKDDQ------KEMMQTAMQNTMLINGIAQVTFDS 303 (1676)
T ss_dssp ---EECSTTSSCCEEEECEEETTTEECSEEEEEEEEEEES----CSSCSC------CEEESSCCBCCCEETTBEEEECCT
T ss_pred ---EEEecCCCEEEEEEEEEEcCCceeecCeEEEEEEEee----ccCCCc------ceecccceEEEEeccceEEEEEeH
Confidence 122222 234445543 49999 88 766554321 000000 00011 1112147777663
Q ss_pred -ccC------------CccEEEEEEEec---CCeE------EEecCceEEEEEeccceeeeeeeEEec--eEEEEEEEeC
Q 001065 280 -SVP------------CGQYELVPHYKG---ENTV------FDVSPSLVSMSVRHQHVTVPEKFQVTG--FSVGGRVVDE 335 (1167)
Q Consensus 280 -~Lp------------pG~Y~v~~~~~~---~~~~------~~~~P~~~~vtV~~~~~~l~~~f~~~g--~sV~G~V~d~ 335 (1167)
.+. +..+.|.+.-.. .... +.+.+....+.+... + .+-..| +.+.-.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~l~v~a~V~E~~gg~~~~~~~~~i~i~~~~~~i~~~~~----~-~~~k~g~p~~~~v~~~~~ 378 (1676)
T 3cu7_A 304 ETAVKELSYYSLEDLNNKYLYIAVTVIESTGGFSEEAEIPGIKYVLSPYKLNLVAT----P-LFLKPGIPYPIKVQVKDS 378 (1676)
T ss_dssp TTTTTTTSSCCCSTTCCSEEEEEEEEEESSSCCCEEEEECCCEECSCSEEECCBSC----C-SEECSSSCEEEEEEEEET
T ss_pred HHhhhhccccchhhccCceEEEEEEEEECCCCeEEEeeEEEEEEEeeeEEEEEecC----C-CcccCCCcEEEEEEEEcC
Confidence 111 234566554211 1111 123333333332211 1 121223 3455567899
Q ss_pred CCCceeceEEEEcc-ee-------------eeEeCCCc--eEEECcCCCcc--EEEEEEe
Q 001065 336 NDMGVEGVKILVDG-HE-------------RSITDRDG--YYKLDQVTSNR--YTIEAVK 377 (1167)
Q Consensus 336 ~G~pl~Ga~V~l~G-~~-------------~~~TD~dG--~y~~~~L~pG~--Y~I~~~~ 377 (1167)
+|+|+++..|.+.. .. ..+||++| .|.| +++.|. |.|++..
T Consensus 379 dG~p~~~~~v~l~~~~~~~~~~~~~~~~~~~~~t~~~G~~~~~~-~~~~~~~~~~l~v~~ 437 (1676)
T 3cu7_A 379 LDQLVGGVPVTLNAQTIDVNQETSDLDPSKSVTRVDDGVASFVL-NLPSGVTVLEFNVKT 437 (1676)
T ss_dssp TCCBCCSCEEEEEEEEEETTSCEEECCCEEEECCSSSCEEEEEE-CCCTTEEEEEEEEEE
T ss_pred CCCccCcceEEEeccccccccccccccccceeEECCCCeEEEEE-ECCCCCeEEEEEEEE
Confidence 99999999998832 11 24789999 5666 455553 6777764
No 37
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa}
Probab=96.51 E-value=0.0012 Score=65.67 Aligned_cols=55 Identities=16% Similarity=0.403 Sum_probs=43.3
Q ss_pred ceeeceeecCCceEEEecCCCcceEEeecc-----CccccCCCc----eeEEecCCcEEEEEEE
Q 001065 886 GYRNNSVSWAGGSFHFDNLFPGNFYLRPLL-----KEYAFSPPA----QAIELGSGESREVIFQ 940 (1167)
Q Consensus 886 ~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~-----key~~~p~~----~~i~v~~G~~~~v~~~ 940 (1167)
.|+.-.++|++|.|.|.+|+||+|||...+ .++...|.. +.|+|+.||+.+|.++
T Consensus 86 ~y~r~t~cD~~G~F~F~~Lp~G~Yyl~a~v~w~~~~~~~~~~qgg~lmk~V~v~ggq~~~v~l~ 149 (150)
T 3qec_A 86 TYVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGSQPQKVLLT 149 (150)
T ss_dssp GGCEEEECCTTSEEEEEEECSEEEEEEEEEEEEEESSSSEEEEEEEEEEEEEESSSCCCCEEEC
T ss_pred cceeEEEeCCCCcEEECCCCCccEEEEEEEEeccCCCCCcccccceEEEEEEEcCCcEEEEEec
Confidence 466667999999999999999999998653 356544433 4589999999998875
No 38
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1
Probab=96.39 E-value=0.0032 Score=74.18 Aligned_cols=89 Identities=11% Similarity=0.216 Sum_probs=68.4
Q ss_pred eEEEeeeEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEEecCCCcceEEeeccCccccCCCceeEEecC
Q 001065 852 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFSPPAQAIELGS 931 (1167)
Q Consensus 852 f~~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~p~~~~i~v~~ 931 (1167)
|-.+..+.|..+|.|++ |+||+||.+.+.|.... ...+||.+|.|.+ .|.||.|.+.....+|. +..+.|.|.+
T Consensus 290 ~l~qv~~~I~G~V~D~~--g~pi~gA~V~v~g~~~~-~~~~Td~~G~y~~-~l~~G~Y~l~vs~~Gy~--~~~~~v~v~~ 363 (426)
T 1uwy_A 290 YIKQVHLGVKGQVFDQN--GNPLPNVIVEVQDRKHI-CPYRTNKYGEYYL-LLLPGSYIINVTVPGHD--PHITKVIIPE 363 (426)
T ss_dssp HHGGGGCSEEEEEECTT--SCBCCSCEEEETTCCCS-SCCBCCTTCEEEE-CCCSEEEEEEEECSSSC--CEEEEEEECS
T ss_pred hhccccceeEEEEECCC--CCccCceEEEEEecccc-ceeEeCCCCEEEe-ccCCeeEEEEEEEcCcc--cEEEEEEEeC
Confidence 43445678999999864 89999999999987411 1279999999998 69999999999999997 5556688888
Q ss_pred Cc----EEEEEEEEEeeeE
Q 001065 932 GE----SREVIFQATRVAY 946 (1167)
Q Consensus 932 G~----~~~v~~~~~r~~~ 946 (1167)
++ +..+.|+.....-
T Consensus 364 ~~~~~~~~~~~~~L~~~~~ 382 (426)
T 1uwy_A 364 KSQNFSALKKDILLPFQGQ 382 (426)
T ss_dssp SCSSSSCEECCEECSSCC-
T ss_pred CCccccceEEEEEEecCCc
Confidence 86 5666666655543
No 39
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster}
Probab=96.37 E-value=0.0039 Score=73.55 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=67.5
Q ss_pred EEeeeEEEEEEEccCCCCCcccceEEEEECC-cceeeceeecCCceEEEecCCCcceEEeeccCcc-ccCCCceeEEecC
Q 001065 854 CQKLSQISVRIYSKDDAGEPIPSVLLSLSGD-DGYRNNSVSWAGGSFHFDNLFPGNFYLRPLLKEY-AFSPPAQAIELGS 931 (1167)
Q Consensus 854 ~~~l~~i~~~v~~~~~~~~pl~gvllslsg~-~~~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~key-~~~p~~~~i~v~~ 931 (1167)
.+...+|..+|.|++ |+||+||.+.|.|. + ...+||++|.|.+ .|.||+|.|+....+| . +..+.|+|..
T Consensus 333 ~~~~~gv~G~V~D~~--G~pi~gA~V~v~g~~~---~~~~Td~~G~y~~-~l~pG~Y~l~vs~~Gy~~--~~~~~v~v~~ 404 (435)
T 3mn8_A 333 RQAHIGIKGLVTDAS--GFPIADANVYVAGLEE---KPMRTSKRGEYWR-LLTPGLYSVHASAFGYQT--SAPQQVRVTN 404 (435)
T ss_dssp HGGGSSEEEEEECSS--SCBCTTCEEEETTCTT---SCEECCTTCEEEE-CCCSEEEEEEEEBTTBCC--CCCEEEEECC
T ss_pred ccccceeEEEEECCC--CCccCceEEEEecccc---cceEeCCCCeEEE-ecCCCcEEEEEEEccccc--ceEEEEEEec
Confidence 344567999999874 99999999999883 3 4578999999977 5999999999999999 5 4577788888
Q ss_pred Cc--EEEEEEEEEeeeE
Q 001065 932 GE--SREVIFQATRVAY 946 (1167)
Q Consensus 932 G~--~~~v~~~~~r~~~ 946 (1167)
++ ...+.|+.++..-
T Consensus 405 ~~~~~~~~~~~L~~~~~ 421 (435)
T 3mn8_A 405 DNQEALRLDFKLAPVET 421 (435)
T ss_dssp CSSSCEECCEECCBC--
T ss_pred CCcceeEEEEEEeecCC
Confidence 87 4577777776654
No 40
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B
Probab=96.28 E-value=0.0049 Score=68.10 Aligned_cols=68 Identities=25% Similarity=0.542 Sum_probs=54.9
Q ss_pred EeceEEEEEEEeC-------CCCceeceEEEEcceee-eEeCCCceEEECcCCCcc--EEEEEEeccccccceeeEEE
Q 001065 323 VTGFSVGGRVVDE-------NDMGVEGVKILVDGHER-SITDRDGYYKLDQVTSNR--YTIEAVKVHYKFNKLKEYMV 390 (1167)
Q Consensus 323 ~~g~sV~G~V~d~-------~G~pl~Ga~V~l~G~~~-~~TD~dG~y~~~~L~pG~--Y~I~~~~~~y~~~~~~~v~v 390 (1167)
..+++|+|.|... ....-+|++|++.|... ++||++|+|++.++|+|+ |+|..++++|.......+.+
T Consensus 155 ~~~~~vsGYi~~~~~~~~~~~~~~~~G~~V~i~gt~~sa~tD~~G~f~I~~vp~~~~~ytl~i~~~g~l~~~i~~~~v 232 (321)
T 3kcp_A 155 IEGYKVSGYILPDFSFDATVAPLVKAGFKVEIVGTELYAVTDANGYFEITGVPANASGYTLKISRATYLDRVIANVVV 232 (321)
T ss_dssp CSSEEEEEEEEESSCCCTTTHHHHHSCCEEEETTSSCEEECCTTSEEEEEEECCEEEEEEEEEECTEECCEEEEEEEE
T ss_pred CCCceEEEEEccccccccccchhccCCcEEEEEeccceeEECCCceEEEeccCCCCccEEEEEeecCceeeeeeeeEE
Confidence 4578999999864 23457899999977665 799999999999999998 99999999987666544443
No 41
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=96.22 E-value=0.041 Score=75.55 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=108.2
Q ss_pred eEEEEEeCCCcEEEE--EE-eCCCceEEEc-----cccCceEEEEEEcCCc---e----eEe----ecceEEEEccCCee
Q 001065 151 VNVELLSHSGDLISS--VI-TSSEGSYLFK-----NIIPGKYKLRASHPNL---S----VEV----RGSTEVELGFENGE 211 (1167)
Q Consensus 151 v~V~L~~~~g~~i~~--tt-Td~~G~f~f~-----~l~pG~Y~l~~~~~g~---~----~~~----~~~~~V~v~~~~~~ 211 (1167)
++|+|.+.+|..+.. .. ||..|.|.++ +.+.|.|+|++...+. . +.+ .++.+|++.....
T Consensus 162 v~v~l~dP~g~~i~~~~~~~t~~~G~~~~~f~Lp~~~~~G~w~I~v~~~~~~~~~~~~~F~VeEYvlP~feV~i~~~~~- 240 (1661)
T 2b39_A 162 VFITIETPDGIPVKRDSKSSQNQFGILTLSWNIPELVNMGVWKIKAYYEDSPQQVFSAEFEVKEYVLPSFEVQLEPEEK- 240 (1661)
T ss_dssp EEEEEEETTEEEEEEEEECTTTTTSCCEEEEECCSSCCCEEEEEEEEETTEEEEEEEEEEEECCCCCCSBCCEEECSSS-
T ss_pred EEEEEECCCCCEEeeeeecccccCCeEeeeeeCCCCccccceEEEEEeecCCCceEEEEEEEEEccCCcEEEEEEcCcc-
Confidence 789999999966653 23 4588876653 3356999999975431 1 111 1223333322111
Q ss_pred Eeeeeeccc--eEEeeEEEe---CCCceeceE-EEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEc--ccC-
Q 001065 212 VDDIFFAPG--YEIRGLVVA---QGNPILGVH-IYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFK--SVP- 282 (1167)
Q Consensus 212 ~~~~l~~~G--~~isG~V~~---~g~Pl~Ga~-V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~--~Lp- 282 (1167)
....+ -.+..+|.. .|.|++|.. +.+........ ...+ ........+|.+|+|.|. .++
T Consensus 241 ----~~~~~~~~~~~v~v~a~Y~~G~Pv~G~~~v~~~~~~~~~~------~~~~--~~~~~~~~~dg~G~~~l~~~~~~~ 308 (1661)
T 2b39_A 241 ----FYYIDDPDGLKVNIIARFLYGEQVDGTAFVIFGVQDGDRR------ISLT--HSLTRVPINDGNGEAILKRQVLLN 308 (1661)
T ss_dssp ----SCCSSCSSCCCEEEECBBSSSCBCCEEEEEEEEEECSSCE------ECCG--GGCEEEEESSSCEEECCCTTTTSS
T ss_pred ----eEecCCCcEEEEEEEEEEcCCCceeeEEEEEEEEecCCcc------cccC--cceeeeEecCCeEEEEEehHHhhc
Confidence 11123 344555654 499999863 22221110000 0000 011235678999999984 221
Q ss_pred -----------CccEEEEEEE-e--cCCeE------EEecCceEEEEEeccceeeeeeeEEeceE--EEEEEEeCCCCce
Q 001065 283 -----------CGQYELVPHY-K--GENTV------FDVSPSLVSMSVRHQHVTVPEKFQVTGFS--VGGRVVDENDMGV 340 (1167)
Q Consensus 283 -----------pG~Y~v~~~~-~--~~~~~------~~~~P~~~~vtV~~~~~~l~~~f~~~g~s--V~G~V~d~~G~pl 340 (1167)
.-.+.|.+.- . +.... +.+.+....+.+... ..+...|.. +.-.+.+.+|+|+
T Consensus 309 ~~~~~~~~~~~~~~~~v~a~V~e~~gg~~~~~~~~~i~i~~~~~~i~~~~~-----~~~~~~g~~~~~~v~~~~~dG~p~ 383 (1661)
T 2b39_A 309 GVQPSRADALVGKSIYVSATVILQSGSDMVEAERTGIPIVTSPYQIHFTKT-----PKFFKPAMPFDLMVYVTNPDGSPA 383 (1661)
T ss_dssp SCTTCHHHHSSSCBCEEEEEEEETTTCCCCEECCCCCBCCSCSSBCCBSSC-----CSEECSSEEEECCBBCBBTTTBCC
T ss_pred ccccCChhhccCcEEEEEEEEEEcCCceEEEeeeEEEEEEEeeEEEEEEeC-----CCccCCCCcEEEEEEEEcCCCCCc
Confidence 1245555532 1 11111 112222222222111 112223333 3334578899999
Q ss_pred eceEEEE-cceeeeEeCCCc--eEEECcCC--CccEEEEEEec
Q 001065 341 EGVKILV-DGHERSITDRDG--YYKLDQVT--SNRYTIEAVKV 378 (1167)
Q Consensus 341 ~Ga~V~l-~G~~~~~TD~dG--~y~~~~L~--pG~Y~I~~~~~ 378 (1167)
++..|.+ .++...+||++| .|.| +++ .|.|.|+++..
T Consensus 384 ~~~~v~v~~~~~~~~t~~~G~~~~~i-~~~~~~g~y~l~v~~~ 425 (1661)
T 2b39_A 384 RHIPVVTQGSNVQSLTQDDGVAKLSI-NTQNKRDPLTITVRTK 425 (1661)
T ss_dssp SSCCEEETTCCCCCCCSSSCBCCCEE-EECSCCSCEEEEEEEC
T ss_pred CCceEEEeccceEEEECCCCeEEEEE-ECCCCCcEEEEEEEEc
Confidence 9999988 444446889999 5666 344 47899998764
No 42
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B
Probab=96.05 E-value=2.6 Score=47.31 Aligned_cols=316 Identities=15% Similarity=0.125 Sum_probs=148.8
Q ss_pred CCCCeEEEEEeccchhhhhcccCceeEEEEeCCCceEEeCCCCCCceEE--EEEcCCCeEEeee------C---CceeEE
Q 001065 786 PLSGVNIRIIAAEDSQIASLKKGHLALETSTGADGSFIGGPLYDDITYN--VEASKPGYYLRQV------G---PNSFSC 854 (1167)
Q Consensus 786 ~l~gv~i~i~~~~~~~~~~~~~g~~~~~~~Td~~G~f~~~~L~~~~~y~--i~a~k~gy~~~~~------~---~~~f~~ 854 (1167)
.+.|-.|.....++. .+......+....-+|.+..|.++..|. |.|...+-.-.+. . +-.+..
T Consensus 31 ~~~~Y~v~~~~~~~~------~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~p~p~~l~~ 104 (375)
T 3t1w_A 31 DITGYRITTTPTNGQ------QGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSF 104 (375)
T ss_dssp SCCEEEEEEEETTCT------TSCCEEEEEETTCCEEEECCCCTTCCEEEEEEEEETTEECCCEEEEECCCCCCCSCCEE
T ss_pred CeeeEEEEEEECCCC------CCcceeEEcCCCccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEEeeEcCCCCCCceEEE
Confidence 355555655543321 1122334556677889999999876555 4454433221110 0 123333
Q ss_pred Eee--eEEEEEEEccCCCCCcccceEEEEECCcc---eeeceeecCCceEEEecCCCcceE-Ee--eccCccccCCCcee
Q 001065 855 QKL--SQISVRIYSKDDAGEPIPSVLLSLSGDDG---YRNNSVSWAGGSFHFDNLFPGNFY-LR--PLLKEYAFSPPAQA 926 (1167)
Q Consensus 855 ~~l--~~i~~~v~~~~~~~~pl~gvllslsg~~~---~r~n~~T~~~G~~~f~~L~PG~Y~-~~--~~~key~~~p~~~~ 926 (1167)
... .+|.|.-... .+.++.+-.+.....+. .+........-.+.+.+|.||+-| ++ +.-..-.-.|....
T Consensus 105 ~~~~~~si~l~W~~~--~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~ 182 (375)
T 3t1w_A 105 VDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLT 182 (375)
T ss_dssp ECCCSSEEEEECCCC--CCTTEEEEEEEEEESSSCCSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEEE
T ss_pred EecCCCeEEEEEECC--CCCCceEEEEEEEECCCCCceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeeee
Confidence 322 3344433322 23456666666554322 122234556678999999999744 44 33222111122221
Q ss_pred EEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEEeCC--CCeeeEEeecCcceEEEcCCCCCCEEEEEEEec
Q 001065 927 IELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSES--KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 1004 (1167)
Q Consensus 927 i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~~~--~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~ 1004 (1167)
+.........+.+.... ..++.=+=....+.++.+-.|+....+ ............-.|.|.||.||+.|.+++.+.
T Consensus 183 ~~t~~~~p~~l~~~~~~-~~si~l~W~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~ 261 (375)
T 3t1w_A 183 QQTAVPPPTDLRFTNIG-PDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSV 261 (375)
T ss_dssp EECCCCCCEEEEEESCC-SSCEEEEEECCSSCCCCEEEEEEEEGGGTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred eecCCCCCceeEEEecc-cCEEEEEEcCCCCCCccEEEEEEEeCCCCCCcEEEEcCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence 21122222333222111 111111112233445667777766433 223344444556899999999999999999975
Q ss_pred cCCCCcceeecCCceEEEEecCcccccceEEEEecCCeEEEEEEEEecccccccceeEEEEEecCCCCceEEEEeeCCce
Q 001065 1005 DGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSN 1084 (1167)
Q Consensus 1005 ~~~~~~~i~~~~p~~~~v~v~~~d~~~~~f~~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~~v~~~~~~~~~~ 1084 (1167)
...| .+.|....+.....--.++.+..+. ...+.|+ =... ......-.|..+..+..........-....
T Consensus 262 ~~~g-----~s~~~~~~~~t~p~~P~~l~~~~~~-~~sv~l~--W~~p--~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~ 331 (375)
T 3t1w_A 262 YEQH-----ESTPLRGRQKTGLDSPTGIDFSDIT-ANSFTVH--WIAP--RATITGYRIRHHPEHFSGRPREDRVPHSRN 331 (375)
T ss_dssp ETTE-----ECCCEEEEEECCCCCCEEEEEESCC-SSCEEEE--EECC--SSCCSEEEEEEEETTCCSSCEEEEEETTCC
T ss_pred cCCC-----cCCceeeEEecCCCCCCccEeeecc-CCEEEEE--ECCC--CcceeeEEEEEEECCCCCcceeEEcCCCcc
Confidence 3322 1223333232222222233222111 1111121 1111 122345566666655422222212223456
Q ss_pred eEEeccCCCC-cEEEEEEecCCCcceeeeeeeEEEEEEecc
Q 001065 1085 FFQVKDLPKG-KHLLQLRSSLPSSTHRFESEIIEVDLEKNA 1124 (1167)
Q Consensus 1085 ~f~~~~l~~~-~y~v~l~s~l~~~~~~~~~~~~~~~~~~~~ 1124 (1167)
.|.+..|.+| .|.+++...-. .-++....-.++.+.
T Consensus 332 ~~~i~~L~p~t~Y~~~V~A~~~----~G~s~p~s~~~~~~~ 368 (375)
T 3t1w_A 332 SITLTNLTPGTEYVVSIVALNG----REESPLLIGQQSTVS 368 (375)
T ss_dssp EEEECSCCTTCEEEEEEEEEET----TEECCCEEEEEECCC
T ss_pred EEEECCCCCCCEEEEEEEEECC----CCCCCceeeeeEEee
Confidence 7899999999 68888886321 123344444454444
No 43
>3hr6_A SPAA, putative surface-anchored fimbrial subunit; multiple IG-like domains, cell WALL, peptidoglycan-anchor, structural protein; 1.60A {Corynebacterium diphtheriae} PDB: 3htl_X*
Probab=95.88 E-value=0.0073 Score=71.07 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=52.7
Q ss_pred CCCcccceEEEEEeCCCcE-------------EEeEEecCCcEEEeCCC--------------------CCccEEE-EEE
Q 001065 47 ARLDYSHVTVELRTLDGLV-------------KESTQCAPNGYYFIPVY--------------------DKGSFVI-KVN 92 (1167)
Q Consensus 47 ~~i~~sgv~v~L~~~~G~~-------------~~~t~t~~nG~y~~~~l--------------------~~G~Y~l-~~~ 92 (1167)
....|+||+|+|++.++.. ...-+|+.+|.+.|..| .+|+|+| |.+
T Consensus 319 ~~~~L~GA~F~L~~~~~~~~~~~~~~~~~~~~~~~~tTd~~G~~~~~gL~~~~~~~~~~~~~~~~~~~~~~g~Y~lvETk 398 (436)
T 3hr6_A 319 TPGADRTATFQLHRCEADGSLVKSDPPISLDGKQEFVTGQDGKAVLSGIHLGTLQLESNVMKYTDAWAGKGTEFCLVETA 398 (436)
T ss_dssp CCCTTCCCEEEEEEECTTSCBCTTCCCCCBTTBCCEECCTTSEEEEEEEEEEEEEEETTEEEEEETTTTSCSEEEEEEEE
T ss_pred CCcccCCCEEEEEECCCCccccccCCceeeccceEEEeCCCcEEEEeCccccccccccccccccccccCCCCeEEEEEec
Confidence 3467999999999876531 12336788999999888 5799999 899
Q ss_pred cCCCcccCCceEEEEEcCC
Q 001065 93 GPEGWSWNPDKVAVTVDDT 111 (1167)
Q Consensus 93 ~P~G~~~~p~~~~v~Vd~~ 111 (1167)
+|.||.+.+..+.++|..+
T Consensus 399 AP~GY~l~~~pi~fti~~~ 417 (436)
T 3hr6_A 399 TASGYELLPKPVIVKLEAN 417 (436)
T ss_dssp CCTTCBCCSSCEEECCCCC
T ss_pred CCCCcCcCCCcEEEEEecC
Confidence 9999999999999888775
No 44
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1
Probab=95.85 E-value=0.0049 Score=62.42 Aligned_cols=54 Identities=17% Similarity=0.409 Sum_probs=40.2
Q ss_pred eeeceeecCCceEEEecCCCcceEEeecc---Cc--cccCCC----ceeEEecCCcEEEEEEE
Q 001065 887 YRNNSVSWAGGSFHFDNLFPGNFYLRPLL---KE--YAFSPP----AQAIELGSGESREVIFQ 940 (1167)
Q Consensus 887 ~r~n~~T~~~G~~~f~~L~PG~Y~~~~~~---ke--y~~~p~----~~~i~v~~G~~~~v~~~ 940 (1167)
|+.-.++|++|.|.|.+|+||+|||...+ .+ |...+. .+.|+|+.||+.+|+++
T Consensus 107 y~r~t~~D~~G~F~F~~Lp~G~Yyl~a~v~w~~~~~~~~~~qgg~l~k~Vtv~~Ge~~~v~L~ 169 (170)
T 1xpn_A 107 YVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGSQPQKVLLT 169 (170)
T ss_dssp HCEEEEECSSCEEEECSCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECCSSCEEEEEC
T ss_pred ceeEEEecCCCcEEecCCCCccEEEEEEEeccCccccccccccceEEEEEEeCCCcEEEEEec
Confidence 66677999999999999999999998752 22 221111 23488999999988764
No 45
>3qdh_A Fimbrial structural subunit; isopeptide bonds, actinomyces type 2 fimbriae, CNAA/DEV-IGG CNAB/IGG-REV fold, cell ahdesion, pilin; 1.90A {Actinomyces naeslundii}
Probab=95.85 E-value=0.0069 Score=67.48 Aligned_cols=63 Identities=10% Similarity=0.156 Sum_probs=48.7
Q ss_pred CcccceEEEEEeCCCc------------EE-----EeEEecCCcEEEeCCC-----------------CCccEEE-EEEc
Q 001065 49 LDYSHVTVELRTLDGL------------VK-----ESTQCAPNGYYFIPVY-----------------DKGSFVI-KVNG 93 (1167)
Q Consensus 49 i~~sgv~v~L~~~~G~------------~~-----~~t~t~~nG~y~~~~l-----------------~~G~Y~l-~~~~ 93 (1167)
-.|+||+|+|++.+|. .+ ..-+|+.+|.+.|..| ++|+|+| |.++
T Consensus 176 ~~L~GA~F~L~~~~~~~~~~~~~~~~g~~i~~~~~~~~tTd~~G~~~~~gL~~~d~~~~~~~~~~~~~~~~~Y~l~EtkA 255 (290)
T 3qdh_A 176 AGLQGAQFQLYKAKNAYAGTCTKDKEGDPIAINGETTLTTDAQGAINVKGLFISDSIDGANRDNQKDATARCYVLVETKA 255 (290)
T ss_dssp -CCTTCEEEEEEESSTTCSSCCSCEESSCCCBTTBSSEECCTTSEEEEEEEEEEESCCCTTSSCCTTCSEEEEEEEEEEC
T ss_pred cccCCCEEEEEECCCcccceeeccccCceEecCCceEEEECCCCEEEEeCcccccccccccccccccCCCceEEEEEccC
Confidence 5799999999987653 11 2346788999999888 6799999 8999
Q ss_pred CCCcccCCc---eEEEEEcCC
Q 001065 94 PEGWSWNPD---KVAVTVDDT 111 (1167)
Q Consensus 94 P~G~~~~p~---~~~v~Vd~~ 111 (1167)
|.||.+... ..++.|..+
T Consensus 256 P~GY~l~~~~~~~~~~~v~~~ 276 (290)
T 3qdh_A 256 PAGYVLPAGDGAVTPVKIEVG 276 (290)
T ss_dssp CTTBCCCCGGGGEEEEEEEC-
T ss_pred CCCeEcCcCcCCceeEEEECC
Confidence 999999877 666666554
No 46
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=95.81 E-value=0.0074 Score=65.38 Aligned_cols=48 Identities=25% Similarity=0.430 Sum_probs=41.7
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+
T Consensus 103 l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~TI~Pg~Y~~ 169 (254)
T 2boy_A 103 LIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEI 169 (254)
T ss_dssp EEEEEEEECTTSCBCCSCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCCCEEC
T ss_pred EEEEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCCCCCCCCeeEEEeCCCceEEEEEECCccccC
Confidence 4689999999999999999999 3422 3589999999999999999986
No 47
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A
Probab=95.74 E-value=1.1 Score=48.57 Aligned_cols=196 Identities=16% Similarity=0.199 Sum_probs=96.2
Q ss_pred cCCceEEEecCCCcceE-Ee--eccCccccCCCceeEEecC--CcEEEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEE
Q 001065 894 WAGGSFHFDNLFPGNFY-LR--PLLKEYAFSPPAQAIELGS--GESREVIFQATRVAYSATGTITLLSGQPKDGVSVEAR 968 (1167)
Q Consensus 894 ~~~G~~~f~~L~PG~Y~-~~--~~~key~~~p~~~~i~v~~--G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~ 968 (1167)
...-.+.+.+|.||.-| ++ +.-..-.-.+....+...+ ..-..+.+... ...++.=+=...+ .++.+-.|+..
T Consensus 71 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~t~~~~~~P~~l~~~~~-~~~sv~l~W~~p~-~~~~~Y~v~~~ 148 (290)
T 3r8q_A 71 PDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDA-TETTITISWRTKT-ETITGFQVDAV 148 (290)
T ss_dssp TTCCEEEECSCCSSCEEEEEEEEEETTEECCCEEEEEECCCCCCCCEEEEEEEE-CSSCEEEEEECCS-CCCCEEEEEEE
T ss_pred CCccEEEeCCCCCCCEEEEEEEEEeCCCCCCCcceeEecCCCCCCCceeEEEEc-CCCeEEEEEeCCC-CcccEEEEEEE
Confidence 34557889999999755 44 3322222222322233222 22233433321 1111111112222 35677777776
Q ss_pred eCCCC-eeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecCcccccceEEEEecCCeEEEEE
Q 001065 969 SESKG-YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSG 1047 (1167)
Q Consensus 969 ~~~~~-~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~~~~~f~~~~~~~~~~i~g 1047 (1167)
..+.. ..........-.|.|.||.||+.|.+++.+....| .+.|..........--.++..... ....+.|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g-----~s~~~~~~~~t~p~~P~~l~~~~~-~~~sv~l~- 221 (290)
T 3r8q_A 149 PANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA-----RSSPVVIDASTAIDAPSNLRFLAT-TPNSLLVS- 221 (290)
T ss_dssp ESSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTE-----ECCCEEEEEECCCCCCEEEEEEEE-ETTEEEEE-
T ss_pred ECCCCcceEEecCCCccEEEECCCCCCCEEEEEEEEEeCCc-----ccCCEEEEecCCCCCCCccEEEee-CCCEEEEE-
Confidence 54422 23333444566899999999999999999753322 223433333333333334433333 12222222
Q ss_pred EEEecccccccceeEEEEEecCCCCceEEEEee-CCceeEEeccCCCC-cEEEEEEe
Q 001065 1048 HVEGNRIKELNSHLLVEIKSASDTSKVESVISL-PMSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1048 ~V~~~~~~~~~~~l~v~l~~~~~~~~v~~~~~~-~~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
=... ........|..+..+... -...... .....|.+..|.+| .|.+++..
T Consensus 222 -W~~p--~~~~~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A 274 (290)
T 3r8q_A 222 -WQPP--RARITGYIIKYEKPGSPP-REVVPRPRPGVTEATITGLEPGTEYTIYVIA 274 (290)
T ss_dssp -EECC--SSCCCEEEEEEECTTSCC-EECSSCCCTTCCEEEECSCCTTCEEEEEEEE
T ss_pred -EeCC--CCcccEEEEEEEeCCCCc-ceeEeccCCCccEEEECCCCCCCEEEEEEEE
Confidence 1111 122345556665544321 1110111 23457889999999 68888875
No 48
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=95.65 E-value=0.017 Score=64.38 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=41.9
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----cce--------------eeeEeCCCceEEECcCCCccEEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGH--------------ERSITDRDGYYKLDQVTSNRYTIE 374 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~--------------~~~~TD~dG~y~~~~L~pG~Y~I~ 374 (1167)
..|.|+|+|.+|+||+||.|.+ +|. -...||++|+|.|.-+.||.|.+-
T Consensus 137 l~v~G~V~D~~G~Pv~gA~VeiWqada~G~Y~~~~~~~~~~~~rGr~~TD~~G~y~F~TI~Pg~Y~ip 204 (312)
T 2xsu_A 137 LIIEGTVTDTEGNIIEGAKVEVWHANSLGNYSFFDKSQSDFNLRRTILTDVNGKYVALTTMPVGYGCP 204 (312)
T ss_dssp EEEEEEEEETTSCBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCCCEECC
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCCCCCCCCCCCeeEEEeCCCceEEEEEECcCcccCC
Confidence 4689999999999999999999 332 135899999999999999999853
No 49
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=95.49 E-value=0.81 Score=56.57 Aligned_cols=208 Identities=14% Similarity=0.200 Sum_probs=108.0
Q ss_pred ceEEEEEeCCCcEEEeEE--ec-CCcEEE----eC-CCCCccEEEEEEcCC--Cc----ccC-----CceEEEEEcCCCc
Q 001065 53 HVTVELRTLDGLVKESTQ--CA-PNGYYF----IP-VYDKGSFVIKVNGPE--GW----SWN-----PDKVAVTVDDTGC 113 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t~--t~-~nG~y~----~~-~l~~G~Y~l~~~~P~--G~----~~~-----p~~~~v~Vd~~~~ 113 (1167)
-++|.|.|++|+.+.+.. ++ .+|.|. +| ....|.|.|++..-. +. .|. +-..+|.++...
T Consensus 140 ~v~v~l~dP~g~~i~~~~~~~~~~~G~~~~~f~Lp~~~~~G~w~I~v~~~~~~~~~~~~~F~VeeYvlP~feV~i~~~~- 218 (645)
T 2hr0_A 140 TVMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEPTE- 218 (645)
T ss_dssp EEEEEEECTTSCEEEEEEEECTTTTTEEEEEEECCSSCCCSEEEEEEEETTCTTSEEEEEEECCCSCCCCCEEEEEESS-
T ss_pred eEEEEEECCCCCEEEEEEeeccccCCeEEEEEECCCccccccEEEEEEECCCCCceEEEEEEEeeccCCeEEEEEEcCc-
Confidence 478999999999877643 22 567554 33 335699999987532 11 111 222233333210
Q ss_pred CCcceeeEEEeC--cEEEEEEEeccCCccccCCCCCCcc-eEEEEE--eCCC------cEEEEEEeCCCceEEEcc--c-
Q 001065 114 NGNEDINFRFTG--FTLLGRVVGAIGGESCLDKGGGPSN-VNVELL--SHSG------DLISSVITSSEGSYLFKN--I- 179 (1167)
Q Consensus 114 s~~~dinf~~~g--~~IsG~V~~~~g~~s~~~~~~plaG-v~V~L~--~~~g------~~i~~ttTd~~G~f~f~~--l- 179 (1167)
.+...+ -.+..+|....= -|.|++| +.|... ..+. .......+|.+|.|.|.- +
T Consensus 219 ------~~~~~~~~~~~~v~v~a~Y~------~G~Pv~G~a~v~~~~~~~~~~~~~~~~~~~~~~~dg~g~~~l~~~~~~ 286 (645)
T 2hr0_A 219 ------KFYYIYNEKGLEVTITARFL------YGKKVEGTAFVIFGIQDGEQRISLPESLKRIPIEDGSGEVVLSRKVLL 286 (645)
T ss_dssp ------SSEETTCTTCEEEEEEEECT------TSCBCCEEEEEEEEEEETTEEEECGGGCEEEEEBTTEEEEEECHHHHH
T ss_pred ------eeEecCCCcEEEEEEEEEEc------CCCeeeeEEEEEEEEeeCCeeeecCchheeEEeeCCeEEEEEeHHHhh
Confidence 011122 233334432210 2689998 665532 2110 112466689999999851 1
Q ss_pred -----------cCceEEEEEEc---CCceeEeecceEEEEccCCeeEe----eeeeccceEEeeEEE---eCCCceeceE
Q 001065 180 -----------IPGKYKLRASH---PNLSVEVRGSTEVELGFENGEVD----DIFFAPGYEIRGLVV---AQGNPILGVH 238 (1167)
Q Consensus 180 -----------~pG~Y~l~~~~---~g~~~~~~~~~~V~v~~~~~~~~----~~l~~~G~~isG~V~---~~g~Pl~Ga~ 238 (1167)
.+..+.|.++- .|-......+..+.+......+. ......|....+.|. .+|+|++|+.
T Consensus 287 ~~~~~~~~~~~~~~~~~v~a~V~e~~g~~~~~~~~~~i~i~~~~~~i~~~~~~~~~~~g~~~~~~v~~~~~dG~p~~~~~ 366 (645)
T 2hr0_A 287 DGVQNLRAEDLVGKSLYVSATVILHSGSDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSPAYRVP 366 (645)
T ss_dssp TSCSSCSGGGGTTCEEEEEEEEEESSSSCEEEEEEEEEEEESCSCEEECSSSCSBCCTTSEEEEEEEEECSSSSBCSCCC
T ss_pred hhhcccccccccCcEEEEEEEEEECCCCeEEEeeeeeEEEEEeeEEEEEEeCccccCCCCcEEEEEEEEcCCCCccCCEE
Confidence 12246565432 22111111123344433332221 123345655566554 3699999998
Q ss_pred EEEEECCCCcccCCCCCCCcccccceeeEEEeCCCC--eEEEcccCC--ccEEEEEEEe
Q 001065 239 IYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADG--KFMFKSVPC--GQYELVPHYK 293 (1167)
Q Consensus 239 V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G--~f~f~~Lpp--G~Y~v~~~~~ 293 (1167)
+.|... .....+||++| .|.|. ++. |.|.|.+.+.
T Consensus 367 v~l~~~-------------------~~~~~~t~~~G~~~~~i~-~~~~~g~y~l~v~~~ 405 (645)
T 2hr0_A 367 VAVQGE-------------------DTVQSLTQGDGVAKLSIN-THPSQKPLSITVRTK 405 (645)
T ss_dssp EEESSS-------------------CCSCCCCCTTSEEEEEEE-CCSCSSCEEEEEEEC
T ss_pred EEEecC-------------------cceeeEECCCCcEEEEEE-CCCCCeEEEEEEEEc
Confidence 887531 01246788999 45553 444 8899988654
No 50
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=95.48 E-value=0.016 Score=62.40 Aligned_cols=48 Identities=29% Similarity=0.465 Sum_probs=41.5
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----cce-------------------eeeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGH-------------------ERSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~-------------------~~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|. -...||++|+|.|.-+.||.|.+
T Consensus 79 i~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~Yp~ 150 (241)
T 2bum_B 79 VIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPW 150 (241)
T ss_dssp EEEEEEEEETTSCBCCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEECCCCEEE
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCceeCCCCCCcccccCCCccceeEEEeCCCceEEEEEecCCcccc
Confidence 4689999999999999999999 332 12489999999999999999987
No 51
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=95.42 E-value=1.2 Score=59.71 Aligned_cols=208 Identities=15% Similarity=0.058 Sum_probs=108.1
Q ss_pred ceEEEEEeCCCcEEEeEE--ecCCcEEE----eCC-CCCccEEEEEEcCCCc----ccC-----CceEEEEEcCCCcCCc
Q 001065 53 HVTVELRTLDGLVKESTQ--CAPNGYYF----IPV-YDKGSFVIKVNGPEGW----SWN-----PDKVAVTVDDTGCNGN 116 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t~--t~~nG~y~----~~~-l~~G~Y~l~~~~P~G~----~~~-----p~~~~v~Vd~~~~s~~ 116 (1167)
-++|+|.|++|+.+.+.. ++.+|.|. +|. ...|.|.|++...++- .|. +-..+|.++....
T Consensus 136 ~v~v~l~dp~g~~i~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~I~~~~~~~~~~~~~F~VeeYvlP~feV~i~~~~~--- 212 (1325)
T 2pn5_A 136 SVYVTIRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISVEVEGEELVSKTFEVKEYVLSTFDVQVMPSVI--- 212 (1325)
T ss_dssp EEEEEEECTTCCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEEETTEEEEEEEEEECCSCCCCEEEEEEESSC---
T ss_pred cEEEEEECCCCCEEEEEecccCCCCeEecceECCCCccccceEEEEEeCCCcEEEEEEEEEeccCceEEEEEecCce---
Confidence 379999999999877753 34566544 433 3579999998764321 111 2222333332100
Q ss_pred ceeeEEEeCcEEEEEEEeccCCccccCCCCCCcc-eEEEEEeCCCcEEEEEEeCCCceEEEccccC-------c--eEEE
Q 001065 117 EDINFRFTGFTLLGRVVGAIGGESCLDKGGGPSN-VNVELLSHSGDLISSVITSSEGSYLFKNIIP-------G--KYKL 186 (1167)
Q Consensus 117 ~dinf~~~g~~IsG~V~~~~g~~s~~~~~~plaG-v~V~L~~~~g~~i~~ttTd~~G~f~f~~l~p-------G--~Y~l 186 (1167)
+...+-.+..+|....= .|.|++| ++|.+.......-...++|.+|.+.+. ++. . .|.|
T Consensus 213 ----~~~~~~~~~v~v~a~Y~------~G~Pv~G~~~v~v~~~~~~~~~~~~~d~~G~~~~~-~~~~~~~~~~~~~~~~v 281 (1325)
T 2pn5_A 213 ----PLEEHQAVNLTIEANYH------FGKPVQGVAKVELYLDDDKLKLKKELTVYGKGQVE-LRFDNFAMDADQQDVPV 281 (1325)
T ss_dssp ----CBGGGCEEEEEEEEEES------SSCBCEEEEEEEEEETTTTEEEEEEEEEESEEEEE-EECSSCCCSSSEEEEEE
T ss_pred ----EEecCCeEEEEEEEEEc------CCCeeeeEEEEEEEECCCCcceeEEEecCcEEEEE-EehhHhccccccceEEE
Confidence 00112223333322110 2689999 888876543323345678899988875 321 2 3444
Q ss_pred EEEc----CCceeEeecceEEEEccCCeeEe----eeeeccceEEeeEEE---eCCCceeceEEEEEECCCCcccCCCCC
Q 001065 187 RASH----PNLSVEVRGSTEVELGFENGEVD----DIFFAPGYEIRGLVV---AQGNPILGVHIYLYSDDVGKVDCPQGS 255 (1167)
Q Consensus 187 ~~~~----~g~~~~~~~~~~V~v~~~~~~~~----~~l~~~G~~isG~V~---~~g~Pl~Ga~V~L~~~~~~~~~c~~g~ 255 (1167)
.++- .|.... .+..+.+......+. .....+|....+.|. .+|+|+++..+.+.-..
T Consensus 282 ~a~V~e~~tg~~~~--~~~~i~i~~~~~~i~~~~~~~~~~~g~~~~~~v~~~~~dG~p~~~~~~~v~~~~---------- 349 (1325)
T 2pn5_A 282 KVSFVEQYTNRTVV--KQSQITVYRYAYRVELIKESPQFRPGLPFKCALQFTHHDGTPAKGISGKVEVSD---------- 349 (1325)
T ss_dssp EEEEEETTTCCEEE--EEEEEEEESSSCEEEEEESSSSBCTTSCEEEEEEEECTTSCBCTTCEEEEEEGG----------
T ss_pred EEEEEECCCcEEEE--eeEEEEEEEeeEEEEEEeCCCcccCCCCEEEEEEEECCCCCcCCCCceeEEEEE----------
Confidence 4431 233222 123344433332221 122334555555544 36999998654442211
Q ss_pred CCcccccceeeEEEeCCCCeEEEccc--CCccEE-EEEEE
Q 001065 256 GNALGERKALCHAVSDADGKFMFKSV--PCGQYE-LVPHY 292 (1167)
Q Consensus 256 ~~~~~~g~~~~~~~TD~~G~f~f~~L--ppG~Y~-v~~~~ 292 (1167)
..+.+..+||++|...|.-- ..|.|. |.+.+
T Consensus 350 ------~~~~~~~~t~~~G~~~~~~~~~~~g~y~~l~v~~ 383 (1325)
T 2pn5_A 350 ------VRFETTTTSDNDGLIKLELQPSEGTEQLSIHFNA 383 (1325)
T ss_dssp ------GTEEEEEECCTTSEEEEEECCCTTCCEEEEEEEC
T ss_pred ------ecceEEEEeCCCCcEEEEEECCCCCeEEEEEEEE
Confidence 01245688999997666422 257886 77653
No 52
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A
Probab=95.40 E-value=0.048 Score=64.92 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=50.7
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeEeecceEEEEc
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVEVRGSTEVELG 206 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~~~~~~~V~v~ 206 (1167)
+|+|+|. | .+.+.+.|.+.+..+ .-..+.||++|.|++++|+||+|+|.+..+|+... ...|+|.
T Consensus 259 tVsG~V~---G--------~~~~~~avv~~~~k~-~qywt~td~~G~FtI~~V~pGtY~L~a~~~G~~~~---~~~VtV~ 323 (508)
T 1nkg_A 259 KVAGTAS---G--------ADSSMDWVVHWYNDA-AQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVA---TSSVTVS 323 (508)
T ss_dssp EEEEEEE---S--------SCTTSCEEEEEECSS-CEEEEECCTTCEEECCCBCSEEEEEEEEETTEEEE---EEEEEEC
T ss_pred EEEEEEc---C--------ccCCceEEEEEcCCC-ceeEEEECCCCcEEeCCcCCceEEEEEEECceEEE---EeEEEEc
Confidence 6888876 2 333334444434434 34678999999999999999999999999999544 3567777
Q ss_pred cCCee
Q 001065 207 FENGE 211 (1167)
Q Consensus 207 ~~~~~ 211 (1167)
++...
T Consensus 324 aG~t~ 328 (508)
T 1nkg_A 324 AGSTT 328 (508)
T ss_dssp TTCEE
T ss_pred CCCee
Confidence 76653
No 53
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=95.26 E-value=0.014 Score=65.06 Aligned_cols=48 Identities=27% Similarity=0.487 Sum_probs=41.6
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+
T Consensus 133 l~v~G~V~D~~G~Pv~gA~VeiWqada~G~Y~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~Y~~ 199 (311)
T 2azq_A 133 MFLQGQVFDANGKPLAGATVDLWHANTQGTYSYFDSTQSEFNLRRRIITDAEGRYRARSIVPSGYGC 199 (311)
T ss_dssp EEEEEEEECSSSCBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTCEEEEEEECCCCEEC
T ss_pred EEEEEEEEcCCCCCCCCceeEEEecCCCCccCCCCCCCCCCCCeeEEEeCCCceEEEEEEcCCCcCC
Confidence 4589999999999999999999 3322 2589999999999999999985
No 54
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=95.25 E-value=0.019 Score=62.36 Aligned_cols=49 Identities=27% Similarity=0.417 Sum_probs=41.6
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCCceEEECcCCCccEEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTIE 374 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~dG~y~~~~L~pG~Y~I~ 374 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||-|.+-
T Consensus 100 l~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~TD~~G~y~F~TI~P~~Ypip 167 (260)
T 3th1_A 100 LIIRGTVRSDTGELLAGAVIDVWHSTPDGLYSGIHDNIPVDYYRGKLVTDSQGNYRVRTTMPVPYQIP 167 (260)
T ss_dssp EEEEEEEEETTSCBCSSCEEEEEECCTTSCCTTTSTTCCTTBTEEEEECCTTSEEEEEEECCCCEECC
T ss_pred EEEEEEEECCCCCCcCCcEEEEEecCCCCcccCcCCCCCCCCCceEEEeCCCCEEEEEEECCCCCCCC
Confidence 4589999999999999999999 3321 24899999999999999999763
No 55
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B
Probab=95.17 E-value=2.6 Score=47.35 Aligned_cols=136 Identities=18% Similarity=0.287 Sum_probs=71.6
Q ss_pred CCccCccEEEEEeCCC--CeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecCcccccceE
Q 001065 957 GQPKDGVSVEARSESK--GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDF 1034 (1167)
Q Consensus 957 g~p~~gv~v~~~~~~~--~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~~~~~f 1034 (1167)
+.++.+-.|+....+. ...+.......-.|.|.||.||+.|.+++.+....| .+.|..........-..++.+
T Consensus 121 ~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g-----~s~~s~~~~~t~~~~p~~l~~ 195 (375)
T 3t1w_A 121 SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGG-----ESAPTTLTQQTAVPPPTDLRF 195 (375)
T ss_dssp CTTEEEEEEEEEESSSCCSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTE-----ECCCEEEEEECCCCCCEEEEE
T ss_pred CCCceEEEEEEEECCCCCceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCc-----ccCCeeeeeecCCCCCceeEE
Confidence 4466677777665442 223445555677999999999999999999753322 222333222222222223222
Q ss_pred EEEecCCeEEEEEEEEecccccccceeEEEEEecCCCCceEEEEeeC-CceeEEeccCCCC-cEEEEEEe
Q 001065 1035 LVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLP-MSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1035 ~~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~~v~~~~~~~-~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
... ....+.|+ =.... ...+....|+.+..+....... ..++ ....+.+..|.++ .|.+++..
