Query 001066
Match_columns 1167
No_of_seqs 738 out of 4539
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 14:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 2.6E-59 5.7E-64 538.8 29.9 372 682-1164 186-600 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 6.6E-48 1.4E-52 452.1 24.8 341 683-1164 182-523 (693)
3 KOG0733 Nuclear AAA ATPase (VC 100.0 2.4E-45 5.2E-50 423.6 25.8 346 603-962 380-778 (802)
4 KOG0730 AAA+-type ATPase [Post 100.0 3.8E-45 8.3E-50 428.9 25.5 310 604-959 371-680 (693)
5 KOG0732 AAA+-type ATPase conta 100.0 4.8E-45 1E-49 448.8 26.4 532 511-1165 117-650 (1080)
6 KOG0736 Peroxisome assembly fa 100.0 6.3E-44 1.4E-48 420.6 24.2 355 685-1164 400-760 (953)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.2E-42 2.5E-47 384.8 22.6 247 679-954 144-393 (406)
8 KOG0734 AAA+-type ATPase conta 100.0 4.4E-42 9.4E-47 391.3 23.9 354 682-1057 300-659 (752)
9 TIGR01243 CDC48 AAA family ATP 100.0 3.8E-41 8.3E-46 422.3 31.3 370 681-1164 173-542 (733)
10 KOG0736 Peroxisome assembly fa 100.0 2.4E-39 5.1E-44 382.1 24.7 344 605-962 584-941 (953)
11 KOG0731 AAA+-type ATPase conta 100.0 1.6E-37 3.4E-42 375.0 27.3 352 680-1057 305-668 (774)
12 KOG0735 AAA+-type ATPase [Post 100.0 2E-37 4.3E-42 362.5 27.2 344 687-1164 409-756 (952)
13 KOG0738 AAA+-type ATPase [Post 100.0 1E-37 2.2E-42 346.6 19.4 272 682-971 208-489 (491)
14 COG0465 HflB ATP-dependent Zn 100.0 1.4E-35 3E-40 353.6 22.9 350 680-1048 144-501 (596)
15 KOG0739 AAA+-type ATPase [Post 100.0 2.1E-36 4.7E-41 325.9 14.4 276 679-962 126-425 (439)
16 TIGR01243 CDC48 AAA family ATP 100.0 4.5E-35 9.7E-40 367.6 27.9 349 600-961 362-718 (733)
17 COG0464 SpoVK ATPases of the A 100.0 1.3E-34 2.9E-39 348.7 29.4 317 605-958 171-488 (494)
18 KOG0735 AAA+-type ATPase [Post 100.0 1.1E-34 2.4E-39 339.7 24.0 307 591-913 581-888 (952)
19 KOG0728 26S proteasome regulat 100.0 1.1E-33 2.3E-38 298.9 19.5 244 681-953 142-388 (404)
20 TIGR01241 FtsH_fam ATP-depende 100.0 2.8E-33 6.2E-38 337.2 24.5 350 680-1048 49-405 (495)
21 CHL00176 ftsH cell division pr 100.0 3.5E-33 7.6E-38 341.6 23.8 353 682-1057 179-540 (638)
22 KOG0652 26S proteasome regulat 100.0 1.3E-33 2.9E-38 299.4 16.6 232 679-916 164-398 (424)
23 KOG0727 26S proteasome regulat 100.0 4.2E-33 9E-38 294.7 18.8 248 677-953 146-396 (408)
24 KOG0726 26S proteasome regulat 100.0 2.3E-33 5.1E-38 301.6 13.5 246 679-953 178-426 (440)
25 PTZ00454 26S protease regulato 100.0 5.8E-32 1.3E-36 315.8 23.0 246 679-953 138-386 (398)
26 KOG0737 AAA+-type ATPase [Post 100.0 5.3E-32 1.2E-36 302.2 19.0 270 680-957 86-363 (386)
27 KOG0741 AAA+-type ATPase [Post 100.0 8.7E-32 1.9E-36 307.3 20.0 259 687-957 222-494 (744)
28 KOG0729 26S proteasome regulat 100.0 5.3E-32 1.2E-36 288.0 16.7 246 679-953 170-418 (435)
29 PRK10733 hflB ATP-dependent me 100.0 2.8E-31 6E-36 327.8 25.6 356 680-1057 146-510 (644)
30 PRK03992 proteasome-activating 100.0 6.4E-31 1.4E-35 307.6 23.1 250 679-957 124-376 (389)
31 COG1223 Predicted ATPase (AAA+ 100.0 4.2E-31 9.1E-36 281.2 17.6 239 682-955 117-357 (368)
32 COG0464 SpoVK ATPases of the A 100.0 2E-30 4.4E-35 312.6 25.4 330 704-1164 2-331 (494)
33 CHL00195 ycf46 Ycf46; Provisio 100.0 1.8E-29 3.9E-34 300.8 30.2 242 682-957 224-467 (489)
34 COG0542 clpA ATP-binding subun 100.0 3.8E-30 8.3E-35 313.6 24.7 218 683-933 167-396 (786)
35 PTZ00361 26 proteosome regulat 100.0 1.8E-30 4E-35 305.3 20.2 246 679-953 176-424 (438)
36 KOG0954 PHD finger protein [Ge 100.0 4.4E-32 9.6E-37 316.6 1.1 159 442-600 268-440 (893)
37 TIGR02639 ClpA ATP-dependent C 100.0 2E-28 4.3E-33 307.2 26.2 237 684-953 180-429 (731)
38 TIGR01242 26Sp45 26S proteasom 100.0 1.8E-28 3.8E-33 285.0 23.1 246 679-953 115-363 (364)
39 TIGR03689 pup_AAA proteasome A 100.0 4.4E-28 9.6E-33 288.7 25.9 224 679-908 175-408 (512)
40 KOG0740 AAA+-type ATPase [Post 100.0 4.1E-29 8.9E-34 288.1 16.1 263 682-962 149-413 (428)
41 PRK11034 clpA ATP-dependent Cl 100.0 9.5E-28 2.1E-32 298.5 23.3 236 684-952 184-432 (758)
42 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.8E-27 3.8E-32 303.7 21.0 292 709-1027 1619-1967(2281)
43 TIGR03345 VI_ClpV1 type VI sec 99.9 1.3E-26 2.9E-31 293.0 24.6 190 683-895 184-390 (852)
44 KOG0651 26S proteasome regulat 99.9 1.5E-27 3.2E-32 260.0 11.3 226 682-913 128-356 (388)
45 KOG0957 PHD finger protein [Ge 99.9 7.3E-27 1.6E-31 262.8 15.8 152 447-599 121-301 (707)
46 COG5141 PHD zinc finger-contai 99.9 1.2E-28 2.6E-33 276.9 0.7 140 445-585 193-341 (669)
47 CHL00095 clpC Clp protease ATP 99.9 4.8E-26 1E-30 288.8 24.2 190 684-896 177-382 (821)
48 KOG0955 PHD finger protein BR1 99.9 9.7E-28 2.1E-32 298.7 6.2 159 440-599 214-396 (1051)
49 KOG0956 PHD finger protein AF1 99.9 7.5E-28 1.6E-32 279.0 3.9 152 447-599 7-183 (900)
50 PLN00020 ribulose bisphosphate 99.9 1.5E-24 3.2E-29 245.0 19.4 171 714-893 142-330 (413)
51 TIGR03346 chaperone_ClpB ATP-d 99.9 1.1E-23 2.3E-28 268.2 25.8 203 684-909 171-395 (852)
52 PRK10865 protein disaggregatio 99.9 1.4E-23 3E-28 266.4 25.7 188 684-894 176-380 (857)
53 KOG0741 AAA+-type ATPase [Post 99.9 6.7E-23 1.4E-27 235.1 14.3 267 590-870 411-684 (744)
54 TIGR02881 spore_V_K stage V sp 99.8 8.3E-19 1.8E-23 195.3 18.4 219 684-913 4-241 (261)
55 CHL00181 cbbX CbbX; Provisiona 99.8 1.8E-18 3.9E-23 195.1 18.4 217 687-913 24-257 (287)
56 TIGR02880 cbbX_cfxQ probable R 99.8 2.7E-18 5.9E-23 193.5 17.1 220 684-913 19-256 (284)
57 PF00004 AAA: ATPase family as 99.7 6.8E-18 1.5E-22 166.1 11.2 130 723-858 1-132 (132)
58 KOG0743 AAA+-type ATPase [Post 99.7 3.4E-17 7.3E-22 188.6 16.0 204 683-902 198-412 (457)
59 PF05496 RuvB_N: Holliday junc 99.7 6.6E-17 1.4E-21 173.4 16.3 190 683-907 21-226 (233)
60 PF13832 zf-HC5HC2H_2: PHD-zin 99.7 2.5E-18 5.5E-23 167.1 4.4 98 498-596 4-110 (110)
61 KOG1051 Chaperone HSP104 and r 99.7 9.5E-17 2.1E-21 199.3 18.9 168 685-875 185-366 (898)
62 PF13771 zf-HC5HC2H: PHD-like 99.7 9.2E-18 2E-22 157.3 4.0 80 518-597 1-90 (90)
63 KOG0744 AAA+-type ATPase [Post 99.7 1.3E-16 2.8E-21 175.6 12.3 188 685-874 141-342 (423)
64 KOG0742 AAA+-type ATPase [Post 99.7 3.2E-16 7E-21 176.1 15.6 214 684-912 353-596 (630)
65 CHL00195 ycf46 Ycf46; Provisio 99.7 1.8E-15 3.9E-20 181.3 20.7 109 784-906 81-189 (489)
66 COG2255 RuvB Holliday junction 99.6 4.2E-15 9.1E-20 162.2 18.2 198 683-915 23-236 (332)
67 COG2256 MGS1 ATPase related to 99.6 2.4E-15 5.2E-20 170.8 15.5 177 683-902 21-213 (436)
68 TIGR00635 ruvB Holliday juncti 99.6 1.1E-14 2.3E-19 165.4 20.1 194 684-912 2-211 (305)
69 PRK00080 ruvB Holliday junctio 99.6 1.3E-14 2.8E-19 167.0 20.2 196 683-913 22-233 (328)
70 TIGR02902 spore_lonB ATP-depen 99.6 1.7E-14 3.6E-19 175.7 18.2 202 683-913 62-315 (531)
71 TIGR00763 lon ATP-dependent pr 99.6 1.3E-14 2.8E-19 184.0 17.5 196 687-905 321-549 (775)
72 PRK14956 DNA polymerase III su 99.6 6.1E-14 1.3E-18 166.2 18.2 190 683-907 15-227 (484)
73 PRK07003 DNA polymerase III su 99.5 1E-13 2.2E-18 169.5 18.5 192 683-909 13-227 (830)
74 TIGR00362 DnaA chromosomal rep 99.5 4.6E-13 1E-17 158.4 22.0 215 720-953 136-357 (405)
75 PRK00149 dnaA chromosomal repl 99.5 3.7E-13 8.1E-18 161.3 20.8 215 720-953 148-369 (450)
76 COG0466 Lon ATP-dependent Lon 99.5 1.4E-13 3E-18 165.3 16.9 294 686-1022 323-649 (782)
77 PRK12323 DNA polymerase III su 99.5 1.2E-13 2.5E-18 167.3 16.4 191 683-908 13-231 (700)
78 PTZ00112 origin recognition co 99.5 4.7E-13 1E-17 163.8 21.0 203 686-909 755-988 (1164)
79 PLN03025 replication factor C 99.5 3E-13 6.6E-18 155.1 18.1 188 683-902 10-201 (319)
80 KOG2004 Mitochondrial ATP-depe 99.5 4E-13 8.6E-18 160.3 19.1 170 686-873 411-597 (906)
81 PRK14962 DNA polymerase III su 99.5 2.8E-13 6E-18 162.4 17.5 186 683-902 11-219 (472)
82 PRK14949 DNA polymerase III su 99.5 4.2E-13 9E-18 167.0 18.6 190 683-907 13-225 (944)
83 PRK14961 DNA polymerase III su 99.5 5.9E-13 1.3E-17 155.3 19.0 192 683-909 13-227 (363)
84 PRK14960 DNA polymerase III su 99.5 5.5E-13 1.2E-17 161.9 19.0 192 683-909 12-226 (702)
85 PRK14086 dnaA chromosomal repl 99.5 3.3E-13 7.1E-18 163.8 15.9 215 721-953 315-536 (617)
86 KOG0989 Replication factor C, 99.5 4.2E-13 9.2E-18 148.1 15.1 188 683-902 33-231 (346)
87 PRK14088 dnaA chromosomal repl 99.5 1.3E-12 2.8E-17 155.9 20.3 218 720-953 130-354 (440)
88 PRK14958 DNA polymerase III su 99.5 7.2E-13 1.6E-17 160.3 18.3 192 683-909 13-227 (509)
89 PRK07994 DNA polymerase III su 99.5 8.4E-13 1.8E-17 162.1 19.0 190 683-907 13-225 (647)
90 PRK08691 DNA polymerase III su 99.5 1.3E-12 2.7E-17 160.1 19.6 192 683-909 13-227 (709)
91 KOG2028 ATPase related to the 99.5 7.9E-13 1.7E-17 147.6 15.9 192 683-914 135-349 (554)
92 PRK14964 DNA polymerase III su 99.5 7.8E-13 1.7E-17 158.2 16.9 193 683-910 10-225 (491)
93 PRK06645 DNA polymerase III su 99.5 1.1E-12 2.5E-17 157.9 18.4 193 683-910 18-237 (507)
94 PRK13342 recombination factor 99.5 1.5E-12 3.2E-17 154.6 19.0 182 683-908 9-202 (413)
95 COG1222 RPT1 ATP-dependent 26S 99.5 5.7E-14 1.2E-18 157.6 6.4 67 1091-1163 173-239 (406)
96 TIGR02928 orc1/cdc6 family rep 99.5 2.8E-12 6.1E-17 149.0 20.7 209 686-914 15-258 (365)
97 PRK07764 DNA polymerase III su 99.5 1.2E-12 2.7E-17 165.2 18.8 196 683-909 12-228 (824)
98 PRK06893 DNA replication initi 99.4 2E-12 4.3E-17 141.7 17.9 164 721-906 40-207 (229)
99 PRK12402 replication factor C 99.4 2.7E-12 5.8E-17 147.3 19.9 182 683-893 12-218 (337)
100 PRK10787 DNA-binding ATP-depen 99.4 3.1E-12 6.6E-17 161.6 21.6 228 685-952 320-581 (784)
101 PRK00411 cdc6 cell division co 99.4 4.5E-12 9.8E-17 148.9 21.4 210 686-914 30-266 (394)
102 PRK04195 replication factor C 99.4 1.9E-12 4.2E-17 156.4 18.6 185 683-901 11-202 (482)
103 PRK08084 DNA replication initi 99.4 3.2E-12 7E-17 140.6 18.7 167 720-910 45-217 (235)
104 PRK07940 DNA polymerase III su 99.4 1.5E-12 3.3E-17 152.8 16.9 190 684-902 3-214 (394)
105 PRK12422 chromosomal replicati 99.4 5.4E-13 1.2E-17 159.1 13.2 171 720-905 141-316 (445)
106 PRK14952 DNA polymerase III su 99.4 2.6E-12 5.7E-17 157.0 19.5 192 683-909 10-226 (584)
107 PRK05563 DNA polymerase III su 99.4 2.7E-12 5.9E-17 157.2 19.3 192 683-909 13-227 (559)
108 PRK14087 dnaA chromosomal repl 99.4 3.5E-12 7.6E-17 152.5 19.4 240 720-979 141-400 (450)
109 PF00308 Bac_DnaA: Bacterial d 99.4 2.1E-12 4.6E-17 140.6 15.6 178 720-910 34-216 (219)
110 PRK14951 DNA polymerase III su 99.4 3.3E-12 7.1E-17 156.7 18.6 192 683-909 13-232 (618)
111 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.9E-12 6.2E-17 138.9 16.1 194 684-914 13-213 (226)
112 PRK14959 DNA polymerase III su 99.4 3.6E-12 7.9E-17 155.5 17.3 189 683-902 13-221 (624)
113 TIGR02397 dnaX_nterm DNA polym 99.4 4.6E-12 9.9E-17 146.6 17.2 192 683-909 11-225 (355)
114 PRK14969 DNA polymerase III su 99.4 5E-12 1.1E-16 153.9 18.3 192 683-909 13-227 (527)
115 COG0593 DnaA ATPase involved i 99.4 2.5E-12 5.4E-17 149.8 14.9 215 719-953 112-332 (408)
116 PRK14963 DNA polymerase III su 99.4 6.7E-12 1.5E-16 151.7 19.1 189 683-906 11-221 (504)
117 PRK14957 DNA polymerase III su 99.4 8.2E-12 1.8E-16 151.4 19.8 192 683-909 13-227 (546)
118 PRK07133 DNA polymerase III su 99.4 8.3E-12 1.8E-16 154.3 19.5 192 683-909 15-226 (725)
119 PRK14970 DNA polymerase III su 99.4 9E-12 2E-16 145.5 18.5 193 683-910 14-217 (367)
120 PHA02544 44 clamp loader, smal 99.4 6.8E-12 1.5E-16 143.2 17.0 178 683-895 18-203 (316)
121 PRK08451 DNA polymerase III su 99.4 1.2E-11 2.7E-16 149.3 19.9 193 683-910 11-226 (535)
122 PRK05896 DNA polymerase III su 99.4 9.8E-12 2.1E-16 151.1 18.2 191 683-908 13-226 (605)
123 PRK13341 recombination factor 99.4 6.3E-12 1.4E-16 157.2 17.1 182 683-908 25-223 (725)
124 PRK08903 DnaA regulatory inact 99.4 1.4E-11 2.9E-16 134.4 17.7 188 683-912 15-209 (227)
125 PRK14965 DNA polymerase III su 99.4 7.5E-12 1.6E-16 153.9 17.4 192 683-909 13-227 (576)
126 TIGR00390 hslU ATP-dependent p 99.4 6.2E-12 1.4E-16 146.3 15.6 175 688-869 14-343 (441)
127 PRK05342 clpX ATP-dependent pr 99.4 1.2E-11 2.6E-16 146.0 18.0 216 688-910 73-378 (412)
128 PRK06647 DNA polymerase III su 99.4 9E-12 1.9E-16 152.3 17.5 192 683-909 13-227 (563)
129 PRK05201 hslU ATP-dependent pr 99.4 5.7E-12 1.2E-16 146.7 14.4 175 688-869 17-345 (443)
130 PRK09111 DNA polymerase III su 99.4 1.7E-11 3.7E-16 150.6 19.1 192 683-909 21-240 (598)
131 PRK00440 rfc replication facto 99.4 3.8E-11 8.2E-16 136.6 20.7 182 683-899 14-201 (319)
132 PRK14953 DNA polymerase III su 99.3 1.8E-11 3.8E-16 147.6 18.5 192 683-909 13-227 (486)
133 PRK08727 hypothetical protein; 99.3 6.4E-11 1.4E-15 130.2 20.2 155 721-898 42-201 (233)
134 PRK06305 DNA polymerase III su 99.3 1.9E-11 4.1E-16 146.3 17.2 193 683-906 14-226 (451)
135 PRK14955 DNA polymerase III su 99.3 3.7E-11 8E-16 142.0 16.7 193 683-910 13-236 (397)
136 PRK05642 DNA replication initi 99.3 7.2E-11 1.6E-15 129.9 17.5 169 720-912 45-218 (234)
137 TIGR00382 clpX endopeptidase C 99.3 5E-11 1.1E-15 140.3 17.1 216 688-910 79-384 (413)
138 COG1474 CDC6 Cdc6-related prot 99.3 1.1E-10 2.3E-15 136.2 19.4 208 688-916 19-251 (366)
139 COG2812 DnaX DNA polymerase II 99.3 2E-11 4.3E-16 146.0 13.6 199 683-910 13-228 (515)
140 PRK14948 DNA polymerase III su 99.3 5.6E-11 1.2E-15 146.9 17.9 187 683-904 13-224 (620)
141 PRK14950 DNA polymerase III su 99.3 7.6E-11 1.6E-15 145.6 18.9 189 683-906 13-225 (585)
142 KOG0738 AAA+-type ATPase [Post 99.3 3E-12 6.4E-17 144.6 5.7 56 1109-1166 247-302 (491)
143 COG5271 MDN1 AAA ATPase contai 99.3 6.5E-11 1.4E-15 147.9 16.6 329 718-1139 147-496 (4600)
144 TIGR02903 spore_lon_C ATP-depe 99.3 4.4E-10 9.5E-15 139.4 24.3 228 683-954 151-431 (615)
145 TIGR02640 gas_vesic_GvpN gas v 99.3 1.6E-10 3.6E-15 129.1 18.7 133 720-872 21-198 (262)
146 PLN00020 ribulose bisphosphate 99.3 4.6E-12 1E-16 144.5 6.0 54 1109-1164 150-203 (413)
147 PRK14971 DNA polymerase III su 99.3 1.4E-10 3.1E-15 143.3 19.4 193 683-910 14-230 (614)
148 PRK14954 DNA polymerase III su 99.2 1.5E-10 3.2E-15 142.6 18.4 193 683-910 13-236 (620)
149 PRK06620 hypothetical protein; 99.2 8.5E-11 1.8E-15 127.7 13.2 145 721-906 45-193 (214)
150 PRK13407 bchI magnesium chelat 99.2 2.1E-10 4.5E-15 132.1 16.4 164 683-872 5-216 (334)
151 PRK11034 clpA ATP-dependent Cl 99.2 9.5E-11 2.1E-15 147.4 14.5 200 687-908 459-713 (758)
152 PF05673 DUF815: Protein of un 99.2 7.1E-10 1.5E-14 121.1 18.0 169 682-882 23-217 (249)
153 TIGR02639 ClpA ATP-dependent C 99.2 1.6E-10 3.5E-15 146.2 14.5 197 686-910 454-711 (731)
154 KOG0727 26S proteasome regulat 99.2 1.9E-11 4E-16 131.2 4.0 66 1091-1162 177-242 (408)
155 cd00009 AAA The AAA+ (ATPases 99.1 3.4E-10 7.5E-15 111.4 12.5 140 690-857 2-150 (151)
156 CHL00081 chlI Mg-protoporyphyr 99.1 4.7E-10 1E-14 129.6 15.1 164 681-872 12-232 (350)
157 COG1224 TIP49 DNA helicase TIP 99.1 1.7E-09 3.8E-14 121.6 18.2 113 785-914 292-416 (450)
158 PRK09087 hypothetical protein; 99.1 6.7E-10 1.5E-14 121.7 14.4 154 721-910 45-203 (226)
159 TIGR01650 PD_CobS cobaltochela 99.1 4.2E-10 9E-15 128.3 13.0 142 719-874 63-235 (327)
160 KOG0728 26S proteasome regulat 99.1 7.7E-11 1.7E-15 126.4 6.6 62 1096-1163 174-235 (404)
161 KOG0739 AAA+-type ATPase [Post 99.1 7.2E-11 1.6E-15 129.4 6.3 54 1109-1164 168-221 (439)
162 TIGR02030 BchI-ChlI magnesium 99.1 1.7E-09 3.7E-14 124.9 16.8 163 684-872 2-219 (337)
163 PRK09112 DNA polymerase III su 99.1 2.5E-09 5.3E-14 124.4 18.2 188 682-899 19-238 (351)
164 KOG0726 26S proteasome regulat 99.1 2.6E-11 5.6E-16 132.4 1.6 67 1091-1163 207-273 (440)
165 TIGR00678 holB DNA polymerase 99.1 1.2E-09 2.7E-14 115.8 13.9 147 719-894 13-184 (188)
166 PRK07471 DNA polymerase III su 99.1 2.8E-09 6.2E-14 124.4 17.5 186 682-899 15-236 (365)
167 PRK05564 DNA polymerase III su 99.1 2.3E-09 5E-14 122.9 16.5 179 684-898 2-187 (313)
168 KOG0991 Replication factor C, 99.1 1.1E-09 2.4E-14 116.9 12.7 189 684-904 25-217 (333)
169 KOG0737 AAA+-type ATPase [Post 99.1 8E-11 1.7E-15 133.3 3.9 52 1109-1162 129-180 (386)
170 TIGR03345 VI_ClpV1 type VI sec 99.1 2E-09 4.3E-14 137.8 16.9 201 686-910 566-830 (852)
171 COG3829 RocR Transcriptional r 99.0 2.8E-10 6.1E-15 134.5 8.1 199 682-910 241-479 (560)
172 KOG0729 26S proteasome regulat 99.0 1.9E-10 4.2E-15 124.2 6.0 68 1091-1164 199-266 (435)
173 TIGR03346 chaperone_ClpB ATP-d 99.0 3.3E-09 7.1E-14 136.5 17.9 201 686-911 565-826 (852)
174 KOG0652 26S proteasome regulat 99.0 1.7E-10 3.7E-15 124.3 4.1 66 1091-1162 193-258 (424)
175 PRK10865 protein disaggregatio 99.0 5.4E-09 1.2E-13 134.2 17.8 199 685-908 567-826 (857)
176 CHL00095 clpC Clp protease ATP 99.0 4E-09 8.6E-14 135.3 16.3 198 686-908 509-779 (821)
177 KOG1969 DNA replication checkp 99.0 1.5E-08 3.3E-13 122.3 19.8 205 683-911 268-516 (877)
178 TIGR01817 nifA Nif-specific re 99.0 2.6E-09 5.6E-14 131.1 13.9 198 683-910 193-428 (534)
179 COG0542 clpA ATP-binding subun 99.0 3.3E-09 7.2E-14 131.5 14.0 196 686-906 491-750 (786)
180 COG1221 PspF Transcriptional r 99.0 1.6E-09 3.4E-14 126.3 9.8 205 683-916 75-315 (403)
181 PRK07399 DNA polymerase III su 99.0 5.8E-09 1.3E-13 119.6 14.0 185 684-900 2-220 (314)
182 TIGR02442 Cob-chelat-sub cobal 99.0 5.1E-09 1.1E-13 130.6 14.6 162 684-871 2-213 (633)
183 TIGR02974 phageshock_pspF psp 98.9 3.5E-09 7.5E-14 122.3 11.8 193 688-910 1-233 (329)
184 COG1223 Predicted ATPase (AAA+ 98.9 5.8E-10 1.3E-14 120.7 4.8 54 1110-1165 154-207 (368)
185 TIGR03015 pepcterm_ATPase puta 98.9 3.4E-08 7.4E-13 110.0 19.0 196 721-953 44-266 (269)
186 PRK04132 replication factor C 98.9 9.3E-09 2E-13 129.9 16.0 160 721-902 565-732 (846)
187 PRK11331 5-methylcytosine-spec 98.9 5.8E-09 1.3E-13 123.1 13.1 146 685-858 174-357 (459)
188 PRK13531 regulatory ATPase Rav 98.9 8.1E-09 1.8E-13 122.8 14.3 153 688-871 22-193 (498)
189 PRK11608 pspF phage shock prot 98.9 3.8E-09 8.3E-14 121.8 10.9 197 684-910 4-240 (326)
190 COG0714 MoxR-like ATPases [Gen 98.9 1.8E-09 4E-14 124.5 8.2 155 688-870 26-201 (329)
191 COG2204 AtoC Response regulato 98.9 2.9E-09 6.2E-14 126.2 9.9 200 684-913 139-377 (464)
192 PF06068 TIP49: TIP49 C-termin 98.9 6.1E-09 1.3E-13 119.2 11.8 94 785-895 279-384 (398)
193 TIGR03689 pup_AAA proteasome A 98.9 1.1E-09 2.4E-14 132.0 6.0 69 1092-1164 205-281 (512)
194 PRK15424 propionate catabolism 98.9 5.2E-09 1.1E-13 127.4 11.8 199 683-909 216-464 (538)
195 TIGR02329 propionate_PrpR prop 98.9 5.1E-09 1.1E-13 127.5 11.6 200 683-910 209-450 (526)
196 PHA02244 ATPase-like protein 98.9 9.1E-09 2E-13 118.8 12.9 121 720-861 119-263 (383)
197 smart00382 AAA ATPases associa 98.9 1E-08 2.2E-13 99.7 11.5 125 720-859 2-147 (148)
198 COG2607 Predicted ATPase (AAA+ 98.9 9.6E-08 2.1E-12 103.2 19.5 176 679-884 53-251 (287)
199 COG3604 FhlA Transcriptional r 98.9 5.3E-09 1.2E-13 122.4 10.3 198 683-910 220-456 (550)
200 COG0470 HolB ATPase involved i 98.9 8.7E-09 1.9E-13 117.4 11.9 154 687-869 2-178 (325)
201 PRK05022 anaerobic nitric oxid 98.9 8.3E-09 1.8E-13 125.9 12.0 197 685-911 186-421 (509)
202 PRK03992 proteasome-activating 98.9 2.4E-09 5.1E-14 126.4 6.7 65 1094-1164 156-220 (389)
203 PRK15429 formate hydrogenlyase 98.9 4.1E-08 8.9E-13 124.0 18.2 197 684-910 374-609 (686)
204 PRK10820 DNA-binding transcrip 98.9 7.7E-09 1.7E-13 126.4 11.3 198 683-910 201-437 (520)
205 KOG0651 26S proteasome regulat 98.9 2.5E-09 5.5E-14 118.5 6.1 64 1095-1164 158-221 (388)
206 PF00004 AAA: ATPase family as 98.8 4.1E-09 8.9E-14 103.7 6.6 53 1110-1164 1-53 (132)
207 PRK08058 DNA polymerase III su 98.8 1.6E-08 3.5E-13 116.8 12.1 152 684-870 3-180 (329)
208 TIGR00764 lon_rel lon-related 98.8 8.3E-08 1.8E-12 119.1 18.6 53 680-747 12-64 (608)
209 PRK05707 DNA polymerase III su 98.8 4.2E-08 9.1E-13 113.2 15.0 159 718-899 20-201 (328)
210 PRK11388 DNA-binding transcrip 98.8 1.7E-08 3.8E-13 126.3 12.8 197 683-909 322-553 (638)
211 PTZ00454 26S protease regulato 98.8 4.4E-09 9.5E-14 124.2 6.7 65 1094-1164 170-234 (398)
212 KOG0740 AAA+-type ATPase [Post 98.8 3E-09 6.5E-14 124.4 4.9 52 1109-1162 188-239 (428)
213 PF01078 Mg_chelatase: Magnesi 98.8 3.1E-09 6.6E-14 114.0 4.2 127 684-836 1-158 (206)
214 TIGR00602 rad24 checkpoint pro 98.8 5.3E-08 1.2E-12 120.3 15.3 199 683-902 81-324 (637)
215 COG1219 ClpX ATP-dependent pro 98.8 5.6E-08 1.2E-12 108.3 13.6 129 688-821 63-202 (408)
216 KOG1514 Origin recognition com 98.8 1.3E-07 2.8E-12 114.5 17.7 229 688-954 398-656 (767)
217 PF07728 AAA_5: AAA domain (dy 98.8 2.9E-09 6.3E-14 107.1 3.2 110 722-850 1-139 (139)
218 COG1239 ChlI Mg-chelatase subu 98.8 2.1E-07 4.5E-12 108.1 17.4 178 684-889 15-247 (423)
219 PTZ00361 26 proteosome regulat 98.8 8.4E-09 1.8E-13 122.7 6.3 64 1094-1163 208-271 (438)
220 KOG0745 Putative ATP-dependent 98.7 1.1E-07 2.4E-12 109.4 14.9 97 720-821 226-331 (564)
221 COG1220 HslU ATP-dependent pro 98.7 8.4E-08 1.8E-12 107.6 13.3 85 783-869 249-346 (444)
222 PF07724 AAA_2: AAA domain (Cd 98.7 2.8E-08 6.1E-13 104.5 9.0 116 719-838 2-131 (171)
223 smart00350 MCM minichromosome 98.7 9.8E-08 2.1E-12 116.5 15.0 165 688-873 205-401 (509)
224 TIGR02031 BchD-ChlD magnesium 98.7 1.8E-07 3.8E-12 115.9 16.6 137 720-872 16-174 (589)
225 PRK06871 DNA polymerase III su 98.7 3.1E-07 6.7E-12 105.7 16.6 155 718-897 22-199 (325)
226 KOG0731 AAA+-type ATPase conta 98.7 2.2E-08 4.8E-13 123.5 7.4 68 1091-1164 332-399 (774)
227 PF01637 Arch_ATPase: Archaeal 98.7 7.2E-08 1.6E-12 103.7 10.6 187 689-899 2-231 (234)
228 COG5271 MDN1 AAA ATPase contai 98.7 2.7E-07 5.9E-12 116.9 16.3 131 719-873 887-1048(4600)
229 TIGR02915 PEP_resp_reg putativ 98.7 4.5E-08 9.7E-13 117.2 9.5 192 686-910 139-372 (445)
230 PRK07993 DNA polymerase III su 98.7 3E-07 6.5E-12 106.5 15.9 160 718-899 22-202 (334)
231 PF13177 DNA_pol3_delta2: DNA 98.7 5.1E-08 1.1E-12 101.6 8.1 139 690-859 1-161 (162)
232 TIGR01241 FtsH_fam ATP-depende 98.6 2.4E-08 5.2E-13 121.5 6.1 54 1109-1164 90-143 (495)
233 PF00158 Sigma54_activat: Sigm 98.6 1.7E-07 3.6E-12 98.4 11.3 123 688-837 1-144 (168)
234 PF07726 AAA_3: ATPase family 98.6 5.3E-09 1.1E-13 104.0 -0.2 109 722-850 1-129 (131)
235 PRK08769 DNA polymerase III su 98.6 5.6E-07 1.2E-11 103.4 16.0 175 691-899 9-206 (319)
236 KOG2035 Replication factor C, 98.6 9.1E-07 2E-11 97.3 15.6 187 684-899 11-226 (351)
237 TIGR00368 Mg chelatase-related 98.6 1.5E-07 3.3E-12 114.0 10.7 177 683-913 189-422 (499)
238 PF05621 TniB: Bacterial TniB 98.6 1.4E-06 3E-11 98.4 17.5 202 692-915 43-274 (302)
239 TIGR02881 spore_V_K stage V sp 98.6 7.2E-08 1.6E-12 107.8 7.0 57 1107-1163 42-103 (261)
240 KOG2227 Pre-initiation complex 98.6 5.9E-07 1.3E-11 104.8 14.4 205 687-911 151-380 (529)
241 smart00763 AAA_PrkA PrkA AAA d 98.6 1.8E-06 3.9E-11 100.0 18.3 57 683-746 47-104 (361)
242 TIGR02880 cbbX_cfxQ probable R 98.6 7.3E-08 1.6E-12 109.2 6.8 55 1109-1164 60-120 (284)
243 TIGR01242 26Sp45 26S proteasom 98.6 6.4E-08 1.4E-12 113.3 6.2 64 1095-1164 148-211 (364)
244 CHL00206 ycf2 Ycf2; Provisiona 98.6 6.5E-08 1.4E-12 127.1 6.4 50 1094-1149 1621-1670(2281)
245 PRK10923 glnG nitrogen regulat 98.5 2.6E-07 5.7E-12 111.5 11.0 196 685-910 137-371 (469)
246 PRK06964 DNA polymerase III su 98.5 2.8E-07 6.1E-12 106.7 10.7 138 718-871 19-203 (342)
247 KOG1942 DNA helicase, TBP-inte 98.5 1.4E-06 3E-11 96.1 15.1 110 784-910 296-418 (456)
248 PLN03210 Resistant to P. syrin 98.5 2.2E-06 4.7E-11 114.3 19.3 242 605-893 118-387 (1153)
249 PRK08116 hypothetical protein; 98.5 3E-07 6.6E-12 103.4 9.1 132 720-869 114-257 (268)
250 PRK06090 DNA polymerase III su 98.5 1.1E-06 2.4E-11 101.0 13.4 149 691-870 8-178 (319)
251 CHL00181 cbbX CbbX; Provisiona 98.5 1.8E-07 4E-12 106.1 6.7 58 1107-1164 59-121 (287)
252 KOG0990 Replication factor C, 98.5 3.3E-07 7.2E-12 102.6 8.3 186 683-900 38-231 (360)
253 PRK09862 putative ATP-dependen 98.5 1.6E-06 3.5E-11 104.9 15.0 149 683-862 188-391 (506)
254 KOG0734 AAA+-type ATPase conta 98.4 1.5E-07 3.3E-12 110.3 5.1 65 1094-1164 328-392 (752)
