BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001066
(1167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 196 bits (499), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 156/272 (57%), Gaps = 12/272 (4%)
Query: 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGS 743
G++ + G + + +KE+V LPL +P F +G+ PPRG+LL+G PGTGKTL+ RA+
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 744 CARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ 803
+F G + + K G++E LR F+ AEK P+IIF DE+D +AP R +
Sbjct: 262 TGA-----FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 804 QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMED 863
+ +VS LL LMDGLK R V+V+ ATNRP ++DPALRR GRFDRE+ +P
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 864 RAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSA 923
R IL +HT+ K L+ +A T G GADL ALC++AA+ A+++ L ++
Sbjct: 377 RLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 924 AAEKAFCSKRVTLPSFAVEERDWLEALSCSPP 955
+ + S AV D+ ALS S P
Sbjct: 436 TIDAEVMN------SLAVTMDDFRWALSQSNP 461
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 196 bits (499), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 156/272 (57%), Gaps = 12/272 (4%)
Query: 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGS 743
G++ + G + + +KE+V LPL +P F +G+ PPRG+LL+G PGTGKTL+ RA+
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 744 CARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ 803
+F G + + K G++E LR F+ AEK P+IIF DE+D +AP R +
Sbjct: 262 TGA-----FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 804 QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMED 863
+ +VS LL LMDGLK R V+V+ ATNRP ++DPALRR GRFDRE+ +P
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 864 RAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSA 923
R IL +HT+ K L+ +A T G GADL ALC++AA+ A+++ L ++
Sbjct: 377 RLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 924 AAEKAFCSKRVTLPSFAVEERDWLEALSCSPP 955
+ + S AV D+ ALS S P
Sbjct: 436 TIDAEVMN------SLAVTMDDFRWALSQSNP 461
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 196 bits (499), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 156/272 (57%), Gaps = 12/272 (4%)
Query: 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGS 743
G++ + G + + +KE+V LPL +P F +G+ PPRG+LL+G PGTGKTL+ RA+
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 744 CARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ 803
+F G + + K G++E LR F+ AEK P+IIF DE+D +AP R +
Sbjct: 262 TGA-----FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 804 QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMED 863
+ +VS LL LMDGLK R V+V+ ATNRP ++DPALRR GRFDRE+ +P
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 864 RAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSA 923
R IL +HT+ K L+ +A T G GADL ALC++AA+ A+++ L ++
Sbjct: 377 RLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 924 AAEKAFCSKRVTLPSFAVEERDWLEALSCSPP 955
+ + S AV D+ ALS S P
Sbjct: 436 TIDAEVMN------SLAVTMDDFRWALSQSNP 461
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 196 bits (497), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/272 (40%), Positives = 156/272 (57%), Gaps = 12/272 (4%)
Query: 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGS 743
G++ V G + + +KE+V LPL +P F +G+ PPRG+LL+G PGTGKTL+ RA+
Sbjct: 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 744 CARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ 803
+F G + + K G++E LR F+ AEK P+IIF DE+D +AP R +
Sbjct: 262 TGA-----FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 804 QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMED 863
+ +VS LL LMDGLK R V+V+ ATNRP ++DPALRR GRFDRE+ +P
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 864 RAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSA 923
R IL +HT+ K L+ +A T G GADL ALC++AA+ A+++ L ++
Sbjct: 377 RLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 924 AAEKAFCSKRVTLPSFAVEERDWLEALSCSPP 955
+ + S AV D+ ALS S P
Sbjct: 436 TIDAE------VMNSLAVTMDDFRWALSQSNP 461
Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 139/230 (60%), Gaps = 11/230 (4%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+E + GL+DV R ++E+V P+ +P+ F G+TP +GVL +G PG GKTL+ +A+ C
Sbjct: 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+ + + KG + L + G++E +R +F A + P ++FFDE+D +A R
Sbjct: 536 -----QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590
Query: 805 DQTHSS---VVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSM 861
+ V++ +L MDG+ ++ +V +IGATNRP+ +DPA+ RPGR D+ IY PLP
Sbjct: 591 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 862 EDRAAILSLHTERWPKPVTGSL-LKWIAARTAGFAGADLQALCTQAAIIA 910
+ R AIL + + PV + L+++A T GF+GADL +C +A +A
Sbjct: 651 KSRVAILKANLRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 196 bits (497), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 156/272 (57%), Gaps = 12/272 (4%)
Query: 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGS 743
G++ + G + + +KE+V LPL +P F +G+ PPRG+LL+G PGTGKTL+ RA+