T Consensus 196 ~~~-~~~si~l~--W~~p~-~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A 260 (375)
T 3t1w_A 196 TNI-GPDTMRVT--WAPPP-SIDLTNFLVRYSPVKNEEDVAE-LSISPSDNAVVLTNLLPGTEYVVSVSS 260 (375)
T ss_dssp ESC-CSSCEEEE--EECCS-SCCCCEEEEEEEEGGGTTCCEE-EEECTTCCEEEECSCCTTCEEEEEEEE
T ss_pred Eec-ccCEEEEE--EcCCC-CCCccEEEEEEEeCCCCCCcEE-EEcCCCcCEEEeCCCCCCCEEEEEEEE
Confidence 211 11222222 11111 1123455566665543222333 3333 3477899999998 58888775
No 56
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A
Probab=95.13 E-value=0.037 Score=65.92 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=48.1
Q ss_pred eEEEEEEEeCCCCceec-eEEEE--cc-eeeeEeCCCceEEECcCCCccEEEEEEeccccccceeeEEEcCCcc
Q 001065 326 FSVGGRVVDENDMGVEG-VKILV--DG-HERSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLKEYMVLPNMA 395 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~G-a~V~l--~G-~~~~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~~v~v~p~~~ 395 (1167)
.+|+|+|. |+|.+. +.|.+ .+ +.-+.||++|+|++.+|+||+|+|.+.++++.+... .+.|.++..
T Consensus 258 GtVsG~V~---G~~~~~~avv~~~~k~~qywt~td~~G~FtI~~V~pGtY~L~a~~~G~~~~~~-~VtV~aG~t 327 (508)
T 1nkg_A 258 GKVAGTAS---GADSSMDWVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVATS-SVTVSAGST 327 (508)
T ss_dssp BEEEEEEE---SSCTTSCEEEEEECSSCEEEEECCTTCEEECCCBCSEEEEEEEEETTEEEEEE-EEEECTTCE
T ss_pred cEEEEEEc---CccCCceEEEEEcCCCceeEEEECCCCcEEeCCcCCceEEEEEEECceEEEEe-EEEEcCCCe
Confidence 58999988 665332 33333 22 233799999999999999999999999999754443 577777653
No 57
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=95.10 E-value=0.019 Score=63.37 Aligned_cols=49 Identities=31% Similarity=0.432 Sum_probs=42.3
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----cce-------------eeeEeCCCceEEECcCCCccEEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGH-------------ERSITDRDGYYKLDQVTSNRYTIE 374 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~-------------~~~~TD~dG~y~~~~L~pG~Y~I~ 374 (1167)
..|.|+|+|.+|+||+||.|.+ +|. -...||++|+|.|.-+.||.|.+-
T Consensus 134 l~v~G~V~D~~G~Pv~~A~VEiWqada~G~Y~~~~~~~~~~~rGr~~TD~~G~y~F~TI~Pg~Yp~p 200 (293)
T 1tmx_A 134 CWVEGTVTDTDGNPVPDARIEVWEADDDGFYDVQYDDDRTAARAHLLSGPDGGYAFWAITPTPYPIP 200 (293)
T ss_dssp EEEEEEEEETTSCBCTTCEEEEECCCTTSCCGGGSSSCCCCSEEEEECCTTSEEEEEEECCCCEECC
T ss_pred EEEEEEEECCCCCCCCCceeEEEecCCCCcccCCccCCCCCceeEEEeCCCceEEEEEECCCcccCC
Confidence 4689999999999999999999 342 125899999999999999999864
No 58
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=94.95 E-value=0.02 Score=63.78 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=41.3
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee----------------eeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE----------------RSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~----------------~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+
T Consensus 134 l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~~RGr~~TD~~G~y~F~TI~Pg~Yp~ 202 (311)
T 1dmh_A 134 LILHGTIFDADGKPLPNAKVEIWHANTKGFYSHFDPTGEQQAFNMRRSIITDENGQYRVRTILPAGYGC 202 (311)
T ss_dssp EEEEEEEECTTSCBCTTCEEEEEECCTTSCCTTSCTTSCCSTTTTEEEEECCTTSEEEEEEECCCCEEC
T ss_pred EEEEEEEEcCCCCCCCCcEEEEEccCCCcccCCcCCcccCCCCCCeeEEEeCCCceEEEEEEcCCcccC
Confidence 4589999999999999999999 3321 2589999999999999999986
No 59
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=94.87 E-value=0.024 Score=53.75 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=46.5
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEE---ccccCceEEEEEEcCCc
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLF---KNIIPGKYKLRASHPNL 193 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f---~~l~pG~Y~l~~~~~g~ 193 (1167)
.|+-.|++.. .|.|.+|+.|+|...+ +.+.+.+||+||+... ..+.+|.|+|.+....|
T Consensus 11 ~lstHVLDt~-------~G~PAagv~V~L~~~~-~~l~~~~Tn~DGR~~~l~~~~~~~G~Y~L~F~tg~Y 72 (116)
T 3qva_A 11 TLSTHILDIS-------TGTPAEGVTVSLSREG-ETLANLVTNAQGRIATFSAAPLPAGRYCLTAETGAW 72 (116)
T ss_dssp CEEEEEEETT-------TTEECTTCEEEEEETT-EEEEEEECCTTSEECCSCSSCBCSSEEEEEECHHHH
T ss_pred CeeeEEeecC-------CCcCCCCCEEEEEEcc-EeEEEeccCCCCCccccccccCCCceEEEEEeHHHH
Confidence 3677788752 5789999999999866 7789999999999842 23678999999965544
No 60
>3uxf_A Fimbrial subunit type 1; adhesin, isopeptide, GRAM-positive, beta sandwich, surface, cell adhesion; 1.60A {Actinomyces oris}
Probab=94.84 E-value=0.012 Score=70.24 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=52.0
Q ss_pred CCCcccceEEEEEeCCCc-----EE-----------------EeEEecCCcEEEeCCCC---------------CccEEE
Q 001065 47 ARLDYSHVTVELRTLDGL-----VK-----------------ESTQCAPNGYYFIPVYD---------------KGSFVI 89 (1167)
Q Consensus 47 ~~i~~sgv~v~L~~~~G~-----~~-----------------~~t~t~~nG~y~~~~l~---------------~G~Y~l 89 (1167)
....|+||+|+|++.+|. ++ ..-+|+.+|.+.|..|. +|+|+|
T Consensus 368 ~~~~LaGAeF~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~~G~~~i~gL~~~d~~~~~~~~~~~~~~~Y~l 447 (488)
T 3uxf_A 368 DKTKYNGAQFQVYECTKTASGATLRDSDPSTQTVDPLTIGGEKTFTTAGQGTVEINYLRANDYVNGAKKDQLTDEDYYCL 447 (488)
T ss_dssp CGGGGTTCEEEEEEEEEETTEEEECCSCTTSSSCCCCCBTTBSCEECBTTTEEEEEEEECTTEETTEECCSCCTTSEEEE
T ss_pred CCcccCCCEEEEEeccCCcccceeeecccccccccceecCCceEEEECCCCEEEEcCeEeecccccccccccCCCCcEEE
Confidence 456799999999986643 11 12367889999998887 679999
Q ss_pred -EEEcCCCcccCCceEEEEEcCC
Q 001065 90 -KVNGPEGWSWNPDKVAVTVDDT 111 (1167)
Q Consensus 90 -~~~~P~G~~~~p~~~~v~Vd~~ 111 (1167)
|.++|.||.+.+..+.++|..+
T Consensus 448 ~EtkAP~GY~l~~~pi~f~v~~~ 470 (488)
T 3uxf_A 448 VETKAPEGYNLQADPLPFRVLAE 470 (488)
T ss_dssp EEEECCTTBCCCSSCEEECCCHH
T ss_pred EEeeCCCCcccCCCcEEEEEecC
Confidence 8999999999999888887654
No 61
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=94.82 E-value=0.052 Score=60.45 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=43.5
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCC--C------------cEEEEEEeCCCceEEEccccCceEEEE
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G------------DLISSVITSSEGSYLFKNIIPGKYKLR 187 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~--g------------~~i~~ttTd~~G~f~f~~l~pG~Y~l~ 187 (1167)
.|.|+|++. ++.|++||.|+++..+ | ..-....||++|+|.|.-+.||.|.+-
T Consensus 138 ~v~G~V~D~--------~G~Pv~gA~VeiWqada~G~Y~~~~~~~~~~~~rGr~~TD~~G~y~F~TI~Pg~Y~ip 204 (312)
T 2xsu_A 138 IIEGTVTDT--------EGNIIEGAKVEVWHANSLGNYSFFDKSQSDFNLRRTILTDVNGKYVALTTMPVGYGCP 204 (312)
T ss_dssp EEEEEEEET--------TSCBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCCCEECC
T ss_pred EEEEEEECC--------CCCCCCCCEEEEEecCCCCcccCCCCCCCCCCCeeEEEeCCCceEEEEEECcCcccCC
Confidence 478999985 3699999999999654 3 123578899999999999999999864
No 62
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=94.80 E-value=0.035 Score=59.46 Aligned_cols=48 Identities=31% Similarity=0.511 Sum_probs=41.2
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee-------------------eeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE-------------------RSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~-------------------~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+
T Consensus 78 i~l~G~V~D~~G~Pv~~A~VEiWqada~G~Y~~~~d~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~Yp~ 149 (238)
T 3t63_M 78 IIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPAPW 149 (238)
T ss_dssp EEEEEEEEETTSCBCTTCEEEEEECCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEECCCCEEE
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCCCCCccccccccCCCCcCceeEEEECCCceEEEEEECCcCccC
Confidence 4589999999999999999998 2311 1489999999999999999987
No 63
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B
Probab=94.77 E-value=0.024 Score=62.61 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=54.1
Q ss_pred EEEEccCCeeEeeeeeccceEEeeEEEeC--------CCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCC
Q 001065 202 EVELGFENGEVDDIFFAPGYEIRGLVVAQ--------GNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDAD 273 (1167)
Q Consensus 202 ~V~v~~~~~~~~~~l~~~G~~isG~V~~~--------g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~ 273 (1167)
.+.+..+...+.+...+.++.|+|.|..+ ...-+|++|++...+ ++++||++
T Consensus 139 ~~~~~nG~V~V~~~~~~~~~~vsGYi~~~~~~~~~~~~~~~~G~~V~i~gt~--------------------~sa~tD~~ 198 (321)
T 3kcp_A 139 ETDLINGGVLVTNKPVIEGYKVSGYILPDFSFDATVAPLVKAGFKVEIVGTE--------------------LYAVTDAN 198 (321)
T ss_dssp CCEEECEEEEECCCCCCSSEEEEEEEEESSCCCTTTHHHHHSCCEEEETTSS--------------------CEEECCTT
T ss_pred ceEEECCEEEECCCCCCCCceEEEEEccccccccccchhccCCcEEEEEecc--------------------ceeEECCC
Confidence 33444455555555667899999999853 235678888886542 58999999
Q ss_pred CeEEEcccCCcc--EEEEEEEe
Q 001065 274 GKFMFKSVPCGQ--YELVPHYK 293 (1167)
Q Consensus 274 G~f~f~~LppG~--Y~v~~~~~ 293 (1167)
|+|++.++|+|+ |+|....+
T Consensus 199 G~f~I~~vp~~~~~ytl~i~~~ 220 (321)
T 3kcp_A 199 GYFEITGVPANASGYTLKISRA 220 (321)
T ss_dssp SEEEEEEECCEEEEEEEEEECT
T ss_pred ceEEEeccCCCCccEEEEEeec
Confidence 999999999998 99999533
No 64
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=94.68 E-value=0.032 Score=61.46 Aligned_cols=49 Identities=31% Similarity=0.401 Sum_probs=41.8
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCCceEEECcCCCccEEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRDGYYKLDQVTSNRYTIE 374 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~dG~y~~~~L~pG~Y~I~ 374 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++|+|.|.-+.||.|.+-
T Consensus 130 l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~lRGr~~TD~~G~y~F~TI~Pg~Yp~p 197 (290)
T 3n9t_A 130 ALVYGRVLDVQGRPVVGAVLDVWQTADNGMYSGQDPDQPFGNLRGRYRSDNDGCFAIQTTVPVCYPIP 197 (290)
T ss_dssp EEEEEEEEETTSCBCSSCEEEEECCCTTSCCTTTSTTSCTTTTEEEEECCTTSEEEEEEECCCCEECC
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCCcCCCCCCCCCCCceeEEEeCCCceEEEEEeCCCCcCCC
Confidence 4589999999999999999999 2321 24899999999999999999873
No 65
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=94.67 E-value=0.032 Score=61.13 Aligned_cols=49 Identities=29% Similarity=0.574 Sum_probs=41.7
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----cce--------------eeeEeCCCceEEECcCCCccEEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGH--------------ERSITDRDGYYKLDQVTSNRYTIE 374 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~--------------~~~~TD~dG~y~~~~L~pG~Y~I~ 374 (1167)
..|.|+|+|.+|+||+||.|.+ +|. -...||++|+|.|.-+.||.|.+-
T Consensus 132 l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~lRGr~~TD~dG~y~F~TI~Pg~Yp~p 199 (280)
T 3hhy_A 132 LVFSGQVTDLDGNGLAGAKVELWHADNDGYYSQFAPHLPEWNLRGTIIADEEGRYEITTIQPAPYQIP 199 (280)
T ss_dssp EEEEEEEECTTSCBCSSCEEEEECCCTTSCCTTSSTTSCTTTTEEEEECCTTSEEEEEEECCCCEECC
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCCCCCCCCCCCCCcceEEEEeCCCceEEEEEECCcCcCCC
Confidence 4589999999999999999998 332 124899999999999999999764
No 66
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=94.63 E-value=0.038 Score=59.85 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=42.1
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--C------------CeeeEEeecCcceEEEcCCCCCCEEE
Q 001065 947 SATGTITLLSGQPKDGVSVEARSES--K------------GYYEETVTDTSGSYRLRGLHPDTTYV 998 (1167)
Q Consensus 947 s~~G~V~~~~g~p~~gv~v~~~~~~--~------------~~~~~~~Td~~G~~~i~gL~pg~~y~ 998 (1167)
.+.|+|.+.+|+|++|+.|++---+ + ..++...||++|+|+++-+.||+ |-
T Consensus 104 ~l~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~rGr~~Td~~G~y~F~TI~Pg~-Y~ 168 (254)
T 2boy_A 104 IFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAP-YE 168 (254)
T ss_dssp EEEEEEECTTSCBCCSCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTSEEEEEEECCCC-EE
T ss_pred EEEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCCCCCCCCeeEEEeCCCceEEEEEECCcc-cc
Confidence 4589999999999999999996221 1 23678999999999999999997 44
No 67
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=94.56 E-value=0.03 Score=58.60 Aligned_cols=49 Identities=27% Similarity=0.268 Sum_probs=41.6
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----ccee--------------eeEeCCC-ceEEECcCCCccEEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGHE--------------RSITDRD-GYYKLDQVTSNRYTIE 374 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~~--------------~~~TD~d-G~y~~~~L~pG~Y~I~ 374 (1167)
..|.|+|+|.+|+||+||.|.+ +|.. ...||++ |+|.|.-+.||.|.+.
T Consensus 49 l~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~f~~rGr~~TD~~~G~~~F~TI~Pg~Y~~~ 117 (200)
T 3t63_A 49 ILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNA 117 (200)
T ss_dssp EEEEECEECTTSCBCSSCEEEEEECCTTSCCCCBCCTTSSBCSEEEEECCSSCCSEEEEEECCCCEECT
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCCcCCCCCCCCCccccceEecCCCCCEEEEEEECCcCcCCC
Confidence 4589999999999999999998 3321 2489999 9999999999999863
No 68
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Probab=94.55 E-value=7.4 Score=43.37 Aligned_cols=293 Identities=16% Similarity=0.150 Sum_probs=135.8
Q ss_pred EEeCCCceEEeCCCCCCceEEE--EEcCCCeEEee------e---CCceeEEE--eeeEEEEEEEccCCCCCcccceEEE
Q 001065 814 TSTGADGSFIGGPLYDDITYNV--EASKPGYYLRQ------V---GPNSFSCQ--KLSQISVRIYSKDDAGEPIPSVLLS 880 (1167)
Q Consensus 814 ~~Td~~G~f~~~~L~~~~~y~i--~a~k~gy~~~~------~---~~~~f~~~--~l~~i~~~v~~~~~~~~pl~gvlls 880 (1167)
.+....-+|.+..|.++..|.+ .|...+-.-.+ . .+..+... .-.+|.|+-.... +.++.+-.+.
T Consensus 52 ~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~~~p~~l~~~~~~~~si~l~W~~p~--~~~~~~Y~v~ 129 (368)
T 1fnf_A 52 VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVR 129 (368)
T ss_dssp EECTTCCEEECCCCCTTSCEEEEEEEEETTEECCCEEEEECCCCCCCEEEEEESCCSSCEEEEEECCT--TCCCSEEEEE
T ss_pred EecCCcCEEEECCCCCCCEEEEEEEEEcCCCccCceeeeecCCCcCCceeEEEEcCCCeEEEEeeCCC--CCCCcEEEEE
Confidence 4455667899999998766654 44433211111 0 01223322 2334445444332 3456666665
Q ss_pred EECCcc---eeeceeecCCceEEEecCCCcceE-Ee--eccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEc
Q 001065 881 LSGDDG---YRNNSVSWAGGSFHFDNLFPGNFY-LR--PLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITL 954 (1167)
Q Consensus 881 lsg~~~---~r~n~~T~~~G~~~f~~L~PG~Y~-~~--~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~ 954 (1167)
....++ .+.-.+....-.+.+.+|.||..| ++ +.-..-.-.|...........-..+.+.... ..++.=+=..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~~~P~~l~~~~~~-~~sv~l~W~~ 208 (368)
T 1fnf_A 130 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDIT-ANSFTVHWIA 208 (368)
T ss_dssp EEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEESCC-SSEEEEEEEC
T ss_pred EEECCCCCccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeEeeecCCCCCCCccEEEEcc-CCEEEEEEeC
Confidence 543211 122123445668999999999855 43 3322111111111111111222222221110 1111111112
Q ss_pred CCCCccCccEEEEEeCC--CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecCcccccc
Q 001065 955 LSGQPKDGVSVEARSES--KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGL 1032 (1167)
Q Consensus 955 ~~g~p~~gv~v~~~~~~--~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~~~~ 1032 (1167)
.+ .++.|-.|+....+ ............-.|.|.||.||+.|.+++.+....|. ..+..........--.++
T Consensus 209 p~-~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~-----~~~~~~~~~t~p~~P~~l 282 (368)
T 1fnf_A 209 PR-ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREE-----SPLLIGQQSTVSDVPRDL 282 (368)
T ss_dssp CS-SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTEE-----CCCEEEEEECCCCSCEEE
T ss_pred CC-CCcCEEEEEEecCCCCCCccEEEeCCCcCEEEECCCCCCCEEEEEEEEEeCCcc-----CCcccccccCCCCCCCee
Confidence 22 24566666666433 22334444456678999999999999999997543221 111111111111111233
Q ss_pred eEEEEecCCeEEEEEEEEecccccccceeEEEEEecCCCCceEEEEee-CCceeEEeccCCCC-cEEEEEEecCCCccee
Q 001065 1033 DFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISL-PMSNFFQVKDLPKG-KHLLQLRSSLPSSTHR 1110 (1167)
Q Consensus 1033 ~f~~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~~v~~~~~~-~~~~~f~~~~l~~~-~y~v~l~s~l~~~~~~ 1110 (1167)
...... ...+.|+ =... ......-.|..+..+....... ..+ .....|.+..|.+| .|.+++...-....-.
T Consensus 283 ~~~~~~-~~sv~l~--W~~p--~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~ 356 (368)
T 1fnf_A 283 EVVAAT-PTSLLIS--WDAP--AVTVRYYRITYGETGGNSPVQE-FTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSP 356 (368)
T ss_dssp EEEEEE-TTEEEEE--EECC--SSCCSEEEEEEEETTCCSCCEE-EEEETTCCEEEECSCCTTCCEEEEEEEECCCSSSC
T ss_pred EEEecC-CCEEEEE--eeCC--CCccceEEEEEEECCCCCccEE-EEcCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCc
Confidence 332221 1222122 1111 1123455666665544333332 222 34567899999999 5888887654333333
Q ss_pred eeeeeEEEEEE
Q 001065 1111 FESEIIEVDLE 1121 (1167)
Q Consensus 1111 ~~~~~~~~~~~ 1121 (1167)
+.+..+.+.|+
T Consensus 357 ~s~~~~~i~~~ 367 (368)
T 1fnf_A 357 ASSKPISINYR 367 (368)
T ss_dssp CBCCCEEEEEC
T ss_pred ccCceeeeeee
Confidence 54455566553
No 69
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=94.55 E-value=0.026 Score=59.54 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=40.4
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----cce-------------------eeeEe-CCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGH-------------------ERSIT-DRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~-------------------~~~~T-D~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|. -...| |++|+|+|.-+.||.|..
T Consensus 53 l~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~T~d~~G~y~F~TI~Pg~yp~ 125 (209)
T 2bum_A 53 IRLEGQVFDGLGLPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFNTIKPGAVPG 125 (209)
T ss_dssp EEEEECEECTTSCBCSSCEEEEECCCTTSCCSSTTCCSCSCCCTTCCCEEEEECCTTTCCEEEEEECCCCCBC
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCccceeEEeeeCCCcEEEEEEEccCcccC
Confidence 4689999999999999999999 331 12467 999999999999999874
No 70
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=94.42 E-value=4.7 Score=49.54 Aligned_cols=212 Identities=18% Similarity=0.151 Sum_probs=106.3
Q ss_pred eEEEEEeCCCcEEEEEE-e-CCCceEEEccc-cCceEEEEEEcCCc------eeEe----ecceEEEEccCCeeEeeeee
Q 001065 151 VNVELLSHSGDLISSVI-T-SSEGSYLFKNI-IPGKYKLRASHPNL------SVEV----RGSTEVELGFENGEVDDIFF 217 (1167)
Q Consensus 151 v~V~L~~~~g~~i~~tt-T-d~~G~f~f~~l-~pG~Y~l~~~~~g~------~~~~----~~~~~V~v~~~~~~~~~~l~ 217 (1167)
++|+|.+.+|..+.... + +..+.|.+..- +.|.|+|.+...+. .+.+ .++.+|.+..... .+.
T Consensus 139 ~~v~i~dP~g~~i~~~~~~~~~~~~f~Lp~~~~~G~w~i~v~~~~~~~~~~~~F~Veeyv~P~feV~~~~~~~----~~~ 214 (627)
T 3hrz_A 139 VIVEFQTPEGILVSSNSVDLNFFWPYNLPDLVSLGTWRIVAKYEHSPENYTAYFDVRKYVLPSFEVRLQPSEK----FFY 214 (627)
T ss_dssp EEEEEECTTCCEEEEEEEBTTBCCCEECCSSCCCEEEEEEEEETTCSCCEEEEEEECCCCCCSEEEEEEESSS----EEE
T ss_pred EEEEEECCCCCEEEEEEeccceEEEEECCCCCCCeeEEEEEEECCCceEEEEEEEEeEEECCcEEEEEecCcc----eEE
Confidence 67888899997665422 2 23566766654 46999999875431 1221 2445555543221 111
Q ss_pred cc-ceEEeeEEEe---CCCceec-eEEEEEEC--CCCcccCCCCCCCcccccceeeEEEeCCCCeEEEccc---------
Q 001065 218 AP-GYEIRGLVVA---QGNPILG-VHIYLYSD--DVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSV--------- 281 (1167)
Q Consensus 218 ~~-G~~isG~V~~---~g~Pl~G-a~V~L~~~--~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~L--------- 281 (1167)
+. +-.+.++|.+ -|+|+.| |.+.+.-. +.....| .........|..|.|.|..-
T Consensus 215 ~~~~~~~~~~v~a~y~~G~Pv~G~v~v~~~~~~~~~~~~~~----------~~~~~~~~~~G~g~~~l~~~~~~~~~~~~ 284 (627)
T 3hrz_A 215 IDGNENFHVSITARYLYGEEVEGVAFVLFGVKIDDAKKSIP----------DSLTRIPIIDGDGKATLKRDTFRSRFPNL 284 (627)
T ss_dssp TTCCCCEEEEEEEEETTSCBCCEEEEEEEEEEETTEEEECG----------GGCEEEEEBTTEEEEEECHHHHHHHCCCG
T ss_pred ecCCCEEEEEEEEEECCCCEeccEEEEEEEEccCCceeecc----------chheeEEecCCeEEEEEEHHHhhhhhcch
Confidence 22 4455556654 4999988 44433211 1000000 00012345677788876521
Q ss_pred ---CCccEEEEEEEe-cCCeEEEecCceEEEEEeccceeee----eeeEEec--eEEEEEEEeCCCCceeceEEEE-cce
Q 001065 282 ---PCGQYELVPHYK-GENTVFDVSPSLVSMSVRHQHVTVP----EKFQVTG--FSVGGRVVDENDMGVEGVKILV-DGH 350 (1167)
Q Consensus 282 ---ppG~Y~v~~~~~-~~~~~~~~~P~~~~vtV~~~~~~l~----~~f~~~g--~sV~G~V~d~~G~pl~Ga~V~l-~G~ 350 (1167)
-...+.|.+.-. .+......+ ....+.+......+. ..+-..| +.+.-+|.+++|.|+++..|.+ .+.
T Consensus 285 ~~~~~~~l~v~a~V~~e~gt~~~~~-~~~~i~i~~~~~~i~f~~~~~~~kpG~p~~~~v~v~~~dg~P~~~~~V~v~~~~ 363 (627)
T 3hrz_A 285 NELVGHTLYASVTVMTESGSDMVVT-EQSGIHIVASPYQIHFTKTPKYFKPGMPYELTVYVTNPDGSPAAHVPVVSEAFH 363 (627)
T ss_dssp GGGTTCEEEEEEEEEETTSSCEEEE-EEEEEEEESSSCEEECTTSCSEECTTSCEEEEEEEECTTSCBCTTCEEEEGGGT
T ss_pred hhhcCcEEEEEEEEEEecCCeEEEc-ccceEEEEeecEEEEEEeccccccCCCcEEEEEEEECCCCCcCCCceEEEEcCc
Confidence 112345554322 222111100 001122221111110 1122234 4556667889999999999998 444
Q ss_pred eeeEeCCCceEEEC-cCCC--ccEEEEEEe
Q 001065 351 ERSITDRDGYYKLD-QVTS--NRYTIEAVK 377 (1167)
Q Consensus 351 ~~~~TD~dG~y~~~-~L~p--G~Y~I~~~~ 377 (1167)
...+||++|...|. +.+. +.+.|+++.
T Consensus 364 ~~~~td~~G~a~f~i~t~~~~~~l~i~~~~ 393 (627)
T 3hrz_A 364 SMGTTLSDGTAKLILNIPLNAQSLPITVRT 393 (627)
T ss_dssp EEEECCTTSEEEEEECCCTTCSEEEEEEEE
T ss_pred ceeEECCCCeEEEEEECCCCCcEEEEEEEe
Confidence 44689999975552 2332 456676654
No 71
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=94.39 E-value=0.072 Score=59.30 Aligned_cols=54 Identities=31% Similarity=0.522 Sum_probs=44.0
Q ss_pred cEEEEEEEeccCCccccCCCCCCcceEEEEEeCC--Cc------------EEEEEEeCCCceEEEccccCceEEEE
Q 001065 126 FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--GD------------LISSVITSSEGSYLFKNIIPGKYKLR 187 (1167)
Q Consensus 126 ~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~--g~------------~i~~ttTd~~G~f~f~~l~pG~Y~l~ 187 (1167)
..|.|+|++. ++.|++||.|+++..+ |. .-....||++|+|+|.-+.||.|.+-
T Consensus 133 l~v~G~V~D~--------~G~Pv~gA~VeiWqada~G~Y~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~Y~~p 200 (311)
T 2azq_A 133 MFLQGQVFDA--------NGKPLAGATVDLWHANTQGTYSYFDSTQSEFNLRRRIITDAEGRYRARSIVPSGYGCD 200 (311)
T ss_dssp EEEEEEEECS--------SSCBCTTCEEEEECCCTTSCCBTTBTTSCTTTTEEEEECCTTCEEEEEEECCCCEECC
T ss_pred EEEEEEEEcC--------CCCCCCCceeEEEecCCCCccCCCCCCCCCCCCeeEEEeCCCceEEEEEEcCCCcCCC
Confidence 3478999985 3699999999999665 31 23578899999999999999999864
No 72
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=94.37 E-value=0.074 Score=57.72 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=47.2
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVP 290 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~ 290 (1167)
..+.|+|.+ +|+||+||.|.++..+..-....+.. ..+. ....+...||++|+|.|..+.||.|-+-.
T Consensus 100 l~v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~-~~~~-~~~RG~~~TD~~G~y~F~TI~P~~Ypip~ 168 (260)
T 3th1_A 100 LIIRGTVRSDTGELLAGAVIDVWHSTPDGLYSGIHD-NIPV-DYYRGKLVTDSQGNYRVRTTMPVPYQIPY 168 (260)
T ss_dssp EEEEEEEEETTSCBCSSCEEEEEECCTTSCCTTTST-TCCT-TBTEEEEECCTTSEEEEEEECCCCEECCC
T ss_pred EEEEEEEECCCCCCcCCcEEEEEecCCCCcccCcCC-CCCC-CCCceEEEeCCCCEEEEEEECCCCCCCCC
Confidence 358899996 59999999999998753211111100 0111 12356789999999999999999997643
No 73
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=94.25 E-value=15 Score=49.57 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=105.9
Q ss_pred EEEEEeCCCcEEEE--EEeCCCceEEEc----c-ccCceEEEEEEcC-Cce----eEe----ecceEEEEccCCeeEeee
Q 001065 152 NVELLSHSGDLISS--VITSSEGSYLFK----N-IIPGKYKLRASHP-NLS----VEV----RGSTEVELGFENGEVDDI 215 (1167)
Q Consensus 152 ~V~L~~~~g~~i~~--ttTd~~G~f~f~----~-l~pG~Y~l~~~~~-g~~----~~~----~~~~~V~v~~~~~~~~~~ 215 (1167)
.|+|.+.+|..+.. ..++..|.+..+ . ...|.|+|.+... +-. +.+ .|+.+|.+.....
T Consensus 141 ~v~i~dp~g~~i~~~~~~~~~~G~~~~~f~L~~~~~~G~w~I~~~~~~~~~~~~~F~V~eYvlP~FeV~v~~~~~----- 215 (1451)
T 4acq_A 141 LVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVEEFVLPKFEVQVTVPKI----- 215 (1451)
T ss_dssp EEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTTCCEEEEEEEECCCCCCSCEEEEECCSE-----
T ss_pred EEEEECCCCCEEEEeeeccCCCCeEEEEeECCCCCCceeEEEEEEecCCceEEEEEEEeeeeCCcEEEEEeCCce-----
Confidence 57889999977654 567888866433 2 2459999999765 211 111 2344555543222
Q ss_pred eeccceEEeeEEEe---CCCceeceEEEEEE--CCCCcccCCCCCCCccccccee---eEEEeCCCCeEEEccc----C-
Q 001065 216 FFAPGYEIRGLVVA---QGNPILGVHIYLYS--DDVGKVDCPQGSGNALGERKAL---CHAVSDADGKFMFKSV----P- 282 (1167)
Q Consensus 216 l~~~G~~isG~V~~---~g~Pl~Ga~V~L~~--~~~~~~~c~~g~~~~~~~g~~~---~~~~TD~~G~f~f~~L----p- 282 (1167)
+.+.+-.+.++|.+ -|+|+.| .+++.- .......|.. .....+ ...++|.+|.+.+.-. .
T Consensus 216 ~~~~~~~~~~~i~a~Y~~G~pV~G-~~~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 288 (1451)
T 4acq_A 216 ITILEEEMNVSVCGLYTYGKPVPG-HVTVSICRKYSDASDCHG------EDSQAFCEKFSGQLNSHGCFYQQVKTKVFQL 288 (1451)
T ss_dssp EESSCSCCEEEEEEECSSSCBCCC-EEEECCBCCCTTTTTSCS------SCCCCCBCCEEEECCSSCCCEEECCGGGSCS
T ss_pred EeecCCEEEEEEEEEEcCCCEEcc-eEEEEEEEeccccccccc------cccccccceeeEEEcCCeEEEEEEEHHHhcc
Confidence 22333345555554 3999999 344421 1110001110 000112 2467888998877511 1
Q ss_pred -----CccEEEEEEEecC--Ce--------EEEecCceEEEEEeccceeeeeeeEEec--eEEEEEEEeCCCCceeceEE
Q 001065 283 -----CGQYELVPHYKGE--NT--------VFDVSPSLVSMSVRHQHVTVPEKFQVTG--FSVGGRVVDENDMGVEGVKI 345 (1167)
Q Consensus 283 -----pG~Y~v~~~~~~~--~~--------~~~~~P~~~~vtV~~~~~~l~~~f~~~g--~sV~G~V~d~~G~pl~Ga~V 345 (1167)
...+.|.+.-..+ +. .+.-+|-.+.|. .. +. +-..| |.+.-+|.+++|.|+++..|
T Consensus 289 ~~~~~~~~l~V~atVtE~gtg~~~~~~~~i~i~~s~~~i~f~--~t----~~-~fkPG~pf~~~v~v~~~dg~P~~~~~v 361 (1451)
T 4acq_A 289 KRKEYEMKLHTEAQIQEEGTVVELTGRQSSEITRTITKLSFV--KV----DS-HFRQGIPFFGQVRLVDGKGVPIPNKVI 361 (1451)
T ss_dssp SSSCCBCBCEEEEECSSSCCSCCEEECCCCEEECCCSEEEEE--EE----CS-EECSSSCCEEEEEEECTTSCBCCSCBC
T ss_pred hhhccCeEEEEEEEEEEccceEEEeceEEEEEEeeeeEEEEe--cC----CC-cccCCCcEEEEEEEEcCCCCcCCCceE
Confidence 1234554432111 11 111122222221 10 11 21223 45666778999999999988
Q ss_pred EE--cce---eeeEeCCCceEEEC-cCC---CccEEEEEE
Q 001065 346 LV--DGH---ERSITDRDGYYKLD-QVT---SNRYTIEAV 376 (1167)
Q Consensus 346 ~l--~G~---~~~~TD~dG~y~~~-~L~---pG~Y~I~~~ 376 (1167)
.+ ++. ...+||++|...|. +.+ .+.++|+++
T Consensus 362 ~v~~~~~~~~~~~~t~~~G~a~f~i~~~~~~~~~l~i~~~ 401 (1451)
T 4acq_A 362 FIRGNEANYYSNATTDEHGLVQFSINTTNVMGTSLTVRVN 401 (1451)
T ss_dssp EEEETTTCCCCCCBCCTTSEEEEECCCCSSSCEEEEEESC
T ss_pred EEEecccceeeeeEeCCCCcEEEEEeCCCCCCcEEEEEEE
Confidence 77 332 23589999976653 222 245778765
No 74
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Probab=94.22 E-value=7 Score=41.77 Aligned_cols=195 Identities=12% Similarity=0.115 Sum_probs=99.4
Q ss_pred cCCceEEEecCCCcceE-Ee--eccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEEeC
Q 001065 894 WAGGSFHFDNLFPGNFY-LR--PLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSE 970 (1167)
Q Consensus 894 ~~~G~~~f~~L~PG~Y~-~~--~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~~ 970 (1167)
...-.+.+.+|.||.-| ++ +.-..-.-.|....+....+.-..+.+..... .++.=+=.... .++.+-.|+....
T Consensus 65 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~t~p~~P~~l~~~~~~~-~sv~l~W~~p~-~~i~~Y~v~~~~~ 142 (283)
T 1tdq_A 65 PPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTA-TSLDLEWDNSE-AEAQEYKVVYSTL 142 (283)
T ss_dssp TTCSEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEEEECS-SCEEEEEECCS-SCCSEEEEEEEET
T ss_pred CCCCEEEecCCCCCCEEEEEEEEECCCCCCCCeeEEEECCCCCCCceEEEecCC-CeEEEEecCCC-CCccEEEEEEEeC
Confidence 34567889999999844 44 33222222233333444445555555433221 11111111222 3567777777755
Q ss_pred CCC-eeeEEeecC---cceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecCcccccceEEEEecCCeEEEE
Q 001065 971 SKG-YYEETVTDT---SGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILS 1046 (1167)
Q Consensus 971 ~~~-~~~~~~Td~---~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~~~~~f~~~~~~~~~~i~ 1046 (1167)
+.. ......... .-.|.|.||.||..|.+++.+....| .+.|......-...-..++...... ...+.|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g-----~s~~~~~~~~t~~~~P~~l~~~~~~-~~sv~l~ 216 (283)
T 1tdq_A 143 AGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSK-----QSIPATMNARTELDSPRDLMVTASS-ETSISLI 216 (283)
T ss_dssp TCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTE-----ECCCEEEEEECCCCCCEEEEEEEEC-SSCEEEE
T ss_pred CCCcceEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCC-----CCcceEEEecCCCCCCCccEEeEec-CCEEEEE
Confidence 422 223333434 67899999999999999999753221 2334333333222233344333332 1222222
Q ss_pred EEEEecccccccceeEEEEEecCCCCceEEEEee-CCceeEEeccCCCC-cEEEEEEec
Q 001065 1047 GHVEGNRIKELNSHLLVEIKSASDTSKVESVISL-PMSNFFQVKDLPKG-KHLLQLRSS 1103 (1167)
Q Consensus 1047 g~V~~~~~~~~~~~l~v~l~~~~~~~~v~~~~~~-~~~~~f~~~~l~~~-~y~v~l~s~ 1103 (1167)
=... ........|..+..+... .. ..+ .....|.+..|.+| .|.+++...
T Consensus 217 --W~~p--~~~i~~Y~v~~~~~~~~~--~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~ 268 (283)
T 1tdq_A 217 --WTKA--SGPIDHYRITFTPSSGIS--SE-VTVPRDRTSYTLTDLEPGAEYIISITAE 268 (283)
T ss_dssp --EECC--CSCCSEEEEEEECSSSCC--EE-EEEESSCSEEEECCCCTTCCEEEEEEEE
T ss_pred --EeCC--CCcccEEEEEEEcCCCCe--eE-EEeCCCccEEEECCCCCCCEEEEEEEEE
Confidence 1111 122335556665544322 11 222 33456889999998 588888753
No 75
>2xi9_A Ancillary protein 1; cell adhesion, GRAM positive pilus, intramolecular isopeptid internal thioester; 1.90A {Streptococcus pyogenes} PDB: 2xic_A 2xid_A
Probab=94.17 E-value=0.081 Score=61.79 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=53.4
Q ss_pred eEEEEEEEccCCCCCcccceEEEEECCcc--eee-ceeecCCceEEEecCCCcceEEeec--cCccccCCCceeEEecCC
Q 001065 858 SQISVRIYSKDDAGEPIPSVLLSLSGDDG--YRN-NSVSWAGGSFHFDNLFPGNFYLRPL--LKEYAFSPPAQAIELGSG 932 (1167)
Q Consensus 858 ~~i~~~v~~~~~~~~pl~gvllslsg~~~--~r~-n~~T~~~G~~~f~~L~PG~Y~~~~~--~key~~~p~~~~i~v~~G 932 (1167)
..|.|.+.+..+++++|+||.|.|...++ +.. ...++..+. +.+|.+|+|+|+++ ..+|.+ -.++.|+|+++
T Consensus 25 t~v~i~K~~~~d~~~~L~GA~f~L~~~~g~~v~e~~w~s~~~~~--~~~L~~G~YtL~Et~AP~GY~~-a~~I~FtV~~~ 101 (457)
T 2xi9_A 25 TSVLIRKYAIGDYSKLLEGATLQLTGDNVNSFQARVFSSNDIGE--RIELSDGTYTLTELNSPAGYSI-AEPITFKVEAG 101 (457)
T ss_dssp CEEEEEEEETTBCSSCCCCCEEEEC---------CEEECCSSCE--EEECCSEEEEEEEEECCTTBCC-CCCEEEEEETT
T ss_pred eeEEEEEeccCCCCCccCCcEEEEEeCCCCeeeeeEEEeCCcee--EEeeCCceEEEEEecCCCCcee-ccCEEEEecCC
Confidence 46888888876668999999999987653 111 133444444 44799999999986 679998 48899999998
Q ss_pred cEE
Q 001065 933 ESR 935 (1167)
Q Consensus 933 ~~~ 935 (1167)
+..
T Consensus 102 ~v~ 104 (457)
T 2xi9_A 102 KVY 104 (457)
T ss_dssp EEE
T ss_pred eEE
Confidence 653
No 76
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=94.12 E-value=0.043 Score=51.99 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=45.0
Q ss_pred EEEEEEeccCCccccCCCCCCcceEEEEEeCCC---cEEEEEEeCCCceEE----EccccCceEEEEEEcCCc
Q 001065 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG---DLISSVITSSEGSYL----FKNIIPGKYKLRASHPNL 193 (1167)
Q Consensus 128 IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g---~~i~~ttTd~~G~f~----f~~l~pG~Y~l~~~~~g~ 193 (1167)
|+=.|++.. .|.|.+|+.|+|...++ +.+.+.+||+||+.. =..+.+|.|+|.+....|
T Consensus 6 lstHVLDt~-------~G~PAagv~V~L~~~~~~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~tg~Y 71 (114)
T 2g2n_A 6 LSVHILNQQ-------TGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDY 71 (114)
T ss_dssp EEEEEEETT-------TTEECCSCEEEEEEECSSSEEEEEEEECCTTSEESCCSCSSCCCSEEEEEEECHHHH
T ss_pred eEEEEecCC-------CcCCCCCCEEEEEEeCCCCcEEEEEEecCCCCccccccCCCCCCceEEEEEEEhhHh
Confidence 556677642 57999999999987554 468899999999972 124678999999965554
No 77
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=94.10 E-value=0.092 Score=58.43 Aligned_cols=69 Identities=9% Similarity=0.213 Sum_probs=47.2
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~ 289 (1167)
..+.|+|.+ +|+||+||.|.++..+..-....+.......+........||++|+|.|..+.||.|.+-
T Consensus 134 l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~~RGr~~TD~~G~y~F~TI~Pg~Yp~p 203 (311)
T 1dmh_A 134 LILHGTIFDADGKPLPNAKVEIWHANTKGFYSHFDPTGEQQAFNMRRSIITDENGQYRVRTILPAGYGCP 203 (311)
T ss_dssp EEEEEEEECTTSCBCTTCEEEEEECCTTSCCTTSCTTSCCSTTTTEEEEECCTTSEEEEEEECCCCEECC
T ss_pred EEEEEEEEcCCCCCCCCcEEEEEccCCCcccCCcCCcccCCCCCCeeEEEeCCCceEEEEEEcCCcccCC
Confidence 467899996 599999999999987532111111100000112235678999999999999999999863
No 78
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=94.06 E-value=0.09 Score=54.98 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=47.0
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCC-CeEEEcccCCccEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDAD-GKFMFKSVPCGQYELV 289 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~-G~f~f~~LppG~Y~v~ 289 (1167)
..+.|+|.+ +|+||+||.|.++..+..-....+...+ + +....+...||++ |+|.|..+.||.|...
T Consensus 49 l~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~-~-~f~~rGr~~TD~~~G~~~F~TI~Pg~Y~~~ 117 (200)
T 3t63_A 49 ILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLE-N-AFNSFGRTATTFDAGEWTLHTVKPGVVNNA 117 (200)
T ss_dssp EEEEECEECTTSCBCSSCEEEEEECCTTSCCCCBCCTT-S-SBCSEEEEECCSSCCSEEEEEECCCCEECT
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCCcCCCCCCC-C-CccccceEecCCCCCEEEEEEECCcCcCCC
Confidence 467899996 5999999999999875321111111111 1 1123578899999 9999999999999753
No 79
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=94.06 E-value=0.11 Score=46.04 Aligned_cols=52 Identities=19% Similarity=0.056 Sum_probs=41.8
Q ss_pred EEEEEEeCCCCceeceEEEE---cc-ee----eeEeCCCceEEECcCCCccEEEEEEeccc
Q 001065 328 VGGRVVDENDMGVEGVKILV---DG-HE----RSITDRDGYYKLDQVTSNRYTIEAVKVHY 380 (1167)
Q Consensus 328 V~G~V~d~~G~pl~Ga~V~l---~G-~~----~~~TD~dG~y~~~~L~pG~Y~I~~~~~~y 380 (1167)
+.-+|+|.+|+|++||.|.+ |- .. ...||++|.+.| -.--|+-.|.+.++++
T Consensus 3 ~~v~V~d~~GkPV~gA~Vefe~yNyae~~~~~~~~TD~~G~~s~-~~G~Gd~~v~A~k~G~ 62 (82)
T 3e8v_A 3 GSVLVTDAEGQPVADATVEFKVYNYAEFYTVATKHTDRSGHASL-TAGKGDMLVWASKDGR 62 (82)
T ss_dssp EEEEEECTTSCBCTTCEEEEEEEETTEEEEEEEEECCTTSEEEE-ECCSEEEEEEEEETTE
T ss_pred EEEEEEcCCCCCCCCCEEEEEEEEchheeEEEEEEECCCceEEE-EEcCCceEEEeccCCE
Confidence 34479999999999999988 42 21 148999999999 6777899999988873
No 80
>2xi9_A Ancillary protein 1; cell adhesion, GRAM positive pilus, intramolecular isopeptid internal thioester; 1.90A {Streptococcus pyogenes} PDB: 2xic_A 2xid_A
Probab=94.03 E-value=0.073 Score=62.17 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=40.3
Q ss_pred CCCCcccceEEEEEeCCCcEEEe--EEecCCcEEEeCCCCCccEEE-EEEcCCCcccCCceEEEEEcCC
Q 001065 46 DARLDYSHVTVELRTLDGLVKES--TQCAPNGYYFIPVYDKGSFVI-KVNGPEGWSWNPDKVAVTVDDT 111 (1167)
Q Consensus 46 d~~i~~sgv~v~L~~~~G~~~~~--t~t~~nG~y~~~~l~~G~Y~l-~~~~P~G~~~~p~~~~v~Vd~~ 111 (1167)
|.+-.|+||+++|++.+|+.+.. .+++..+.+ +. |++|+|+| |.++|+||.. .+.+.++|...
T Consensus 36 d~~~~L~GA~f~L~~~~g~~v~e~~w~s~~~~~~-~~-L~~G~YtL~Et~AP~GY~~-a~~I~FtV~~~ 101 (457)
T 2xi9_A 36 DYSKLLEGATLQLTGDNVNSFQARVFSSNDIGER-IE-LSDGTYTLTELNSPAGYSI-AEPITFKVEAG 101 (457)
T ss_dssp BCSSCCCCCEEEEC---------CEEECCSSCEE-EE-CCSEEEEEEEEECCTTBCC-CCCEEEEEETT
T ss_pred CCCCccCCcEEEEEeCCCCeeeeeEEEeCCceeE-Ee-eCCceEEEEEecCCCCcee-ccCEEEEecCC
Confidence 34456899999999988887655 344445554 44 69999999 8899999997 46688887653
No 81
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=93.99 E-value=0.063 Score=57.76 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=50.7
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC--C-----------------CeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCC
Q 001065 947 SATGTITLLSGQPKDGVSVEARSES--K-----------------GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGF 1007 (1167)
Q Consensus 947 s~~G~V~~~~g~p~~gv~v~~~~~~--~-----------------~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~ 1007 (1167)
.+.|+|.+.+|+|++|+.|++---+ + ..++-..||++|.|+++-+.||+ |.+..
T Consensus 80 ~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~-Yp~~~------ 152 (241)
T 2bum_B 80 IVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGP-YPWRN------ 152 (241)
T ss_dssp EEEEEEEETTSCBCCSCEEEEECCCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEECCCC-EEESS------
T ss_pred EEEEEEECCCCCCCCCcEEEEEecCCCceeCCCCCCcccccCCCccceeEEEeCCCceEEEEEecCCc-cccCC------
Confidence 4589999999999999999985211 1 12577899999999999999997 55421
Q ss_pred CCcceeecCCceEEEEecC
Q 001065 1008 GSTKIERASPESVTVKVGS 1026 (1167)
Q Consensus 1008 ~~~~i~~~~p~~~~v~v~~ 1026 (1167)
+ .+.-| |.|+.+.|..