255 PRK11361 acetoacetate metaboli 98.4 1.6E-06 3.5E-11 104.2 13.5 194 687-910 144-376 (457)
256 PTZ00111 DNA replication licen 98.4 2.4E-06 5.1E-11 108.1 15.3 166 688-870 452-655 (915)
257 PRK08699 DNA polymerase III su 98.4 8.9E-07 1.9E-11 102.2 10.7 137 718-870 19-183 (325)
258 TIGR01818 ntrC nitrogen regula 98.4 5.3E-07 1.1E-11 108.6 8.1 199 687-912 135-369 (463)
259 PRK15115 response regulator Gl 98.4 2.5E-06 5.5E-11 102.2 13.0 168 720-909 157-366 (444)
260 CHL00176 ftsH cell division pr 98.3 4.4E-07 9.5E-12 112.9 6.2 54 1109-1164 218-271 (638)
261 KOG2680 DNA helicase TIP49, TB 98.3 9.6E-06 2.1E-10 90.0 15.5 114 784-914 288-413 (454)
262 PRK05201 hslU ATP-dependent pr 98.3 4.2E-07 9.1E-12 106.7 5.3 54 1109-1164 52-107 (443)
263 PRK12377 putative replication 98.3 3.4E-06 7.3E-11 93.9 12.2 104 720-837 101-206 (248)
264 TIGR00390 hslU ATP-dependent p 98.3 4.6E-07 1E-11 106.3 5.5 54 1109-1164 49-104 (441)
265 PF14532 Sigma54_activ_2: Sigm 98.3 8.3E-07 1.8E-11 89.7 5.8 91 718-836 19-109 (138)
266 KOG1084 Transcription factor T 98.3 3.3E-07 7.3E-12 107.0 3.0 86 512-597 236-321 (375)
267 KOG1080 Histone H3 (Lys4) meth 98.3 4.7E-07 1E-11 115.4 4.4 138 443-587 571-717 (1005)
268 PRK08181 transposase; Validate 98.3 2.4E-06 5.1E-11 96.2 9.1 103 720-837 106-209 (269)
269 PF13173 AAA_14: AAA domain 98.3 2.5E-06 5.4E-11 85.1 8.2 120 721-863 3-126 (128)
270 KOG0732 AAA+-type ATPase conta 98.2 1.4E-06 3.1E-11 110.5 7.5 195 600-798 455-667 (1080)
271 COG1484 DnaC DNA replication p 98.2 5.3E-06 1.1E-10 92.8 11.1 104 719-837 104-209 (254)
272 PRK06835 DNA replication prote 98.2 4.1E-06 8.9E-11 96.8 9.7 103 720-836 183-288 (329)
273 KOG0744 AAA+-type ATPase [Post 98.2 1.6E-06 3.4E-11 97.2 5.7 59 1106-1165 177-242 (423)
274 PRK10365 transcriptional regul 98.2 2.7E-06 5.9E-11 101.6 8.3 169 719-909 161-371 (441)
275 PRK07952 DNA replication prote 98.2 1.1E-05 2.4E-10 89.6 12.2 103 721-837 100-205 (244)
276 PRK06921 hypothetical protein; 98.2 7.7E-06 1.7E-10 92.1 10.7 107 719-836 116-224 (266)
277 PRK13765 ATP-dependent proteas 98.2 1.9E-05 4.2E-10 98.3 15.1 52 680-746 25-76 (637)
278 PRK06526 transposase; Provisio 98.2 3.7E-06 8E-11 94.0 7.6 104 719-837 97-201 (254)
279 PF05729 NACHT: NACHT domain 98.2 9.9E-06 2.2E-10 82.6 10.2 145 722-874 2-165 (166)
280 PF00931 NB-ARC: NB-ARC domain 98.1 4.7E-05 1E-09 85.6 16.3 180 692-903 2-203 (287)
281 PF03215 Rad17: Rad17 cell cyc 98.1 2.8E-05 6.1E-10 94.9 15.2 207 683-911 16-269 (519)
282 COG3283 TyrR Transcriptional r 98.1 7.3E-06 1.6E-10 92.8 8.9 201 683-911 201-433 (511)
283 COG0465 HflB ATP-dependent Zn 98.1 2E-06 4.3E-11 104.9 4.6 66 1093-1164 173-238 (596)
284 PRK05917 DNA polymerase III su 98.1 2.7E-05 5.8E-10 88.3 13.0 121 718-859 17-154 (290)
285 PRK09183 transposase/IS protei 98.1 1E-05 2.2E-10 90.8 9.4 106 718-837 100-206 (259)
286 PF01695 IstB_IS21: IstB-like 98.1 3E-06 6.6E-11 89.8 5.0 104 719-837 46-150 (178)
287 KOG1051 Chaperone HSP104 and r 98.1 1.5E-05 3.3E-10 100.8 11.9 130 687-837 563-711 (898)
288 PRK13406 bchD magnesium chelat 98.1 2.1E-05 4.6E-10 97.1 12.7 192 721-928 26-251 (584)
289 COG0606 Predicted ATPase with 98.1 3.9E-06 8.4E-11 99.0 5.7 48 682-744 175-222 (490)
290 PF07724 AAA_2: AAA domain (Cd 98.0 4.8E-06 1E-10 87.7 5.1 37 1109-1147 5-45 (171)
291 PRK10733 hflB ATP-dependent me 98.0 7.2E-06 1.6E-10 102.9 6.7 54 1109-1164 187-240 (644)
292 PRK08939 primosomal protein Dn 98.0 2E-05 4.3E-10 90.4 9.6 75 719-797 155-230 (306)
293 PF05496 RuvB_N: Holliday junc 98.0 6E-06 1.3E-10 89.8 4.3 35 1109-1145 52-86 (233)
294 PRK05342 clpX ATP-dependent pr 98.0 7.6E-06 1.6E-10 97.3 5.6 53 1109-1163 110-164 (412)
295 PF13401 AAA_22: AAA domain; P 98.0 1.9E-05 4.2E-10 78.0 7.4 103 720-834 4-125 (131)
296 COG3284 AcoR Transcriptional a 98.0 9.9E-06 2.2E-10 98.2 6.4 171 720-910 336-540 (606)
297 PRK07132 DNA polymerase III su 97.9 0.00018 3.8E-09 82.4 15.2 147 720-893 18-177 (299)
298 KOG2228 Origin recognition com 97.9 4.7E-05 1E-09 86.2 9.8 166 687-873 25-220 (408)
299 TIGR02237 recomb_radB DNA repa 97.9 5.1E-05 1.1E-09 81.7 9.4 120 716-835 8-148 (209)
300 TIGR00763 lon ATP-dependent pr 97.9 1.3E-05 2.8E-10 102.8 5.5 56 1107-1164 347-411 (775)
301 KOG2170 ATPase of the AAA+ sup 97.8 0.00022 4.8E-09 79.9 13.7 132 688-836 84-224 (344)
302 PF12775 AAA_7: P-loop contain 97.8 4.3E-06 9.3E-11 94.4 -0.3 140 719-874 32-195 (272)
303 KOG1970 Checkpoint RAD17-RFC c 97.8 0.0006 1.3E-08 81.6 17.4 209 683-909 79-319 (634)
304 cd01120 RecA-like_NTPases RecA 97.8 7.8E-05 1.7E-09 75.4 8.6 76 723-798 2-99 (165)
305 TIGR00382 clpX endopeptidase C 97.8 2.8E-05 6.1E-10 92.3 5.9 54 1109-1164 118-173 (413)
306 PF06068 TIP49: TIP49 C-termin 97.8 5.8E-05 1.2E-09 87.2 8.0 54 1110-1164 53-106 (398)
307 PRK05818 DNA polymerase III su 97.7 0.0003 6.5E-09 78.5 12.7 121 718-859 5-147 (261)
308 COG1219 ClpX ATP-dependent pro 97.7 3.5E-05 7.6E-10 86.5 5.3 58 1107-1166 97-156 (408)
309 PRK07276 DNA polymerase III su 97.7 0.00028 6E-09 80.4 11.8 148 691-869 7-172 (290)
310 PF00910 RNA_helicase: RNA hel 97.7 0.00017 3.6E-09 70.0 8.5 25 723-747 1-25 (107)
311 TIGR02640 gas_vesic_GvpN gas v 97.6 5.8E-05 1.3E-09 84.8 5.1 46 1106-1154 21-72 (262)
312 PF03969 AFG1_ATPase: AFG1-lik 97.6 0.00011 2.3E-09 86.3 7.4 107 717-837 59-168 (362)
313 PRK12377 putative replication 97.6 6.6E-05 1.4E-09 83.7 5.4 55 1109-1164 103-164 (248)
314 PRK08116 hypothetical protein; 97.6 7.1E-05 1.5E-09 84.4 5.6 56 1109-1165 116-180 (268)
315 PF14516 AAA_35: AAA-like doma 97.6 0.012 2.6E-07 68.5 24.2 181 720-921 31-254 (331)
316 PF12774 AAA_6: Hydrolytic ATP 97.6 0.0004 8.6E-09 76.8 10.7 123 720-868 32-176 (231)
317 COG3267 ExeA Type II secretory 97.6 0.0026 5.5E-08 70.4 16.6 178 722-915 53-258 (269)
318 KOG0742 AAA+-type ATPase [Post 97.5 6.8E-05 1.5E-09 86.3 4.4 33 1109-1143 386-418 (630)
319 PRK07952 DNA replication prote 97.5 0.0001 2.2E-09 82.0 5.5 56 1109-1165 101-164 (244)
320 COG1241 MCM2 Predicted ATPase 97.5 0.00038 8.3E-09 86.7 10.4 160 688-868 288-479 (682)
321 TIGR02012 tigrfam_recA protein 97.5 0.0004 8.8E-09 80.1 9.8 119 716-834 51-189 (321)
322 PF01695 IstB_IS21: IstB-like 97.5 0.00014 2.9E-09 77.3 5.4 40 1109-1149 49-90 (178)
323 PRK06851 hypothetical protein; 97.5 0.0018 4E-08 75.9 14.9 222 705-1131 15-238 (367)
324 PHA00729 NTP-binding motif con 97.4 0.0005 1.1E-08 75.4 9.5 25 721-745 18-42 (226)
325 KOG0478 DNA replication licens 97.4 0.00025 5.5E-09 86.3 7.7 165 688-872 431-626 (804)
326 TIGR02688 conserved hypothetic 97.4 0.0095 2.1E-07 70.8 20.1 97 719-836 208-314 (449)
327 COG1224 TIP49 DNA helicase TIP 97.4 0.00013 2.9E-09 83.1 4.1 49 1107-1155 65-113 (450)
328 cd01124 KaiC KaiC is a circadi 97.4 0.00089 1.9E-08 70.4 10.1 35 722-756 1-35 (187)
329 COG1484 DnaC DNA replication p 97.4 0.00022 4.7E-09 79.9 5.7 53 1110-1163 108-167 (254)
330 COG1618 Predicted nucleotide k 97.3 0.0011 2.4E-08 68.6 9.7 28 720-747 5-32 (179)
331 PRK09361 radB DNA repair and r 97.3 0.0008 1.7E-08 73.5 9.4 42 716-757 19-60 (225)
332 cd00983 recA RecA is a bacter 97.3 0.00092 2E-08 77.2 10.2 119 716-834 51-189 (325)
333 smart00382 AAA ATPases associa 97.3 0.0003 6.5E-09 68.1 5.3 38 1109-1147 4-43 (148)
334 PRK10536 hypothetical protein; 97.3 0.0023 5E-08 71.5 12.7 45 684-743 53-97 (262)
335 COG2256 MGS1 ATPase related to 97.3 0.00018 3.9E-09 83.4 4.0 46 1109-1163 50-95 (436)
336 PRK06067 flagellar accessory p 97.3 0.0016 3.4E-08 71.7 11.1 82 716-797 21-133 (234)
337 PRK08181 transposase; Validate 97.3 0.00026 5.7E-09 79.9 5.1 40 1109-1149 108-149 (269)
338 PRK08939 primosomal protein Dn 97.3 0.00029 6.4E-09 80.9 5.5 42 1108-1150 157-200 (306)
339 COG2255 RuvB Holliday junction 97.3 0.00018 4E-09 80.1 3.5 34 1110-1145 55-88 (332)
340 KOG0743 AAA+-type ATPase [Post 97.2 0.00017 3.8E-09 84.8 3.3 47 1109-1163 237-283 (457)
341 KOG0480 DNA replication licens 97.2 0.0047 1E-07 75.1 15.2 197 686-907 345-571 (764)
342 PRK08533 flagellar accessory p 97.2 0.0024 5.2E-08 70.6 11.7 114 716-836 20-162 (230)
343 PF13207 AAA_17: AAA domain; P 97.2 0.00029 6.3E-09 68.8 4.1 31 1110-1142 2-32 (121)
344 KOG2543 Origin recognition com 97.2 0.0029 6.3E-08 73.2 12.4 160 688-873 8-194 (438)
345 PF07728 AAA_5: AAA domain (dy 97.2 0.00035 7.5E-09 70.3 4.6 33 1110-1144 2-34 (139)
346 PF00493 MCM: MCM2/3/5 family 97.2 9.7E-05 2.1E-09 85.8 0.6 167 688-875 26-224 (331)
347 PF07693 KAP_NTPase: KAP famil 97.2 0.0081 1.7E-07 69.0 16.1 78 784-874 172-265 (325)
348 PRK06835 DNA replication prote 97.2 0.00037 8E-09 80.9 4.7 40 1109-1149 185-226 (329)
349 PRK00149 dnaA chromosomal repl 97.1 0.00043 9.3E-09 83.7 5.3 47 1107-1154 149-198 (450)
350 PF13191 AAA_16: AAA ATPase do 97.1 0.0011 2.4E-08 69.1 7.6 50 688-747 2-51 (185)
351 PF00448 SRP54: SRP54-type pro 97.1 0.0034 7.4E-08 67.7 11.3 112 720-840 1-130 (196)
352 KOG1968 Replication factor C, 97.1 0.00091 2E-08 85.7 7.8 163 722-907 359-533 (871)
353 PRK09376 rho transcription ter 97.1 0.0018 3.9E-08 76.2 9.5 115 720-834 169-317 (416)
354 TIGR01650 PD_CobS cobaltochela 97.1 0.00036 7.8E-09 80.4 3.8 44 1107-1153 65-110 (327)
355 PRK09183 transposase/IS protei 97.1 0.0016 3.5E-08 73.2 9.0 55 1108-1163 103-160 (259)
356 PRK14974 cell division protein 97.1 0.0043 9.4E-08 72.2 12.6 37 720-756 140-176 (336)
357 PRK00080 ruvB Holliday junctio 97.1 0.00041 8.8E-09 80.4 4.0 33 1110-1144 54-86 (328)
358 PRK06893 DNA replication initi 97.1 0.00037 7.9E-09 76.8 3.4 25 1107-1131 39-63 (229)
359 PRK04296 thymidine kinase; Pro 97.1 0.0018 3.9E-08 69.3 8.6 33 722-754 4-36 (190)
360 PRK14086 dnaA chromosomal repl 97.1 0.00058 1.3E-08 84.4 5.4 52 1110-1161 317-371 (617)
361 cd00009 AAA The AAA+ (ATPases 97.1 0.00065 1.4E-08 66.6 4.8 44 1109-1152 21-65 (151)
362 PRK06921 hypothetical protein; 97.0 0.00068 1.5E-08 76.5 5.4 42 1108-1149 118-161 (266)
363 cd00984 DnaB_C DnaB helicase C 97.0 0.0031 6.8E-08 69.4 10.5 41 716-756 9-50 (242)
364 cd01121 Sms Sms (bacterial rad 97.0 0.0018 4E-08 76.3 9.2 81 716-798 78-172 (372)
365 PF13604 AAA_30: AAA domain; P 97.0 0.00077 1.7E-08 72.6 5.4 103 721-836 19-132 (196)
366 PRK11889 flhF flagellar biosyn 97.0 0.0067 1.5E-07 71.5 13.3 106 720-834 241-361 (436)
367 TIGR00635 ruvB Holliday juncti 97.0 0.00053 1.1E-08 78.2 4.2 32 1110-1143 33-64 (305)
368 TIGR00362 DnaA chromosomal rep 97.0 0.0006 1.3E-08 81.3 4.7 43 1110-1152 139-184 (405)
369 cd01393 recA_like RecA is a b 97.0 0.0029 6.4E-08 68.8 9.7 119 716-834 15-166 (226)
370 KOG1942 DNA helicase, TBP-inte 97.0 0.00059 1.3E-08 76.0 4.2 54 1106-1159 63-119 (456)
371 PRK13342 recombination factor 97.0 0.00076 1.7E-08 80.7 5.5 33 1109-1143 38-70 (413)
372 KOG0745 Putative ATP-dependent 97.0 0.00069 1.5E-08 79.0 4.8 53 1109-1163 228-282 (564)
373 COG1373 Predicted ATPase (AAA+ 97.0 0.0044 9.6E-08 73.9 11.8 122 722-867 39-162 (398)
374 cd01394 radB RadB. The archaea 97.0 0.0033 7.1E-08 68.3 9.8 40 716-755 15-54 (218)
375 PRK00771 signal recognition pa 97.0 0.0079 1.7E-07 72.4 13.9 107 719-836 94-218 (437)
376 cd01128 rho_factor Transcripti 97.0 0.004 8.6E-08 69.7 10.6 29 719-747 15-43 (249)
377 cd00464 SK Shikimate kinase (S 97.0 0.00075 1.6E-08 68.7 4.5 39 1110-1152 2-40 (154)
378 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.00077 1.7E-08 73.2 4.7 40 1110-1149 41-81 (226)
379 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0025 5.3E-08 67.8 8.3 77 717-795 22-100 (177)
380 KOG0989 Replication factor C, 96.9 0.00054 1.2E-08 77.2 3.4 26 1108-1133 58-83 (346)
381 PRK11823 DNA repair protein Ra 96.9 0.004 8.7E-08 75.3 11.1 81 716-798 76-170 (446)
382 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0028 6E-08 69.5 8.9 120 716-835 15-168 (235)
383 PF06309 Torsin: Torsin; Inte 96.9 0.0039 8.4E-08 62.5 9.0 57 687-749 26-82 (127)
384 PRK05642 DNA replication initi 96.9 0.0011 2.3E-08 73.5 5.6 38 1110-1148 48-87 (234)
385 PRK12723 flagellar biosynthesi 96.9 0.007 1.5E-07 71.8 12.5 112 719-841 173-303 (388)
386 PHA00729 NTP-binding motif con 96.9 0.00085 1.8E-08 73.7 4.5 39 1110-1149 20-73 (226)
387 PF07726 AAA_3: ATPase family 96.9 0.00063 1.4E-08 68.3 3.2 31 1110-1142 2-32 (131)
388 TIGR01618 phage_P_loop phage n 96.9 0.0018 3.9E-08 71.1 7.0 23 720-742 12-34 (220)
389 PRK09354 recA recombinase A; P 96.9 0.0039 8.5E-08 72.7 10.1 118 716-833 56-193 (349)
390 COG3854 SpoIIIAA ncharacterize 96.9 0.0035 7.5E-08 68.3 8.8 78 720-797 137-231 (308)
391 PRK06526 transposase; Provisio 96.9 0.00055 1.2E-08 76.7 3.0 41 1108-1149 99-141 (254)
392 PRK00131 aroK shikimate kinase 96.9 0.001 2.3E-08 68.8 4.5 37 1109-1149 6-42 (175)
393 smart00763 AAA_PrkA PrkA AAA d 96.8 0.00097 2.1E-08 77.7 4.4 53 1110-1163 81-143 (361)
394 PF03266 NTPase_1: NTPase; In 96.8 0.0011 2.5E-08 69.7 4.4 24 722-745 1-24 (168)
395 PRK12402 replication factor C 96.8 0.0012 2.5E-08 76.2 4.9 39 1108-1146 37-78 (337)
396 PF13207 AAA_17: AAA domain; P 96.8 0.0012 2.7E-08 64.4 4.4 30 723-757 2-31 (121)
397 COG4088 Predicted nucleotide k 96.8 0.0031 6.7E-08 67.7 7.5 26 723-748 4-29 (261)
398 KOG3347 Predicted nucleotide k 96.8 0.001 2.2E-08 67.9 3.8 38 1106-1147 6-43 (176)
399 PLN03025 replication factor C 96.8 0.0009 1.9E-08 77.3 3.8 36 1108-1143 35-73 (319)
400 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.0081 1.7E-07 67.6 11.3 42 716-757 32-73 (259)
401 PRK08903 DnaA regulatory inact 96.8 0.0013 2.9E-08 71.9 5.0 37 1110-1146 45-82 (227)
402 cd00046 DEXDc DEAD-like helica 96.8 0.0065 1.4E-07 58.9 9.3 25 722-746 2-26 (144)
403 cd01131 PilT Pilus retraction 96.8 0.0023 5E-08 68.9 6.7 72 722-794 3-84 (198)
404 PRK15455 PrkA family serine pr 96.8 0.0016 3.4E-08 79.6 5.8 57 683-746 73-129 (644)
405 PRK12422 chromosomal replicati 96.8 0.0012 2.7E-08 79.6 4.8 42 1110-1152 144-187 (445)
406 cd01122 GP4d_helicase GP4d_hel 96.8 0.0035 7.7E-08 70.3 8.2 41 716-756 26-67 (271)
407 PRK04195 replication factor C 96.8 0.0011 2.3E-08 81.0 4.3 33 1110-1144 42-74 (482)
408 PRK08118 topology modulation p 96.8 0.001 2.2E-08 69.8 3.5 31 1109-1141 3-33 (167)
409 TIGR00064 ftsY signal recognit 96.8 0.023 5E-07 64.5 14.6 41 718-758 70-110 (272)
410 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.0085 1.8E-07 66.4 10.9 29 716-744 17-45 (237)
411 PRK14722 flhF flagellar biosyn 96.7 0.0034 7.4E-08 73.9 8.0 114 718-843 135-265 (374)
412 cd03283 ABC_MutS-like MutS-lik 96.7 0.007 1.5E-07 65.4 9.8 78 716-794 21-115 (199)
413 cd03216 ABC_Carb_Monos_I This 96.7 0.0078 1.7E-07 62.8 9.8 112 716-838 22-143 (163)
414 PRK05973 replicative DNA helic 96.7 0.013 2.8E-07 65.2 11.9 41 716-756 60-100 (237)
415 PRK10787 DNA-binding ATP-depen 96.7 0.0014 3E-08 84.1 5.0 56 1106-1163 348-412 (784)
416 PRK14088 dnaA chromosomal repl 96.7 0.0013 2.8E-08 79.3 4.3 42 1110-1151 133-177 (440)
417 PHA02244 ATPase-like protein 96.7 0.0014 3.1E-08 76.5 4.4 30 1110-1141 122-151 (383)
418 PF06309 Torsin: Torsin; Inte 96.7 0.0025 5.5E-08 63.8 5.5 22 1110-1131 56-77 (127)
419 COG1485 Predicted ATPase [Gene 96.7 0.0022 4.7E-08 73.9 5.6 109 718-840 63-175 (367)
420 TIGR01420 pilT_fam pilus retra 96.7 0.0029 6.4E-08 73.9 6.8 74 720-794 122-205 (343)
421 PRK14530 adenylate kinase; Pro 96.7 0.0018 3.9E-08 70.5 4.6 32 1107-1140 3-34 (215)
422 PRK13947 shikimate kinase; Pro 96.6 0.002 4.4E-08 67.0 4.7 40 1110-1153 4-43 (171)
423 PF13671 AAA_33: AAA domain; P 96.6 0.0023 5E-08 64.2 4.9 38 1110-1151 2-39 (143)
424 PRK08084 DNA replication initi 96.6 0.0016 3.4E-08 72.1 4.0 33 1109-1141 47-82 (235)
425 PRK04841 transcriptional regul 96.6 0.023 4.9E-07 74.3 15.3 159 721-900 33-223 (903)
426 COG0714 MoxR-like ATPases [Gen 96.6 0.0017 3.8E-08 75.3 4.2 34 1107-1143 44-77 (329)
427 PF09848 DUF2075: Uncharacteri 96.6 0.0065 1.4E-07 71.2 8.9 76 722-798 3-97 (352)
428 PF06745 KaiC: KaiC; InterPro 96.6 0.0084 1.8E-07 65.5 9.2 81 716-796 15-127 (226)
429 PRK06620 hypothetical protein; 96.6 0.0017 3.6E-08 71.0 3.6 22 1110-1131 47-68 (214)
430 PHA02624 large T antigen; Prov 96.6 0.0096 2.1E-07 73.3 10.3 120 716-857 427-560 (647)
431 PRK10416 signal recognition pa 96.5 0.028 6E-07 65.2 13.7 39 719-757 113-151 (318)
432 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0078 1.7E-07 62.0 8.3 108 717-839 22-142 (157)
433 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.0075 1.6E-07 61.6 8.1 77 716-794 22-98 (144)
434 PF00308 Bac_DnaA: Bacterial d 96.5 0.0025 5.5E-08 69.9 4.8 45 1106-1151 34-81 (219)
435 PHA02544 44 clamp loader, smal 96.5 0.0026 5.6E-08 73.0 5.1 33 1110-1144 46-78 (316)
436 TIGR00416 sms DNA repair prote 96.5 0.009 1.9E-07 72.5 9.8 81 716-798 90-184 (454)
437 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0065 1.4E-07 68.6 8.1 97 683-795 57-160 (264)
438 cd03281 ABC_MSH5_euk MutS5 hom 96.5 0.024 5.2E-07 62.0 12.0 76 721-796 30-120 (213)
439 PRK08118 topology modulation p 96.5 0.0044 9.5E-08 65.1 6.0 24 722-745 3-26 (167)
440 PRK14531 adenylate kinase; Pro 96.5 0.0024 5.3E-08 67.7 4.1 30 1109-1140 4-33 (183)
441 PRK13341 recombination factor 96.5 0.0021 4.5E-08 81.8 4.1 34 1108-1143 53-86 (725)
442 PRK00131 aroK shikimate kinase 96.5 0.0029 6.2E-08 65.5 4.5 28 718-745 2-29 (175)
443 COG1066 Sms Predicted ATP-depe 96.5 0.019 4.1E-07 67.4 11.5 153 716-875 89-259 (456)
444 PRK07261 topology modulation p 96.5 0.0056 1.2E-07 64.5 6.7 24 722-745 2-25 (171)
445 PF00437 T2SE: Type II/IV secr 96.5 0.0026 5.6E-08 71.5 4.4 100 684-795 102-208 (270)
446 PHA02774 E1; Provisional 96.4 0.0093 2E-07 73.1 9.2 30 716-745 430-459 (613)
447 PRK10867 signal recognition pa 96.4 0.035 7.6E-07 66.9 14.0 79 719-797 99-196 (433)
448 PF13831 PHD_2: PHD-finger; PD 96.4 0.00072 1.6E-08 53.1 -0.2 26 460-485 2-27 (36)
449 PRK12724 flagellar biosynthesi 96.4 0.16 3.6E-06 60.7 19.2 39 720-758 223-262 (432)
450 TIGR01425 SRP54_euk signal rec 96.4 0.037 8.1E-07 66.4 14.0 78 719-796 99-194 (429)
451 TIGR01448 recD_rel helicase, p 96.4 0.012 2.5E-07 75.4 10.4 106 721-840 339-458 (720)
452 cd02020 CMPK Cytidine monophos 96.4 0.0025 5.4E-08 64.1 3.6 30 1110-1141 2-31 (147)
453 TIGR02858 spore_III_AA stage I 96.4 0.0052 1.1E-07 69.5 6.4 27 721-747 112-138 (270)
454 PF01078 Mg_chelatase: Magnesi 96.4 0.0021 4.5E-08 69.6 3.0 23 1110-1132 25-47 (206)
455 PRK13949 shikimate kinase; Pro 96.4 0.0034 7.3E-08 66.1 4.5 36 1110-1149 4-39 (169)
456 PRK14962 DNA polymerase III su 96.4 0.0023 4.9E-08 77.8 3.5 24 1109-1132 38-61 (472)
457 cd02021 GntK Gluconate kinase 96.4 0.0032 7E-08 64.1 4.0 34 1110-1147 2-35 (150)
458 cd03280 ABC_MutS2 MutS2 homolo 96.3 0.022 4.8E-07 61.3 10.6 24 718-741 25-49 (200)
459 PRK07261 topology modulation p 96.3 0.0037 8E-08 65.9 4.4 32 1109-1142 2-33 (171)
460 PRK13695 putative NTPase; Prov 96.3 0.024 5.3E-07 59.5 10.6 24 722-745 2-25 (174)
461 cd03246 ABCC_Protease_Secretio 96.3 0.024 5.2E-07 59.6 10.5 29 717-745 25-53 (173)
462 PRK00625 shikimate kinase; Pro 96.3 0.0031 6.6E-08 66.8 3.8 31 1110-1142 3-33 (173)
463 cd03230 ABC_DR_subfamily_A Thi 96.3 0.026 5.6E-07 59.3 10.7 28 717-744 23-50 (173)
464 PTZ00088 adenylate kinase 1; P 96.3 0.0038 8.2E-08 69.0 4.6 38 1109-1150 8-45 (229)
465 PF00910 RNA_helicase: RNA hel 96.3 0.0024 5.2E-08 62.0 2.7 22 1110-1131 1-22 (107)
466 PRK14087 dnaA chromosomal repl 96.3 0.0048 1E-07 74.7 5.8 43 1110-1152 144-189 (450)
467 PRK09519 recA DNA recombinatio 96.3 0.014 3.1E-07 74.3 9.9 83 716-798 56-152 (790)
468 PRK13948 shikimate kinase; Pro 96.3 0.0038 8.3E-08 66.6 4.2 47 1110-1163 13-59 (182)
469 COG0466 Lon ATP-dependent Lon 96.3 0.0036 7.7E-08 77.4 4.4 38 1104-1143 347-384 (782)
470 PLN02200 adenylate kinase fami 96.3 0.0046 9.9E-08 68.6 4.9 38 1109-1150 45-82 (234)
471 PF05707 Zot: Zonular occluden 96.3 0.0038 8.2E-08 67.0 4.2 66 784-857 79-144 (193)
472 PRK04328 hypothetical protein; 96.3 0.026 5.6E-07 63.1 10.9 29 716-744 19-47 (249)
473 PF02562 PhoH: PhoH-like prote 96.3 0.0079 1.7E-07 65.4 6.5 25 722-746 21-45 (205)
474 PRK06581 DNA polymerase III su 96.3 0.041 8.9E-07 61.0 12.0 150 720-890 15-176 (263)
475 PRK12726 flagellar biosynthesi 96.3 0.045 9.8E-07 64.5 13.1 66 690-758 179-244 (407)
476 TIGR03880 KaiC_arch_3 KaiC dom 96.2 0.03 6.6E-07 61.2 11.1 41 716-756 12-52 (224)
477 COG1116 TauB ABC-type nitrate/ 96.2 0.0085 1.8E-07 66.4 6.7 29 717-745 26-54 (248)
478 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.022 4.7E-07 59.6 9.4 32 723-754 5-36 (159)
479 PRK11331 5-methylcytosine-spec 96.2 0.0027 5.9E-08 76.0 3.0 33 1110-1142 197-229 (459)
480 cd03228 ABCC_MRP_Like The MRP 96.2 0.02 4.3E-07 60.0 9.2 30 716-745 24-53 (171)
481 TIGR02782 TrbB_P P-type conjug 96.2 0.012 2.6E-07 67.6 8.2 75 720-794 132-214 (299)
482 cd03115 SRP The signal recogni 96.2 0.045 9.8E-07 57.2 11.9 36 722-757 2-37 (173)
483 COG4650 RtcR Sigma54-dependent 96.2 0.0052 1.1E-07 68.5 4.8 89 718-821 206-308 (531)
484 PF13671 AAA_33: AAA domain; P 96.2 0.014 3E-07 58.6 7.6 23 723-745 2-24 (143)
485 TIGR01618 phage_P_loop phage n 96.2 0.0027 5.8E-08 69.7 2.5 31 1109-1143 14-44 (220)
486 cd03227 ABC_Class2 ABC-type Cl 96.2 0.035 7.7E-07 57.8 10.8 27 720-746 21-47 (162)
487 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0082 1.8E-07 63.1 6.1 24 1108-1131 4-27 (188)
488 PF00406 ADK: Adenylate kinase 96.2 0.0037 7.9E-08 64.1 3.3 35 1112-1150 1-35 (151)
489 TIGR02397 dnaX_nterm DNA polym 96.2 0.0062 1.4E-07 70.8 5.6 23 1110-1132 39-61 (355)
490 KOG0482 DNA replication licens 96.2 0.025 5.4E-07 67.4 10.2 247 688-954 344-639 (721)
491 COG1121 ZnuC ABC-type Mn/Zn tr 96.2 0.015 3.2E-07 65.0 8.1 29 717-745 27-55 (254)
492 PRK08727 hypothetical protein; 96.1 0.0035 7.7E-08 69.3 3.2 38 1110-1147 44-82 (233)
493 PF04665 Pox_A32: Poxvirus A32 96.1 0.055 1.2E-06 60.3 12.4 137 718-870 11-168 (241)
494 TIGR01313 therm_gnt_kin carboh 96.1 0.0069 1.5E-07 62.7 5.1 30 1110-1141 1-30 (163)
495 PF05272 VirE: Virulence-assoc 96.1 0.017 3.7E-07 62.5 8.2 111 716-858 48-169 (198)
496 cd03243 ABC_MutS_homologs The 96.1 0.031 6.7E-07 60.3 10.2 25 718-742 27-51 (202)
497 smart00534 MUTSac ATPase domai 96.1 0.029 6.4E-07 59.7 9.8 20 723-742 2-21 (185)
498 PRK05703 flhF flagellar biosyn 96.1 0.036 7.8E-07 66.7 11.6 39 720-758 221-261 (424)
499 PTZ00202 tuzin; Provisional 96.1 0.75 1.6E-05 55.3 21.7 52 684-745 260-311 (550)
500 cd01130 VirB11-like_ATPase Typ 96.1 0.0061 1.3E-07 64.9 4.4 75 718-794 23-110 (186)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-59 Score=538.80 Aligned_cols=372 Identities=32% Similarity=0.529 Sum_probs=308.7
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
.++|.+|+|++....+|.+++.. +.+|+.|..+|+.|+++||||||||||||+||++||++++ ++|+.+.+.++
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-----vPf~~isApei 259 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-----VPFLSISAPEI 259 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-----CceEeecchhh
Confidence 46899999999999999999988 9999999999999999999999999999999999999998 89999999999
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCC----CceEEEccCCCC
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSR----GSVVVIGATNRP 837 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~----~~ViVIaTTN~~ 837 (1167)
++.+.|+++++++.+|+.|+...|||+||||||.+.+++...+..+..+++.+|+..|+.+... ..|+||||||+|
T Consensus 260 vSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 260 VSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred hcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 9999999999999999999999999999999999999999988899999999999999998543 569999999999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCh
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPL 917 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~ 917 (1167)
+.||++|+|+|||++.|.+..|+..+|.+||+.+++.+.+.. +.++..||..|.||.++||.+||.+|+..|++|-+..