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 744 CARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ 803
+F G + + K G++E LR F+ AEK P+IIF DE+D +AP R +
Sbjct: 262 TGA-----FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 804 QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMED 863
+ +VS LL LMDGLK R V+V+ ATNRP ++DPALRR GRFDRE+ +P
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 864 RAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSA 923
R IL +HT+ K L+ +A T G GADL ALC++AA+ A+++ L ++
Sbjct: 377 RLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 924 AAEKAFCSKRVTLPSFAVEERDWLEALSCSPP 955
+ + S AV D+ ALS S P
Sbjct: 436 TIDAE------VMNSLAVTMDDFRWALSQSNP 461
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 139/230 (60%), Gaps = 11/230 (4%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+E + GL+DV R ++E+V P+ +P+ F G+TP +GVL +G PG GKTL+ +A+ C
Sbjct: 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+ + + KG + L + G++E +R +F A + P ++FFDE+D +A R
Sbjct: 536 -----QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590
Query: 805 DQTHSS---VVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSM 861
+ V++ +L MDG+ ++ +V +IGATNRP+ +DPA+ RPGR D+ IY PLP
Sbjct: 591 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 862 EDRAAILSLHTERWPKPVTGSL-LKWIAARTAGFAGADLQALCTQAAIIA 910
+ R AIL + + PV + L+++A T GF+GADL +C +A +A
Sbjct: 651 KSRVAILKANLRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 144/237 (60%), Gaps = 6/237 (2%)
Query: 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGS 743
G++ V G + + +KE+V LPL +P F +G+ PPRG+LL+G PGTGKTL+ RA+
Sbjct: 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261
Query: 744 CARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ 803
+F G + + K G++E LR F+ AEK P+IIF DE+D +AP R +
Sbjct: 262 TGA-----FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 804 QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMED 863
+ +VS LL LMDGLK R V+V+ ATNRP ++DPALRR GRFDRE+ +P
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 864 RAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEI 920
R IL +HT+ K L+ +A T G GADL ALC++AA+ A+++ L ++
Sbjct: 377 RLEILQIHTKNM-KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 151/261 (57%), Gaps = 11/261 (4%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
++ V GL I+ +KEV+ LP+ +PE F++LG+ P+GV+L+G PGTGKTL+ RA+
Sbjct: 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
R++ GA+ + KY+G+ R +R LF +A + PSIIF DEID + R
Sbjct: 207 DCKFIRVS-----GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS 261
Query: 805 DQTHSSVVSTLLAL---MDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSM 861
S V T+L L +DG ++ ++ +I ATNR + +DPAL RPGR DR+I FP PS+
Sbjct: 262 GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSV 321
Query: 862 EDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIAL--KRNFPLQE 919
RA IL +H+ + G L+ +A + G +GAD++ +CT+A + AL +R QE
Sbjct: 322 AARAEILRIHSRKM-NLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQE 380
Query: 920 ILSAAAEKAFCSKRVTLPSFA 940
A K + T S A
Sbjct: 381 DFELAVGKVMNKNQETAISVA 401
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 170 bits (431), Expect = 4e-42, Method: Composition-based stats.
Identities = 99/249 (39%), Positives = 152/249 (61%), Gaps = 13/249 (5%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+E + GL+ ++ ++EVV LPL +PE F+ +G+ PP+G+LL+G PGTGKTL+ +A+
Sbjct: 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV---- 71
Query: 745 ARGDKRIAYFARK-GADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ 803
+ A F R G++ + K++G+ ++ +F++A++ PSIIF DEID +A RT
Sbjct: 72 --ATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA 129
Query: 804 ---QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPS 860
D+ + LLA MDG +RG V +IGATNRP+ +DPA+ RPGRFDR I P P
Sbjct: 130 LTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 861 MEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALK--RNFPLQ 918
+ R IL +HT + L+ IA T G GA+L+A+CT+A + A++ R++
Sbjct: 190 EKGRLEILKIHTRKM-NLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTM 248
Query: 919 EILSAAAEK 927
+ A EK
Sbjct: 249 DDFRKAVEK 257
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 169 bits (429), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 136/233 (58%), Gaps = 9/233 (3%)
Query: 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIG 742
E + + GL+ I+ +KE V LPL +PE ++ +G+ PP+GV+L+G PGTGKTL+ +A+
Sbjct: 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238
Query: 743 SCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTR 802
+ RI G++ + KY+GD R R +F+VA + PSI+F DEID + R
Sbjct: 239 QTSATFLRIV-----GSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYD 293
Query: 803 QQDQTHSSVVSTLLAL---MDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLP 859
+ T+L L +DG RG V VI ATN+ E +DPAL RPGR DR+I F P
Sbjct: 294 SNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353
Query: 860 SMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALK 912
+ + IL +HT + +L + + +GAD+QA+CT+A ++AL+