T Consensus 153 ~-~~~~R--paHIH~~V~a 168 (241)
T 2bum_B 153 R-INEWR--PAHIHFSLIA 168 (241)
T ss_dssp S-TTEEE--CSEEEEEEEC
T ss_pred C-CCCCc--CceEEEEEeC
Confidence 0 11123 6788877754
No 82
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Probab=93.98 E-value=0.048 Score=59.03 Aligned_cols=48 Identities=27% Similarity=0.460 Sum_probs=40.9
Q ss_pred eEEEEEEEeCCCCceeceEEEE-----cce---------------eeeEeCCCceEEECcCCCccEEE
Q 001065 326 FSVGGRVVDENDMGVEGVKILV-----DGH---------------ERSITDRDGYYKLDQVTSNRYTI 373 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l-----~G~---------------~~~~TD~dG~y~~~~L~pG~Y~I 373 (1167)
..|.|+|+|.+|+||+||.|.+ +|. -...||++|+|.|.-+.||.|.+
T Consensus 104 l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~RGr~~TD~~G~y~F~TI~Pg~Yp~ 171 (257)
T 3o5u_A 104 MRFTGSVRDTSGTPITGAVIDVWHSTNDGNYSFFSPALPDQYLLRGRVVPAEDGSIEFHSIRPVPYEI 171 (257)
T ss_dssp EEEEEEEECTTCCBCTTCEEEEECCCTTSCCTTSCTTSCSSCTTEEEECCCTTSEEEEEEECCCCEEC
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCCCCCcCCCCCcccCceeEEEeCCCceEEEEEECCCCcCC
Confidence 4589999999999999999998 231 12489999999999999999975
No 83
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=93.82 E-value=0.11 Score=57.00 Aligned_cols=67 Identities=16% Similarity=0.290 Sum_probs=47.1
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~ 289 (1167)
..+.|+|.+ +|+||+||.|.++..+..-........ .+ +....+...||++|+|.|..+.||.|.+-
T Consensus 132 l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~-~~-~~~lRGr~~TD~dG~y~F~TI~Pg~Yp~p 199 (280)
T 3hhy_A 132 LVFSGQVTDLDGNGLAGAKVELWHADNDGYYSQFAPH-LP-EWNLRGTIIADEEGRYEITTIQPAPYQIP 199 (280)
T ss_dssp EEEEEEEECTTSCBCSSCEEEEECCCTTSCCTTSSTT-SC-TTTTEEEEECCTTSEEEEEEECCCCEECC
T ss_pred EEEEEEEECCCCCCCCCcEEEEEecCCCCCCCCCCCC-CC-CCcceEEEEeCCCceEEEEEECCcCcCCC
Confidence 467899996 599999999999986532111111100 11 11235788999999999999999999764
No 84
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ...
Probab=93.68 E-value=0.051 Score=51.65 Aligned_cols=59 Identities=24% Similarity=0.387 Sum_probs=44.4
Q ss_pred EEEEEEeccCCccccCCCCCCcceEEEEEeCC--C--cEEEEEEeCCCceEE----EccccCceEEEEEEcCCc
Q 001065 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G--DLISSVITSSEGSYL----FKNIIPGKYKLRASHPNL 193 (1167)
Q Consensus 128 IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~--g--~~i~~ttTd~~G~f~----f~~l~pG~Y~l~~~~~g~ 193 (1167)
|+=.|++.. .|.|.+|+.|+|+..+ + +.+.+.+||+||+.. -..+.+|.|+|.+....|
T Consensus 3 lstHVLDt~-------~G~PAagv~V~L~~~~~~~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~tg~Y 69 (115)
T 1f86_A 3 LMVKVLDAV-------RGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSY 69 (115)
T ss_dssp EEEEEEETT-------TTEECTTCEEEEEEECTTSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEECHHHH
T ss_pred eeEEEccCC-------CCCcCCCCEEEEEEcCCCCCcEEEEEeecCCCccccCcCCCCCCcceEEEEEEEhhHh
Confidence 455677642 5799999999998742 3 468899999999983 234678999999965544
No 85
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Probab=93.62 E-value=11 Score=41.93 Aligned_cols=199 Identities=16% Similarity=0.139 Sum_probs=93.2
Q ss_pred ecCCceEEEecCCCcceE-Ee--eccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEEe
Q 001065 893 SWAGGSFHFDNLFPGNFY-LR--PLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARS 969 (1167)
Q Consensus 893 T~~~G~~~f~~L~PG~Y~-~~--~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~ 969 (1167)
....-.+.+.+|.||.-| ++ +....-.-.|....+.-.......+.+... ...++.=+=....+.++.+-.|+...
T Consensus 54 ~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~~~p~~l~~~~~-~~~si~l~W~~p~~~~~~~Y~v~~~~ 132 (368)
T 1fnf_A 54 HADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNI-GPDTMRVTWAPPPSIDLTNFLVRYSP 132 (368)
T ss_dssp CTTCCEEECCCCCTTSCEEEEEEEEETTEECCCEEEEECCCCCCCEEEEEESC-CSSCEEEEEECCTTCCCSEEEEEEEE
T ss_pred cCCcCEEEECCCCCCCEEEEEEEEEcCCCccCceeeeecCCCcCCceeEEEEc-CCCeEEEEeeCCCCCCCcEEEEEEEE
Confidence 344567889999999754 44 432221222222211111112233332211 11112111123334567777777765
Q ss_pred CCC--CeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecCcccccceEEEEecCCeEEEEE
Q 001065 970 ESK--GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSG 1047 (1167)
Q Consensus 970 ~~~--~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~~~~~f~~~~~~~~~~i~g 1047 (1167)
.+. ...+.......-.|.|.||.||+.|.+++.+....| ++.|..........--.++... ......|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g-----~s~~~~~~~~~~~~~P~~l~~~---~~~~~sv~l 204 (368)
T 1fnf_A 133 VKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQH-----ESTPLRGRQKTGLDSPTGIDFS---DITANSFTV 204 (368)
T ss_dssp TTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE-----ECCCEEEEEECCCCCCEEEEEE---SCCSSEEEE
T ss_pred CCCCCccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCC-----CCCCeEeeecCCCCCCCccEEE---EccCCEEEE
Confidence 432 223333344566899999999999999999753222 2223222222222222222222 111111221
Q ss_pred EEEecccccccceeEEEEEecCCCCceEEEEeeCCceeEEeccCCCC-cEEEEEEe
Q 001065 1048 HVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1048 ~V~~~~~~~~~~~l~v~l~~~~~~~~v~~~~~~~~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
.=... ......-.|..+..+..........-.....|.+..|.++ .|.+++..
T Consensus 205 ~W~~p--~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A 258 (368)
T 1fnf_A 205 HWIAP--RATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVA 258 (368)
T ss_dssp EEECC--SSCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEE
T ss_pred EEeCC--CCCcCEEEEEEecCCCCCCccEEEeCCCcCEEEECCCCCCCEEEEEEEE
Confidence 12111 1223345566655543222222111234567889999998 58887775
No 86
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa}
Probab=93.52 E-value=0.045 Score=54.41 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=27.7
Q ss_pred ccceeeEEEeCCCCeEEEcccCCccEEEEEE
Q 001065 261 ERKALCHAVSDADGKFMFKSVPCGQYELVPH 291 (1167)
Q Consensus 261 ~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~ 291 (1167)
-...+..+++|++|+|.|++||||+|.|...
T Consensus 84 ~~~y~r~t~cD~~G~F~F~~Lp~G~Yyl~a~ 114 (150)
T 3qec_A 84 RATYVREATTDQNGRFDFDHIPNGTYYISSE 114 (150)
T ss_dssp SGGGCEEEECCTTSEEEEEEECSEEEEEEEE
T ss_pred HhcceeEEEeCCCCcEEECCCCCccEEEEEE
Confidence 3466889999999999999999999999984
No 87
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=93.40 E-value=0.1 Score=57.51 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=46.9
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~ 289 (1167)
..+.|+|.+ +|+||+||.|.++..+..-....+ .... +........||++|+|.|..+.||.|.+-
T Consensus 134 l~v~G~V~D~~G~Pv~~A~VEiWqada~G~Y~~~--~~~~-~~~~rGr~~TD~~G~y~F~TI~Pg~Yp~p 200 (293)
T 1tmx_A 134 CWVEGTVTDTDGNPVPDARIEVWEADDDGFYDVQ--YDDD-RTAARAHLLSGPDGGYAFWAITPTPYPIP 200 (293)
T ss_dssp EEEEEEEEETTSCBCTTCEEEEECCCTTSCCGGG--SSSC-CCCSEEEEECCTTSEEEEEEECCCCEECC
T ss_pred EEEEEEEECCCCCCCCCceeEEEecCCCCcccCC--ccCC-CCCceeEEEeCCCceEEEEEECCCcccCC
Confidence 467899986 599999999999987532111100 0011 12235778999999999999999999864
No 88
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=93.36 E-value=0.21 Score=53.49 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=47.2
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCC-CCCcccc--cceeeEEEeCCCCeEEEcccCCccEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQG-SGNALGE--RKALCHAVSDADGKFMFKSVPCGQYELV 289 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g-~~~~~~~--g~~~~~~~TD~~G~f~f~~LppG~Y~v~ 289 (1167)
..|.|+|.+ +|+||+||.|.++..+..-....+. ....+.+ ....+...||++|+|.|..+.||.|.+-
T Consensus 78 i~l~G~V~D~~G~Pv~~A~VEiWqada~G~Y~~~~d~~~~~~~~~f~~rGr~~TD~~G~y~F~TI~Pg~Yp~p 150 (238)
T 3t63_M 78 IIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPAPWR 150 (238)
T ss_dssp EEEEEEEEETTSCBCTTCEEEEEECCTTSCCSSTTCCCSSCCCTTCCCEEEEECCTTSEEEEEEECCCCEEES
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCCCCCccccccccCCCCcCceeEEEECCCceEEEEEECCcCccCC
Confidence 457899986 5999999999999875322111110 0001111 1235678999999999999999999873
No 89
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=93.33 E-value=0.15 Score=56.17 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=47.1
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELV 289 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~ 289 (1167)
..+.|+|.+ +|+||+||.|.++..+..-....+.. ..+ +....+...||++|+|.|..+.||.|.+-
T Consensus 130 l~l~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~-~~~-~~~lRGr~~TD~~G~y~F~TI~Pg~Yp~p 197 (290)
T 3n9t_A 130 ALVYGRVLDVQGRPVVGAVLDVWQTADNGMYSGQDP-DQP-FGNLRGRYRSDNDGCFAIQTTVPVCYPIP 197 (290)
T ss_dssp EEEEEEEEETTSCBCSSCEEEEECCCTTSCCTTTST-TSC-TTTTEEEEECCTTSEEEEEEECCCCEECC
T ss_pred EEEEEEEECCCCCCCCCCEEEEEccCCCCCcCCCCC-CCC-CCCceeEEEeCCCceEEEEEeCCCCcCCC
Confidence 457899986 59999999999998653211111110 111 11235788999999999999999999864
No 90
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=93.28 E-value=4.7 Score=54.97 Aligned_cols=229 Identities=21% Similarity=0.202 Sum_probs=115.0
Q ss_pred eCcEEEEEEEeccCCccccCCCCCC-cceEEEEEeCCCcEEEEEE--eCCCceEEEccc-cCceEEEEEEcCCc------
Q 001065 124 TGFTLLGRVVGAIGGESCLDKGGGP-SNVNVELLSHSGDLISSVI--TSSEGSYLFKNI-IPGKYKLRASHPNL------ 193 (1167)
Q Consensus 124 ~g~~IsG~V~~~~g~~s~~~~~~pl-aGv~V~L~~~~g~~i~~tt--Td~~G~f~f~~l-~pG~Y~l~~~~~g~------ 193 (1167)
+|-+|.-+++..+. +..|+ .-++|.|.+.+|..+.... ++..+.|.+..- +.|.|+|.+...+.
T Consensus 139 PGqtV~~rvi~~~~------~~~p~~~~~~v~i~dP~g~~i~~~~~~~~~~~~f~L~~~~~~G~w~I~v~~~~~~~~~~~ 212 (1642)
T 3prx_B 139 PGSPVLYRVFSMDH------NTSKMNKTVIVEFQTPEGILVSSNSVDLNFFWPYNLPDLVSLGTWRIVAKYEHSPENYTA 212 (1642)
T ss_dssp TTCEEEEEEEECCC-----------CCCEEEEEECSSCCEEEEEEECTTCCCEEECCSSCCCEEEEEEEEETTEEEEEEE
T ss_pred CCCEEEEEEEEEcC------CCcccCceEEEEEECCCCCEEEEEEecccceEEEEcCCCCCceeEEEEEEeCCCCcEEEE
Confidence 34456666655321 12333 1267788899996665432 224667777655 56999999875442
Q ss_pred eeEe----ecceEEEEccCCeeEeeeeecc-ceEEeeEEEe---CCCceeceEEEEEE-C--CCCcccCCCCCCCccccc
Q 001065 194 SVEV----RGSTEVELGFENGEVDDIFFAP-GYEIRGLVVA---QGNPILGVHIYLYS-D--DVGKVDCPQGSGNALGER 262 (1167)
Q Consensus 194 ~~~~----~~~~~V~v~~~~~~~~~~l~~~-G~~isG~V~~---~g~Pl~Ga~V~L~~-~--~~~~~~c~~g~~~~~~~g 262 (1167)
.+.+ .|+.+|.+...... +.+. +-.+..+|.+ -|+|+.|.....+. . +....-| .
T Consensus 213 ~F~VeeYvlP~FeV~v~~~~~~----~~~~~~~~~~v~V~ArY~yGkPV~G~v~v~fg~~~~~~~~~~~----------~ 278 (1642)
T 3prx_B 213 YFDVRKYVLPSFEVRLQPSEKF----FYIDGNENFHVSITARYLYGEEVEGVAFVLFGVKIDDAKKSIP----------D 278 (1642)
T ss_dssp EEEECSCCCCSEEEEEEESSSE----EETTSCCCEEEEEEEEETTSCBCCEEEEEEEEEEETTEEEECG----------G
T ss_pred EEEEEEEecCcEEEEEecccee----EEecCCCeEEEEEEEEeCCCCceeeeEEEEEEeccCCCccccc----------c
Confidence 1211 23455555432211 1222 3345555554 39999885322221 1 1000000 0
Q ss_pred ceeeEEEeCCCCeEEEccc------CC-----c-cEEEEEEEe-cCC--eE------EEecCceEEEEEeccceeeeeee
Q 001065 263 KALCHAVSDADGKFMFKSV------PC-----G-QYELVPHYK-GEN--TV------FDVSPSLVSMSVRHQHVTVPEKF 321 (1167)
Q Consensus 263 ~~~~~~~TD~~G~f~f~~L------pp-----G-~Y~v~~~~~-~~~--~~------~~~~P~~~~vtV~~~~~~l~~~f 321 (1167)
.......+|.+|.|.|.-- +. | .+.|.+.-. .+. .. ..+.+....+.+... + .|
T Consensus 279 ~l~~~~~~dg~G~~~~~~~~~~~~~~~~~~~~~~~l~V~atV~eE~gg~~~~~~~~~i~i~~~~~~i~f~~~----~-~~ 353 (1642)
T 3prx_B 279 SLTRIPIIDGDGKATLKRDTFRSRFPNLNELVGHTLYASVTVMTESGSDMVVTEQSGIHIVASPYQIHFTKT----P-KY 353 (1642)
T ss_dssp GCEEEEEBTTEEEEEECHHHHHHHCCCGGGTSSEEEEEEEEEEETTSSCEEEEEEEEEEEESCSCEEECTTS----C-SE
T ss_pred ccceeEEecCcEEEEEehhhhcccccccccccceEEEEEEEEEEeCCCCEEEeeeeeEEEEecceEEEEEeC----c-cc
Confidence 0123457899999997521 11 1 233443221 111 11 112222222222110 1 13
Q ss_pred EEec--eEEEEEEEeCCCCceeceEEEE-cceeeeEeCCCceEEEC-cCCC--ccEEEEEEe
Q 001065 322 QVTG--FSVGGRVVDENDMGVEGVKILV-DGHERSITDRDGYYKLD-QVTS--NRYTIEAVK 377 (1167)
Q Consensus 322 ~~~g--~sV~G~V~d~~G~pl~Ga~V~l-~G~~~~~TD~dG~y~~~-~L~p--G~Y~I~~~~ 377 (1167)
-..| +.+.-+|.+++|.|++++.|.+ .+....+||++|...|. +.+. ..+.|+++.
T Consensus 354 ~kpG~p~~~~v~v~~~dg~P~~~~~V~v~~~~~~~tTd~~G~a~f~i~t~~~~~~l~i~~~~ 415 (1642)
T 3prx_B 354 FKPGMPYELTVYVTNPDGSPAAHVPVVSEAFHSMGTTLSDGTAKLILNIPLNAQSLPITVRT 415 (1642)
T ss_dssp ECTTSCEEEEEEEECTTSCBCCSCEEEEGGGTEEEECCTTSEEEEEECCCTTCCCCEEEEEC
T ss_pred cCCCCCEEEEEEEECCCCCCCCCceEEEEeccceeeeCCCceEEEEEECCCCCcEEEEEEEE
Confidence 2334 4455567889999999999998 34444689999975553 3333 357777763
No 91
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=93.20 E-value=1.4 Score=45.71 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=56.3
Q ss_pred eEEEcccCCccEEEEEEEecCCeEEEecCceEEEEEec-cceeeee-------eeEE-eceEEEEEEEeCCCCceeceEE
Q 001065 275 KFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSVRH-QHVTVPE-------KFQV-TGFSVGGRVVDENDMGVEGVKI 345 (1167)
Q Consensus 275 ~f~f~~LppG~Y~v~~~~~~~~~~~~~~P~~~~vtV~~-~~~~l~~-------~f~~-~g~sV~G~V~d~~G~pl~Ga~V 345 (1167)
.|.+..+++|.|+|.+......-.. -....+.|+|.. ....+.. .+.. ....|++...|.+| .|..+.|
T Consensus 52 s~~~~~~~~G~htlta~A~D~aGn~-s~s~~v~vtV~~~~~Ptv~itsP~~g~~~~~~~~vtl~~~AsD~~g-~V~~Ve~ 129 (190)
T 3pdd_A 52 TAKITGAAVGAYNLKAVAVLSDGRR-IESPVTPVLVKVIVKPTVKLTAPKSNVVAYGNEFLKITATASDSDG-KISRVDF 129 (190)
T ss_dssp EEEECSCCSEEEEEEEEEEETTSCE-EECCCEEEEEECCCCCEEEEEECCTTCCCBTTSEEEEEEEEECSSS-CEEEEEE
T ss_pred EEEeccCCCccEEEEEEEEECCCCE-eeecceeEEeccCCCCceeecCCCCCcEEecCCeEEEEEEEECCCC-cEEEEEE
Confidence 5566678899999988532111000 112234555542 1111110 0100 01356666676655 6999999
Q ss_pred EEcceeeeE-eCCCceEEECcCCCccEEEEEEec
Q 001065 346 LVDGHERSI-TDRDGYYKLDQVTSNRYTIEAVKV 378 (1167)
Q Consensus 346 ~l~G~~~~~-TD~dG~y~~~~L~pG~Y~I~~~~~ 378 (1167)
++||..+.+ +.+.-.|.+.. .+|.|+|++++-
T Consensus 130 ~~dg~~v~t~t~~~y~~~~~~-~~G~~tl~a~A~ 162 (190)
T 3pdd_A 130 LVDGEVIGSDREAPYEYEWKA-VEGNHEISVIAY 162 (190)
T ss_dssp EETTEEEEEECSSSEEEEEEC-CSEEEEEEEEEE
T ss_pred EECCEEEecccCCCEEEEEec-CCeeEEEEEEEE
Confidence 999988753 22333455544 889999998873
No 92
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=93.20 E-value=0.13 Score=54.12 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=45.0
Q ss_pred eEEeeEEEe-CCCceeceEEEEEECCCCcccCCCCCC-Ccc--cccceeeEEEe-CCCCeEEEcccCCccEEE
Q 001065 221 YEIRGLVVA-QGNPILGVHIYLYSDDVGKVDCPQGSG-NAL--GERKALCHAVS-DADGKFMFKSVPCGQYEL 288 (1167)
Q Consensus 221 ~~isG~V~~-~g~Pl~Ga~V~L~~~~~~~~~c~~g~~-~~~--~~g~~~~~~~T-D~~G~f~f~~LppG~Y~v 288 (1167)
..|.|+|.+ +|+||+||.|.++..+..-....+... ..+ .+........| |++|+|+|..+.||.|..
T Consensus 53 l~v~G~V~D~~G~Pv~~A~VeiWqada~G~Y~~~~~~~~~~~~~~f~~rGr~~T~d~~G~y~F~TI~Pg~yp~ 125 (209)
T 2bum_A 53 IRLEGQVFDGLGLPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFNTIKPGAVPG 125 (209)
T ss_dssp EEEEECEECTTSCBCSSCEEEEECCCTTSCCSSTTCCSCSCCCTTCCCEEEEECCTTTCCEEEEEECCCCCBC
T ss_pred EEEEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCccceeEEeeeCCCcEEEEEEEccCcccC
Confidence 368899996 599999999999986532111111000 000 01122456777 999999999999999864
No 93
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=93.17 E-value=0.044 Score=52.47 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=46.5
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEE-----EccccCceEEEEEEcCCc
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYL-----FKNIIPGKYKLRASHPNL 193 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~-----f~~l~pG~Y~l~~~~~g~ 193 (1167)
.|+=.|++.. .|.|.+|+.|+|+..+.+.+.+.+||+||+.. =..+.+|.|+|.+....|
T Consensus 10 ~lstHVLDt~-------~G~PAagv~V~L~~~~~~~l~~~~Tn~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Y 74 (121)
T 2h0e_A 10 KLTTHILDLT-------CGKPAANVKIGLKRLGESIMKEVYTNNDGRVDVPLLAGEELMSGEYVMEFHAGDY 74 (121)
T ss_dssp EEECCEEETT-------TTEECTTCEEEEEETTSCCCEEEECCTTSSCSSCSEEGGGCCSEEEEEEECHHHH
T ss_pred CeeEEEecCC-------CcCCCCCCEEEEEECCceEEEEEecCCCCCccCCcCCCCCcCceEEEEEEEhHHh
Confidence 3566677642 57999999999997656678999999999972 235779999999865555
No 94
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=93.15 E-value=5.3 Score=41.21 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=77.9
Q ss_pred eEEEEEEEeCCCCceeceEEEEcceeeeEe-CCCceEEECcCCCccEEEEEEecccc---cc-ceeeEEEcCCcceeceE
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHERSIT-DRDGYYKLDQVTSNRYTIEAVKVHYK---FN-KLKEYMVLPNMASIADI 400 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~~~~T-D~dG~y~~~~L~pG~Y~I~~~~~~y~---~~-~~~~v~v~p~~~~i~dI 400 (1167)
..|.+... +++ ++..++|++||..+... ...-.|.+..+.+|.|+|++++-+.. .. ....+.+.++.+....|
T Consensus 19 vtv~~~As-~d~-~V~~Ve~~~dg~~v~~~t~~~ys~~~~~~~~G~htlta~A~D~aGn~s~s~~v~vtV~~~~~Ptv~i 96 (190)
T 3pdd_A 19 INISATVK-SKT-PVSKVEFYNGDTLISSDTTAPYTAKITGAAVGAYNLKAVAVLSDGRRIESPVTPVLVKVIVKPTVKL 96 (190)
T ss_dssp EEEEEEEC-CSS-CEEEEEEEETTEEEEEECSSSEEEEECSCCSEEEEEEEEEEETTSCEEECCCEEEEEECCCCCEEEE
T ss_pred EEEEEEEe-CCC-CEEEEEEEECCEEEccccCCceEEEeccCCCccEEEEEEEEECCCCEeeecceeEEeccCCCCceee
Confidence 45666666 344 89999999999887532 22335667778899999998874321 11 11134444322211122
Q ss_pred EEE----------eeEEEEEEEEcCCcccEEEEEEcCCCcccceeeeecCCeEEEEE--EcCeeEEEEEEeecCCCCCCe
Q 001065 401 KAI----------SYDICGVVRTVGSGNKVKVALTHGPDKVKPQVKQTDNNGNFCFE--VPPGEYRLSAMAATPESSSGI 468 (1167)
Q Consensus 401 ~~~----------~~~V~G~V~~~~~~~~a~VtL~~~~~~~~~~~~~Td~~G~f~f~--L~pG~Y~v~~~~~~~~~~~G~ 468 (1167)
... .+.|++...+.++ .-.+|.+..+.. ..-++..+.|.+. .++|.|+|++...+. .|-
T Consensus 97 tsP~~g~~~~~~~~vtl~~~AsD~~g-~V~~Ve~~~dg~-----~v~t~t~~~y~~~~~~~~G~~tl~a~A~D~---aGn 167 (190)
T 3pdd_A 97 TAPKSNVVAYGNEFLKITATASDSDG-KISRVDFLVDGE-----VIGSDREAPYEYEWKAVEGNHEISVIAYDD---DDA 167 (190)
T ss_dssp EECCTTCCCBTTSEEEEEEEEECSSS-CEEEEEEEETTE-----EEEEECSSSEEEEEECCSEEEEEEEEEEET---TCC
T ss_pred cCCCCCcEEecCCeEEEEEEEECCCC-cEEEEEEEECCE-----EEecccCCCEEEEEecCCeeEEEEEEEEEC---CCC
Confidence 211 1244454443222 245555543211 2234455667766 588999999988754 332
Q ss_pred eeeCceEEEEE
Q 001065 469 LFLPPYADVVV 479 (1167)
Q Consensus 469 ~~~p~~~~V~V 479 (1167)
.-....+.|+|
T Consensus 168 ~s~s~~vtvtv 178 (190)
T 3pdd_A 168 ASTPDSVKIFV 178 (190)
T ss_dssp BCCCEEEEEEE
T ss_pred EEecceEEEEE
Confidence 22344455665
No 95
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Probab=93.14 E-value=2.4 Score=47.27 Aligned_cols=210 Identities=14% Similarity=0.139 Sum_probs=105.8
Q ss_pred CCcEEE--eCCCCCccEEEEEEcCCCcccCCceEEEEEcC----CCcCC-cceeeEEEeCcEEEEEEEec--cCCccccC
Q 001065 73 PNGYYF--IPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDD----TGCNG-NEDINFRFTGFTLLGRVVGA--IGGESCLD 143 (1167)
Q Consensus 73 ~nG~y~--~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~----~~~s~-~~dinf~~~g~~IsG~V~~~--~g~~s~~~ 143 (1167)
.+|.|. +--..+|.|.|.+.-- |.+..-....+.|.. ..|.. +..+.-...|....=+|... .|+. +
T Consensus 63 ~dG~y~v~y~p~~~G~~~i~v~~~-~~~i~gsPf~~~v~~~~d~~~~~~~G~gl~~~~~g~~~~f~V~~~D~~G~~-~-- 138 (311)
T 1wlh_A 63 GDGTYDVEFEPKEAGDYVINLTLD-GDNVNGFPKTVTVKPAPSAEHSYAEGEGLVKVFDNAPAEFTIFAVDTKGVA-R-- 138 (311)
T ss_dssp SSSEEEEEECCCSCSEEEEEEEES-SSBCTTCSEEEEEECCBCTTTCCEESGGGTCEESSSCEEEEEECBBSSSSB-C--
T ss_pred CCCEEEEEEEccCccceEEEEEEC-CEECCCCceEEEEccccccceeEEeccccceeecCCCEEEEEEecCCCCCE-E--
Confidence 378877 3334799999988863 355443334444432 22211 00011112232223233322 1110 0
Q ss_pred CCCCCcceEEEEEeCCCcEE-EEEEeCCCceEEEccc--cCceEEEEEEcCCceeEeecceEEEEccCCeeEeeeeeccc
Q 001065 144 KGGGPSNVNVELLSHSGDLI-SSVITSSEGSYLFKNI--IPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPG 220 (1167)
Q Consensus 144 ~~~plaGv~V~L~~~~g~~i-~~ttTd~~G~f~f~~l--~pG~Y~l~~~~~g~~~~~~~~~~V~v~~~~~~~~~~l~~~G 220 (1167)
..+-..+++.+...+|..+ ...+-..+|.|.+.-. .+|.|.|.+...+..+. .....+.+..+... ....+
T Consensus 139 -~~g~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~p~~~G~y~i~V~~~g~~I~-gSPF~v~V~~~~d~--~~v~~-- 212 (311)
T 1wlh_A 139 -TDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRGNPIK-NMPIDVKCIEGANG--EDSSF-- 212 (311)
T ss_dssp -SSCCCCEEEEEECTTSCBCCCEEEEETTTEEEEEECCCSSEEEEEEEEETTEECT-TCSCEEEEECCCCG--GGCEE--
T ss_pred -ecCCCcEEEEEECCCCCeeeEEEEECCCCEEEEEEECCCCEEEEEEEEECCEECC-CCCEEEEECCCCCC--CceEE--
Confidence 1233457788887777332 3445567899876644 57999999988776543 11134444322100 00000
Q ss_pred eEEeeEEE---eCCCce----eceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccC--CccEEEEEE
Q 001065 221 YEIRGLVV---AQGNPI----LGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVP--CGQYELVPH 291 (1167)
Q Consensus 221 ~~isG~V~---~~g~Pl----~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp--pG~Y~v~~~ 291 (1167)
....=+|. ..|+|+ ....+.+...+ +...+..+.+.+|.|.+.=.| +|.|.|.+.
T Consensus 213 ~~~~f~V~~~D~~gn~~~~G~~~l~v~i~~p~----------------g~~~~~v~d~~~G~y~v~y~p~~~G~y~i~V~ 276 (311)
T 1wlh_A 213 GSFTFTVAAKNKKGEVKTYGGDKFEVSITGPA----------------EEITLDAIDNQDGTYTAAYSLVGNGRFSTGVK 276 (311)
T ss_dssp EEEEEEEECBCTTSSBCSSCCSCEEEEEESCC----------------SEEEEEEEECSSSEEEEEEEEECSEEEEEEEE
T ss_pred EeEEEEEEEeccCCCeeecCCCcEEEEEECCC----------------CCceeEEEECCCCEEEEEEECCCCEeEEEEEE
Confidence 01111232 236554 23556655432 123456677899997655444 899999998
Q ss_pred EecCCeEEEecCceEEEEEec
Q 001065 292 YKGENTVFDVSPSLVSMSVRH 312 (1167)
Q Consensus 292 ~~~~~~~~~~~P~~~~vtV~~ 312 (1167)
+.+.+ +..+...+.|..
T Consensus 277 ~~g~~----I~gsPf~v~v~~ 293 (311)
T 1wlh_A 277 LNGKH----IEGSPFKQVLGN 293 (311)
T ss_dssp ETTEE----CTTCSEEEEESC
T ss_pred ECCEE----CCCCCEEEEEcC
Confidence 76643 344445555543
No 96
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1
Probab=93.06 E-value=0.062 Score=54.39 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=25.5
Q ss_pred EEEEEEeCCCceEEEccccCceEEEEEE
Q 001065 162 LISSVITSSEGSYLFKNIIPGKYKLRAS 189 (1167)
Q Consensus 162 ~i~~ttTd~~G~f~f~~l~pG~Y~l~~~ 189 (1167)
.+.++++|++|+|.|.+|+||+|.|.+.
T Consensus 107 y~r~t~~D~~G~F~F~~Lp~G~Yyl~a~ 134 (170)
T 1xpn_A 107 YVREATTDQNGRFDFDHIPNGTYYISSE 134 (170)
T ss_dssp HCEEEEECSSCEEEECSCCSEEEEEEEE
T ss_pred ceeEEEecCCCcEEecCCCCccEEEEEE
Confidence 4689999999999999999999999873
No 97
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=93.02 E-value=0.061 Score=51.38 Aligned_cols=59 Identities=19% Similarity=0.367 Sum_probs=44.4
Q ss_pred EEEEEEeccCCccccCCCCCCcceEEEEEeCC--C--cEEEEEEeCCCceEE----EccccCceEEEEEEcCCc
Q 001065 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSHS--G--DLISSVITSSEGSYL----FKNIIPGKYKLRASHPNL 193 (1167)
Q Consensus 128 IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~--g--~~i~~ttTd~~G~f~----f~~l~pG~Y~l~~~~~g~ 193 (1167)
|+=.|++.. .|.|.+|+.|+|+..+ + +.+.+.+||+||+.. =..+.+|.|+|.+....|
T Consensus 4 lstHVLDt~-------~G~PAagv~V~L~~~~~~~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~tg~Y 70 (119)
T 1oo2_A 4 LMVKILDAV-------KGTPAGSVALKVSQKTADGGWTQIATGVTDATGEIHNLITEQQFPAGVYRVEFDTKAY 70 (119)
T ss_dssp EEEEEEETT-------TTEECTTCEEEEEEECTTSCEEEEEEEECCTTSCCTTCSCGGGCCSEEEEEEECHHHH
T ss_pred eeEEEecCC-------CcCCCCCCEEEEEEeCCCCCcEEEEEEecCCCCcccCcCCCCCCCceEEEEEEEhHHh
Confidence 455677642 5799999999998642 3 468899999999972 224678999999965554
No 98
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=92.90 E-value=0.083 Score=51.01 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=45.2
Q ss_pred EEEEEEeccCCccccCCCCCCcceEEEEEeC--CC--cEEEEEEeCCCceEE----EccccCceEEEEEEcCCc
Q 001065 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSH--SG--DLISSVITSSEGSYL----FKNIIPGKYKLRASHPNL 193 (1167)
Q Consensus 128 IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~--~g--~~i~~ttTd~~G~f~----f~~l~pG~Y~l~~~~~g~ 193 (1167)
|+=.|++.. .|.|.+|+.|+|+.. ++ +.+.+.+||+||+.. -..+.+|.|+|++....|
T Consensus 12 LStHVLDt~-------~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~L~F~tg~Y 78 (127)
T 2h4e_A 12 LMVKVLDAV-------RGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSY 78 (127)
T ss_dssp EEEEEEETT-------TTEECTTCEEEEEEECTTSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEECHHHH
T ss_pred EEEEEecCC-------CcCCCCCCEEEEEEeCCCCCeEEEEEeecCCCccccCcCCCCCccceEEEEEEEhHHh
Confidence 566787752 579999999999864 33 468899999999983 234678999999965544
No 99
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ...
Probab=92.65 E-value=0.29 Score=46.51 Aligned_cols=94 Identities=15% Similarity=0.265 Sum_probs=70.2
Q ss_pred EEEEEEEccCCCCCcccceEEEEECC---ccee--eceeecCCceEE----EecCCCcceEEeeccCcc-------ccCC
Q 001065 859 QISVRIYSKDDAGEPIPSVLLSLSGD---DGYR--NNSVSWAGGSFH----FDNLFPGNFYLRPLLKEY-------AFSP 922 (1167)
Q Consensus 859 ~i~~~v~~~~~~~~pl~gvllslsg~---~~~r--~n~~T~~~G~~~----f~~L~PG~Y~~~~~~key-------~~~p 922 (1167)
.|+.+|.|. ..|.|-+|+.+.|... +..+ ...+||+||++. -..+.+|.|-|+.-..+| .|=|
T Consensus 2 ~lstHVLDt-~~G~PAagv~V~L~~~~~~~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~tg~Yf~~~g~~~F~p 80 (115)
T 1f86_A 2 PLMVKVLDA-VRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPFHE 80 (115)
T ss_dssp CEEEEEEET-TTTEECTTCEEEEEEECTTSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEECHHHHHHHTTCCCSEE
T ss_pred CeeEEEccC-CCCCcCCCCEEEEEEcCCCCCcEEEEEeecCCCccccCcCCCCCCcceEEEEEEEhhHhHhhcCCCCCcc
Confidence 477888887 5699999999988642 2232 357899999983 235789999998776665 2222
Q ss_pred -CceeEEecCC--cEEEEEEEEEeeeEEEEEEEE
Q 001065 923 -PAQAIELGSG--ESREVIFQATRVAYSATGTIT 953 (1167)
Q Consensus 923 -~~~~i~v~~G--~~~~v~~~~~r~~~s~~G~V~ 953 (1167)
-+..|.|++. ++-+|-+-..+.+||-+.-|.
T Consensus 81 ~V~i~F~i~d~~~~HYHVPLLlSP~~YST~~~v~ 114 (115)
T 1f86_A 81 HAEVVFTANDSGPRRYTIAALLSPYSYSTMAVVT 114 (115)
T ss_dssp EEEEEEEESTTSCCEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEEEECCCCCCCEEEeEEecCCcceEEEEec
Confidence 3466889874 788999999999999887765
No 100
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=92.49 E-value=0.38 Score=42.62 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=44.2
Q ss_pred EEEEEeccCCccccCCCCCCcceEEEE--EeCCC-cEEEEEEeCCCceEEEccccCceEEEEEEcCCcee
Q 001065 129 LGRVVGAIGGESCLDKGGGPSNVNVEL--LSHSG-DLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSV 195 (1167)
Q Consensus 129 sG~V~~~~g~~s~~~~~~plaGv~V~L--~~~~g-~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~ 195 (1167)
.=+|++. +|.|++||+|++ ++-.- -.++...||++|.++|. .--|+-.|.+.+.||.-
T Consensus 4 ~v~V~d~--------~GkPV~gA~Vefe~yNyae~~~~~~~~TD~~G~~s~~-~G~Gd~~v~A~k~G~~g 64 (82)
T 3e8v_A 4 SVLVTDA--------EGQPVADATVEFKVYNYAEFYTVATKHTDRSGHASLT-AGKGDMLVWASKDGRFG 64 (82)
T ss_dssp EEEEECT--------TSCBCTTCEEEEEEEETTEEEEEEEEECCTTSEEEEE-CCSEEEEEEEEETTEEE
T ss_pred EEEEEcC--------CCCCCCCCEEEEEEEEchheeEEEEEEECCCceEEEE-EcCCceEEEeccCCEEE
Confidence 4456664 369999977765 55422 34678899999999999 77789999999999853
No 101
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp}
Probab=92.49 E-value=0.14 Score=48.45 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=66.2
Q ss_pred eEEEEEEEccCCCCCcccceEEEEECCcceeeceeecCCceEEE---ecCCCcceEEeeccCcc-------ccCC-Ccee
Q 001065 858 SQISVRIYSKDDAGEPIPSVLLSLSGDDGYRNNSVSWAGGSFHF---DNLFPGNFYLRPLLKEY-------AFSP-PAQA 926 (1167)
Q Consensus 858 ~~i~~~v~~~~~~~~pl~gvllslsg~~~~r~n~~T~~~G~~~f---~~L~PG~Y~~~~~~key-------~~~p-~~~~ 926 (1167)
+.|+.+|.|. ..|.|-+||.++|...+..-...+||+||++.. ..|.||.|-|+.-..+| .|=| -+..
T Consensus 10 ~~lstHVLDt-~~G~PAagv~V~L~~~~~~l~~~~Tn~DGR~~~l~~~~~~~G~Y~L~F~tg~Yf~~~g~~~F~p~V~v~ 88 (116)
T 3qva_A 10 STLSTHILDI-STGTPAEGVTVSLSREGETLANLVTNAQGRIATFSAAPLPAGRYCLTAETGAWFARAGRESVFTRAQID 88 (116)
T ss_dssp BCEEEEEEET-TTTEECTTCEEEEEETTEEEEEEECCTTSEECCSCSSCBCSSEEEEEECHHHHHHHTTCCCSEEEEEEE
T ss_pred CCeeeEEeec-CCCcCCCCCEEEEEEccEeEEEeccCCCCCccccccccCCCceEEEEEeHHHHHhhcCCCcceeeEEEE
Confidence 5688999987 569999999999987642234578999999853 34678999998765444 2333 3566
Q ss_pred EEecC--CcEEEEEEEEEeeeEEEE
Q 001065 927 IELGS--GESREVIFQATRVAYSAT 949 (1167)
Q Consensus 927 i~v~~--G~~~~v~~~~~r~~~s~~ 949 (1167)
|.|++ +|+-+|-+-..+.+||.|
T Consensus 89 F~i~d~~~~HYHVPLLlSP~gYSTY 113 (116)
T 3qva_A 89 FVIGEAAEDHFHLPFLIAPGGWSTY 113 (116)
T ss_dssp EEC-----CCEECCEEEETTEEEEE
T ss_pred EEeCCCCCCCEEEeEEecCCccccc
Confidence 78887 688888888888888865
No 102
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=92.48 E-value=4.9 Score=49.39 Aligned_cols=212 Identities=15% Similarity=0.126 Sum_probs=102.8
Q ss_pred eEEEEEeCCCcEEE-EEEeCCCceEEEc-----cccCceEEEEEEcCC-----c--eeEe----ecceEEEEccCCeeEe
Q 001065 151 VNVELLSHSGDLIS-SVITSSEGSYLFK-----NIIPGKYKLRASHPN-----L--SVEV----RGSTEVELGFENGEVD 213 (1167)
Q Consensus 151 v~V~L~~~~g~~i~-~ttTd~~G~f~f~-----~l~pG~Y~l~~~~~g-----~--~~~~----~~~~~V~v~~~~~~~~ 213 (1167)
+.|.+.+.+|..+. ...+..+|.|.++ +.++|.|+|.+...+ + .+.+ .++.+|++........
T Consensus 155 ~~v~i~dp~g~~v~~~~~~~~~G~~~~~f~Lp~~~~~G~w~i~v~~~~~~~~~~s~~F~VeeyvlP~feV~i~~~~~~~~ 234 (656)
T 4fxk_A 155 ITVMVENSHGLRVRKKEVYMPSSIFQDDFVIPDISEPGTWKISARFSDGLESNSSTQFEVKKYVLPNFEVKITPGKPYIL 234 (656)
T ss_dssp EEEEEECTTCCEEEEEEECCTTSEEEEEEECCTTCCSEEEEEEEEESSCTTCCCCEEEEECCCCCCSEEEEEEESSSSCC
T ss_pred ceEEEECCCCcEEeeeEEecCCceEEEEecCCCCCCCcCEEEEEEEcCCCceeEEEEEEEEEEecCcEEEEEecCcceee
Confidence 67888899996554 3445677888765 345699999986532 1 1222 2445555543221100
Q ss_pred eeeeccceEEeeEEEe---CCCceec-eEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcc---------
Q 001065 214 DIFFAPGYEIRGLVVA---QGNPILG-VHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKS--------- 280 (1167)
Q Consensus 214 ~~l~~~G~~isG~V~~---~g~Pl~G-a~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~--------- 280 (1167)
.....+-.+..+|.. -|+|+.| +.+......... ............++.+|...+.-
T Consensus 235 -~~~~~~~~~~v~v~a~Y~~G~PV~G~~~v~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 304 (656)
T 4fxk_A 235 -TVPGHLDEMQLDIQARYIYGKPVQGVAYVRFGLLDEDG---------KKTFFRGLESQTKLVNGQSHISLSKAEFQDAL 304 (656)
T ss_dssp -EETTEECCCEEEEEEEETTCCCCCSEEEEEEEECCTTS---------CCEEEEEEEEEEECSSSEEEEECCHHHHHHHH
T ss_pred -eccCCCCeEEEEEEEEEccCccEeeEEEEEEEEecCCC---------CccccccccccEEeecCEEEEEECHHHhhhhh
Confidence 000112234445553 4999998 555544322100 00000112345677788776641
Q ss_pred ---------cCCccEEEEEEEe---cCCeE------EEecCceEEEEEeccceeeeeeeEEec--eEEEEEEEeCCCCce
Q 001065 281 ---------VPCGQYELVPHYK---GENTV------FDVSPSLVSMSVRHQHVTVPEKFQVTG--FSVGGRVVDENDMGV 340 (1167)
Q Consensus 281 ---------LppG~Y~v~~~~~---~~~~~------~~~~P~~~~vtV~~~~~~l~~~f~~~g--~sV~G~V~d~~G~pl 340 (1167)
..+..+.+.+.-. +.... +.+.+....+...... . +-..| +.+.-.+.+++|+|+
T Consensus 305 ~~~~~~~~~~~~~~l~v~a~V~e~~g~~~~~~~~~~i~~~~~~~~i~~~~~~----~-~~kpg~p~~~~v~v~~~dG~P~ 379 (656)
T 4fxk_A 305 EKLNMGITDLQGLRLYVAAAIIESPGGEMEEAELTSWYFVSSPFSLDLSKTK----R-HLVPGAPFLLQALVREMSGSPA 379 (656)
T ss_dssp HHTSCCSSTTTTTCEECEEEEECCSSSCCCEEECCCEECCSSSSEEECCSSC----S-CCCTTSBCCEEEEEECSSSSCC
T ss_pred cccccccccccCceEEEEEEEEECCCCeEEEEEEEEEEEecccEEEEEeccC----C-eEcCCCcEEEEEEEECCCCCCC
Confidence 1122344444311 11110 1111111122211110 0 11122 344556778999999
Q ss_pred eceEEEEcce--------e----eeEeCCCceEEECcCCC---ccEEEEEEe
Q 001065 341 EGVKILVDGH--------E----RSITDRDGYYKLDQVTS---NRYTIEAVK 377 (1167)
Q Consensus 341 ~Ga~V~l~G~--------~----~~~TD~dG~y~~~~L~p---G~Y~I~~~~ 377 (1167)
++..|.+.-. . ...+|.+|.+.+.-..| |.|.+++..
T Consensus 380 ~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~ 431 (656)
T 4fxk_A 380 SGIPVKVSATVSSPGSVPEVQDIQQNTDGSGQVSIPIIIPQTISELQLSVSA 431 (656)
T ss_dssp CSCCEEEEEEEECGGGCEEEEEEEECCCTTSEEEECCBCCTTCSEEEEEEEE
T ss_pred CCceEEEEEEEeccceEEeeeEEEEEecCCceEEEEEeCCCCCcEEEEEEEe
Confidence 9988876111 1 13577888887753322 456666654
No 103
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Probab=92.39 E-value=11 Score=38.49 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=69.7
Q ss_pred CccCccEEEEEeCCC--CeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecCcccccceEE
Q 001065 958 QPKDGVSVEARSESK--GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFL 1035 (1167)
Q Consensus 958 ~p~~gv~v~~~~~~~--~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~~~~~f~ 1035 (1167)
.++.+-.|+....+. ...........-.|.|.||.|++.|.+++.+....| .+.|..+.......-..++.+.
T Consensus 49 ~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g-----~s~~~~~~t~~~~p~P~~l~~~ 123 (203)
T 2gee_A 49 STIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGG-----ESTPTTLTQQTAVPPPTDLRFT 123 (203)
T ss_dssp SSCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEESSSC-----BCCCEEEEEECCCCCCEEEEEE
T ss_pred CCccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEEEEEEEeCCC-----ccccEeeeecCCCcCCCceEEE
Confidence 355566666554432 223334445667899999999999999999754322 1223222222111122333333
Q ss_pred EEecCCeEEEEEEEEecccccccceeEEEEEecCCCCceEEEEeeC-CceeEEeccCCCC-cEEEEEEe
Q 001065 1036 VFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLP-MSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1036 ~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~~v~~~~~~~-~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
... ...+.|+ =.... ...+....|..+..+....... ..++ ....|.+..|.++ .|.+++..
T Consensus 124 ~~~-~~sv~l~--W~~p~-~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A 187 (203)
T 2gee_A 124 NIG-PDTMRVT--WAPPP-SIDLTNFLVRYSPVKNEEDVAE-LSISPSDNAVVLTNLLPGTEYVVSVSS 187 (203)
T ss_dssp EEE-TTEEEEE--EECCS-SCCCSEEEEEEEETTCGGGCEE-EEECTTCCEEEECSCCTTCEEEEEEEE
T ss_pred EcC-CCEEEEE--EcCCC-CCCccEEEEEEEECCCCCccEE-EEcCCCcCEEEECCCCCCCEEEEEEEE
Confidence 221 1222121 11111 1123455666665443322222 3333 4567899999998 58888876
No 104
>2x9z_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.30A {Streptococcus pneumoniae}
Probab=92.38 E-value=0.19 Score=55.06 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=46.7
Q ss_pred eeEEEEEEEccCC-CCCcccceE--EEEECCcce---eeceeecCCceEEEecC-CCcceEEeec-cCccccC
Q 001065 857 LSQISVRIYSKDD-AGEPIPSVL--LSLSGDDGY---RNNSVSWAGGSFHFDNL-FPGNFYLRPL-LKEYAFS 921 (1167)
Q Consensus 857 l~~i~~~v~~~~~-~~~pl~gvl--lslsg~~~~---r~n~~T~~~G~~~f~~L-~PG~Y~~~~~-~key~~~ 921 (1167)
-|+|.+++.+.++ ...+|+||. |.|-..++. .....++++|.+.|.+| .+|+|+|++. +.+|.+.
T Consensus 156 ~~~~~~~K~d~~~~~~~~L~GA~~~F~l~~~~~~~~~~~~~~t~~~g~~~~~gLd~~g~Y~l~Et~a~GY~~~ 228 (262)
T 2x9z_A 156 NGDLTLTKTWVDATGAPIPAGAEATFDLVNAQAGKVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSIKGYSAD 228 (262)
T ss_dssp TSCEEEEEEEECTTSCBCCCCSCEEEEEEETTTCCEEEEEEECTTCSEEEECSCCTTSCEEEEECCBTTBEEE
T ss_pred cccEEEEEEcCCCCcccCcCCcEEEEEEEECCCCcEEEEEEecCCceEEEEeCCCCCCCEEEEEEEeCCcccc
Confidence 3677788887642 134899954 999765432 11122799999999999 7999999985 4788854
No 105
>2x9z_A RRGB, cell WALL surface anchor family protein; cell adhesion; 1.30A {Streptococcus pneumoniae}
Probab=92.38 E-value=0.35 Score=52.92 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=42.3
Q ss_pred EEEeCCC---ceeceE--EEEEECCCCcccCCCCCCCcccccceeeEEE-eCCCCeEEEccc-CCccEEEEEEEecCCeE
Q 001065 226 LVVAQGN---PILGVH--IYLYSDDVGKVDCPQGSGNALGERKALCHAV-SDADGKFMFKSV-PCGQYELVPHYKGENTV 298 (1167)
Q Consensus 226 ~V~~~g~---Pl~Ga~--V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~-TD~~G~f~f~~L-ppG~Y~v~~~~~~~~~~ 298 (1167)
++..+|. +|+||. |.|+..... .++.... ||++|.+.|.+| .+|+|+|.+... +++.
T Consensus 163 K~d~~~~~~~~L~GA~~~F~l~~~~~~---------------~~~~~~~~t~~~g~~~~~gLd~~g~Y~l~Et~a-~GY~ 226 (262)
T 2x9z_A 163 KTWVDATGAPIPAGAEATFDLVNAQAG---------------KVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSI-KGYS 226 (262)
T ss_dssp EEEECTTSCBCCCCSCEEEEEEETTTC---------------CEEEEEEECTTCSEEEECSCCTTSCEEEEECCB-TTBE
T ss_pred EEcCCCCcccCcCCcEEEEEEEECCCC---------------cEEEEEEecCCceEEEEeCCCCCCCEEEEEEEe-CCcc
Confidence 4555554 899976 999986321 2233333 899999999999 799999999766 6654
Q ss_pred EE
Q 001065 299 FD 300 (1167)
Q Consensus 299 ~~ 300 (1167)
..