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQ 418 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999877664 5789999999999999999999999999999884321
Q ss_pred HH----------------HH-------------------HHHHHHhh---ccc-cccCCccccCHHHHHHHhhcCCCCCC
Q 001066 918 QE----------------IL-------------------SAAAEKAF---CSK-RVTLPSFAVEERDWLEALSCSPPPCS 958 (1167)
Q Consensus 918 ~d----------------i~-------------------~~~e~~~~---~~~-~~~l~~i~It~~D~~~AL~~~~P~~S 958 (1167)
.. +. ......+. ... ...+..+.|...||..|+..++|+.
T Consensus 419 ~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSa- 497 (802)
T KOG0733|consen 419 SSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSA- 497 (802)
T ss_pred ccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcch-
Confidence 00 00 00000000 000 0223457789999999999999765
Q ss_pred cccccccccccccCCCCCCccccccchhhhhhhhhhhhccccCCcchhHHHHHHHHHHHhhhhhhhccccccccchhhhH
Q 001066 959 KREAGIAAHDLVSSPLPSHLIPCLLQPLSTLLVSLYLDERLWLPPSLTKATKMIQSVIVSALDKKKLLSDHWWSHINDFL 1038 (1167)
Q Consensus 959 ~re~~~a~~d~~~a~L~~~iip~v~w~l~~l~~~~~l~E~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~~~~tga~~d~~ 1038 (1167)
.|+.+.. +|.++|.- -|+++.+.
T Consensus 498 kREGF~t-------------VPdVtW~d--------------------------------------------IGaL~~vR 520 (802)
T KOG0733|consen 498 KREGFAT-------------VPDVTWDD--------------------------------------------IGALEEVR 520 (802)
T ss_pred hccccee-------------cCCCChhh--------------------------------------------cccHHHHH
Confidence 6666654 45566661 12233333
Q ss_pred HHHHHHHHHHHHHhhcccccCCcccCCCccccCCCCCccCCCCCccccccccchhhhhhhccccCCCCCceEEEEcCCCC
Q 001066 1039 EEADIAKEIERRLQYAGIITGEASFSGLDAFAGDSNDDCANSKPSIAHSYGINCSLLQNISCTASKGSGFRVLISGSPGS 1118 (1167)
Q Consensus 1039 ~~~~i~r~i~~~~~~~gl~~~~~~~~~~~~~~~~~~~f~~~~kp~~~~~~~~~~~~~~~~~~~~~~~~rp~iLf~GPpGt 1118 (1167)
.+..+ +|+.=++ +|.+| .+.|+.++.| |||+|||||
T Consensus 521 ~eL~~--aI~~PiK----------------------------~pd~~----------k~lGi~~PsG----vLL~GPPGC 556 (802)
T KOG0733|consen 521 LELNM--AILAPIK----------------------------RPDLF----------KALGIDAPSG----VLLCGPPGC 556 (802)
T ss_pred HHHHH--HHhhhcc----------------------------CHHHH----------HHhCCCCCCc----eEEeCCCCc
Confidence 33222 2221111 23333 4456666665 999999999
Q ss_pred cHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1119 GQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1119 GKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
|||+||||+|++- | +||++|+||||||||.||||..||++||+.
T Consensus 557 GKTLlAKAVANEa-g-~NFisVKGPELlNkYVGESErAVR~vFqRA 600 (802)
T KOG0733|consen 557 GKTLLAKAVANEA-G-ANFISVKGPELLNKYVGESERAVRQVFQRA 600 (802)
T ss_pred cHHHHHHHHhhhc-c-CceEeecCHHHHHHHhhhHHHHHHHHHHHh
Confidence 9999999999998 5 999999999999999999999999999985
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-48 Score=452.07 Aligned_cols=341 Identities=36% Similarity=0.562 Sum_probs=292.1
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+ ++++|+......+.+++.+|+.++..+...|+++++++|+|||||+|||.+++++|++.+ ..++.++++.++
T Consensus 182 ~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~-----a~~~~i~~peli 255 (693)
T KOG0730|consen 182 VG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG-----AFLFLINGPELI 255 (693)
T ss_pred cc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC-----ceeEecccHHHH
Confidence 45 688999999999999999999999999999999999999999999999999999999988 788999999999
Q ss_pred hhhhchHHHHHHHHHHHHHhcC-CcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCC
Q 001066 763 GKYVGDAERQLRLLFQVAEKCQ-PSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVD 841 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~~~-psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld 841 (1167)
.++.|+.+..++.+|+++.+.+ |+||||||||.|++++..... ...++..+|+.+|+++...++++||++||+|+.||
T Consensus 256 ~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 256 SKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred HhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999999 999999999999997765554 57899999999999999899999999999999999
Q ss_pred cccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Q 001066 842 PALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEIL 921 (1167)
Q Consensus 842 ~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~ 921 (1167)
++++| |||++.+.+..|+..+|.+|++.++..++.. ++.++..+|..+.||+++||..+|..|...+.++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-------- 404 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR-------- 404 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------
Confidence 99999 9999999999999999999999999998876 6789999999999999999999999999888765
Q ss_pred HHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccCCCCCCccccccchhhhhhhhhhhhccccC
Q 001066 922 SAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSSPLPSHLIPCLLQPLSTLLVSLYLDERLWL 1001 (1167)
Q Consensus 922 ~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~~~iip~v~w~l~~l~~~~~l~E~l~L 1001 (1167)
+..+|..|+..++|+. .|++. .-+|++.|.-..
T Consensus 405 --------------------~~~~~~~A~~~i~psa-~Re~~-------------ve~p~v~W~dIG------------- 437 (693)
T KOG0730|consen 405 --------------------TLEIFQEALMGIRPSA-LREIL-------------VEMPNVSWDDIG------------- 437 (693)
T ss_pred --------------------hHHHHHHHHhcCCchh-hhhee-------------ccCCCCChhhcc-------------
Confidence 4567888888888754 33322 335677887211
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHHHHhhcccccCCcccCCCccccCCCCCccCCCC
Q 001066 1002 PPSLTKATKMIQSVIVSALDKKKLLSDHWWSHINDFLEEADIAKEIERRLQYAGIITGEASFSGLDAFAGDSNDDCANSK 1081 (1167)
Q Consensus 1002 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~~~~~~~~~~~~~~~~~~~f~~~~k 1081 (1167)
.+-.+...|++.+ .+ |. .
T Consensus 438 --GlE~lK~elq~~V----~~---p~----------------------------------------------------~- 455 (693)
T KOG0730|consen 438 --GLEELKRELQQAV----EW---PL----------------------------------------------------K- 455 (693)
T ss_pred --CHHHHHHHHHHHH----hh---hh----------------------------------------------------h-
Confidence 1111111122111 00 00 0
Q ss_pred CccccccccchhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHh
Q 001066 1082 PSIAHSYGINCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLL 1161 (1167)
Q Consensus 1082 p~~~~~~~~~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF 1161 (1167)
|.-.|-+.|..|+++ ||||||||||||++|||||++. ++||++|++|||++||.||||++||+||
T Consensus 456 ---------~pe~F~r~Gi~ppkG----VLlyGPPGC~KT~lAkalAne~--~~nFlsvkgpEL~sk~vGeSEr~ir~iF 520 (693)
T KOG0730|consen 456 ---------HPEKFARFGISPPKG----VLLYGPPGCGKTLLAKALANEA--GMNFLSVKGPELFSKYVGESERAIREVF 520 (693)
T ss_pred ---------chHHHHHhcCCCCce----EEEECCCCcchHHHHHHHhhhh--cCCeeeccCHHHHHHhcCchHHHHHHHH
Confidence 333445567777777 9999999999999999999998 4999999999999999999999999999
Q ss_pred hhc
Q 001066 1162 SMF 1164 (1167)
Q Consensus 1162 ~~~ 1164 (1167)
.+.
T Consensus 521 ~kA 523 (693)
T KOG0730|consen 521 RKA 523 (693)
T ss_pred HHH
Confidence 985
No 3
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-45 Score=423.65 Aligned_cols=346 Identities=34% Similarity=0.518 Sum_probs=295.8
Q ss_pred cchhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhhc----c----c-------cCh------------------
Q 001066 603 YGDQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLEN----C----G-------EDE------------------ 649 (1167)
Q Consensus 603 ~g~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~~----~----~-------~d~------------------ 649 (1167)
.|+.++..|+++|.+|+||++.+||.+|+..+|.|+.+...+ . + .+.
T Consensus 380 ~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v 459 (802)
T KOG0733|consen 380 SGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRV 459 (802)
T ss_pred CCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHH
Confidence 457779999999999999999999999999999886532110 0 0 011
Q ss_pred -----------------HHHHHhhHHHHHHHhhccCcccCCCCCCCCCcccCcccccChHHHHHHHHHHHHccccChhhh
Q 001066 650 -----------------EFLKREGKRLHRDLLRIAPVYIGGSDSDSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFF 712 (1167)
Q Consensus 650 -----------------~~lk~~~~d~~~aL~~v~p~~~~~~~~~~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~ 712 (1167)
..+.+...||..||..|+|+.-+ +....-|.++|+||++++++..+|..+|.+|+.+|+.|
T Consensus 460 ~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakR--EGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~ 537 (802)
T KOG0733|consen 460 VQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKR--EGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLF 537 (802)
T ss_pred HHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhc--ccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHH
Confidence 12345567899999999998643 33456677899999999999999999999999999999
Q ss_pred hccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcC
Q 001066 713 DNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDE 792 (1167)
Q Consensus 713 ~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDE 792 (1167)
+.+|+..|.+|||+||||||||.||+|+|++.+ ++|+++.+++++++|+|+++..++.+|..|+.+.|||||+||
T Consensus 538 k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag-----~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDE 612 (802)
T KOG0733|consen 538 KALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG-----ANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDE 612 (802)
T ss_pred HHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc-----CceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecc
Confidence 999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred CCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhh
Q 001066 793 IDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHT 872 (1167)
Q Consensus 793 ID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l 872 (1167)
||.|.+.++..+...+.+++++||..|+++..+.+|.|||+||+|+.+||+++|||||+..++|++|+.++|.+||+.++
T Consensus 613 iDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 613 IDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred hhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHh
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC-CChhHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCccccCHHHHHHH
Q 001066 873 ERWPKP-VTGSLLKWIAARTA--GFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEA 949 (1167)
Q Consensus 873 ~~~~~~-l~d~~L~~LA~~t~--G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~A 949 (1167)
+..... .++.+++.||..+. |||++||..||++|...|+++.+- ++.. -..........+.++..+|.+|
T Consensus 693 kn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~--~~~~-----~~~~~~~~~~~~~~t~~hF~eA 765 (802)
T KOG0733|consen 693 KNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF--EIDS-----SEDDVTVRSSTIIVTYKHFEEA 765 (802)
T ss_pred ccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHh--hccc-----cCcccceeeeeeeecHHHHHHH
Confidence 853322 35688999999887 999999999999999999987532 1110 0000011111467889999999
Q ss_pred hhcCCCCCCcccc
Q 001066 950 LSCSPPPCSKREA 962 (1167)
Q Consensus 950 L~~~~P~~S~re~ 962 (1167)
+++++|+++.++.
T Consensus 766 ~~~i~pSv~~~dr 778 (802)
T KOG0733|consen 766 FQRIRPSVSERDR 778 (802)
T ss_pred HHhcCCCccHHHH
Confidence 9999998876643
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-45 Score=428.87 Aligned_cols=310 Identities=35% Similarity=0.582 Sum_probs=284.9
Q ss_pred chhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhhccccChHHHHHhhHHHHHHHhhccCcccCCCCCCCCCccc
Q 001066 604 GDQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLENCGEDEEFLKREGKRLHRDLLRIAPVYIGGSDSDSGKLFE 683 (1167)
Q Consensus 604 g~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~~~~~d~~~lk~~~~d~~~aL~~v~p~~~~~~~~~~~~~~~ 683 (1167)
++..+..++..+.+|+++++..+|++|+..++.+ +..+|..++..+.|+..+... .+.+.+
T Consensus 371 ~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----------------~~~~~~~A~~~i~psa~Re~~--ve~p~v 431 (693)
T KOG0730|consen 371 SDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----------------TLEIFQEALMGIRPSALREIL--VEMPNV 431 (693)
T ss_pred chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHhcCCchhhhhee--ccCCCC
Confidence 6788999999999999999999999997665544 567889999999998765543 566778
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG 763 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls 763 (1167)
+|+||+|++++|+.|++.|.+|+.+++.|.++|+.++++||||||||||||++|++||.+++ .+|+++.++++++
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~-----~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG-----MNFLSVKGPELFS 506 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc-----CCeeeccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 7999999999999
Q ss_pred hhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcc
Q 001066 764 KYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPA 843 (1167)
Q Consensus 764 ~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~a 843 (1167)
+|+|++|..++.+|+.|+...|+|||+||||.+..+|+........+++++||+.|+++....+|+|||+||+|+.||++
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999887666677899999999999999999999999999999999999
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 001066 844 LRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSA 923 (1167)
Q Consensus 844 LlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~ 923 (1167)
|+|||||++.|+||+|+.+.|++||+.++++++.. ++.++..||..|.||+|+||.++|++|+..|+++.+.
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~------- 658 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-EDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE------- 658 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-ccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc-------
Confidence 99999999999999999999999999999998876 4479999999999999999999999999999987654
Q ss_pred HHHHhhccccccCCccccCHHHHHHHhhcCCCCCCc
Q 001066 924 AAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSK 959 (1167)
Q Consensus 924 ~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~ 959 (1167)
...|+..+|.+|++..+++.+.
T Consensus 659 --------------a~~i~~~hf~~al~~~r~s~~~ 680 (693)
T KOG0730|consen 659 --------------ATEITWQHFEEALKAVRPSLTS 680 (693)
T ss_pred --------------cccccHHHHHHHHHhhcccCCH
Confidence 2457789999999988875543
No 5
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-45 Score=448.82 Aligned_cols=532 Identities=44% Similarity=0.689 Sum_probs=397.3
Q ss_pred ccCCceEEeeccccCCceEEccCccccchHHHHhhcccccccCCCCCCCceeecCCCCCCcccccccCCCcceeccccce
Q 001066 511 GIAGTWVHQHCAVWSPEVYFAGLGCLKNIRAALCRGRALKCTRCGRPGATIGCRVDRCPRTYHLPCARANGCIFDHRKFL 590 (1167)
Q Consensus 511 t~~g~WvH~~CAlw~pev~~~~~~~l~~i~~~~~~~~~~~C~iC~~~GA~I~C~~~~C~~~FH~~CA~~~g~~~~~~~~~ 590 (1167)
...+.| |..|..|.|.+++.....+++......+..... . +- ...+| +|.+..|+.++.
T Consensus 117 ~~~~~r-~r~~r~r~~~vq~~~~~~~~~~~~~~~r~~~~~----~--~~---------~~~~~-~~~r~~~~~~~~---- 175 (1080)
T KOG0732|consen 117 ESTPGR-KRALRRRSPPVQFNLVSCLENSPARLERQRSNN----D--SR---------RTGRH-PCRRANGCRSDS---- 175 (1080)
T ss_pred cccccc-chhhhccCccchhcccchhhcChHHHhhccccc----c--cC---------CCCCC-cccccccccccc----
Confidence 345568 999999999999998777776665555544443 1 11 23344 788888988877
Q ss_pred eccccccccccCcchhHH-HHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhhccccChHHHHHhhHHHHHHHhhccCc
Q 001066 591 IACTDHRHLFQPYGDQYL-ARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLENCGEDEEFLKREGKRLHRDLLRIAPV 669 (1167)
Q Consensus 591 ~~C~~Hr~~fqp~g~q~l-e~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~~~~~d~~~lk~~~~d~~~aL~~v~p~ 669 (1167)
.-|..|++.|+|.+.... ......+..+...-+...+...+.-..-...+.+. ..+.+......+.+...+.+.
T Consensus 176 ~~~s~~~~~~~p~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~-----~~~~~~~t~~~~~~~~~~~~~ 250 (1080)
T KOG0732|consen 176 INDSDSRDHVPPGGRQLTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQ-----SLFDKLNTKGLQTAGLRVQKE 250 (1080)
T ss_pred cccccchhccCCCCchhhhhhhhcccccccccccchhhhhhhhhhhcccccccc-----hhhhhhhcCccccchhhcccc
Confidence 448999999999998722 12223333333333333332221111111111111 112222222223333333333
Q ss_pred ccCCCCCCCCCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC
Q 001066 670 YIGGSDSDSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK 749 (1167)
Q Consensus 670 ~~~~~~~~~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~ 749 (1167)
...+.......++|++|+|++.++.+|++.+..|+.||++|.++++++|++||||||||||||+.|+++|..+.....
T Consensus 251 --~d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~ 328 (1080)
T KOG0732|consen 251 --ADSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNR 328 (1080)
T ss_pred --cccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccccc
Confidence 344455556678999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceE
Q 001066 750 RIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVV 829 (1167)
Q Consensus 750 ~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~Vi 829 (1167)
.+.|+..++++.+++|+|+.+..++.+|++|++.+|+|||+||||.|++.++..+.+....++.+||.+|+++..++.|+
T Consensus 329 kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVv 408 (1080)
T KOG0732|consen 329 KISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVV 408 (1080)
T ss_pred ccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001066 830 VIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 830 VIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~ 909 (1167)
||||||+++.++++|+|||||++.++||.|+.+.|.+||..+...+...+....+..||..+.||.++||++||..|+..
T Consensus 409 vigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~ 488 (1080)
T KOG0732|consen 409 VIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALI 488 (1080)
T ss_pred EEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccCCCCCCccccccchhhhh
Q 001066 910 ALKRNFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSSPLPSHLIPCLLQPLSTL 989 (1167)
Q Consensus 910 A~~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~~~iip~v~w~l~~l 989 (1167)
++++..|.. +... ..+......+.|...||..|+.++.|++.++ ...+..||+..+.|.+... .
T Consensus 489 ~~~r~~Pq~--y~s~-----~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~------~~~~s~Pl~~~~~~ll~~~--~- 552 (1080)
T KOG0732|consen 489 ALRRSFPQI--YSSS-----DKLLIDVALIKVEVRDFVEAMSRITPSSRRS------SVIFSRPLSTYLKPLLPFQ--D- 552 (1080)
T ss_pred hhccccCee--eccc-----ccccccchhhhhhhHhhhhhhhccCCCCCcc------ccCCCCCCCcceecccchH--H-
Confidence 999987732 1110 1111233345689999999999998877655 3456677776666643311 0
Q ss_pred hhhhhhhccccCCcchhHHHHHHHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHHHHhhcccccCCcccCCCccc
Q 001066 990 LVSLYLDERLWLPPSLTKATKMIQSVIVSALDKKKLLSDHWWSHINDFLEEADIAKEIERRLQYAGIITGEASFSGLDAF 1069 (1167)
Q Consensus 990 ~~~~~l~E~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~~~~~~~~~~~~~ 1069 (1167)
+..++.+.++--.+ +++.- ...+ +..++ +
T Consensus 553 ----------------------~~~~iq~~~~va~~-----------------~~k~~--e~~~--~~v~~-----~--- 581 (1080)
T KOG0732|consen 553 ----------------------ALEDIQGLMDVASS-----------------MAKIE--EHLK--LLVRS-----F--- 581 (1080)
T ss_pred ----------------------HHHHhhcchhHHhh-----------------hhhHH--HHhH--HHHHh-----h---
Confidence 11111111111000 00000 0000 00000 0
Q ss_pred cCCCCCccCCCCCccccccccchhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhc
Q 001066 1070 AGDSNDDCANSKPSIAHSYGINCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1070 ~~~~~~f~~~~kp~~~~~~~~~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ky 1149 (1167)
...|+ .....+|++|+.|..|.|.++|++||.|.|.| +.++++++++||+.-
T Consensus 582 ---e~~~~------------------------i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~-~~v~s~~issll~d~ 633 (1080)
T KOG0732|consen 582 ---ESNFA------------------------IRLICRPRLLINGGKGSGQDYLGPAILHRLEG-LPVQSLDISSLLSDE 633 (1080)
T ss_pred ---hcccc------------------------hhhhcCcHHhcCCCcccccCcccHHHHHHHhc-cchHHHHHHHHHhcc
Confidence 00011 11224667999999999999999999999975 999999999999988
Q ss_pred -ccchHHHHHHHhhhcc
Q 001066 1150 -RGDLVQGLTLLLSMFS 1165 (1167)
Q Consensus 1150 -iGesE~nvr~iF~~~~ 1165 (1167)
-++.+.+|.+||+++.
T Consensus 634 ~~~~~~~~iv~i~~eaR 650 (1080)
T KOG0732|consen 634 GTEDLEEEIVHIFMEAR 650 (1080)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 9999999999999986
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-44 Score=420.57 Aligned_cols=355 Identities=23% Similarity=0.297 Sum_probs=267.4
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchh
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGK 764 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~ 764 (1167)
+-...+.+.....+..++. |...+. ..++.....+||+|+||||||++++++|.+++ .+++.++|.++...
T Consensus 400 ~~~~~~~~~~~~~l~~vl~-p~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg-----~h~~evdc~el~~~ 470 (953)
T KOG0736|consen 400 SLSPPGLEAKVLELVAVLS-PQKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELG-----LHLLEVDCYELVAE 470 (953)
T ss_pred cCCCccchHHHHHHHHHhC-cccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhC-----CceEeccHHHHhhc
Confidence 3344555555554444332 222221 12334556799999999999999999999999 78999999999999
Q ss_pred hhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhh---cccCCCceEEEccCCCCCcCC
Q 001066 765 YVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMD---GLKSRGSVVVIGATNRPEAVD 841 (1167)
Q Consensus 765 ~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd---~l~~~~~ViVIaTTN~~d~Ld 841 (1167)
..+..+.++..+|..|+.++|+||||-++|.|...... ....++++.+-.+|. .......++||+||+..+.++
T Consensus 471 s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp 547 (953)
T KOG0736|consen 471 SASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLP 547 (953)
T ss_pred ccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCC
Confidence 89999999999999999999999999999999742222 333455655555554 223567899999999999999
Q ss_pred cccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Q 001066 842 PALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEIL 921 (1167)
Q Consensus 842 ~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~ 921 (1167)
+.+++ -|.++|.++.|+.++|.+||++++...... .+..+..+|.++.||+.++|..++..+...+..+-...
T Consensus 548 ~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~---- 620 (953)
T KOG0736|consen 548 ADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNK---- 620 (953)
T ss_pred HHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhh----
Confidence 99998 788899999999999999999999876654 56788999999999999999999887733333221000
Q ss_pred HHHHHHhh---ccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccCCCCCCccccccchhhhhhhhhhhhcc
Q 001066 922 SAAAEKAF---CSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSSPLPSHLIPCLLQPLSTLLVSLYLDER 998 (1167)
Q Consensus 922 ~~~e~~~~---~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~~~iip~v~w~l~~l~~~~~l~E~ 998 (1167)
.-++.. ....+......++++||.+|+.+++. -|+..|+++++|++.|..
T Consensus 621 --~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~-------------~fs~aiGAPKIPnV~WdD------------ 673 (953)
T KOG0736|consen 621 --GLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQK-------------EFSDAIGAPKIPNVSWDD------------ 673 (953)
T ss_pred --cccccchhccccccccccceecHHHHHHHHHHHHH-------------hhhhhcCCCCCCccchhc------------
Confidence 000000 11123344578999999999998863 345678889999999992
Q ss_pred ccCCcchhHHHHHHHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHHHHhhcccccCCcccCCCccccCCCCCccC
Q 001066 999 LWLPPSLTKATKMIQSVIVSALDKKKLLSDHWWSHINDFLEEADIAKEIERRLQYAGIITGEASFSGLDAFAGDSNDDCA 1078 (1167)
Q Consensus 999 l~L~~~~~~~~~~i~~~i~~~l~~~~~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~~~~~~~~~~~~~~~~~~~f~~ 1078 (1167)
.+.++++...++++..+|..|
T Consensus 674 ----------VGGLeevK~eIldTIqlPL~h------------------------------------------------- 694 (953)
T KOG0736|consen 674 ----------VGGLEEVKTEILDTIQLPLKH------------------------------------------------- 694 (953)
T ss_pred ----------ccCHHHHHHHHHHHhcCcccC-------------------------------------------------
Confidence 234555666666665555433
Q ss_pred CCCCccccccccchhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHH
Q 001066 1079 NSKPSIAHSYGINCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLT 1158 (1167)
Q Consensus 1079 ~~kp~~~~~~~~~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr 1158 (1167)
|.+| .+. -.+|+|||||||||||||+||||+|++| +|+|++|||||||||||||||+|||
T Consensus 695 ---peLf-----ssg----------lrkRSGILLYGPPGTGKTLlAKAVATEc--sL~FlSVKGPELLNMYVGqSE~NVR 754 (953)
T KOG0736|consen 695 ---PELF-----SSG----------LRKRSGILLYGPPGTGKTLLAKAVATEC--SLNFLSVKGPELLNMYVGQSEENVR 754 (953)
T ss_pred ---hhhh-----hcc----------ccccceeEEECCCCCchHHHHHHHHhhc--eeeEEeecCHHHHHHHhcchHHHHH
Confidence 3333 221 2247779999999999999999999999 4999999999999999999999999
Q ss_pred HHhhhc
Q 001066 1159 LLLSMF 1164 (1167)
Q Consensus 1159 ~iF~~~ 1164 (1167)
+||+|.
T Consensus 755 ~VFerA 760 (953)
T KOG0736|consen 755 EVFERA 760 (953)
T ss_pred HHHHHh
Confidence 999985
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-42 Score=384.78 Aligned_cols=247 Identities=43% Similarity=0.716 Sum_probs=227.9
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
+.|.++|++|+|+++++++|++.+.+|+.+|++|+.+|+.||++||||||||||||.||+|+|++.. .+|+.+.+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~-----AtFIrvvg 218 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD-----ATFIRVVG 218 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC-----ceEEEecc
Confidence 5677899999999999999999999999999999999999999999999999999999999999987 79999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHH---HHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSV---VSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~v---l~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
+.++.+|+|+....++.+|..|+...|+||||||||.+..++...+......+ +-+||+.||++.+.++|-||++||
T Consensus 219 SElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999998876655554444 455677788999999999999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+++.|||||+|||||++.|+||+|+.+.|.+||+.|.+++... .+.+++.||..+.|++++||+++|.+|.++|++..
T Consensus 299 R~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~- 376 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMFAIRER- 376 (406)
T ss_pred CccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc-
Confidence 9999999999999999999999999999999999999998775 56899999999999999999999999999999864
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSP 954 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~ 954 (1167)
...+++.||.+|+.++.
T Consensus 377 ----------------------R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 377 ----------------------RDEVTMEDFLKAVEKVV 393 (406)
T ss_pred ----------------------cCeecHHHHHHHHHHHH
Confidence 24688999999998763
No 8
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-42 Score=391.34 Aligned_cols=354 Identities=31% Similarity=0.439 Sum_probs=297.6
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
.++|+|+-|.++++++|.+++.+ ++.|..|.++|-..|++|||+||||||||.||||+|.+.+ ++||...++++
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~~sGSEF 373 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFYASGSEF 373 (752)
T ss_pred ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-----CCeEeccccch
Confidence 46799999999999999999877 8999999999999999999999999999999999999987 89999999999
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCC
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVD 841 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld 841 (1167)
-..|+|....+++.+|..|+...||||||||||.+.+++.+.........+++||..||++..+.+|||||+||.|+.||
T Consensus 374 dEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 99999999999999999999999999999999999998887766677889999999999999999999999999999999
Q ss_pred cccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC---hH
Q 001066 842 PALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFP---LQ 918 (1167)
Q Consensus 842 ~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~---~~ 918 (1167)
++|.|||||+..|.+|.|+..-|.+||.+|+.+.... .+.++..||+-|.||+++||.+|+++|+..|...+.. ..
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~ 532 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMK 532 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHH
Confidence 9999999999999999999999999999999987654 4678999999999999999999999999999877633 23
Q ss_pred HHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccc-cCCCCCCccccccchhhhhhhhhhhhc
Q 001066 919 EILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLV-SSPLPSHLIPCLLQPLSTLLVSLYLDE 997 (1167)
Q Consensus 919 di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~-~a~L~~~iip~v~w~l~~l~~~~~l~E 997 (1167)
++..+-...+.. ....+..++.+. +....+++.++++...+ -...|-.+.....+. ..++.+.+|||
T Consensus 533 ~LE~akDrIlMG---~ERks~~i~~ea--------k~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG-~sLG~t~~LPe 600 (752)
T KOG0734|consen 533 HLEFAKDRILMG---PERKSMVIDEEA--------KKITAYHEGGHAIVALYTKGAMPLHKATIMPRG-PSLGHTSQLPE 600 (752)
T ss_pred HHhhhhhheeec---ccccccccChhh--------hhhhhhhccCceEEEeecCCCccccceeeccCC-ccccceeecCc
Confidence 322111110100 000112222211 11234788888876655 223334455555556 56788999999
Q ss_pred cccCCcchhHHHHHHHHHHHhhhhhhhcccc--ccccchhhhHHHHHHHHHHHHHHhhcccc
Q 001066 998 RLWLPPSLTKATKMIQSVIVSALDKKKLLSD--HWWSHINDFLEEADIAKEIERRLQYAGII 1057 (1167)
Q Consensus 998 ~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~~--~~tga~~d~~~~~~i~r~i~~~~~~~gl~ 1057 (1167)
......++.+++..++.+|+|++++..+||+ .+|||-+|+.+++++|+.|.. ..||.
T Consensus 601 ~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt---~fGMS 659 (752)
T KOG0734|consen 601 KDRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVT---KFGMS 659 (752)
T ss_pred cchhhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHH---HcCcc
Confidence 9999999999999999999999999999994 799999999999999999954 44544
No 9
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.8e-41 Score=422.29 Aligned_cols=370 Identities=37% Similarity=0.593 Sum_probs=290.4
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
+..+|++|+|++.+++.+.+++.+|+.+++.|..+++.++.++|||||||||||+||++||+.++ ..|+.+++..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~-----~~~i~i~~~~ 247 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYFISINGPE 247 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC-----CeEEEEecHH
Confidence 45789999999999999999999999999999999999999999999999999999999999986 5788889999
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV 840 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L 840 (1167)
+.+.+.+..+..++.+|..+....|+||||||||.+.+++.........+++..|+.+|+.+...+.++||++||.++.+
T Consensus 248 i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~l 327 (733)
T TIGR01243 248 IMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDAL 327 (733)
T ss_pred HhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhc
Confidence 99999999999999999999999999999999999998765554555678899999999998888899999999999999
Q ss_pred CcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Q 001066 841 DPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEI 920 (1167)
Q Consensus 841 d~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di 920 (1167)
|+++++++||+..|.|+.|+.++|.+||+.+....... .+..+..++..+.||+++||..+++.|+..+++|.+....+
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~ 406 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-EDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKI 406 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999888776543 45678999999999999999999999999998875431111
Q ss_pred HHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccCCCCCCccccccchhhhhhhhhhhhcccc
Q 001066 921 LSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSSPLPSHLIPCLLQPLSTLLVSLYLDERLW 1000 (1167)
Q Consensus 921 ~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~~~iip~v~w~l~~l~~~~~l~E~l~ 1000 (1167)
.... .. ..........++..||..|+..++|+. .++... .+|.+.|....
T Consensus 407 ~~~~-~~---i~~~~~~~~~v~~~df~~Al~~v~ps~-~~~~~~-------------~~~~~~~~di~------------ 456 (733)
T TIGR01243 407 NFEA-EE---IPAEVLKELKVTMKDFMEALKMVEPSA-IREVLV-------------EVPNVRWSDIG------------ 456 (733)
T ss_pred cccc-cc---ccchhcccccccHHHHHHHHhhccccc-cchhhc-------------cccccchhhcc------------
Confidence 0000 00 000112346789999999999888754 222211 13455665111
Q ss_pred CCcchhHHHHHHHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHHHHhhcccccCCcccCCCccccCCCCCccCCC
Q 001066 1001 LPPSLTKATKMIQSVIVSALDKKKLLSDHWWSHINDFLEEADIAKEIERRLQYAGIITGEASFSGLDAFAGDSNDDCANS 1080 (1167)
Q Consensus 1001 L~~~~~~~~~~i~~~i~~~l~~~~~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~~~~~~~~~~~~~~~~~~~f~~~~ 1080 (1167)
++. .++..+...+... +.
T Consensus 457 ------g~~-~~k~~l~~~v~~~---------------------------~~---------------------------- 474 (733)
T TIGR01243 457 ------GLE-EVKQELREAVEWP---------------------------LK---------------------------- 474 (733)
T ss_pred ------cHH-HHHHHHHHHHHhh---------------------------hh----------------------------
Confidence 111 1111111100000 00
Q ss_pred CCccccccccchhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHH
Q 001066 1081 KPSIAHSYGINCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLL 1160 (1167)
Q Consensus 1081 kp~~~~~~~~~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~i 1160 (1167)
.|. ++.+.+..+++ ++|||||||||||+||++||+++ + .+|+++++|+|+++|+|++|++|+++
T Consensus 475 ~~~----------~~~~~g~~~~~----giLL~GppGtGKT~lakalA~e~-~-~~fi~v~~~~l~~~~vGese~~i~~~ 538 (733)
T TIGR01243 475 HPE----------IFEKMGIRPPK----GVLLFGPPGTGKTLLAKAVATES-G-ANFIAVRGPEILSKWVGESEKAIREI 538 (733)
T ss_pred CHH----------HHHhcCCCCCc----eEEEECCCCCCHHHHHHHHHHhc-C-CCEEEEehHHHhhcccCcHHHHHHHH
Confidence 111 12222322333 39999999999999999999999 4 99999999999999999999999999
Q ss_pred hhhc
Q 001066 1161 LSMF 1164 (1167)
Q Consensus 1161 F~~~ 1164 (1167)
|.+.
T Consensus 539 f~~A 542 (733)
T TIGR01243 539 FRKA 542 (733)
T ss_pred HHHH
Confidence 9864
No 10
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-39 Score=382.07 Aligned_cols=344 Identities=31% Similarity=0.468 Sum_probs=283.1
Q ss_pred hhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhh--------hccccChHHHHHhhHHHHHHHhhccCcccCCCCC
Q 001066 605 DQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWL--------ENCGEDEEFLKREGKRLHRDLLRIAPVYIGGSDS 676 (1167)
Q Consensus 605 ~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l--------~~~~~d~~~lk~~~~d~~~aL~~v~p~~~~~~~~ 676 (1167)
+.++..+++.+.+|+-.++..++..+...+..+..+.. +++..-..-......+|-.++.+++..+..+- .
T Consensus 584 ~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~ai-G 662 (953)
T KOG0736|consen 584 DVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAI-G 662 (953)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhc-C
Confidence 55667888999999999999998766544444433221 11111112245677899999998887764322 3
Q ss_pred CCCCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 677 DSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 677 ~~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
...-|.+.|+||+|++++|..|.+-|.+|+.++++|.. |+.+..+||||||||||||.+|+|+|.++. +.|+++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcs-----L~FlSV 736 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECS-----LNFLSV 736 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhce-----eeEEee
Confidence 34466789999999999999999999999999999976 778888999999999999999999999998 899999
Q ss_pred cccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccc--hHHHHHHHHHHhhccc--CCCceEEEc
Q 001066 757 KGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQT--HSSVVSTLLALMDGLK--SRGSVVVIG 832 (1167)
Q Consensus 757 ~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~--~~~vl~~LL~lLd~l~--~~~~ViVIa 832 (1167)
.+++++.+|+|++|+.++.+|+.|+...|||||+||||.|++.|..++++. -.+++++||..||++. +...|+|||
T Consensus 737 KGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViG 816 (953)
T KOG0736|consen 737 KGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIG 816 (953)
T ss_pred cCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEe
Confidence 999999999999999999999999999999999999999999887766543 4799999999999997 566799999
Q ss_pred cCCCCCcCCcccCCCCCcccccccCCC-CHHHHHHHHHHhhccCCCCCChhHHHHHHHHcc-CCcHHHHHHHHHHHHHHH
Q 001066 833 ATNRPEAVDPALRRPGRFDREIYFPLP-SMEDRAAILSLHTERWPKPVTGSLLKWIAARTA-GFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 833 TTN~~d~Ld~aLlrpgRF~~~I~~~~P-~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~-G~s~aDL~~Lv~~A~~~A 910 (1167)
+||+|+.|||+|+|||||+.-+++.++ +.+.+..||+.+.+++.+. .+.++..||+.+. .|||+|+.+||..|++.|
T Consensus 817 ATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLCSdA~l~A 895 (953)
T KOG0736|consen 817 ATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLCSDAMLAA 895 (953)
T ss_pred cCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999877 6677889999999998776 4578899999874 699999999999999999
Q ss_pred HHcCCChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccc
Q 001066 911 LKRNFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREA 962 (1167)
Q Consensus 911 ~~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~ 962 (1167)
++|.+... . .+..........++.|+++||.+++++.+|+.+..+.