Sbjct: 354 DLSTKKKILGIHTSKMNLSEDVNLETLVTTKD-DLSGADIQAMCTEAGLLALR 405
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 138/230 (60%), Gaps = 11/230 (4%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+E + GL+DV R ++E+V P+ +P+ F G+TP +GVL +G PG GKTL+ +A+ C
Sbjct: 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+ + KG + L + G++E +R +F A + P ++FFDE+D +A R
Sbjct: 74 QAN-----FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 128
Query: 805 DQTHSS---VVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSM 861
+ V++ +L MDG+ ++ +V +IGATNRP+ +DPA+ RPGR D+ IY PLP
Sbjct: 129 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188
Query: 862 EDRAAILSLHTERWPKPVTGSL-LKWIAARTAGFAGADLQALCTQAAIIA 910
+ R AIL + + PV + L+++A T GF+GADL +C +A +A
Sbjct: 189 KSRVAILKANLRK--SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 236
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 138/234 (58%), Gaps = 15/234 (6%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+ V G +D I ++EVV LPLL PE F LG+ PP+G+LL+G PGTGKTL RA+
Sbjct: 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAV---- 263
Query: 745 ARGDKRIAYFARK-GADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ 803
++ A F R G++ + KYVG+ R +R LF++A + IIFFDEID + R
Sbjct: 264 --ANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDD 321
Query: 804 QDQTHSSVVSTLLAL---MDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPS 860
+ V T+L L +DG RG++ V+ ATNRP +DPAL RPGR DR++ F LP
Sbjct: 322 GAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPD 381
Query: 861 MEDRAAILSLHTERWPKPVTGSLLKW--IAARTAGFAGADLQALCTQAAIIALK 912
+E RA I +H++ ++W I+ GA+L+++CT+A + A++
Sbjct: 382 LEGRANIFRIHSKSMS---VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 132/232 (56%), Gaps = 11/232 (4%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
F+ + GL + IR ++EV+ LPL PE F +G+ PP+GVLL+G PGTGKTL+ +A+ +
Sbjct: 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+ + + KY+G++ R +R +F A++ +P IIF DE+D + R +
Sbjct: 240 GAN-----FIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEG 294
Query: 805 DQTHSSVVSTLLAL---MDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSM 861
+ TL+ L MDG + G +I ATNRP+ +DPAL RPGR DR++ PLP+
Sbjct: 295 TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNE 354
Query: 862 EDRAAILSLHTERWPKPVTGSLLKWIAARTA-GFAGADLQALCTQAAIIALK 912
R I +HT + K TG A + + GF GAD++ T+A A++
Sbjct: 355 AGRLEIFKIHTAKVKK--TGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 136/236 (57%), Gaps = 9/236 (3%)
Query: 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG 747
+ L+D+ + ++ P+ P+ F LGL P GVLL G PG GKTL+ +A+
Sbjct: 12 IGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG-- 69
Query: 748 DKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQT 807
+ + + KG + L YVG++ER +R +FQ A+ P +IFFDE+D L P R+ ++
Sbjct: 70 ---LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA 126
Query: 808 HSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAI 867
VV+ LL MDGL++R V ++ ATNRP+ +DPA+ RPGR D+ ++ LP DR AI
Sbjct: 127 SVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI 186
Query: 868 LSLHTERWPKPVTGS--LLKWIAA--RTAGFAGADLQALCTQAAIIALKRNFPLQE 919
L T+ KP + L+ IA R + GADL AL +A+I AL++ Q+
Sbjct: 187 LKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQK 242
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 130/230 (56%), Gaps = 12/230 (5%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
F+ V G ++ I +KEVV L P F+ +G P+G+LL G PGTGKTL+ RA+ G
Sbjct: 15 FKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+ +F G+D + +VG ++R LF A+ P I+F DEID + R
Sbjct: 74 -----NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128
Query: 805 DQTH---SSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSM 861
H ++ LL MDG S+ ++V+ ATNRP+ +DPAL RPGRFD++I P M
Sbjct: 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDM 188
Query: 862 EDRAAILSLHTERWPKPVTGSL-LKWIAARTAGFAGADLQALCTQAAIIA 910
R IL +HT KP+ + L+ IA RT GF GADL+ L +AA++A
Sbjct: 189 LGRKKILEIHTRN--KPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLA 236
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 149 bits (377), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 129/230 (56%), Gaps = 12/230 (5%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
F+ V G ++ I +KEVV L P F+ +G P+G+LL G PGTG TL+ RA+ G
Sbjct: 15 FKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEA 73
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+ +F G+D + +VG ++R LF A+ P I+F DEID + R
Sbjct: 74 -----NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128
Query: 805 DQTH---SSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSM 861
H ++ LL MDG S+ ++V+ ATNRP+ +DPAL RPGRFD++I P M
Sbjct: 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDM 188
Query: 862 EDRAAILSLHTERWPKPVTGSL-LKWIAARTAGFAGADLQALCTQAAIIA 910
R IL +HT KP+ + L+ IA RT GF GADL+ L +AA++A
Sbjct: 189 LGRKKILEIHTRN--KPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLA 236
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 147 bits (372), Expect = 3e-35, Method: Composition-based stats.