T Consensus 227 ~~ 228 (262)
T 2x9z_A 227 AD 228 (262)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 106
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=92.33 E-value=0.054 Score=52.89 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=46.0
Q ss_pred EEEEEEEeccCCccccCCCCCCcceEEEEEeCCC-----cEEEEEEeCCCceEE--E--ccccCceEEEEEEcCCc
Q 001065 127 TLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSG-----DLISSVITSSEGSYL--F--KNIIPGKYKLRASHPNL 193 (1167)
Q Consensus 127 ~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g-----~~i~~ttTd~~G~f~--f--~~l~pG~Y~l~~~~~g~ 193 (1167)
.|+-.|++.. .|.|.+|+.|+|+..++ ..+.+.+||+||+.. + ..+.+|.|+|.+....|
T Consensus 27 ~LTtHVLDt~-------~G~PAagv~V~L~~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~L~F~tg~Y 95 (138)
T 3iwv_A 27 PLSTHVLNIA-------QGVPGANMTIVLHRLDPVSSAWNILTTGITNDDGRCPGLITKENFIAGVYKMRFETGKY 95 (138)
T ss_dssp CEECCEEETT-------TTEECTTCEEEEEEECSSSCCEEEEEEEECCTTSCCTTSSCTTTCCSEEEEEEECHHHH
T ss_pred CceEEEeecC-------CccCCCCCEEEEEEECCCCCCcEEEEEEecCCCCCcCCccCcccCCCceEEEEEehHHH
Confidence 4677787752 57899999999986542 457899999999985 2 24678999999966555
No 107
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A*
Probab=92.32 E-value=0.14 Score=55.39 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=41.7
Q ss_pred EEEEEEEcCCCCccCccEEEEEeCC---------------CCeeeEEeecCcceEEEcCCCCCCE
Q 001065 947 SATGTITLLSGQPKDGVSVEARSES---------------KGYYEETVTDTSGSYRLRGLHPDTT 996 (1167)
Q Consensus 947 s~~G~V~~~~g~p~~gv~v~~~~~~---------------~~~~~~~~Td~~G~~~i~gL~pg~~ 996 (1167)
.+.|+|.+.+|+|++|+.|++---+ ...++-..||++|.|+++-+.||+|
T Consensus 105 ~l~G~V~D~~G~Pv~~A~VeiWqada~G~Ys~~~~~~~~~~~~RGr~~TD~~G~y~F~TI~Pg~Y 169 (257)
T 3o5u_A 105 RFTGSVRDTSGTPITGAVIDVWHSTNDGNYSFFSPALPDQYLLRGRVVPAEDGSIEFHSIRPVPY 169 (257)
T ss_dssp EEEEEEECTTCCBCTTCEEEEECCCTTSCCTTSCTTSCSSCTTEEEECCCTTSEEEEEEECCCCE
T ss_pred EEEEEEECCCCCCCCCcEEEEEecCCCCCCCCcCCCCCcccCceeEEEeCCCceEEEEEECCCCc
Confidence 3589999999999999999985111 1257788999999999999999984
No 108
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=91.95 E-value=0.13 Score=50.96 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=44.6
Q ss_pred EEEEEEeccCCccccCCCCCCcceEEEEEeC--CC--cEEEEEEeCCCceEEE----ccccCceEEEEEEcCCc
Q 001065 128 LLGRVVGAIGGESCLDKGGGPSNVNVELLSH--SG--DLISSVITSSEGSYLF----KNIIPGKYKLRASHPNL 193 (1167)
Q Consensus 128 IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~--~g--~~i~~ttTd~~G~f~f----~~l~pG~Y~l~~~~~g~ 193 (1167)
|+=.|++.. +|.|.+|+.|+|+.. ++ +.+.+.+||+|||..- ..+.+|.|+|.+.-..|
T Consensus 32 LTtHVLDt~-------~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~ll~~~~~~~G~Y~L~F~tg~Y 98 (147)
T 4ank_A 32 LMVKVLDAV-------RGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSY 98 (147)
T ss_dssp EEEEEEETT-------TTEECCSCEEEEEEECTTSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEECHHHH
T ss_pred eEEEEEeCC-------CCcCCCCCEEEEEEECCCCCeEEEEEEEeCCCCCCCCCCCccccCCceEEEEEEHHHH
Confidence 666787752 479999999999854 33 5688999999999852 23567999999865444
No 109
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A
Probab=91.82 E-value=0.45 Score=45.88 Aligned_cols=98 Identities=15% Similarity=0.242 Sum_probs=73.0
Q ss_pred eeEEEEEEEccCCCCCcccceEEEEECC--c-cee--eceeecCCceEE----EecCCCcceEEeeccCcc-------cc
Q 001065 857 LSQISVRIYSKDDAGEPIPSVLLSLSGD--D-GYR--NNSVSWAGGSFH----FDNLFPGNFYLRPLLKEY-------AF 920 (1167)
Q Consensus 857 l~~i~~~v~~~~~~~~pl~gvllslsg~--~-~~r--~n~~T~~~G~~~----f~~L~PG~Y~~~~~~key-------~~ 920 (1167)
.+.|+.+|.|. ..|.|-+||.+.|... + .++ ...+||+||++. -..|.+|.|-|+.-..+| .|
T Consensus 9 ~~~LStHVLDt-~~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~L~F~tg~Yf~~~g~~~F 87 (127)
T 2h4e_A 9 KXPLMVKVLDA-VRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPF 87 (127)
T ss_dssp -CCEEEEEEET-TTTEECTTCEEEEEEECTTSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEECHHHHHHHTTCCCS
T ss_pred cCCEEEEEecC-CCcCCCCCCEEEEEEeCCCCCeEEEEEeecCCCccccCcCCCCCccceEEEEEEEhHHhHhhcCCCCC
Confidence 46788999987 5699999999998642 2 232 357899999983 235789999999776665 22
Q ss_pred CC-CceeEEecCC--cEEEEEEEEEeeeEEEEEEEEcC
Q 001065 921 SP-PAQAIELGSG--ESREVIFQATRVAYSATGTITLL 955 (1167)
Q Consensus 921 ~p-~~~~i~v~~G--~~~~v~~~~~r~~~s~~G~V~~~ 955 (1167)
=| -+..|.|++. +.-+|=+-..+.+||-+.-|.+.
T Consensus 88 ~p~V~I~F~i~d~~~~HYHVPLLlSP~gYST~~~v~~~ 125 (127)
T 2h4e_A 88 HEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNP 125 (127)
T ss_dssp EEEEEEEEEESTTSCCEEEEEEEEETTEEEEEEEEEC-
T ss_pred cceEEEEEEECCCCCCCEEEeEEecCCcceeeEEeccC
Confidence 22 3566889874 78899999999999998888753
No 110
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Probab=91.61 E-value=12 Score=37.29 Aligned_cols=133 Identities=19% Similarity=0.191 Sum_probs=71.6
Q ss_pred ccCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecCcccccceEEEEe
Q 001065 959 PKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFE 1038 (1167)
Q Consensus 959 p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~~~~~f~~~~ 1038 (1167)
++.+-.|+....++...........-.|.|.||.||+.|.+++.+..+. ..+.|....+.....--.++.+....
T Consensus 33 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~-----~~s~~~~~~~~t~p~~P~~l~~~~~~ 107 (186)
T 1qr4_A 33 KFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGR-----HKSKPTTIKGSTVVGSPKGISFSDIT 107 (186)
T ss_dssp CCSEEEEEEECTTCCEEEEEECTTCSEEEEESCCSSCEEEEEEEEESSS-----CBCCCEEEEEECCCCCCSCEEEESCC
T ss_pred CccEEEEEEEeCCCCeeEEECCCCCCEEEECCCCCCCEEEEEEEEEcCC-----ccCCCEEEEEECCCCCCCccEEEEeC
Confidence 4555566655433333333444455689999999999999999985431 22334444444333333444333221
Q ss_pred cCCeEEEEEEEEecccccccceeEEEEEecCCCCceEEEEeeCCceeEEeccCCCC-cEEEEEEe
Q 001065 1039 QPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1039 ~~~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~~v~~~~~~~~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
...+.|+ =... ........|+.+..+........+. .....|.+..|.++ .|.+++..
T Consensus 108 -~~sv~l~--W~~p--~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A 166 (186)
T 1qr4_A 108 -ENSATVS--WTPP--RSRVDSYRVSYVPITGGTPNVVTVD-GSKTRTKLVKLVPGVDYNVNIIS 166 (186)
T ss_dssp -SSCEEEE--ECCC--SSCCSEEEEEEEETTCCCCEEEEEE-TTCCEEEECSCCSSCEEEEEEEE
T ss_pred -CCEEEEE--EECC--CCcccEEEEEEEeCCCCCceEEEcC-CCcCEEEEcCCCCCCEEEEEEEE
Confidence 1222222 1111 1223455666666543222222122 34567899999999 69988886
No 111
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=91.39 E-value=15 Score=45.13 Aligned_cols=209 Identities=14% Similarity=0.127 Sum_probs=106.9
Q ss_pred ceEEEEEeCCCcEEEeEEecC--CcEEEeCCC-CCccEEEEEEcCCCc-----cc-----CCceEEEEEcCCCcCCccee
Q 001065 53 HVTVELRTLDGLVKESTQCAP--NGYYFIPVY-DKGSFVIKVNGPEGW-----SW-----NPDKVAVTVDDTGCNGNEDI 119 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t~t~~--nG~y~~~~l-~~G~Y~l~~~~P~G~-----~~-----~p~~~~v~Vd~~~~s~~~di 119 (1167)
-+++.|.|++|+.+.+....+ .+.|.+|.- ..|.|.|++....+- .| -|-..+|.++... .
T Consensus 138 ~~~v~i~dP~g~~i~~~~~~~~~~~~f~Lp~~~~~G~w~i~v~~~~~~~~~~~~F~Veeyv~P~feV~~~~~~-----~- 211 (627)
T 3hrz_A 138 TVIVEFQTPEGILVSSNSVDLNFFWPYNLPDLVSLGTWRIVAKYEHSPENYTAYFDVRKYVLPSFEVRLQPSE-----K- 211 (627)
T ss_dssp CEEEEEECTTCCEEEEEEEBTTBCCCEECCSSCCCEEEEEEEEETTCSCCEEEEEEECCCCCCSEEEEEEESS-----S-
T ss_pred cEEEEEECCCCCEEEEEEeccceEEEEECCCCCCCeeEEEEEEECCCceEEEEEEEEeEEECCcEEEEEecCc-----c-
Confidence 478999999999887654433 456666543 469999998764321 12 1233344443210 0
Q ss_pred eEEEe-CcEEEEEEEeccCCccccCCCCCCcc-eEEEE--EeCCCc------EEEEEEeCCCceEEEccc----------
Q 001065 120 NFRFT-GFTLLGRVVGAIGGESCLDKGGGPSN-VNVEL--LSHSGD------LISSVITSSEGSYLFKNI---------- 179 (1167)
Q Consensus 120 nf~~~-g~~IsG~V~~~~g~~s~~~~~~plaG-v~V~L--~~~~g~------~i~~ttTd~~G~f~f~~l---------- 179 (1167)
-+.+. +-.+..+|....= -|.|+.| |.|.+ ...+.. .......|..|.|.|.--
T Consensus 212 ~~~~~~~~~~~~~v~a~y~------~G~Pv~G~v~v~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~l~~~~~~~~~~~~~ 285 (627)
T 3hrz_A 212 FFYIDGNENFHVSITARYL------YGEEVEGVAFVLFGVKIDDAKKSIPDSLTRIPIIDGDGKATLKRDTFRSRFPNLN 285 (627)
T ss_dssp EEETTCCCCEEEEEEEEET------TSCBCCEEEEEEEEEEETTEEEECGGGCEEEEEBTTEEEEEECHHHHHHHCCCGG
T ss_pred eEEecCCCEEEEEEEEEEC------CCCEeccEEEEEEEEccCCceeeccchheeEEecCCeEEEEEEHHHhhhhhcchh
Confidence 01111 2223333322110 2578887 44433 121111 112344677777876521
Q ss_pred --cCceEEEEEE---cCCceeEeecceEEEEccCCeeE----eeeeeccceEEeeEEE---eCCCceeceEEEEEECCCC
Q 001065 180 --IPGKYKLRAS---HPNLSVEVRGSTEVELGFENGEV----DDIFFAPGYEIRGLVV---AQGNPILGVHIYLYSDDVG 247 (1167)
Q Consensus 180 --~pG~Y~l~~~---~~g~~~~~~~~~~V~v~~~~~~~----~~~l~~~G~~isG~V~---~~g~Pl~Ga~V~L~~~~~~ 247 (1167)
....+.|.++ ..|-.........+.+......+ .+.+..+|....|+|. .+|.|++++.|.+...
T Consensus 286 ~~~~~~l~v~a~V~~e~gt~~~~~~~~~i~i~~~~~~i~f~~~~~~~kpG~p~~~~v~v~~~dg~P~~~~~V~v~~~--- 362 (627)
T 3hrz_A 286 ELVGHTLYASVTVMTESGSDMVVTEQSGIHIVASPYQIHFTKTPKYFKPGMPYELTVYVTNPDGSPAAHVPVVSEAF--- 362 (627)
T ss_dssp GGTTCEEEEEEEEEETTSSCEEEEEEEEEEEESSSCEEECTTSCSEECTTSCEEEEEEEECTTSCBCTTCEEEEGGG---
T ss_pred hhcCcEEEEEEEEEEecCCeEEEcccceEEEEeecEEEEEEeccccccCCCcEEEEEEEECCCCCcCCCceEEEEcC---
Confidence 1123445442 22322211112234443333322 1234556766777765 3699999998877432
Q ss_pred cccCCCCCCCcccccceeeEEEeCCCCeEEEcc-cCC--ccEEEEEEEe
Q 001065 248 KVDCPQGSGNALGERKALCHAVSDADGKFMFKS-VPC--GQYELVPHYK 293 (1167)
Q Consensus 248 ~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~-Lpp--G~Y~v~~~~~ 293 (1167)
....+||++|...|.= .+. +.+.|.+.+.
T Consensus 363 -----------------~~~~~td~~G~a~f~i~t~~~~~~l~i~~~~~ 394 (627)
T 3hrz_A 363 -----------------HSMGTTLSDGTAKLILNIPLNAQSLPITVRTN 394 (627)
T ss_dssp -----------------TEEEECCTTSEEEEEECCCTTCSEEEEEEEEC
T ss_pred -----------------cceeEECCCCeEEEEEECCCCCcEEEEEEEeC
Confidence 1468899999877752 222 3567776543
No 112
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A
Probab=91.38 E-value=0.46 Score=44.97 Aligned_cols=91 Identities=20% Similarity=0.338 Sum_probs=67.2
Q ss_pred eEEEEEEEccCCCCCcccceEEEEECCc--cee--eceeecCCceEE----EecCCCcceEEeeccCcc-------ccCC
Q 001065 858 SQISVRIYSKDDAGEPIPSVLLSLSGDD--GYR--NNSVSWAGGSFH----FDNLFPGNFYLRPLLKEY-------AFSP 922 (1167)
Q Consensus 858 ~~i~~~v~~~~~~~~pl~gvllslsg~~--~~r--~n~~T~~~G~~~----f~~L~PG~Y~~~~~~key-------~~~p 922 (1167)
+.|+.+|.|. ..|.|-+||.+.|...+ ..+ ...+||+||++. =..+.+|.|-|+.-..+| .|=|
T Consensus 4 ~~lstHVLDt-~~G~PAagv~V~L~~~~~~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~tg~Yf~~~~~~~F~p 82 (114)
T 2g2n_A 4 NILSVHILNQ-QTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLESFFP 82 (114)
T ss_dssp CCEEEEEEET-TTTEECCSCEEEEEEECSSSEEEEEEEECCTTSEESCCSCSSCCCSEEEEEEECHHHHHHHTTCCCSCS
T ss_pred CCeEEEEecC-CCcCCCCCCEEEEEEeCCCCcEEEEEEecCCCCccccccCCCCCCceEEEEEEEhhHhHhhcCCCCCcc
Confidence 5688899987 56999999999986532 222 357899999982 235788999988765554 2333
Q ss_pred -CceeEEecC-CcEEEEEEEEEeeeEEEE
Q 001065 923 -PAQAIELGS-GESREVIFQATRVAYSAT 949 (1167)
Q Consensus 923 -~~~~i~v~~-G~~~~v~~~~~r~~~s~~ 949 (1167)
-+..|.|++ +++-+|-+-..+.+||.|
T Consensus 83 ~V~i~F~i~d~~~HYHVPLLlSP~~YSTY 111 (114)
T 2g2n_A 83 EIPVEFHINKVNEHYHVPLLLSQYGYSTY 111 (114)
T ss_dssp CEEEEEEESSTTSCEEEEEEEETTEEEEE
T ss_pred eEEEEEEECCCCCCeEEeEEecCCccccc
Confidence 456688886 588889888888888865
No 113
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=90.97 E-value=9.7 Score=39.77 Aligned_cols=134 Identities=17% Similarity=0.226 Sum_probs=79.8
Q ss_pred ceEEEEEeCCCcEEEeEEecC-CcEEE--eCCCCCccEEEEEEcCCCcccCCceEEEEEcCCC-cCCcceeeEEEeCcEE
Q 001065 53 HVTVELRTLDGLVKESTQCAP-NGYYF--IPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTG-CNGNEDINFRFTGFTL 128 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t~t~~-nG~y~--~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~~~-~s~~~dinf~~~g~~I 128 (1167)
.+++.+..++|..+.....+. ||.|. +-...+|.|.|.+.-- |....-....+.|.... ++. ......-|.|
T Consensus 45 ~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~p~~~G~~~i~V~~~-g~~i~gSPf~v~v~~~~~~~~---~~~~~~~f~V 120 (212)
T 1qfh_A 45 PFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLR-GNPIKNMPIDVKCIEGANGED---SSFGSFTFTV 120 (212)
T ss_dssp CEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEET-TEECBTCSEEEEEECCCCGGG---CEEEEEEEEE
T ss_pred eEEEEEECCCCCEeeeEEEECCCcEEEEEEECcCcEEEEEEEEEC-CEecCCCcceEEEccCCCCCc---eEEEEEEEEE
Confidence 678888888886555555555 89888 4444899999998864 34444344556664421 111 1111111222
Q ss_pred EEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEc--cccCceEEEEEEcCCceeE
Q 001065 129 LGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFK--NIIPGKYKLRASHPNLSVE 196 (1167)
Q Consensus 129 sG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~--~l~pG~Y~l~~~~~g~~~~ 196 (1167)
. ..+..|+ . ...+...+++++...+|......+...+|.|.+. ...+|.|.|.+...+..+.
T Consensus 121 ~--~~D~~G~-~---~~~G~~~l~v~i~~p~g~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g~~I~ 184 (212)
T 1qfh_A 121 A--AKNKKGE-V---KTYGGDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIE 184 (212)
T ss_dssp E--CBCTTSS-B---CSSCCCCEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEEETTEECB
T ss_pred E--EeccCCC-E---eecCCCcEEEEEECCCCceeeEEEECCCCEEEEEEEcCCCEEEEEEEEECCEECC
Confidence 1 1121121 0 1245667888998887743345567889977654 4468999999988776654
No 114
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Probab=90.81 E-value=6.8 Score=39.07 Aligned_cols=110 Identities=18% Similarity=0.132 Sum_probs=57.2
Q ss_pred cCCceEEEecCCCcceE-Ee--eccCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEEeC
Q 001065 894 WAGGSFHFDNLFPGNFY-LR--PLLKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSE 970 (1167)
Q Consensus 894 ~~~G~~~f~~L~PG~Y~-~~--~~~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~~ 970 (1167)
...-.+.+.+|.||.-| ++ +.-..-.-.|....+....+.-..+.+.... ..++.=+=...+| ++.+-.|+....
T Consensus 55 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~~~s~~~~~~~~t~p~~P~~l~~~~~~-~~sv~l~W~~p~~-~i~~Y~v~~~~~ 132 (186)
T 1qr4_A 55 VDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDIT-ENSATVSWTPPRS-RVDSYRVSYVPI 132 (186)
T ss_dssp TTCSEEEEESCCSSCEEEEEEEEESSSCBCCCEEEEEECCCCCCSCEEEESCC-SSCEEEEECCCSS-CCSEEEEEEEET
T ss_pred CCCCEEEECCCCCCCEEEEEEEEEcCCccCCCEEEEEECCCCCCCccEEEEeC-CCEEEEEEECCCC-cccEEEEEEEeC
Confidence 34567899999999844 44 4322222222222222222222233222110 1111101112222 466777766654
Q ss_pred C-CCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 971 S-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 971 ~-~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
+ ............-.|.|.||.||+.|.+++.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~ 168 (186)
T 1qr4_A 133 TGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVK 168 (186)
T ss_dssp TCCCCEEEEEETTCCEEEECSCCSSCEEEEEEEEEE
T ss_pred CCCCceEEEcCCCcCEEEEcCCCCCCEEEEEEEEEc
Confidence 3 2233334445667899999999999999999753
No 115
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A*
Probab=90.78 E-value=0.35 Score=46.15 Aligned_cols=96 Identities=20% Similarity=0.302 Sum_probs=71.5
Q ss_pred eEEEEEEEccCCCCCcccceEEEEECC---ccee--eceeecCCceEE----EecCCCcceEEeeccCcc-------ccC
Q 001065 858 SQISVRIYSKDDAGEPIPSVLLSLSGD---DGYR--NNSVSWAGGSFH----FDNLFPGNFYLRPLLKEY-------AFS 921 (1167)
Q Consensus 858 ~~i~~~v~~~~~~~~pl~gvllslsg~---~~~r--~n~~T~~~G~~~----f~~L~PG~Y~~~~~~key-------~~~ 921 (1167)
+.|+.+|.|. ..|.|-+|+.+.|... +..+ ...+||+||++. =..|.+|.|-|+.-..+| .|=
T Consensus 2 ~~lstHVLDt-~~G~PAagv~V~L~~~~~~~~~~~l~~~~Tn~DGR~~~l~~~~~~~~G~Y~l~F~tg~Yf~~~g~~~F~ 80 (119)
T 1oo2_A 2 CPLMVKILDA-VKGTPAGSVALKVSQKTADGGWTQIATGVTDATGEIHNLITEQQFPAGVYRVEFDTKAYWTNQGSTPFH 80 (119)
T ss_dssp CSEEEEEEET-TTTEECTTCEEEEEEECTTSCEEEEEEEECCTTSCCTTCSCGGGCCSEEEEEEECHHHHHHHTTCCCSE
T ss_pred CceeEEEecC-CCcCCCCCCEEEEEEeCCCCCcEEEEEEecCCCCcccCcCCCCCCCceEEEEEEEhHHhHhhcCCCCCc
Confidence 4578899987 5699999999998642 2232 357899999983 235889999998766655 222
Q ss_pred C-CceeEEecCC--cEEEEEEEEEeeeEEEEEEEEc
Q 001065 922 P-PAQAIELGSG--ESREVIFQATRVAYSATGTITL 954 (1167)
Q Consensus 922 p-~~~~i~v~~G--~~~~v~~~~~r~~~s~~G~V~~ 954 (1167)
| -+..|.|++. ++-+|-+-..+.+||-+.-|.+
T Consensus 81 p~V~i~F~i~d~~~~HYHVPLLlSP~~YST~~~v~~ 116 (119)
T 1oo2_A 81 EVAEVVFDAHPEGHGHYTLALLLSPFSYTTTAVVSS 116 (119)
T ss_dssp EEEEEEEEECCSSSCCEEEEEEEETTEEEEEEEECC
T ss_pred ceEEEEEEECCCCCCCEEEeEEecCCcceeeEEecc
Confidence 2 3466889874 7889999999999998877754
No 116
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Probab=90.38 E-value=21 Score=37.98 Aligned_cols=185 Identities=17% Similarity=0.166 Sum_probs=90.0
Q ss_pred EeCCCceEEeCCCCCCceEEEE--EcCCCeEEeee-------C---CceeEEE--eeeEEEEEEEccCCCCCcccceEEE
Q 001065 815 STGADGSFIGGPLYDDITYNVE--ASKPGYYLRQV-------G---PNSFSCQ--KLSQISVRIYSKDDAGEPIPSVLLS 880 (1167)
Q Consensus 815 ~Td~~G~f~~~~L~~~~~y~i~--a~k~gy~~~~~-------~---~~~f~~~--~l~~i~~~v~~~~~~~~pl~gvlls 880 (1167)
+....-.|.+..|.++..|.+. |.... ..... . |..+... .-..|.+.-... ..++.+-.+.
T Consensus 63 ~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~-g~s~~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~~p---~~~i~~Y~v~ 138 (283)
T 1tdq_A 63 LQPPLSQYSVQALRPGSRYEVSISAVRGT-NESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNS---EAEAQEYKVV 138 (283)
T ss_dssp ECTTCSEEEECSCCTTCEEEEEEEEEETT-EECCCEEEEEECCCCCCEEEEEEEECSSCEEEEEECC---SSCCSEEEEE
T ss_pred eCCCCCEEEecCCCCCCEEEEEEEEECCC-CCCCCeeEEEECCCCCCCceEEEecCCCeEEEEecCC---CCCccEEEEE
Confidence 3456678999999988777655 43221 11110 0 1222222 223334433322 1345555555
Q ss_pred EECCcc--eeeceeecC---CceEEEecCCCcc-eEEeecc--CccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEE
Q 001065 881 LSGDDG--YRNNSVSWA---GGSFHFDNLFPGN-FYLRPLL--KEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTI 952 (1167)
Q Consensus 881 lsg~~~--~r~n~~T~~---~G~~~f~~L~PG~-Y~~~~~~--key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V 952 (1167)
....++ .+.-.+... .-.+.+.+|.||. |.++-.+ ..-.-.|....+.-....-..+.+..... .++.=+=
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~~~~~t~~~~P~~l~~~~~~~-~sv~l~W 217 (283)
T 1tdq_A 139 YSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSE-TSISLIW 217 (283)
T ss_dssp EEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEEEECS-SCEEEEE
T ss_pred EEeCCCCcceEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcceEEEecCCCCCCCccEEeEecC-CEEEEEE
Confidence 443222 112123333 5689999999998 5555332 21111121111111122223333332111 1111111
Q ss_pred EcCCCCccCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 953 TLLSGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 953 ~~~~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
...+ .++.+-.|+....++...+.......-.|.|.||.||+.|.+++.+..
T Consensus 218 ~~p~-~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~ 269 (283)
T 1tdq_A 218 TKAS-GPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAER 269 (283)
T ss_dssp ECCC-SCCSEEEEEEECSSSCCEEEEEESSCSEEEECCCCTTCCEEEEEEEEE
T ss_pred eCCC-CcccEEEEEEEcCCCCeeEEEeCCCccEEEECCCCCCCEEEEEEEEEc
Confidence 2223 346666777665443333434445556899999999999999999753
No 117
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=89.20 E-value=0.32 Score=48.18 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=41.8
Q ss_pred EEEEEEeC-CCCceeceEEEE-----ccee--e--eEeCCCceEEE----CcCCCccEEEEEEeccc
Q 001065 328 VGGRVVDE-NDMGVEGVKILV-----DGHE--R--SITDRDGYYKL----DQVTSNRYTIEAVKVHY 380 (1167)
Q Consensus 328 V~G~V~d~-~G~pl~Ga~V~l-----~G~~--~--~~TD~dG~y~~----~~L~pG~Y~I~~~~~~y 380 (1167)
|+=.|+|. .|.|.+|+.|.| +|+. + ++||+||+..- +.+.+|.|+|.+....|
T Consensus 32 LTtHVLDt~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~ll~~~~~~~G~Y~L~F~tg~Y 98 (147)
T 4ank_A 32 LMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSY 98 (147)
T ss_dssp EEEEEEETTTTEECCSCEEEEEEECTTSCEEEEEEEECCTTSEECCSCCTTTCCSEEEEEEECHHHH
T ss_pred eEEEEEeCCCCcCCCCCEEEEEEECCCCCeEEEEEEEeCCCCCCCCCCCccccCCceEEEEEEHHHH
Confidence 67789996 899999999998 3332 2 58999999742 34578999999988776
No 118
>1d2o_A Collagen adhesin, CNA; beta sandwich, IGG, IGSF, structural protein; 2.00A {Staphylococcus aureus} SCOP: b.3.5.1 b.3.5.1
Probab=88.62 E-value=11 Score=38.92 Aligned_cols=127 Identities=15% Similarity=0.220 Sum_probs=74.1
Q ss_pred cceEEEEEeCCCcEEEeE-EecC-CcEEEeCCCC---Cc---cEEEEEEcCCCcccCCceEEEEEcCCCcCCcceeeEEE
Q 001065 52 SHVTVELRTLDGLVKEST-QCAP-NGYYFIPVYD---KG---SFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRF 123 (1167)
Q Consensus 52 sgv~v~L~~~~G~~~~~t-~t~~-nG~y~~~~l~---~G---~Y~l~~~~P~G~~~~p~~~~v~Vd~~~~s~~~dinf~~ 123 (1167)
+.|+|+|+- +|..+.+- .+.+ +-.|.|..|+ .| .|+|+....+||.- .+++ .+|.-..
T Consensus 23 ~~i~v~L~~-~G~~~~~~~l~~~~~W~~~F~~Lp~y~~G~~i~YtV~E~~v~gY~~-------~i~G------~~ITNt~ 88 (187)
T 1d2o_A 23 EKVSVNLLA-NGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKDYTT-------DING------TTITNKY 88 (187)
T ss_dssp SEEEEEEEE-TTEEEEEEEEEGGGTTEEEEEEEESEETTEECCEEEEECCCTTEEE-------EEET------TEEEEEE
T ss_pred ceEEEEEEE-CCeEeeeEEEecCCCcEEEECCCcccCCCCEEEEEEEeCCCCCcEE-------eecc------EEEEccc
Confidence 579999984 67665443 3444 3456655444 45 59998877778752 2333 1232222
Q ss_pred eC--cEEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEE---eCCCceEEEccccC---c---eEEEEEE--c
Q 001065 124 TG--FTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVI---TSSEGSYLFKNIIP---G---KYKLRAS--H 190 (1167)
Q Consensus 124 ~g--~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~tt---Td~~G~f~f~~l~p---G---~Y~l~~~--~ 190 (1167)
.. ..|.++-.-.+++. ..+..+.-++|+|+. +|..+.... .+.+..|.|.+|+- | .|+|.+. .
T Consensus 89 ~P~~~~i~V~K~W~d~~~---~~~~rP~~I~v~L~~-dG~~~g~~~~l~~~n~W~~tf~~Lp~~~~G~~i~YtV~E~~~~ 164 (187)
T 1d2o_A 89 TPGETSATVTKNWDDNNN---QDGKRPTEIKVELYQ-DGKATGKTAILNESNNWTHTWTGLDEKAKGQQVKYTVEELTKV 164 (187)
T ss_dssp CTTEEEEEEEEEEESSTT---SSSCCCSCEEEEEEE-TTEEEEEEEEESGGGTTEEEEEEEESEETTEECCEEEEECSCC
T ss_pred cCccccceeeEEEcCCCC---ccCCCCceEEEEEEe-CCeEeceEEEEecCCceEEEEcCCCccCCCCEEEEEEEEeCcC
Confidence 22 23444333221211 123456789999997 575554322 34567899999986 3 6999885 4
Q ss_pred CCceeE
Q 001065 191 PNLSVE 196 (1167)
Q Consensus 191 ~g~~~~ 196 (1167)
+||...
T Consensus 165 ~GY~~~ 170 (187)
T 1d2o_A 165 KGYTTH 170 (187)
T ss_dssp TTEEEE
T ss_pred CCcEEE
Confidence 677654
No 119
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A*
Probab=88.22 E-value=0.51 Score=45.12 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=41.0
Q ss_pred EeeEEEe--CCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEE-----EcccCCccEEEEEE
Q 001065 223 IRGLVVA--QGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFM-----FKSVPCGQYELVPH 291 (1167)
Q Consensus 223 isG~V~~--~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~-----f~~LppG~Y~v~~~ 291 (1167)
|+=.|.+ .|.|.+|+.|.|+..+ ...+.+.+||+|||.. =..+.+|.|+|.+.
T Consensus 11 lstHVLDt~~G~PAagv~V~L~~~~----------------~~~l~~~~Tn~DGR~~~~~~~~~~~~~G~Y~l~F~ 70 (121)
T 2h0e_A 11 LTTHILDLTCGKPAANVKIGLKRLG----------------ESIMKEVYTNNDGRVDVPLLAGEELMSGEYVMEFH 70 (121)
T ss_dssp EECCEEETTTTEECTTCEEEEEETT----------------SCCCEEEECCTTSSCSSCSEEGGGCCSEEEEEEEC
T ss_pred eeEEEecCCCcCCCCCCEEEEEECC----------------ceEEEEEecCCCCCccCCcCCCCCcCceEEEEEEE
Confidence 5545665 4999999999999852 1347899999999972 23577999999984
No 120
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain, structural protein; 2.80A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Probab=88.06 E-value=10 Score=42.09 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=75.7
Q ss_pred cceEEEEEeCCCcEEEeEEec-CCcEEE--eCCCCCccEEEEEEcCCCcccCCceEEEEEcCCCcCCcceeeEEEeCcEE
Q 001065 52 SHVTVELRTLDGLVKESTQCA-PNGYYF--IPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRFTGFTL 128 (1167)
Q Consensus 52 sgv~v~L~~~~G~~~~~t~t~-~nG~y~--~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~~~~s~~~dinf~~~g~~I 128 (1167)
..+++.+.+++|..+....++ .||.|. +-...+|.|.|.++-- |-...-....+.|....... .+... ..
T Consensus 143 ~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~p~~~G~y~i~V~~~-g~~I~gSPF~v~V~~~~d~~--~v~~~----~~ 215 (311)
T 1wlh_A 143 DPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLR-GNPIKNMPIDVKCIEGANGE--DSSFG----SF 215 (311)
T ss_dssp CCEEEEEECTTSCBCCCEEEEETTTEEEEEECCCSSEEEEEEEEET-TEECTTCSCEEEEECCCCGG--GCEEE----EE
T ss_pred CcEEEEEECCCCCeeeEEEEECCCCEEEEEEECCCCEEEEEEEEEC-CEECCCCCEEEEECCCCCCC--ceEEE----eE
Confidence 357888888888644444444 389887 4445899999988854 23333333445553321000 11111 11
Q ss_pred EEEEE--eccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEc--cccCceEEEEEEcCCceeE
Q 001065 129 LGRVV--GAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFK--NIIPGKYKLRASHPNLSVE 196 (1167)
Q Consensus 129 sG~V~--~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~--~l~pG~Y~l~~~~~g~~~~ 196 (1167)
.=+|. +..|+ .+ ..+.....+++...+|.+....+...+|.|.+. ...+|.|.|.+...+..+.
T Consensus 216 ~f~V~~~D~~gn-~~---~~G~~~l~v~i~~p~g~~~~~v~d~~~G~y~v~y~p~~~G~y~i~V~~~g~~I~ 283 (311)
T 1wlh_A 216 TFTVAAKNKKGE-VK---TYGGDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIE 283 (311)
T ss_dssp EEEEECBCTTSS-BC---SSCCSCEEEEEESCCSEEEEEEEECSSSEEEEEEEEECSEEEEEEEEETTEECT
T ss_pred EEEEEEeccCCC-ee---ecCCCcEEEEEECCCCCceeEEEECCCCEEEEEEECCCCEeEEEEEEECCEECC
Confidence 11222 22110 00 034456888888877743345567789997544 4468999999988776543
No 121
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=87.98 E-value=1.4 Score=48.43 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=43.8
Q ss_pred CCCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcCCceeE
Q 001065 145 GGGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHPNLSVE 196 (1167)
Q Consensus 145 ~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~g~~~~ 196 (1167)
..-++++.|.|. ..|..+....||+.|.|.|..|++|.|+|.+.+.|| ..
T Consensus 207 ~~~~~~~~vpl~-~~~~~va~~~~d~~G~f~~~~l~~G~y~v~v~a~g~-p~ 256 (274)
T 1ti6_B 207 GDCFEGAKVVLK-SGGKEVASAETNFFGEFKFDALDNGEYTVEIDADGK-SY 256 (274)
T ss_dssp TEECTTCEEEEE-ETTEEEEEEECCTTSEEEEEEECSEEEEEEEEETTE-EE
T ss_pred cccccCCEEEEE-cCCcEEEEEeecCcCcEEEeccCCcceEEEEecCCC-Cc
Confidence 456778899998 447778899999999999999999999999999999 55
No 122
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=87.94 E-value=21 Score=36.63 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=75.9
Q ss_pred cccceEEEEEeCCCcEEEeEEec-CCcEEE--eCCCCCccEEEEEEcCCCcccCCceEEEEEcC---CCcCC-cceeeEE
Q 001065 50 DYSHVTVELRTLDGLVKESTQCA-PNGYYF--IPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDD---TGCNG-NEDINFR 122 (1167)
Q Consensus 50 ~~sgv~v~L~~~~G~~~~~t~t~-~nG~y~--~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~---~~~s~-~~dinf~ 122 (1167)
.-..+++.+.+++|....-..++ .+|.|. +---.+|.|.|.+.-- |....-....+.|.. ..|.. +..+.-.
T Consensus 32 ~~~~v~~~v~~PsG~~~~~~v~d~~dgty~v~y~P~~~G~h~i~V~~~-g~~i~gSPf~~~V~~~d~~~~~~~G~GL~~~ 110 (188)
T 2k7p_A 32 KKGEITGEVRMPSGKVAQPTITDNKDGTVTVRYAPSEAGLHEMDIRYD-NMHIPGSPLQFYVDYVNCGHVTAYGPGLTHG 110 (188)
T ss_dssp CSSCEEEEEECTTSCEECCEEEECSSSEEEEEECCCCCEEEEEEEEET-TEECTTCSEEEEECCTTSSSCEEESSTTTEE
T ss_pred cCceEEEEEECCCCCccccEEEeCCCCEEEEEEEccccEeEEEEEEEC-CEecCCCCEEEEecccCCcceEEeCcccccc
Confidence 34578899999999876555554 489887 3334799999988754 233332334444432 11210 0001111
Q ss_pred EeCcEEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEcc--ccCceEEEEEEcCCcee
Q 001065 123 FTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFKN--IIPGKYKLRASHPNLSV 195 (1167)
Q Consensus 123 ~~g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~--l~pG~Y~l~~~~~g~~~ 195 (1167)
..|....=.|... +.+..+..|++...++..+ ...-..+|.|.+.- -.||.|.|.+...+..+
T Consensus 111 ~vg~~~~F~V~t~---------dag~g~l~v~I~gp~~~~~-~~~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I 175 (188)
T 2k7p_A 111 VVNKPATFTVNTK---------DAGEGGLSLAIEGPSKAEI-SCTDNQDGTCSVSYLPVLPGDYSILVKYNEQHV 175 (188)
T ss_dssp ETTSCEEEEEECT---------TCCSSCEEEEEECSSCCEE-EEEECTTSEEEEEEECCSSEEEEEEEEETTEEC
T ss_pred eeCccEEEEEEeC---------CCCCCCeEEEEeCCCCCeE-EEEECCCCEEEEEEEeCCCEEEEEEEEECCEEC
Confidence 1222112123222 2345667787776655333 45677889776554 35799999988766543
No 123
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A
Probab=87.72 E-value=0.37 Score=47.05 Aligned_cols=97 Identities=21% Similarity=0.349 Sum_probs=68.9
Q ss_pred eEEEeeeEEEEEEEccCCCCCcccceEEEEECCc----cee--eceeecCCceEE--E--ecCCCcceEEeeccCcc---
Q 001065 852 FSCQKLSQISVRIYSKDDAGEPIPSVLLSLSGDD----GYR--NNSVSWAGGSFH--F--DNLFPGNFYLRPLLKEY--- 918 (1167)
Q Consensus 852 f~~~~l~~i~~~v~~~~~~~~pl~gvllslsg~~----~~r--~n~~T~~~G~~~--f--~~L~PG~Y~~~~~~key--- 918 (1167)
+.+...+.|+.+|.|. ..|.|-+||.+.|..-+ ... ...+||+||++. + ..|.||.|-|+.-..+|
T Consensus 20 ~~~~~~~~LTtHVLDt-~~G~PAagv~V~L~~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~L~F~tg~Yf~~ 98 (138)
T 3iwv_A 20 MSATLLSPLSTHVLNI-AQGVPGANMTIVLHRLDPVSSAWNILTTGITNDDGRCPGLITKENFIAGVYKMRFETGKYWDA 98 (138)
T ss_dssp ------CCEECCEEET-TTTEECTTCEEEEEEECSSSCCEEEEEEEECCTTSCCTTSSCTTTCCSEEEEEEECHHHHHHH
T ss_pred cccCCCCCceEEEeec-CCccCCCCCEEEEEEECCCCCCcEEEEEEecCCCCCcCCccCcccCCCceEEEEEehHHHHHh
Confidence 4455668889999987 56999999999886432 222 357899999985 2 25789999999766555
Q ss_pred ----ccCC-CceeEEecC-CcEEEEEEEEEeeeEEEE
Q 001065 919 ----AFSP-PAQAIELGS-GESREVIFQATRVAYSAT 949 (1167)
Q Consensus 919 ----~~~p-~~~~i~v~~-G~~~~v~~~~~r~~~s~~ 949 (1167)
.|=| -+..|.|++ +|.-+|-+-..+.+||.|
T Consensus 99 ~g~~~F~p~V~V~F~i~d~~~HYHVPLLlSP~gYSTY 135 (138)
T 3iwv_A 99 LGETCFYPYVEIVFTITNTSQHYHVPLLLSRFSYSTT 135 (138)
T ss_dssp TTCCCSCSCEEEEEEECCTTSCEECCEEEETTEEEEE
T ss_pred cCCCccceeeEEEEEECCCCCCeEEeEEecCCcceee
Confidence 2444 467788987 578888888888888876
No 124
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Probab=87.55 E-value=26 Score=35.48 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=58.2
Q ss_pred cCCceEEEecCCCcceE-Ee--eccCccccCCCceeEEecCC--cEEEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEE
Q 001065 894 WAGGSFHFDNLFPGNFY-LR--PLLKEYAFSPPAQAIELGSG--ESREVIFQATRVAYSATGTITLLSGQPKDGVSVEAR 968 (1167)
Q Consensus 894 ~~~G~~~f~~L~PG~Y~-~~--~~~key~~~p~~~~i~v~~G--~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~ 968 (1167)
...-.+.+.+|.||+-| ++ +.-..-.-.| ..+..... ....+.+.... ..++.=+=....+.++.+-.|+..
T Consensus 74 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~--~~~~t~~~~p~P~~l~~~~~~-~~sv~l~W~~p~~~~i~~Y~v~~~ 150 (203)
T 2gee_A 74 SSVGYYTVTGLEPGIDYDISVYTVKNGGESTP--TTLTQQTAVPPPTDLRFTNIG-PDTMRVTWAPPPSIDLTNFLVRYS 150 (203)
T ss_dssp TTCCEEEECSCCTTCEEEEEEEEESSSCBCCC--EEEEEECCCCCCEEEEEEEEE-TTEEEEEEECCSSCCCSEEEEEEE
T ss_pred CCccEEEeCCCCCCCEEEEEEEEEeCCCcccc--EeeeecCCCcCCCceEEEEcC-CCEEEEEEcCCCCCCccEEEEEEE
Confidence 44568899999999844 44 3322111111 12222222 22333332211 111111112233346777777777
Q ss_pred eCCC--CeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 969 SESK--GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 969 ~~~~--~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..+. ........-..-.|.|.||.||+.|.+++.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~ 189 (203)
T 2gee_A 151 PVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVY 189 (203)
T ss_dssp ETTCGGGCEEEEECTTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred ECCCCCccEEEEcCCCcCEEEECCCCCCCEEEEEEEEec
Confidence 5432 122333344667899999999999999999753
No 125
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=87.00 E-value=5.1 Score=36.16 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=39.7
Q ss_pred ccCccEEEEEeCC--CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEe
Q 001065 959 PKDGVSVEARSES--KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKV 1024 (1167)
Q Consensus 959 p~~gv~v~~~~~~--~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v 1024 (1167)
++.+-.|+....+ ....+....-..-.|.|.||.||+.|.|++.+... ..++.|-+..+..
T Consensus 28 ~i~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~l~gL~P~t~Y~~~V~A~~~-----~g~S~p~~~~~~~ 90 (98)
T 3tes_A 28 AFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVKG-----GHRSNPLSAEFTT 90 (98)
T ss_dssp SCSEEEEEEEETTBCSCCEEEEEETTCSEEEECSCCTTCEEEEEEEEEET-----TEEBCCEEEEEEC
T ss_pred ccceEEEEEEECCCCCceEEEEcCCCcCEEEECCCCCCCEEEEEEEEEeC-----CcccCCEEEEEEc
Confidence 4556666665443 22333344445678999999999999999997532 3455666665553
No 126
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=86.64 E-value=17 Score=49.50 Aligned_cols=209 Identities=14% Similarity=0.117 Sum_probs=108.1
Q ss_pred ceEEEEEeCCCcEEEeEEecC--CcEEEeCCC-CCccEEEEEEcCCCc-----cc-----CCceEEEEEcCCCcCCccee
Q 001065 53 HVTVELRTLDGLVKESTQCAP--NGYYFIPVY-DKGSFVIKVNGPEGW-----SW-----NPDKVAVTVDDTGCNGNEDI 119 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t~t~~--nG~y~~~~l-~~G~Y~l~~~~P~G~-----~~-----~p~~~~v~Vd~~~~s~~~di 119 (1167)
-++|.|.|++|+.+.+....+ .+.|.+|.. ..|.|+|++....+- .| -+-..+|.++... .
T Consensus 160 ~~~v~i~dP~g~~i~~~~~~~~~~~~f~L~~~~~~G~w~I~v~~~~~~~~~~~~F~VeeYvlP~FeV~v~~~~--~---- 233 (1642)
T 3prx_B 160 TVIVEFQTPEGILVSSNSVDLNFFWPYNLPDLVSLGTWRIVAKYEHSPENYTAYFDVRKYVLPSFEVRLQPSE--K---- 233 (1642)
T ss_dssp CEEEEEECSSCCEEEEEEECTTCCCEEECCSSCCCEEEEEEEEETTEEEEEEEEEEECSCCCCSEEEEEEESS--S----
T ss_pred eEEEEEECCCCCEEEEEEecccceEEEEcCCCCCceeEEEEEEeCCCCcEEEEEEEEEEEecCcEEEEEeccc--e----
Confidence 467899999999888755443 567776543 569999988764321 12 1222334443210 0
Q ss_pred eEEEe-CcEEEEEEEeccCCccccCCCCCCcce-EEE--EEeCCCc------EEEEEEeCCCceEEEccc--c-------
Q 001065 120 NFRFT-GFTLLGRVVGAIGGESCLDKGGGPSNV-NVE--LLSHSGD------LISSVITSSEGSYLFKNI--I------- 180 (1167)
Q Consensus 120 nf~~~-g~~IsG~V~~~~g~~s~~~~~~plaGv-~V~--L~~~~g~------~i~~ttTd~~G~f~f~~l--~------- 180 (1167)
-+.+. +-.+..+|....= -|.|++|. .+. +...+.. ......+|.+|.|+|.-- .
T Consensus 234 ~~~~~~~~~~~v~V~ArY~------yGkPV~G~v~v~fg~~~~~~~~~~~~~l~~~~~~dg~G~~~~~~~~~~~~~~~~~ 307 (1642)
T 3prx_B 234 FFYIDGNENFHVSITARYL------YGEEVEGVAFVLFGVKIDDAKKSIPDSLTRIPIIDGDGKATLKRDTFRSRFPNLN 307 (1642)
T ss_dssp EEETTSCCCEEEEEEEEET------TSCBCCEEEEEEEEEEETTEEEECGGGCEEEEEBTTEEEEEECHHHHHHHCCCGG
T ss_pred eEEecCCCeEEEEEEEEeC------CCCceeeeEEEEEEeccCCCccccccccceeEEecCcEEEEEehhhhcccccccc
Confidence 01111 2122333322110 14777763 332 3222111 123456899999997621 0
Q ss_pred -Cc--eEEEEEE---cCCceeEeecceEEEEccCCeeEe----eeeeccceEEeeEEE---eCCCceeceEEEEEECCCC
Q 001065 181 -PG--KYKLRAS---HPNLSVEVRGSTEVELGFENGEVD----DIFFAPGYEIRGLVV---AQGNPILGVHIYLYSDDVG 247 (1167)
Q Consensus 181 -pG--~Y~l~~~---~~g~~~~~~~~~~V~v~~~~~~~~----~~l~~~G~~isG~V~---~~g~Pl~Ga~V~L~~~~~~ 247 (1167)
+- .+.|.++ ..|-.........+.+......+. +.+..+|....++|. .+|.|++++.|.+...