T Consensus 896 ikR~i~~i--e----~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL 941 (953)
T KOG0736|consen 896 IKRTIHDI--E----SGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQEL 941 (953)
T ss_pred HHHHHHHh--h----hccccccccCCceEEEEHHHHHHHHHhcCCcccHHHH
Confidence 99865421 1 1111112233456889999999999999998766554
No 11
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-37 Score=375.04 Aligned_cols=352 Identities=30% Similarity=0.449 Sum_probs=292.7
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
...+.|.|++|+++++++|.+++.. +.+|+.|.++|...|+++||+||||||||.||+|+|.+.+ ++|++++++
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS 378 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS 378 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH
Confidence 3447899999999999999999887 9999999999999999999999999999999999999988 999999999
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCc----ccccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTR----QQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~----~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
+++..+.+....+++.+|..|+...|+||||||||.+...+.. .+.......+++|+..||++.....|+|||+||
T Consensus 379 EFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn 458 (774)
T KOG0731|consen 379 EFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN 458 (774)
T ss_pred HHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccC
Confidence 9999999999999999999999999999999999999987741 334455678999999999999888999999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+++.||++|+|||||++.|+++.|+...|.+||..+++......++.++..||.+|.||+++||.++|++|+..|.++..
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999887766778888899999999999999999999999998763
Q ss_pred ---ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccCCCC---C-Cccccccchhhh
Q 001066 916 ---PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSSPLP---S-HLIPCLLQPLST 988 (1167)
Q Consensus 916 ---~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~---~-~iip~v~w~l~~ 988 (1167)
...++..+.+...... ......+..+.. -...++++++++..|+-.... + .++| .. .
T Consensus 539 ~~i~~~~~~~a~~Rvi~G~---~~~~~~~~~~~~--------~~~a~~eagha~~g~~l~~~dpl~kvsIiP----Gq-a 602 (774)
T KOG0731|consen 539 REIGTKDLEYAIERVIAGM---EKKSRVLSLEEK--------KTVAYHEAGHAVVGWLLEHADPLLKVSIIP----GQ-A 602 (774)
T ss_pred CccchhhHHHHHHHHhccc---cccchhcCHhhh--------hhhhhhhccchhhhccccccCcceeEEecc----CC-c
Confidence 3445544443221111 011111111111 124477888888777653332 1 3444 32 6
Q ss_pred hhhhhhhhccccCCcchhHHHHHHHHHHHhhhhhhhccc-cccccchhhhHHHHHHHHHHHHHHhhcccc
Q 001066 989 LLVSLYLDERLWLPPSLTKATKMIQSVIVSALDKKKLLS-DHWWSHINDFLEEADIAKEIERRLQYAGII 1057 (1167)
Q Consensus 989 l~~~~~l~E~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~-~~~tga~~d~~~~~~i~r~i~~~~~~~gl~ 1057 (1167)
++++.|+|.+. .-.+...+.+.|...+++|.++..+|+ ..+|||++|+.+.+.||+++. ...||.
T Consensus 603 lG~a~~~P~~~-~l~sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~A~~~V---~~~Gms 668 (774)
T KOG0731|consen 603 LGYAQYLPTDD-YLLSKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKIARAMV---ASFGMS 668 (774)
T ss_pred cceEEECCccc-ccccHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHHHHHHH---HHcCcc
Confidence 78899999887 444566888999999999999999997 699999999999999999984 455655
No 12
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-37 Score=362.54 Aligned_cols=344 Identities=22% Similarity=0.273 Sum_probs=257.1
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhh
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYV 766 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~ 766 (1167)
+++-...+++...+....| +..+.+|||+||+|+|||.||++|+.++.. ...+++..++|..+-+..+
T Consensus 409 d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k-~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSK-DLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred ceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhcc-ccceEEEEEechhccchhH
Confidence 4455555555555433332 344568999999999999999999999873 3446667778888888878
Q ss_pred chHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc--cccchHHHHHHHH-HHhhccc-CCCceEEEccCCCCCcCCc
Q 001066 767 GDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ--QDQTHSSVVSTLL-ALMDGLK-SRGSVVVIGATNRPEAVDP 842 (1167)
Q Consensus 767 g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~--~~~~~~~vl~~LL-~lLd~l~-~~~~ViVIaTTN~~d~Ld~ 842 (1167)
..+.+.+..+|..+.+++|+||+||++|.|++..... +.......+..++ +.++.+. .+..+.||||.+....+++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 8899999999999999999999999999998733222 2223344444555 4444443 3445799999999999999
Q ss_pred ccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Q 001066 843 ALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILS 922 (1167)
Q Consensus 843 aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~ 922 (1167)
.|.++++|..++.+|.|...+|.+||+..+.+........+|..++..|.||...||..++.+|...|+...+.
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris------ 630 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS------ 630 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999887655555667888999999999999999999999988743221
Q ss_pred HHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccCCCCCCccccccchhhhhhhhhhhhccccCC
Q 001066 923 AAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSSPLPSHLIPCLLQPLSTLLVSLYLDERLWLP 1002 (1167)
Q Consensus 923 ~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~~~iip~v~w~l~~l~~~~~l~E~l~L~ 1002 (1167)
..+. .++..+|.+++..+.|.+ .|.+... .-..+.|...
T Consensus 631 ------------~~~k-lltke~f~ksL~~F~P~a-LR~ik~~------------k~tgi~w~di--------------- 669 (952)
T KOG0735|consen 631 ------------NGPK-LLTKELFEKSLKDFVPLA-LRGIKLV------------KSTGIRWEDI--------------- 669 (952)
T ss_pred ------------cCcc-cchHHHHHHHHHhcChHH-hhhcccc------------ccCCCCceec---------------
Confidence 1122 788999999999987644 4433211 1112445511
Q ss_pred cchhHHHHHHHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHHHHhhcccccCCcccCCCccccCCCCCccCCCCC
Q 001066 1003 PSLTKATKMIQSVIVSALDKKKLLSDHWWSHINDFLEEADIAKEIERRLQYAGIITGEASFSGLDAFAGDSNDDCANSKP 1082 (1167)
Q Consensus 1003 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~~~~~~~~~~~~~~~~~~~f~~~~kp 1082 (1167)
+.+..+.+.+.++| .. .+.+|
T Consensus 670 gg~~~~k~~l~~~i----~~-------------------------------------------------------P~kyp 690 (952)
T KOG0735|consen 670 GGLFEAKKVLEEVI----EW-------------------------------------------------------PSKYP 690 (952)
T ss_pred ccHHHHHHHHHHHH----hc-------------------------------------------------------cccch
Confidence 11222222222221 11 01168
Q ss_pred ccccccccchhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhh
Q 001066 1083 SIAHSYGINCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLS 1162 (1167)
Q Consensus 1083 ~~~~~~~~~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~ 1162 (1167)
.||+ .+++..+.| ||||||||||||+||.|+|.++ +++||+|||||||+||||.||+|||.||.
T Consensus 691 ~if~----~~plr~~~g----------iLLyGppGcGKT~la~a~a~~~--~~~fisvKGPElL~KyIGaSEq~vR~lF~ 754 (952)
T KOG0735|consen 691 QIFA----NCPLRLRTG----------ILLYGPPGCGKTLLASAIASNS--NLRFISVKGPELLSKYIGASEQNVRDLFE 754 (952)
T ss_pred HHHh----hCCcccccc----------eEEECCCCCcHHHHHHHHHhhC--CeeEEEecCHHHHHHHhcccHHHHHHHHH
Confidence 8886 666666655 9999999999999999999999 59999999999999999999999999998
Q ss_pred hc
Q 001066 1163 MF 1164 (1167)
Q Consensus 1163 ~~ 1164 (1167)
+.
T Consensus 755 rA 756 (952)
T KOG0735|consen 755 RA 756 (952)
T ss_pred Hh
Confidence 75
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-37 Score=346.63 Aligned_cols=272 Identities=35% Similarity=0.585 Sum_probs=234.7
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
.+.|+||.|+.++|+-|+++|.+|+..|++|..+ +.|.++||++||||||||+||+|||.+++ .+||.+..+.+
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNVSsstl 281 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNVSSSTL 281 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEechhhh
Confidence 4789999999999999999999999999999965 46779999999999999999999999998 79999999999
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc-cccchHHHHHHHHHHhhcccCC----CceEEEccCCC
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ-QDQTHSSVVSTLLALMDGLKSR----GSVVVIGATNR 836 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~-~~~~~~~vl~~LL~lLd~l~~~----~~ViVIaTTN~ 836 (1167)
.++|.|++++.++.+|+.|+.+.|++|||||||.|+.++... .+..+.++.+.||.+||++... ..|+|+|+||.
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCC
Confidence 999999999999999999999999999999999999876554 4556778999999999997432 23889999999
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFP 916 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~ 916 (1167)
||+||.+|+| ||...|+||+|+.+.|..+|+..++..... ++..+..||..+.||+++||.++|+.|.+.+++|.+.
T Consensus 362 PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 362 PWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELD-DPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred CcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCC-CCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999876654 6688999999999999999999999999999998533
Q ss_pred ---hHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccc--ccccccccc
Q 001066 917 ---LQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREA--GIAAHDLVS 971 (1167)
Q Consensus 917 ---~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~--~~a~~d~~~ 971 (1167)
...+... .......+++..||..|+.+++|+++..++ ...|.+.||
T Consensus 439 g~~~~ei~~l---------akE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efG 489 (491)
T KOG0738|consen 439 GLTPREIRQL---------AKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFG 489 (491)
T ss_pred cCCcHHhhhh---------hhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhc
Confidence 3333211 111223679999999999999998874443 345555555
No 14
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=353.62 Aligned_cols=350 Identities=33% Similarity=0.490 Sum_probs=292.8
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
...++|.|+.|.++.++.+.++|.. +..|..|..+|...|+++||+||||||||+||+++|.+.+ ++|+.++++
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~-----VPFf~iSGS 217 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-----VPFFSISGS 217 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC-----CCceeccch
Confidence 4568899999999999999999876 8999999999999999999999999999999999999887 899999999
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
+++..|+|-...+++.+|..|++..||||||||||.+...+... +.......+++||..||++..+..|+||++||+
T Consensus 218 ~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNR 297 (596)
T COG0465 218 DFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNR 297 (596)
T ss_pred hhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCC
Confidence 99999999999999999999999999999999999998766422 333345689999999999998889999999999
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC-
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF- 915 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i- 915 (1167)
|+-+|++|+|||||++.|.++.|+...|.+||+.++...... .+.++..||+.|.||+++||.+++++|+..|.+++.
T Consensus 298 pdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 298 PDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred cccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 999999999999999999999999999999999998887665 567888899999999999999999999999998863
Q ss_pred --ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccCCC-CCCccccccchhhhhhhh
Q 001066 916 --PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSSPL-PSHLIPCLLQPLSTLLVS 992 (1167)
Q Consensus 916 --~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L-~~~iip~v~w~l~~l~~~ 992 (1167)
...++..+...-..... . .+..+++.+ ++ ..++++.++++...+-..- +-.++..+.+. ..++++
T Consensus 377 ~i~~~~i~ea~drv~~G~e-r--ks~vise~e-----k~---~~AYhEaghalv~~~l~~~d~v~KvtIiPrG-~alG~t 444 (596)
T COG0465 377 EITMRDIEEAIDRVIAGPE-R--KSRVISEAE-----KK---ITAYHEAGHALVGLLLPDADPVHKVTIIPRG-RALGYT 444 (596)
T ss_pred eEeccchHHHHHHHhcCcC-c--CCcccChhh-----hc---chHHHHHHHHHHHHhCCCCcccceeeeccCc-hhhcch
Confidence 33444433332222111 1 111222211 11 1336666666554442221 23666667777 778999
Q ss_pred hhhhccccCCcchhHHHHHHHHHHHhhhhhhhccc-cccccchhhhHHHHHHHHHHH
Q 001066 993 LYLDERLWLPPSLTKATKMIQSVIVSALDKKKLLS-DHWWSHINDFLEEADIAKEIE 1048 (1167)
Q Consensus 993 ~~l~E~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~-~~~tga~~d~~~~~~i~r~i~ 1048 (1167)
.++||+.+...+...+.+.|...++|+.+...+++ ..+|||.+|+.+++.++|.|.
T Consensus 445 ~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D~~~at~~ar~mV 501 (596)
T COG0465 445 LFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDLARAMV 501 (596)
T ss_pred hcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcccccccchhhHHHHHHHHHHhh
Confidence 99999988888888999999999999999999999 999999999999999999984
No 15
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=325.89 Aligned_cols=276 Identities=32% Similarity=0.552 Sum_probs=237.7
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
++|.+.|+|+.|++.+++.|++++++|+.+|++|.. ...|.++|||||||||||++||+|+|.+.+ ..||+++.
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAn-----STFFSvSS 199 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSS 199 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcC-----CceEEeeh
Confidence 566789999999999999999999999999999985 346779999999999999999999999887 68999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc-cCCCceEEEccCCCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL-KSRGSVVVIGATNRP 837 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l-~~~~~ViVIaTTN~~ 837 (1167)
++++++|+|++++.++++|+.|+.+.|+||||||||.+++++..+.+..+.++...||..|+++ ....+|+|+|+||-|
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 9999999999999999999999999999999999999999999998889999999999999998 445689999999999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCh
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPL 917 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~ 917 (1167)
|.||.+++| ||...|+||+|....|..+|+.++...+..+++.++..|+..|.||+++||.-+++.|.+.-+++-.+.
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsA 357 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSA 357 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhh
Confidence 999999999 999999999999999999999999999999999999999999999999999999999888777653221
Q ss_pred HHHHH-----------------------HHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccc
Q 001066 918 QEILS-----------------------AAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREA 962 (1167)
Q Consensus 918 ~di~~-----------------------~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~ 962 (1167)
..+.. +.+-.+.......+-...+++.||+.+|++.+|.+..++.
T Consensus 358 thFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl 425 (439)
T KOG0739|consen 358 THFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDL 425 (439)
T ss_pred hhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHH
Confidence 11110 0111111111122223568999999999999987755543
No 16
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=4.5e-35 Score=367.65 Aligned_cols=349 Identities=34% Similarity=0.527 Sum_probs=286.5
Q ss_pred ccCcchhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhh----ccc---cChHHHHHhhHHHHHHHhhccCcccC
Q 001066 600 FQPYGDQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLE----NCG---EDEEFLKREGKRLHRDLLRIAPVYIG 672 (1167)
Q Consensus 600 fqp~g~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~----~~~---~d~~~lk~~~~d~~~aL~~v~p~~~~ 672 (1167)
+....+..+..++..+.+|+++++..+++.|+..++.+...... ... .-...+.++..+|..++..+.|....
T Consensus 362 ~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~ 441 (733)
T TIGR01243 362 MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIR 441 (733)
T ss_pred CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccc
Confidence 33344667889999999999999999999999888876433111 000 01123467789999999999988643
Q ss_pred CCCCCCCCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceE
Q 001066 673 GSDSDSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIA 752 (1167)
Q Consensus 673 ~~~~~~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~ 752 (1167)
.. ....+..+|++|+|++.+++.|.+.+.+|+.+++.|..+++.++.++|||||||||||++|+++|.+++ .+
T Consensus 442 ~~--~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~-----~~ 514 (733)
T TIGR01243 442 EV--LVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG-----AN 514 (733)
T ss_pred hh--hccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CC
Confidence 32 233456799999999999999999999999999999999999999999999999999999999999987 68
Q ss_pred EEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccc-ccchHHHHHHHHHHhhcccCCCceEEE
Q 001066 753 YFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ-DQTHSSVVSTLLALMDGLKSRGSVVVI 831 (1167)
Q Consensus 753 ~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~-~~~~~~vl~~LL~lLd~l~~~~~ViVI 831 (1167)
|+.+.+++++++|+|+.+..++.+|..|+...|+||||||||.|.+.+.... .....+++++|+..|+++....+++||
T Consensus 515 fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 515 FIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred EEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 9999999999999999999999999999999999999999999987665332 234568899999999998888899999
Q ss_pred ccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 001066 832 GATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 832 aTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~ 911 (1167)
+|||+++.||++++|||||+..|+||+|+.++|.+||+.++...... .+.++..||..|.||+++||.++|++|+..|+
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~ 673 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAAMAAL 673 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776543 45679999999999999999999999999998
Q ss_pred HcCCChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCccc
Q 001066 912 KRNFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKRE 961 (1167)
Q Consensus 912 ~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re 961 (1167)
++.+...... ..............++..||..|+.+++|+.+..+
T Consensus 674 ~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~ 718 (733)
T TIGR01243 674 RESIGSPAKE-----KLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKED 718 (733)
T ss_pred HHHhhhccch-----hhhcccccccccCcccHHHHHHHHHHcCCCCCHHH
Confidence 8753311000 00000001123467999999999999998776543
No 17
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-34 Score=348.75 Aligned_cols=317 Identities=35% Similarity=0.556 Sum_probs=282.8
Q ss_pred hhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhhccccChHHHHHhhHHHHHHHhhccCcccCCCCCCCCCcccC
Q 001066 605 DQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLENCGEDEEFLKREGKRLHRDLLRIAPVYIGGSDSDSGKLFEG 684 (1167)
Q Consensus 605 ~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~~~~~d~~~lk~~~~d~~~aL~~v~p~~~~~~~~~~~~~~~~ 684 (1167)
+..+..++..+.++.++++..+++.+...++.+.. ......+.....+|..+|.++.|. .......+.++
T Consensus 171 ~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~v~ 240 (494)
T COG0464 171 PGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------DLVGEYIGVTEDDFEEALKKVLPS----RGVLFEDEDVT 240 (494)
T ss_pred cccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------ccCcccccccHHHHHHHHHhcCcc----cccccCCCCcc
Confidence 67888899999999999999999999888877753 222335677888999999999886 22334556689
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchh
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGK 764 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~ 764 (1167)
|++++|++.+++.+++.+.+|+.+++.|...++.++.++|||||||||||+||+++|.+++ .+|+.+..++++++
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~-----~~fi~v~~~~l~sk 315 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR-----SRFISVKGSELLSK 315 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC-----CeEEEeeCHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999887 79999999999999
Q ss_pred hhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCccc
Q 001066 765 YVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPAL 844 (1167)
Q Consensus 765 ~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aL 844 (1167)
|+|++++.++.+|..|+...|+||||||||.+.+.++...+....+++++|+..|+++....+|+||+|||+++.+|+++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 99999999999999999999999999999999987776665555799999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHHhhccCCCC-CChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 001066 845 RRPGRFDREIYFPLPSMEDRAAILSLHTERWPKP-VTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSA 923 (1167)
Q Consensus 845 lrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~-l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~ 923 (1167)
+|+|||+..|+||+|+..+|.+||+.++...... ..+.++..++..+.||+++||..+|+.|.+.+.++..
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------- 467 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-------- 467 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--------
Confidence 9999999999999999999999999999865553 4578999999999999999999999999999887653
Q ss_pred HHHHhhccccccCCccccCHHHHHHHhhcCCCCCC
Q 001066 924 AAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCS 958 (1167)
Q Consensus 924 ~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S 958 (1167)
...++..||..|++.++|+.+
T Consensus 468 --------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 468 --------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred --------------cCCccHHHHHHHHHhcCCCCC
Confidence 246889999999999887654
No 18
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=339.69 Aligned_cols=307 Identities=30% Similarity=0.490 Sum_probs=263.6
Q ss_pred eccccccccccCcchhHHHHHHHHHHhhhHHHHHHhhHHHHHhhh-hhhhhhhhccccChHHHHHhhHHHHHHHhhccCc
Q 001066 591 IACTDHRHLFQPYGDQYLARIKKLKARKMKMEIRKLSNDAWRKDM-EAEEKWLENCGEDEEFLKREGKRLHRDLLRIAPV 669 (1167)
Q Consensus 591 ~~C~~Hr~~fqp~g~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i-~r~~~~l~~~~~d~~~lk~~~~d~~~aL~~v~p~ 669 (1167)
+.|....+.+--.-..++..+...|.+|..-++.-++.-|-..++ +++.+.. . ..+..+|.++|....|.
T Consensus 581 IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~-------k--lltke~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 581 ILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGP-------K--LLTKELFEKSLKDFVPL 651 (952)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCc-------c--cchHHHHHHHHHhcChH
Confidence 344444444444445566778999999999999888866544443 2322211 1 33557888888888887
Q ss_pred ccCCCCCCCCCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC
Q 001066 670 YIGGSDSDSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK 749 (1167)
Q Consensus 670 ~~~~~~~~~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~ 749 (1167)
..++...-... ..+|++|+|+.++++.|.+.+.+|.+||.+|.+.+++.+.+||||||||||||+||.++|..+.
T Consensus 652 aLR~ik~~k~t-gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~---- 726 (952)
T KOG0735|consen 652 ALRGIKLVKST-GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN---- 726 (952)
T ss_pred HhhhccccccC-CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC----
Confidence 66555333322 2689999999999999999999999999999999999999999999999999999999999887
Q ss_pred ceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceE
Q 001066 750 RIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVV 829 (1167)
Q Consensus 750 ~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~Vi 829 (1167)
+.|+++.+++++++|+|.++..++.+|..|+...|||||+||+|.+++++.........+++++||..|++...-.+|.
T Consensus 727 -~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~ 805 (952)
T KOG0735|consen 727 -LRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVY 805 (952)
T ss_pred -eeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEE
Confidence 8999999999999999999999999999999999999999999999999887777778899999999999999889999
Q ss_pred EEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001066 830 VIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 830 VIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~ 909 (1167)
|+|+|.+|+.+||||+||||+++.++-+.|+..+|++||+.+....... ++.+++.+|..|+||+++||+.|+..|.++
T Consensus 806 i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~l~ 884 (952)
T KOG0735|consen 806 ILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQLA 884 (952)
T ss_pred EEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876554 678999999999999999999999999988
Q ss_pred HHHc
Q 001066 910 ALKR 913 (1167)
Q Consensus 910 A~~R 913 (1167)
|..+
T Consensus 885 avh~ 888 (952)
T KOG0735|consen 885 AVHE 888 (952)
T ss_pred HHHH
Confidence 8764
No 19
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=298.87 Aligned_cols=244 Identities=39% Similarity=0.651 Sum_probs=220.0
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
|..+++-++|++.+++.+++.+.+|..+|++|+.+|+..|.++|||||||||||.||+++|+... ..|+.+++++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-----c~firvsgse 216 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFIRVSGSE 216 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-----eEEEEechHH
Confidence 34568889999999999999999999999999999999999999999999999999999999876 7899999999
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHH---HHHHHhhcccCCCceEEEccCCCC
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVS---TLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~---~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
++.+|+|+....++.+|-.|+.+.|+|||+||||.+..++...+....+.++. .|++.|+++....++-||.+||+.
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri 296 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI 296 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc
Confidence 99999999999999999999999999999999999998776654444445544 566777888888999999999999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCh
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPL 917 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~ 917 (1167)
+-||++|+||||+++.|+||+|+.+.|.+||+.+.+++.+. ...++..+|....|.++++++.+|.+|.++|++..
T Consensus 297 dild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteagm~alrer--- 372 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER--- 372 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh---
Confidence 99999999999999999999999999999999999887654 45789999999999999999999999999998742
Q ss_pred HHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 918 QEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 918 ~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
.+.+|++||.-|+.++
T Consensus 373 --------------------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 --------------------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred --------------------hccccHHHHHHHHHHH
Confidence 3678999999988765
No 20
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.8e-33 Score=337.15 Aligned_cols=350 Identities=32% Similarity=0.479 Sum_probs=271.2
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+..+|++|+|++++++++.+++.. +.+++.|..++..+++++||+||||||||++|++||.+++ ++|+.+++.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~-----~~~~~i~~~ 122 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG-----VPFFSISGS 122 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCeeeccHH
Confidence 4567999999999999999998876 7889999999999999999999999999999999999886 688899999
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
.+...+.+.....++.+|..++...|+||||||||.+..++... .......+++.|+..|+.+....+++||+|||+
T Consensus 123 ~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~ 202 (495)
T TIGR01241 123 DFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNR 202 (495)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCC
Confidence 88888999999999999999999999999999999998765432 223345788899999999888888999999999
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC--
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN-- 914 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~-- 914 (1167)
++.||++|+||+||+..|+|+.|+.++|.+||+.++...... .+.++..+|..+.||+++||.+++++|+..|.+++
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~ 281 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKT 281 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999998876543 45678999999999999999999999988887654
Q ss_pred -CChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccC-CCCCCccccccchhhhhhhh
Q 001066 915 -FPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSS-PLPSHLIPCLLQPLSTLLVS 992 (1167)
Q Consensus 915 -i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a-~L~~~iip~v~w~l~~l~~~ 992 (1167)
+...++..+......... .....++..+... ...+++++++..+.-. ..+-..+....|.. .++.+
T Consensus 282 ~i~~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~--------~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~-~~G~~ 349 (495)
T TIGR01241 282 EITMNDIEEAIDRVIAGPE---KKSRVISEKEKKL--------VAYHEAGHALVGLLLKDADPVHKVTIIPRGQ-ALGYT 349 (495)
T ss_pred CCCHHHHHHHHHHHhcccc---cccccccHHHHHH--------HHHHHHhHHHHHHhcCCCCceEEEEEeecCC-ccceE
Confidence 333444333222111100 0011111111110 1134555554332211 11112233333432 34555
Q ss_pred hhhhccccCCcchhHHHHHHHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHH
Q 001066 993 LYLDERLWLPPSLTKATKMIQSVIVSALDKKKLLSDHWWSHINDFLEEADIAKEIE 1048 (1167)
Q Consensus 993 ~~l~E~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~~~~tga~~d~~~~~~i~r~i~ 1048 (1167)
.+.++......+...+...|...+.|++++..+++.+++|+.+|+.+++.+++.|.
T Consensus 350 ~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~Dl~~At~lA~~mv 405 (495)
T TIGR01241 350 QFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNIARAMV 405 (495)
T ss_pred EecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH
Confidence 55665544556677889999999999999999999999999999999999999984
No 21
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=3.5e-33 Score=341.63 Aligned_cols=353 Identities=29% Similarity=0.430 Sum_probs=277.7
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..+|++|+|++++++.+.+++.. +..++.|..++...++++||+||||||||++|+++|.+++ ++|+.+++..+
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~-----~p~i~is~s~f 252 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE-----VPFFSISGSEF 252 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeeeccHHHH
Confidence 46899999999999999998766 7888899999999999999999999999999999999886 68899999888
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCc---ccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTR---QQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE 838 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~---~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d 838 (1167)
...+.+.....++.+|..|+...|+||||||||.+...+.. ........++..|+..|+++....+++||+|||+++
T Consensus 253 ~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~ 332 (638)
T CHL00176 253 VEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVD 332 (638)
T ss_pred HHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchH
Confidence 88888888888999999999999999999999999865432 223334567888888999888788899999999999
Q ss_pred cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC---
Q 001066 839 AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF--- 915 (1167)
Q Consensus 839 ~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i--- 915 (1167)
.+|++|+|||||+..|.|+.|+.++|.+||+.++..... ..+.++..||..+.||+++||.+++++|+..|.+++.
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~I 411 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATI 411 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999987433 3567899999999999999999999999988877653
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccCCCC-CCccccccchhhhhhhhhh
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSSPLP-SHLIPCLLQPLSTLLVSLY 994 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~-~~iip~v~w~l~~l~~~~~ 994 (1167)
...++..+........... .+........ ..++++++++..+.-.+-. -.++..+.+. ..++.+.+
T Consensus 412 t~~dl~~Ai~rv~~g~~~~-----~~~~~~~~~~-------vA~hEaGhA~v~~~l~~~~~v~kvtI~prg-~~~G~~~~ 478 (638)
T CHL00176 412 TMKEIDTAIDRVIAGLEGT-----PLEDSKNKRL-------IAYHEVGHAIVGTLLPNHDPVQKVTLIPRG-QAKGLTWF 478 (638)
T ss_pred CHHHHHHHHHHHHhhhccC-----ccccHHHHHH-------HHHHhhhhHHHHhhccCCCceEEEEEeecC-CCCCceEe
Confidence 3444444332221111000 1111111111 1256777776554422211 1233333333 34577888
Q ss_pred hhccccCCcchhHHHHHHHHHHHhhhhhhhccc--cccccchhhhHHHHHHHHHHHHHHhhcccc
Q 001066 995 LDERLWLPPSLTKATKMIQSVIVSALDKKKLLS--DHWWSHINDFLEEADIAKEIERRLQYAGII 1057 (1167)
Q Consensus 995 l~E~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~--~~~tga~~d~~~~~~i~r~i~~~~~~~gl~ 1057 (1167)
.|++.....+...++..|...++|++++..+++ ..+||+.+|+.+++.+++.| +...||.
T Consensus 479 ~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~m---v~~~Gm~ 540 (638)
T CHL00176 479 TPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQM---VTRFGMS 540 (638)
T ss_pred cCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHH---HHHhCCC
Confidence 887766777888899999999999999999998 47999999999999999999 4455654
No 22
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=299.44 Aligned_cols=232 Identities=37% Similarity=0.627 Sum_probs=212.7
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
++|..+++||+|++.+++.|.+++.+|+.+++.|.++|+.+|.++|+|||||||||.+|++.|.... ..|+.+.+
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~-----aTFLKLAg 238 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN-----ATFLKLAG 238 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc-----chHHHhcc
Confidence 5677889999999999999999999999999999999999999999999999999999999998876 67888899
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchH---HHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHS---SVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~---~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
+.++..|+|+..+.++..|..|+...|+||||||+|.+..++..+...... +..-.||+.|+++.+...|-||++||
T Consensus 239 PQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATN 318 (424)
T KOG0652|consen 239 PQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATN 318 (424)
T ss_pred hHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecc
Confidence 999999999999999999999999999999999999999877665433333 44455677788899999999999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+.+-|||+|+|.||+++.|+||.|+.+.|..|++.+.+++... ++..++.||+.|.+|++++.+++|-+|.+.|++|+.
T Consensus 319 RvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a 397 (424)
T KOG0652|consen 319 RVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA 397 (424)
T ss_pred cccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeehhhhHHHHhccc
Confidence 9999999999999999999999999999999999999998765 668899999999999999999999999999999874
Q ss_pred C
Q 001066 916 P 916 (1167)
Q Consensus 916 ~ 916 (1167)
+
T Consensus 398 t 398 (424)
T KOG0652|consen 398 T 398 (424)
T ss_pred c
Confidence 3
No 23
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-33 Score=294.67 Aligned_cols=248 Identities=36% Similarity=0.619 Sum_probs=223.8
Q ss_pred CCCCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 677 DSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 677 ~~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
..++|.+++.||+|++-+++++++.+.+|+.+.++|++.|+.||++||||||||||||+||+++|+... ..|+.+
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~-----a~firv 220 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----AAFIRV 220 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc-----hheeee
Confidence 346788899999999999999999999999999999999999999999999999999999999999876 689999
Q ss_pred cccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccc---ccchHHHHHHHHHHhhcccCCCceEEEcc
Q 001066 757 KGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ---DQTHSSVVSTLLALMDGLKSRGSVVVIGA 833 (1167)
Q Consensus 757 ~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~---~~~~~~vl~~LL~lLd~l~~~~~ViVIaT 833 (1167)
.+++++.+|.|+....++.+|+.|+.+.|+||||||||.+..++-..+ +..-.+++-.|++.|+++....++-||++
T Consensus 221 vgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvima 300 (408)
T KOG0727|consen 221 VGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMA 300 (408)
T ss_pred ccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEe
Confidence 999999999999999999999999999999999999999987764433 44456777888999999998899999999
Q ss_pred CCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 001066 834 TNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR 913 (1167)
Q Consensus 834 TN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R 913 (1167)
||+.+.|||+|+||||+++.|+||.|+..+++-+|..+..++.+. ++.+++.+..+....++++|.++|++|.+.|.+.
T Consensus 301 tnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 301 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQEAGMLAVRE 379 (408)
T ss_pred cCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHHHhHHHHHh
Confidence 999999999999999999999999999999999999999988765 5678999999999999999999999999999876
Q ss_pred CCChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 914 NFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 914 ~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
+ ...+...||.+|.+..
T Consensus 380 n-----------------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 380 N-----------------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred c-----------------------ceeeeHHHHHHHHHhh
Confidence 4 1345677888877643
No 24
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-33 Score=301.63 Aligned_cols=246 Identities=38% Similarity=0.670 Sum_probs=217.4
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..|..+|.||+|++.+++.|++.+.+|+.+|+.|+.+|+.+|.+|+|||+||||||.||+|+|+... ..|+.+.+
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS-----ATFlRvvG 252 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS-----ATFLRVVG 252 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc-----hhhhhhhh
Confidence 3456789999999999999999999999999999999999999999999999999999999999876 68888999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHH---HHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVS---TLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~---~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
++++.+|.|+....++.+|+.|..+.|+|+||||||.+..++-...+.....++. .||+.|+++.+++.|-||.+||
T Consensus 253 seLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATn 332 (440)
T KOG0726|consen 253 SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN 332 (440)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecc
Confidence 9999999999999999999999999999999999999988765544444444444 5667778888999999999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+.+.|||+|.||||+++.|.||.|+...+..||+.+...+.+. .+..++.+...-..++++||+++|.+|.+.|++..
T Consensus 333 rie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-~dVnle~li~~kddlSGAdIkAictEaGllAlRer- 410 (440)
T KOG0726|consen 333 RIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-EDVNLEELIMTKDDLSGADIKAICTEAGLLALRER- 410 (440)
T ss_pred cccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-ccccHHHHhhcccccccccHHHHHHHHhHHHHHHH-
Confidence 9999999999999999999999999999999999999887654 45778888888888999999999999999998743
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
...++..||.+|..++
T Consensus 411 ----------------------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 ----------------------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred ----------------------HhhccHHHHHHHHHHH
Confidence 1346778888877654
No 25
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.8e-32 Score=315.84 Aligned_cols=246 Identities=35% Similarity=0.602 Sum_probs=219.0
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..|..+|++|+|++.+++.|.+.+.+|+.+++.|..+|+.+++++|||||||||||++|+++|+.++ .+|+.+.+
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-----~~fi~i~~ 212 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-----ATFIRVVG 212 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEeh
Confidence 5677899999999999999999999999999999999999999999999999999999999999886 57788888
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccc---ccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ---DQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~---~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
..+..+|.+..+..++.+|..|+...|+||||||||.+..++.... +....+++..|+..|+++....+++||+|||
T Consensus 213 s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN 292 (398)
T PTZ00454 213 SEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN 292 (398)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 8888999999999999999999999999999999999987553222 2234467778888888887778899999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+++.+|++++|+|||+..|+|+.|+.++|..||+.++..+... .+.++..++..+.||+++||.++|++|.+.|++++.