Identities = 92/235 (39%), Positives = 133/235 (56%), Gaps = 12/235 (5%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
F+ +AG ++ + E+V L YPE + NLG P+GVLL G PGTGKTL+ +A+ G
Sbjct: 10 FKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG-- 66
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTR-- 802
+ + +F+ G+ + +VG ++R LF+ A+K PSIIF DEID + R
Sbjct: 67 ---EAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGG 123
Query: 803 --QQDQTHSSVVSTLLALMDGLKSRGS-VVVIGATNRPEAVDPALRRPGRFDREIYFPLP 859
+ ++ LLA MDG S + V+V+ ATNRPE +DPAL RPGRFDR++ P
Sbjct: 124 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 183
Query: 860 SMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN 914
R IL +H + K L+ +A TAG AGADL + +AA++A + N
Sbjct: 184 DFNGRVEILKVHI-KGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN 237
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 147 bits (370), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 127/235 (54%), Gaps = 13/235 (5%)
Query: 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIG 742
E + V GL I + E ++LP+ + F ++G+ P+G L++G PGTGKTL+ RA
Sbjct: 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARA--- 234
Query: 743 SCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTR 802
CA + + Y+G+ + +R F +A++ P+IIF DE+D + R
Sbjct: 235 -CA-AQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFD 292
Query: 803 QQDQTHSSVVSTLLALM---DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLP 859
+ V T+L L+ DG S V V+ ATNR + +DPAL R GR DR+I FPLP
Sbjct: 293 SEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLP 352
Query: 860 SMEDRAAILSLHTERWPKPVTGSLLKW--IAARTAGFAGADLQALCTQAAIIALK 912
S + RA IL +H+ + T + W +A T F GA L+A+ +A +IAL+
Sbjct: 353 SEDSRAQILQIHSRKM---TTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 143 bits (361), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 146/261 (55%), Gaps = 30/261 (11%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+ V GL + ++E V LPL+ + ++ +G+ PPRGVLL+G PGTGKT++V+A+ S
Sbjct: 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+ A+ G++ + KY+G+ R +R +F++A + PSIIF DE+D +A R Q
Sbjct: 231 -----KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ 285
Query: 805 ---DQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSM 861
D+ ++ LL MDG +V VI ATNR + +DPAL RPGR DR+I F PS+
Sbjct: 286 TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEF--PSL 343
Query: 862 EDR----------AAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIAL 911
DR A+ +SL E + L + R +GA + A+ +A + A+
Sbjct: 344 RDRRERRLIFGTIASKMSLAPE--------ADLDSLIIRNDSLSGAVIAAIMQEAGLRAV 395
Query: 912 KRNFPLQEILSAAAEKAFCSK 932
++N + IL + E+A+ ++
Sbjct: 396 RKNRYV--ILQSDLEEAYATQ 414
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 142 bits (359), Expect = 9e-34, Method: Composition-based stats.
Identities = 91/234 (38%), Positives = 127/234 (54%), Gaps = 12/234 (5%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
F VAG + + E+V L P F LG P+GVL+ G PGTGKTL+ +A+ G
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG-- 67
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+ ++ +F G+D + +VG ++R +F+ A+K P IIF DEID + R
Sbjct: 68 ---EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL 124
Query: 805 DQTHSSVVSTL---LALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSM 861
H TL L MDG + ++VI ATNRP+ +DPAL RPGRFDR++ LP +
Sbjct: 125 GGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 184
Query: 862 EDRAAILSLHTERWP-KPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN 914
R IL +H R P P + + IA T GF+GADL L +AA+ A + N
Sbjct: 185 RGREQILKVHMRRVPLAPDIDAAI--IARGTPGFSGADLANLVNEAALFAARGN 236
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 129/230 (56%), Gaps = 8/230 (3%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+ VAGL+ +KE VILP+ +P F TP RG+LL G PGTGK+ + +A+
Sbjct: 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAV---- 187
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
A +F+ +D + K++G++E+ ++ LFQ+A + +PSIIF DEID L R+ +
Sbjct: 188 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 247
Query: 805 DQTHSSVVSTLLALMDGLK-SRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMED 863
+ + + L M G+ ++V+GATN P +D A+RR RF++ IY PLP
Sbjct: 248 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA 305
Query: 864 RAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR 913
RAA+ LH +T + + + +T G++GAD+ + A + +++
Sbjct: 306 RAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 12/245 (4%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
F+ +AG + ++E+VILP L PE F L P RG+LL G PG GKT++ +A+
Sbjct: 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAA-- 170
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+ +F A KYVG+ E+ +R LF VA + QPSIIF D++D L C R+
Sbjct: 171 ---ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLL-CERREG 226
Query: 805 DQTHSSVVST-LLALMDGLKSRGS--VVVIGATNRPEAVDPALRRPGRFDREIYFPLPSM 861
+ S + T L DG++S G V+V+GATNRP+ +D A+ R RF + +Y LP+
Sbjct: 227 EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNE 284
Query: 862 EDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEIL 921
E R +L + P+T L +A T G++G+DL AL AA+ ++ P Q