T Consensus 308 ~~~~~~l~V~atV~eE~gg~~~~~~~~~i~i~~~~~~i~f~~~~~~~kpG~p~~~~v~v~~~dg~P~~~~~V~v~~~--- 384 (1642)
T 3prx_B 308 ELVGHTLYASVTVMTESGSDMVVTEQSGIHIVASPYQIHFTKTPKYFKPGMPYELTVYVTNPDGSPAAHVPVVSEAF--- 384 (1642)
T ss_dssp GTSSEEEEEEEEEEETTSSCEEEEEEEEEEEESCSCEEECTTSCSEECTTSCEEEEEEEECTTSCBCCSCEEEEGGG---
T ss_pred cccceEEEEEEEEEEeCCCCEEEeeeeeEEEEecceEEEEEeCccccCCCCCEEEEEEEECCCCCCCCCceEEEEec---
Confidence 11 2334321 233222211112344443333221 334557766777765 3699999998887422
Q ss_pred cccCCCCCCCcccccceeeEEEeCCCCeEEEcc-cCC--ccEEEEEEEe
Q 001065 248 KVDCPQGSGNALGERKALCHAVSDADGKFMFKS-VPC--GQYELVPHYK 293 (1167)
Q Consensus 248 ~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~-Lpp--G~Y~v~~~~~ 293 (1167)
....+||++|...|.= .|. ..+.|.+.+.
T Consensus 385 -----------------~~~~tTd~~G~a~f~i~t~~~~~~l~i~~~~~ 416 (1642)
T 3prx_B 385 -----------------HSMGTTLSDGTAKLILNIPLNAQSLPITVRTN 416 (1642)
T ss_dssp -----------------TEEEECCTTSEEEEEECCCTTCCCCEEEEECC
T ss_pred -----------------cceeeeCCCceEEEEEECCCCCcEEEEEEEEc
Confidence 1467899999877763 332 3577877643
No 127
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=86.47 E-value=2 Score=47.25 Aligned_cols=68 Identities=21% Similarity=0.338 Sum_probs=49.1
Q ss_pred EEeCCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEEEEEecCCeEEEecCceE
Q 001065 227 VVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLV 306 (1167)
Q Consensus 227 V~~~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~~~~~~~~~P~~~ 306 (1167)
+..++..++++.|.|... +..+....||+.|.|.|..|++|.|+|.....+ + |...
T Consensus 203 ~~a~~~~~~~~~vpl~~~-----------------~~~va~~~~d~~G~f~~~~l~~G~y~v~v~a~g------~-p~~~ 258 (274)
T 1ti6_B 203 ILVQGDCFEGAKVVLKSG-----------------GKEVASAETNFFGEFKFDALDNGEYTVEIDADG------K-SYSD 258 (274)
T ss_dssp EEETTEECTTCEEEEEET-----------------TEEEEEEECCTTSEEEEEEECSEEEEEEEEETT------E-EEEE
T ss_pred cccccccccCCEEEEEcC-----------------CcEEEEEeecCcCcEEEeccCCcceEEEEecCC------C-Cccc
Confidence 335677888889998844 234678999999999999999999999996544 4 5555
Q ss_pred EEEEeccceeee
Q 001065 307 SMSVRHQHVTVP 318 (1167)
Q Consensus 307 ~vtV~~~~~~l~ 318 (1167)
.+.|...+..++
T Consensus 259 ~~~~~~~~~~lg 270 (274)
T 1ti6_B 259 TVVIDDKSVDLG 270 (274)
T ss_dssp EEEESSSCEEEE
T ss_pred eeEEccCccccc
Confidence 555544444443
No 128
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A
Probab=86.07 E-value=16 Score=36.98 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=35.1
Q ss_pred CCCCccCccEEEEEeCCCCeeeEEeec-----CcceEEEcCCCCCCEEEEEEEecc
Q 001065 955 LSGQPKDGVSVEARSESKGYYEETVTD-----TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 955 ~~g~p~~gv~v~~~~~~~~~~~~~~Td-----~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.+|.++.+-.|+....+.........+ .+-.|.|.||.|++.|.+++.+..
T Consensus 34 ~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 89 (209)
T 2vkw_A 34 TGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALN 89 (209)
T ss_dssp CCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEEEEEEE
T ss_pred CCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEEEEEEEEc
Confidence 477888888888775542211112111 244899999999999999999753
No 129
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}
Probab=85.87 E-value=23 Score=35.01 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=71.0
Q ss_pred CCCCccCccEEEEEeCC-CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCC-ceEEEEecCcccccc
Q 001065 955 LSGQPKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASP-ESVTVKVGSGDIKGL 1032 (1167)
Q Consensus 955 ~~g~p~~gv~v~~~~~~-~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p-~~~~v~v~~~d~~~~ 1032 (1167)
.+|.++.+-.|+....+ ............-.|.|.+|.|++.|.+++.+....|.... +.+ ...+..-.+.-..++
T Consensus 32 ~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~~~~g~~~~--s~~~~~~t~~~~p~~p~~~ 109 (197)
T 3lpw_A 32 DGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLP--AETAESVKASERPLPPGKI 109 (197)
T ss_dssp CTTSCCCEEEEEEEETTCSSCEEEEEEECSSEEEECCCCTTCEEEEEEEEEETTEECCC--EECSSCEESCCCCCCCSCE
T ss_pred CCCCcccEEEEEEEECCCCccEEeecCCCccEEEEcCCCCCCEEEEEEEEEcCccccCC--CCCccceecCCCCCCCccc
Confidence 45566777777766554 23333334456678999999999999999997543221100 000 011111111222233
Q ss_pred eEEEEecCCeEEEEEEEEecccc--cccceeEEEEEecCCCCceEEEEeeCCceeEEeccCCCC-cEEEEEEe
Q 001065 1033 DFLVFEQPEKTILSGHVEGNRIK--ELNSHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1033 ~f~~~~~~~~~~i~g~V~~~~~~--~~~~~l~v~l~~~~~~~~v~~~~~~~~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
..... ....+.|+ =.....+ .......|..+..+... ...... .....|.+..|.++ .|.+++.+
T Consensus 110 ~~~~~-~~~~v~l~--W~~p~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~-~~~~~~~~~~L~p~t~Y~~~V~A 177 (197)
T 3lpw_A 110 TLMDV-TRNSVSLS--WEKPEHDGGSRILGYIVEMQTKGSDK-WATCAT-VKVTEATITGLIQGEEYSFRVSA 177 (197)
T ss_dssp EEEEE-CSSCEEEE--ECCCSCCTTSCCCEEEEEEEETTCSC-CEEEEE-ESSSEEEECCCCTTCEEEEEEEE
T ss_pred EEEec-cCCeEEEE--ecCCCcCCCCcccEEEEEEEeCCCCc-eEEeec-ccccEEEeCCcCCCCEEEEEEEE
Confidence 32222 12222222 1111100 12345566666554422 222122 23556889999999 68888876
No 130
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=85.25 E-value=20 Score=36.71 Aligned_cols=127 Identities=13% Similarity=0.194 Sum_probs=66.3
Q ss_pred ceEEEEEeCCCcEEE-EEEeCCCceEEEc--cccCceEEEEEEcCCceeEeecc-eEEEEcc---CCeeEee-ee--ecc
Q 001065 150 NVNVELLSHSGDLIS-SVITSSEGSYLFK--NIIPGKYKLRASHPNLSVEVRGS-TEVELGF---ENGEVDD-IF--FAP 219 (1167)
Q Consensus 150 Gv~V~L~~~~g~~i~-~ttTd~~G~f~f~--~l~pG~Y~l~~~~~g~~~~~~~~-~~V~v~~---~~~~~~~-~l--~~~ 219 (1167)
.+++++.+.+|.... ..+-..+|.|.+. .-.+|.|.|.+...+..+. ++ ..+.+.. +...+.. .+ ...
T Consensus 35 ~v~~~v~~PsG~~~~~~v~d~~dgty~v~y~P~~~G~h~i~V~~~g~~i~--gSPf~~~V~~~d~~~~~~~G~GL~~~~v 112 (188)
T 2k7p_A 35 EITGEVRMPSGKVAQPTITDNKDGTVTVRYAPSEAGLHEMDIRYDNMHIP--GSPLQFYVDYVNCGHVTAYGPGLTHGVV 112 (188)
T ss_dssp CEEEEEECTTSCEECCEEEECSSSEEEEEECCCCCEEEEEEEEETTEECT--TCSEEEEECCTTSSSCEEESSTTTEEET
T ss_pred eEEEEEECCCCCccccEEEeCCCCEEEEEEEccccEeEEEEEEECCEecC--CCCEEEEecccCCcceEEeCccccccee
Confidence 466777777776543 3344688987654 4467999999988876543 22 3444432 1111100 00 001
Q ss_pred ceEEeeEEEeCCCceeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccC--CccEEEEEEEecC
Q 001065 220 GYEIRGLVVAQGNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVP--CGQYELVPHYKGE 295 (1167)
Q Consensus 220 G~~isG~V~~~g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp--pG~Y~v~~~~~~~ 295 (1167)
|-...=.|...+....+..|.+.... + ......-+.||.|.+.=.| +|.|.|...+.+.
T Consensus 113 g~~~~F~V~t~dag~g~l~v~I~gp~----------------~-~~~~~~d~~dGty~v~Y~p~~~G~y~i~V~~~g~ 173 (188)
T 2k7p_A 113 NKPATFTVNTKDAGEGGLSLAIEGPS----------------K-AEISCTDNQDGTCSVSYLPVLPGDYSILVKYNEQ 173 (188)
T ss_dssp TSCEEEEEECTTCCSSCEEEEEECSS----------------C-CEEEEEECTTSEEEEEEECCSSEEEEEEEEETTE
T ss_pred CccEEEEEEeCCCCCCCeEEEEeCCC----------------C-CeEEEEECCCCEEEEEEEeCCCEEEEEEEEECCE
Confidence 11111122222223334445444321 1 1124556788977766555 7899998876554
No 131
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}
Probab=85.03 E-value=7.8 Score=38.56 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=34.8
Q ss_pred CCccCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 957 GQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 957 g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
|.++.+-.|+....+.........-..-.|.|.||.||+.|.+++.+...
T Consensus 131 ~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~ 180 (197)
T 3lpw_A 131 GSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNE 180 (197)
T ss_dssp TSCCCEEEEEEEETTCSCCEEEEEESSSEEEECCCCTTCEEEEEEEEEET
T ss_pred CCcccEEEEEEEeCCCCceEEeecccccEEEeCCcCCCCEEEEEEEEEeC
Confidence 44677777777755432222333345678999999999999999997543
No 132
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A
Probab=84.34 E-value=46 Score=35.39 Aligned_cols=187 Identities=17% Similarity=0.151 Sum_probs=90.7
Q ss_pred EEeCCCceEEeCCCCCCceEEEE--EcCCCeEEee------e--C---CceeEEE--eeeEEEEEEEccCCCCCcccceE
Q 001065 814 TSTGADGSFIGGPLYDDITYNVE--ASKPGYYLRQ------V--G---PNSFSCQ--KLSQISVRIYSKDDAGEPIPSVL 878 (1167)
Q Consensus 814 ~~Td~~G~f~~~~L~~~~~y~i~--a~k~gy~~~~------~--~---~~~f~~~--~l~~i~~~v~~~~~~~~pl~gvl 878 (1167)
..+...-+|.+..|.++..|.+. |.-..-.-.+ + . +..+... .-.+|.+.-... +.++.+-.
T Consensus 68 ~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~t~~~~~~P~~l~~~~~~~~sv~l~W~~p---~~~~~~Y~ 144 (290)
T 3r8q_A 68 NLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTK---TETITGFQ 144 (290)
T ss_dssp EECTTCCEEEECSCCSSCEEEEEEEEEETTEECCCEEEEEECCCCCCCCEEEEEEEECSSCEEEEEECC---SCCCCEEE
T ss_pred EcCCCccEEEeCCCCCCCEEEEEEEEEeCCCCCCCcceeEecCCCCCCCceeEEEEcCCCeEEEEEeCC---CCcccEEE
Confidence 34555678999999988777655 4322111000 0 0 1122222 222333333322 23455555
Q ss_pred EEEECCcc--eeeceeecCCceEEEecCCCcc-eEEeecc--CccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEE
Q 001065 879 LSLSGDDG--YRNNSVSWAGGSFHFDNLFPGN-FYLRPLL--KEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTIT 953 (1167)
Q Consensus 879 lslsg~~~--~r~n~~T~~~G~~~f~~L~PG~-Y~~~~~~--key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~ 953 (1167)
+.....++ ..........-.+.+.+|.||. |.++-.+ ..-.-.|....+....+.-..+.+.... ..++.=+=.
T Consensus 145 v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~~~~~t~p~~P~~l~~~~~~-~~sv~l~W~ 223 (290)
T 3r8q_A 145 VDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATT-PNSLLVSWQ 223 (290)
T ss_dssp EEEEESSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEEEEE-TTEEEEEEE
T ss_pred EEEEECCCCcceEEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCEEEEecCCCCCCCccEEEeeC-CCEEEEEEe
Confidence 55432211 1112234456689999999998 4454322 2111122222233333444444443221 111111112
Q ss_pred cCCCCccCccEEEEEeCCCCeeeE--EeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 954 LLSGQPKDGVSVEARSESKGYYEE--TVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 954 ~~~g~p~~gv~v~~~~~~~~~~~~--~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
...| ++.+-.|+....+...... ......-.|.|.||.||+.|.+++.+..
T Consensus 224 ~p~~-~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~ 276 (290)
T 3r8q_A 224 PPRA-RITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALK 276 (290)
T ss_dssp CCSS-CCCEEEEEEECTTSCCEECSSCCCTTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCC-cccEEEEEEEeCCCCcceeEeccCCCccEEEECCCCCCCEEEEEEEEEe
Confidence 2333 5667777766543222111 1113445899999999999999999753
No 133
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10
Probab=84.33 E-value=10 Score=39.54 Aligned_cols=139 Identities=13% Similarity=0.164 Sum_probs=76.3
Q ss_pred cceEEEEEeCCCcEEE-EEEeCCCceEEEccc--cCceEEEEEEcCCceeEeecceEEEEccCCeeEeeeeeccceEEee
Q 001065 149 SNVNVELLSHSGDLIS-SVITSSEGSYLFKNI--IPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGYEIRG 225 (1167)
Q Consensus 149 aGv~V~L~~~~g~~i~-~ttTd~~G~f~f~~l--~pG~Y~l~~~~~g~~~~~~~~~~V~v~~~~~~~~~~l~~~G~~isG 225 (1167)
..++|.+...+|..+. ..+-..+|.|.+.-. .+|.|.|.+...+..+. .....+.+..+... .. ..+. ...=
T Consensus 44 ~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~p~~~G~~~i~V~~~g~~i~-gSPf~v~v~~~~~~-~~-~~~~--~~~f 118 (212)
T 1qfh_A 44 DPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRGNPIK-NMPIDVKCIEGANG-ED-SSFG--SFTF 118 (212)
T ss_dssp CCEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEETTEECB-TCSEEEEEECCCCG-GG-CEEE--EEEE
T ss_pred CeEEEEEECCCCCEeeeEEEECCCcEEEEEEECcCcEEEEEEEEECCEecC-CCcceEEEccCCCC-Cc-eEEE--EEEE
Confidence 3467777766664333 344457899976544 57999999988877653 11144444332110 00 0000 0111
Q ss_pred EEEe---CCCc----eeceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccC--CccEEEEEEEecCC
Q 001065 226 LVVA---QGNP----ILGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVP--CGQYELVPHYKGEN 296 (1167)
Q Consensus 226 ~V~~---~g~P----l~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~Lp--pG~Y~v~~~~~~~~ 296 (1167)
.|.. .|++ .....+.+...+ +...+..+...+|.|.+.=.| +|.|.|...+.+.+
T Consensus 119 ~V~~~D~~G~~~~~G~~~l~v~i~~p~----------------g~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g~~ 182 (212)
T 1qfh_A 119 TVAAKNKKGEVKTYGGDKFEVSITGPA----------------EEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKH 182 (212)
T ss_dssp EEECBCTTSSBCSSCCCCEEEEEEECC----------------SEEEEEEEECSSSEEEEEEEEESSEEEEEEEEETTEE
T ss_pred EEEEeccCCCEeecCCCcEEEEEECCC----------------CceeeEEEECCCCEEEEEEEcCCCEEEEEEEEECCEE
Confidence 1221 2433 344566666542 122356677889988766655 79999999876643
Q ss_pred eEEEecCceEEEEEec
Q 001065 297 TVFDVSPSLVSMSVRH 312 (1167)
Q Consensus 297 ~~~~~~P~~~~vtV~~ 312 (1167)
+..+...+.|..
T Consensus 183 ----I~gSPF~v~V~~ 194 (212)
T 1qfh_A 183 ----IEGSPFKQVLGN 194 (212)
T ss_dssp ----CBTCSEEEEESC
T ss_pred ----CCCCCeEEEEcC
Confidence 344445555544
No 134
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=84.28 E-value=7 Score=42.92 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=42.7
Q ss_pred eEEEEEEEeCCCCceeceEEEE---cceee---eEeCCCceEE--ECcCCCccEEEEEEecc
Q 001065 326 FSVGGRVVDENDMGVEGVKILV---DGHER---SITDRDGYYK--LDQVTSNRYTIEAVKVH 379 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l---~G~~~---~~TD~dG~y~--~~~L~pG~Y~I~~~~~~ 379 (1167)
..++-+|.| .|+||+|..|.+ +|... .+||++|... |....+|.++|++...+
T Consensus 21 ~t~tatV~D-~gnpv~g~~V~fs~~~G~l~~~~~~Td~~G~atvtltst~aG~~~VtA~v~~ 81 (282)
T 1f00_I 21 ITYTVKVMK-GDKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSD 81 (282)
T ss_dssp EEEEEEEEE-TTEECTTCEEEEEESSSEESCSEEECCTTSEEEEEEECSSCEEECEEEEETT
T ss_pred EEEEEEEEE-CCcccCCcEEEEEcCCCccccceeEECCCcEEEEEEEcCCceEEEEEEEECC
Confidence 346668889 999999999988 66432 5899999866 55678999999998765
No 135
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=83.95 E-value=4.1 Score=55.91 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=29.1
Q ss_pred ceEEEEEeCCCcEEEeEEe---cCCcEE----EeCC-CCCccEEEEEEc
Q 001065 53 HVTVELRTLDGLVKESTQC---APNGYY----FIPV-YDKGSFVIKVNG 93 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t~t---~~nG~y----~~~~-l~~G~Y~l~~~~ 93 (1167)
-++|.|.|++|+.+.+... +.+|.| .+|. ...|.|.|++..
T Consensus 161 ~v~v~l~dP~g~~i~~~~~~~t~~~G~~~~~f~Lp~~~~~G~w~I~v~~ 209 (1661)
T 2b39_A 161 TVFITIETPDGIPVKRDSKSSQNQFGILTLSWNIPELVNMGVWKIKAYY 209 (1661)
T ss_dssp CEEEEEEETTEEEEEEEEECTTTTTSCCEEEEECCSSCCCEEEEEEEEE
T ss_pred eEEEEEECCCCCEEeeeeecccccCCeEeeeeeCCCCccccceEEEEEe
Confidence 4799999999998776433 356743 3433 356999999875
No 136
>4fxt_A Uncharacterized protein; PF12866 family, DUF3823, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.77A {Bacteroides ovatus}
Probab=83.79 E-value=20 Score=37.22 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=50.0
Q ss_pred cceEEeeEEEeCCCce----eceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEcccCCccEEEEEEEec
Q 001065 219 PGYEIRGLVVAQGNPI----LGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSVPCGQYELVPHYKG 294 (1167)
Q Consensus 219 ~G~~isG~V~~~g~Pl----~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~LppG~Y~v~~~~~~ 294 (1167)
+...++|+|..+|+|+ .|+.+.|+...-. . ..........||.|+ ..|=.|+|+|.+...+
T Consensus 6 P~a~l~G~iv~tgE~i~~~~~gv~i~l~e~g~~---------~-----~~~~~~~v~qDGtf~-~~lF~G~Yki~~~~nG 70 (202)
T 4fxt_A 6 PKATLTGKAIYDGEAVGVRSGSSEFALFQDGYA---------L-----KGSIPVYIAQDGSYS-VSLFNGDYKLVRMGNA 70 (202)
T ss_dssp CEEEEEEEEEETTEECBCCTTTEEEEEECCC------------------CCEEEEBCTTSEEE-EEEESEEEEEEEEETC
T ss_pred CCceEEEEEEECCCEeeecCCceEEEEEEcccC---------C-----CCCeeEEEcCCCcEE-EEEEcceeEEEECCCC
Confidence 3457899998777665 4799999865210 0 012567889999999 9999999999963213
Q ss_pred CCeEEEecCceEEEEEecc
Q 001065 295 ENTVFDVSPSLVSMSVRHQ 313 (1167)
Q Consensus 295 ~~~~~~~~P~~~~vtV~~~ 313 (1167)
. .+.-...++.+.|...
T Consensus 71 p--f~~~~~dti~v~i~G~ 87 (202)
T 4fxt_A 71 P--WERPSNDTIYITVRGN 87 (202)
T ss_dssp S--BCCCSSCEEEEEESSS
T ss_pred C--cccCCCceEEEEECCC
Confidence 2 1101334566666543
No 137
>1d2o_A Collagen adhesin, CNA; beta sandwich, IGG, IGSF, structural protein; 2.00A {Staphylococcus aureus} SCOP: b.3.5.1 b.3.5.1
Probab=82.85 E-value=46 Score=34.17 Aligned_cols=119 Identities=19% Similarity=0.354 Sum_probs=70.7
Q ss_pred CCCCcceEEEEEeCCCcEEEE--EEeCCCceEEEccccC---c---eEEEEEE-cCCceeEeecceEEEEccCCeeEeee
Q 001065 145 GGGPSNVNVELLSHSGDLISS--VITSSEGSYLFKNIIP---G---KYKLRAS-HPNLSVEVRGSTEVELGFENGEVDDI 215 (1167)
Q Consensus 145 ~~plaGv~V~L~~~~g~~i~~--ttTd~~G~f~f~~l~p---G---~Y~l~~~-~~g~~~~~~~~~~V~v~~~~~~~~~~ 215 (1167)
+..+.-++|.|+. +|..+.+ .+.+.+-.|+|.+||- | .|+|.+. -+||.....+ .. +.+.
T Consensus 19 g~rp~~i~v~L~~-~G~~~~~~~l~~~~~W~~~F~~Lp~y~~G~~i~YtV~E~~v~gY~~~i~G-~~---------ITNt 87 (187)
T 1d2o_A 19 GKRPEKVSVNLLA-NGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKDYTTDING-TT---------ITNK 87 (187)
T ss_dssp SCCCSEEEEEEEE-TTEEEEEEEEEGGGTTEEEEEEEESEETTEECCEEEEECCCTTEEEEEET-TE---------EEEE
T ss_pred CCCCceEEEEEEE-CCeEeeeEEEecCCCcEEEECCCcccCCCCEEEEEEEeCCCCCcEEeecc-EE---------EEcc
Confidence 4567789999987 4644433 2234567899999985 4 6999884 4687654322 11 2222
Q ss_pred eeccceEEeeE-EEeC-----CCceeceEEEEEECCCCcccCCCCCCCcccccceeeE---EEeCCCCeEEEcccCC---
Q 001065 216 FFAPGYEIRGL-VVAQ-----GNPILGVHIYLYSDDVGKVDCPQGSGNALGERKALCH---AVSDADGKFMFKSVPC--- 283 (1167)
Q Consensus 216 l~~~G~~isG~-V~~~-----g~Pl~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~---~~TD~~G~f~f~~Lpp--- 283 (1167)
......+|.++ +..+ +.--..++|.|+... ..... ...+.+..|+|.+||.
T Consensus 88 ~~P~~~~i~V~K~W~d~~~~~~~rP~~I~v~L~~dG-----------------~~~g~~~~l~~~n~W~~tf~~Lp~~~~ 150 (187)
T 1d2o_A 88 YTPGETSATVTKNWDDNNNQDGKRPTEIKVELYQDG-----------------KATGKTAILNESNNWTHTWTGLDEKAK 150 (187)
T ss_dssp ECTTEEEEEEEEEEESSTTSSSCCCSCEEEEEEETT-----------------EEEEEEEEESGGGTTEEEEEEEESEET
T ss_pred ccCccccceeeEEEcCCCCccCCCCceEEEEEEeCC-----------------eEeceEEEEecCCceEEEEcCCCccCC
Confidence 22222345543 4443 222257999999852 11221 2234578999999985
Q ss_pred c---cEEEEEE
Q 001065 284 G---QYELVPH 291 (1167)
Q Consensus 284 G---~Y~v~~~ 291 (1167)
| .|+|.+.
T Consensus 151 G~~i~YtV~E~ 161 (187)
T 1d2o_A 151 GQQVKYTVEEL 161 (187)
T ss_dssp TEECCEEEEEC
T ss_pred CCEEEEEEEEe
Confidence 3 4888773
No 138
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=82.62 E-value=25 Score=36.01 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=36.4
Q ss_pred CCCcceEEEEEeCCCcEEE-EEEeCCCceEE--EccccCceEEEEEEcCCceeE
Q 001065 146 GGPSNVNVELLSHSGDLIS-SVITSSEGSYL--FKNIIPGKYKLRASHPNLSVE 196 (1167)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~-~ttTd~~G~f~--f~~l~pG~Y~l~~~~~g~~~~ 196 (1167)
.....+++++...+|..+. ..+-..+|.|. |..-.+|.|.|.+...|..+.
T Consensus 28 ~~~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~~~G~~~i~V~~~g~~V~ 81 (191)
T 2k7q_A 28 TDLSLLTATVVPPSGREEPCLLKRLRNGHVGISFVPKETGEHLVHVKKNGQHVA 81 (191)
T ss_dssp CCSSSEEEEEECTTSCCEECEEEECTTSCEEEECCCSSSEEEEEEEEETTEECT
T ss_pred CCCCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEccCCEeEEEEEEECCEECC
Confidence 4556688888888885443 34447789886 555568999999988886653
No 139
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A
Probab=82.45 E-value=31 Score=34.88 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=60.5
Q ss_pred cCCceEEEecCCCcceE-Eeecc-CccccCCCceeE--EecCC----cEEEEEEEEEe-eeEEEEEEEEcC--CCCccCc
Q 001065 894 WAGGSFHFDNLFPGNFY-LRPLL-KEYAFSPPAQAI--ELGSG----ESREVIFQATR-VAYSATGTITLL--SGQPKDG 962 (1167)
Q Consensus 894 ~~~G~~~f~~L~PG~Y~-~~~~~-key~~~p~~~~i--~v~~G----~~~~v~~~~~r-~~~s~~G~V~~~--~g~p~~g 962 (1167)
...-.+.+.+|.|++-| ++-.+ ...-..+.+..+ ...++ .-..+.+.... ...++.=+=... .+.++.+
T Consensus 61 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~g~i~~ 140 (211)
T 3p4l_A 61 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITG 140 (211)
T ss_dssp ESSSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCCSCCCE
T ss_pred CCceEEEecCcCCCCEEEEEEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCCCCEEE
Confidence 33457899999999855 44221 122222323222 32222 22344444331 122222111211 2236777
Q ss_pred cEEEEEeCCCC----eeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 963 VSVEARSESKG----YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 963 v~v~~~~~~~~----~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
-.|+....+.. ..........-.|.|.||.||+.|.+++.+..
T Consensus 141 Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 187 (211)
T 3p4l_A 141 YIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARN 187 (211)
T ss_dssp EEEEEESCTTSCGGGSEEEEEESSCSEEEECCCCTTCEEEEEEEEEE
T ss_pred EEEEEEECCCCCCCceEEEEecCCeeEEEEcCCCCCCEEEEEEEEEc
Confidence 77777754321 13334455667899999999999999999753
No 140
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}
Probab=81.98 E-value=28 Score=34.96 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=33.1
Q ss_pred CCccCccEEEEEeCC--CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 957 GQPKDGVSVEARSES--KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 957 g~p~~gv~v~~~~~~--~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
+.++.+-.|+....+ ....+.......-.|.|.||.||..|.+++.+...
T Consensus 27 ~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 78 (201)
T 2ha1_A 27 PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQ 78 (201)
T ss_dssp STTCCEEEEEEEETTCSSCCEEEEECTTCCEEEECSCCTTEEEEEEEEEECT
T ss_pred CCCceEEEEEEEECCCCCceEEEecCCCccEEEecCCCCCCEEEEEEEEEec
Confidence 456666666665432 22223233334568999999999999999998643
No 141
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A {Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Probab=81.52 E-value=62 Score=35.28 Aligned_cols=131 Identities=11% Similarity=0.178 Sum_probs=60.0
Q ss_pred ceEEEEEeCCCcEEEeEEecCCcEEE---eCCCCCccEEEEEEcCCCcccCCceEEEEEcCCCcCCcceeeEEEeCcEEE
Q 001065 53 HVTVELRTLDGLVKESTQCAPNGYYF---IPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDDTGCNGNEDINFRFTGFTLL 129 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t~t~~nG~y~---~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~~~~s~~~dinf~~~g~~Is 129 (1167)
+++|.+..+.+..+.-.+ ..||.|. .|. .+|.|.|.++--. -+..-....+.|.+.. ++.- .+.
T Consensus 38 ~l~v~i~~p~~~~~~~~d-~~dGty~v~y~p~-~~G~y~i~V~~~g-~~i~gSPf~v~v~~~~-----~v~~-----~~~ 104 (288)
T 2j3s_A 38 GLSLSIEGPSKVDINTED-LEDGTCRVTYCPT-EPGNYIINIKFAD-QHVPGSPFSVKVTGEG-----RVKE-----SIT 104 (288)
T ss_dssp CEEEEEESSSCCEEEEEE-CTTSEEEEEEECS-SCEEEEEEEEETT-EECTTCSEEEEEESCC-----SEEE-----EEE
T ss_pred cEEEEEECCCCceeEEEE-CCCCEEEEEEECC-CCeEEEEEEEECC-EECCCCCEEEEEcCCc-----cccc-----eec
Confidence 556666655553222111 3378776 344 7899999887542 3333233344444320 1110 111
Q ss_pred EEEEe----ccCCccc---cCCCCCCcceEEEEEeCCCcEEEE-EEeCCCceEEEc--cccCceEEEEEEcCCceeE
Q 001065 130 GRVVG----AIGGESC---LDKGGGPSNVNVELLSHSGDLISS-VITSSEGSYLFK--NIIPGKYKLRASHPNLSVE 196 (1167)
Q Consensus 130 G~V~~----~~g~~s~---~~~~~plaGv~V~L~~~~g~~i~~-ttTd~~G~f~f~--~l~pG~Y~l~~~~~g~~~~ 196 (1167)
+.... ..|...+ ...+......++++.+.+|..... ..-..+|.|.+. ...+|.|.|.+...|..+.
T Consensus 105 ~~~~~~~~~~vg~~~~~~~~~~~~~~~~l~~~V~~psG~~~~~~v~~~~~g~y~v~f~P~e~G~h~v~V~~~g~~i~ 181 (288)
T 2j3s_A 105 RRRRAPSVANVGSHCDLSLKIPEISIQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKGQHVP 181 (288)
T ss_dssp EEECCCCCCSCCSSCCC--------CCCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETTEECT
T ss_pred ccccCCCccccCcceEEEEEcCCCCcCceEEEEECCCCCeeeeEEEeCCCCEEEEEEecccceeeEEEEEECCeeCC
Confidence 11100 0010000 001123445677777777754433 233477877654 4457999999988776643
No 142
>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel, pilus assembly, outer-membrane, cell adhesion-T protein-chaperone complex; 2.80A {Escherichia coli} PDB: 3ohn_A 1zdv_A
Probab=81.16 E-value=5 Score=50.98 Aligned_cols=104 Identities=16% Similarity=0.078 Sum_probs=82.8
Q ss_pred eeecCCceEEEecCCCcceEEeec-----cCccccCCCceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccC-ccE
Q 001065 891 SVSWAGGSFHFDNLFPGNFYLRPL-----LKEYAFSPPAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKD-GVS 964 (1167)
Q Consensus 891 ~~T~~~G~~~f~~L~PG~Y~~~~~-----~key~~~p~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~-gv~ 964 (1167)
..||..|...+.+|.|=+.--..+ ..+.++.-+.+.|...+|.-..+.|...+ ...+..+++.- |+|+| |+.
T Consensus 692 ~~Td~~G~avvp~l~pY~~N~i~iD~~~Lp~dvel~~t~~~v~P~~GAvv~~~F~~~~-g~~~l~~l~~~-G~~lPfGa~ 769 (843)
T 3rfz_B 692 VRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARV-GIKLLMTLTHN-NKPLPFGAM 769 (843)
T ss_dssp CBCCTTSEEEESCCCTTSCEEEEBCGGGSCTTEEESCSEEEECBCTTCEEEEECCEEE-SEEEEEEEEET-TEECCTTCE
T ss_pred ceECCCCeEEECCCCcccccEEEEcCCCCCCCEEEeccEEEEEECCCCEEEEEEEEEe-eEEEEEEEeeC-CCCCCCceE
Confidence 579999999999999966553332 45789999999999999999999987665 55778889888 99999 888
Q ss_pred EEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEE
Q 001065 965 VEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVV 1002 (1167)
Q Consensus 965 v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~ 1002 (1167)
|. +.++ ........+|++.|+||.|+.. ++|+
T Consensus 770 V~--~~~~--~~~giVg~~G~vyl~gl~~~~~--L~V~ 801 (843)
T 3rfz_B 770 VT--SESS--QSSGIVADNGQVYLSGMPLAGK--VQVK 801 (843)
T ss_dssp EE--ESSS--SCEEECCGGGEEEEEEECSEEE--EEEE
T ss_pred EE--cCCC--cEEEEEcCCCEEEEEcCCCCcE--EEEE
Confidence 75 3332 2467899999999999988854 5555
No 143
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Probab=80.65 E-value=3.4 Score=38.97 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=37.3
Q ss_pred CCCCccCccEEEEEeCC-CC-eeeEEeecCcceEEEcCCCCCCEEEEEEEec
Q 001065 955 LSGQPKDGVSVEARSES-KG-YYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 1004 (1167)
Q Consensus 955 ~~g~p~~gv~v~~~~~~-~~-~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~ 1004 (1167)
-+|.|+.+-.|+-+..+ .. ..+....-..-.|.|.||.||+.|.+++.+.
T Consensus 33 dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~frV~A~ 84 (114)
T 2kbg_A 33 DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAA 84 (114)
T ss_dssp CSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECCCCTTCCEEEEEEEE
T ss_pred CCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcCCCCCCEEEEEEEEE
Confidence 36789999999988653 21 2233334455689999999999999999975
No 144
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1
Probab=80.55 E-value=39 Score=41.67 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=36.8
Q ss_pred CCCcceEEEEEeCCCcEEEEEEeCCCceEEEccccCceEEEEEEcC
Q 001065 146 GGPSNVNVELLSHSGDLISSVITSSEGSYLFKNIIPGKYKLRASHP 191 (1167)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~~l~pG~Y~l~~~~~ 191 (1167)
.+++.+.|+|...+|. .....|+.+|...|..+.||+|.|.+..+
T Consensus 461 ~~~~~~~v~l~~~~~~-~~~~~t~~dg~~~~~~~~~G~Y~~~v~g~ 505 (671)
T 1r6v_A 461 FGVPTVFVSMMRDNGS-CYYAKTGPDGIARFPHIDSGTYDIFVGGP 505 (671)
T ss_dssp SBCTTEEEEEECSSSC-CEEEECCTTSEEEEEEEECEEEEEEEEEE
T ss_pred cCcceeEEEEecCCCc-eEecccCCCCceeeeccCceEEEEEEecc
Confidence 4567788999877664 45778999999999999999999988554
No 145
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=80.44 E-value=88 Score=38.37 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.7
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|.||.||+.|.|+|.+..
T Consensus 332 ~~~~~~l~~L~p~t~Y~~~V~A~n 355 (680)
T 1zlg_A 332 FQNSVILEKLQPDCDYVVELQAIT 355 (680)
T ss_pred CeeEEEeCCCCCCCEEEEEEEEEE
Confidence 346899999999999999999754
No 146
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=79.39 E-value=59 Score=39.64 Aligned_cols=43 Identities=19% Similarity=0.398 Sum_probs=30.3
Q ss_pred ceEEEEEeCCCcEEEeEEe-cCCcEEE--e--C-CCCCccEEEEEEcCC
Q 001065 53 HVTVELRTLDGLVKESTQC-APNGYYF--I--P-VYDKGSFVIKVNGPE 95 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t~t-~~nG~y~--~--~-~l~~G~Y~l~~~~P~ 95 (1167)
-+++.+.|++|+.+.+... .++|.|. | | .-..|.|.|++....
T Consensus 154 ~~~v~i~dp~g~~v~~~~~~~~~G~~~~~f~Lp~~~~~G~w~i~v~~~~ 202 (656)
T 4fxk_A 154 TITVMVENSHGLRVRKKEVYMPSSIFQDDFVIPDISEPGTWKISARFSD 202 (656)
T ss_dssp CEEEEEECTTCCEEEEEEECCTTSEEEEEEECCTTCCSEEEEEEEEESS
T ss_pred cceEEEECCCCcEEeeeEEecCCceEEEEecCCCCCCCcCEEEEEEEcC
Confidence 4678999999988776543 4477655 3 2 234699999987644
No 147
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A
Probab=78.78 E-value=8.6 Score=39.17 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=33.8
Q ss_pred CCCccCccEEEEEeCCC--CeeeEEeec-CcceEEEcCCCCCCEEEEEEEeccC
Q 001065 956 SGQPKDGVSVEARSESK--GYYEETVTD-TSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~~--~~~~~~~Td-~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
.+.++.+-.|+....+. ......... ..-.|.|.||.||+.|.++|.+...
T Consensus 143 ~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~ 196 (214)
T 2ibg_A 143 DEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSA 196 (214)
T ss_dssp CGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECS
T ss_pred CCCCcceEEEEEEECCCCcceEEeeccCCcceEEEeCCCCCCCEEEEEEEEEcC
Confidence 34567777777764432 222222222 2468999999999999999997543
No 148
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}
Probab=78.77 E-value=44 Score=34.11 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=73.6
Q ss_pred CcccceEEEEEeCCCcEEEeEEe-cCCcEEE---eCCCCCccEEEEEEcCCCcccCCceEEEEEcC----C--CcCC-cc
Q 001065 49 LDYSHVTVELRTLDGLVKESTQC-APNGYYF---IPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDD----T--GCNG-NE 117 (1167)
Q Consensus 49 i~~sgv~v~L~~~~G~~~~~t~t-~~nG~y~---~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~----~--~~s~-~~ 117 (1167)
.+...+++++..++|....-... ..+|.|. .|. ..|.|.|.++-- |.+..-....+.|.. + .|.. +.
T Consensus 28 ~~~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~-~~G~~~i~V~~~-g~~V~gSPf~v~V~~~~~~d~~~~~~~G~ 105 (191)
T 2k7q_A 28 TDLSLLTATVVPPSGREEPCLLKRLRNGHVGISFVPK-ETGEHLVHVKKN-GQHVASSPIPVVISQSEIGDASRVRVSGQ 105 (191)
T ss_dssp CCSSSEEEEEECTTSCCEECEEEECTTSCEEEECCCS-SSEEEEEEEEET-TEECTTCSEEEEECGGGTTCGGGCEEESG
T ss_pred CCCCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEcc-CCEeEEEEEEEC-CEECCCCCEEEEEcccCCCCcceEEEeCc
Confidence 34568999999999976554444 4588776 454 789999988763 344433334455431 1 1110 00
Q ss_pred eeeEEEeCcEEEEEEEeccCCccccCCCCCCcceEEEEEeCCCcEEEEEEeCCCceEEEc--cccCceEEEEEEcCCcee
Q 001065 118 DINFRFTGFTLLGRVVGAIGGESCLDKGGGPSNVNVELLSHSGDLISSVITSSEGSYLFK--NIIPGKYKLRASHPNLSV 195 (1167)
Q Consensus 118 dinf~~~g~~IsG~V~~~~g~~s~~~~~~plaGv~V~L~~~~g~~i~~ttTd~~G~f~f~--~l~pG~Y~l~~~~~g~~~ 195 (1167)
.+.-...|....=.|... +.+..++.|.+...++. -....-..+|.|.+. .-.||.|.|.+...+.++
T Consensus 106 Gl~~~~~g~~~~F~V~t~---------dag~g~l~v~V~gp~~~-~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I 175 (191)
T 2k7q_A 106 GLHEGHTFEPAEFIIDTR---------DAGYGGLSLSIEGPSKV-DINTEDLEDGTCRVTYCPTEPGNYIINIKFADQHV 175 (191)
T ss_dssp GGTEEESSSCEEEEEECG---------GGCSEEEEEEEEESSCE-EEEEEECTTSCEEEEEEESSCEEEEEEEEETTEEC
T ss_pred cccceecCCcEEEEEEeC---------CCCCCceEEEEECCCCc-eEEEEECCCCEEEEEEEeCCCceEEEEEEECCEEC
Confidence 011111121111122222 13445567777655442 224455677966544 446799999988776554
No 149
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=77.37 E-value=83 Score=34.67 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=35.1
Q ss_pred CCCCccCccEEEEEeCCCC-eeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 955 LSGQPKDGVSVEARSESKG-YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 955 ~~g~p~~gv~v~~~~~~~~-~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
.+|.|+.+..++....+.. .........+..+.|.+|.|++.|.+++.+...
T Consensus 222 ~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~ 274 (389)
T 2jll_A 222 HGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNG 274 (389)
T ss_dssp CTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEES
T ss_pred CCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcC
Confidence 3466777777776655432 222223345578999999999999999987533
No 150
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=77.32 E-value=56 Score=44.85 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=39.0
Q ss_pred EEEEEEEEcCCCCccCccEEEEEeCCC---Ce------eeEEeecCcc--eEEEcCCCCC-CEEEEEEEecc
Q 001065 946 YSATGTITLLSGQPKDGVSVEARSESK---GY------YEETVTDTSG--SYRLRGLHPD-TTYVIKVVKKD 1005 (1167)
Q Consensus 946 ~s~~G~V~~~~g~p~~gv~v~~~~~~~---~~------~~~~~Td~~G--~~~i~gL~pg-~~y~v~~~~~~ 1005 (1167)
|.+.=.+...+|+|++++.|++..... .+ ....+||++| .|.|. +..+ .+|.|+++..+
T Consensus 369 ~~~~v~~~~~dG~p~~~~~v~l~~~~~~~~~~~~~~~~~~~~~t~~~G~~~~~~~-~~~~~~~~~l~v~~~d 439 (1676)
T 3cu7_A 369 YPIKVQVKDSLDQLVGGVPVTLNAQTIDVNQETSDLDPSKSVTRVDDGVASFVLN-LPSGVTVLEFNVKTDA 439 (1676)
T ss_dssp EEEEEEEEETTCCBCCSCEEEEEEEEEETTSCEEECCCEEEECCSSSCEEEEEEC-CCTTEEEEEEEEEECC
T ss_pred EEEEEEEEcCCCCccCcceEEEeccccccccccccccccceeEECCCCeEEEEEE-CCCCCeEEEEEEEEcc
Confidence 344445678999999999988764321 11 3367899999 56665 4444 35788888643
No 151
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=76.77 E-value=72 Score=43.06 Aligned_cols=218 Identities=14% Similarity=0.135 Sum_probs=111.7
Q ss_pred eEEeccccCCCCCe-EEEEEeccchhhhhcccCceeE--EEEeCCCce----EEeCCCCCCceEEEEEcCC-CeEEee--
Q 001065 777 LYTEGSVSPPLSGV-NIRIIAAEDSQIASLKKGHLAL--ETSTGADGS----FIGGPLYDDITYNVEASKP-GYYLRQ-- 846 (1167)
Q Consensus 777 ~~i~G~v~p~l~gv-~i~i~~~~~~~~~~~~~g~~~~--~~~Td~~G~----f~~~~L~~~~~y~i~a~k~-gy~~~~-- 846 (1167)
+.++..-.|.-..+ .|+|.+.++ ..+. ...++..|- |.+.+...-..|.|.+... |-....
T Consensus 126 ~~~~~~~~p~~~~~~~v~i~dp~g---------~~i~~~~~~~~~~G~~~~~f~L~~~~~~G~w~I~~~~~~~~~~~~~F 196 (1451)
T 4acq_A 126 VSMDENFHPLNELIPLVYIQDPKG---------NRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSGGRTEHPF 196 (1451)
T ss_dssp EEECTTCCBCCCEEEEEEEECTTS---------CEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTTCCEEEEEE
T ss_pred EEECCCCcCccCceeEEEEECCCC---------CEEEEeeeccCCCCeEEEEeECCCCCCceeEEEEEEecCCceEEEEE
Confidence 44555556654443 467776554 3332 356777774 5566666667999999865 322221
Q ss_pred --eC---C---ceeEEEe-----eeEEEEEEEccCCCCCcccceEEE-EECC-ccee-------------eceeecCCce
Q 001065 847 --VG---P---NSFSCQK-----LSQISVRIYSKDDAGEPIPSVLLS-LSGD-DGYR-------------NNSVSWAGGS 898 (1167)
Q Consensus 847 --~~---~---~~f~~~~-----l~~i~~~v~~~~~~~~pl~gvlls-lsg~-~~~r-------------~n~~T~~~G~ 898 (1167)
.+ | ..+...+ -..+.++|...=.-|.|.+|...- +-.. ..|+ ....+|.+|.
T Consensus 197 ~V~eYvlP~FeV~v~~~~~~~~~~~~~~~~i~a~Y~~G~pV~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 276 (1451)
T 4acq_A 197 TVEEFVLPKFEVQVTVPKIITILEEEMNVSVCGLYTYGKPVPGHVTVSICRKYSDASDCHGEDSQAFCEKFSGQLNSHGC 276 (1451)
T ss_dssp EECCCCCCSCEEEEECCSEEESSCSCCEEEEEEECSSSCBCCCEEEECCBCCCTTTTTSCSSCCCCCBCCEEEECCSSCC
T ss_pred EEeeeeCCcEEEEEeCCceEeecCCEEEEEEEEEEcCCCEEcceEEEEEEEeccccccccccccccccceeeEEEcCCeE
Confidence 11 1 1122111 133556665554559999995332 2111 1121 1245677787
Q ss_pred EEEe-cC---------CCcceEEeeccCccccC---CCceeEEecCCcEEEEEEEEEee------eEEEEEEEEcCCCCc
Q 001065 899 FHFD-NL---------FPGNFYLRPLLKEYAFS---PPAQAIELGSGESREVIFQATRV------AYSATGTITLLSGQP 959 (1167)
Q Consensus 899 ~~f~-~L---------~PG~Y~~~~~~key~~~---p~~~~i~v~~G~~~~v~~~~~r~------~~s~~G~V~~~~g~p 959 (1167)
+.|. ++ ....+++.+...|---. -....|.|.. ....+.|..++. .|.+.=+|+..+|.|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~V~atVtE~gtg~~~~~~~~i~i~~-s~~~i~f~~t~~~fkPG~pf~~~v~v~~~dg~P 355 (1451)
T 4acq_A 277 FYQQVKTKVFQLKRKEYEMKLHTEAQIQEEGTVVELTGRQSSEITR-TITKLSFVKVDSHFRQGIPFFGQVRLVDGKGVP 355 (1451)
T ss_dssp CEEECCGGGSCSSSSCCBCBCEEEEECSSSCCSCCEEECCCCEEEC-CCSEEEEEEECSEECSSSCCEEEEEEECTTSCB
T ss_pred EEEEEEHHHhcchhhccCeEEEEEEEEEEccceEEEeceEEEEEEe-eeeEEEEecCCCcccCCCcEEEEEEEEcCCCCc
Confidence 7764 10 11223333322210000 0000001100 012455555543 344667778999999
Q ss_pred cCccEEEEEeCCCCeeeEEeecCcceEEEcCCCC--C-CEEEEEEEec
Q 001065 960 KDGVSVEARSESKGYYEETVTDTSGSYRLRGLHP--D-TTYVIKVVKK 1004 (1167)
Q Consensus 960 ~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~p--g-~~y~v~~~~~ 1004 (1167)
++++.|++.-....+..+.+||+||...+.==.| + ..+.|+++..
T Consensus 356 ~~~~~v~v~~~~~~~~~~~~t~~~G~a~f~i~~~~~~~~~l~i~~~~~ 403 (1451)
T 4acq_A 356 IPNKVIFIRGNEANYYSNATTDEHGLVQFSINTTNVMGTSLTVRVNYK 403 (1451)
T ss_dssp CCSCBCEEEETTTCCCCCCBCCTTSEEEEECCCCSSSCEEEEEESCCC
T ss_pred CCCceEEEEecccceeeeeEeCCCCcEEEEEeCCCCCCcEEEEEEEEe
Confidence 9999998875443344678999999766553223 2 3577776643
No 152
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Probab=76.60 E-value=81 Score=33.32 Aligned_cols=132 Identities=11% Similarity=0.075 Sum_probs=67.2
Q ss_pred ccCccEEEEEeCCCC-----eeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecCcc----c
Q 001065 959 PKDGVSVEARSESKG-----YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGD----I 1029 (1167)
Q Consensus 959 p~~gv~v~~~~~~~~-----~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d----~ 1029 (1167)
++.+-.|+....+.. ..........-.|.+.||.||+.|.+++.+....| ...|....+. ..++ .
T Consensus 127 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g-----~g~~~~~~~~-t~~~~P~~~ 200 (290)
T 3l5i_A 127 SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADG-----PGSPESIKAY-LKQAPPSKG 200 (290)
T ss_dssp CCCEEEEEEEEECSSSCCCCEEEEEETTCSEEECCSCCCTTCEEEEEEEEEETTE-----ECCCEEEEEE-SSCCCCSSC
T ss_pred CCCcEEEEEEECCCCCCCCcCeEEccCCCcceEEecCcCCccEEEEEEEEEeCCc-----ccccEEEEeE-ccccCCCCC
Confidence 666777766533211 12223344556788899999999999999753322 1123333332 2222 2
Q ss_pred ccceEEEEecCCeEEEEEEEEecc---cccccceeEEEEEecCCCCceEEEEe-eCCceeEEeccCCCC-cEEEEEEe
Q 001065 1030 KGLDFLVFEQPEKTILSGHVEGNR---IKELNSHLLVEIKSASDTSKVESVIS-LPMSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1030 ~~~~f~~~~~~~~~~i~g~V~~~~---~~~~~~~l~v~l~~~~~~~~v~~~~~-~~~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
-++..... ....+.|+ =.... ..-.+...+|..+..++.. .. .. -.....|.+..|.++ .|.+++..