T Consensus 293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~ 371 (398)
T PTZ00454 293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR 371 (398)
T ss_pred CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999887654 457889999999999999999999999999987652
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
..|+..||.+|+.++
T Consensus 372 -----------------------~~i~~~df~~A~~~v 386 (398)
T PTZ00454 372 -----------------------YVILPKDFEKGYKTV 386 (398)
T ss_pred -----------------------CccCHHHHHHHHHHH
Confidence 357888999998865
No 26
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.3e-32 Score=302.15 Aligned_cols=270 Identities=32% Similarity=0.525 Sum_probs=226.9
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccC-CCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLG-LTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lg-l~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
...++|+||+|++.+++.+++.+.+|+.+|++|...+ +.++.+|||+||||||||.+|+++|.+.+ ..|+.+..
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag-----a~fInv~~ 160 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG-----ANFINVSV 160 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC-----CCcceeec
Confidence 4457899999999999999999999999999997554 46789999999999999999999999998 68889999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCc--eEEEccCCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGS--VVVIGATNR 836 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~--ViVIaTTN~ 836 (1167)
+.+.++|+|+.++.++.+|..|.+.+|+||||||+|.+.+.+...++.....+..+|+.+.+++.++.+ |+|+|+||+
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 999999999999999999999999999999999999999888666667777888899999999977665 999999999
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFP 916 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~ 916 (1167)
|..||.+++| |+.+.++|+.|+..+|.+||+.++...... ++.++..+|..|.||+++||.++|..|+...++.-+.
T Consensus 241 P~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 241 PFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred CccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999999 999999999999999999999999987665 6689999999999999999999999999988765432
Q ss_pred hH----HHHHHHHHHhhc-cccccCCccccCHHHHHHHhhcCCCCC
Q 001066 917 LQ----EILSAAAEKAFC-SKRVTLPSFAVEERDWLEALSCSPPPC 957 (1167)
Q Consensus 917 ~~----di~~~~e~~~~~-~~~~~l~~i~It~~D~~~AL~~~~P~~ 957 (1167)
.. +........... .........+++++||..|+..+-+++
T Consensus 318 ~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~ 363 (386)
T KOG0737|consen 318 SETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASV 363 (386)
T ss_pred hcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHH
Confidence 21 111111000000 000111246789999999998665443
No 27
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=8.7e-32 Score=307.30 Aligned_cols=259 Identities=34% Similarity=0.547 Sum_probs=217.2
Q ss_pred cccChHHHHH-HHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh
Q 001066 687 SVAGLQDVIR-CMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY 765 (1167)
Q Consensus 687 dL~Gle~~k~-~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~ 765 (1167)
.|+|++.... -++++...-+..|++.+++|+..-+++|||||||||||.+||.|...+......+ ++++.++.+|
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKI----VNGPeIL~KY 297 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKI----VNGPEILNKY 297 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcc----cCcHHHHHHh
Confidence 3578876544 4455666667789999999999999999999999999999999999988655443 6899999999
Q ss_pred hchHHHHHHHHHHHHHh--------cCCcEEEEcCCCCcCcccCcccc--cchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 766 VGDAERQLRLLFQVAEK--------CQPSIIFFDEIDGLAPCRTRQQD--QTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 766 ~g~~e~~L~~lF~~A~~--------~~psILfIDEID~L~~~~~~~~~--~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
+|+++..++.+|..|.. +.--||++||||.++..+....+ .....++++||.-||++..-.+|+|||-||
T Consensus 298 VGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTN 377 (744)
T KOG0741|consen 298 VGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTN 377 (744)
T ss_pred hcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccC
Confidence 99999999999998864 23459999999999987665433 456899999999999999889999999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccC---CCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW---PKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALK 912 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~---~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~ 912 (1167)
+.+.+|.||+|||||...+++.+|+..-|++||+.+..++ ..--++.+++.||.+|..|++++|..|++.|...|+.
T Consensus 378 R~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~n 457 (744)
T KOG0741|consen 378 RKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMN 457 (744)
T ss_pred chhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764 3334678999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCC
Q 001066 913 RNFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPC 957 (1167)
Q Consensus 913 R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~ 957 (1167)
|.+.... .........+.+.|+..||..||..++|..
T Consensus 458 R~vk~~~--------~~~~~~~~~e~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 458 RHVKAGG--------KVEVDPVAIENLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred hhhccCc--------ceecCchhhhheeecHHHHHHHHHhcCccc
Confidence 8754320 001112334578899999999999998854
No 28
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.3e-32 Score=288.03 Aligned_cols=246 Identities=38% Similarity=0.655 Sum_probs=220.2
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
++|.+++.|++|..++++.|++.+.+|+.+|+.|-++|+.+|.+||||||||||||.+|+++|+... ..|+.+.+
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfirvig 244 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRVIG 244 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEeehh
Confidence 5677899999999999999999999999999999999999999999999999999999999999876 68999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHH---HHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVST---LLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~---LL~lLd~l~~~~~ViVIaTTN 835 (1167)
++++.+|+|+....++.+|+.|+....||||+||||.+.+++-..+....+.++.+ |++.|+++.+++++-|+.+||
T Consensus 245 selvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatn 324 (435)
T KOG0729|consen 245 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATN 324 (435)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecC
Confidence 99999999999999999999999999999999999999988766654555555555 455677888999999999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+|+.|||+|+||||+++.++|.+|+.+-|..||+.+.+.+... .+.-++.||+.+...++++|+.+|.+|.++|++..
T Consensus 325 rpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-rdir~ellarlcpnstgaeirsvcteagmfairar- 402 (435)
T KOG0729|consen 325 RPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR- 402 (435)
T ss_pred CCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc-cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-
Confidence 9999999999999999999999999999999999999887654 45678889999999999999999999999998632
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
....|+.||+.|+.++
T Consensus 403 ----------------------rk~atekdfl~av~kv 418 (435)
T KOG0729|consen 403 ----------------------RKVATEKDFLDAVNKV 418 (435)
T ss_pred ----------------------hhhhhHHHHHHHHHHH
Confidence 1245778888888765
No 29
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.98 E-value=2.8e-31 Score=327.81 Aligned_cols=356 Identities=31% Similarity=0.463 Sum_probs=276.4
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.....|+++.|+...++++.+++.+ +..+..+..++...+.+|||+||||||||++++++|.+++ ++|+.+++.
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~-----~~f~~is~~ 219 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGS 219 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEehH
Confidence 3456799999999999999998877 5667777778888889999999999999999999999887 688889888
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
++...+.+.....++.+|..++...|+||||||||.+...+... +......+++.|+..|+++....+++||+|||+
T Consensus 220 ~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~ 299 (644)
T PRK10733 220 DFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR 299 (644)
T ss_pred HhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCC
Confidence 88888889888999999999999999999999999998755432 223345688899999999988889999999999
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFP 916 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~ 916 (1167)
++.||++++||+||++.|.|+.|+.++|.+||+.++...+.. .+.++..+|..+.||+++||.++|++|+..|.+++..
T Consensus 300 p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~ 378 (644)
T PRK10733 300 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKR 378 (644)
T ss_pred hhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999886653 3467888999999999999999999999999876532
Q ss_pred ---hHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCccccccccccccc-CCCCCCccccccchhhhhhhh
Q 001066 917 ---LQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVS-SPLPSHLIPCLLQPLSTLLVS 992 (1167)
Q Consensus 917 ---~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~-a~L~~~iip~v~w~l~~l~~~ 992 (1167)
..++..+........ ......++..+.. ...++++++++..+.- ..-+..++..+.+. ..++.+
T Consensus 379 ~i~~~d~~~a~~~v~~g~---~~~~~~~~~~~~~--------~~a~he~gha~~~~~~~~~~~~~~v~i~prg-~~~g~~ 446 (644)
T PRK10733 379 VVSMVEFEKAKDKIMMGA---ERRSMVMTEAQKE--------STAYHEAGHAIIGRLVPEHDPVHKVTIIPRG-RALGVT 446 (644)
T ss_pred cccHHHHHHHHHHHhccc---ccccccccHHHHH--------HHHHHHHHHHHHHHHccCCCceeEEEEeccC-CCccee
Confidence 233322221111100 0001111211111 1224566666544321 11122334444444 346778
Q ss_pred hhhhccccCCcchhHHHHHHHHHHHhhhhhhhccc--cccccchhhhHHHHHHHHHHHHHHhhcccc
Q 001066 993 LYLDERLWLPPSLTKATKMIQSVIVSALDKKKLLS--DHWWSHINDFLEEADIAKEIERRLQYAGII 1057 (1167)
Q Consensus 993 ~~l~E~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~--~~~tga~~d~~~~~~i~r~i~~~~~~~gl~ 1057 (1167)
.++|++..+..+...+.+.|...++||+++..+++ +.+||+.+|+.+++.||+.| +..+||.
T Consensus 447 ~~~~~~~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~m---v~~~Gms 510 (644)
T PRK10733 447 FFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNM---VTQWGFS 510 (644)
T ss_pred EECCCcccccccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH---HHHhCCC
Confidence 88888766667788899999999999999999998 57999999999999999999 4555655
No 30
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=6.4e-31 Score=307.57 Aligned_cols=250 Identities=40% Similarity=0.650 Sum_probs=218.6
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..+...|++|+|++++++.|.+++.+|+.+++.|..+|+.++.+|||+||||||||++|+++|..++ .+|+.+.+
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-----~~~i~v~~ 198 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVG 198 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-----CCEEEeeh
Confidence 4456789999999999999999999999999999999999999999999999999999999999987 57888889
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccc---hHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQT---HSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~---~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
..+...|.|..+..++.+|..++...|+||||||||.|...+....... ..+.+..|+..++++...++++||+|||
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn 278 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATN 278 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecC
Confidence 9999999999999999999999999999999999999987654433222 2344555666677776677899999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
.++.+|++|+|||||+..|+|++|+.++|.+||+.++...... .+.++..||..|.||+++||.++|++|.+.|+++..
T Consensus 279 ~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~ 357 (389)
T PRK03992 279 RIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR 357 (389)
T ss_pred ChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999876554 346789999999999999999999999999887631
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPC 957 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~ 957 (1167)
..|+..||.+|+.++++..
T Consensus 358 -----------------------~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 358 -----------------------TEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred -----------------------CCcCHHHHHHHHHHHhccc
Confidence 3578999999999887643
No 31
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=4.2e-31 Score=281.15 Aligned_cols=239 Identities=36% Similarity=0.575 Sum_probs=207.9
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..+|+|++|++++++..+-++.+ +..|+.|..+. |++||||||||||||++|+++|++.. ++++.+.+..+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~k-----vp~l~vkat~l 187 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAK-----VPLLLVKATEL 187 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHH-hhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccC-----CceEEechHHH
Confidence 46899999999999987665554 88899998875 78999999999999999999999887 89999999999
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccc-ccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ-DQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV 840 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~-~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L 840 (1167)
++.++|+...+++.+|+.|++..|||+||||+|.|.-.+.-+. ...-+.++++||..|+++..+.+|+.||+||+|+.|
T Consensus 188 iGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 188 IGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 9999999999999999999999999999999999975443222 123468999999999999999999999999999999
Q ss_pred CcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHH-HHHHHHHHHHHHcCCChHH
Q 001066 841 DPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQ-ALCTQAAIIALKRNFPLQE 919 (1167)
Q Consensus 841 d~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~-~Lv~~A~~~A~~R~i~~~d 919 (1167)
|+++++ ||...|+|.+|+.++|..||+.++..++..++ ..+..++..+.|++++||. .+++.|.+.|+..+.
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~-~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~---- 340 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVD-ADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR---- 340 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccc-cCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch----
Confidence 999999 99999999999999999999999999988765 5599999999999999997 456667666665431
Q ss_pred HHHHHHHHhhccccccCCccccCHHHHHHHhhcCCC
Q 001066 920 ILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPP 955 (1167)
Q Consensus 920 i~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P 955 (1167)
-.|+.+|++.|+.+.++
T Consensus 341 -------------------e~v~~edie~al~k~r~ 357 (368)
T COG1223 341 -------------------EKVEREDIEKALKKERK 357 (368)
T ss_pred -------------------hhhhHHHHHHHHHhhcc
Confidence 24667888888887554
No 32
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=312.58 Aligned_cols=330 Identities=41% Similarity=0.600 Sum_probs=261.0
Q ss_pred ccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhc
Q 001066 704 LPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKC 783 (1167)
Q Consensus 704 ~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~ 783 (1167)
+|+..+..+..+++.++.+++++||||+|||++++++|.. . ..++.++.+..+.++.+..+..++.+|..+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 75 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-G-----AEFLSINGPEILSKYVGESELRLRELFEEAEKL 75 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-c-----CcccccCcchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 3567788889999999999999999999999999999988 2 233778889999999999999999999999999
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHH
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMED 863 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eE 863 (1167)
.|+++++|+++.+.+.+..........++..++..++.+. ...+++++.|+.+..+++++++++||...+.+..|+...
T Consensus 76 ~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (494)
T COG0464 76 APSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAG 154 (494)
T ss_pred CCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHH
Confidence 9999999999999988777556667889999999999988 545889999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCccccCH
Q 001066 864 RAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSFAVEE 943 (1167)
Q Consensus 864 R~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~ 943 (1167)
+.+|+......+... .+..+..++..+.||.++++..++..+...+..|.+ ......+.++.
T Consensus 155 ~~ei~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------------~~~~~~~~~~~ 216 (494)
T COG0464 155 RLEILQIHTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------------DLVGEYIGVTE 216 (494)
T ss_pred HHHHHHHHHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------------ccCcccccccH
Confidence 999999888776544 257889999999999999999999999998887753 11223567889
Q ss_pred HHHHHHhhcCCCCCCcccccccccccccCCCCCCccccccchhhhhhhhhhhhccccCCcchhHHHHHHHHHHHhhhhhh
Q 001066 944 RDWLEALSCSPPPCSKREAGIAAHDLVSSPLPSHLIPCLLQPLSTLLVSLYLDERLWLPPSLTKATKMIQSVIVSALDKK 1023 (1167)
Q Consensus 944 ~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~~~iip~v~w~l~~l~~~~~l~E~l~L~~~~~~~~~~i~~~i~~~l~~~ 1023 (1167)
.++..++..+.|+ +++ ....|.+.|.... + ++.++..+...+...
T Consensus 217 ~~~~~~l~~~~~~---~~~-------------~~~~~~v~~~dig------------------g-l~~~k~~l~e~v~~~ 261 (494)
T COG0464 217 DDFEEALKKVLPS---RGV-------------LFEDEDVTLDDIG------------------G-LEEAKEELKEAIETP 261 (494)
T ss_pred HHHHHHHHhcCcc---ccc-------------ccCCCCcceehhh------------------c-HHHHHHHHHHHHHhH
Confidence 9999999988764 111 1234556666211 1 111122111111110
Q ss_pred hccccccccchhhhHHHHHHHHHHHHHHhhcccccCCcccCCCccccCCCCCccCCCCCccccccccchhhhhhhccccC
Q 001066 1024 KLLSDHWWSHINDFLEEADIAKEIERRLQYAGIITGEASFSGLDAFAGDSNDDCANSKPSIAHSYGINCSLLQNISCTAS 1103 (1167)
Q Consensus 1024 ~~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~~~~~~~~~~~~~~~~~~~f~~~~kp~~~~~~~~~~~~~~~~~~~~~ 1103 (1167)
+. +|..| .+.+..+.
T Consensus 262 ---------------------------~~----------------------------~~e~~----------~~~~~~~~ 276 (494)
T COG0464 262 ---------------------------LK----------------------------RPELF----------RKLGLRPP 276 (494)
T ss_pred ---------------------------hh----------------------------ChHHH----------HhcCCCCC
Confidence 00 11111 11121122
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1104 KGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1104 ~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
+ ++|||||||||||+||+|+|+++ +.+|++|++|+|++||+||||+|||++|++.
T Consensus 277 ~----giLl~GpPGtGKT~lAkava~~~--~~~fi~v~~~~l~sk~vGesek~ir~~F~~A 331 (494)
T COG0464 277 K----GVLLYGPPGTGKTLLAKAVALES--RSRFISVKGSELLSKWVGESEKNIRELFEKA 331 (494)
T ss_pred C----eeEEECCCCCCHHHHHHHHHhhC--CCeEEEeeCHHHhccccchHHHHHHHHHHHH
Confidence 2 49999999999999999999999 4999999999999999999999999999874
No 33
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.8e-29 Score=300.76 Aligned_cols=242 Identities=26% Similarity=0.435 Sum_probs=207.8
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..+|++|+|++.+++.+.+.... +.....++|++++++|||+||||||||++|++||.+++ .+|+.++...+
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~-----~~~~~l~~~~l 295 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ-----LPLLRLDVGKL 295 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEEhHHh
Confidence 45799999999999999876532 23445677899999999999999999999999999987 78899999999
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCc-ccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTR-QQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV 840 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~-~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L 840 (1167)
.+.|+|+.+..++.+|..|+...|+||||||||.+...... .......+++..|+..|+. ....++||||||+++.|
T Consensus 296 ~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~L 373 (489)
T CHL00195 296 FGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLL 373 (489)
T ss_pred cccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhC
Confidence 99999999999999999999999999999999998764332 2334567888889988875 34579999999999999
Q ss_pred CcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCC-CChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHH
Q 001066 841 DPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKP-VTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQE 919 (1167)
Q Consensus 841 d~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~-l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~d 919 (1167)
|++++|+|||+..|+|+.|+.++|.+||+.++.+.... ..+.++..||..|.||+++||.++|.+|...|..++
T Consensus 374 d~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~----- 448 (489)
T CHL00195 374 PLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK----- 448 (489)
T ss_pred CHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999999999999999999999999999999886432 346789999999999999999999999998876543
Q ss_pred HHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCC
Q 001066 920 ILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPC 957 (1167)
Q Consensus 920 i~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~ 957 (1167)
..++..||..|+..+.|.+
T Consensus 449 -------------------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 449 -------------------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred -------------------CCcCHHHHHHHHHhcCCCc
Confidence 2467889999999988754
No 34
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.8e-30 Score=313.61 Aligned_cols=218 Identities=27% Similarity=0.350 Sum_probs=179.1
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEec
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARK 757 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~ 757 (1167)
-.+|+++|.++.++++.+++.. ..+++.+|+|+||+|||++|..+|..+.... ....+++++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 3589999999999999998865 5667889999999999999999999987753 345678888
Q ss_pred ccccc--hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 758 GADCL--GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 758 ~~~ll--s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
...+. .+|.|+++.+++.++++.....+.||||||||+|.+++...++.. ...++|+....++.+.+||+|+
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~------DAaNiLKPaLARGeL~~IGATT 307 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAM------DAANLLKPALARGELRCIGATT 307 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccccc------chhhhhHHHHhcCCeEEEEecc
Confidence 87776 689999999999999999998899999999999998776544211 2345666666789999999997
Q ss_pred CCC-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 836 RPE-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 836 ~~d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
..+ +.|+||.| || +.|.+..|+.++...||+.+...|..... .-|+...|.+++..+..|.
T Consensus 308 ~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~-----------V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 308 LDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHG-----------VRITDEALVAAVTLSDRYI 373 (786)
T ss_pred HHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccC-----------ceecHHHHHHHHHHHHhhc
Confidence 543 56999999 99 89999999999999999999887764422 2367788888888888888
Q ss_pred HHcCCChHHHHHHHHHHhhcccc
Q 001066 911 LKRNFPLQEILSAAAEKAFCSKR 933 (1167)
Q Consensus 911 ~~R~i~~~di~~~~e~~~~~~~~ 933 (1167)
..|.+|.++|+..+++....+..
T Consensus 374 ~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 374 PDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred ccCCCCchHHHHHHHHHHHHHhc
Confidence 88899988888888777665543
No 35
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=305.27 Aligned_cols=246 Identities=38% Similarity=0.659 Sum_probs=215.7
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..|..+|++|+|++.+++.|.+++.+|+.++++|..+++.++.++||+||||||||++|++||..+. .+|+.+..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~-----~~fi~V~~ 250 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS-----ATFLRVVG 250 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC-----CCEEEEec
Confidence 3455799999999999999999999999999999999999999999999999999999999999886 46778888
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccc---ccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ---DQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~---~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
..+...|.+.....++.+|..|....|+||||||||.+..++.... .....+.+..|+..|+++....++.||+|||
T Consensus 251 seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATN 330 (438)
T PTZ00361 251 SELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATN 330 (438)
T ss_pred chhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecC
Confidence 8888999999999999999999999999999999999987554322 2223455566777788777777899999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+++.+|++++|+|||+..|+|+.|+.++|.+||+.++..+... .+.++..++..+.||+++||.++|..|.+.|++++.
T Consensus 331 r~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r 409 (438)
T PTZ00361 331 RIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR 409 (438)
T ss_pred ChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998877653 456789999999999999999999999999987652
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
..|+.+||..|+.++
T Consensus 410 -----------------------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 410 -----------------------MKVTQADFRKAKEKV 424 (438)
T ss_pred -----------------------CccCHHHHHHHHHHH
Confidence 357888999988876
No 36
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=99.97 E-value=4.4e-32 Score=316.62 Aligned_cols=159 Identities=21% Similarity=0.341 Sum_probs=139.6
Q ss_pred CCCCCcceecCCCCCCCCCcceeccCCCCccccccCCCCCCCCCCcccc--cCCCC-CCcccccCCCCccccccCCceEE
Q 001066 442 IKQGRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSASEEPNYDIWD--GFGDE-PGWLGRLLGPINDRYGIAGTWVH 518 (1167)
Q Consensus 442 ~~~~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~~--~~~~~-p~~~g~~lg~~~~k~t~~g~WvH 518 (1167)
.++...|+||..++++..|+|||||.|++||||.||||...|.+.|.|. ....+ |+.|||..||+|+...++-.|+|
T Consensus 268 ~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAH 347 (893)
T KOG0954|consen 268 YDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAH 347 (893)
T ss_pred ccccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeE
Confidence 3478899999999999999999999999999999999999998776655 23334 44599999999998778889999
Q ss_pred eeccccCCceEEccCcccc---chHHHHhhcccccccCCC-CCCCceeecCCCCCCcccccccCCCccee-------ccc
Q 001066 519 QHCAVWSPEVYFAGLGCLK---NIRAALCRGRALKCTRCG-RPGATIGCRVDRCPRTYHLPCARANGCIF-------DHR 587 (1167)
Q Consensus 519 ~~CAlw~pev~~~~~~~l~---~i~~~~~~~~~~~C~iC~-~~GA~I~C~~~~C~~~FH~~CA~~~g~~~-------~~~ 587 (1167)
+.||||+|||++.+...|+ .|..|+..||.+.|.+|+ +.||||||+.+.|.++||++||..+|..| |..
T Consensus 348 vsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~~~~~D~v 427 (893)
T KOG0954|consen 348 VSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFHVTCAFEAGLEMKTILKENDEV 427 (893)
T ss_pred eeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhccchhhhhcCCeeeeeeccCCch
Confidence 9999999999999987765 667889999999999998 66999999999999999999999999998 555
Q ss_pred cceeccccccccc
Q 001066 588 KFLIACTDHRHLF 600 (1167)
Q Consensus 588 ~~~~~C~~Hr~~f 600 (1167)
.|..||.+|...-
T Consensus 428 ~~~s~c~khs~~~ 440 (893)
T KOG0954|consen 428 KFKSYCSKHSDHR 440 (893)
T ss_pred hheeecccccccc
Confidence 8888998885543
No 37
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.96 E-value=2e-28 Score=307.21 Aligned_cols=237 Identities=25% Similarity=0.303 Sum_probs=176.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEecc
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARKG 758 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~~ 758 (1167)
.+++++|.++.+.++.+++.. ....++||+||||||||++|++||..+.... ....++.++.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 578999999999988877644 3457899999999999999999999985432 2456788887
Q ss_pred cccc--hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 759 ADCL--GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 759 ~~ll--s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
..++ .+|.|+.+..++.+|.++.+..+.||||||||.|.+++...++.. .+.+.|...| .++.+.+||+||.
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~--~~~~~L~~~l----~~g~i~~IgaTt~ 320 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSM--DASNLLKPAL----SSGKLRCIGSTTY 320 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccH--HHHHHHHHHH----hCCCeEEEEecCH
Confidence 7776 578999999999999999887899999999999987554322211 2223333333 4678999999986
Q ss_pred CC-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 001066 837 PE-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 837 ~d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~ 911 (1167)
.+ .+|++|.| || ..|.|+.|+.+++.+||+.+...+..... ..++..+|..++..+..+..
T Consensus 321 ~e~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~e~~~~-----------v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 321 EEYKNHFEKDRALSR--RF-QKIDVGEPSIEETVKILKGLKEKYEEFHH-----------VKYSDEALEAAVELSARYIN 386 (731)
T ss_pred HHHHHHhhhhHHHHH--hC-ceEEeCCCCHHHHHHHHHHHHHHHHhccC-----------cccCHHHHHHHHHhhhcccc
Confidence 33 57999999 99 58999999999999999987765432111 13677778888888888888
Q ss_pred HcCCChHHHHHHHHHHhhcccc-ccCCccccCHHHHHHHhhcC
Q 001066 912 KRNFPLQEILSAAAEKAFCSKR-VTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 912 ~R~i~~~di~~~~e~~~~~~~~-~~l~~i~It~~D~~~AL~~~ 953 (1167)
.|.+|.+.+...+++....+.. ...+...|+..|+..+++.+
T Consensus 387 ~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 387 DRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred cccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 8888887776655544433221 11123558888888887754
No 38
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=1.8e-28 Score=284.98 Aligned_cols=246 Identities=41% Similarity=0.699 Sum_probs=211.2
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..+...|++|+|++++++.|.+++..|+.+++.|..+|+.++.++||+||||||||++|+++|..+. .+|+.+..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~-----~~~~~v~~ 189 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVG 189 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-----CCEEecch
Confidence 4566789999999999999999999999999999999999999999999999999999999999887 46777778
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccc---cchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQD---QTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~---~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
..+...|.+.....++.+|..++...|+||||||||.+...+..... ......+..++..++.+...++++||+|||
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn 269 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN 269 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 88888899998899999999999999999999999999865433222 222344556666667666667899999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
.++.+|+++++++||+..|+|+.|+.++|.+||+.++...... .+.++..|+..+.||+++||.+++..|++.|++++
T Consensus 270 ~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~- 347 (364)
T TIGR01242 270 RPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE- 347 (364)
T ss_pred ChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-
Confidence 9999999999999999999999999999999999998776543 33578999999999999999999999999998764
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
...|+..||..|+.++
T Consensus 348 ----------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ----------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ----------------------CCccCHHHHHHHHHHh
Confidence 1357888999888753
No 39
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=4.4e-28 Score=288.68 Aligned_cols=224 Identities=38% Similarity=0.595 Sum_probs=185.7
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEE
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAY 753 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~ 753 (1167)
..|..+|++|+|++..++.+++.+.+|+.+++.|..+|+.+++++|||||||||||++|+++|+.+.... ....|
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 3456789999999999999999999999999999999999999999999999999999999999987542 23557
Q ss_pred EEecccccchhhhchHHHHHHHHHHHHHhc----CCcEEEEcCCCCcCcccCccc-ccchHHHHHHHHHHhhcccCCCce
Q 001066 754 FARKGADCLGKYVGDAERQLRLLFQVAEKC----QPSIIFFDEIDGLAPCRTRQQ-DQTHSSVVSTLLALMDGLKSRGSV 828 (1167)
Q Consensus 754 ~~l~~~~lls~~~g~~e~~L~~lF~~A~~~----~psILfIDEID~L~~~~~~~~-~~~~~~vl~~LL~lLd~l~~~~~V 828 (1167)
+.+....++.+|.++.+..++.+|..++.. .|+||||||||.++.++.... ......++.+|+..|+++...+++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 778888899999999999999999988763 699999999999987654332 233457889999999999888899
Q ss_pred EEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHH
Q 001066 829 VVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAI 908 (1167)
Q Consensus 829 iVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~ 908 (1167)
+||+|||+++.||++|+|||||+..|+|+.|+.++|.+||+.++... ..++ .+ +..+.|++++++..+++++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~-~~----l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLD-AD----LAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCch-HH----HHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988642 1121 11 122455566666665555533
No 40
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-29 Score=288.09 Aligned_cols=263 Identities=35% Similarity=0.570 Sum_probs=229.2
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
.+.|++++|++.+++.+.+++.+|+..++.|..+. .+.+++||.||||+|||+|+++||.+++ ..||.+.++.+
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~-----atff~iSassL 222 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESG-----ATFFNISASSL 222 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhc-----ceEeeccHHHh
Confidence 36899999999999999999999999999998764 6678999999999999999999999998 79999999999
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--CCCceEEEccCCCCCc
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--SRGSVVVIGATNRPEA 839 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~~~~ViVIaTTN~~d~ 839 (1167)
.++|+|+.++.++.+|..|+..+|+||||||||.++.++.+.......++..+++..++... ..++|+||||||.|++
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e 302 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWE 302 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchH
Confidence 99999999999999999999999999999999999999988888888889889888887753 3558999999999999
Q ss_pred CCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHH
Q 001066 840 VDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQE 919 (1167)
Q Consensus 840 Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~d 919 (1167)
+|.+++| ||...++||.|+.+.|..||..++...+..+.+.++..|++.|.||++.||.++|+.|++.-.+.......
T Consensus 303 ~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~ 380 (428)
T KOG0740|consen 303 LDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTD 380 (428)
T ss_pred HHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchh
Confidence 9999999 99999999999999999999999998877888899999999999999999999999998865543322100
Q ss_pred HHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccc
Q 001066 920 ILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREA 962 (1167)
Q Consensus 920 i~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~ 962 (1167)
+. . ........++..||..|+..++|.++....
T Consensus 381 ~~------~----~~~~~~r~i~~~df~~a~~~i~~~~s~~~l 413 (428)
T KOG0740|consen 381 LE------F----IDADKIRPITYPDFKNAFKNIKPSVSLEGL 413 (428)
T ss_pred hh------h----cchhccCCCCcchHHHHHHhhccccCcccc
Confidence 00 0 011123567888999999999987766543
No 41
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.95 E-value=9.5e-28 Score=298.49 Aligned_cols=236 Identities=24% Similarity=0.306 Sum_probs=164.1
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEecc
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARKG 758 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~~ 758 (1167)
.++.++|.+..++++.+++.. ..+.++||+||||||||++|+++|..+.... ....++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 467889999999999887754 3457889999999999999999998864332 2345566665
Q ss_pred cccc--hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 759 ADCL--GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 759 ~~ll--s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
..++ ..|.|+++.+++.+|..+....+.||||||||.|.+.+...+.. . .+.++|+.+..++.+.|||+|+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~--~----d~~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--V----DAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH--H----HHHHHHHHHHhCCCeEEEecCCh
Confidence 5555 46889999999999999988889999999999998755322211 1 23344444556788999999998
Q ss_pred CC-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 001066 837 PE-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 837 ~d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~ 911 (1167)
++ .+|++|.| || ..|.|+.|+.+++..||+.+...|..... ..++...|..++..+..+..
T Consensus 325 ~E~~~~~~~D~AL~r--RF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~-----------v~i~~~al~~a~~ls~ryi~ 390 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYEAHHD-----------VRYTAKAVRAAVELAVKYIN 390 (758)
T ss_pred HHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHhhhccC-----------CCcCHHHHHHHHHHhhcccc
Confidence 64 57999999 99 68999999999999999988776544321 12445555555555555555
Q ss_pred HcCCChHHHHHHHHHHhhccccc-cCCccccCHHHHHHHhhc
Q 001066 912 KRNFPLQEILSAAAEKAFCSKRV-TLPSFAVEERDWLEALSC 952 (1167)
Q Consensus 912 ~R~i~~~di~~~~e~~~~~~~~~-~l~~i~It~~D~~~AL~~ 952 (1167)
.|.+|.+.+...+++....+... ......++..|+.+.+++
T Consensus 391 ~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~ 432 (758)
T PRK11034 391 DRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_pred CccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHH
Confidence 56666666655554443322110 001123556666665553
No 42
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=1.8e-27 Score=303.69 Aligned_cols=292 Identities=18% Similarity=0.192 Sum_probs=206.6
Q ss_pred hhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh-----------------------
Q 001066 709 PEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY----------------------- 765 (1167)
Q Consensus 709 ~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~----------------------- 765 (1167)
..+..++|+.+++||||+||||||||+||+|||.+++ ++|+.+.+.+++..+
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~-----VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSY-----VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcC-----CceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 4455778899999999999999999999999999987 899999888887543
Q ss_pred ------------------hchHH--HHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--
Q 001066 766 ------------------VGDAE--RQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-- 823 (1167)
Q Consensus 766 ------------------~g~~e--~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-- 823 (1167)
++..+ .+++.+|+.|++.+||||||||||.|..... ....+..|++.|++..
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhcccccc
Confidence 11122 2488899999999999999999999986311 1123678889998753
Q ss_pred -CCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc--CCCCCChhHHHHHHHHccCCcHHHHH
Q 001066 824 -SRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER--WPKPVTGSLLKWIAARTAGFAGADLQ 900 (1167)
Q Consensus 824 -~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~--~~~~l~d~~L~~LA~~t~G~s~aDL~ 900 (1167)
...+|+||||||+|+.|||||+|||||++.|.|+.|+..+|.++|..++.. ........++..+|..|.||+|+||.
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 456799999999999999999999999999999999999999998865433 22222234689999999999999999
Q ss_pred HHHHHHHHHHHHcCC---ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccc---cCCC
Q 001066 901 ALCTQAAIIALKRNF---PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLV---SSPL 974 (1167)
Q Consensus 901 ~Lv~~A~~~A~~R~i---~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~---~a~L 974 (1167)
+||++|+..|++++. ...++..+......... ... ..+... .. ...++|+|+...+ ..++
T Consensus 1848 nLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~-~~~--~~~~~~--~i---------a~yEiGhAvvq~~L~~~~pv 1913 (2281)
T CHL00206 1848 ALTNEALSISITQKKSIIDTNTIRSALHRQTWDLR-SQV--RSVQDH--GI---------LFYQIGRAVAQNVLLSNCPI 1913 (2281)
T ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhh-hcc--cCcchh--hh---------hhhHHhHHHHHHhccCCCCc
Confidence 999999999999874 34445444433332211 100 111111 11 1334555543322 1222
Q ss_pred CC-Ccc-ccccch-hhhhhhhhhhhccccCCcchhHHHHHHHHHHHhhhhhhhccc
Q 001066 975 PS-HLI-PCLLQP-LSTLLVSLYLDERLWLPPSLTKATKMIQSVIVSALDKKKLLS 1027 (1167)
Q Consensus 975 ~~-~ii-p~v~w~-l~~l~~~~~l~E~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~ 1027 (1167)
.+ .++ ..-.|+ -...+.+.|++.. .......++..|..+++|+++....+.
T Consensus 1914 ~kISIy~~~~~~r~~~~yl~~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~ 1967 (2281)
T CHL00206 1914 DPISIYMKKKSCKEGDSYLYKWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSL 1967 (2281)
T ss_pred ceEEEecCCccccCcccceeEeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccC
Confidence 12 111 111232 2334677888866 455566778889999999999876553
No 43
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.95 E-value=1.3e-26 Score=293.01 Aligned_cols=190 Identities=24% Similarity=0.302 Sum_probs=147.3
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEec
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARK 757 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~ 757 (1167)
..+++++|.++.++++.+++.. ....+++|+||||||||++|+.+|..+.... ....++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 3678999999998888877644 4456899999999999999999999986432 234566666
Q ss_pred ccccc--hhhhchHHHHHHHHHHHHHh-cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 758 GADCL--GKYVGDAERQLRLLFQVAEK-CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 758 ~~~ll--s~~~g~~e~~L~~lF~~A~~-~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
...+. ..|.|+++..++.+|.++.. ..+.||||||||.|.+++...+... + .++|.....++.+.|||||
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d---~----~n~Lkp~l~~G~l~~IgaT 323 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD---A----ANLLKPALARGELRTIAAT 323 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccccc---H----HHHhhHHhhCCCeEEEEec
Confidence 66655 36889999999999999875 3678999999999987554322211 1 1233444467889999999
Q ss_pred CCCC-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccC----CCCCChhHHHHHHHHccCCc
Q 001066 835 NRPE-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW----PKPVTGSLLKWIAARTAGFA 895 (1167)
Q Consensus 835 N~~d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~----~~~l~d~~L~~LA~~t~G~s 895 (1167)
+..+ .+|++|.| || ..|.|++|+.+++..||+.+...+ ...+++..+..++..+.+|.