Sbjct: 285 ETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN 344
Query: 922 SAAAE 926
+A+E
Sbjct: 345 MSASE 349
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 130/231 (56%), Gaps = 11/231 (4%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+E VAGL+ +KE VILP+ +P F P G+LL+G PGTGK+ + +A+
Sbjct: 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEA 108
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+F+ +D + K++G++E+ ++ LF +A + +PSIIF D++D L R +
Sbjct: 109 NS-----TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE 163
Query: 805 DQTHSSVVSTLLALMDGL--KSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSME 862
+ + + LL M+G+ S+G V+V+GATN P +D A+RR RF+R IY PLP +
Sbjct: 164 SEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 220
Query: 863 DRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR 913
R + ++ P +T + + A T G++G+D+ + A + +++
Sbjct: 221 ARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 129/230 (56%), Gaps = 8/230 (3%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+ VAGL+ +KE VILP+ +P F TP RG+LL G PGTGK+ + +A+
Sbjct: 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAV---- 65
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
A +F+ +D + K++G++E+ ++ LFQ+A + +PSIIF DEID L R+ +
Sbjct: 66 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 125
Query: 805 DQTHSSVVSTLLALMDGL-KSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMED 863
+ + + L M G+ ++V+GATN P +D A+RR RF++ IY PLP
Sbjct: 126 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHA 183
Query: 864 RAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR 913
RAA+ LH +T + + + +T G++GAD+ + A + +++
Sbjct: 184 RAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 130/231 (56%), Gaps = 11/231 (4%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+E VAGL+ +KE VILP+ +P F P G+LL+G PGTGK+ + +A+
Sbjct: 26 WEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEA 84
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+F+ +D + K++G++E+ ++ LF +A + +PSIIF DE+D L R +
Sbjct: 85 NS-----TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGE 139
Query: 805 DQTHSSVVSTLLALMDGL--KSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSME 862
+ + + LL M+G+ S+G V+V+GATN P +D A+RR RF+R IY PLP +
Sbjct: 140 SEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 196
Query: 863 DRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR 913
R + ++ P +T + + A T G++G+D+ + A + +++
Sbjct: 197 ARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 130/231 (56%), Gaps = 11/231 (4%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+E VAGL+ +KE VILP+ +P F P G+LL+G PGTGK+ + +A+
Sbjct: 35 WEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEA 93
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+F+ +D + K++G++E+ ++ LF +A + +PSIIF D++D L R +
Sbjct: 94 NS-----TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE 148
Query: 805 DQTHSSVVSTLLALMDGL--KSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSME 862
+ + + LL M+G+ S+G V+V+GATN P +D A+RR RF+R IY PLP +
Sbjct: 149 SEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 205
Query: 863 DRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR 913
R + ++ P +T + + A T G++G+D+ + A + +++
Sbjct: 206 ARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 130/231 (56%), Gaps = 11/231 (4%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+E VAGL+ +KE VILP+ +P F P G+LL+G PGTGK+ + +A+
Sbjct: 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEA 75
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+F+ +D + K++G++E+ ++ LF +A + +PSIIF D++D L R +
Sbjct: 76 NS-----TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE 130
Query: 805 DQTHSSVVSTLLALMDGL--KSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSME 862
+ + + LL M+G+ S+G V+V+GATN P +D A+RR RF+R IY PLP +
Sbjct: 131 SEASRRIKTELLVQMNGVGNDSQG-VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 187
Query: 863 DRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR 913
R + ++ P +T + + A T G++G+D+ + A + +++
Sbjct: 188 ARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 10/226 (4%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
+E +AG++ +KE+V+ P+L P+ F L PP+G+LL G PGTGKTL IG C
Sbjct: 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTL-----IGKC 136
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+F+ + K+VG+ E+ +R LF VA QP++IF DEID L R +
Sbjct: 137 IASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE 196
Query: 805 DQTHSSVVSTLLALMDG--LKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSME 862
++ + + L +DG S ++V+GATNRP+ +D A RR R + +Y PLP
Sbjct: 197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEAS 254
Query: 863 DRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAI 908
R I+ + ++ ++ I ++ F+GAD+ LC +A++
Sbjct: 255 ARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASL 300
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 122/225 (54%), Gaps = 13/225 (5%)
Query: 688 VAGLQDVIR-CMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCAR 746
+AG QDV + ++E+VILP + PE F L P +G+LL G PG GKTL+ RA+ C+
Sbjct: 23 IAG-QDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECS- 79