T Consensus 201 p~~~~~~~-~~~sv~l~--W~~~~~~~~~g~i~~Y~v~~~~~~~~~--~~-~~~~~~~~~~~~~~L~p~t~Y~~~V~A 272 (290)
T 3l5i_A 201 PTVRTKKV-GKNEAVLE--WDQLPVDVQNGFIRNYTIFYRTIIGNE--TA-VNVDSSHTEYTLSSLTSDTLYMVRMAA 272 (290)
T ss_dssp CCEEEEEE-CSSCEEEE--ECCCCHHHHSSCCCEEEEEEEETTSCC--EE-EEEETTCSEEEECSCCTTCEEEEEEEE
T ss_pred CeeeEeec-cCCEEEEE--EcCCChhccCCEEEEEEEEEEeCCCCe--EE-EEeCCCceEEEeCCCCCCCEEEEEEEE
Confidence 23322222 12222222 11001 0112345566666654422 22 22 234457999999999 59988875
No 153
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A
Probab=75.67 E-value=17 Score=36.80 Aligned_cols=50 Identities=24% Similarity=0.289 Sum_probs=33.7
Q ss_pred CCCccCccEEEEEeCCCCee-eEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 956 SGQPKDGVSVEARSESKGYY-EETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~~~~~-~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.+.++.+-.|+......... ........-.|.|.||.||+.|.+++.+..
T Consensus 136 ~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 186 (209)
T 2vkw_A 136 GGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAEN 186 (209)
T ss_dssp TTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCCceEEEEEECCCCCCceeeecCCCccEEEecCCCCCCEEEEEEEEEe
Confidence 45677788887775322222 222222345899999999999999999753
No 154
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1
Probab=75.54 E-value=14 Score=45.64 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=71.1
Q ss_pred EEEEEeCCC-CceeceEEEEc---cee-eeEeCCCceEEECcCCCccEEEEEEecccccccee---------eEEEcCCc
Q 001065 329 GGRVVDEND-MGVEGVKILVD---GHE-RSITDRDGYYKLDQVTSNRYTIEAVKVHYKFNKLK---------EYMVLPNM 394 (1167)
Q Consensus 329 ~G~V~d~~G-~pl~Ga~V~l~---G~~-~~~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~~~~~---------~v~v~p~~ 394 (1167)
...|.|..| -+++.+.|.|. |.. ...|+.||...|.++.||+|+|.+..+...-.... .+++.-..
T Consensus 451 ~v~vtd~~~~~~~~~~~v~l~~~~~~~~~~~t~~dg~~~~~~~~~G~Y~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (671)
T 1r6v_A 451 QVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIARFPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRM 530 (671)
T ss_dssp EEEEECTTSCSBCTTEEEEEECSSSCCEEEECCTTSEEEEEEEECEEEEEEEEEECCCSCCSCTTTSCCCCCSCSSCSCG
T ss_pred EEEEecCCCCcCcceeEEEEecCCCceEecccCCCCceeeeccCceEEEEEEecccccCCCccccccccCCceeeeccch
Confidence 345666644 35667777773 332 36899999999999999999999866542222110 00000011
Q ss_pred ceeceEEEEee-------EEEEE------EEEcC---CcccEEEEEEcCCCcccceeeeecCCeEEEEEEcCeeEEEEEE
Q 001065 395 ASIADIKAISY-------DICGV------VRTVG---SGNKVKVALTHGPDKVKPQVKQTDNNGNFCFEVPPGEYRLSAM 458 (1167)
Q Consensus 395 ~~i~dI~~~~~-------~V~G~------V~~~~---~~~~a~VtL~~~~~~~~~~~~~Td~~G~f~f~L~pG~Y~v~~~ 458 (1167)
.....-.+..| .+.++ |.... .....++.+.+.......+.....+++.|.|...+|.|.|...
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (671)
T 1r6v_A 531 AEERQASFVGFGVSPDATQLNVNFNSTLQVKFSTNLSTLKDPQFVVVDPLLRGVYGRVAYARNQTYDLSLLSGQISFGIQ 610 (671)
T ss_dssp GGCCEEEEEEEEEBTTBCEEEEECCCCEEEEECCCCTTSSSCEEEEECTTCSCEEEEEECCTTCEEECTTCEEEEEEEEE
T ss_pred hhhcccccccccccccceEEEEEEeeEEEEEecCcCCCCCCceEEEecCccccceEEeeeccCCceEeEecCCeEEEEEE
Confidence 11011111111 22222 11111 1234455555432221134566677999999977999999987
Q ss_pred e
Q 001065 459 A 459 (1167)
Q Consensus 459 ~ 459 (1167)
.
T Consensus 611 ~ 611 (671)
T 1r6v_A 611 T 611 (671)
T ss_dssp C
T ss_pred e
Confidence 7
No 155
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1 b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Probab=75.46 E-value=19 Score=39.47 Aligned_cols=131 Identities=22% Similarity=0.181 Sum_probs=73.7
Q ss_pred CCCCcceEEEEEeCCCcEE-EEEEeCCCceEEE--ccccCceEEEEEEcCCceeEeecceEEEEccCCeeEeeeeeccce
Q 001065 145 GGGPSNVNVELLSHSGDLI-SSVITSSEGSYLF--KNIIPGKYKLRASHPNLSVEVRGSTEVELGFENGEVDDIFFAPGY 221 (1167)
Q Consensus 145 ~~plaGv~V~L~~~~g~~i-~~ttTd~~G~f~f--~~l~pG~Y~l~~~~~g~~~~~~~~~~V~v~~~~~~~~~~l~~~G~ 221 (1167)
+.|++|..|.....+|... .+.+||++|...+ ....+|.+.|.++..+-..... ...|+.-++ ..+.. ...
T Consensus 31 gnpv~g~~V~fs~~~G~l~~~~~~Td~~G~atvtltst~aG~~~VtA~v~~~~~~~~-a~~VtFva~-~~i~~----~~v 104 (282)
T 1f00_I 31 DKPVSNQEVTFTTTLGKLSNSTEKTDTNGYAKVTLTSTTPGKSLVSARVSDVAVDVK-APEVEFFTT-LTIDD----GNI 104 (282)
T ss_dssp TEECTTCEEEEEESSSEESCSEEECCTTSEEEEEEECSSCEEECEEEEETTCCCCEE-CCCEEEECC-CEECT----TCE
T ss_pred CcccCCcEEEEEcCCCccccceeEECCCcEEEEEEEcCCceEEEEEEEECCCccccc-cccceeecc-ccccc----cee
Confidence 5899999999988777432 3688999999875 4567999999998766221111 112332221 11111 011
Q ss_pred EEeeEEEeC---CCceeceEEEEEECCCCcccCCCCCCC-cccccceeeEEEeC-CCCeEEEcccCCccEEEEEEE
Q 001065 222 EIRGLVVAQ---GNPILGVHIYLYSDDVGKVDCPQGSGN-ALGERKALCHAVSD-ADGKFMFKSVPCGQYELVPHY 292 (1167)
Q Consensus 222 ~isG~V~~~---g~Pl~Ga~V~L~~~~~~~~~c~~g~~~-~~~~g~~~~~~~TD-~~G~f~f~~LppG~Y~v~~~~ 292 (1167)
.+.|...+. ...+.+++|.|...+... ... ...+ -..+..| ++|.-+|.. .|+-+|.+..
T Consensus 105 ~vng~~adg~~p~t~~~~a~~~l~~~~~n~------~ytWsSs~---~~~~sVd~~~G~Vt~~~--~GtvtITats 169 (282)
T 1f00_I 105 EIVGTGVKGKLPTVWLQYGQVNLKASGGNG------KYTWRSAN---PAIASVDASSGQVTLKE--KGTTTISVIS 169 (282)
T ss_dssp EETTTCCEESCCSEEETTCEEECCEESTTS------CEEEEESC---TTTEEECTTTCEEEECS--SSCEEEEEEE
T ss_pred eecccccCccCCcccccceEEEEEecCCcc------eEEEeccC---CceEEEcCCCceEEECC--CceEEEEEEc
Confidence 222221111 234677888876553210 000 0000 0124578 899998866 6888888753
No 156
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=73.82 E-value=12 Score=33.96 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.9
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|+||.||+.|.|++.+..
T Consensus 57 ~~ts~~l~~L~p~t~Y~~~V~A~~ 80 (105)
T 2cum_A 57 GITSHQLLGLFPSTSYNARLQAMW 80 (105)
T ss_dssp SCSEEEECSCCTTCEEEEEEEEEB
T ss_pred CccEEEECCCCCCCEEEEEEEEEe
Confidence 445899999999999999999853
No 157
>3hn5_A Putative exported protein BF0290; YP_210027.1, structural genomics, joint center for S genomics, JCSG; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=73.75 E-value=14 Score=38.69 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=39.1
Q ss_pred eeEEeceEEEEEEEeCCCCce-----eceEEEE--c----ceee-eEeCCCceEEECcCCCccEEEEEEec
Q 001065 320 KFQVTGFSVGGRVVDENDMGV-----EGVKILV--D----GHER-SITDRDGYYKLDQVTSNRYTIEAVKV 378 (1167)
Q Consensus 320 ~f~~~g~sV~G~V~d~~G~pl-----~Ga~V~l--~----G~~~-~~TD~dG~y~~~~L~pG~Y~I~~~~~ 378 (1167)
++..+...+.|+|+. +|+|| .|+.|.| . ...+ .....||.|. ..|=.|+|.|.....
T Consensus 5 NYDeP~a~l~G~iv~-tGE~i~~~~~~gv~i~l~E~gy~~~~~~~~~v~qDGtf~-~~lF~G~Yki~~~~g 73 (215)
T 3hn5_A 5 NYDAPESMLTGRVMY-NGEALQLRGNEAVQLQLYQHGYAKHDPINVYVNQDGMYS-ANLFDGEYQMITKSG 73 (215)
T ss_dssp -----CEEEEEEEEE-TTEECCCCCTTSCEEEEESSCGGGCCCEEEEBCTTSEEE-EEECSEEEEEEECTT
T ss_pred CCCCCCceEEEEEEE-CCCEeeecCCCceEEEEEEcccCCCCCeeEEEcCCCcEE-EEEECceeEEEEecC
Confidence 344455679999994 46554 4588888 1 1222 4788999999 799999999998743
No 158
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens}
Probab=72.53 E-value=67 Score=33.82 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=24.6
Q ss_pred EeecCcc-eEEEcCCCCCCEEEEEEEeccCCC
Q 001065 978 TVTDTSG-SYRLRGLHPDTTYVIKVVKKDGFG 1008 (1167)
Q Consensus 978 ~~Td~~G-~~~i~gL~pg~~y~v~~~~~~~~~ 1008 (1167)
...+.++ .|.+.||.|++.|..++++.+..|
T Consensus 193 ~~v~~~~tsyt~~gLk~~TeYsF~V~A~d~~G 224 (238)
T 2w1n_A 193 AEIGKDETSYTFKKLNRHTIYNFKIAAKYSNG 224 (238)
T ss_dssp EEEETTCCEEEECSCCTTCEEEEEEEEEETTS
T ss_pred EEeeccceEEEecCCCCCCEEEEEEEEEeCCC
Confidence 3455555 799999999999999999875433
No 159
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=72.40 E-value=8.2 Score=36.57 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=33.3
Q ss_pred CCc-cCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCC
Q 001065 957 GQP-KDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFG 1008 (1167)
Q Consensus 957 g~p-~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~ 1008 (1167)
|.+ +-+-.|+..+.+........+-.+=.|.|.||+||+.|.++|++....|
T Consensus 47 g~~~I~~Y~ve~~~~~~~~~~~v~~~~~t~~~v~gL~p~t~Y~frV~A~n~~G 99 (120)
T 1wfu_A 47 PQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSG 99 (120)
T ss_dssp CGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEEEEEEECSSS
T ss_pred CCCceEEEEEEEecCCCCceEEEecCCccEEEECCCCCCCEEEEEEEEECCCC
Confidence 355 7788888433332222222233334699999999999999999864333
No 160
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=72.30 E-value=4.6 Score=38.39 Aligned_cols=44 Identities=20% Similarity=0.398 Sum_probs=33.8
Q ss_pred EEEEEEEcCCCCc--cCccEEEEEeCC------CCeeeEEeecCcceEEEcCC
Q 001065 947 SATGTITLLSGQP--KDGVSVEARSES------KGYYEETVTDTSGSYRLRGL 991 (1167)
Q Consensus 947 s~~G~V~~~~g~p--~~gv~v~~~~~~------~~~~~~~~Td~~G~~~i~gL 991 (1167)
.+.|++.. +|+| .++|.|++.+.+ .....+..||++|+|.|.|-
T Consensus 6 ~V~G~L~C-~~~Pa~~~~V~V~L~d~~~~~~d~Ddll~~~~Td~~G~F~l~G~ 57 (117)
T 3uaf_A 6 MATGVLKC-PTDPEAVKKVHIDLWDAAAAAAESDDLMGRTWSDRNGNFQVTGC 57 (117)
T ss_dssp EEEEEEEC-TTCGGGGSSCEEEEEEHHHHHTTSCCEEEEEECCTTSEEEEEEE
T ss_pred EEEEEEEe-CCccCCCCCEEEEEEecccccCCchHhheeeEECCCCEEEEEEE
Confidence 45677764 6777 458999988631 45788999999999999984
No 161
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=72.13 E-value=1.2e+02 Score=33.29 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=32.8
Q ss_pred CCCccCccEEEEEeCCC-Ce-eeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 956 SGQPKDGVSVEARSESK-GY-YEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~~-~~-~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
.|.|+.+-.|+.+..+. .. .........-.|.|.||.||+.|.+++.+...
T Consensus 319 ~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~ 371 (389)
T 2jll_A 319 GGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANR 371 (389)
T ss_dssp CSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-
T ss_pred CCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEEEEEEEcC
Confidence 35577787777764321 11 12223344567999999999999999998543
No 162
>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}
Probab=71.34 E-value=6.2 Score=36.96 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=38.0
Q ss_pred CcccceEEEEE-eCCCcEEEeEEecC-C-cEEE--eCCCCCccEEEEEEcC-CCcc
Q 001065 49 LDYSHVTVELR-TLDGLVKESTQCAP-N-GYYF--IPVYDKGSFVIKVNGP-EGWS 98 (1167)
Q Consensus 49 i~~sgv~v~L~-~~~G~~~~~t~t~~-n-G~y~--~~~l~~G~Y~l~~~~P-~G~~ 98 (1167)
-++..|+|++. +..|+++++-.... . .++. +..+.+|.|.|+++.+ .+|.
T Consensus 46 ~~~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~~~~~l 101 (108)
T 3d33_A 46 SPDRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGTPSGHL 101 (108)
T ss_dssp SCCSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEESSCEE
T ss_pred CcCCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeCCCCEE
Confidence 35669999999 57799998866633 3 3555 6777899999999988 6553
No 163
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A
Probab=70.74 E-value=31 Score=34.80 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.3
Q ss_pred cceEEEcCCCCCCEEEEEEEec
Q 001065 983 SGSYRLRGLHPDTTYVIKVVKK 1004 (1167)
Q Consensus 983 ~G~~~i~gL~pg~~y~v~~~~~ 1004 (1167)
.-.|.|.||.|++.|.+++.+.
T Consensus 69 ~~~~~i~~L~p~t~Y~~~V~A~ 90 (214)
T 2ibg_A 69 SFTASVTDLKPQHTYRFRILAV 90 (214)
T ss_dssp EEEEEECSCCTTCEEEEEEEEE
T ss_pred ceeEEecCCcCCCEEEEEEEEE
Confidence 3478999999999999999975
No 164
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=69.05 E-value=12 Score=33.44 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=22.8
Q ss_pred EeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 978 TVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 978 ~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
......-.|.|.||.||+.|.|++.+..
T Consensus 52 ~v~~~~t~~~l~~L~p~t~Y~v~V~A~~ 79 (97)
T 3qht_C 52 TVPGSSSTATISGLSPGVDYTITVYAYY 79 (97)
T ss_dssp EEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred EeCCCcCEEEeCCCCCCCEEEEEEEEEe
Confidence 3444566899999999999999999753
No 165
>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=68.61 E-value=9.5 Score=35.23 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=34.8
Q ss_pred CCccCccEEEEEeCCC-CeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 957 GQPKDGVSVEARSESK-GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 957 g~p~~gv~v~~~~~~~-~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
|.++.+-.|+....+. .......+...-.|.|.||.||+.|.++|.+..
T Consensus 47 g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n 96 (120)
T 2crm_A 47 GATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCIS 96 (120)
T ss_dssp SSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEEEEE
T ss_pred CCeeeEEEEEEccCCCCcCCEEEEeccccEEEECCCCCCCEEEEEEEEEc
Confidence 5678888888775542 122223334567899999999999999999754
No 166
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A
Probab=68.14 E-value=22 Score=31.95 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=29.6
Q ss_pred ccCccEEEEEeCCC--CeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSESK--GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~~--~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
++.+-.|+....++ ...+.......-.|.|+||.||+.|.|++.+..
T Consensus 33 ~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~~~V~A~~ 81 (101)
T 3k2m_C 33 SVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWG 81 (101)
T ss_dssp CCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred ceeeEEEEEEECCCCCccEEEEcCCCccEEEECCCCCCCEEEEEEEEEe
Confidence 34444555443321 122223333456899999999999999999753
No 167
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=68.09 E-value=14 Score=34.12 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=21.7
Q ss_pred ecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 980 TDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 980 Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.-..-.|.|+||.||+.|.|+|.+..
T Consensus 55 ~~~~t~~~l~~L~P~t~Y~~~V~A~~ 80 (115)
T 2cuh_A 55 PGSAVDYPLHDLVLHTNYTATVRGLR 80 (115)
T ss_dssp ETTCSEEEECSCCSSSEEEEEEEEEE
T ss_pred CCCccEEEEeCCCCCCEEEEEEEEEe
Confidence 33456899999999999999999754
No 168
>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=66.99 E-value=8.9 Score=34.87 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=34.4
Q ss_pred CCCccCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 956 SGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
+|.++.+-.|+....+.........-..-.|.|.||.||+.|.++|++...
T Consensus 37 ~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~ 87 (110)
T 2crz_A 37 GGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANK 87 (110)
T ss_dssp TTSCCCEEEEEEECTTSCCCEEEEEESCSEEEEESCCTTCEEEECCEEECS
T ss_pred CCceeEEEEEEEEeCCCCceEEEEeCCcEEEEECCcCCCCEEEEEEEEEcC
Confidence 356777777777644322222222334678999999999999999997543
No 169
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=66.72 E-value=25 Score=34.12 Aligned_cols=45 Identities=29% Similarity=0.478 Sum_probs=31.8
Q ss_pred CCCcceEEEEEeCCCcEEEEEE--eCCCceEEE--c-------cccCceEEEEEEc
Q 001065 146 GGPSNVNVELLSHSGDLISSVI--TSSEGSYLF--K-------NIIPGKYKLRASH 190 (1167)
Q Consensus 146 ~plaGv~V~L~~~~g~~i~~tt--Td~~G~f~f--~-------~l~pG~Y~l~~~~ 190 (1167)
.+...++|++++.+|+.+++.. .-+.|.+.| + .++||.|++++..
T Consensus 34 ~~a~~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~v~a 89 (138)
T 3osv_A 34 VSSSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQT 89 (138)
T ss_dssp BCEEEEEEEEECTTSCEEEEEEEEEECSEEEEEEECSBCTTSCBCCSEEEEEEEEE
T ss_pred CCCcEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCccEEEEEEE
Confidence 3456799999999998877643 236675555 3 4889999987743
No 170
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=66.61 E-value=19 Score=32.26 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=22.2
Q ss_pred eecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 979 VTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 979 ~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-..-.|.|.||.||+.|.+++.+..
T Consensus 50 ~~~~~t~~~i~~L~p~t~Y~~~V~A~n 76 (100)
T 3b83_A 50 LTSSITSLTLTNLEPNTTYEIRIVARN 76 (100)
T ss_dssp ECTTEEEEEECSCCTTCEEEEEEEEEE
T ss_pred ECCcceEEEECCCCCCCEEEEEEEEEe
Confidence 334556899999999999999999753
No 171
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A
Probab=66.22 E-value=24 Score=31.84 Aligned_cols=26 Identities=27% Similarity=0.662 Sum_probs=21.6
Q ss_pred ecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 980 TDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 980 Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.-..-.|.|+||.||+.|.|+|.+..
T Consensus 52 ~~~~~~~~l~~L~p~t~Y~~~V~A~~ 77 (104)
T 2rb8_A 52 TEDENQYSIGNLKPDTEYEVSLISRR 77 (104)
T ss_dssp ETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCcCEEEeCCCCCCCEEEEEEEEEe
Confidence 33456899999999999999999753
No 172
>2l4o_A Cell WALL surface anchor family protein; RRGB, pilus, cell adhesion; NMR {Streptococcus pneumoniae}
Probab=65.57 E-value=2.7 Score=43.10 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.4
Q ss_pred EeCCCceEEEcccc-Cce-EEEEEEcC
Q 001065 167 ITSSEGSYLFKNII-PGK-YKLRASHP 191 (1167)
Q Consensus 167 tTd~~G~f~f~~l~-pG~-Y~l~~~~~ 191 (1167)
+|+++| ..|.+++ .|. |.|.+.+.
T Consensus 103 ~T~~dG-~~F~~l~~~G~~Yl~vE~~~ 128 (181)
T 2l4o_A 103 LTEAEG-AKFNTANLPAAKYKIYEIHS 128 (181)
T ss_dssp ECCSSC-EEEECTTSCSSEEEEEECTT
T ss_pred eeCCCC-EEeecCccCCceEEEEEccC
Confidence 789999 9999998 899 99999764
No 173
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=65.57 E-value=20 Score=31.47 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.0
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-+|.|.||.||+.|.++|.+..
T Consensus 53 ~~~~~~l~~L~p~t~Y~~~V~A~~ 76 (94)
T 1j8k_A 53 EEDTAELQGLRPGSEYTVSVVALH 76 (94)
T ss_dssp SCCEEEECSCCCCSEEEEEEEECS
T ss_pred CccEEEeCCCCCCCEEEEEEEEEc
Confidence 356899999999999999999864
No 174
>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel, pilus assembly, outer-membrane, cell adhesion-T protein-chaperone complex; 2.80A {Escherichia coli} PDB: 3ohn_A 1zdv_A
Probab=65.46 E-value=33 Score=43.57 Aligned_cols=106 Identities=8% Similarity=0.104 Sum_probs=68.5
Q ss_pred EEeCCCCeEEEcccCCcc-EEEEEEEecCCeEEEecCceEEEEEeccceeeeeeeE-EeceEEEEEEEeCCCCcee-ceE
Q 001065 268 AVSDADGKFMFKSVPCGQ-YELVPHYKGENTVFDVSPSLVSMSVRHQHVTVPEKFQ-VTGFSVGGRVVDENDMGVE-GVK 344 (1167)
Q Consensus 268 ~~TD~~G~f~f~~LppG~-Y~v~~~~~~~~~~~~~~P~~~~vtV~~~~~~l~~~f~-~~g~sV~G~V~d~~G~pl~-Ga~ 344 (1167)
+.||..|.-.++.|.|=. -+|...-..-+...++.-....+....+.+... .|. ..+..+-.++.++ |+||+ ||.
T Consensus 692 ~~Td~~G~avvp~l~pY~~N~i~iD~~~Lp~dvel~~t~~~v~P~~GAvv~~-~F~~~~g~~~l~~l~~~-G~~lPfGa~ 769 (843)
T 3rfz_B 692 VRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRA-EFKARVGIKLLMTLTHN-NKPLPFGAM 769 (843)
T ss_dssp CBCCTTSEEEESCCCTTSCEEEEBCGGGSCTTEEESCSEEEECBCTTCEEEE-ECCEEESEEEEEEEEET-TEECCTTCE
T ss_pred ceECCCCeEEECCCCcccccEEEEcCCCCCCCEEEeccEEEEEECCCCEEEE-EEEEEeeEEEEEEEeeC-CCCCCCceE
Confidence 689999999999998743 344432111111223333334444444444332 354 2456677788899 99999 898
Q ss_pred EEE-cceeeeEeCCCceEEECcCCCccEEEEEE
Q 001065 345 ILV-DGHERSITDRDGYYKLDQVTSNRYTIEAV 376 (1167)
Q Consensus 345 V~l-~G~~~~~TD~dG~y~~~~L~pG~Y~I~~~ 376 (1167)
|.- +|+.+...+.+|..-+.+|+++. +|.++
T Consensus 770 V~~~~~~~~giVg~~G~vyl~gl~~~~-~L~V~ 801 (843)
T 3rfz_B 770 VTSESSQSSGIVADNGQVYLSGMPLAG-KVQVK 801 (843)
T ss_dssp EEESSSSCEEECCGGGEEEEEEECSEE-EEEEE
T ss_pred EEcCCCcEEEEEcCCCEEEEEcCCCCc-EEEEE
Confidence 876 46667899999999999998753 45554
No 175
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=65.02 E-value=14 Score=33.89 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=36.8
Q ss_pred eEEEEEEEeCCCCceeceEEEEcceeeeE-eCCCceEEECcCCCccEEEEEEec
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHERSI-TDRDGYYKLDQVTSNRYTIEAVKV 378 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~~~~-TD~dG~y~~~~L~pG~Y~I~~~~~ 378 (1167)
..|.+...|.+| .|..++|++||..+.+ |-+-=.|.+... +|.|+|.+++-
T Consensus 19 v~i~a~A~D~dg-~V~kVef~vdg~~vg~dt~apy~~~w~~~-~G~htl~a~At 70 (98)
T 3pe9_A 19 LKITATASDSDG-KISRVDFLVDGEVIGSDREAPYEYEWKAV-EGNHEISVIAY 70 (98)
T ss_dssp EEEEEEECCSSS-CEEEEEEEETTEEEEEECSSSEEEEEECC-SEEEEEEEEEE
T ss_pred EEEEEEEEeCCC-CEEEEEEEECCEEecccccCCEEEEEEcC-CccEEEEEEEE
Confidence 356677777655 7999999999988753 333335666555 89999999873
No 176
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=64.92 E-value=15 Score=33.22 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=33.1
Q ss_pred CCCccCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 956 SGQPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
+|.++.+-.|+....+.... .......-.|.|.||.|++.|.++|.+...
T Consensus 34 ~g~~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~ 83 (106)
T 1x4x_A 34 NGTDVTEYRLEWGGVEGSMQ-ICYCGPGLSYEIKGLSPATTYYCRVQALSV 83 (106)
T ss_dssp SSSCCCEEEEEEESSTTSCC-EEEEESCSEEEEESCCSSCEEEEEEEEECS
T ss_pred CCCcceEEEEEEEcCCCceE-EEEeCCcceEEEcCCCCCCEEEEEEEEEcC
Confidence 45567777776654332221 222334458999999999999999997543
No 177
>4fxt_A Uncharacterized protein; PF12866 family, DUF3823, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.77A {Bacteroides ovatus}
Probab=64.03 E-value=33 Score=35.66 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=37.4
Q ss_pred eceEEEEEEEeCCCCce----eceEEEE--cc-----eeeeEeCCCceEEECcCCCccEEEEEE
Q 001065 324 TGFSVGGRVVDENDMGV----EGVKILV--DG-----HERSITDRDGYYKLDQVTSNRYTIEAV 376 (1167)
Q Consensus 324 ~g~sV~G~V~d~~G~pl----~Ga~V~l--~G-----~~~~~TD~dG~y~~~~L~pG~Y~I~~~ 376 (1167)
+...+.|+|+. +|+|+ .|+.+.| .| ..-.....||.|. ..|=.|+|.|...
T Consensus 6 P~a~l~G~iv~-tgE~i~~~~~gv~i~l~e~g~~~~~~~~~~v~qDGtf~-~~lF~G~Yki~~~ 67 (202)
T 4fxt_A 6 PKATLTGKAIY-DGEAVGVRSGSSEFALFQDGYALKGSIPVYIAQDGSYS-VSLFNGDYKLVRM 67 (202)
T ss_dssp CEEEEEEEEEE-TTEECBCCTTTEEEEEECCC----CCEEEEBCTTSEEE-EEEESEEEEEEEE
T ss_pred CCceEEEEEEE-CCCEeeecCCceEEEEEEcccCCCCCeeEEEcCCCcEE-EEEEcceeEEEEC
Confidence 34578899984 46554 4788888 22 1224788999999 8999999999954
No 178
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1
Probab=63.74 E-value=12 Score=33.89 Aligned_cols=52 Identities=21% Similarity=0.338 Sum_probs=36.2
Q ss_pred cCCCCccCccEEEEEeCCCC-eeeE-Eee---cCcceEEEcCCCCCCEEEEEEEecc
Q 001065 954 LLSGQPKDGVSVEARSESKG-YYEE-TVT---DTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 954 ~~~g~p~~gv~v~~~~~~~~-~~~~-~~T---d~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..+|.|+.+-.|+....+.. .... ... ...-.|.|.||.||+.|.++|.+..
T Consensus 31 ~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n 87 (105)
T 2haz_A 31 ATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALN 87 (105)
T ss_dssp CCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEEEEE
T ss_pred ccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCEEEEEEEEEc
Confidence 46788899999988765422 1111 111 1346899999999999999999753
No 179
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}
Probab=63.71 E-value=42 Score=33.59 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=30.8
Q ss_pred ccCccEEEEEeCC--CCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSES--KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~--~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
++.+-.|+....+ ............-.|.|.||.||+.|.|++.+..
T Consensus 138 ~i~~Y~v~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~ 186 (201)
T 2ha1_A 138 TVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQIS 186 (201)
T ss_dssp TEEEEEEEEEETTTCCCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CccEEEEEEEECCCCCceeEEEcCCceeEEEeCCCCCCCEEEEEEEEEc
Confidence 4555555555332 2223333444557899999999999999999753
No 180
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=62.74 E-value=12 Score=35.49 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=35.6
Q ss_pred eEEeeEEEeCCCce--eceEEEEEECCCCcccCCCCCCCcccccceeeEEEeCCCCeEEEccc
Q 001065 221 YEIRGLVVAQGNPI--LGVHIYLYSDDVGKVDCPQGSGNALGERKALCHAVSDADGKFMFKSV 281 (1167)
Q Consensus 221 ~~isG~V~~~g~Pl--~Ga~V~L~~~~~~~~~c~~g~~~~~~~g~~~~~~~TD~~G~f~f~~L 281 (1167)
..|.|++.-.++|. .+|.|.|+..+... ...-..+..+.||++|+|.+.+-
T Consensus 5 V~V~G~L~C~~~Pa~~~~V~V~L~d~~~~~----------~d~Ddll~~~~Td~~G~F~l~G~ 57 (117)
T 3uaf_A 5 LMATGVLKCPTDPEAVKKVHIDLWDAAAAA----------AESDDLMGRTWSDRNGNFQVTGC 57 (117)
T ss_dssp EEEEEEEECTTCGGGGSSCEEEEEEHHHHH----------TTSCCEEEEEECCTTSEEEEEEE
T ss_pred EEEEEEEEeCCccCCCCCEEEEEEeccccc----------CCchHhheeeEECCCCEEEEEEE
Confidence 35789998888885 48999999732100 00012467899999999999753
No 181
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=62.56 E-value=16 Score=33.93 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=23.1
Q ss_pred eEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 976 EETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 976 ~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
+.......-.|.|+||.||+.|.|++.+..
T Consensus 62 ~~~v~~~~t~~~l~gL~PgT~Y~~~V~A~~ 91 (112)
T 2cui_A 62 ELMVPGTRHSAVLRDLRSGTLYSLTLYGLR 91 (112)
T ss_dssp EEEEETTCCEEEECSCCTTCEEEEEEEEEC
T ss_pred EEEcCCCcCEEEeCCCCCCCEEEEEEEEEE
Confidence 333434445899999999999999999753
No 182
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=62.39 E-value=40 Score=40.41 Aligned_cols=110 Identities=18% Similarity=0.117 Sum_probs=57.5
Q ss_pred CCceEEEecCCCcceE-Ee--eccCcccc--CCCceeEEec--CCcEEEEEEEEEeeeEEEEEEEE--cCCCCccCccEE
Q 001065 895 AGGSFHFDNLFPGNFY-LR--PLLKEYAF--SPPAQAIELG--SGESREVIFQATRVAYSATGTIT--LLSGQPKDGVSV 965 (1167)
Q Consensus 895 ~~G~~~f~~L~PG~Y~-~~--~~~key~~--~p~~~~i~v~--~G~~~~v~~~~~r~~~s~~G~V~--~~~g~p~~gv~v 965 (1167)
..-.+.+.+|.|++-| |+ +.-..=.. .+.+..+.+. ++....+.+ ......++.=+=. ...+.++.+-.|
T Consensus 398 ~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~Ps~~~~-~~~s~tSV~LsW~pP~~~ng~I~~Y~V 476 (536)
T 3fl7_A 398 TRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRL-EGRSTTSLSVSWSIPPPQQSRVWKYEV 476 (536)
T ss_dssp CSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCCCEEEE-EECCC-CCEEEEECCTTTTTTCSEEEE
T ss_pred ccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeecccCCCCCce-eeccCCeEEEEEECCcCCCCcccEEEE
Confidence 3457889999999866 44 33221112 2344444444 333233332 1111111111111 122345667777
Q ss_pred EEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 966 EARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 966 ~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
+....+.........-..-.|.|+||.||+.|.++|.+..
T Consensus 477 ~y~~~~~~~~~~~v~~~~ts~~l~gL~P~T~Y~frVrA~n 516 (536)
T 3fl7_A 477 TYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALT 516 (536)
T ss_dssp EEEEC--CCCCEEEEESSSEEECCSCCSSCEEEEEEEEEC
T ss_pred EEEECCCCceEEEEcCCCCEEEECCCCCCCEEEEEEEEEc
Confidence 7665432222223334456899999999999999999754
No 183
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A
Probab=62.29 E-value=1.3e+02 Score=30.01 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=21.6
Q ss_pred ecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 980 TDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 980 Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
....-.|.|.||.|++.|.+++.+..
T Consensus 60 ~~~~~~~~i~~L~p~t~Y~~~V~A~n 85 (211)
T 3p4l_A 60 NATTLSYLVTGLKPNTLYEFSVMVTK 85 (211)
T ss_dssp EESSSEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCceEEEecCcCCCCEEEEEEEEEc
Confidence 33455899999999999999999754
No 184
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.18 E-value=8.5 Score=35.31 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCccCccEEEEEeCC-CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 957 GQPKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 957 g~p~~gv~v~~~~~~-~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
|.++.+-.|+....+ ..... ..+..+-.|.|+||.|++.|.++|++...
T Consensus 38 ~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~v~~L~p~t~Y~frV~A~n~ 87 (110)
T 2db8_A 38 TVPADGYILELDDGNGGQFRE-VYVGKETMCTVDGLHFNSTYNARVKAFNK 87 (110)
T ss_dssp CSCCSEEEEEECCSSSSCCEE-EEEESCSCEEEECCCSSSCCEEEEEEECS
T ss_pred CCCccEEEEEEEeCCCCceEE-EEeCCcCEEEECCCCCCCEEEEEEEEEeC
Confidence 345555555554332 12222 22335568999999999999999997543
No 185
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.90 E-value=14 Score=33.41 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=31.7
Q ss_pred CCccCccEEEEEeCCCCeeeEEee--cCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 957 GQPKDGVSVEARSESKGYYEETVT--DTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 957 g~p~~gv~v~~~~~~~~~~~~~~T--d~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
|.++.+-.|+....+......... -..-.|.|.||.||+.|.++|.+...
T Consensus 36 ~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~ 87 (110)
T 2yuw_A 36 AAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNA 87 (110)
T ss_dssp SSCEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEEEEET
T ss_pred CCCccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEEEEcC
Confidence 456666666666443211111111 24557999999999999999998543
No 186
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Probab=60.28 E-value=20 Score=33.28 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=29.8
Q ss_pred ccCccEEEEEeCCCC--eeeEEeecCcceEEEcCCCCCCEEEEEEEec
Q 001065 959 PKDGVSVEARSESKG--YYEETVTDTSGSYRLRGLHPDTTYVIKVVKK 1004 (1167)
Q Consensus 959 p~~gv~v~~~~~~~~--~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~ 1004 (1167)
++.+-.|+....+.. ..+.......-.|.|.||.||+.|.|++.+.
T Consensus 30 ~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~gL~P~T~Y~v~V~A~ 77 (114)
T 3qwq_B 30 SYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYAV 77 (114)
T ss_dssp CCSEEEEEEEESSCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred cccEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence 345555555543321 2233333445689999999999999999975
No 187
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Probab=59.74 E-value=31 Score=34.98 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=29.4
Q ss_pred ccCccEEEEEeCCCCeeeEE----eecCcceEEEcCCCCCCEEEEEEEec
Q 001065 959 PKDGVSVEARSESKGYYEET----VTDTSGSYRLRGLHPDTTYVIKVVKK 1004 (1167)
Q Consensus 959 p~~gv~v~~~~~~~~~~~~~----~Td~~G~~~i~gL~pg~~y~v~~~~~ 1004 (1167)
++-+-.|+.+..+....... .....-.|.|.||.||+.|.++|++.
T Consensus 135 ~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~ 184 (215)
T 1bqu_A 135 IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCM 184 (215)
T ss_dssp SCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEEEE
T ss_pred ceEEEEEEEccCCCCCceEeccccccCccceEEeCCCCCCCEEEEEEEEc
Confidence 45556666665432111111 12234589999999999999999975
No 188
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.38 E-value=10 Score=34.44 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.5
Q ss_pred eEEEcCCCCCCEEEEEEEecc
Q 001065 985 SYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 985 ~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.|.|+||+||+.|.|+|.+..
T Consensus 62 ~~~l~~L~p~t~Y~~~V~A~~ 82 (104)
T 2dkm_A 62 EVLLDGLEPGRDYEVSVQSLR 82 (104)
T ss_dssp EEEEESCCTTCCEEEEEEEEC
T ss_pred EEEECCCCCCCEEEEEEEEEC
Confidence 999999999999999999863
No 189
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=58.92 E-value=67 Score=28.97 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCCcc--eEEEEEeCCCcEEEE--EEeCCCceEEEc-----cccCceEEEEEEcC
Q 001065 146 GGPSN--VNVELLSHSGDLISS--VITSSEGSYLFK-----NIIPGKYKLRASHP 191 (1167)
Q Consensus 146 ~plaG--v~V~L~~~~g~~i~~--ttTd~~G~f~f~-----~l~pG~Y~l~~~~~ 191 (1167)
.|+.+ +.|+|.+.+|..+.. ..++.+|.|.++ +.+.|.|+|++...
T Consensus 31 ~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~ 85 (102)
T 2p9r_A 31 HPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKK 85 (102)
T ss_dssp CBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECT
T ss_pred cCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEEC
Confidence 34443 478899999976654 567888887664 33569999999764
No 190
>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=58.74 E-value=18 Score=32.59 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCCccCccEEEEEeCCC--CeeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 956 SGQPKDGVSVEARSESK--GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~~--~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
+|.++.+-.|+....+. ...... .-.+-.|.|.||.|++.|.++|.+...
T Consensus 35 ~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~v~~L~p~t~Y~frV~A~n~ 86 (109)
T 1x5x_A 35 PSDEGISYILEMEEETSGYGFKPKY-DGEDLAYTVKNLRRSTKYKFKVIAYNS 86 (109)
T ss_dssp CSSSSCEEEEEECCSSSSCCCEEEE-EESCSEEEEESCCSSCEEEEEEEEECS
T ss_pred CCCcccEEEEEEecCCCCcceEEeE-eCCccEEEECCCCCCCEEEEEEEEEeC
Confidence 34577777777664432 222222 233568999999999999999998643
No 191
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}
Probab=58.32 E-value=20 Score=32.18 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.1
Q ss_pred cceEEEcCCCCCCEEEEEEEecc
Q 001065 983 SGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 983 ~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
+-.|.|.||.|++.|.++|.+..
T Consensus 62 ~~~~~l~~L~p~t~Y~~~V~A~n 84 (108)
T 2dm4_A 62 SNFTEIKNLLVNTLYTVRVAAVT 84 (108)
T ss_dssp SSEEEECSCCSSCEEEEEEEEEE
T ss_pred ccEEEeCCCCCCCEEEEEEEEEC
Confidence 34999999999999999999753
No 192
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=58.25 E-value=20 Score=33.21 Aligned_cols=54 Identities=22% Similarity=0.395 Sum_probs=36.2
Q ss_pred CCCCccCccEEEEEeCCCC-eeeEE-eecCcceEEEcCCCCCCEEEEEEEeccCCC
Q 001065 955 LSGQPKDGVSVEARSESKG-YYEET-VTDTSGSYRLRGLHPDTTYVIKVVKKDGFG 1008 (1167)
Q Consensus 955 ~~g~p~~gv~v~~~~~~~~-~~~~~-~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~ 1008 (1167)
.+|.|+.+-.|+....+.. ...-. ..-..-.|.|.||.||+.|.++|.+....|
T Consensus 37 ~gg~~i~~Y~Ve~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G 92 (112)
T 1bpv_A 37 TGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAG 92 (112)
T ss_dssp CTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEECTTS
T ss_pred CCCCcccEEEEEEEECCCCceEEeecccCccCEEEECCCCCCCEEEEEEEEEECCC
Confidence 3567889999988765322 11111 112345799999999999999999864333
No 193
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=57.87 E-value=26 Score=31.22 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=30.0
Q ss_pred ccCccEEEEEeCC-CCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~-~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
++-+-.|+....+ .........-..-+|.|.||.|++.|.+++.+..
T Consensus 36 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 83 (107)
T 2dn7_A 36 ELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKN 83 (107)
T ss_dssp CCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEE
T ss_pred ceeEEEEEEEECCCCCCEEEEeCCCccEEEeCCCCCCCEEEEEEEEEc
Confidence 3555555555333 2222223334455899999999999999999753
No 194
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}
Probab=57.68 E-value=24 Score=31.13 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=31.0
Q ss_pred ccCccEEEEEeCC--CCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSES--KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~--~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
++.+-.|+....+ .........-..-.|.|.||.||+.|.+++.+..
T Consensus 28 ~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 76 (98)
T 3teu_A 28 TITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALK 76 (98)
T ss_dssp CCSEEEEEEEETTSCSCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred cccEEEEEEEECCCCCceEEEEcCCCcCEEEecCCCCCCEEEEEEEEEe
Confidence 4555566555322 2223333444566899999999999999999753
No 195
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=57.42 E-value=38 Score=30.41 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=22.3
Q ss_pred eecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 979 VTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 979 ~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-..=.|.|+||.||+.|.|++.+..
T Consensus 59 v~~~~ts~~l~~L~p~t~Y~~~V~A~~ 85 (103)
T 3t04_D 59 VPGYYSTATISGLKPGVDYTITVYAYD 85 (103)
T ss_dssp EETTCCEEEECSCCTTCCEEEEEEEES
T ss_pred cCCCcCEEEeCCCCCCCEEEEEEEEEe
Confidence 333456899999999999999999863
No 196
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.11 E-value=26 Score=31.25 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=30.1
Q ss_pred ccCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
++.+-.|+....+........++ .-.|.|.||.|++.|.+++.+..
T Consensus 37 ~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~i~~L~p~t~Y~~~V~A~n 82 (106)
T 2ed8_A 37 PVQGYRLFCTEVSTGKEQNIEVD-GLSYKLEGLKKFTEYSLRFLAYN 82 (106)
T ss_dssp CCCEEEEEEEETTTCCEEEEEEC-SSCEEEESCCTTCEEEEEEEEEC
T ss_pred CeeEEEEEEEECCCCceEEEeCC-ccEEEECCCCCCCEEEEEEEEEe
Confidence 55566666554432111122233 57899999999999999999754
No 197
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Probab=55.44 E-value=1.8e+02 Score=29.57 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=65.8
Q ss_pred ccCccEEEEEeCC-CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEec---CcccccceE
Q 001065 959 PKDGVSVEARSES-KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVG---SGDIKGLDF 1034 (1167)
Q Consensus 959 p~~gv~v~~~~~~-~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~---~~d~~~~~f 1034 (1167)
++.+-.|+....+ ............-.|.|.||.|++.|.+++.+....|.. . ....+.+... +.-..++..
T Consensus 32 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g---~-~s~~~~~~T~~~~P~~P~~l~~ 107 (234)
T 3f7q_A 32 KPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEG---P-YSSLVSCRTHQEVPSEPGRLAF 107 (234)
T ss_dssp CCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEEETTEEC---C-CCCCEEEECCCCCCCCCCCCEE
T ss_pred ccceEEEEEEECCCCccceEEEcCCccEEEECCCCCCCEEEEEEEEEeCCCcC---C-CCCeEEEEcCCCCCCCCCccEE
Confidence 4556666655432 111222334556689999999999999999975322211 0 0112222211 112244444
Q ss_pred EEEecCCeEEEEEEEEecc-cccccceeEEEEEecCCCC----ceEEEEee-C-CceeEEeccCCCC-cEEEEEEe
Q 001065 1035 LVFEQPEKTILSGHVEGNR-IKELNSHLLVEIKSASDTS----KVESVISL-P-MSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1035 ~~~~~~~~~~i~g~V~~~~-~~~~~~~l~v~l~~~~~~~----~v~~~~~~-~-~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
.... ...+.|+ =.... ....+....|..+..++.. .... +.. + ....|.+..|.++ .|.+++..
T Consensus 108 ~~~~-~~sv~l~--W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A 179 (234)
T 3f7q_A 108 NVVS-STVTQLS--WAEPAETNGEITAYEVCYGLVNDDNRPIGPMKK-VLVDNPKNRMLLIENLRESQPYRYTVKA 179 (234)
T ss_dssp EECS-SSCEEEE--CCCCSCCSSCCCEEEEEEEEBCTTSCBSSCCEE-CCCSCTTCCEEEEECCCTTCCEEEEEEE
T ss_pred EEec-CCEEEEE--EcCCCCCCCceeEEEEEEEECCCCCCccCcceE-EEecCCcceEEEeCCCCCCCeEEEEEEE
Confidence 4331 1212121 11110 0112335566666544321 1122 222 2 2357889999988 68888875
No 198
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A
Probab=55.02 E-value=26 Score=31.71 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=24.7
Q ss_pred eeEEeecCcceEEEcCCCCCCEEEEEEEec
Q 001065 975 YEETVTDTSGSYRLRGLHPDTTYVIKVVKK 1004 (1167)
Q Consensus 975 ~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~ 1004 (1167)
++.......-++.|+||.||..|.|.+.+.
T Consensus 50 ~~~~v~g~~~s~~l~~L~PgT~Y~V~v~a~ 79 (95)
T 2h41_A 50 QYLDLPSTATSVNIPDLLPGRKYIVNVYQI 79 (95)
T ss_dssp EEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred eEEECCCCccEEEECCCCCCCEEEEEEEEE
Confidence 344555667889999999999999999974
No 199
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1
Probab=54.77 E-value=25 Score=32.31 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=34.8
Q ss_pred CCCCccCccEEEEEeCC--CCe--eeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 955 LSGQPKDGVSVEARSES--KGY--YEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 955 ~~g~p~~gv~v~~~~~~--~~~--~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
.+|.|+.+-.|+..... ... ......-..-.|.|.||.||..|.++|.+...
T Consensus 43 ~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~ 98 (121)
T 1x4z_A 43 NGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNM 98 (121)
T ss_dssp CTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEEEEET
T ss_pred CCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECCCCCCCEEEEEEEEEcC
Confidence 35667788888777543 211 11122234568999999999999999997543
No 200
>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}
Probab=54.73 E-value=28 Score=31.95 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=36.5
Q ss_pred cccceEEEEEeC-CCcEEEeEEecCCcEEE--eCCCCCccEEEEEEcCCCcc
Q 001065 50 DYSHVTVELRTL-DGLVKESTQCAPNGYYF--IPVYDKGSFVIKVNGPEGWS 98 (1167)
Q Consensus 50 ~~sgv~v~L~~~-~G~~~~~t~t~~nG~y~--~~~l~~G~Y~l~~~~P~G~~ 98 (1167)
.+..|+|.+.+. .|..+++-+-..-..+. +..-.+|.|+|++....+|.
T Consensus 43 ~~~~vTItItNe~TG~~VYs~~~s~p~~i~IdLnge~sG~Y~IeI~~~~~~L 94 (101)
T 3sd2_A 43 AKDYAIITVTNKATGEIVHSKTYHNTSIVMIDMSSCEKGEYTIHIILNDCLL 94 (101)
T ss_dssp CCSCEEEEEEETTTCCEEEEEEESSCSEEEEECTTSCSEEEEEEEEETTEEE
T ss_pred CCCcEEEEEEECCCCcEEEEEeccCCcEEEEEcCCCcCceEEEEEEeCCcEE
Confidence 466999999997 59999885332222344 66777999999999988663
No 201
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=53.75 E-value=22 Score=34.48 Aligned_cols=44 Identities=25% Similarity=0.483 Sum_probs=31.9
Q ss_pred CCcceEEEEEeCCCcEEEEEE--eCCCceEEEc--c-------ccCceEEEEEEc
Q 001065 147 GPSNVNVELLSHSGDLISSVI--TSSEGSYLFK--N-------IIPGKYKLRASH 190 (1167)
Q Consensus 147 plaGv~V~L~~~~g~~i~~tt--Td~~G~f~f~--~-------l~pG~Y~l~~~~ 190 (1167)
+...++|++++.+|+.+++.. .-+.|.+.|. . ++||.|++++..