T Consensus 324 T~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 8643 58999999 99 689999999999999988776654 35567888888888887764
No 44
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-27 Score=260.01 Aligned_cols=226 Identities=39% Similarity=0.659 Sum_probs=200.8
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..+|+.|.|+-.+++.+++.+..|+..+++|.++|+.+|.+++||||||+|||.+|++||..++ ++|+.+.++.+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg-----~nfl~v~ss~l 202 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG-----VNFLKVVSSAL 202 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC-----CceEEeeHhhh
Confidence 4589999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHH---hhcccCCCceEEEccCCCCC
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLAL---MDGLKSRGSVVVIGATNRPE 838 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~l---Ld~l~~~~~ViVIaTTN~~d 838 (1167)
..+|.|++...++..|..|+...|||||+||||.+.+.+.+.+......++.+|+++ |+++...++|-+|+|||+|+
T Consensus 203 v~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd 282 (388)
T KOG0651|consen 203 VDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD 282 (388)
T ss_pred hhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc
Confidence 999999999999999999999999999999999999877655555555666666555 45566678899999999999
Q ss_pred cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 001066 839 AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR 913 (1167)
Q Consensus 839 ~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R 913 (1167)
.|+|+|+||||+++.+++|.|+...|..|++.+....... -..+.+.+.+.+.||.++|+++.|.+|...|+..
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~-Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH-GEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeecccccccc-ccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 9999999999999999999999999999998877654322 2344677888999999999999999998877643
No 45
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=99.94 E-value=7.3e-27 Score=262.84 Aligned_cols=152 Identities=22% Similarity=0.334 Sum_probs=124.2
Q ss_pred cceecCCCCCCCCCcceeccCCCCccccccCCCC---CCCCC-----CcccccCCC-----CCCc-ccccCCCCcccccc
Q 001066 447 RCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSA---SEEPN-----YDIWDGFGD-----EPGW-LGRLLGPINDRYGI 512 (1167)
Q Consensus 447 ~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~---~~~~~-----~~~~~~~~~-----~p~~-~g~~lg~~~~k~t~ 512 (1167)
.||||.......-++++.||.|++.||..|||.. +++.+ ...|+|..| -|.| +||-.+|+++. |+
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKe-tD 199 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKE-TD 199 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccc-cc
Confidence 8999977777777999999999999999999986 22221 123443333 2666 89999999976 67
Q ss_pred CCceEEeeccccCCceEEccCccccchHH---HHhhcccccccCCC-----CCCCceeecCCCCCCcccccccCCCccee
Q 001066 513 AGTWVHQHCAVWSPEVYFAGLGCLKNIRA---ALCRGRALKCTRCG-----RPGATIGCRVDRCPRTYHLPCARANGCIF 584 (1167)
Q Consensus 513 ~g~WvH~~CAlw~pev~~~~~~~l~~i~~---~~~~~~~~~C~iC~-----~~GA~I~C~~~~C~~~FH~~CA~~~g~~~ 584 (1167)
-|+|||++||||+|+|.|+....+.+|.- -+.......|+.|. ++|+||.|..+.|..+|||||||..|++.
T Consensus 200 igrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARtGvci~CdaGMCk~YfHVTCAQk~GlLv 279 (707)
T KOG0957|consen 200 IGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFARTGVCIRCDAGMCKEYFHVTCAQKLGLLV 279 (707)
T ss_pred hhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhhcceeeeccchhhhhhhhhhHHhhhccee
Confidence 78999999999999999999888777643 34555668999997 66999999999999999999999999999
Q ss_pred cc-------ccceecccccccc
Q 001066 585 DH-------RKFLIACTDHRHL 599 (1167)
Q Consensus 585 ~~-------~~~~~~C~~Hr~~ 599 (1167)
+. +.|..||.+|.+.
T Consensus 280 ea~~e~DiAdpfya~CK~Ht~r 301 (707)
T KOG0957|consen 280 EATDENDIADPFYAFCKKHTNR 301 (707)
T ss_pred eccccccchhhHHHHHHhhcch
Confidence 32 5999999999663
No 46
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=99.94 E-value=1.2e-28 Score=276.91 Aligned_cols=140 Identities=20% Similarity=0.279 Sum_probs=120.9
Q ss_pred CCcceecCCCCCCCCCcceeccCCCCccccccCCCCCCCCCCcccccCCCCCCc-----ccccCCCCccccccCCceEEe
Q 001066 445 GRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSASEEPNYDIWDGFGDEPGW-----LGRLLGPINDRYGIAGTWVHQ 519 (1167)
Q Consensus 445 ~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~~~~~~~p~~-----~g~~lg~~~~k~t~~g~WvH~ 519 (1167)
.-+|.+|...++++.|.+||||+|+++|||.||||...|.+.|+|..+--.|.- +||-..|++ ++|++|.|+|+
T Consensus 193 d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaF-kqT~dgrW~H~ 271 (669)
T COG5141 193 DDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAF-KQTSDGRWGHV 271 (669)
T ss_pred hhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCce-eeccCCchHhH
Confidence 568999999999999999999999999999999999999998888744443331 334444444 57999999999
Q ss_pred eccccCCceEEccCcc---ccchHHHHhhcccccccCCCCC-CCceeecCCCCCCcccccccCCCcceec
Q 001066 520 HCAVWSPEVYFAGLGC---LKNIRAALCRGRALKCTRCGRP-GATIGCRVDRCPRTYHLPCARANGCIFD 585 (1167)
Q Consensus 520 ~CAlw~pev~~~~~~~---l~~i~~~~~~~~~~~C~iC~~~-GA~I~C~~~~C~~~FH~~CA~~~g~~~~ 585 (1167)
+||||+|+++|++.-. +.||..+...+|++-|++|++. |+||||+..+|.++||++||+++|+.+.
T Consensus 272 iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag~f~~ 341 (669)
T COG5141 272 ICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAGYFDL 341 (669)
T ss_pred hHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhcchhhh
Confidence 9999999999998554 5688899999999999999855 9999999999999999999999999884
No 47
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.94 E-value=4.8e-26 Score=288.84 Aligned_cols=190 Identities=24% Similarity=0.344 Sum_probs=150.4
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEecc
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARKG 758 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~~ 758 (1167)
.|++++|.++.++++.+++.. ..++++||+||||||||++|+++|..+.... ....++.++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 578899999999999998754 4567899999999999999999999986432 2467888888
Q ss_pred cccc--hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 759 ADCL--GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 759 ~~ll--s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
..++ .+|.|+++.+++.+|.++....+.||||||||.|.+++...+... +.++|.....++.+.+||+|+.
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~-------~a~lLkp~l~rg~l~~IgaTt~ 316 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAID-------AANILKPALARGELQCIGATTL 316 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCccc-------HHHHhHHHHhCCCcEEEEeCCH
Confidence 7776 578999999999999999887889999999999997654333221 2233334445788999999987
Q ss_pred CC-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc----CCCCCChhHHHHHHHHccCCcH
Q 001066 837 PE-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER----WPKPVTGSLLKWIAARTAGFAG 896 (1167)
Q Consensus 837 ~d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~----~~~~l~d~~L~~LA~~t~G~s~ 896 (1167)
.+ ..+++|.+ || ..|.++.|+.++...|++..... ....+++..+..++..+.+|.+
T Consensus 317 ~ey~~~ie~D~aL~r--Rf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 317 DEYRKHIEKDPALER--RF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred HHHHHHHhcCHHHHh--cc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 54 47899998 99 57899999999999999876543 3445778888888888887654
No 48
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.94 E-value=9.7e-28 Score=298.73 Aligned_cols=159 Identities=22% Similarity=0.332 Sum_probs=140.3
Q ss_pred CCCCCCCcceecCCCCCCCCCcceeccCCCCccccccCCCCCCCCCCcccccCCCCCC-----cccccCCCCccccccCC
Q 001066 440 PRIKQGRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSASEEPNYDIWDGFGDEPG-----WLGRLLGPINDRYGIAG 514 (1167)
Q Consensus 440 ~~~~~~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~~~~~~~p~-----~~g~~lg~~~~k~t~~g 514 (1167)
..++...+|++|..+++.+.|.|||||.|+++|||.|||+..+|.+.|.|..+...|. .+|+-.|++++ +|++|
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFk-qt~dg 292 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFK-QTDDG 292 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcce-eccCC
Confidence 4567788999999999999999999999999999999999999999988886666655 26888888886 48999
Q ss_pred ceEEeeccccCCceEEccCcccc---chHHHHhhcccccccCCCC-C-CCceeecCCCCCCcccccccCCCcceecc---
Q 001066 515 TWVHQHCAVWSPEVYFAGLGCLK---NIRAALCRGRALKCTRCGR-P-GATIGCRVDRCPRTYHLPCARANGCIFDH--- 586 (1167)
Q Consensus 515 ~WvH~~CAlw~pev~~~~~~~l~---~i~~~~~~~~~~~C~iC~~-~-GA~I~C~~~~C~~~FH~~CA~~~g~~~~~--- 586 (1167)
.|+|++||+|+|+|+|.+...++ +|+.+...||++.|++|+. . ||||||+..+|.++||+|||+++|++|..
T Consensus 293 rw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hvtca~~agl~m~~~~~ 372 (1051)
T KOG0955|consen 293 RWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHVTCARRAGLYMKSNTV 372 (1051)
T ss_pred ceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhhhhHhhcCceEeeccc
Confidence 99999999999999999976644 7788888999999999984 4 89999999999999999999999999942
Q ss_pred -----------ccceecccccccc
Q 001066 587 -----------RKFLIACTDHRHL 599 (1167)
Q Consensus 587 -----------~~~~~~C~~Hr~~ 599 (1167)
.....||..|...
T Consensus 373 ~~~s~~~~s~~v~~~syC~~H~pp 396 (1051)
T KOG0955|consen 373 KELSKNGTSQSVNKISYCDKHTPP 396 (1051)
T ss_pred ccccccccccccceeeeccCCCCc
Confidence 2678899999876
No 49
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.94 E-value=7.5e-28 Score=279.01 Aligned_cols=152 Identities=18% Similarity=0.287 Sum_probs=131.8
Q ss_pred cceecCCCCCCCCCcceecc--CCCCccccccCCCCCCCCCCcccccCCCC------CCcccccCCCCccccccCCceEE
Q 001066 447 RCGLCGCGNDGKPPKRLIQD--AGDSENEVYSGSSASEEPNYDIWDGFGDE------PGWLGRLLGPINDRYGIAGTWVH 518 (1167)
Q Consensus 447 ~C~lC~~~~~~~~~~~v~cd--~c~~~vh~~c~g~~~~~~~~~~~~~~~~~------p~~~g~~lg~~~~k~t~~g~WvH 518 (1167)
=||||-+-..+..|..|+|| +|.++|||.||||..+|.+.|+|..+.-. .+.|||+..+++|| |+.|.|+|
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKk-TDn~GWAH 85 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKK-TDNGGWAH 85 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceec-ccCCCceE
Confidence 49999988899999999997 69999999999999999999888733321 22378888888876 77888999
Q ss_pred eeccccCCceEEccCccccch--HHHHhhcccccccCCCCC--------CCceeecCCCCCCcccccccCCCccee----
Q 001066 519 QHCAVWSPEVYFAGLGCLKNI--RAALCRGRALKCTRCGRP--------GATIGCRVDRCPRTYHLPCARANGCIF---- 584 (1167)
Q Consensus 519 ~~CAlw~pev~~~~~~~l~~i--~~~~~~~~~~~C~iC~~~--------GA~I~C~~~~C~~~FH~~CA~~~g~~~---- 584 (1167)
|+||||+|||.|+++..|+.| .-++..+++++||||.+. |||++|...+|+++||||||+.+|++.
T Consensus 86 VVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~g 165 (900)
T KOG0956|consen 86 VVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEG 165 (900)
T ss_pred EEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccc
Confidence 999999999999999998855 788999999999999733 999999999999999999999999988
Q ss_pred ---ccccceecccccccc
Q 001066 585 ---DHRKFLIACTDHRHL 599 (1167)
Q Consensus 585 ---~~~~~~~~C~~Hr~~ 599 (1167)
|..+|.-||.+|...
T Consensus 166 n~~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 166 NISDNVKYCGYCKYHFSK 183 (900)
T ss_pred cccccceechhHHHHHHH
Confidence 555888999999443
No 50
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=1.5e-24 Score=245.04 Aligned_cols=171 Identities=18% Similarity=0.202 Sum_probs=148.3
Q ss_pred ccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHh-----cCCcEE
Q 001066 714 NLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEK-----CQPSII 788 (1167)
Q Consensus 714 ~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~-----~~psIL 788 (1167)
.+++.+|.+++||||||||||++|++||.+++ ++|+.+++.++.++|+|++++.++.+|..|.. .+||||
T Consensus 142 ~~~ik~PlgllL~GPPGcGKTllAraiA~elg-----~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 142 LPNIKVPLILGIWGGKGQGKSFQCELVFKKMG-----IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC-----CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 36789999999999999999999999999998 78999999999999999999999999999975 469999
Q ss_pred EEcCCCCcCcccCcccccchHHHH-HHHHHHhhcc------------cCCCceEEEccCCCCCcCCcccCCCCCcccccc
Q 001066 789 FFDEIDGLAPCRTRQQDQTHSSVV-STLLALMDGL------------KSRGSVVVIGATNRPEAVDPALRRPGRFDREIY 855 (1167)
Q Consensus 789 fIDEID~L~~~~~~~~~~~~~~vl-~~LL~lLd~l------------~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~ 855 (1167)
||||||.+++.+...+....++++ .+|+++||.+ ....+|+||+|||+|+.|+++|+|+|||+..|
T Consensus 217 FIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i- 295 (413)
T PLN00020 217 FINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY- 295 (413)
T ss_pred EEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee-
Confidence 999999999876544444444554 7899998863 23567999999999999999999999998865
Q ss_pred cCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccC
Q 001066 856 FPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAG 893 (1167)
Q Consensus 856 ~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G 893 (1167)
..|+.++|.+||+.+++... ++..++..|+..+.|
T Consensus 296 -~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~g 330 (413)
T PLN00020 296 -WAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPG 330 (413)
T ss_pred -CCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCC
Confidence 58999999999999998865 456888889988877
No 51
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.92 E-value=1.1e-23 Score=268.23 Aligned_cols=203 Identities=27% Similarity=0.373 Sum_probs=152.1
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEecc
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARKG 758 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~~ 758 (1167)
.+++++|.++.++++.+++.. ....+++|+||||||||++|+++|..+.... ....++.++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 578899999998888887644 4557899999999999999999999875421 2356677766
Q ss_pred cccc--hhhhchHHHHHHHHHHHHHhc-CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCL--GKYVGDAERQLRLLFQVAEKC-QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~ll--s~~~g~~e~~L~~lF~~A~~~-~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
..++ ..|.|+++..++.+|..+... .+.||||||||.|.+++...+. .. ..++|.....++.+.|||+|+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d----~~~~Lk~~l~~g~i~~IgaTt 310 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MD----AGNMLKPALARGELHCIGATT 310 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hH----HHHHhchhhhcCceEEEEeCc
Confidence 6665 568899999999999988654 5899999999999875433221 11 223444445678899999998
Q ss_pred CCC-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCC----CCCChhHHHHHHHHccCCcH-----HHHHH
Q 001066 836 RPE-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWP----KPVTGSLLKWIAARTAGFAG-----ADLQA 901 (1167)
Q Consensus 836 ~~d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~----~~l~d~~L~~LA~~t~G~s~-----aDL~~ 901 (1167)
..+ .+|++|.| || ..|.++.|+.+++..||+.+...+. ..+.+..+..++..+.+|.. .---.
T Consensus 311 ~~e~r~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAid 387 (852)
T TIGR03346 311 LDEYRKYIEKDAALER--RF-QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAID 387 (852)
T ss_pred HHHHHHHhhcCHHHHh--cC-CEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHH
Confidence 763 57999999 99 5789999999999999998876653 34567778888887776643 33334
Q ss_pred HHHHHHHH
Q 001066 902 LCTQAAII 909 (1167)
Q Consensus 902 Lv~~A~~~ 909 (1167)
|+.+|...
T Consensus 388 lld~a~a~ 395 (852)
T TIGR03346 388 LIDEAAAR 395 (852)
T ss_pred HHHHHHHH
Confidence 55555443
No 52
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.91 E-value=1.4e-23 Score=266.41 Aligned_cols=188 Identities=27% Similarity=0.382 Sum_probs=144.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEecc
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARKG 758 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~~ 758 (1167)
.+++++|.+..++++.+++.. ....+++|+||||||||+||++||..+.... ....++.++.
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 588999999999988887754 4457899999999999999999999985432 2456777766
Q ss_pred cccc--hhhhchHHHHHHHHHHHHHh-cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCL--GKYVGDAERQLRLLFQVAEK-CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~ll--s~~~g~~e~~L~~lF~~A~~-~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
..++ .+|.|+++..++.+|..+.. ..+.||||||||.|.+++...+.. .. .++|.....++.+.|||+|+
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~---d~----~~~lkp~l~~g~l~~IgaTt 315 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DA----GNMLKPALARGELHCVGATT 315 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccch---hH----HHHhcchhhcCCCeEEEcCC
Confidence 6665 56889999999999998654 468899999999998765433221 11 23344445688999999999
Q ss_pred CCC-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCC----CCCChhHHHHHHHHccCC
Q 001066 836 RPE-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWP----KPVTGSLLKWIAARTAGF 894 (1167)
Q Consensus 836 ~~d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~----~~l~d~~L~~LA~~t~G~ 894 (1167)
..+ ++|++|.| || ..|.++.|+.+++..||+.+...+. ..+.+..+...+..+.+|
T Consensus 316 ~~e~r~~~~~d~al~r--Rf-~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 316 LDEYRQYIEKDAALER--RF-QKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred CHHHHHHhhhcHHHHh--hC-CEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 876 48999999 99 4789999999999999998876653 344566666655555444
No 53
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.7e-23 Score=235.06 Aligned_cols=267 Identities=20% Similarity=0.186 Sum_probs=208.8
Q ss_pred eeccccccccccCcchhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhh---ccccChHHHHHhhHHHHHHHhhc
Q 001066 590 LIACTDHRHLFQPYGDQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLE---NCGEDEEFLKREGKRLHRDLLRI 666 (1167)
Q Consensus 590 ~~~C~~Hr~~fqp~g~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~---~~~~d~~~lk~~~~d~~~aL~~v 666 (1167)
.+.....+..----.|++++.|+.+|++|++|||+++|++|.+++++|+.+... ......+.+++++.||..+|.+|
T Consensus 411 ~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dV 490 (744)
T KOG0741|consen 411 KIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDV 490 (744)
T ss_pred EhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhc
Confidence 333444444444556889999999999999999999999999999999876552 22345668999999999999999
Q ss_pred cCcccCCCCCCCCCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 667 APVYIGGSDSDSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 667 ~p~~~~~~~~~~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
+|+|+.+.+....... .|+-.+-..+.+++.....+.+..++....+..++||+||||+|||+||..+|....
T Consensus 491 kPAFG~see~l~~~~~------~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~- 563 (744)
T KOG0741|consen 491 KPAFGISEEDLERFVM------NGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSD- 563 (744)
T ss_pred CcccCCCHHHHHHHHh------CCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcC-
Confidence 9999765544333222 566666666777776666666777777778888999999999999999999998776
Q ss_pred CCCceEEEEecccccc-hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCC
Q 001066 747 GDKRIAYFARKGADCL-GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSR 825 (1167)
Q Consensus 747 ~~~~i~~~~l~~~~ll-s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~ 825 (1167)
++|+.+..+.-+ +..-...-..++.+|+.|++++-+||+||+|++|+. +.+.++++++.++++|+.+|+..++.
T Consensus 564 ----FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD-~vpIGPRfSN~vlQaL~VllK~~ppk 638 (744)
T KOG0741|consen 564 ----FPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD-YVPIGPRFSNLVLQALLVLLKKQPPK 638 (744)
T ss_pred ----CCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc-ccccCchhhHHHHHHHHHHhccCCCC
Confidence 788877555443 333333456799999999999999999999999986 88899999999999999999998777
Q ss_pred Cc-eEEEccCCCCCcCC-cccCCCCCcccccccCCCCH-HHHHHHHHH
Q 001066 826 GS-VVVIGATNRPEAVD-PALRRPGRFDREIYFPLPSM-EDRAAILSL 870 (1167)
Q Consensus 826 ~~-ViVIaTTN~~d~Ld-~aLlrpgRF~~~I~~~~P~~-eER~eIL~~ 870 (1167)
++ ++|++||...+.|. -.+.. .|+..|++|..+. ++..++|..
T Consensus 639 g~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 639 GRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred CceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 64 67777777665543 24555 7999999997755 777777764
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=8.3e-19 Score=195.26 Aligned_cols=219 Identities=23% Similarity=0.272 Sum_probs=163.7
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCC---CCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--CceEEEEecc
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLT---PPRGVLLHGHPGTGKTLVVRALIGSCARGD--KRIAYFARKG 758 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~---~~~~VLL~GPpGTGKTtLAraLA~~l~~~~--~~i~~~~l~~ 758 (1167)
.+++|+|++.+|++|.+++.++... ......|+. ...++||+||||||||++|+++|..+.... ....++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 4688999999999999998886443 222334443 345799999999999999999999875322 2346778888
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE 838 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d 838 (1167)
.++.+.|+++....++.+|..+. ++||||||+|.|.. ..+..+....+..|+..|+.. ...+++|+++...+
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~---~~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~ 154 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR---GGEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDE 154 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc---CCccchHHHHHHHHHHHHhcc--CCCEEEEecCCcch
Confidence 89999999999888888887764 58999999999964 112233456778888888764 34466665554322
Q ss_pred -----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHcc---------CCcHHHHHHHHH
Q 001066 839 -----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTA---------GFAGADLQALCT 904 (1167)
Q Consensus 839 -----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~---------G~s~aDL~~Lv~ 904 (1167)
.++|+|++ ||...|.||.|+.+++.+|++.++......+++..+..|+.... .-+++.+++++.
T Consensus 155 ~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 155 MDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred hHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 36889998 99889999999999999999999988777777777777755421 235677888888
Q ss_pred HHHHHHHHc
Q 001066 905 QAAIIALKR 913 (1167)
Q Consensus 905 ~A~~~A~~R 913 (1167)
.|......|
T Consensus 233 ~a~~~~~~r 241 (261)
T TIGR02881 233 KAIRRQAVR 241 (261)
T ss_pred HHHHHHHHH
Confidence 877665544
No 55
>CHL00181 cbbX CbbX; Provisional
Probab=99.79 E-value=1.8e-18 Score=195.05 Aligned_cols=217 Identities=24% Similarity=0.317 Sum_probs=165.1
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCC---CcEEEEcCCCCcHHHHHHHHHHHhhcCC--CceEEEEeccccc
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPP---RGVLLHGHPGTGKTLVVRALIGSCARGD--KRIAYFARKGADC 761 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~---~~VLL~GPpGTGKTtLAraLA~~l~~~~--~~i~~~~l~~~~l 761 (1167)
+|+|++.+|++|.+++.+ +.........|+.++ .++||+||||||||++|+++|..+.... ..-+++.++..++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 689999999999999877 445566667776543 4599999999999999999999875321 1235788888888
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC---
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE--- 838 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d--- 838 (1167)
.+.|+|........+|..+ .++||||||++.|...+ ........++..|+.+|+.. ...++||++++...
T Consensus 103 ~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~--~~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPD--NERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCC--CccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 8889988877777777765 45899999999986422 22335568888999999854 35577887776422
Q ss_pred --cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHc------cCCc-HHHHHHHHHHHHHH
Q 001066 839 --AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAART------AGFA-GADLQALCTQAAII 909 (1167)
Q Consensus 839 --~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t------~G~s-~aDL~~Lv~~A~~~ 909 (1167)
.++|+|++ ||+..|+|++|+.+++.+|+..++......+++..+..+.... ..|. ++++++++.+|...
T Consensus 176 ~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 176 FYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 34689998 9999999999999999999999998877666666555444431 2333 79999999888776
Q ss_pred HHHc
Q 001066 910 ALKR 913 (1167)
Q Consensus 910 A~~R 913 (1167)
...|
T Consensus 254 ~~~r 257 (287)
T CHL00181 254 QANR 257 (287)
T ss_pred HHHH
Confidence 6555
No 56
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.78 E-value=2.7e-18 Score=193.49 Aligned_cols=220 Identities=21% Similarity=0.280 Sum_probs=171.4
Q ss_pred Ccc-cccChHHHHHHHHHHHHccccChhhhhccCCCC---CCcEEEEcCCCCcHHHHHHHHHHHhhcCCC--ceEEEEec
Q 001066 684 GFE-SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTP---PRGVLLHGHPGTGKTLVVRALIGSCARGDK--RIAYFARK 757 (1167)
Q Consensus 684 ~~d-dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~---~~~VLL~GPpGTGKTtLAraLA~~l~~~~~--~i~~~~l~ 757 (1167)
.++ .|+|++++|++|.+++.+ +..+..+.+.|+.+ ..++||+||||||||++|+++|..+..... .-+++.++
T Consensus 19 ~l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 19 QLDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred HHHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 344 589999999999999888 66677777778764 458999999999999999999998864321 23688888
Q ss_pred ccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 758 GADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 758 ~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
+.++++.|+|.....+..+|+.+ .++|||||||+.|...+ ........++..|+..|+.. ..+++||++++..
T Consensus 98 ~~~l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~--~~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~ 170 (284)
T TIGR02880 98 RDDLVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPD--NERDYGQEAIEILLQVMENQ--RDDLVVILAGYKD 170 (284)
T ss_pred HHHHhHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCC--CccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 88888888888877788888876 34899999999986422 12334567788899999853 3567888777643
Q ss_pred --C---cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHH-------ccCCcHHHHHHHHHH
Q 001066 838 --E---AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAAR-------TAGFAGADLQALCTQ 905 (1167)
Q Consensus 838 --d---~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~-------t~G~s~aDL~~Lv~~ 905 (1167)
+ .++|+|.+ ||...|+||+|+.+++..|++.++......+++..+..++.+ ..--+.+.|++++.+
T Consensus 171 ~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 171 RMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred HHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 2 24899998 999999999999999999999999987777777777777665 233468999999998
Q ss_pred HHHHHHHc
Q 001066 906 AAIIALKR 913 (1167)
Q Consensus 906 A~~~A~~R 913 (1167)
+......|
T Consensus 249 ~~~~~~~r 256 (284)
T TIGR02880 249 ARLRQANR 256 (284)
T ss_pred HHHHHHHH
Confidence 87766554
No 57
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.74 E-value=6.8e-18 Score=166.14 Aligned_cols=130 Identities=42% Similarity=0.743 Sum_probs=115.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcC-CcEEEEcCCCCcCcccC
Q 001066 723 VLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQ-PSIIFFDEIDGLAPCRT 801 (1167)
Q Consensus 723 VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~-psILfIDEID~L~~~~~ 801 (1167)
|||+||||||||++|+.+|+.++ ++++.+++..+.+.+.+.....+..+|..+.... |+||||||+|.+.+..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~ 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccccccccccccccccccccccccccceeeeeccchhcccccc
Confidence 79999999999999999999987 7899999999998899999999999999999887 99999999999998664
Q ss_pred cccccchHHHHHHHHHHhhcccCC-CceEEEccCCCCCcCCcccCCCCCcccccccCC
Q 001066 802 RQQDQTHSSVVSTLLALMDGLKSR-GSVVVIGATNRPEAVDPALRRPGRFDREIYFPL 858 (1167)
Q Consensus 802 ~~~~~~~~~vl~~LL~lLd~l~~~-~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~ 858 (1167)
.........+++.|+..|+..... .+++||+|||.++.+++.+++ +||+..|+||.
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 445556678899999999987665 569999999999999999996 79999998873
No 58
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.4e-17 Score=188.57 Aligned_cols=204 Identities=26% Similarity=0.321 Sum_probs=157.4
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|+.|+--.+.+++|.+=+..++...++|.+.|.+..++.|||||||||||+++.|+|+.+. +.++.+......
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~-----ydIydLeLt~v~ 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN-----YDIYDLELTEVK 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC-----CceEEeeecccc
Confidence 689999999999999999999999999999999999999999999999999999999999987 455555443321
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccc-----c--chHHHHHHHHHHhhcccCCC--ceEEEcc
Q 001066 763 GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQD-----Q--THSSVVSTLLALMDGLKSRG--SVVVIGA 833 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~-----~--~~~~vl~~LL~lLd~l~~~~--~ViVIaT 833 (1167)
.+.+ ++.++..+ ...+||+|.+||.-+..+..... . ...-.++.||+.+|++.+.. ..|||.|
T Consensus 273 ----~n~d--Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 273 ----LDSD--LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred ----CcHH--HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEe
Confidence 2222 56665443 35689999999977542222111 1 12245788999999997766 6788889
Q ss_pred CCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccC--CcHHHHHHH
Q 001066 834 TNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAG--FAGADLQAL 902 (1167)
Q Consensus 834 TN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G--~s~aDL~~L 902 (1167)
||.++.|||||+||||.+.+|++..-+.++-..++..++..-. +...+..|.+...+ .||+++...
T Consensus 345 TNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 345 TNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred cCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHHH
Confidence 9999999999999999999999999999999999999887532 22334444443333 589887643
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.72 E-value=6.6e-17 Score=173.43 Aligned_cols=190 Identities=22% Similarity=0.264 Sum_probs=130.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|+++++..+.-++..... .-....++|||||||+||||||+.||++++ ..|...+++.+-
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~sg~~i~ 87 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELG-----VNFKITSGPAIE 87 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC--
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccC-----CCeEeccchhhh
Confidence 3799999999999998766643211 113356899999999999999999999998 455555543321
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc----------------CCC
Q 001066 763 GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK----------------SRG 826 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~----------------~~~ 826 (1167)
+ . ..+..++... ....||||||||+|.. .++..|+..|+... .-.
T Consensus 88 -k-~----~dl~~il~~l--~~~~ILFIDEIHRlnk-----------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 -K-A----GDLAAILTNL--KEGDILFIDEIHRLNK-----------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp -S-C----HHHHHHHHT----TT-EEEECTCCC--H-----------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred -h-H----HHHHHHHHhc--CCCcEEEEechhhccH-----------HHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 1 2223333322 3568999999999975 66778888887631 113
Q ss_pred ceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 827 SVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 827 ~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
++.+||||++...|.+.|+. ||.....+..++.++..+|+......+...+++.....||.++.| +|+-...|++++
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 58999999999999999998 998888999999999999999999888888999999999999987 777666666655
Q ss_pred H
Q 001066 907 A 907 (1167)
Q Consensus 907 ~ 907 (1167)
.
T Consensus 226 r 226 (233)
T PF05496_consen 226 R 226 (233)
T ss_dssp C
T ss_pred H
Confidence 3
No 60
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.72 E-value=2.5e-18 Score=167.13 Aligned_cols=98 Identities=35% Similarity=0.681 Sum_probs=83.9
Q ss_pred cccccCCCCccccccCCceEEeeccccCCceEEccCcccc--chHHHHhhcccccccCCCCC-CCceeecCCCCCCcccc
Q 001066 498 WLGRLLGPINDRYGIAGTWVHQHCAVWSPEVYFAGLGCLK--NIRAALCRGRALKCTRCGRP-GATIGCRVDRCPRTYHL 574 (1167)
Q Consensus 498 ~~g~~lg~~~~k~t~~g~WvH~~CAlw~pev~~~~~~~l~--~i~~~~~~~~~~~C~iC~~~-GA~I~C~~~~C~~~FH~ 574 (1167)
.+|+..|+++++ |.++.|||++||+|+|++.|.+...+. ++..+...+++++|.+|++. |++|+|...+|.++||+
T Consensus 4 ~lC~~~~Galk~-t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~fH~ 82 (110)
T PF13832_consen 4 VLCPKRGGALKR-TSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLKCSICGKSGGACIKCSHPGCSTAFHP 82 (110)
T ss_pred EeCCCCCCcccC-ccCCcEEEeEccceeCccEEeechhcCcccceeecchhcCCcCcCCCCCCceeEEcCCCCCCcCCCH
Confidence 356667777766 557999999999999999999866644 46677788899999999975 99999999999999999
Q ss_pred cccCCCcceecc------ccceeccccc
Q 001066 575 PCARANGCIFDH------RKFLIACTDH 596 (1167)
Q Consensus 575 ~CA~~~g~~~~~------~~~~~~C~~H 596 (1167)
+||+.+|+.++. ..+.+||++|
T Consensus 83 ~CA~~~g~~~~~~~~~~~~~~~~~C~~H 110 (110)
T PF13832_consen 83 TCARKAGLYFEIENEEDNVQFIAYCPKH 110 (110)
T ss_pred HHHHHCCCeEEeeecCCCceEEEECCCC
Confidence 999999999944 3589999998
No 61
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=9.5e-17 Score=199.27 Aligned_cols=168 Identities=30% Similarity=0.413 Sum_probs=126.5
Q ss_pred cccccCh-HHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc-----eEEEEecc
Q 001066 685 FESVAGL-QDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR-----IAYFARKG 758 (1167)
Q Consensus 685 ~ddL~Gl-e~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~-----i~~~~l~~ 758 (1167)
+++++|. ++.++++.+++.. ..+++.+|+|.||+|||.++..+|+.+..+... ..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 6788887 7777777777644 445789999999999999999999998765422 23444444
Q ss_pred ccc--chhhhchHHHHHHHHHHHHH-hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADC--LGKYVGDAERQLRLLFQVAE-KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~l--ls~~~g~~e~~L~~lF~~A~-~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
..+ -.++.++++.+++.+..++. .....||||||++.+.+.+...+ .....++|.....++.+-+||||+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-------~~d~~nlLkp~L~rg~l~~IGatT 324 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-------AIDAANLLKPLLARGGLWCIGATT 324 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-------HHHHHHhhHHHHhcCCeEEEeccc
Confidence 433 36788999999999999988 44678999999999987544311 223445555555677799999987
Q ss_pred CCC-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccC
Q 001066 836 RPE-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW 875 (1167)
Q Consensus 836 ~~d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~ 875 (1167)
.-. +-+|+|-+ || ..+.++.|+.++...||+.....|
T Consensus 325 ~e~Y~k~iekdPalEr--rw-~l~~v~~pS~~~~~~iL~~l~~~~ 366 (898)
T KOG1051|consen 325 LETYRKCIEKDPALER--RW-QLVLVPIPSVENLSLILPGLSERY 366 (898)
T ss_pred HHHHHHHHhhCcchhh--Cc-ceeEeccCcccchhhhhhhhhhhh
Confidence 422 45899998 88 678899999999888998877664
No 62
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=99.69 E-value=9.2e-18 Score=157.27 Aligned_cols=80 Identities=44% Similarity=1.029 Sum_probs=75.8
Q ss_pred EeeccccCCceEEccCc-----cccchHHHHhhcccccccCCCCC-CCceeecCCCCCCcccccccCCCcceeccc----
Q 001066 518 HQHCAVWSPEVYFAGLG-----CLKNIRAALCRGRALKCTRCGRP-GATIGCRVDRCPRTYHLPCARANGCIFDHR---- 587 (1167)
Q Consensus 518 H~~CAlw~pev~~~~~~-----~l~~i~~~~~~~~~~~C~iC~~~-GA~I~C~~~~C~~~FH~~CA~~~g~~~~~~---- 587 (1167)
|++||||+|+|++.+.. .+.+|..++.++++++|++|+++ ||+|+|...+|.++||++||+.+|+.+++.