Query: 747 GDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQ 806
+ A KYVGD E+ +R LF VA QPSIIF DE+D L R+ + +
Sbjct: 80 ----ATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 135
Query: 807 THSSVVSTLLALMDGLKSR---GSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMED 863
+ + L DGL +VV+ ATNRP+ +D A R RF + +Y LP +
Sbjct: 136 ASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQT 193
Query: 864 RAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAI 908
R +L+ ++ P+ L+ +A T G++G+DL AL AA+
Sbjct: 194 RELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAAL 238
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 20/222 (9%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
F+ VAG ++ +KE+V L P F +G P+GVLL G PG GKT + RA+ G
Sbjct: 30 FKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCR---- 800
R+ + G+D + +VG ++R LF+ A++ P I+F DEID + R
Sbjct: 89 -----RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 143
Query: 801 ---TRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFP 857
+++QT ++ LL MDG + ++VV+ ATNRP+ +DPAL RPGRFDR+I
Sbjct: 144 GGGNDEREQT----LNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199
Query: 858 LPSMEDRAAILSLHTERWPKPVTGSL-LKWIAARTAGFAGAD 898
P ++ R IL +H KP+ + L +A RT GF GAD
Sbjct: 200 APDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 20/222 (9%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
F+ VAG ++ +KE+V L P F +G P+GVLL G PG GKT + RA+ G
Sbjct: 39 FKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCR---- 800
R+ + G+D + +VG ++R LF+ A++ P I+F DEID + R
Sbjct: 98 -----RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 152
Query: 801 ---TRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFP 857
+++QT ++ LL MDG + ++VV+ ATNRP+ +DPAL RPGRFDR+I
Sbjct: 153 GGGNDEREQT----LNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 858 LPSMEDRAAILSLHTERWPKPVTGSL-LKWIAARTAGFAGAD 898
P ++ R IL +H KP+ + L +A RT GF GAD
Sbjct: 209 APDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 20/222 (9%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
F+ VAG ++ +KE+V L P F +G P+GVLL G PG GKT + RA+ G
Sbjct: 39 FKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCR---- 800
R+ + G+D + +VG ++R LF+ A++ P I+F DEID + R
Sbjct: 98 -----RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 152
Query: 801 ---TRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFP 857
+++QT ++ LL MDG + ++VV+ ATNRP+ +DPAL RPGRFDR+I
Sbjct: 153 GGGNDEREQT----LNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 858 LPSMEDRAAILSLHTERWPKPVTGSL-LKWIAARTAGFAGAD 898
P ++ R IL +H KP+ + L +A RT GF GAD
Sbjct: 209 APDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 126 bits (316), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 20/222 (9%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
F+ VAG ++ +KE+V L P F +G P+GVLL G PG GKT + RA+ G
Sbjct: 15 FKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCR---- 800
R+ + G+D + +VG ++R LF+ A++ P I+F DEID + R
Sbjct: 74 -----RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 128
Query: 801 ---TRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFP 857
+++QT ++ LL MDG + ++VV+ ATNRP+ +DPAL RPGRFDR+I
Sbjct: 129 GGGNDEREQT----LNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 184
Query: 858 LPSMEDRAAILSLHTERWPKPVTGSL-LKWIAARTAGFAGAD 898
P ++ R IL +H KP+ + L +A RT GF GAD
Sbjct: 185 APDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGAD 224
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 133/259 (51%), Gaps = 21/259 (8%)
Query: 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744
F+ VAG+ + ++E V L PE F LG P+G LL G PG GKTL+ +A+
Sbjct: 5 FKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAV---- 59
Query: 745 ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ 804
+ ++ + A GA+ + G ++R LF+ A P I++ DEID + R+
Sbjct: 60 -ATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118
Query: 805 ----DQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPS 860
+ ++ LL MDG+ + V+V+ +TNR + +D AL RPGR DR ++ LP+
Sbjct: 119 SGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178
Query: 861 MEDRAAILSLHTERWPKPVTGSLL-KWIAARTAGFAGADLQALCTQAAIIA--------- 910
+++R I H + + + + +A T GF+GAD+ +C +AA+ A
Sbjct: 179 LQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVH 238
Query: 911 -LKRNFPLQEILSAAAEKA 928
L + ++ +L+ A+K+
Sbjct: 239 TLNFEYAVERVLAGTAKKS 257
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 22/164 (13%)
Query: 724 LLHGHPGTGKTLVVRALIGSCARGD-------KRIAYFARKGADCLGKYVGDAERQLRLL 776
+L G PG GKT +V L +GD KRI KY G+ E +L+ +
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 777 FQVAEKCQPSIIFF-DEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835
Q + Q +I F DE+ + + +++ LA RG + +IGAT
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-------RGELRLIGATT 170
Query: 836 ----RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW 875
R DPAL R RF + +Y P++E+ +IL E++
Sbjct: 171 LDEYREIEKDPALER--RF-QPVYVDEPTVEETISILRGLKEKY 211
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 22/164 (13%)
Query: 724 LLHGHPGTGKTLVVRALIGSCARGD-------KRIAYFARKGADCLGKYVGDAERQLRLL 776
+L G PG GKT +V L +GD KRI KY G+ E +L+ +