T Consensus 37 ~a~~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a 91 (138)
T 3c12_A 37 SAGFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQ 91 (138)
T ss_dssp SSEEEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEE
Confidence 456789999998998776643 4567776665 2 788999888753
No 202
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.67 E-value=33 Score=31.43 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=31.8
Q ss_pred CccCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 958 QPKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 958 ~p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.++.+-.|+....+.........-..-.|.|.||.|++.|.+++.+..
T Consensus 59 g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 106 (124)
T 2ed9_A 59 GFITGYKIRHRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMT 106 (124)
T ss_dssp SCCCEEEEEEEESSSSCCEEEECSSCSEEEEECCCSSCEEEECEEEEC
T ss_pred cEEeEEEEEEEECCCCcceEEecCCcCEEEEcCCCCCCEEEEEEEEEc
Confidence 356666666664432211122344556899999999999999999754
No 203
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=53.65 E-value=26 Score=31.95 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=31.9
Q ss_pred ccCccEEEEEeCCC-C-eeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSESK-G-YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~~-~-~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
++.+-.|+....+. . ..........-.|.|+||.|++.|.++|.+..
T Consensus 48 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 96 (120)
T 1x5f_A 48 DNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQN 96 (120)
T ss_dssp CSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEEEC
T ss_pred cEEEEEEEEEECCCCCceEEEeccCCccEEEeCCCCCCCEEEEEEEEEC
Confidence 67777777665431 1 11222223467899999999999999999754
No 204
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=53.46 E-value=13 Score=33.83 Aligned_cols=47 Identities=19% Similarity=0.418 Sum_probs=29.9
Q ss_pred ccCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
++.+-.|+....+............-.|.|.||.|++.|.+++++..
T Consensus 45 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 91 (115)
T 1x5z_A 45 TIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARS 91 (115)
T ss_dssp CCCEEEECBEESSSCCCBCCEECSSSEEEEECCCTTCEEEECEEEEC
T ss_pred CccEEEEEEEeCCCCCceEEecCCCcEEEECCCCCCCeEEEEEEEEC
Confidence 45555555554331111122233457899999999999999999753
No 205
>2l4o_A Cell WALL surface anchor family protein; RRGB, pilus, cell adhesion; NMR {Streptococcus pneumoniae}
Probab=52.64 E-value=8.4 Score=39.42 Aligned_cols=48 Identities=6% Similarity=0.120 Sum_probs=34.1
Q ss_pred cccceEEEEEeCCCcEE------------------Ee--------EEecCCcEEEeCCCC-Ccc-EEE-EEEcCCCcc
Q 001065 50 DYSHVTVELRTLDGLVK------------------ES--------TQCAPNGYYFIPVYD-KGS-FVI-KVNGPEGWS 98 (1167)
Q Consensus 50 ~~sgv~v~L~~~~G~~~------------------~~--------t~t~~nG~y~~~~l~-~G~-Y~l-~~~~P~G~~ 98 (1167)
.|.||+|+++...+.+. .. ..|+.+| ..|..++ .|. |.+ +...|.+|.
T Consensus 57 ~L~GV~F~v~kv~~~l~~d~~~~~~~~~~~~~~~~~~g~~a~~~~~~T~~dG-~~F~~l~~~G~~Yl~vE~~~ps~~~ 133 (181)
T 2l4o_A 57 EIAGVMFVWTNTNNEIIDENGQTLGVNIDPQTFKLSGAMPATAMKKLTEAEG-AKFNTANLPAAKYKIYEIHSLSTYV 133 (181)
T ss_dssp ECSCCEEEEEETTCEEECTTSCEEEEEBCTTTCCBSSSCCSSCCEEECCSSC-EEEECTTSCSSEEEEEECTTSCCCS
T ss_pred ecCCcEEEEEeccchhccCcccccccccccccccccccccccccceeeCCCC-EEeecCccCCceEEEEEccCCCccc
Confidence 47899999997653110 00 1567799 7788877 799 999 677787765
No 206
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=50.09 E-value=36 Score=31.82 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.5
Q ss_pred cCcceEEEcCCCCCCEEEEEEEecc
Q 001065 981 DTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 981 d~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
-..-.|.|.||.||+.|.|+|.+..
T Consensus 79 ~~~t~~~l~gL~P~t~Y~~~V~A~~ 103 (121)
T 2ocf_D 79 GSKSTATISGLKPGVDYTITVYAVT 103 (121)
T ss_dssp TTCCEEEECCCCTTCEEEEEEEEEC
T ss_pred CCcCEEEeCCCCCCCEEEEEEEEEe
Confidence 3456899999999999999999854
No 207
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Probab=50.07 E-value=2e+02 Score=28.41 Aligned_cols=138 Identities=18% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCCccCccEEEEEeCC--CCe--eeEEeecCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCc--eEEEEecC---
Q 001065 956 SGQPKDGVSVEARSES--KGY--YEETVTDTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPE--SVTVKVGS--- 1026 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~--~~~--~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~--~~~v~v~~--- 1026 (1167)
++.++.+-.|+..... +.. .........-.|.+ ||.|++.|.+++.+....|. ..|. ...+....
T Consensus 31 ~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~~V~A~n~~G~-----~~~s~~~~~~~T~~~~P 104 (205)
T 1cfb_A 31 NRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTFRVIAFNKIGA-----SPPSAHSDSCTTQPDVP 104 (205)
T ss_dssp TTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEEEEEEEETTEE-----CCCCCCCCCEEECCCCC
T ss_pred CCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEEEEEEEECCcc-----CCCCCCceeEEcCCcCC
Confidence 4567777777776442 111 11222233446777 99999999999997533221 1111 12222111
Q ss_pred -cccccceEEEEecCCeEEEEEEEEecc---cccccceeEEEEEecCCCCceEE-EEeeCCceeEEeccCCCC-cEEEEE
Q 001065 1027 -GDIKGLDFLVFEQPEKTILSGHVEGNR---IKELNSHLLVEIKSASDTSKVES-VISLPMSNFFQVKDLPKG-KHLLQL 1100 (1167)
Q Consensus 1027 -~d~~~~~f~~~~~~~~~~i~g~V~~~~---~~~~~~~l~v~l~~~~~~~~v~~-~~~~~~~~~f~~~~l~~~-~y~v~l 1100 (1167)
.--.++...... ...+.|+ =.... ..-.+-.-.|..+..+....... ...-.....|.+..|.++ .|.+++
T Consensus 105 ~~~P~~~~~~~~~-~~sv~l~--W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 181 (205)
T 1cfb_A 105 FKNPDNVVGQGTE-PNNLVIS--WTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKV 181 (205)
T ss_dssp SCCCSCCEEECSS-TTCEEEE--CCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEE
T ss_pred CCCCeeeEeecCC-CCeEEEE--EECCCccccCCCceEEEEEEEECCCCCCcEEEEecCCCccEEEEcCCCCCcEEEEEE
Confidence 112233322221 1112111 11110 00123355666655544332222 122224567899999998 598888
Q ss_pred Ee
Q 001065 1101 RS 1102 (1167)
Q Consensus 1101 ~s 1102 (1167)
..
T Consensus 182 ~A 183 (205)
T 1cfb_A 182 VA 183 (205)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 208
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.67 E-value=30 Score=30.54 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=33.3
Q ss_pred CCCccCccEEEEEeCCCC-eeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 956 SGQPKDGVSVEARSESKG-YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~~~-~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
++.++.+-.|+....+.. ..........-.|.|.||.|++.|.++|.+...
T Consensus 32 ~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~ 83 (106)
T 2dju_A 32 NSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNS 83 (106)
T ss_dssp CSSCCSEEEEEEEETTCCSCCCCBCCCCSSEEEEESCCTTCEEEEEEEEECS
T ss_pred CCCCceEEEEEEEECCCCCCeEEccCCCccEEEEeCCCCCcEEEEEEEEEeC
Confidence 456677777777654321 111112224557999999999999999997543
No 209
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A
Probab=49.53 E-value=51 Score=35.50 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=29.6
Q ss_pred ccCccEEEEEeCCCCeeeEEe----ecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSESKGYYEETV----TDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~~~~~~~~~----Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
++-+-.|+.+..+........ .-..-.|.|.||.|++.|.++|++..
T Consensus 231 ~i~~Y~v~y~~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n 281 (303)
T 1i1r_A 231 IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMK 281 (303)
T ss_dssp SCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEE
T ss_pred ccEEEEEEEEeCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEecc
Confidence 455666666654321111111 22345899999999999999999753
No 210
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}
Probab=49.46 E-value=27 Score=32.40 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=32.5
Q ss_pred CCCCccCccEEEEEeCCC-Ce-e--eE-EeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 955 LSGQPKDGVSVEARSESK-GY-Y--EE-TVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 955 ~~g~p~~gv~v~~~~~~~-~~-~--~~-~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.+|.|+.+-.|+....+. .. . .. .+.-..-.|.|.||.|++.|.++|.+..
T Consensus 33 ~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n 88 (122)
T 2e3v_A 33 TGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALN 88 (122)
T ss_dssp C--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTCEEEEEEEEEE
T ss_pred CCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCCEEEEEEEEEe
Confidence 566777888887765432 11 1 10 1112345899999999999999999753
No 211
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Probab=49.27 E-value=31 Score=35.65 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=19.6
Q ss_pred ceEEEcCCCCCCEEEEEEEecc
Q 001065 984 GSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 984 G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
-.|.|.||.||+.|.++|.+..
T Consensus 160 ~~~~i~~L~p~t~Y~~~V~A~n 181 (234)
T 3f7q_A 160 RMLLIENLRESQPYRYTVKARN 181 (234)
T ss_dssp CEEEEECCCTTCCEEEEEEEEE
T ss_pred eEEEeCCCCCCCeEEEEEEEEC
Confidence 4899999999999999999753
No 212
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=49.04 E-value=29 Score=31.11 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=20.7
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|+||.|++.|.+++++..
T Consensus 64 ~~~~~~i~~L~p~t~Y~~~V~A~n 87 (111)
T 1x5l_A 64 VTTRATVSGLKPGTRYVFQVRART 87 (111)
T ss_dssp SSSEEEECSCCTTCEEEECEEEEE
T ss_pred CCCEEEEcCCCCCCEEEEEEEEEe
Confidence 456899999999999999999753
No 213
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=48.56 E-value=37 Score=30.72 Aligned_cols=49 Identities=27% Similarity=0.385 Sum_probs=30.8
Q ss_pred CCccCccEEEEEeCC-C-CeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 957 GQPKDGVSVEARSES-K-GYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 957 g~p~~gv~v~~~~~~-~-~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
+.++.+-.|+....+ . ....-...-..-.|.|.||.||+.|.++|.+..
T Consensus 43 ~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n 93 (117)
T 1uem_A 43 TLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAIN 93 (117)
T ss_dssp SSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEEEEEEEE
T ss_pred CcCceEEEEEEEECCCCCceeEcccccCcCEEEECCCCCCCEEEEEEEEEC
Confidence 445556666655432 1 111111222456899999999999999999754
No 214
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=48.39 E-value=23 Score=35.25 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=45.2
Q ss_pred CCcEEEccc---CCccEEEEEEeecccccccCCCceEE----eeeEEEEEecCCccceeEEEeeeEEEEEecccEEEEEE
Q 001065 535 SDQFLFRDV---LPGKYRLEVKRTSREASSMEDNWCWE----QSFIGVDVGTNDVKGVEFVQKGYWLNVISTHDVDAYMT 607 (1167)
Q Consensus 535 ~G~f~f~~L---~PG~Y~v~~~~~~~~~~~~~~~~cw~----~~~~~v~V~~~~~~~~~F~q~Gy~~~i~~sh~~~~~~~ 607 (1167)
++..+|.+| ..|.|.|.++.+..+... .|-|. .....|.|.......+.|-.+|-|-.
T Consensus 46 ~~~vtf~~V~~~~aG~Y~l~irYang~~~~---~~~y~~~~~~r~~~v~VNG~~~~~v~fp~Tg~W~~------------ 110 (156)
T 2wz8_A 46 NNYLQFNNVYVPQAGTYRMVVQFANAEVFG---QHSYNNNVVDRYCSISVNGGPEKGHYFFNTRGWNT------------ 110 (156)
T ss_dssp TSCEEEEEEEESSCEEEEEEEEEECCCBC----------CBCCEEEEEEETTCCCEEEEECCCSSTTC------------
T ss_pred CCEEEEEEEecCCCcEEEEEEEEECCCccc---ccccCCccCcceEEEEECCceeeEEEeCCCCCCCc------------
Confidence 345555544 379999999987322211 13333 45668888766655667766552210
Q ss_pred ecCCCeeeEEEccceeeEEecCC
Q 001065 608 QQDGSHVPLKVKKGSQHICVESP 630 (1167)
Q Consensus 608 ~~~~~~~~~~l~kG~~~~c~~~~ 630 (1167)
.....+.+.|++|.|.|.+...
T Consensus 111 -~~~~tv~V~L~aG~NtI~~~~~ 132 (156)
T 2wz8_A 111 -YRTDIIDVYLNAGNNTIRFYNG 132 (156)
T ss_dssp -CEEEEEEEEECSEEEEEEEECC
T ss_pred -ceEEEEEEEECCCceEEEEEec
Confidence 0011335789999999988543
No 215
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=48.35 E-value=48 Score=29.98 Aligned_cols=43 Identities=14% Similarity=0.018 Sum_probs=30.7
Q ss_pred ceEEEEEeCCCcEEEeE--EecCCcEEE----eCC-CCCccEEEEEEcCC
Q 001065 53 HVTVELRTLDGLVKEST--QCAPNGYYF----IPV-YDKGSFVIKVNGPE 95 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t--~t~~nG~y~----~~~-l~~G~Y~l~~~~P~ 95 (1167)
-++|+|.|++|+.+.+. .++.+|.|. +|. ...|.|.|++....
T Consensus 37 ~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~ 86 (102)
T 2p9r_A 37 IPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS 86 (102)
T ss_dssp EEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred ceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence 46899999999988773 344577554 332 35799999988754
No 216
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.29 E-value=39 Score=31.06 Aligned_cols=24 Identities=21% Similarity=0.384 Sum_probs=20.6
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|.||.|++.|.++|.+..
T Consensus 69 ~~~~~~l~~L~p~t~Y~~~V~A~n 92 (116)
T 2edb_A 69 KQRYYSIERLESSSHYVISLKAFN 92 (116)
T ss_dssp TCCEEEECSCCSSSBEEEEEEEEE
T ss_pred CeeEEEeCCCCCCCEEEEEEEEEe
Confidence 345799999999999999999753
No 217
>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=47.85 E-value=17 Score=33.31 Aligned_cols=25 Identities=8% Similarity=0.353 Sum_probs=21.1
Q ss_pred CcceEEEcCCCCCCEEEEEEEeccC
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
.+-.|.|.||.|++.|.++|.+...
T Consensus 71 ~~~~~~v~~L~p~t~Y~frV~A~n~ 95 (118)
T 1x3d_A 71 SQKQFKITKLSPAMGCKFRLSARND 95 (118)
T ss_dssp SCSEEEEESCCTTCEEEEECCEEES
T ss_pred CCcEEEeCCCCCCCEEEEEEEEEEC
Confidence 4468999999999999999997543
No 218
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=47.72 E-value=36 Score=30.75 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=29.7
Q ss_pred ccCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
++.+-.|+....+........+ ..-.|.|.||.|++.|.+++++..
T Consensus 47 ~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~i~~L~p~t~Y~~~V~A~n 92 (116)
T 1x5g_A 47 EIQNYKLYYMEKGTDKEQDVDV-SSHSYTINGLKKYTEYSFRVVAYN 92 (116)
T ss_dssp CCSEEEEEEEETTCCCCCCEEE-CSSEEEECSCCTTCEEEEEEEEEC
T ss_pred cccEEEEEEEECCCCccEEEec-CCceEEEcCCCCCCEEEEEEEEEc
Confidence 4556666655443111111122 356899999999999999999753
No 219
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1
Probab=47.12 E-value=26 Score=31.69 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCCccCccEEEEEeCCCC-eeeEE-eecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 956 SGQPKDGVSVEARSESKG-YYEET-VTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~~~-~~~~~-~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
+|.++.+-.|+....+.. ...-. ..-..-.|.|.||.||+.|.++|.+..
T Consensus 36 ~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n 87 (111)
T 1x5y_A 36 GAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVN 87 (111)
T ss_dssp CSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEE
T ss_pred CCCcccEEEEEEEECCCCceEEccccCCcccEEEECCCCCCCEEEEEEEEEc
Confidence 345688888877654321 11100 112356899999999999999999854
No 220
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Probab=47.00 E-value=61 Score=32.40 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=31.1
Q ss_pred ccCccEEEEEeCCC--CeeeEEeec-CcceEEEcCCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSESK--GYYEETVTD-TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~~--~~~~~~~Td-~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
++.+-.|+....+. ........+ ..-.|.|.||.||+.|.|++.+..
T Consensus 136 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 185 (205)
T 1cfb_A 136 PNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAIN 185 (205)
T ss_dssp SSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEE
T ss_pred CceEEEEEEEECCCCCCcEEEEecCCCccEEEEcCCCCCcEEEEEEEEEc
Confidence 35555666554432 133333434 467899999999999999999753
No 221
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}
Probab=46.75 E-value=38 Score=31.15 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=34.1
Q ss_pred CCccCccEEEEEeCCCC-eeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 957 GQPKDGVSVEARSESKG-YYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 957 g~p~~gv~v~~~~~~~~-~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
|.|+.+-.|+....+.. ...-...-..-.|.|.||.||+.|.++|.+...
T Consensus 46 g~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~ 96 (120)
T 2yux_A 46 NAAITGYTIQKADKKSMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENM 96 (120)
T ss_dssp SSCCCCCCEEEEETTTCCCEEEESSCCSSCCEECCCCSSEEEEEEECCCSS
T ss_pred CCCceEEEEEEEECCCCceEEeeecCCcCEEEECCCCCCCEEEEEEEEeeC
Confidence 46788888887754322 121112234567999999999999999997543
No 222
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens}
Probab=46.02 E-value=12 Score=34.32 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.8
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..=+|.|.||+||+.|.+.|.+..
T Consensus 57 ~~t~~~i~gL~PgT~Y~~~V~A~~ 80 (104)
T 2dle_A 57 SEPRAVIPGLRSSTFYNITVCPVL 80 (104)
T ss_dssp SSSEEECCSCCSSCEEEEEEEEES
T ss_pred CCCEEEECCCCCCCEEEEEEEEEE
Confidence 345799999999999999999864
No 223
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.15 E-value=43 Score=30.49 Aligned_cols=25 Identities=40% Similarity=0.470 Sum_probs=21.1
Q ss_pred CcceEEEcCCCCCCEEEEEEEeccC
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
..-.|.|+||+|++.|.++|++...
T Consensus 72 ~~~~~~i~~L~p~t~Y~~~V~A~n~ 96 (119)
T 2ee2_A 72 QEYSARLENLLPDTQYFIEVGACNS 96 (119)
T ss_dssp TCSEEEECSCCTTCEEEEEEEEECS
T ss_pred CEeEEEECCCCCCCEEEEEEEEEcC
Confidence 4458999999999999999998543
No 224
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=45.07 E-value=29 Score=31.67 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=21.0
Q ss_pred CcceEEEcCCCCCCEEEEEEEeccC
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
..-.|.|.||.||+.|.+++.+...
T Consensus 74 ~~~~~~v~~L~p~t~Y~frV~A~n~ 98 (121)
T 1wf5_A 74 KATSVTVKGLVPARSYQFRLCAVND 98 (121)
T ss_dssp TCCEEEEESCCTTCEEEEEEEEEES
T ss_pred CccEEEECCcCCCCEEEEEEEEEcC
Confidence 4457999999999999999997543
No 225
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.99 E-value=49 Score=29.72 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=31.6
Q ss_pred ccCccEEEEEeCC----CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 959 PKDGVSVEARSES----KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 959 p~~gv~v~~~~~~----~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
++.+-.|+....+ .........-..-.|.|++|.|++.|.++|++...
T Consensus 40 ~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~ 91 (114)
T 2ede_A 40 KITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNS 91 (114)
T ss_dssp CCSEEEEEEESCSSSCTTTSEEEEEETTCCEEEECSCCSSCEEEEEEEEECS
T ss_pred ceeEEEEEEEeCCCCCccceEEEEECCCceEEEEcCCCCCCEEEEEEEEEeC
Confidence 4556666655322 11223344455668999999999999999997543
No 226
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.89 E-value=26 Score=30.86 Aligned_cols=46 Identities=33% Similarity=0.295 Sum_probs=30.1
Q ss_pred ccCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 959 PKDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 959 p~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
++.+-.|+....+... .....-..-.|.|.||.|++.|.+++++..
T Consensus 40 ~i~~Y~i~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 85 (103)
T 2edy_A 40 RIISYTVVFRDINSQQ-ELQNITTDTRFTLTGLKPDTTYDIKVRAWT 85 (103)
T ss_dssp CCCEEEEEEEETTSCC-EEEEEESSSCCEECSCCTTCCEEEECCEEC
T ss_pred cEeEEEEEEEECCCCc-cEEEcCCcceEEEcCCCCCCEEEEEEEEEC
Confidence 4555566555443211 122233456899999999999999999754
No 227
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=44.84 E-value=33 Score=30.69 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=20.8
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|+||.|++.|.++|.+..
T Consensus 61 ~~~~~~l~~L~p~t~Y~~~V~A~n 84 (108)
T 2djs_A 61 QTNTARIDGLRPGMVYVVQVRART 84 (108)
T ss_dssp SSSEEEEESCCTTCEEEEEEEEEE
T ss_pred CccEEEEcCCCCCCEEEEEEEEEe
Confidence 456899999999999999999753
No 228
>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}
Probab=44.14 E-value=41 Score=31.33 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=36.9
Q ss_pred CCCCcceEEEEE-eCCCcEEEE-EEeCCCce---EEEccccCceEEEEEEcC-Ccee
Q 001065 145 GGGPSNVNVELL-SHSGDLISS-VITSSEGS---YLFKNIIPGKYKLRASHP-NLSV 195 (1167)
Q Consensus 145 ~~plaGv~V~L~-~~~g~~i~~-ttTd~~G~---f~f~~l~pG~Y~l~~~~~-g~~~ 195 (1167)
..++..|+|++. +.+|+++.+ ..+.+.|. +.+.+..+|.|.|...+. +..+
T Consensus 45 ~~~~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~~~~~l 101 (108)
T 3d33_A 45 ASPDRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGTPSGHL 101 (108)
T ss_dssp SSCCSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEESSCEE
T ss_pred CCcCCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeCCCCEE
Confidence 479999999999 677877654 44554433 355667899999999877 5554
No 229
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=43.78 E-value=30 Score=31.44 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred cceEEEcCCCCCCEEEEEEEecc
Q 001065 983 SGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 983 ~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.-.|.|.||+||+.|.|+|++..
T Consensus 66 ~~~~~l~~L~p~t~Y~~~VRa~~ 88 (109)
T 1uc6_A 66 GTAHTITDAYAGKEYIIQVAAKD 88 (109)
T ss_dssp CSEEEETTCCSSSCEEEEEECCB
T ss_pred CCEEEEeCCCCCCEEEEEEEEEe
Confidence 45899999999999999999763
No 230
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=43.69 E-value=34 Score=31.05 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=36.5
Q ss_pred EEEEEEEeCCCCcee-ceEEEE-cceeeeEeCCCceEEECcCCC-ccEEEE
Q 001065 327 SVGGRVVDENDMGVE-GVKILV-DGHERSITDRDGYYKLDQVTS-NRYTIE 374 (1167)
Q Consensus 327 sV~G~V~d~~G~pl~-Ga~V~l-~G~~~~~TD~dG~y~~~~L~p-G~Y~I~ 374 (1167)
.+--++.+++|+|++ ||.|.- +|+.+...+.+|...++++++ |+..|.
T Consensus 9 ~~ll~l~~~dG~plPfGA~V~d~~g~~~giVG~~G~vyl~gl~~~g~L~V~ 59 (94)
T 3l48_A 9 RLFAILRLADGSQPPFGASVTSEKGRELGMVADEGLAWLSGVTPGETLSVN 59 (94)
T ss_dssp CEEEEEEETTSCCCCTTCEEECTTCCEEEEBCGGGEEEESSCCTTCEEEEE
T ss_pred EEEEEEECCCCCcCCCccEEEcCCCceEEEECCCCEEEEECCCCCCEEEEE
Confidence 344467788999998 898865 567778999999999999976 444443
No 231
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.66 E-value=40 Score=30.61 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.7
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|.||.|++.|.++|++..
T Consensus 71 ~~~~~~i~~L~p~t~Y~~~V~A~n 94 (118)
T 2yrz_A 71 AQTSVVVEDLLPNHSYVFRVRAQS 94 (118)
T ss_dssp TCCEEEEESCCTTCEEEEEEEEEE
T ss_pred CcCEEEeCCCCCCCEEEEEEEEEc
Confidence 356899999999999999999753
No 232
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1
Probab=43.16 E-value=17 Score=33.26 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.5
Q ss_pred ceEEEcCCCCCCEEEEEEEecc
Q 001065 984 GSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 984 G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
=.|.|+||.|++.|.++|.+..
T Consensus 69 ~~~~i~~L~p~t~Y~~~V~A~n 90 (114)
T 1x4y_A 69 YWHSISHLQPETSYDIKMQCFN 90 (114)
T ss_dssp CEEEECSCCTTCEEEEEEEEEC
T ss_pred eEEEcCCCCCCCEEEEEEEEEc
Confidence 4699999999999999999753
No 233
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=43.11 E-value=13 Score=32.58 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=25.1
Q ss_pred eeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 975 YEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 975 ~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
.|-..-...-.|.|.||+||..|.+++.+--.
T Consensus 29 Kev~IPgh~nSYtIsGLkPGvtYegQLisV~r 60 (89)
T 1q38_A 29 KEATIPGHLNSYTIKGLKPGVVYEGQLISIQQ 60 (89)
T ss_dssp EEEEECSSSSCCCCCCCCTTCCEEEEEEEECT
T ss_pred EEEEcCCccceEEEeccCCCcEEEEEEEeeee
Confidence 44445566778999999999999999987533
No 234
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.05 E-value=42 Score=30.77 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.1
Q ss_pred cceEEEcCCCCCCEEEEEEEecc
Q 001065 983 SGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 983 ~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.=.|.|.||.|++.|.|+|.+..
T Consensus 59 ~t~~~l~~L~p~T~Y~v~V~A~~ 81 (108)
T 2ee3_A 59 ATSAMLGPLSSSTTYTVRVTCLY 81 (108)
T ss_dssp CCEEEECSCCSSCEEEEEEEEEC
T ss_pred cCEEEcCCCCCCCEEEEEEEEEe
Confidence 34799999999999999999753
No 235
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=42.67 E-value=23 Score=32.06 Aligned_cols=29 Identities=24% Similarity=0.573 Sum_probs=22.5
Q ss_pred ecCcceEEEcCCCCCCEEEEEEEeccCCC
Q 001065 980 TDTSGSYRLRGLHPDTTYVIKVVKKDGFG 1008 (1167)
Q Consensus 980 Td~~G~~~i~gL~pg~~y~v~~~~~~~~~ 1008 (1167)
.-.--.|.|+||+||..|..++-+...+|
T Consensus 57 p~h~nSYtI~GL~P~~~YE~qv~S~~ryG 85 (98)
T 1oww_A 57 PGHLNSYTIKGLKPGVVYEGQLISIQQYG 85 (98)
T ss_dssp CSSCCEEEECSCCSSEEEEEEEEEEESSS
T ss_pred cCccceEEEecCCCCcEEEEEEEEeeccC
Confidence 33445799999999999999998764444
No 236
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=42.67 E-value=4.2e+02 Score=32.22 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.7
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|+||.||..|.++|.+..
T Consensus 221 ~~~~~~i~~L~P~t~Y~frV~A~n 244 (680)
T 1zlg_A 221 TDERVQLTDIRPSRWYQFRVAAVN 244 (680)
T ss_pred CCCeEEeCCCCCCCEEEEEEEEEe
Confidence 456799999999999999999753
No 237
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=42.51 E-value=61 Score=29.18 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=33.7
Q ss_pred CcccceEEEEEeCCCcEEEeEEecCCcEEEeCCCCC----ccEEEEEEcCCC
Q 001065 49 LDYSHVTVELRTLDGLVKESTQCAPNGYYFIPVYDK----GSFVIKVNGPEG 96 (1167)
Q Consensus 49 i~~sgv~v~L~~~~G~~~~~t~t~~nG~y~~~~l~~----G~Y~l~~~~P~G 96 (1167)
+.-+.++|+++ .+|.+++++...| |-|.|..+.+ |+-.|.++--+|
T Consensus 22 iA~s~A~V~v~-qnG~~iy~~~Vpp-GpF~I~dl~~~~~~Gdl~V~v~eadG 71 (90)
T 3fcg_A 22 IARTQARVEVL-RDGYTVSNELVPS-GPFELANLPLGGGSGELKVIIHESDG 71 (90)
T ss_dssp EESSSEEEEEE-SSSCEEEEEEECS-EEEEECCCC---CCEEEEEEEECTTS
T ss_pred EEcCCcEEEEE-ECCEEEEEeEeCC-CCeEEcCCcccCCceeEEEEEEECCC
Confidence 44568899997 7899999988865 9999888765 555555555443
No 238
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Probab=42.50 E-value=18 Score=32.95 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=19.0
Q ss_pred EEEcCCCCCCEEEEEEEeccC
Q 001065 986 YRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 986 ~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
|.|.||.||+.|.++|++...
T Consensus 64 ~~i~~L~p~t~Y~f~V~A~~~ 84 (107)
T 1x5a_A 64 VLLTKLQPDTTYIVRVRTLTP 84 (107)
T ss_dssp EEEESCCSSCEEEEEEEEECS
T ss_pred EEECCCCCCCEEEEEEEEECC
Confidence 999999999999999998643
No 239
>3hn5_A Putative exported protein BF0290; YP_210027.1, structural genomics, joint center for S genomics, JCSG; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=42.39 E-value=56 Score=34.16 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=52.9
Q ss_pred eeeEEEEEEEccCCCCCccc-----ceEEEEECCcceee----ceeecCCceEEEecCCCcceEEeeccCccccC---CC
Q 001065 856 KLSQISVRIYSKDDAGEPIP-----SVLLSLSGDDGYRN----NSVSWAGGSFHFDNLFPGNFYLRPLLKEYAFS---PP 923 (1167)
Q Consensus 856 ~l~~i~~~v~~~~~~~~pl~-----gvllslsg~~~~r~----n~~T~~~G~~~f~~L~PG~Y~~~~~~key~~~---p~ 923 (1167)
+-+.+..+|... |||++ |+.+.|--. +|.. +.....||+|. .-|+.|+|-+++.....-|- ..
T Consensus 9 P~a~l~G~iv~t---GE~i~~~~~~gv~i~l~E~-gy~~~~~~~~~v~qDGtf~-~~lF~G~Yki~~~~gnGPf~~~~~d 83 (215)
T 3hn5_A 9 PESMLTGRVMYN---GEALQLRGNEAVQLQLYQH-GYAKHDPINVYVNQDGMYS-ANLFDGEYQMITKSGNGPWTSEGRD 83 (215)
T ss_dssp -CEEEEEEEEET---TEECCCCCTTSCEEEEESS-CGGGCCCEEEEBCTTSEEE-EEECSEEEEEEECTTCSSBCSTTCC
T ss_pred CCceEEEEEEEC---CCEeeecCCCceEEEEEEc-ccCCCCCeeEEEcCCCcEE-EEEECceeEEEEecCCCCcccCCCC
Confidence 446677777732 67764 477777655 5655 57788999999 89999999999875555444 24
Q ss_pred ceeEEecCCcEEEEE
Q 001065 924 AQAIELGSGESREVI 938 (1167)
Q Consensus 924 ~~~i~v~~G~~~~v~ 938 (1167)
++.|+|+-..+..++
T Consensus 84 ti~v~i~G~t~~Dfe 98 (215)
T 3hn5_A 84 TINVTVAGNTVQDVE 98 (215)
T ss_dssp CEEEEESSSEECCEE
T ss_pred eEEEEECCCeEEeEE
Confidence 577888654443333
No 240
>4eiu_A Uncharacterized hypothetical protein; PF12866 family protein, DUF3823, structural genomics, joint for structural genomics, JCSG; HET: PGE; 1.90A {Bacteroides uniformis}
Probab=41.95 E-value=86 Score=33.46 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=40.7
Q ss_pred eEEeceEEEEEEEeC-CCCce------eceEEEE--cc-----ee--eeEeCCCceEEECcCCCccEEEEEE
Q 001065 321 FQVTGFSVGGRVVDE-NDMGV------EGVKILV--DG-----HE--RSITDRDGYYKLDQVTSNRYTIEAV 376 (1167)
Q Consensus 321 f~~~g~sV~G~V~d~-~G~pl------~Ga~V~l--~G-----~~--~~~TD~dG~y~~~~L~pG~Y~I~~~ 376 (1167)
+..+...+.|+|+|. +|+++ .|++|.| .| .. -.....||.|+=..|=.|+|.|...
T Consensus 5 YDeP~s~l~G~ivd~~tGE~i~~~~g~~gv~i~l~E~g~~~~~~~~~~~~v~~DGtf~Nt~lF~G~Yki~~~ 76 (249)
T 4eiu_A 5 YEEPSETIWGEVVDEATGKRVLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQNTKIFKGEYNVRID 76 (249)
T ss_dssp ---CCEEEEEEEEETTTCCBCCCCSSTTSCEEEEEECCSSCCBCCSCCEECCTTSEEEEEEECSEEEEEEEE
T ss_pred CCCCcceeEEEEEECCCCCEeeeccCCCceEEEEEecccccCCCccCCEEECCCCceeeeeEEcceeEEEeC
Confidence 444556799999995 67776 3588888 11 11 2367899999966899999999987
No 241
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=41.30 E-value=2.1e+02 Score=34.04 Aligned_cols=114 Identities=16% Similarity=0.094 Sum_probs=56.7
Q ss_pred CcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecC--cccccceEEEEecCCeEEEEEEEEecc-ccccc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGS--GDIKGLDFLVFEQPEKTILSGHVEGNR-IKELN 1058 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~--~d~~~~~f~~~~~~~~~~i~g~V~~~~-~~~~~ 1058 (1167)
..-.+.|.||.|+..|.++|.+....|... + .|.+..+.+.. .--.++..... ....+.|+ =.... ..-.+
T Consensus 398 ~~ts~tI~gL~P~T~Y~frV~A~N~~G~~s-p--s~~s~~v~v~T~~~~Ps~~~~~~~-s~tSV~Ls--W~pP~~~ng~I 471 (536)
T 3fl7_A 398 TRTSVTVSDLEPHMNYTFTVEARNGVSGLV-T--SRSFRTASVSINQTEPPKVRLEGR-STTSLSVS--WSIPPPQQSRV 471 (536)
T ss_dssp CSSEEEEECCCTTCEEEEEEEEECTTGGGC-S--CCCEEEEEEECCSCCCCEEEEEEC-CC-CCEEE--EECCTTTTTTC
T ss_pred ccceeEeCCCCCCCEEEEEEEEEecCCCCC-C--CCccceeEEeecccCCCCCceeec-cCCeEEEE--EECCcCCCCcc
Confidence 456899999999999999999864333110 0 23344443321 11112222111 11111122 11110 01123
Q ss_pred ceeEEEEEecCCCCceEEEEeeCCceeEEeccCCCC-cEEEEEEec
Q 001065 1059 SHLLVEIKSASDTSKVESVISLPMSNFFQVKDLPKG-KHLLQLRSS 1103 (1167)
Q Consensus 1059 ~~l~v~l~~~~~~~~v~~~~~~~~~~~f~~~~l~~~-~y~v~l~s~ 1103 (1167)
....|..+..+.. .....+ ......|.+..|.++ .|.+++...
T Consensus 472 ~~Y~V~y~~~~~~-~~~~~v-~~~~ts~~l~gL~P~T~Y~frVrA~ 515 (536)
T 3fl7_A 472 WKYEVTYRKKGDS-NSYNVR-RTEGFSVTLDDLAPDTTYLVQVQAL 515 (536)
T ss_dssp SEEEEEEEEC--C-CCCEEE-EESSSEEECCSCCSSCEEEEEEEEE
T ss_pred cEEEEEEEECCCC-ceEEEE-cCCCCEEEECCCCCCCEEEEEEEEE
Confidence 3556666655443 122212 233467899999998 699988863
No 242
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=41.24 E-value=32 Score=33.32 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=30.3
Q ss_pred cceEEEEEeCCCcEEEeEEe--cCCcE--EEeC-------CCCCccEEEEEEc
Q 001065 52 SHVTVELRTLDGLVKESTQC--APNGY--YFIP-------VYDKGSFVIKVNG 93 (1167)
Q Consensus 52 sgv~v~L~~~~G~~~~~t~t--~~nG~--y~~~-------~l~~G~Y~l~~~~ 93 (1167)
..++|+++|.+|+++.+-.. .+.|. |.-+ .+++|.|++++.+
T Consensus 37 ~~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~v~a 89 (138)
T 3osv_A 37 SNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQT 89 (138)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECSEEEEEEECSBCTTSCBCCSEEEEEEEEE
T ss_pred cEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCccEEEEEEE
Confidence 47899999999999887543 34564 4433 2578999997765
No 243
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.08 E-value=39 Score=30.37 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.8
Q ss_pred ceEEEcCCCCCCEEEEEEEecc
Q 001065 984 GSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 984 G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
-.|.|+||.|++.|.++|++..
T Consensus 64 ~~~~i~~L~p~t~Y~~~V~A~n 85 (109)
T 2e7h_A 64 NRAELRGLKRGASYLVQVRARS 85 (109)
T ss_dssp SEEEEESCCTTSCEEEEEEEEC
T ss_pred CEEEECCCCCCCeEEEEEEEEe
Confidence 3899999999999999999754
No 244
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.89 E-value=32 Score=31.19 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.8
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|.||.|++.|.++|.+..
T Consensus 72 ~~~~~~i~~L~p~t~Y~~~V~A~n 95 (119)
T 2ed7_A 72 GSLQLTVGNLKPEAMYTFRVVAYN 95 (119)
T ss_dssp TCCEEEECSCCSSSEEEECCEEEE
T ss_pred CceEEEeCCCCCCCEEEEEEEEEc
Confidence 466899999999999999999753
No 245
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C
Probab=40.63 E-value=67 Score=28.71 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.9
Q ss_pred CcceEEEcCCCCCCEEEEEEEec
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKK 1004 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~ 1004 (1167)
..-.+.|.||.|++.|.|++.+-
T Consensus 63 ~~~~~~l~~L~p~t~Y~v~V~A~ 85 (102)
T 3n1f_C 63 SKQWHMIGHLQPETSYDIKMQCF 85 (102)
T ss_dssp TCSEEEECSCCTTCEEEEEEEEE
T ss_pred CceEEECCCCCCCCEEEEEEEEE
Confidence 34479999999999999999974
No 246
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=40.35 E-value=57 Score=30.10 Aligned_cols=28 Identities=18% Similarity=0.598 Sum_probs=22.9
Q ss_pred EeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 978 TVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 978 ~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
...-..-.|.|+||.|++.|.+++.+..
T Consensus 79 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 106 (130)
T 1wfo_A 79 VLAPSARQYTATGLKPESVYLFRITAQT 106 (130)
T ss_dssp EECTTCCEEEEESCCSSSEEEEEEEEEC
T ss_pred EeCCCceEEEEcCCCCCCEEEEEEEEEe
Confidence 3344567899999999999999999754
No 247
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1
Probab=39.99 E-value=60 Score=29.88 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.4
Q ss_pred eEEEcCCCCCCEEEEEEEeccC
Q 001065 985 SYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 985 ~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
.|.|.||.||+.|.++|.+...
T Consensus 72 ~~~v~~L~p~t~Y~FRV~A~N~ 93 (115)
T 2ic2_A 72 TASVTDLKPQHTYRFRILAVYS 93 (115)
T ss_dssp EEEECSCCSSEEEEEEEEEEET
T ss_pred EEEeCCCCCCCEEEEEEEEEeC
Confidence 6899999999999999997543
No 248
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=39.77 E-value=1.3e+02 Score=29.92 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=35.2
Q ss_pred CCCCccCccEEEEEeCCCC-eeeE-Ee---ecCcceEEEcCCCCCCEEEEEEEeccCCC
Q 001065 955 LSGQPKDGVSVEARSESKG-YYEE-TV---TDTSGSYRLRGLHPDTTYVIKVVKKDGFG 1008 (1167)
Q Consensus 955 ~~g~p~~gv~v~~~~~~~~-~~~~-~~---Td~~G~~~i~gL~pg~~y~v~~~~~~~~~ 1008 (1167)
.+|.|+.+..++....+.. .... .. ...++.+.|.+|.|++.|.+++.+....|
T Consensus 139 ~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G 197 (215)
T 3mtr_A 139 TGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKG 197 (215)
T ss_dssp CCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSC
T ss_pred cCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCc
Confidence 3567888877887755422 1111 11 12238999999999999999998754333
No 249
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=39.66 E-value=26 Score=32.75 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.1
Q ss_pred cCcceEEEcCCCCCCEEEEEEEecc
Q 001065 981 DTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 981 d~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
-..-.|.|+||.|++.|.|+|.+..
T Consensus 78 ~~~~~~~i~~L~p~t~Y~~~V~A~n 102 (126)
T 1x5i_A 78 YKQRYYTIENLDPSSHYVITLKAFN 102 (126)
T ss_dssp TTCCEEEECSCCSSCEECCEEEEEC
T ss_pred CCeeEEEEeCCCCCCEEEEEEEEEe
Confidence 3446799999999999999999754
No 250
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=39.49 E-value=51 Score=29.94 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=21.2
Q ss_pred cCcceEEEcCCCCCCEEEEEEEecc
Q 001065 981 DTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 981 d~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
-..=.|.|.||.|++.|.+++.+..
T Consensus 71 ~~~~~~~i~~L~p~t~Y~~~V~A~n 95 (119)
T 1wfn_A 71 NVTLEYRVTGLTALTTYTIEVAAMT 95 (119)
T ss_dssp SSCCEEEEESCCTTCEEEEEEEEEC
T ss_pred CCceEEEEcCCCCCCEEEEEEEEEc
Confidence 3455799999999999999999753
No 251
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.44 E-value=20 Score=33.70 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=21.5
Q ss_pred cceEEEcCCCCCCEEEEEEEeccCCC
Q 001065 983 SGSYRLRGLHPDTTYVIKVVKKDGFG 1008 (1167)
Q Consensus 983 ~G~~~i~gL~pg~~y~v~~~~~~~~~ 1008 (1167)
.-.|.|+||.||+.|.++|++....|
T Consensus 79 ~~~~~v~gL~p~t~Y~frV~A~N~~G 104 (127)
T 2dmk_A 79 QNHYTVHGLQSGTRYIFIVKAINQAG 104 (127)
T ss_dssp SSEEEEESCCSSCEEEEEEEEEESSC
T ss_pred CCeEEECCCCCCCEEEEEEEEEeCCC
Confidence 34799999999999999999865434
No 252
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=39.43 E-value=70 Score=28.94 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=37.6
Q ss_pred eEEEEEEEEcCCCCccC-ccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEE
Q 001065 945 AYSATGTITLLSGQPKD-GVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVI 999 (1167)
Q Consensus 945 ~~s~~G~V~~~~g~p~~-gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v 999 (1167)
.+.+.=+++.-+|+|+| |+.|. +.++ ........+|+..++||.+.....|
T Consensus 7 G~~~ll~l~~~dG~plPfGA~V~--d~~g--~~~giVG~~G~vyl~gl~~~g~L~V 58 (94)
T 3l48_A 7 GKRLFAILRLADGSQPPFGASVT--SEKG--RELGMVADEGLAWLSGVTPGETLSV 58 (94)
T ss_dssp CCCEEEEEEETTSCCCCTTCEEE--CTTC--CEEEEBCGGGEEEESSCCTTCEEEE
T ss_pred EEEEEEEEECCCCCcCCCccEEE--cCCC--ceEEEECCCCEEEEECCCCCCEEEE
Confidence 34556678888999999 88873 3332 2457899999999999988875443
No 253
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=39.17 E-value=6e+02 Score=30.82 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=57.2
Q ss_pred cCcceEEEcCCCCCCEEEEEEEeccCCCCcceeecCCceEEEEecCccc----ccceEEEEecCCeEEEEEEEEecc-cc
Q 001065 981 DTSGSYRLRGLHPDTTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDI----KGLDFLVFEQPEKTILSGHVEGNR-IK 1055 (1167)
Q Consensus 981 d~~G~~~i~gL~pg~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~----~~~~f~~~~~~~~~~i~g~V~~~~-~~ 1055 (1167)
...-.|.|.||.|++.|.++|.+....|.. . +..+.+. ..+++ ..+++.+......+.|+ =.-.. ..
T Consensus 419 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s---~--S~~~~~~-T~~~~P~~p~~~~~~~~~~~~si~l~--W~~P~~~~ 490 (731)
T 2v5y_A 419 NSHPQHTITNLSPYTNVSVKLILMNPEGRK---E--SQELIVQ-TDEDLPGAVPTESIQGSTFEEKIFLQ--WREPTQTY 490 (731)
T ss_dssp CSSCEEEECSCCSSCEEEEEEEEECSSCEE---E--CCCEEEE-CCCCCCCCCCTTTCEEEEETTEEEEE--CCCCSCCS
T ss_pred CCcceEEECCCCCCCEEEEEEEEEcCCCCC---C--CceEEEE-ccCCCCCCCCcceEEeeecCCeEEEE--EcCCCCCC
Confidence 345679999999999999999975433321 1 2334443 22222 11233322212222222 11110 01
Q ss_pred cccceeEEEEEecCCC-------CceEEEEeeCCceeEEeccCCCC-cEEEEEEe
Q 001065 1056 ELNSHLLVEIKSASDT-------SKVESVISLPMSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1056 ~~~~~l~v~l~~~~~~-------~~v~~~~~~~~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
-.+..-+|+.+..+.. ..............|.+..|.++ .|.+++..
T Consensus 491 g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A 545 (731)
T 2v5y_A 491 GVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRA 545 (731)
T ss_dssp SCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEE
T ss_pred CCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEEEEEE
Confidence 1233555555543211 11122122334557899999999 58888876
No 254
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=38.56 E-value=35 Score=31.61 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=33.7
Q ss_pred CCCccCccEEEEEeC----CCCeeeEEe---ecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 956 SGQPKDGVSVEARSE----SKGYYEETV---TDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~----~~~~~~~~~---Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
+|.++.+-.|+.+.. ......-.. .-..-.|.|.||.|++.|.++|.+...
T Consensus 44 ~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~ 101 (124)
T 1wis_A 44 GKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNI 101 (124)
T ss_dssp CSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECCCCEEECS
T ss_pred CCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeCCCCCCCEEEEEEEEEEC
Confidence 456777888877652 222222111 234568999999999999999997543
No 255
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A
Probab=36.82 E-value=83 Score=31.70 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=20.8
Q ss_pred cCcceEEEcCCCCCCEEEEEEEec
Q 001065 981 DTSGSYRLRGLHPDTTYVIKVVKK 1004 (1167)
Q Consensus 981 d~~G~~~i~gL~pg~~y~v~~~~~ 1004 (1167)
...-.|.|.||.||+.|.++|++.
T Consensus 169 ~~~~~~~l~~L~p~t~Y~~~Vra~ 192 (215)
T 1cd9_B 169 SSKDQFELCGLHQAPVYTLQMRCI 192 (215)
T ss_dssp SCEEEEEECCCCSCSCEEEEEEEE
T ss_pred CcceEEEEcCCCCCCEEEEEEEee
Confidence 345689999999999999999975
No 256
>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}
Probab=36.79 E-value=2e+02 Score=26.39 Aligned_cols=52 Identities=12% Similarity=0.245 Sum_probs=38.1
Q ss_pred CCCCcceEEEEEeC-CCcEEEEEEeCCCceEEEc--cccCceEEEEEEcCCceeE
Q 001065 145 GGGPSNVNVELLSH-SGDLISSVITSSEGSYLFK--NIIPGKYKLRASHPNLSVE 196 (1167)
Q Consensus 145 ~~plaGv~V~L~~~-~g~~i~~ttTd~~G~f~f~--~l~pG~Y~l~~~~~g~~~~ 196 (1167)
..+++.|+|++.+. .|+.+.+-+--.-....++ +-..|.|+|...+..|.+.