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~~~ 80 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCFIEFDEDNG 80 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeEEEEccCCC
Confidence 89999999999998864 58899999999999999999999 999999999999999999999999999776
Q ss_pred cceecccccc
Q 001066 588 KFLIACTDHR 597 (1167)
Q Consensus 588 ~~~~~C~~Hr 597 (1167)
.+.+||++|+
T Consensus 81 ~~~~~C~~H~ 90 (90)
T PF13771_consen 81 KFRIFCPKHS 90 (90)
T ss_pred ceEEEChhcC
Confidence 8999999996
No 63
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.3e-16 Score=175.63 Aligned_cols=188 Identities=26% Similarity=0.345 Sum_probs=153.1
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccC-CCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC----CCceEEEEeccc
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLG-LTPPRGVLLHGHPGTGKTLVVRALIGSCARG----DKRIAYFARKGA 759 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lg-l~~~~~VLL~GPpGTGKTtLAraLA~~l~~~----~~~i~~~~l~~~ 759 (1167)
|+.|+--..+|+++..++...+...+.--+.. +..++-||||||||||||+|.+|+|+.+.-. .....++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 77777777888998888766555444322222 3456779999999999999999999998542 334567889999
Q ss_pred ccchhhhchHHHHHHHHHHHHHhc-----CCcEEEEcCCCCcCccc----CcccccchHHHHHHHHHHhhcccCCCceEE
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKC-----QPSIIFFDEIDGLAPCR----TRQQDQTHSSVVSTLLALMDGLKSRGSVVV 830 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~-----~psILfIDEID~L~~~~----~~~~~~~~~~vl~~LL~lLd~l~~~~~ViV 830 (1167)
.++++|++++.+.+..+|+..... .-..++|||++.|..+| +.+.+...-++++++|..||.+...++|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999876531 22356799999998765 334556677999999999999999999999
Q ss_pred EccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc
Q 001066 831 IGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 831 IaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
++|+|-.+.+|.|+.. |-+-+.++.+|+...+.+|++..+..
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999987653
No 64
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.2e-16 Score=176.10 Aligned_cols=214 Identities=28% Similarity=0.422 Sum_probs=148.3
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG 763 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls 763 (1167)
.|++++-......+|.++...- .+. ...-.+-++||||||||||||++|+.||...+ +.|-.+.+.+..
T Consensus 353 pl~~ViL~psLe~Rie~lA~aT-aNT----K~h~apfRNilfyGPPGTGKTm~ArelAr~SG-----lDYA~mTGGDVA- 421 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIAT-ANT----KKHQAPFRNILFYGPPGTGKTMFARELARHSG-----LDYAIMTGGDVA- 421 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHh-ccc----ccccchhhheeeeCCCCCCchHHHHHHHhhcC-----CceehhcCCCcc-
Confidence 3566666666666666654321 111 11224557899999999999999999999987 455444444432
Q ss_pred hhhchHHHHHHHHHHHHHhcCC-cEEEEcCCCCcCcccCccc-ccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCC
Q 001066 764 KYVGDAERQLRLLFQVAEKCQP-SIIFFDEIDGLAPCRTRQQ-DQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVD 841 (1167)
Q Consensus 764 ~~~g~~e~~L~~lF~~A~~~~p-sILfIDEID~L~~~~~~~~-~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld 841 (1167)
..-.+....|..+|+-++++.. -+|||||.|.++..+.... +......++.|| +..-.....|+++.+||+|..+|
T Consensus 422 PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlL--fRTGdqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 422 PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL--FRTGDQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHH--HHhcccccceEEEeccCCccchh
Confidence 2223456778999999988654 4789999999987554332 112223333333 11112334688888999999999
Q ss_pred cccCCCCCcccccccCCCCHHHHHHHHHHhhccCCC--------------------------CCChhHHHHHHHHccCCc
Q 001066 842 PALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPK--------------------------PVTGSLLKWIAARTAGFA 895 (1167)
Q Consensus 842 ~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~--------------------------~l~d~~L~~LA~~t~G~s 895 (1167)
.++.. ||+..|+||+|..++|..||..|+.+|-. ...+..+...|..|.||+
T Consensus 500 sAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfS 577 (630)
T KOG0742|consen 500 SAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFS 577 (630)
T ss_pred HHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCc
Confidence 99998 99999999999999999999998876421 123456788999999999
Q ss_pred HHHHHHHHH--HHHHHHHH
Q 001066 896 GADLQALCT--QAAIIALK 912 (1167)
Q Consensus 896 ~aDL~~Lv~--~A~~~A~~ 912 (1167)
+++|..|+. +|..|+..
T Consensus 578 GREiakLva~vQAavYgse 596 (630)
T KOG0742|consen 578 GREIAKLVASVQAAVYGSE 596 (630)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 999998876 44444433
No 65
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.67 E-value=1.8e-15 Score=181.28 Aligned_cols=109 Identities=16% Similarity=0.255 Sum_probs=79.3
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHH
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMED 863 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eE 863 (1167)
.|+|++|.|+|.+... . .+...|.++...+...++.+||.+.+ ..+++.|.+ +-..+.+|.|+.+|
T Consensus 81 ~~~~~vl~d~h~~~~~------~---~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND------I---SISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc------h---HHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 3789999999998731 1 23333444333333344444444432 356677764 44788999999999
Q ss_pred HHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 864 RAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 864 R~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
+.++|+.+.......+++..++.|+..+.|++..+++.++..+
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~ 189 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKI 189 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999998887667778889999999999999999999888764
No 66
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.64 E-value=4.2e-15 Score=162.21 Aligned_cols=198 Identities=21% Similarity=0.251 Sum_probs=153.7
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..|++.+|+++++.+|.=++...... -....++||+||||.||||||+.||++++ +++-...++.+-
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emg-----vn~k~tsGp~le 89 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELG-----VNLKITSGPALE 89 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhc-----CCeEeccccccc
Confidence 47899999999999998777553221 24456999999999999999999999998 444444444332
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc----------------CCC
Q 001066 763 GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK----------------SRG 826 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~----------------~~~ 826 (1167)
. .++ +..++.. .....||||||||+|.+ .+-..|+..|+.+. .-+
T Consensus 90 K--~gD----laaiLt~--Le~~DVLFIDEIHrl~~-----------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 90 K--PGD----LAAILTN--LEEGDVLFIDEIHRLSP-----------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred C--hhh----HHHHHhc--CCcCCeEEEehhhhcCh-----------hHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 1 122 2222222 23568999999999986 44455667776531 124
Q ss_pred ceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 827 SVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 827 ~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
.+.+||+|++...|...|+. ||....++..++.++..+|+......+...+++.....||.++.| ||+--..|+++.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 58999999999999999998 999999999999999999999999989999999999999999987 788777888888
Q ss_pred HHHHHHcCC
Q 001066 907 AIIALKRNF 915 (1167)
Q Consensus 907 ~~~A~~R~i 915 (1167)
.-+|.-++.
T Consensus 228 RDfa~V~~~ 236 (332)
T COG2255 228 RDFAQVKGD 236 (332)
T ss_pred HHHHHHhcC
Confidence 888876553
No 67
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63 E-value=2.4e-15 Score=170.84 Aligned_cols=177 Identities=26% Similarity=0.385 Sum_probs=132.5
Q ss_pred cCcccccChHHHH---HHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 683 EGFESVAGLQDVI---RCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 683 ~~~ddL~Gle~~k---~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+|++++|++... .-|..+|.. ....+++|||||||||||||+.||...+ ..|..+++.
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~-----~~f~~~sAv 82 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTN-----AAFEALSAV 82 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhC-----CceEEeccc
Confidence 4789999998876 334444432 3456899999999999999999999887 455555442
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcC----CcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccC-
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQ----PSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT- 834 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~----psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT- 834 (1167)
....+.++.+|+.|+... ..||||||||++.. ..+..||..|+ ++.|++||+|
T Consensus 83 -------~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK-----------~QQD~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 83 -------TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK-----------AQQDALLPHVE----NGTIILIGATT 140 (436)
T ss_pred -------cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh-----------hhhhhhhhhhc----CCeEEEEeccC
Confidence 223466788888885433 58999999999975 34456776665 6788999887
Q ss_pred -CCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc--CC-----CCCChhHHHHHHHHccCCcHHHHHHH
Q 001066 835 -NRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER--WP-----KPVTGSLLKWIAARTAGFAGADLQAL 902 (1167)
Q Consensus 835 -N~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~--~~-----~~l~d~~L~~LA~~t~G~s~aDL~~L 902 (1167)
|..-.|+++|++ |. +++.|.+.+.++..++|+..+.. .+ ..+++..+..|+..+.|...+.|..|
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~L 213 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLL 213 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHH
Confidence 445689999999 88 78899999999999999884332 22 23678899999999998777666544
No 68
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=1.1e-14 Score=165.40 Aligned_cols=194 Identities=20% Similarity=0.236 Sum_probs=139.6
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG 763 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls 763 (1167)
+|++++|++++++.|..++..... .-..+.++||+||||||||+||+++|+.++. .+..........
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-----~~~~~~~~~~~~ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGV-----NLKITSGPALEK 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeccchhcC
Confidence 689999999999999888754211 1133567999999999999999999999873 222222211110
Q ss_pred hhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc----------------CCCc
Q 001066 764 KYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK----------------SRGS 827 (1167)
Q Consensus 764 ~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~----------------~~~~ 827 (1167)
. ..+...+.. ...+.|||||||+.+.. .....|+..|+... ....
T Consensus 69 --~----~~l~~~l~~--~~~~~vl~iDEi~~l~~-----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 129 (305)
T TIGR00635 69 --P----GDLAAILTN--LEEGDVLFIDEIHRLSP-----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPP 129 (305)
T ss_pred --c----hhHHHHHHh--cccCCEEEEehHhhhCH-----------HHHHHhhHHHhhhheeeeeccCccccceeecCCC
Confidence 1 112222222 23578999999999874 23334555554321 1234
Q ss_pred eEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHH
Q 001066 828 VVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAA 907 (1167)
Q Consensus 828 ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~ 907 (1167)
+++|++|+.+..+++++++ ||...+.|++|+.+++.+||+..+......+++..+..|+..+.|+. +.+..++..+.
T Consensus 130 ~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred eEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 7889999999999999988 99888999999999999999999887777888999999999998855 55677777776
Q ss_pred HHHHH
Q 001066 908 IIALK 912 (1167)
Q Consensus 908 ~~A~~ 912 (1167)
..|..
T Consensus 207 ~~a~~ 211 (305)
T TIGR00635 207 DFAQV 211 (305)
T ss_pred HHHHH
Confidence 66543
No 69
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=1.3e-14 Score=166.96 Aligned_cols=196 Identities=20% Similarity=0.232 Sum_probs=143.1
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|.++.++.+..++..... .-.++.++||+||||||||++|+++|+.++. .+.......+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-----~~~~~~~~~~~ 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGV-----NIRITSGPALE 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCC-----CeEEEeccccc
Confidence 3799999999999999888754211 1134578999999999999999999999873 23333222111
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc----------------CCC
Q 001066 763 GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK----------------SRG 826 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~----------------~~~ 826 (1167)
....+..++... ..+.||||||||.+.. .+...|+..|+... .-.
T Consensus 89 ------~~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 89 ------KPGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred ------ChHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 112233333322 3578999999999864 22233444444321 113
Q ss_pred ceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 827 SVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 827 ~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
.+.+|++|+.+..++++|++ ||...+.|++|+.+++.+||+..+......+++..+..|+.++.| +++.+..++.++
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHH
Confidence 47889999999999999988 998899999999999999999999888888899999999999987 457777777777
Q ss_pred HHHHHHc
Q 001066 907 AIIALKR 913 (1167)
Q Consensus 907 ~~~A~~R 913 (1167)
...|..+
T Consensus 227 ~~~a~~~ 233 (328)
T PRK00080 227 RDFAQVK 233 (328)
T ss_pred HHHHHHc
Confidence 7666543
No 70
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.59 E-value=1.7e-14 Score=175.71 Aligned_cols=202 Identities=23% Similarity=0.368 Sum_probs=142.7
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEec
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARK 757 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~ 757 (1167)
.+|++|+|.+..++.++..+.. +.+.++||+||||||||++|++++..+..+. ...+|+.++
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 5799999999999998866432 3456899999999999999999987654321 134677776
Q ss_pred cccc-------chhhhchHHHHH---HHHH----------HHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHH
Q 001066 758 GADC-------LGKYVGDAERQL---RLLF----------QVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLA 817 (1167)
Q Consensus 758 ~~~l-------ls~~~g~~e~~L---~~lF----------~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~ 817 (1167)
+... ....++.....+ ...| ........++||||||+.|.. ..++.|+.
T Consensus 129 ~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~-----------~~q~~LL~ 197 (531)
T TIGR02902 129 ATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP-----------VQMNKLLK 197 (531)
T ss_pred cccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH-----------HHHHHHHH
Confidence 6421 001111000000 0000 011123458999999999975 56677777
Q ss_pred Hhhccc--------------------------CCCc-eEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHH
Q 001066 818 LMDGLK--------------------------SRGS-VVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSL 870 (1167)
Q Consensus 818 lLd~l~--------------------------~~~~-ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~ 870 (1167)
.|+... .... .+|++||+.++.+++++++ |+ ..|.|++++.+++.+|++.
T Consensus 198 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~ 274 (531)
T TIGR02902 198 VLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKN 274 (531)
T ss_pred HHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHH
Confidence 775310 0112 3445566789999999998 88 6889999999999999999
Q ss_pred hhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 001066 871 HTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR 913 (1167)
Q Consensus 871 ~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R 913 (1167)
.+......+++..++.|+.++. +.+++.++++.|+..|..+
T Consensus 275 ~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~ 315 (531)
T TIGR02902 275 AAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE 315 (531)
T ss_pred HHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC
Confidence 9998888888888998888764 7899999999998877654
No 71
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.59 E-value=1.3e-14 Score=184.02 Aligned_cols=196 Identities=19% Similarity=0.211 Sum_probs=135.5
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc------
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD------ 760 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~------ 760 (1167)
+++|++++++.+.+++..+... +-....++||+||||||||++|++||..++. +|+.++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-----~~~~i~~~~~~~~~~ 388 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNR-----KFVRFSLGGVRDEAE 388 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcC-----CeEEEeCCCcccHHH
Confidence 5899999999999987653221 1123347999999999999999999999874 344332221
Q ss_pred c---chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc-----cc--------C
Q 001066 761 C---LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG-----LK--------S 824 (1167)
Q Consensus 761 l---ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~-----l~--------~ 824 (1167)
+ ...|.|.....+...|..+....| ||||||||.+..... + ...+.|+..|+. +. .
T Consensus 389 i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~--~-----~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 389 IRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR--G-----DPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred HcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC--C-----CHHHHHHHhcCHHhcCccccccCCceec
Confidence 1 134666666677777877765455 899999999985211 1 123456666653 11 1
Q ss_pred CCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhc-----c-----CCCCCChhHHHHHHHHc-cC
Q 001066 825 RGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTE-----R-----WPKPVTGSLLKWIAART-AG 893 (1167)
Q Consensus 825 ~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~-----~-----~~~~l~d~~L~~LA~~t-~G 893 (1167)
..+++||+|||.++.++++|++ || ..|.|+.|+.+++.+|++.++. . ....+++..+..|+... ..
T Consensus 461 ~s~v~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e 537 (775)
T TIGR00763 461 LSKVIFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTRE 537 (775)
T ss_pred cCCEEEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChh
Confidence 2468999999999999999998 99 5899999999999999987652 1 12346777787777633 23
Q ss_pred CcHHHHHHHHHH
Q 001066 894 FAGADLQALCTQ 905 (1167)
Q Consensus 894 ~s~aDL~~Lv~~ 905 (1167)
+..+.|+.++..
T Consensus 538 ~g~R~l~r~i~~ 549 (775)
T TIGR00763 538 AGVRNLERQIEK 549 (775)
T ss_pred cCChHHHHHHHH
Confidence 344555544443
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.1e-14 Score=166.16 Aligned_cols=190 Identities=17% Similarity=0.171 Sum_probs=140.3
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|++.++..|..++... ..+..+||+||+|||||++|+.+|+.+.....
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 47999999999999998887641 23356899999999999999999999875321
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.++...- .....++.+...+. .....|+||||+|.|.. ..++.||..|
T Consensus 83 ~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NALLKtL 145 (484)
T PRK14956 83 EITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNALLKTL 145 (484)
T ss_pred HHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHHHHHh
Confidence 012222222111 01122344333332 23457999999999974 5677888888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+. +...+++|.+|+.+..|.+.+++ |+ +.+.|..++.++..++|+..+...+..+++..+..|+..+.|.. ++.
T Consensus 146 EE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~-RdA 219 (484)
T PRK14956 146 EE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSV-RDM 219 (484)
T ss_pred hc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChH-HHH
Confidence 75 34578888899889999999998 98 78999999999999999999888888889999999999998854 444
Q ss_pred HHHHHHHH
Q 001066 900 QALCTQAA 907 (1167)
Q Consensus 900 ~~Lv~~A~ 907 (1167)
-+++.++.
T Consensus 220 L~lLeq~i 227 (484)
T PRK14956 220 LSFMEQAI 227 (484)
T ss_pred HHHHHHHH
Confidence 45555544
No 73
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1e-13 Score=169.53 Aligned_cols=192 Identities=18% Similarity=0.212 Sum_probs=142.7
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|++.+++.|..++.. + ..++.+||+||+|||||++++.||+.+.....
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~-----------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG-----------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 4799999999999999988754 1 23456799999999999999999998864210
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.++..+. . ....++.+++.+.. ....||||||+|.|.. ...+.||..|
T Consensus 81 ~I~~G~h~DviEIDAas~--r----gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NALLKtL 143 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASN--R----GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAMLKTL 143 (830)
T ss_pred HHhcCCCceEEEeccccc--c----cHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHHHHHH
Confidence 112344433211 1 11234444444332 3457999999999964 4567788888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. ..+++||.+||.+..|.+.|++ |+ ..|.|..++.++..++|+.++...+..+++..+..|++.+.|.....|
T Consensus 144 EEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdAL 218 (830)
T PRK07003 144 EEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDAL 218 (830)
T ss_pred Hhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 754 3467888899999999999998 99 899999999999999999999888888889999999999998654444
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
+++.++..+
T Consensus 219 -sLLdQAia~ 227 (830)
T PRK07003 219 -SLTDQAIAY 227 (830)
T ss_pred -HHHHHHHHh
Confidence 555555543
No 74
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.53 E-value=4.6e-13 Score=158.39 Aligned_cols=215 Identities=16% Similarity=0.212 Sum_probs=143.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~ 799 (1167)
..+++||||+|+|||+|++++++++........++.+++.+++..+...........|..... .+.+|+||||+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCC
Confidence 457999999999999999999999865433355666666666554433322111112222222 4689999999988652
Q ss_pred cCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCc---CCcccCCCCCcc--cccccCCCCHHHHHHHHHHhhcc
Q 001066 800 RTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEA---VDPALRRPGRFD--REIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 800 ~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~---Ld~aLlrpgRF~--~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
. ..+..|+.+++.+...+..+||+++..|.. +++.|.+ ||. ..+.|++|+.++|..||+..+..
T Consensus 215 ~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred H---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 233456666666655556667766666654 5678887 885 47899999999999999999998
Q ss_pred CCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhc
Q 001066 875 WPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN--FPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSC 952 (1167)
Q Consensus 875 ~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~--i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~ 952 (1167)
.+..+++..+..||.+..+ +.++|..++.+...+|...+ ++...+.. ...... ......++..++..+++.
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~~~it~~~~~~-~L~~~~-----~~~~~~it~~~I~~~Va~ 356 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTGKPITLELAKE-ALKDLL-----RAKKKEITIENIQEVVAK 356 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCCCCCHHHHHH-HHHHhc-----cccCCCCCHHHHHHHHHH
Confidence 8888899999999998876 66778877777666664433 33322221 111111 112235888888888875
Q ss_pred C
Q 001066 953 S 953 (1167)
Q Consensus 953 ~ 953 (1167)
.
T Consensus 357 ~ 357 (405)
T TIGR00362 357 Y 357 (405)
T ss_pred H
Confidence 4
No 75
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.52 E-value=3.7e-13 Score=161.26 Aligned_cols=215 Identities=16% Similarity=0.209 Sum_probs=147.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~ 799 (1167)
.++++||||||+|||+|++++++++........++.+++..++..+...........|..... .+.+|+||||+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 357999999999999999999999876544456677777776655544433222223333222 5789999999998652
Q ss_pred cCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCc---CCcccCCCCCcc--cccccCCCCHHHHHHHHHHhhcc
Q 001066 800 RTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEA---VDPALRRPGRFD--REIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 800 ~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~---Ld~aLlrpgRF~--~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
. ..+..|+..++.+...+..+||+++..|.. +++.|.+ ||. ..+.|.+|+.++|.+||+..+..
T Consensus 227 ~---------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1 234466777766655566677766666655 5688888 885 47899999999999999999988
Q ss_pred CCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhc
Q 001066 875 WPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN--FPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSC 952 (1167)
Q Consensus 875 ~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~--i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~ 952 (1167)
.+..+++..+..||.++.+ +.+.|..++.....++...+ ++...+.. ...... ......++.+++..++++
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~~~it~~~~~~-~l~~~~-----~~~~~~~~~~~i~~~v~~ 368 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTGKPITLELAKE-ALKDLL-----AAQKKKITIENIQKVVAE 368 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhCCCCCHHHHHH-HHHHhh-----ccCCCCCCHHHHHHHHHH
Confidence 7788899999999999886 66677777776666554433 33322221 111110 112345788888888775
Q ss_pred C
Q 001066 953 S 953 (1167)
Q Consensus 953 ~ 953 (1167)
.
T Consensus 369 ~ 369 (450)
T PRK00149 369 Y 369 (450)
T ss_pred H
Confidence 4
No 76
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.4e-13 Score=165.31 Aligned_cols=294 Identities=19% Similarity=0.195 Sum_probs=176.3
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe-cccccc--
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR-KGADCL-- 762 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l-~~~~ll-- 762 (1167)
.+-.|++++++++.+++.-.... .-....-++|+||||+|||+|++.||..+++.+.++.+=-+ +-+++-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 36799999999999998652221 11123457789999999999999999999964433322111 112222
Q ss_pred -hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc-------------cCCCce
Q 001066 763 -GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL-------------KSRGSV 828 (1167)
Q Consensus 763 -s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l-------------~~~~~V 828 (1167)
..|+|....++-+.+..|....| +++|||||.+..+. .+++. ++||..||.- ..-..|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~--rGDPa-----SALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF--RGDPA-----SALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC--CCChH-----HHHHhhcCHhhcCchhhccccCccchhhe
Confidence 45888888888888888877666 88899999998632 22222 3667666642 122469
Q ss_pred EEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc-----CCCCCChhHHHHHHHHccCCcHHHHHHHH
Q 001066 829 VVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER-----WPKPVTGSLLKWIAARTAGFAGADLQALC 903 (1167)
Q Consensus 829 iVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~-----~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv 903 (1167)
+||+|+|..+.++..|+. |. .+|.++-++.+|..+|-+.|+=. .++. ... --++...|..++
T Consensus 468 mFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~--~~e--------l~i~d~ai~~iI 534 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLK--KGE--------LTITDEAIKDII 534 (782)
T ss_pred EEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCC--ccc--------eeecHHHHHHHH
Confidence 999999999999999998 99 89999999999999999887632 1111 000 013333333333
Q ss_pred HHHHHHHHHcCCC--hHHHHHHHHHHhhccccccCCc-cccCHHHHHHHhhcCCCCCC--cc------cccccccccccC
Q 001066 904 TQAAIIALKRNFP--LQEILSAAAEKAFCSKRVTLPS-FAVEERDWLEALSCSPPPCS--KR------EAGIAAHDLVSS 972 (1167)
Q Consensus 904 ~~A~~~A~~R~i~--~~di~~~~e~~~~~~~~~~l~~-i~It~~D~~~AL~~~~P~~S--~r------e~~~a~~d~~~a 972 (1167)
+.-...|--|++. ...+.......... ..... +.++..++.+-|...+-..- .. -.+++|..+.|.
T Consensus 535 ~~YTREAGVR~LeR~i~ki~RK~~~~i~~---~~~k~~~~i~~~~l~~yLG~~~f~~~~~~~~~~vGvVtGLAWT~vGGd 611 (782)
T COG0466 535 RYYTREAGVRNLEREIAKICRKAAKKILL---KKEKSIVKIDEKNLKKYLGVPVFRYGKAEEEDQVGVVTGLAWTEVGGD 611 (782)
T ss_pred HHHhHhhhhhHHHHHHHHHHHHHHHHHHh---cCcccceeeCHHHHHHHhCCcccCccccccCCCCeeEeeeeeecCCce
Confidence 3322222222211 00111111111111 11112 46777777777764332111 11 117788777776
Q ss_pred CCCCCccccccchhhhhhhhhhhhccccCCcchhHHHHHHHHHHHhhhhh
Q 001066 973 PLPSHLIPCLLQPLSTLLVSLYLDERLWLPPSLTKATKMIQSVIVSALDK 1022 (1167)
Q Consensus 973 ~L~~~iip~v~w~l~~l~~~~~l~E~l~L~~~~~~~~~~i~~~i~~~l~~ 1022 (1167)
.|+-. .+..+= -..+.++.++.+.+.+-..+..+.+..
T Consensus 612 ~L~IE---~~~~~G---------kg~l~lTG~LGdVMKESa~~A~s~vrs 649 (782)
T COG0466 612 LLTIE---AVKMPG---------KGKLTLTGSLGDVMKESAQAALSYVRS 649 (782)
T ss_pred EEEEE---EEEecC---------CccEEEeccHHHHHHHHHHHHHHHHHH
Confidence 66431 111120 115778888888887766666554433
No 77
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.2e-13 Score=167.27 Aligned_cols=191 Identities=19% Similarity=0.208 Sum_probs=140.8
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|++.+++.|..++... ..++.+||+||+|+|||++|+.||+.+.....
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 47999999999999999988651 23456899999999999999999999875210
Q ss_pred -----------ceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHH
Q 001066 750 -----------RIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVST 814 (1167)
Q Consensus 750 -----------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~ 814 (1167)
...++.++.... ..+ ..++.+++.+. .....|+||||+|.|.. ...+.
T Consensus 81 C~sC~~I~aG~hpDviEIdAas~--~gV----DdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~AaNA 143 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAASN--RGV----DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------HAFNA 143 (700)
T ss_pred cHHHHHHHcCCCCcceEeccccc--CCH----HHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------HHHHH
Confidence 012333333211 112 23344443332 33457999999999964 55678
Q ss_pred HHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCC
Q 001066 815 LLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGF 894 (1167)
Q Consensus 815 LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~ 894 (1167)
||..|+.. ..+++||.+|+.+..|.+.|++ |+ +.+.|..++.++..+.|+.++...+..+++..+..|+..+.|
T Consensus 144 LLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G- 217 (700)
T PRK12323 144 MLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG- 217 (700)
T ss_pred HHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888753 4567888889999999999998 98 899999999999999999888777777788888999998887
Q ss_pred cHHHHHHHHHHHHH
Q 001066 895 AGADLQALCTQAAI 908 (1167)
Q Consensus 895 s~aDL~~Lv~~A~~ 908 (1167)
+.++..+++.++..
T Consensus 218 s~RdALsLLdQaia 231 (700)
T PRK12323 218 SMRDALSLTDQAIA 231 (700)
T ss_pred CHHHHHHHHHHHHH
Confidence 45555556555543
No 78
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.51 E-value=4.7e-13 Score=163.85 Aligned_cols=203 Identities=22% Similarity=0.256 Sum_probs=134.1
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC-----CCceEEEEecccc
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG-----DKRIAYFARKGAD 760 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~-----~~~i~~~~l~~~~ 760 (1167)
+.|.|.++.++.|..+|...+. +..+...++|+|+||||||++++.+..++... ...+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 5689999999999998865322 11223335799999999999999998877421 1236677787754
Q ss_pred cchhh------h----------c-hHHHHHHHHHHHHHh--cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc
Q 001066 761 CLGKY------V----------G-DAERQLRLLFQVAEK--CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG 821 (1167)
Q Consensus 761 lls~~------~----------g-~~e~~L~~lF~~A~~--~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~ 821 (1167)
+...+ . + .....+..+|..... ....||+|||||.|... ...++..|+++..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK--------~QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK--------TQKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc--------HHHHHHHHHHHhh-
Confidence 32111 0 0 122345556655422 23569999999999852 1244444444432
Q ss_pred ccCCCceEEEccCCC---CCcCCcccCCCCCccc-ccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHcc---CC
Q 001066 822 LKSRGSVVVIGATNR---PEAVDPALRRPGRFDR-EIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTA---GF 894 (1167)
Q Consensus 822 l~~~~~ViVIaTTN~---~d~Ld~aLlrpgRF~~-~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~---G~ 894 (1167)
.....++|||++|. ++.|++.+++ ||.. .|.|++|+.+++.+||+..+......+++..+..+|+.++ |.
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGD 974 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGD 974 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCH
Confidence 23457899999986 4566788887 7643 4899999999999999999886555678888999998555 33
Q ss_pred cHHHHHHHHHHHHHH
Q 001066 895 AGADLQALCTQAAII 909 (1167)
Q Consensus 895 s~aDL~~Lv~~A~~~ 909 (1167)
...+| .+|+.|+..
T Consensus 975 ARKAL-DILRrAgEi 988 (1164)
T PTZ00112 975 IRKAL-QICRKAFEN 988 (1164)
T ss_pred HHHHH-HHHHHHHhh
Confidence 33332 444555543
No 79
>PLN03025 replication factor C subunit; Provisional
Probab=99.51 E-value=3e-13 Score=155.07 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=133.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|.++++..|+.++.. ....++||+||||||||++|+++|+.+........++.++.++..
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~ 76 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR 76 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc
Confidence 4799999999999999887643 122469999999999999999999998543322345555554432
Q ss_pred hhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC
Q 001066 763 GKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE 838 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d 838 (1167)
+. ......++. |.... .....||+|||+|.+.. ..++.|+..|+..... ..+|.++|...
T Consensus 77 ~~--~~vr~~i~~-~~~~~~~~~~~~~kviiiDE~d~lt~-----------~aq~aL~~~lE~~~~~--t~~il~~n~~~ 140 (319)
T PLN03025 77 GI--DVVRNKIKM-FAQKKVTLPPGRHKIVILDEADSMTS-----------GAQQALRRTMEIYSNT--TRFALACNTSS 140 (319)
T ss_pred cH--HHHHHHHHH-HHhccccCCCCCeEEEEEechhhcCH-----------HHHHHHHHHHhcccCC--ceEEEEeCCcc
Confidence 21 111112221 11111 12357999999999874 4456777888754333 34555778888
Q ss_pred cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHH
Q 001066 839 AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQAL 902 (1167)
Q Consensus 839 ~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~L 902 (1167)
.+.++|++ |+ ..+.|+.|+.++...+|+..+...+..+++..+..|+..+.|.....+..|
T Consensus 141 ~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 141 KIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred ccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88889988 87 689999999999999999999888888899999999998887554444333
No 80
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4e-13 Score=160.29 Aligned_cols=170 Identities=24% Similarity=0.301 Sum_probs=125.3
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe-cccccc--
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR-KGADCL-- 762 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l-~~~~ll-- 762 (1167)
+|-.|++++|+++.++|.-.... |-.....+.|+||||+|||++++.||..+++.+.++.+=-+ +-+++-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 47799999999999998653221 22334567799999999999999999999965433222111 112222
Q ss_pred -hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc-------------cCCCce
Q 001066 763 -GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL-------------KSRGSV 828 (1167)
Q Consensus 763 -s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l-------------~~~~~V 828 (1167)
..|+|.+..++-+.+....-..| +++|||||.|.. .-.++.. ++||.+||.- ..-.+|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~qGDPa-----sALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQGDPA-----SALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCCCChH-----HHHHHhcChhhccchhhhccccccchhhe
Confidence 35888888888888877766555 888999999983 2223222 3566666642 123479
Q ss_pred EEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhc
Q 001066 829 VVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTE 873 (1167)
Q Consensus 829 iVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~ 873 (1167)
+||||+|..+.++++|+. |. ..|+++-+..+|...|-+.|+-
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 999999999999999998 99 8999999999999999998764
No 81
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.8e-13 Score=162.39 Aligned_cols=186 Identities=23% Similarity=0.222 Sum_probs=135.3
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++++|++.+++.|..++... ..+.++||+||||||||++|+++|+.+.....
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 47999999999999888877542 23456899999999999999999998764211
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.+++... . ....++.+...+.. ....||||||+|.|.. ..+..|+..|
T Consensus 79 ~i~~g~~~dv~el~aa~~----~--gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~LLk~L 141 (472)
T PRK14962 79 SIDEGTFMDVIELDAASN----R--GIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNALLKTL 141 (472)
T ss_pred HHhcCCCCccEEEeCccc----C--CHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHHHHHH
Confidence 112333333211 1 11234444444332 2356999999998863 4456778777
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. .+.+++|++|+.+..++++|++ |+ ..+.|.+|+.++...+++..+...+..+++..+..|+..+.|.....+
T Consensus 142 E~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~al 216 (472)
T PRK14962 142 EEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDAL 216 (472)
T ss_pred HhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 753 3457777777778889999998 88 689999999999999999998887888899999999998887555544
Q ss_pred HHH
Q 001066 900 QAL 902 (1167)
Q Consensus 900 ~~L 902 (1167)
..|
T Consensus 217 n~L 219 (472)
T PRK14962 217 TML 219 (472)
T ss_pred HHH
Confidence 433
No 82
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4.2e-13 Score=166.99 Aligned_cols=190 Identities=18% Similarity=0.220 Sum_probs=138.3
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|.+.+++.|+.++... ..+..+||+||||||||++|+++|+.+.....
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 47999999999999998887541 23455799999999999999999999875311
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.++..+. .....++.+...+. .....|+||||+|.|.. ..++.||..|
T Consensus 81 ~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-----------eAqNALLKtL 143 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-----------SSFNALLKTL 143 (944)
T ss_pred HHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-----------HHHHHHHHHH
Confidence 011122222110 01122344443332 23457999999999964 6778899888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. ...++||++|+.+..|.+.|++ |+ ..+.|..++.++...+|+.++...+..+++..+..|+..+.| ..+++
T Consensus 144 EEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~A 217 (944)
T PRK14949 144 EEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDA 217 (944)
T ss_pred hcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 864 3456677678888889999988 88 889999999999999999988776777788899999999887 45555
Q ss_pred HHHHHHHH
Q 001066 900 QALCTQAA 907 (1167)
Q Consensus 900 ~~Lv~~A~ 907 (1167)
.+++.++.
T Consensus 218 LnLLdQal 225 (944)
T PRK14949 218 LSLTDQAI 225 (944)
T ss_pred HHHHHHHH
Confidence 56666555
No 83
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=5.9e-13 Score=155.33 Aligned_cols=192 Identities=19% Similarity=0.205 Sum_probs=137.8
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|++.+++.+...+.. + ..++.+||+||||+|||++|+++|+.+.....