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 777 FQVAEKCQPSIIFF-DEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835
Q + Q +I F DE+ + + +++ LA RG + +IGAT
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-------RGELRLIGATT 307
Query: 836 ----RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW 875
R DPAL R RF + +Y P++E+ +IL E++
Sbjct: 308 LDEYREIEKDPALER--RF-QPVYVDEPTVEETISILRGLKEKY 348
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 31/163 (19%)
Query: 724 LLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL------------GKYVGDAER 771
LL G G GKT + L +GD ADC KY GD E+
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGD-----VPEVMADCTIYSLDIGSLLAGTKYRGDFEK 265
Query: 772 QLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVI 831
+ + L + E+ SI+F DEI + Q ++ L+ L S G + VI
Sbjct: 266 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAA------NLIKPLLSSGKIRVI 319
Query: 832 GATNRPEAV-----DPALRRPGRFDREIYFPLPSMEDRAAILS 869
G+T E D AL R RF + I PS+E+ I++
Sbjct: 320 GSTTYQEFSNIFEKDRALAR--RFQK-IDITEPSIEETVQIIN 359
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 37.0 bits (84), Expect = 0.058, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 26/187 (13%)
Query: 690 GLQDVIRCMKEVVILPLLYPEFFDNLGL---TPPRGVLLHGHPGTGKTLVVRALIGSCAR 746
GL+ V ++E L LL LGL TP + G+PGTGKT V + G
Sbjct: 28 GLKPVKDRIRETAAL-LLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL-- 84
Query: 747 GDKRIAYFARKGA-------DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799
R+ Y RKG D +G+Y+G + + +V ++ ++F DE L
Sbjct: 85 --HRLGY-VRKGHLVSVTRDDLVGQYIGHTAPKTK---EVLKRAMGGVLFIDEAYYLY-- 136
Query: 800 RTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV---DPALRRPGRFDREIYF 856
R + + LL +M+ + V++ G +R E +P R R I F
Sbjct: 137 RPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFR--SRIAHHIEF 194
Query: 857 PLPSMED 863
P S E+
Sbjct: 195 PDYSDEE 201
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 36.6 bits (83), Expect = 0.078, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 26/187 (13%)
Query: 690 GLQDVIRCMKEVVILPLLYPEFFDNLGL---TPPRGVLLHGHPGTGKTLVVRALIGSCAR 746
GL+ V ++E L LL LGL TP + G+PGTGKT V + G
Sbjct: 35 GLKPVKDRIRETAAL-LLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL-- 91
Query: 747 GDKRIAYFARKGA-------DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799
R+ Y RKG D +G+Y+G + + +V ++ ++F DE L
Sbjct: 92 --HRLGY-VRKGHLVSVTRDDLVGQYIGHTAPKTK---EVLKRAMGGVLFIDEAYYLY-- 143
Query: 800 RTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV---DPALRRPGRFDREIYF 856
R + + LL +M+ + V++ G +R E +P R R I F
Sbjct: 144 RPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFR--SRIAHHIEF 201
Query: 857 PLPSMED 863
P S E+
Sbjct: 202 PDYSDEE 208
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 36.6 bits (83), Expect = 0.090, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 23/158 (14%)
Query: 724 LLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK------GADCLG-KYVGDAERQLR-L 775
+L G PG GKT +V L G+ R+ GA G KY G+ E +L+ +
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 776 LFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835
L +A++ I+F DE+ + +++ LA RG + +GAT
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-------RGELHCVGATT 159
Query: 836 RPE-----AVDPALRRPGRFDREIYFPLPSMEDRAAIL 868
E D AL R RF + ++ PS+ED AIL
Sbjct: 160 LDEYRQYIEKDAALER--RFQK-VFVAEPSVEDTIAIL 194
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 723 VLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVG-DAERQLRLLFQVA- 780
+LL G G+GKTL+ + L D IA G YVG D E L L Q +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATSLTEAG-YVGEDVENILTRLLQASD 130
Query: 781 ---EKCQPSIIFFDEIDG---LAPCRTRQQDQTHSSVVSTLLALMDG 821
+K Q I+F DEID L+ R+ +D + V LL +++G
Sbjct: 131 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG 177
>pdb|1OJL|A Chain A, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|B Chain B, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|C Chain C, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|D Chain D, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|E Chain E, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|F Chain F, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
Length = 304
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 711 FFDNLGLTPPR--GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF--ARKGADCL---- 762
+ + + P VL+HG GTGK LV RAL AR D+ + A L
Sbjct: 14 LLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESEL 73
Query: 763 -----GKYVG-DAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ-----QDQTHSSV 811
G + G D R+ R + + +F DEI ++P + Q++ V
Sbjct: 74 FGHEKGAFTGADKRREGRFV-----EADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRV 128
Query: 812 VSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPL-------PSMEDR 864
S +D V +I AT+R A + + GRF +++Y+ L PS+ R
Sbjct: 129 GSNQTISVD-------VRLIAATHRDLAEEVS---AGRFRQDLYYRLNVVAIEMPSLRQR 178
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 857 PLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALK 912
P P+ E R IL +H+ R G L+ IA G +GA+++ +CT+A AL+
Sbjct: 1 PPPNEEARLDILKIHS-RKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALR 55