T Consensus 41 ~~~~~~vTItItNe~TG~~VYs~~~s~p~~i~IdLnge~sG~Y~IeI~~~~~~Lt 95 (101)
T 3sd2_A 41 GRAKDYAIITVTNKATGEIVHSKTYHNTSIVMIDMSSCEKGEYTIHIILNDCLLE 95 (101)
T ss_dssp SSCCSCEEEEEEETTTCCEEEEEEESSCSEEEEECTTSCSEEEEEEEEETTEEEE
T ss_pred ccCCCcEEEEEEECCCCcEEEEEeccCCcEEEEEcCCCcCceEEEEEEeCCcEEE
Confidence 36899999999987 5888776544334445554 3357999999998887764
No 257
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=36.72 E-value=28 Score=43.52 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=30.0
Q ss_pred cCCCcEEEcccCCccEEEEEEeecccccccCCCceEE--eeeEEEEEec
Q 001065 533 DDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWE--QSFIGVDVGT 579 (1167)
Q Consensus 533 d~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~--~~~~~v~V~~ 579 (1167)
..+.+..|++|+||+|+++++++ ...-.|. ..++.|.|.+
T Consensus 741 ~~~~~~~ytnL~pG~Y~f~V~a~-------n~~g~w~~~~~~l~i~I~P 782 (795)
T 4a2l_A 741 TDSRTVSYSNLPQGTYQFLVKAA-------NSDGKWNPIPTALEIIVLP 782 (795)
T ss_dssp SSCCEEEEECCCSEEEEEEEEEE-------CTTSCBCSSCEEEEEEECC
T ss_pred CCcCeEEecccCCCeEEEEEEEE-------CCCCccCCCceEEEEEEEC
Confidence 45678999999999999999976 3444454 4566777765
No 258
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.43 E-value=22 Score=33.28 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.6
Q ss_pred cceEEEcCCCCCCEEEEEEEecc
Q 001065 983 SGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 983 ~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.-.|.|.||.|++.|.++|++..
T Consensus 77 ~~~~~v~gL~P~T~Y~f~V~A~n 99 (123)
T 2edd_A 77 SLSYTATGLKPNTMYEFSVMVTK 99 (123)
T ss_dssp SSEEEEESCCTTCEEEEEEEECC
T ss_pred ceEEEecCCCCCCEEEEEEEEeC
Confidence 56899999999999999999854
No 259
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=35.94 E-value=58 Score=31.45 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=30.8
Q ss_pred cccceEEEEEeCCCcEEEeEE--ecCCcEEE--eCC-------CCCccEEEEEEc
Q 001065 50 DYSHVTVELRTLDGLVKESTQ--CAPNGYYF--IPV-------YDKGSFVIKVNG 93 (1167)
Q Consensus 50 ~~sgv~v~L~~~~G~~~~~t~--t~~nG~y~--~~~-------l~~G~Y~l~~~~ 93 (1167)
+...++|+++|.+|+++.+-. ..+.|.+. .+. +++|.|++++.+
T Consensus 37 ~a~~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a 91 (138)
T 3c12_A 37 SAGFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQ 91 (138)
T ss_dssp SSEEEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEE
Confidence 345899999999999987754 23456544 333 467888887765
No 260
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=35.41 E-value=39 Score=30.90 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.7
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|.||.|++.|.|+|.+..
T Consensus 78 ~~~~~~i~~L~p~t~Y~~~V~A~n 101 (125)
T 1uen_A 78 SKTHGMLPGLEPFSHYTLNVRVVN 101 (125)
T ss_dssp SCSEEEEESCCSSCEEEEEEEEEE
T ss_pred CccEEEeCCCCCCCEEEEEEEEec
Confidence 456899999999999999999753
No 261
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=34.90 E-value=48 Score=30.56 Aligned_cols=50 Identities=26% Similarity=0.394 Sum_probs=34.4
Q ss_pred CCCccCccEEEEEeCCCCe--eeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 956 SGQPKDGVSVEARSESKGY--YEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~~~~--~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.+.|+.|-.|+.+..+..- ..+...-..=.|.+++|.||+.|.++|.+..
T Consensus 33 ~~~~I~gY~vey~~~~~~W~~~~~~~~~~~t~~~v~~L~pg~~Y~FRV~A~n 84 (108)
T 1v5j_A 33 VPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFA 84 (108)
T ss_dssp CSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEEE
T ss_pred CCCCCcEEEEEEEeCCCCcEEeeeecCCCcCEEEeCCCCCCCEEEEEEEEEc
Confidence 4568888888887643221 1222222445799999999999999999753
No 262
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Probab=34.58 E-value=71 Score=33.76 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=29.4
Q ss_pred cCccEEEEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 960 KDGVSVEARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 960 ~~gv~v~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
+.+-.|.....+.........-..-.|.|.||.||+.|.++|.+..
T Consensus 229 i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n 274 (290)
T 3l5i_A 229 IRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYT 274 (290)
T ss_dssp CCEEEEEEEETTSCCEEEEEETTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEeCCCCeEEEEeCCCceEEEeCCCCCCCEEEEEEEEEe
Confidence 4455555544332222222334455899999999999999999754
No 263
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=33.74 E-value=23 Score=32.37 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.1
Q ss_pred cceEEEcCCCCCCEEEEEEEecc
Q 001065 983 SGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 983 ~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.-.|.|.||.|++.|.|++.+..
T Consensus 77 ~~~~~i~~L~p~t~Y~~~V~A~n 99 (122)
T 1va9_A 77 SEVYTLDNLKKFAQYGVVVQAFN 99 (122)
T ss_dssp EEEEEEESCCSSCCEEEEEEEEE
T ss_pred eeEEEeCCCCCCCEEEEEEEEEc
Confidence 35899999999999999999753
No 264
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=33.15 E-value=64 Score=29.58 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=17.1
Q ss_pred EccccCceEEEEEE---cCCceeEeecceEEEE
Q 001065 176 FKNIIPGKYKLRAS---HPNLSVEVRGSTEVEL 205 (1167)
Q Consensus 176 f~~l~pG~Y~l~~~---~~g~~~~~~~~~~V~v 205 (1167)
+..|+||+|+|... .+|... +++..|+|
T Consensus 71 l~~L~~G~YtV~WrvvS~DGH~~--~G~~~FtV 101 (102)
T 2c9r_A 71 ASPLTAGTYKVDWRAVSSDTFPI--TGSVTFKV 101 (102)
T ss_dssp SSCCCSEEEEEEEEECCTTCCCE--EEEEEEEE
T ss_pred CCCCCCceEEEEEEEEecCCCcc--CCEEEEEE
Confidence 34789999999753 334333 34555554
No 265
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=32.80 E-value=19 Score=33.17 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.6
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|.||+|++.|.++|++..
T Consensus 66 ~~~~~~i~gL~P~T~Y~f~V~A~~ 89 (113)
T 1x5j_A 66 TTLSYLVTGLKPNTLYEFSVMVTK 89 (113)
T ss_dssp CSSEEEEESCCTTCEECCEEEEEC
T ss_pred CcCEEEeCCCCCCcEEEEEEEEec
Confidence 345799999999999999999754
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=32.18 E-value=41 Score=41.94 Aligned_cols=41 Identities=24% Similarity=0.558 Sum_probs=29.7
Q ss_pred ecCCCcEEEcccCCccEEEEEEeecccccccCCCceEE--eeeEEEEEec
Q 001065 532 TDDSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWE--QSFIGVDVGT 579 (1167)
Q Consensus 532 Td~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~--~~~~~v~V~~ 579 (1167)
+..+.+..|++|+||+|+++++++ ...-.|. ..++.|.|.+
T Consensus 734 ~~~~~~~~ytnL~pG~Y~f~V~a~-------~~~g~w~~~~~~l~i~I~p 776 (781)
T 3v9f_A 734 INEQNSVTFRNIPPGKYEFLVKAR-------LHNQDWSEDTTSLRIHINP 776 (781)
T ss_dssp ESSCSEEEECSCCSEEEEEEEEEE-------ETTSCCCSCCEEEEEEECC
T ss_pred cCCcceEEEcCCCCceEEEEEEEE-------CCCCccCCCceEEEEEEcC
Confidence 456778999999999999999976 3333444 3456667654
No 267
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.05 E-value=29 Score=32.24 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.1
Q ss_pred cCcceEEEcCCCCCCEEEEEEEecc
Q 001065 981 DTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 981 d~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
-..-.|.|.||.|++.|.+++.+..
T Consensus 76 ~~~~~~~i~~L~p~t~Y~~~V~A~n 100 (134)
T 2edx_A 76 REHSSWDLVGLEKWTEYRVWVRAHT 100 (134)
T ss_dssp TTCSEEEEESCCTTCEEEEEEEEEE
T ss_pred CCccEEEeCCCCCCCEEEEEEEEEc
Confidence 3456899999999999999999753
No 268
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=31.89 E-value=32 Score=42.69 Aligned_cols=39 Identities=10% Similarity=0.264 Sum_probs=28.4
Q ss_pred CCCcEEEcccCCccEEEEEEeecccccccCCCceEEe--eeEEEEEec
Q 001065 534 DSDQFLFRDVLPGKYRLEVKRTSREASSMEDNWCWEQ--SFIGVDVGT 579 (1167)
Q Consensus 534 ~~G~f~f~~L~PG~Y~v~~~~~~~~~~~~~~~~cw~~--~~~~v~V~~ 579 (1167)
...+..|++|+||+|+++++++ ...-.|.. .++.|.|.+
T Consensus 708 ~~~~~~ytnL~pG~Y~f~V~a~-------~~~g~w~~~~~~l~I~I~P 748 (758)
T 3ott_A 708 NINRITYSNLSYGNYQLIISKL-------ERDGQPSNRPHILNIRILP 748 (758)
T ss_dssp TCCEEEECSCCSEEEEEEEEEB-------CTTSCBCSSCEEEEEEECC
T ss_pred CcceEEecCCCCccEEEEEEEe-------CCCCCccCccEEEEEEECC
Confidence 3456899999999999999976 33334544 456777765
No 269
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1
Probab=31.74 E-value=37 Score=29.25 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.1
Q ss_pred ceEEEcCCCCCCEEEEEEEeccC
Q 001065 984 GSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 984 G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
-.|.+.||.||..|.++|.+.+.
T Consensus 51 ~~~~~~~L~~~t~Y~~~V~A~n~ 73 (88)
T 1k85_A 51 TTATISGLAADTSYTFTVKAKDA 73 (88)
T ss_dssp SEEEECCCCSSCEEEEEEEEEET
T ss_pred CEEEeCCCCCCCEEEEEEEEEeC
Confidence 58999999999999999998654
No 270
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=31.63 E-value=1.1e+02 Score=27.47 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=35.9
Q ss_pred cceEEEEEeCCCcEEEeEEecC-CcEEE---eCCCCCccEEEEEEcCCCcccCCceEEEEEc
Q 001065 52 SHVTVELRTLDGLVKESTQCAP-NGYYF---IPVYDKGSFVIKVNGPEGWSWNPDKVAVTVD 109 (1167)
Q Consensus 52 sgv~v~L~~~~G~~~~~t~t~~-nG~y~---~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd 109 (1167)
..+++++.+++|........+. ||.|. .|- .+|.|.|.++--. -+..-....+.|+
T Consensus 22 ~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~-e~G~h~v~V~~~g-~~I~GSPF~v~V~ 81 (93)
T 2d7n_A 22 GELTGEVRMPSGKTARPNITDNKDGTITVRYAPT-EKGLHQMGIKYDG-NHIPGSPLQFYVD 81 (93)
T ss_dssp SCEEEEEECTTSCEECCEEEECSSSCEEEEECCS-SCEEEEEEEEESS-SCCTTCSEEEEEC
T ss_pred CCEEEEEECCCCCccceEEEECCCCEEEEEEEcc-CCEEEEEEEEECC-EeCCCCCeEEEEe
Confidence 4678999999997655444444 88777 355 7899999877532 3333333445554
No 271
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.58 E-value=1.5e+02 Score=26.78 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=38.7
Q ss_pred CcccceEEEEEeCCCcEEEeEEecC-CcEEE---eCCCCCccEEEEEEcCCCcccCCceEEEEEcC
Q 001065 49 LDYSHVTVELRTLDGLVKESTQCAP-NGYYF---IPVYDKGSFVIKVNGPEGWSWNPDKVAVTVDD 110 (1167)
Q Consensus 49 i~~sgv~v~L~~~~G~~~~~t~t~~-nG~y~---~~~l~~G~Y~l~~~~P~G~~~~p~~~~v~Vd~ 110 (1167)
..-..+++++.+++|........+. +|.|. .|. .+|.|.|.++--. .+..-....+.|+.
T Consensus 27 ~g~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~-e~G~h~v~V~~~G-~~I~GSPF~v~V~~ 90 (95)
T 2ee9_A 27 VRKGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPT-EVGLHEMHIKYMG-SHIPESPLQFYVNY 90 (95)
T ss_dssp CCTTSEEEEEECTTSCEECCEEEECSSSCEEEECCCC-SSEEEEEEEEESS-CBCTTCSEEEEECC
T ss_pred CCCCCEEEEEECCCCCccccEEEeCCCCeEEEEEEec-CCEeEEEEEEECC-EECCCCCeEEEEec
Confidence 3445788999999997755544444 88777 355 7899999887542 33333444455543
No 272
>2xwx_A GBPA, glcnac-binding protein A; chitin-binding protein; 1.80A {Vibrio cholerae}
Probab=31.34 E-value=3.2e+02 Score=31.13 Aligned_cols=47 Identities=11% Similarity=0.047 Sum_probs=34.2
Q ss_pred eEEEEEEEeCCCCceeceEEEEccee-eeEeCCCceEEECcCCCccEEEEEEe
Q 001065 326 FSVGGRVVDENDMGVEGVKILVDGHE-RSITDRDGYYKLDQVTSNRYTIEAVK 377 (1167)
Q Consensus 326 ~sV~G~V~d~~G~pl~Ga~V~l~G~~-~~~TD~dG~y~~~~L~pG~Y~I~~~~ 377 (1167)
..|+.+|.+.+++.++.....+++.. .. =...+.++++|.|.+.+..
T Consensus 325 ~~v~~~v~d~~~~~~~~~~~~v~~~~~~~-----~tl~ls~~~aGhh~lvv~~ 372 (391)
T 2xwx_A 325 MSAELTVYNHHQKPLASWSQAMTDGELKS-----ITLELSEAKAGHHMLVSRI 372 (391)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECTTCEEE-----EEEECSCCCSEEEEEEEEE
T ss_pred eEEEEEEEcCCCCccceeeEEEcCCCcce-----EEEEccCCCCccEEEEEEE
Confidence 56888999999999999988883321 10 0245668899999987765
No 273
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=31.12 E-value=58 Score=29.99 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=29.6
Q ss_pred CCCccCccEEEEEeCC---CCeeeEEeecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 956 SGQPKDGVSVEARSES---KGYYEETVTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 956 ~g~p~~gv~v~~~~~~---~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
+|.++.+-.|+..... ...........+-.+.|.||.|++.|.+++.+...
T Consensus 43 ~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n~ 96 (127)
T 1uey_A 43 NNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNS 96 (127)
T ss_dssp CSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEECCEEEEEES
T ss_pred CCCCceEEEEEEEECCCCCCccEEEeeeCCCceEEEecCCCCCEEEEEEEEEeC
Confidence 3556666666665432 11222222222233468899999999999997543
No 274
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=30.88 E-value=28 Score=32.73 Aligned_cols=22 Identities=36% Similarity=0.274 Sum_probs=19.9
Q ss_pred cceEEEcCCCCCCEEEEEEEec
Q 001065 983 SGSYRLRGLHPDTTYVIKVVKK 1004 (1167)
Q Consensus 983 ~G~~~i~gL~pg~~y~v~~~~~ 1004 (1167)
.-.+.|.||.|++.|.|+|.+-
T Consensus 74 ~~~~~l~~L~p~T~Y~~~V~A~ 95 (120)
T 1ujt_A 74 ERSAVLVNLKKGVTYEIKVRPY 95 (120)
T ss_dssp CCEEEEESCCSSEEEEEEEEEE
T ss_pred cCEEEECCCCCCCEEEEEEEEE
Confidence 4589999999999999999975
No 275
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=30.66 E-value=63 Score=30.60 Aligned_cols=12 Identities=42% Similarity=0.819 Sum_probs=9.7
Q ss_pred cCCCcceEEeec
Q 001065 903 NLFPGNFYLRPL 914 (1167)
Q Consensus 903 ~L~PG~Y~~~~~ 914 (1167)
+|.||.|||.-.
T Consensus 94 ~~~pGkYYl~Vy 105 (119)
T 1nqj_A 94 KLRPGKYYLLVY 105 (119)
T ss_dssp EECSEEEEEEEE
T ss_pred EcCCcEEEEEEE
Confidence 578999999754
No 276
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=30.62 E-value=28 Score=33.77 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.4
Q ss_pred cCcceEEEcCCCCCCEEEEEEEec
Q 001065 981 DTSGSYRLRGLHPDTTYVIKVVKK 1004 (1167)
Q Consensus 981 d~~G~~~i~gL~pg~~y~v~~~~~ 1004 (1167)
-+.=.++|.||+|++.|.++|.+-
T Consensus 79 g~~ts~~v~~L~P~T~Y~~rV~A~ 102 (137)
T 1wk0_A 79 GEETNITLNDLKPAMDYHAKVQAE 102 (137)
T ss_dssp ESCSEEEECSCCTTCEECEEEEEE
T ss_pred cCccEEEEcCCCCCCEEEEEEEEE
Confidence 344678999999999999999874
No 277
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.36 E-value=25 Score=32.05 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.8
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|.||.|++.|.++|.+..
T Consensus 74 ~~~~~~i~~L~p~t~Y~~~V~A~n 97 (121)
T 2dlh_A 74 DSQITTIGNLVPQKTYSVKVLAFT 97 (121)
T ss_dssp SCSEECCBSCCSSCEEEEEEEEEE
T ss_pred CceEEEecCCCCCCEEEEEEEEEe
Confidence 456899999999999999999753
No 278
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.84 E-value=40 Score=31.13 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=21.1
Q ss_pred cCcceEEEcCCCCCCEEEEEEEecc
Q 001065 981 DTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 981 d~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
...-.|.|.||.|++.|.|+|.+..
T Consensus 76 ~~~~~~~l~~L~p~t~Y~~~V~A~n 100 (124)
T 2dbj_A 76 QNGSRARISVQVHNATCTVRIAAVT 100 (124)
T ss_dssp STTSCEEEECCCSSSEEEECEEEEE
T ss_pred CCcceEEecCCCCCCEEEEEEEEEC
Confidence 3445899999999999999999753
No 279
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A
Probab=28.74 E-value=84 Score=31.64 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=21.8
Q ss_pred ecCcceEEEcCCCCCCEEEEEEEecc
Q 001065 980 TDTSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 980 Td~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
....-.|.|.||.||+.|.|+|++..
T Consensus 161 ~~~~~~~~l~~L~p~t~Y~v~Vra~~ 186 (210)
T 3n06_B 161 AGQQTEFKILSLHPGQKYLVQVRCKP 186 (210)
T ss_dssp EETCSEEEECCCCTTCEEEEEEEEEE
T ss_pred ccCceEEEEeccCCCCEEEEEEEEec
Confidence 34556899999999999999999753
No 280
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=28.72 E-value=29 Score=32.26 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.7
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|.||.|++.|.+++.+..
T Consensus 75 ~~~~~~i~~L~p~t~Y~~~V~A~n 98 (132)
T 1x5h_A 75 TQLSQLIEGLDRGTEYNFRVAALT 98 (132)
T ss_dssp TCCEEEEECCCSSCEEEEECEEEE
T ss_pred CccEEEeCCCCCCCEEEEEEEEEc
Confidence 456899999999999999999753
No 281
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.59 E-value=12 Score=33.93 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.9
Q ss_pred CcceEEEcCCCCCCEEEEEEEecc
Q 001065 982 TSGSYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 982 ~~G~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
..-.|.|+||.|++.|.|+|.+..
T Consensus 59 ~~~~~~l~~L~p~t~Y~~~V~A~~ 82 (105)
T 2ekj_A 59 ARSHVTLPDLQAATKYRVLVSAIY 82 (105)
T ss_dssp TSSEEEECSCCSSCCCBCBBCBBC
T ss_pred CcCEEEeCCCCCCCEEEEEEEEEe
Confidence 456899999999999999999754
No 282
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.96 E-value=1.3e+02 Score=27.28 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=27.4
Q ss_pred ceEEEEEeCCC--cEEEeEEecC-CcEEE--eCCCCCccEEEEEEcC
Q 001065 53 HVTVELRTLDG--LVKESTQCAP-NGYYF--IPVYDKGSFVIKVNGP 94 (1167)
Q Consensus 53 gv~v~L~~~~G--~~~~~t~t~~-nG~y~--~~~l~~G~Y~l~~~~P 94 (1167)
.++|++..++| ..+.....+. ||.|. +....+|.|.|.++--
T Consensus 50 ~~~v~i~~p~~~~~~~~~~v~D~~dGty~v~y~p~~~G~y~i~V~~~ 96 (113)
T 2ds4_A 50 NVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIK 96 (113)
T ss_dssp CEEEEEEESSCSSCCCEEEEECCSSSEEEEEEECSSSEEEEEEEEES
T ss_pred eEEEEEEecCCCCceeEEEEEECCCCEEEEEEEeCCCeEEEEEEEEC
Confidence 46888888775 3333344554 88777 3344789998887753
No 283
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens}
Probab=27.43 E-value=90 Score=32.87 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=34.0
Q ss_pred CCCceeceEEEEcceeeeEeCCCc-eEEECcCCCcc-EEEEEEe
Q 001065 336 NDMGVEGVKILVDGHERSITDRDG-YYKLDQVTSNR-YTIEAVK 377 (1167)
Q Consensus 336 ~G~pl~Ga~V~l~G~~~~~TD~dG-~y~~~~L~pG~-Y~I~~~~ 377 (1167)
++.+|.+-+++-+|+.++..+.++ .|++.+|.|.+ |++++.+
T Consensus 176 ~~~GI~gY~ly~~g~~v~~v~~~~tsyt~~gLk~~TeYsF~V~A 219 (238)
T 2w1n_A 176 TTEGLEGYILYKDGKKVAEIGKDETSYTFKKLNRHTIYNFKIAA 219 (238)
T ss_dssp CCTTEEEEEEEETTEEEEEEETTCCEEEECSCCTTCEEEEEEEE
T ss_pred CCCCceeEEEEeCCceeEEeeccceEEEecCCCCCCEEEEEEEE
Confidence 344588888888898888888887 89999999987 8877665
No 284
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A
Probab=26.80 E-value=1.3e+02 Score=26.88 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=23.6
Q ss_pred eeEEEecCCCcEEEcccCCcc-EEEEEEee
Q 001065 527 KTVSLTDDSDQFLFRDVLPGK-YRLEVKRT 555 (1167)
Q Consensus 527 ~~~~~Td~~G~f~f~~L~PG~-Y~v~~~~~ 555 (1167)
....+....-++.+.+|.||+ |+|.+.+-
T Consensus 50 ~~~~v~g~~~s~~l~~L~PgT~Y~V~v~a~ 79 (95)
T 2h41_A 50 QYLDLPSTATSVNIPDLLPGRKYIVNVYQI 79 (95)
T ss_dssp EEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred eEEECCCCccEEEECCCCCCCEEEEEEEEE
Confidence 345566778899999999998 99999853
No 285
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=26.21 E-value=88 Score=31.50 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=22.5
Q ss_pred eecCcceEEEcCCCCCCEEEEEEEeccC
Q 001065 979 VTDTSGSYRLRGLHPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 979 ~Td~~G~~~i~gL~pg~~y~v~~~~~~~ 1006 (1167)
+....=+|.|.||.|++.|.+++.+-..
T Consensus 152 v~~~~t~~~l~gL~p~t~Y~~~V~A~~~ 179 (195)
T 2qbw_A 152 VPYSSSTATISGLKPGVDYTITVYAYSD 179 (195)
T ss_dssp EETTCSEEEECSCCTTCEEEEEEEEESS
T ss_pred eCCCCCEEEeCCCCCCCEEEEEEEEEeC
Confidence 3334468999999999999999998543
No 286
>2xet_A CAF1A usher, F1 capsule-anchoring protein; transport protein; 1.60A {Yersinia pestis}
Probab=25.91 E-value=90 Score=27.63 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=35.3
Q ss_pred EEEEEEEcCCCCccC-ccEE-EEEeCCCCeeeEEeecCcceEEEcCCCCCCEEEEEEE
Q 001065 947 SATGTITLLSGQPKD-GVSV-EARSESKGYYEETVTDTSGSYRLRGLHPDTTYVIKVV 1002 (1167)
Q Consensus 947 s~~G~V~~~~g~p~~-gv~v-~~~~~~~~~~~~~~Td~~G~~~i~gL~pg~~y~v~~~ 1002 (1167)
.+.=+++.-+|+|+| |+.| . +.++ ........+|...|+||.+... +.++
T Consensus 3 ~~l~~l~~~dG~~lPfGa~V~~--~~~g--~~~giVg~~G~vyl~g~~~~~~--L~V~ 54 (89)
T 2xet_A 3 RLFLHLKRSDNKPVPFGSIVTI--EGQS--SSSGIVGDNSGVYLTGLPKKSK--ILVK 54 (89)
T ss_dssp EEEEEEEETTSCBCCTTCEEEE--TTCC--SCCEECCTTSEEEEEEECSEEE--EEEE
T ss_pred EEEEEEEcCCCCcCCCccEEEE--CCCC--CEEEEEcCCCEEEEECCCCCCE--EEEE
Confidence 344567778999988 7776 4 3221 2357889999999999987754 4454
No 287
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=25.78 E-value=1.3e+02 Score=27.56 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=31.9
Q ss_pred ccceEEEEEeCCCcEEEeEEecC-CcEEE---eCCCCCccEEEEEEcC
Q 001065 51 YSHVTVELRTLDGLVKESTQCAP-NGYYF---IPVYDKGSFVIKVNGP 94 (1167)
Q Consensus 51 ~sgv~v~L~~~~G~~~~~t~t~~-nG~y~---~~~l~~G~Y~l~~~~P 94 (1167)
-..+++.+..++|........+- ||.|. .|- .+|.|.|.++--
T Consensus 30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~-e~G~h~v~V~~~ 76 (102)
T 2dlg_A 30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQ-EMGVHTVSVKYR 76 (102)
T ss_dssp GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCC-TTCEEEEEEESS
T ss_pred CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEec-CCEeEEEEEEEC
Confidence 34679999999997666555544 88887 355 789999988754
No 288
>4eiu_A Uncharacterized hypothetical protein; PF12866 family protein, DUF3823, structural genomics, joint for structural genomics, JCSG; HET: PGE; 1.90A {Bacteroides uniformis}
Probab=25.33 E-value=1.8e+02 Score=31.05 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=43.9
Q ss_pred eeeEEEEEEEccCCCCCccc------ceEEEEECCcceee------ceeecCCceEEEecCCCcceEEeec
Q 001065 856 KLSQISVRIYSKDDAGEPIP------SVLLSLSGDDGYRN------NSVSWAGGSFHFDNLFPGNFYLRPL 914 (1167)
Q Consensus 856 ~l~~i~~~v~~~~~~~~pl~------gvllslsg~~~~r~------n~~T~~~G~~~f~~L~PG~Y~~~~~ 914 (1167)
+-+.+..+|.|. .+|||+. |+.|.|--- +|.. +.....||+|.=.-|+.|+|-+++.
T Consensus 8 P~s~l~G~ivd~-~tGE~i~~~~g~~gv~i~l~E~-g~~~~~~~~~~~~v~~DGtf~Nt~lF~G~Yki~~~ 76 (249)
T 4eiu_A 8 PSETIWGEVVDE-ATGKRVLTDQGSEGIRVRLTEL-SWGDNVQHNPDFYCMMDGTFQNTKIFKGEYNVRID 76 (249)
T ss_dssp CCEEEEEEEEET-TTCCBCCCCSSTTSCEEEEEEC-CSSCCBCCSCCEECCTTSEEEEEEECSEEEEEEEE
T ss_pred CcceeEEEEEEC-CCCCEeeeccCCCceEEEEEec-ccccCCCccCCEEECCCCceeeeeEEcceeEEEeC
Confidence 557888999986 3488885 477777654 5633 4567889999988999999999875
No 289
>3klq_A Putative pilus anchoring protein; CNAB fold, inverse IGG fold, polyproline-II-like helix, cell; 1.90A {Streptococcus pyogenes}
Probab=25.21 E-value=2.1e+02 Score=27.86 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=40.9
Q ss_pred cccEEEEEEcCCCccc-ceeeeecCCeEEEEE----EcCeeEEEEEEeecCCCCCCeeeeCceEEEEE
Q 001065 417 GNKVKVALTHGPDKVK-PQVKQTDNNGNFCFE----VPPGEYRLSAMAATPESSSGILFLPPYADVVV 479 (1167)
Q Consensus 417 ~~~a~VtL~~~~~~~~-~~~~~Td~~G~f~f~----L~pG~Y~v~~~~~~~~~~~G~~~~p~~~~V~V 479 (1167)
.....++|...+ .+. ..+...+++|+..|. =.||.|+-++.... ....|+.+.+..+.|+|
T Consensus 23 ~~~Fsf~L~~~d-PmP~~~tvt~~a~G~v~F~~i~f~~~G~Y~YtI~E~~-G~~~gvtYD~~~y~VtV 88 (141)
T 3klq_A 23 STPFSVALESID-AMKTIEEITIAGSGKASFSPLTFTTVGQYTYRVYQKP-SQNKDYQADTTVFDVLV 88 (141)
T ss_dssp CCEEEEEEEETT-TTEEEEEEEEESSEEEECCCEEECSCEEEEEEEEECC-CSSTTEECCCCEEEEEE
T ss_pred CceEEEEEEeCC-CCCCcEEEEEcCCCcEEeCceEeCCCEEEEEEEEEeC-CCCCCcEEcCCEEEEEE
Confidence 356677776333 111 245566889998885 47899888777642 34578888888777776
No 290
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=25.01 E-value=84 Score=28.89 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=17.0
Q ss_pred EccccCceEEEEEE---cCCceeEeecceEEEE
Q 001065 176 FKNIIPGKYKLRAS---HPNLSVEVRGSTEVEL 205 (1167)
Q Consensus 176 f~~l~pG~Y~l~~~---~~g~~~~~~~~~~V~v 205 (1167)
+..|+||+|+|... .+|... +++..|+|
T Consensus 73 l~~L~~G~YtV~WrvvS~DGH~~--~G~~~FtV 103 (104)
T 1lyq_A 73 REPLPAGTYRVDWRAVSSDTHPI--TGNYTFTV 103 (104)
T ss_dssp SSCCCSEEEEEEEEECCTTSCCE--EEEEEEEE
T ss_pred CCCCCCceEEEEEEEEecCCCcc--CCEEEEEE
Confidence 34689999999753 334333 34455554
No 291
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=24.62 E-value=80 Score=28.93 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=25.3
Q ss_pred CCcccceEEEEEeCCCcEEEe------E--EecC-CcE-EE--eCCCCCccEEEE
Q 001065 48 RLDYSHVTVELRTLDGLVKES------T--QCAP-NGY-YF--IPVYDKGSFVIK 90 (1167)
Q Consensus 48 ~i~~sgv~v~L~~~~G~~~~~------t--~t~~-nG~-y~--~~~l~~G~Y~l~ 90 (1167)
++......|+|++.+|..+.. . ..++ ++. +. ++.|.+|.|+|+
T Consensus 28 ~v~~~~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~G~YtV~ 82 (102)
T 2c9r_A 28 NLVTQFSGAKLVMTAMPGMEHSPMAVKAAVSGGGDPKTMVITPASPLTAGTYKVD 82 (102)
T ss_dssp CCCGGGCEEEEEEEECC-----CEEECEEEEECSSTTEEEEEESSCCCSEEEEEE
T ss_pred CCccCccEEEEECCCCCeeeeccccccccceecCCCCcEEEEECCCCCCceEEEE
Confidence 343344578888888876554 3 3343 454 34 567899999994
No 292
>3g3l_A Putative uncharacterized membrane-associated PROT; YP_211325.1, putative membrane-associated protein of unknown function; 2.20A {Bacteroides fragilis nctc 9343}
Probab=24.44 E-value=68 Score=32.91 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=43.6
Q ss_pred ceEEEEEEEeC-CCCceeceEEEEcceeee-EeCCCceEEECcCCCccEEEEEEeccccc
Q 001065 325 GFSVGGRVVDE-NDMGVEGVKILVDGHERS-ITDRDGYYKLDQVTSNRYTIEAVKVHYKF 382 (1167)
Q Consensus 325 g~sV~G~V~d~-~G~pl~Ga~V~l~G~~~~-~TD~dG~y~~~~L~pG~Y~I~~~~~~y~~ 382 (1167)
.+-|.|.|.+. .|+-|.-|+|+|+|+.+. .-+.+|.|.-++ |.+.+++.+|..
T Consensus 14 KYyIaGtiTdatTGq~LttAtVTlgg~sVt~~fN~~v~ykaeg-----yslvVsa~gYy~ 68 (327)
T 3g3l_A 14 KYYIAGTITDATTGQELTTAKVTLGDKSVTSSFNEQVNYKAEG-----YALVVSADGYYP 68 (327)
T ss_dssp EEEEEEEEEETTTCCBCTTCEEEETTEEECSEEEEEECCCTTC-----EEEEEECTTBCC
T ss_pred eEEEEEEeeeccccceEEEEEEEECCeEEeeeccceeeEeecC-----ceEEEEecCcee
Confidence 36688999997 699999999999999884 667778887655 999999998843
No 293
>3klq_A Putative pilus anchoring protein; CNAB fold, inverse IGG fold, polyproline-II-like helix, cell; 1.90A {Streptococcus pyogenes}
Probab=23.87 E-value=1.6e+02 Score=28.78 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=27.5
Q ss_pred cCCCcEEEccc---CCccEEEEEEeecccccccCCCceEEeeeEEEEEe
Q 001065 533 DDSDQFLFRDV---LPGKYRLEVKRTSREASSMEDNWCWEQSFIGVDVG 578 (1167)
Q Consensus 533 d~~G~f~f~~L---~PG~Y~v~~~~~~~~~~~~~~~~cw~~~~~~v~V~ 578 (1167)
+++|+..|..| .||.|+-.+...+ -...++.||.....|+|.
T Consensus 45 ~a~G~v~F~~i~f~~~G~Y~YtI~E~~----G~~~gvtYD~~~y~VtV~ 89 (141)
T 3klq_A 45 AGSGKASFSPLTFTTVGQYTYRVYQKP----SQNKDYQADTTVFDVLVY 89 (141)
T ss_dssp ESSEEEECCCEEECSCEEEEEEEEECC----CSSTTEECCCCEEEEEEE
T ss_pred cCCCcEEeCceEeCCCEEEEEEEEEeC----CCCCCcEEcCCEEEEEEE
Confidence 56777777655 4999666655321 124689999998877665
No 294
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=23.82 E-value=1.3e+02 Score=27.83 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=29.4
Q ss_pred cceEEEEEeCCCcEEEeEEecC-CcEEE---eCCCCCccEEEEEEc
Q 001065 52 SHVTVELRTLDGLVKESTQCAP-NGYYF---IPVYDKGSFVIKVNG 93 (1167)
Q Consensus 52 sgv~v~L~~~~G~~~~~t~t~~-nG~y~---~~~l~~G~Y~l~~~~ 93 (1167)
..++|++..++|..+.....+. ||.|. .|. .+|.|.|.++-
T Consensus 42 ~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~-~~G~y~i~V~~ 86 (113)
T 2dia_A 42 GALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPL-TAGMYTLTMKY 86 (113)
T ss_dssp CCEEEEEEETTTEECEEEEEECTTSEEEEEEECS-SCEEEEEEEEE
T ss_pred ccEEEEEECCCCCEeeEEEEECCCCEEEEEEEeC-CCccEEEEEEE
Confidence 3678888888886655555555 88777 354 78999988875
No 295
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=23.09 E-value=64 Score=40.07 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=20.8
Q ss_pred EeCCCCeEEEcccCCccEEEEEEEec
Q 001065 269 VSDADGKFMFKSVPCGQYELVPHYKG 294 (1167)
Q Consensus 269 ~TD~~G~f~f~~LppG~Y~v~~~~~~ 294 (1167)
.++...+..|.+||||+|++.+....
T Consensus 733 ~~~~~~~~~ytnL~pG~Y~f~V~a~~ 758 (781)
T 3v9f_A 733 TINEQNSVTFRNIPPGKYEFLVKARL 758 (781)
T ss_dssp EESSCSEEEECSCCSEEEEEEEEEEE
T ss_pred CcCCcceEEEcCCCCceEEEEEEEEC
Confidence 34567889999999999999885443
No 296
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Probab=22.99 E-value=5.5e+02 Score=25.21 Aligned_cols=25 Identities=12% Similarity=-0.109 Sum_probs=20.8
Q ss_pred CcceEEEcCC-CCCCEEEEEEEeccC
Q 001065 982 TSGSYRLRGL-HPDTTYVIKVVKKDG 1006 (1167)
Q Consensus 982 ~~G~~~i~gL-~pg~~y~v~~~~~~~ 1006 (1167)
..-.+.|.+| .|++.|.++|.+...
T Consensus 60 ~~~~~~i~~L~~~~t~Y~~~V~A~n~ 85 (215)
T 1bqu_A 60 TPTSCTVDYSTVYFVNIEVWVEAENA 85 (215)
T ss_dssp CTTEEECSSCCCTTSCEEEEEEEEET
T ss_pred CcceEEEcCCccccccEEEEEEEEec
Confidence 3467999999 999999999997543
No 297
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=22.82 E-value=1.1e+03 Score=28.53 Aligned_cols=222 Identities=11% Similarity=0.041 Sum_probs=105.7
Q ss_pred eeEEEEEEEccCCCCCcccceEEEEECCcc--eee-ce-ee---cCCceEEEecCC---CcceEEeec-cCcccc-CC--
Q 001065 857 LSQISVRIYSKDDAGEPIPSVLLSLSGDDG--YRN-NS-VS---WAGGSFHFDNLF---PGNFYLRPL-LKEYAF-SP-- 922 (1167)
Q Consensus 857 l~~i~~~v~~~~~~~~pl~gvllslsg~~~--~r~-n~-~T---~~~G~~~f~~L~---PG~Y~~~~~-~key~~-~p-- 922 (1167)
.|.+.+..... |.|.+.++-...|..+ ++. .+ +. +.+.++.|...+ -|.|.+..+ +..|.- .|
T Consensus 91 ~g~l~v~c~~~---g~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~ 167 (731)
T 2v5y_A 91 PGLLNVYVKVN---NGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPH 167 (731)
T ss_dssp SEEEEEEEEET---TCCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCE
T ss_pred cceEEEEEecC---CCCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccc
Confidence 34555655533 7889999888888743 221 11 11 344445555433 354443322 112211 11
Q ss_pred --CceeEEecCCcEEEEEEEEEeeeEEEEEEEEcCCCCccCccEEEEEeCCC-CeeeE--E---eecCcceEEEcCCCCC
Q 001065 923 --PAQAIELGSGESREVIFQATRVAYSATGTITLLSGQPKDGVSVEARSESK-GYYEE--T---VTDTSGSYRLRGLHPD 994 (1167)
Q Consensus 923 --~~~~i~v~~G~~~~v~~~~~r~~~s~~G~V~~~~g~p~~gv~v~~~~~~~-~~~~~--~---~Td~~G~~~i~gL~pg 994 (1167)
..+.+++.+|++..+.-.+ .|.|.+.+.+-....++ .+... . ....+|.+.|++|.|.
T Consensus 168 ~~~~~~~~v~~G~~v~l~C~~--------------~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~ 233 (731)
T 2v5y_A 168 FLRIQNVEVNAGQFATFQCSA--------------IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR 233 (731)
T ss_dssp ECCCCCEEEETTSCEEEEEEE--------------ESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTT
T ss_pred cccccceEEeCCCcEEEEEEe--------------CCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccc
Confidence 2234678888877665443 35555555422211111 11000 0 0122489999999999
Q ss_pred CEEEEEEEeccCCCCcceeecCCceEEEEecCcccccceEEEEecCCeEEEEEEEEecccccccceeEEEEEecCCCCce
Q 001065 995 TTYVIKVVKKDGFGSTKIERASPESVTVKVGSGDIKGLDFLVFEQPEKTILSGHVEGNRIKELNSHLLVEIKSASDTSKV 1074 (1167)
Q Consensus 995 ~~y~v~~~~~~~~~~~~i~~~~p~~~~v~v~~~d~~~~~f~~~~~~~~~~i~g~V~~~~~~~~~~~l~v~l~~~~~~~~v 1074 (1167)
+.|..++.+....|. ....+..+.|...+.-......+... ...+.|+......+-+..+....|+.+..+.. .
T Consensus 234 d~g~Y~c~A~n~~G~---~~s~~~~l~V~~~P~~~~~p~~~~~~-~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~--~ 307 (731)
T 2v5y_A 234 DAGKYRCMIRTEGGV---GISNYAELVVKEPPVPIAPPQLASVG-ATYLWIQLNANSINGDGPIVAREVEYCTASGS--W 307 (731)
T ss_dssp TCEEEEEEEEETTEE---EECCCEEEEEECCCCBSSCCEEEEEC-SSCEEEECCCSSBSSCSCCCEEEEEEEESSSS--C
T ss_pred cCeEEEEEEECCCCC---cceeeEEEEEecCCCCCCCcceeccC-CceEEEEeCCcccCCCCccEEEEEEEEECCCC--c
Confidence 966666554322121 01223345555444434444444442 23233332211110012233445665554332 2
Q ss_pred EEEEeeCCceeEEeccCCCC-cEEEEEEe
Q 001065 1075 ESVISLPMSNFFQVKDLPKG-KHLLQLRS 1102 (1167)
Q Consensus 1075 ~~~~~~~~~~~f~~~~l~~~-~y~v~l~s 1102 (1167)
.. ........+.+..|.++ .|.+++..
T Consensus 308 ~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A 335 (731)
T 2v5y_A 308 ND-RQPVDSTSYKIGHLDPDTEYEISVLL 335 (731)
T ss_dssp EE-EEECCSSEEEECSCCTTCEEEEEEEE
T ss_pred eE-EeccCcceEEEeCCCCCCEEEEEEEE
Confidence 22 22344577888899887 57777654
No 298
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=22.48 E-value=68 Score=39.94 Aligned_cols=41 Identities=12% Similarity=0.337 Sum_probs=26.2
Q ss_pred eCCCCeEEEcccCCccEEEEEEEecCCeEEEecCceEEEEE
Q 001065 270 SDADGKFMFKSVPCGQYELVPHYKGENTVFDVSPSLVSMSV 310 (1167)
Q Consensus 270 TD~~G~f~f~~LppG~Y~v~~~~~~~~~~~~~~P~~~~vtV 310 (1167)
+....+..|.+||||+|++.+......-.+.-.+..+.|.|
T Consensus 740 ~~~~~~~~ytnL~pG~Y~f~V~a~n~~g~w~~~~~~l~i~I 780 (795)
T 4a2l_A 740 LTDSRTVSYSNLPQGTYQFLVKAANSDGKWNPIPTALEIIV 780 (795)
T ss_dssp ESSCCEEEEECCCSEEEEEEEEEECTTSCBCSSCEEEEEEE
T ss_pred CCCcCeEEecccCCCeEEEEEEEECCCCccCCCceEEEEEE
Confidence 35677899999999999998864443322222233444444
No 299
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A
Probab=22.26 E-value=4.4e+02 Score=26.08 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=18.0
Q ss_pred eEEEcCCCCCCEEEEEEEecc
Q 001065 985 SYRLRGLHPDTTYVIKVVKKD 1005 (1167)
Q Consensus 985 ~~~i~gL~pg~~y~v~~~~~~ 1005 (1167)
.|.+.+|.|+..|.+++.+..
T Consensus 69 ~~~~~~L~~~~~Y~~~V~A~N 89 (215)
T 1cd9_B 69 SIPRKNLLLYQYMAIWVQAEN 89 (215)
T ss_dssp EEEGGGCCTTSCEEEEEEEEE
T ss_pred EECCcccccceEEEEEEEEEC
Confidence 577889999999999998753
No 300
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=22.14 E-value=98 Score=28.36 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=27.8
Q ss_pred ceEEEEEeCCCcEEEeEEecC-CcEEE--eCCCCCccEEEEEEc
Q 001065 53 HVTVELRTLDGLVKESTQCAP-NGYYF--IPVYDKGSFVIKVNG 93 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t~t~~-nG~y~--~~~l~~G~Y~l~~~~ 93 (1167)
.++|.+.+++|..+.....+. ||.|. +-...+|.|.|.++-
T Consensus 44 ~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~ 87 (108)
T 2dj4_A 44 PLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKY 87 (108)
T ss_dssp CEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEE
T ss_pred eEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEE
Confidence 578888888886544444444 78777 333378999888775
No 301
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=21.42 E-value=1.1e+02 Score=27.68 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=27.0
Q ss_pred ceEEEEEeCCCcEEEeEEecC-CcEEE--eCCCCCccEEEEEEc
Q 001065 53 HVTVELRTLDGLVKESTQCAP-NGYYF--IPVYDKGSFVIKVNG 93 (1167)
Q Consensus 53 gv~v~L~~~~G~~~~~t~t~~-nG~y~--~~~l~~G~Y~l~~~~ 93 (1167)
.++|.+.+++|..+.....+. ||.|. +--..+|.|.|.++-
T Consensus 40 ~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~ 83 (100)
T 3rgh_A 40 ELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKY 83 (100)
T ss_dssp CEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEE
T ss_pred eEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEE
Confidence 678888888886544444444 78776 223368888887764
No 302
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=21.03 E-value=83 Score=28.93 Aligned_cols=43 Identities=9% Similarity=-0.001 Sum_probs=25.2
Q ss_pred CCcccceEEEEEeCCCcEEEe-------E--EecC-CcE-EE--eCCCCCccEEEE
Q 001065 48 RLDYSHVTVELRTLDGLVKES-------T--QCAP-NGY-YF--IPVYDKGSFVIK 90 (1167)
Q Consensus 48 ~i~~sgv~v~L~~~~G~~~~~-------t--~t~~-nG~-y~--~~~l~~G~Y~l~ 90 (1167)
++......|+|++.+|..+.. . ..++ ++. +. ++.|.+|.|+|+
T Consensus 29 ~v~~~~s~v~v~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~G~YtV~ 84 (104)
T 1lyq_A 29 NLTVKFSGAKLTMTGMKGMSSHSPMPVAAKVAPGADPKSMVIIPREPLPAGTYRVD 84 (104)
T ss_dssp CCCGGGCEEEEEEEEEC---CCCCEECCEEEEECSSTTEEEEEESSCCCSEEEEEE
T ss_pred CCcccccEEEEECCCCCeeeeccccccccceeecCCCCcEEEEECCCCCCceEEEE
Confidence 344334578888888766544 3 2333 453 34 567899999994
No 303
>4g5a_A Uncharacterized protein; immunoglobulin - like beta-sandwich, structural genomics, JO center for structural genomics, JCSG; 1.69A {Bacteroides thetaiotaomicron}
Probab=20.79 E-value=2.1e+02 Score=24.68 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=33.0
Q ss_pred ccccccccccCCCCCcccceEEEEEeCCCcEEEeEEecC--CcEEE--eCCCCCccEEE
Q 001065 35 SSSLIKSRKATDARLDYSHVTVELRTLDGLVKESTQCAP--NGYYF--IPVYDKGSFVI 89 (1167)
Q Consensus 35 ~~~~~~~~~~sd~~i~~sgv~v~L~~~~G~~~~~t~t~~--nG~y~--~~~l~~G~Y~l 89 (1167)
|+.|--|.|. .|+.++|++.|.+.+.+.++-.-| .|.|. +..+.-|.|.|
T Consensus 31 sk~l~lnfkd-----~fa~i~vevkdiekqiv~~siifpv~ageytlyl~d~s~~~~el 84 (99)
T 4g5a_A 31 SKRLCLNFKD-----SFAPITVEVKDIEKQIVFQSIIFPVAAGEYTLYLGDLSLGQYEL 84 (99)
T ss_dssp TTEEEEEESS-----CCCCEEEEEECTTSCEEEEEEECCCSSEEEEEECTTCCSSEEEE
T ss_pred cceeEEeccc-----ccccEEEEeeehhheeeeeeEEEEeecceEEEEeCChhcCceEE
Confidence 3344445553 477789999999998888876544 56555 45555566665
No 304
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.64 E-value=1.8e+02 Score=26.27 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=30.2
Q ss_pred eEEEeCCCCeEEEcccC--CccEEEEEEEecCCeEEEecCceEEEEEe
Q 001065 266 CHAVSDADGKFMFKSVP--CGQYELVPHYKGENTVFDVSPSLVSMSVR 311 (1167)
Q Consensus 266 ~~~~TD~~G~f~f~~Lp--pG~Y~v~~~~~~~~~~~~~~P~~~~vtV~ 311 (1167)
+..+-..||.|.+.=.| +|.|+|...+.+.+ +..+...++|.
T Consensus 46 ~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~~----I~GSPF~v~V~ 89 (95)
T 2ee9_A 46 PEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSH----IPESPLQFYVN 89 (95)
T ss_dssp CEEEECSSSCEEEECCCCSSEEEEEEEEESSCB----CTTCSEEEEEC
T ss_pred cEEEeCCCCeEEEEEEecCCEeEEEEEEECCEE----CCCCCeEEEEe
Confidence 56667789999888777 79999999887765 34444445543
No 305
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=20.28 E-value=2.6e+02 Score=24.94 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=19.5
Q ss_pred eeeecCCeEEEEE---EcCeeEEEEEEe
Q 001065 435 VKQTDNNGNFCFE---VPPGEYRLSAMA 459 (1167)
Q Consensus 435 ~~~Td~~G~f~f~---L~pG~Y~v~~~~ 459 (1167)
...-..||.|++. -.+|.|+|.+.-
T Consensus 39 ~v~d~~dGtY~v~ytP~e~G~h~v~V~~ 66 (93)
T 2d7n_A 39 NITDNKDGTITVRYAPTEKGLHQMGIKY 66 (93)
T ss_dssp EEEECSSSCEEEEECCSSCEEEEEEEEE
T ss_pred EEEECCCCEEEEEEEccCCEEEEEEEEE
Confidence 3455678999987 455999999987
Done!