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 859 PSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIAL--KRNFP 916
P+ E R IL +H+ R G L+ IA G +GA+++ +CT+A + AL +R
Sbjct: 11 PNEEARLDILKIHS-RKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHV 69
Query: 917 LQEILSAAAEKAF 929
QE A K
Sbjct: 70 TQEDFEMAVAKVM 82
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 724 LLHGHPGTGKTLVVRALIGSCARGD-------KRIAYFARKGADCLGKYVGDAERQLR-L 775
+L G PG GKT +V L +GD +++ KY GD E +L+ +
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 776 LFQVAEKCQPSIIFFDEI 793
L +V + ++F DEI
Sbjct: 107 LKEVQDAEGQVVMFIDEI 124
>pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From
Neisseria Meningitidis Z2491 At 1.91 A Resolution
pdb|3JTX|B Chain B, Crystal Structure Of Aminotransferase (np_283882.1) From
Neisseria Meningitidis Z2491 At 1.91 A Resolution
Length = 396
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 42/195 (21%)
Query: 527 EVYFAG---LGCLKNIRAALCRGRA--LKCT----RCGRPGATIG--------CRVDRCP 569
E+YF G LGCL+ A L R R L T R PG G +
Sbjct: 212 EIYFDGNKPLGCLQA-AAQLGRSRQKLLXFTSLSXRSNVPGLRSGFVAGDAELLKNFLLY 270
Query: 570 RTYH-----LPCARANGCIFDHRKFLIACTDHRHLFQPYGDQYLARIKKLKARKMKMEIR 624
RTYH +P RA+ +D + +I D+R L+Q + R+ + + +++
Sbjct: 271 RTYHGSAXSIPVQRASIAAWDDEQHVI---DNRRLYQ----EKFERVIPILQQVFDVKLP 323
Query: 625 KLSNDAWRKDMEAEEKWLENCGEDEEFLKREGKRLHRDLLRIAPVYIGGSDSDSGKLFEG 684
S W K + G+D F + + +++ P D++ G EG
Sbjct: 324 DASFYIWLKVPD---------GDDLAFAR---NLWQKAAIQVLPGRFLARDTEQGNPGEG 371
Query: 685 FESVAGLQDVIRCMK 699
+ +A + DV C+K
Sbjct: 372 YVRIALVADVATCVK 386
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 26/187 (13%)
Query: 690 GLQDVIRCMKEVVILPLLYPEFFDNLGL---TPPRGVLLHGHPGTGKTLVVRALIGSCAR 746
GL+ V ++E L LL LGL TP G+PGTGKT V G
Sbjct: 35 GLKPVKDRIRETAAL-LLVERARQKLGLAHETPTLHXSFTGNPGTGKTTVALKXAGLL-- 91
Query: 747 GDKRIAYFARKGA-------DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799
R+ Y RKG D +G+Y+G + + +V ++ ++F DE L
Sbjct: 92 --HRLGY-VRKGHLVSVTRDDLVGQYIGHTAPKTK---EVLKRAXGGVLFIDEAYYLY-- 143
Query: 800 RTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV---DPALRRPGRFDREIYF 856
R + + LL + + + V++ G +R E +P R R I F
Sbjct: 144 RPDNERDYGQEAIEILLQVXENNRDDLVVILAGYADRXENFFQSNPGFR--SRIAHHIEF 201
Query: 857 PLPSMED 863
P S E+
Sbjct: 202 PDYSDEE 208
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 55 TGSAARNLE-------LRRSSRVRRAPVLLDVSPSPVKKRRK-MDKTVNLYVSKSLNSSR 106
+AA+N + LR R R+ PVL V P + K ++ VN +S+ ++
Sbjct: 201 VNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQE 260
Query: 107 RSAKEKDNEKSVSPGVWGSRLRSRGRNVGFGAKSDESGHLSRRRKLFREMDEDAESEVGM 166
SA+ K + + LR+ + A +D+ L RR + ++D +
Sbjct: 261 LSARVK---TQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDS------LV 311
Query: 167 EKGSEGGDLVVSKAEKLDRFKELN-----DLGDE 195
++ + GGD V + +D FK++N D+GDE
Sbjct: 312 KRATLGGDPVSALLIDIDFFKKINDTFGHDIGDE 345
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 55 TGSAARNLE-------LRRSSRVRRAPVLLDVSPSPVKKRRK-MDKTVNLYVSKSLNSSR 106
+AA+N + LR R R+ PVL V P + K ++ VN +S+ ++
Sbjct: 200 VNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQE 259
Query: 107 RSAKEKDNEKSVSPGVWGSRLRSRGRNVGFGAKSDESGHLSRRRKLFREMDEDAESEVGM 166
SA+ K + + LR+ + A +D+ L RR + ++D +
Sbjct: 260 LSARVK---TQIQRKRYTDYLRNNLDHSLELAVTDQLTGLHNRRYMTGQLDS------LV 310
Query: 167 EKGSEGGDLVVSKAEKLDRFKELN-----DLGDE 195
++ + GGD V + +D FK++N D+GDE
Sbjct: 311 KRATLGGDPVSALLIDIDFFKKINDTFGHDIGDE 344
>pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
Length = 440
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 18/145 (12%)
Query: 651 FLKREGKRLHRDLLRIAPVYIGGSDSDSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPE 710
F+K ++ + +L A + G+D+ +E FE + + + K V+L L P+
Sbjct: 43 FIKEWLEKKYYSVLSKAVKVVLGNDATFEITYEAFEPHSSYSEPL-VKKRAVLLTPLNPD 101
Query: 711 F-FDNLGLTPPRGVLLHG------HPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG 763
+ F+N + P H HPG L + G G + +G
Sbjct: 102 YTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFI---YGGVGLGKTHL-------LQSIG 151
Query: 764 KYVGDAERQLRLLFQVAEKCQPSII 788
YV E LR+++ +EK ++
Sbjct: 152 NYVVQNEPDLRVMYITSEKFLNDLV 176
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 59 ARNLELRRSSRVRRAPVLLDVSPSPVKKRRKMDKTVNLYVSKSLNSSRR-SAKEKDNEKS 117
A+NL + + V L + P P + ++ KT+ ++ N + R KE D ++
Sbjct: 181 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240
Query: 118 VSPGVWGSRLRSRGRNVG---FGAKSDESGHLSRRRKLFREMDEDAESEVGMEKGSEGGD 174
+S +W L SR +G FG + + KL + + + + +GSEG +
Sbjct: 241 LSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNVPVPPEGSEGNE 300
Query: 175 LVVSKAEK 182
+ K E+
Sbjct: 301 ELRQKFER 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,219,164
Number of Sequences: 62578
Number of extensions: 1399781
Number of successful extensions: 3279
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3120
Number of HSP's gapped (non-prelim): 72
length of query: 1167
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1057
effective length of database: 8,089,757
effective search space: 8550873149
effective search space used: 8550873149
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)