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4799999999999999888754 1 23456899999999999999999998853210
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.++.... .....++.++..+.. ....|+||||+|.+.. ..++.|+..|
T Consensus 81 ~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLLk~l 143 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALLKTL 143 (363)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHHHHH
Confidence 012222222110 112334555544432 2346999999998863 4556788888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+... ..+.+|.+|+.++.+.+.+++ |+ ..+.|++|+.++..++|...+...+..+++..+..|+..+.| +.+++
T Consensus 144 Ee~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~a 217 (363)
T PRK14961 144 EEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDA 217 (363)
T ss_pred hcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 7543 356666677778888889988 88 789999999999999999998887777888899999998877 55556
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+++..+..+
T Consensus 218 l~~l~~~~~~ 227 (363)
T PRK14961 218 LNLLEHAINL 227 (363)
T ss_pred HHHHHHHHHh
Confidence 6666655443
No 84
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=5.5e-13 Score=161.88 Aligned_cols=192 Identities=19% Similarity=0.206 Sum_probs=141.7
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------- 748 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------- 748 (1167)
.+|++|+|.+.+++.|..++.. + ..+..+||+||+|+|||++|+++|+.+....
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-----------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-----------G-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 4799999999999999998754 1 3346789999999999999999999986421
Q ss_pred -----CceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 749 -----KRIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 749 -----~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
....++.+++.+-. ....++.+...+. .....|+||||+|.|.. ...+.|+..|
T Consensus 80 ~I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NALLKtL 142 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNALLKTL 142 (702)
T ss_pred HHhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHHHHHH
Confidence 11233444433211 1223444444332 23457999999999864 4567788888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+... ..+.||.+|+.+..+.+.+++ |+ ..+.|..++.++..+.|...+...+..+++..+..|+..+.| +.+++
T Consensus 143 EEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdA 216 (702)
T PRK14960 143 EEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDA 216 (702)
T ss_pred hcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 8643 456677777888888888887 88 899999999999999999999888888899999999999887 55555
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+++.++..+
T Consensus 217 LnLLDQaIay 226 (702)
T PRK14960 217 LSLTDQAIAY 226 (702)
T ss_pred HHHHHHHHHh
Confidence 5666655543
No 85
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=3.3e-13 Score=163.82 Aligned_cols=215 Identities=16% Similarity=0.183 Sum_probs=145.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCccc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCR 800 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~ 800 (1167)
+.++|||++|+|||+|+++|++.+........++++.+.+++..+...........|..... .+.+|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 45999999999999999999999865333456677777777766554433322233443333 57999999999887522
Q ss_pred CcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC---cCCcccCCCCCc--ccccccCCCCHHHHHHHHHHhhccC
Q 001066 801 TRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE---AVDPALRRPGRF--DREIYFPLPSMEDRAAILSLHTERW 875 (1167)
Q Consensus 801 ~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d---~Ld~aLlrpgRF--~~~I~~~~P~~eER~eIL~~~l~~~ 875 (1167)
.....|+.+++.+...++.+||++...+. .+++.|.+ || ...+.|..|+.+.|.+||+.++...
T Consensus 394 ---------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 394 ---------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred ---------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 22345667777666655556664444444 46788988 77 5566899999999999999999988
Q ss_pred CCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 876 PKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN--FPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 876 ~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~--i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
...+++..+.+|+.+..+ +.+.|..++.+...++...+ ++.. +......... .......++.+.|..++++.
T Consensus 463 ~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~~~itl~-la~~vL~~~~----~~~~~~~it~d~I~~~Va~~ 536 (617)
T PRK14086 463 QLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNRQPVDLG-LTEIVLRDLI----PEDSAPEITAAAIMAATADY 536 (617)
T ss_pred CCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhCCCCCHH-HHHHHHHHhh----ccccCCcCCHHHHHHHHHHH
Confidence 889999999999999875 56777777776655555443 3322 2211111111 01123357888888887755
No 86
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.48 E-value=4.2e-13 Score=148.08 Aligned_cols=188 Identities=22% Similarity=0.250 Sum_probs=141.6
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhc-CCCceEEEEeccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCAR-GDKRIAYFARKGADC 761 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~-~~~~i~~~~l~~~~l 761 (1167)
.+|+++.|++.+.+.|+..+.. ....++|||||||||||+.|+++|+++.. ......+...+.++.
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 5799999999999999988743 22357999999999999999999999875 222333344444444
Q ss_pred chhhhchHHHHHHHHHHHHH---------hcCC-cEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEE
Q 001066 762 LGKYVGDAERQLRLLFQVAE---------KCQP-SIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVI 831 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~---------~~~p-sILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVI 831 (1167)
.+..+.. ..++ -|.... -++| .||+|||.|.+.. ..+.+|.+.|+... ..++||
T Consensus 100 rGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts-----------daq~aLrr~mE~~s--~~trFi 163 (346)
T KOG0989|consen 100 RGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS-----------DAQAALRRTMEDFS--RTTRFI 163 (346)
T ss_pred ccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhH-----------HHHHHHHHHHhccc--cceEEE
Confidence 4332211 1111 121111 1223 6999999999875 77889999999753 346677
Q ss_pred ccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHH
Q 001066 832 GATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQAL 902 (1167)
Q Consensus 832 aTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~L 902 (1167)
..||+.+.|...+.+ |+ ..+.|+....+.....|+.++...+..+++..+..|+..+.|.-..++--|
T Consensus 164 LIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 164 LICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred EEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 789999999999998 88 889999999999999999999999999999999999999988666655444
No 87
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=1.3e-12 Score=155.94 Aligned_cols=218 Identities=14% Similarity=0.165 Sum_probs=142.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~ 799 (1167)
.++++||||+|+|||+|++++|+.+........++++++.+++..+.......-..-|....+..+.+|+|||++.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 35699999999999999999999986544345566666666655543332211112233333446899999999988652
Q ss_pred cCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCc---CCcccCCCCCc--ccccccCCCCHHHHHHHHHHhhcc
Q 001066 800 RTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEA---VDPALRRPGRF--DREIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 800 ~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~---Ld~aLlrpgRF--~~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
. ..+..|+..++.+...+..+||++...|.. +.+.+.+ || ...+.|.+|+.+.|.+||+..+..
T Consensus 210 ~---------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 210 T---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred H---------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 1 233456666666655566677766666665 4567877 77 346789999999999999999887
Q ss_pred CCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhc
Q 001066 875 WPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN--FPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSC 952 (1167)
Q Consensus 875 ~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~--i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~ 952 (1167)
.+..+++..+..||.+..+ +.+.|..++.+...++...+ ++..... ....... ........++..++..+++.
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~~~it~~~a~-~~L~~~~---~~~~~~~~i~~~~I~~~V~~ 353 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGEEVDLKEAI-LLLKDFI---KPNRVKAMDPIDELIEIVAK 353 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhCCCCCHHHHH-HHHHHHh---ccccccCCCCHHHHHHHHHH
Confidence 7788899999999999876 66677777666555554433 3322221 1111111 00011224778888887775
Q ss_pred C
Q 001066 953 S 953 (1167)
Q Consensus 953 ~ 953 (1167)
.
T Consensus 354 ~ 354 (440)
T PRK14088 354 V 354 (440)
T ss_pred H
Confidence 5
No 88
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=7.2e-13 Score=160.32 Aligned_cols=192 Identities=18% Similarity=0.148 Sum_probs=142.2
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|.+.+++.|..++... ..+..+||+||+|||||++|+++|+.+.....
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 47999999999999999988541 23456899999999999999999998864311
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.++...- .....++.+...+.. ....|+||||+|.|.. ...+.|+..|
T Consensus 81 ~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naLLk~L 143 (509)
T PRK14958 81 EIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNALLKTL 143 (509)
T ss_pred HHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHHHHHH
Confidence 112444443321 112234444443332 3446999999999975 4567888888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+..+ ..++||.+|+.+..+.+.+++ |+ ..++|..++..+....++..+...+..+++..+..|+..+.| +.+++
T Consensus 144 Eepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~a 217 (509)
T PRK14958 144 EEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDA 217 (509)
T ss_pred hccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHH
Confidence 8653 346667677888888888988 88 788999999999999999998888888888899999998876 66677
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+++.++..+
T Consensus 218 l~lLdq~ia~ 227 (509)
T PRK14958 218 LSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHhc
Confidence 7777766544
No 89
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=8.4e-13 Score=162.15 Aligned_cols=190 Identities=19% Similarity=0.231 Sum_probs=138.6
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|.+.+++.|...+.. + ..+..+||+||+|+|||++|+.+|+.+.....
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 4799999999999999988765 1 23455799999999999999999999875311
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.++...- ..+ ..++.+...+. .....|+||||+|.|.. ..++.||..|
T Consensus 81 ~i~~g~~~D~ieidaas~--~~V----ddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NALLKtL 143 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASR--TKV----EDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLKTL 143 (647)
T ss_pred HHHcCCCCCceeeccccc--CCH----HHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHHHHHH
Confidence 112333333210 011 22344443332 23457999999999874 5678899888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. .+.++||.+|+.+..|.+.+++ |+ ..+.|..++.++....|..++...+..+++..+..|+..+.|..+..
T Consensus 144 EEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~A- 217 (647)
T PRK07994 144 EEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDA- 217 (647)
T ss_pred HcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH-
Confidence 864 3456777778888899999998 87 89999999999999999998877777778888999999988755444
Q ss_pred HHHHHHHH
Q 001066 900 QALCTQAA 907 (1167)
Q Consensus 900 ~~Lv~~A~ 907 (1167)
.+++.++.
T Consensus 218 l~lldqai 225 (647)
T PRK07994 218 LSLTDQAI 225 (647)
T ss_pred HHHHHHHH
Confidence 44555443
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.3e-12 Score=160.10 Aligned_cols=192 Identities=19% Similarity=0.224 Sum_probs=142.6
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|.+.+++.|..++... ..+..+||+||+|+|||++|+++|+.+.....
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 48999999999999999987641 33567999999999999999999998764311
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.++...- .....++.++..+.. ....||||||+|.|.. ..++.|+..|
T Consensus 81 ~i~~g~~~DvlEidaAs~------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALLKtL 143 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASN------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAMLKTL 143 (709)
T ss_pred HHhccCccceEEEecccc------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHHHHH
Confidence 112222222211 112345555554322 3457999999998753 4567788888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+... ..+.||.+|+.+..+.+.+++ |+ ..|.|+.++.++...+|..++...+..+++..+..|++.+.| +.+++
T Consensus 144 EEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdA 217 (709)
T PRK08691 144 EEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDA 217 (709)
T ss_pred HhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHH
Confidence 8643 456677788888888888887 88 789999999999999999999988888899999999998876 56667
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+++.++..+
T Consensus 218 lnLLDqaia~ 227 (709)
T PRK08691 218 LSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHh
Confidence 7777766554
No 91
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.46 E-value=7.9e-13 Score=147.59 Aligned_cols=192 Identities=22% Similarity=0.357 Sum_probs=130.7
Q ss_pred cCcccccChHHHHHH---HHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 683 EGFESVAGLQDVIRC---MKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~---L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.++++.+|++++.-+ |+.+|.. ..-.+++|+||||||||+||+.||.....+. +.|+.+.+.
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt 199 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSAT 199 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEecc
Confidence 367788888776543 2222221 3346899999999999999999998776443 445555433
Q ss_pred ccchhhhchHHHHHHHHHHHHHh-----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEK-----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~-----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
. ..-..++.+|+.+.. ....||||||||++.. ..+..||..+ ..+.|++||+|
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk-----------sQQD~fLP~V----E~G~I~lIGAT 257 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK-----------SQQDTFLPHV----ENGDITLIGAT 257 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh-----------hhhhccccee----ccCceEEEecc
Confidence 2 122456677776654 3468999999999864 2233455433 36789999888
Q ss_pred C--CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc----------CCC---CCChhHHHHHHHHccCCcHHHH
Q 001066 835 N--RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER----------WPK---PVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 835 N--~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~----------~~~---~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+ ..-.|+.+|++ |+ .++.+...+.+....||..-... ++. .+.+..+++|+..+.|.+...|
T Consensus 258 TENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 258 TENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 4 34468899998 88 67788888899999999874331 111 2456789999999999999888
Q ss_pred HHHHHHHHHHHHHcC
Q 001066 900 QALCTQAAIIALKRN 914 (1167)
Q Consensus 900 ~~Lv~~A~~~A~~R~ 914 (1167)
..|--.+.+...+.+
T Consensus 335 N~Lems~~m~~tr~g 349 (554)
T KOG2028|consen 335 NALEMSLSMFCTRSG 349 (554)
T ss_pred HHHHHHHHHHHhhcC
Confidence 777554444444444
No 92
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=7.8e-13 Score=158.24 Aligned_cols=193 Identities=19% Similarity=0.224 Sum_probs=146.1
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------- 748 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------- 748 (1167)
.+|++|+|++.+++.|..++.. + ..+.++||+||+|+|||++|+.+|+.+....
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 5899999999999999887754 2 3456899999999999999999999764321
Q ss_pred -----CceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 749 -----KRIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 749 -----~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
....++.+++.+.. ....++.+.+.+.. ....|+||||+|.|.. ..++.|+..|
T Consensus 78 ~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLLK~L 140 (491)
T PRK14964 78 SIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALLKTL 140 (491)
T ss_pred HHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHHHHH
Confidence 12344555544221 12335555555432 3456999999998864 5567888888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+... ..+++|.+|+.+..+.+.+++ |+ ..+.|..++.++...+|...+...+..+++..+..|+..+.| +.+++
T Consensus 141 EePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~a 214 (491)
T PRK14964 141 EEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNA 214 (491)
T ss_pred hCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 8643 456777777888889899988 88 789999999999999999999988888899999999999976 66667
Q ss_pred HHHHHHHHHHH
Q 001066 900 QALCTQAAIIA 910 (1167)
Q Consensus 900 ~~Lv~~A~~~A 910 (1167)
.+++..+..+.
T Consensus 215 lslLdqli~y~ 225 (491)
T PRK14964 215 LFLLEQAAIYS 225 (491)
T ss_pred HHHHHHHHHhc
Confidence 77777766554
No 93
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.1e-12 Score=157.88 Aligned_cols=193 Identities=19% Similarity=0.249 Sum_probs=144.0
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++++|++.+++.|...+.. + ..+.++||+||||||||++|+++|+.+.....
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 4799999999999999887654 1 34578999999999999999999999864211
Q ss_pred ----------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHH
Q 001066 750 ----------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTL 815 (1167)
Q Consensus 750 ----------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~L 815 (1167)
...++.++... ......++.+++.+.. ....|+||||+|.|.. ..++.|
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naL 148 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNAL 148 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHH
Confidence 11222222211 1123445666665543 2356999999998863 456678
Q ss_pred HHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCc
Q 001066 816 LALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFA 895 (1167)
Q Consensus 816 L~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s 895 (1167)
+..|+.. ...+++|.+|+.++.+.+.+++ |+ ..++|..++.++...+|+..+...+..+++..+..|+..+.| +
T Consensus 149 Lk~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-s 222 (507)
T PRK06645 149 LKTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-S 222 (507)
T ss_pred HHHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8887753 4456777777888889999988 88 789999999999999999999988888888999999998887 6
Q ss_pred HHHHHHHHHHHHHHH
Q 001066 896 GADLQALCTQAAIIA 910 (1167)
Q Consensus 896 ~aDL~~Lv~~A~~~A 910 (1167)
.+++.+++..+..++
T Consensus 223 lR~al~~Ldkai~~~ 237 (507)
T PRK06645 223 ARDAVSILDQAASMS 237 (507)
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666777766554
No 94
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.46 E-value=1.5e-12 Score=154.58 Aligned_cols=182 Identities=24% Similarity=0.340 Sum_probs=128.5
Q ss_pred cCcccccChHHHHHH---HHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 683 EGFESVAGLQDVIRC---MKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~---L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+|++++|.++++.. |..++.. ....++||+||||||||++|++||..+. ..|+.++..
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~-----~~~~~l~a~ 70 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATD-----APFEALSAV 70 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEecc
Confidence 478999999998766 7666643 2345899999999999999999999876 345554443
Q ss_pred ccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
.. ....++.++..+. .....||||||||.+.. ..+..|+..|+ .+.+++|++|+
T Consensus 71 ~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-----------~~q~~LL~~le----~~~iilI~att 128 (413)
T PRK13342 71 TS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-----------AQQDALLPHVE----DGTITLIGATT 128 (413)
T ss_pred cc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-----------HHHHHHHHHhh----cCcEEEEEeCC
Confidence 21 1123344444442 23568999999998864 34556666665 35577776653
Q ss_pred --CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccC--CC-CCChhHHHHHHHHccCCcHHHHHHHHHHHHH
Q 001066 836 --RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW--PK-PVTGSLLKWIAARTAGFAGADLQALCTQAAI 908 (1167)
Q Consensus 836 --~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~--~~-~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~ 908 (1167)
....++++|++ |+ ..+.|++|+.++...+|+..+... +. .+++..+..|+..+.| ..+.+.+++..+..
T Consensus 129 ~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~ 202 (413)
T PRK13342 129 ENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAAL 202 (413)
T ss_pred CChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 34478899998 88 789999999999999999877543 22 5678888999998865 44555555555543
No 95
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.7e-14 Score=157.56 Aligned_cols=67 Identities=24% Similarity=0.378 Sum_probs=61.9
Q ss_pred chhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1091 NCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1091 ~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
|.-+|.+.|+-|++| +|||||||||||+||||+|++- +.+|++|=+|||++|||||.=.=||.+|.-
T Consensus 173 ~PElF~~~GI~PPKG----VLLYGPPGTGKTLLAkAVA~~T--~AtFIrvvgSElVqKYiGEGaRlVRelF~l 239 (406)
T COG1222 173 NPELFEELGIDPPKG----VLLYGPPGTGKTLLAKAVANQT--DATFIRVVGSELVQKYIGEGARLVRELFEL 239 (406)
T ss_pred CHHHHHHcCCCCCCc----eEeeCCCCCcHHHHHHHHHhcc--CceEEEeccHHHHHHHhccchHHHHHHHHH
Confidence 455667889999998 9999999999999999999999 599999999999999999999999999974
No 96
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.45 E-value=2.8e-12 Score=149.04 Aligned_cols=209 Identities=22% Similarity=0.255 Sum_probs=135.2
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC----CceEEEEeccccc
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD----KRIAYFARKGADC 761 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~----~~i~~~~l~~~~l 761 (1167)
+.++|.++.++.|..++...+. + ..+.+++|+||||||||+++++++..+.... ..+.++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4689999999999988754221 1 3346799999999999999999998875321 1256666665433
Q ss_pred chh------hhc--------------hHHHHHHHHHHHHHh-cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhh
Q 001066 762 LGK------YVG--------------DAERQLRLLFQVAEK-CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMD 820 (1167)
Q Consensus 762 ls~------~~g--------------~~e~~L~~lF~~A~~-~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd 820 (1167)
.+. ... .....+..++..... ..+.||+|||+|.|.... ..++..|+.+.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 211 000 112233445554432 356799999999997311 134555554422
Q ss_pred cc-cCCCceEEEccCCCCC---cCCcccCCCCCcc-cccccCCCCHHHHHHHHHHhhcc--CCCCCChhHHHHHHHH---
Q 001066 821 GL-KSRGSVVVIGATNRPE---AVDPALRRPGRFD-REIYFPLPSMEDRAAILSLHTER--WPKPVTGSLLKWIAAR--- 890 (1167)
Q Consensus 821 ~l-~~~~~ViVIaTTN~~d---~Ld~aLlrpgRF~-~~I~~~~P~~eER~eIL~~~l~~--~~~~l~d~~L~~LA~~--- 890 (1167)
.. ....++.+|+++|.++ .+++.+.+ ||. ..|.|++|+.++..+||+..+.. ....+++..+..++..
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 11 2235688888998875 46777777 774 67899999999999999998762 2333556655555554
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHcC
Q 001066 891 TAGFAGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 891 t~G~s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
+.|... .+..++..|...|..++
T Consensus 236 ~~Gd~R-~al~~l~~a~~~a~~~~ 258 (365)
T TIGR02928 236 EHGDAR-KAIDLLRVAGEIAEREG 258 (365)
T ss_pred hcCCHH-HHHHHHHHHHHHHHHcC
Confidence 345443 44567788888887654
No 97
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.2e-12 Score=165.17 Aligned_cols=196 Identities=21% Similarity=0.189 Sum_probs=140.6
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------- 748 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------- 748 (1167)
.+|++|+|.+.+++.|+.++.. + ..++.+||+||+|||||++|+.||+.+....
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 4799999999999999988754 1 2345689999999999999999999986421
Q ss_pred -------CceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc
Q 001066 749 -------KRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG 821 (1167)
Q Consensus 749 -------~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~ 821 (1167)
..+.++.++..... .+.+....+..++.........|+||||+|.|.. ..++.||..|+.
T Consensus 80 ~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~NaLLK~LEE 146 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFNALLKIVEE 146 (824)
T ss_pred HHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHHHHHHHHhC
Confidence 11233444332211 1222222222222222334567999999999975 567789999886
Q ss_pred ccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHH
Q 001066 822 LKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQA 901 (1167)
Q Consensus 822 l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~ 901 (1167)
.. ..++||++|+.++.|.+.|++ |+ +.|.|..++.++...+|..++...++.+++..+..|+..+.| +.+++.+
T Consensus 147 pP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~ 220 (824)
T PRK07764 147 PP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLS 220 (824)
T ss_pred CC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 54 356777777888888888988 88 789999999999999999999887887888888989888876 4555555
Q ss_pred HHHHHHHH
Q 001066 902 LCTQAAII 909 (1167)
Q Consensus 902 Lv~~A~~~ 909 (1167)
++.+...+
T Consensus 221 eLEKLia~ 228 (824)
T PRK07764 221 VLDQLLAG 228 (824)
T ss_pred HHHHHHhh
Confidence 55554433
No 98
>PRK06893 DNA replication initiation factor; Validated
Probab=99.45 E-value=2e-12 Score=141.69 Aligned_cols=164 Identities=12% Similarity=0.179 Sum_probs=113.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCccc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCR 800 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~ 800 (1167)
..++||||||||||+|++++|+++......+.|+....... ....++... .+..+|+||||+.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~----------~~~~~~~~~--~~~dlLilDDi~~~~~~~ 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY----------FSPAVLENL--EQQDLVCLDDLQAVIGNE 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh----------hhHHHHhhc--ccCCEEEEeChhhhcCCh
Confidence 45899999999999999999999865555555555432111 111222222 246899999999886421
Q ss_pred CcccccchHHHHHHHHHHhhcccCCCc-eEEEccCCCCCcCC---cccCCCCCcccccccCCCCHHHHHHHHHHhhccCC
Q 001066 801 TRQQDQTHSSVVSTLLALMDGLKSRGS-VVVIGATNRPEAVD---PALRRPGRFDREIYFPLPSMEDRAAILSLHTERWP 876 (1167)
Q Consensus 801 ~~~~~~~~~~vl~~LL~lLd~l~~~~~-ViVIaTTN~~d~Ld---~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~ 876 (1167)
.....|+.+++.....++ ++|++++..|..++ +.|.+..++...+.++.|+.+++.+||+..+...+
T Consensus 108 ---------~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 ---------EWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ---------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 122356666666655554 45566666676654 78888333456889999999999999999988778
Q ss_pred CCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 877 KPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 877 ~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
..+++..+.+|+.+..| +.+.|..++...
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 88899999999999987 444455554543
No 99
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.45 E-value=2.7e-12 Score=147.27 Aligned_cols=182 Identities=21% Similarity=0.277 Sum_probs=126.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|.+.+++.|..++.. ....++||+||||||||++|+++|+.+........++.+++.++.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 4689999999999999888753 122369999999999999999999998654322344555554432
Q ss_pred hhh-------------hch-------HHHHHHHHHHHHHh-----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHH
Q 001066 763 GKY-------------VGD-------AERQLRLLFQVAEK-----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLA 817 (1167)
Q Consensus 763 s~~-------------~g~-------~e~~L~~lF~~A~~-----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~ 817 (1167)
... .+. ....++.+...... ..+.+|||||++.+.. ..+..|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~~~L~~ 147 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQQALRR 147 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHHHHHHH
Confidence 111 000 01223333322222 2356999999998853 34556777
Q ss_pred HhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccC
Q 001066 818 LMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAG 893 (1167)
Q Consensus 818 lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G 893 (1167)
+|+..... ..+|.+++.+..+.+.|.+ |+ ..+.|++|+.++...+|+..+...+..+++..+..|+..+.|
T Consensus 148 ~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 148 IMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77755433 3344466566677778877 77 678999999999999999998888888899999999998854
No 100
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.44 E-value=3.1e-12 Score=161.64 Aligned_cols=228 Identities=18% Similarity=0.176 Sum_probs=146.2
Q ss_pred cc-cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc---
Q 001066 685 FE-SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD--- 760 (1167)
Q Consensus 685 ~d-dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~--- 760 (1167)
|+ ++.|++++|+++.+++...... +-.....++|+||||+|||++++.||..++. +|+.++...
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~-----~~~~i~~~~~~d 387 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGR-----KYVRMALGGVRD 387 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEEcCCCCC
Confidence 44 4899999999999887642211 1123456999999999999999999998874 333332221
Q ss_pred ---cc---hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc------------
Q 001066 761 ---CL---GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL------------ 822 (1167)
Q Consensus 761 ---ll---s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l------------ 822 (1167)
+. ..|.|.....+...+..+.. ...||||||||.+..... + .....|+..|+.-
T Consensus 388 ~~~i~g~~~~~~g~~~G~~~~~l~~~~~-~~~villDEidk~~~~~~--g-----~~~~aLlevld~~~~~~~~d~~~~~ 459 (784)
T PRK10787 388 EAEIRGHRRTYIGSMPGKLIQKMAKVGV-KNPLFLLDEIDKMSSDMR--G-----DPASALLEVLDPEQNVAFSDHYLEV 459 (784)
T ss_pred HHHhccchhccCCCCCcHHHHHHHhcCC-CCCEEEEEChhhcccccC--C-----CHHHHHHHHhccccEEEEecccccc
Confidence 11 23555555555555555443 334899999999975211 1 2345777777641
Q ss_pred -cCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc----------CCCCCChhHHHHHHHH-
Q 001066 823 -KSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER----------WPKPVTGSLLKWIAAR- 890 (1167)
Q Consensus 823 -~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~----------~~~~l~d~~L~~LA~~- 890 (1167)
..-+++++|+|+|.. .++++|++ || ..|.|+.++.++..+|.+.++-. ....+++..+..|+..
T Consensus 460 ~~dls~v~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~y 535 (784)
T PRK10787 460 DYDLSDVMFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYY 535 (784)
T ss_pred cccCCceEEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhC
Confidence 123679999999987 59999998 99 68999999999999999887731 1234566777777652
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhc
Q 001066 891 TAGFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSC 952 (1167)
Q Consensus 891 t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~ 952 (1167)
+..+-.+.|+.++.+....++.+.+ .......+.++.+++.+.+..
T Consensus 536 t~e~GaR~LeR~I~~i~r~~l~~~~----------------~~~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 536 TREAGVRSLEREISKLCRKAVKQLL----------------LDKSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred CcccCCcHHHHHHHHHHHHHHHHHH----------------hcCCCceeeecHHHHHHHhCC
Confidence 2233345555554443332222110 011223467788888877763
No 101
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=4.5e-12 Score=148.94 Aligned_cols=210 Identities=23% Similarity=0.289 Sum_probs=138.6
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch--
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG-- 763 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls-- 763 (1167)
+.++|.++.++.|...+...+. + ..+.+++|+||||||||++++.++..+......+.++.+++....+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 5579999999999888754221 1 2346799999999999999999999886543346666666643221
Q ss_pred --------hhhc--------hHHHHHHHHHHHHHh-cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCC
Q 001066 764 --------KYVG--------DAERQLRLLFQVAEK-CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRG 826 (1167)
Q Consensus 764 --------~~~g--------~~e~~L~~lF~~A~~-~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~ 826 (1167)
...+ .....+..++..... ..+.||+|||+|.+.... ...++..|+..++... ..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-------~~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-------GNDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-------CchHHHHHHHhhhccC-CC
Confidence 1111 122333334433332 346799999999987211 1245667776665543 23
Q ss_pred ceEEEccCCCCC---cCCcccCCCCCc-ccccccCCCCHHHHHHHHHHhhccC--CCCCChhHHHHHHHHccCC--cHHH
Q 001066 827 SVVVIGATNRPE---AVDPALRRPGRF-DREIYFPLPSMEDRAAILSLHTERW--PKPVTGSLLKWIAARTAGF--AGAD 898 (1167)
Q Consensus 827 ~ViVIaTTN~~d---~Ld~aLlrpgRF-~~~I~~~~P~~eER~eIL~~~l~~~--~~~l~d~~L~~LA~~t~G~--s~aD 898 (1167)
++.+|+++|..+ .+++.+.+ || ...|.|++++.++..+||+..+..- ...+++..+..++..+.+. ..+.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 677888877653 46677766 55 3578999999999999999887532 3346778888888887432 2233
Q ss_pred HHHHHHHHHHHHHHcC
Q 001066 899 LQALCTQAAIIALKRN 914 (1167)
Q Consensus 899 L~~Lv~~A~~~A~~R~ 914 (1167)
+..++..|...|..++
T Consensus 251 a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 251 AIDLLRRAGLIAEREG 266 (394)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4467788888887654
No 102
>PRK04195 replication factor C large subunit; Provisional
Probab=99.44 E-value=1.9e-12 Score=156.38 Aligned_cols=185 Identities=22% Similarity=0.256 Sum_probs=132.3
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++|+|.+.+++.|..++..... | .+++++||+||||+|||++|++||+.++ +.++.+++.+..
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~-----~~~ielnasd~r 76 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYG-----WEVIELNASDQR 76 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEcccccc
Confidence 4799999999999999998854221 2 2367899999999999999999999986 456666655432
Q ss_pred hhhhchHHHHHHHHHHHHHh------cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 763 GKYVGDAERQLRLLFQVAEK------CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~------~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
.. ..+..+...+.. ..+.||||||+|.|.... ....+..|+..++. ....||.++|.
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~----~~~~iIli~n~ 139 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK----AKQPIILTAND 139 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc----CCCCEEEeccC
Confidence 11 122233222221 256799999999986411 11334566777662 23345557788
Q ss_pred CCcCCc-ccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHH
Q 001066 837 PEAVDP-ALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQA 901 (1167)
Q Consensus 837 ~d~Ld~-aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~ 901 (1167)
+..+.+ .|++ |+ ..|.|+.|+..++..+|+.++...+..+++..+..|+..+.|.....|..
T Consensus 140 ~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~ 202 (482)
T PRK04195 140 PYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAIND 202 (482)
T ss_pred ccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 777776 5665 55 78999999999999999999988888889999999999887644444433
No 103
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.44 E-value=3.2e-12 Score=140.60 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=113.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~ 799 (1167)
..+++|+||+|||||+|++++++.+......+.|+.++... . + ...+++... ...+|+||||+.+.++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~--~-~-------~~~~~~~~~--~~dlliiDdi~~~~~~ 112 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA--W-F-------VPEVLEGME--QLSLVCIDNIECIAGD 112 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh--h-h-------hHHHHHHhh--hCCEEEEeChhhhcCC
Confidence 35799999999999999999999877554445555543211 1 0 111122111 2368999999988642
Q ss_pred cCcccccchHHHHHHHHHHhhcccCCCce-EEEccCCCCCc---CCcccCCCCCcc--cccccCCCCHHHHHHHHHHhhc
Q 001066 800 RTRQQDQTHSSVVSTLLALMDGLKSRGSV-VVIGATNRPEA---VDPALRRPGRFD--REIYFPLPSMEDRAAILSLHTE 873 (1167)
Q Consensus 800 ~~~~~~~~~~~vl~~LL~lLd~l~~~~~V-iVIaTTN~~d~---Ld~aLlrpgRF~--~~I~~~~P~~eER~eIL~~~l~ 873 (1167)
. .....|+.+++.....++. +|+++++.|.. +.+.|++ |+. ..+.+.+|+.+++.+||+..+.
T Consensus 113 ~---------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 113 E---------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred H---------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 1 2233455555555445543 45545555555 5788988 874 6889999999999999998777
Q ss_pred cCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 874 RWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 874 ~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
..+..+++..+.+|+.+..+ +.+.+..++......+
T Consensus 182 ~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 182 LRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred HcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 77788999999999999987 4555666666543333
No 104
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=1.5e-12 Score=152.83 Aligned_cols=190 Identities=19% Similarity=0.259 Sum_probs=131.7
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC--------------
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK-------------- 749 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~-------------- 749 (1167)
.|++|+|++.+++.|+.++..+..++ ..++...++.+||+||||+|||++|+++|..+.....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 58999999999999999998754322 2233345678999999999999999999998754321
Q ss_pred ----ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc
Q 001066 750 ----RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG 821 (1167)
Q Consensus 750 ----~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~ 821 (1167)
...++.+.... .. -....++.+++.+.. ....|+||||+|.+.. ...+.|+..|+.
T Consensus 80 ~~~~hpD~~~i~~~~-~~----i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-----------~aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-LS----IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-----------RAANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc-cc----CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-----------HHHHHHHHHhhc
Confidence 00111111110 00 112346677776654 2346999999999975 445778888886
Q ss_pred ccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHH
Q 001066 822 LKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQA 901 (1167)
Q Consensus 822 l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~ 901 (1167)
.. .++++|.+|+.++.+.+.++| |+ +.|.|++|+.++..++|.... + ++...+..++..+.|..+.++..
T Consensus 144 p~--~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~--~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PP--PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---G--VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CC--CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---C--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 43 234444455558999999998 98 799999999999888886322 2 35566778899999988877654
Q ss_pred H
Q 001066 902 L 902 (1167)
Q Consensus 902 L 902 (1167)
+
T Consensus 214 ~ 214 (394)
T PRK07940 214 A 214 (394)
T ss_pred h
Confidence 4
No 105
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=5.4e-13 Score=159.09 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=117.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~ 799 (1167)
.++++||||+|+|||+|++++++.+.... ..++++....+...+.......-...|.... ....+|+||||+.+.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~--~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESG--GKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK 217 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC
Confidence 36799999999999999999999886443 3445555555544333222211112344333 36789999999988652
Q ss_pred cCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCc---CCcccCCCCCcc--cccccCCCCHHHHHHHHHHhhcc
Q 001066 800 RTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEA---VDPALRRPGRFD--REIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 800 ~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~---Ld~aLlrpgRF~--~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
. ..+..|+.+++.+...++.+||+++..|.. +++.|.+ ||. ..+.+++|+.++|.+||+..+..
T Consensus 218 ~---------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 218 G---------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred h---------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1 223455556555544455666656555543 5688888 884 68889999999999999999988
Q ss_pred CCCCCChhHHHHHHHHccCCcHHHHHHHHHH
Q 001066 875 WPKPVTGSLLKWIAARTAGFAGADLQALCTQ 905 (1167)
Q Consensus 875 ~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~ 905 (1167)
.+..+++..+..|+.+..+-.+ .|..++..
T Consensus 287 ~~~~l~~evl~~la~~~~~dir-~L~g~l~~ 316 (445)
T PRK12422 287 LSIRIEETALDFLIEALSSNVK-SLLHALTL 316 (445)
T ss_pred cCCCCCHHHHHHHHHhcCCCHH-HHHHHHHH
Confidence 8888999999999998886444 44443333
No 106
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.6e-12 Score=156.97 Aligned_cols=192 Identities=22% Similarity=0.206 Sum_probs=139.7
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------- 748 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------- 748 (1167)
.+|++|+|++.+++.|..++.. + ..++.+||+||+|||||++|+++|+.+....
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 77 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCV 77 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHH
Confidence 4799999999999999998764 1 2344589999999999999999999876421
Q ss_pred -------CceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHH
Q 001066 749 -------KRIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLA 817 (1167)
Q Consensus 749 -------~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~ 817 (1167)
....++.++..... .+ ..++.+...+. .....|+||||+|.|.. ..++.|+.
T Consensus 78 ~i~~~~~~~~dvieidaas~~--gv----d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~NALLK 140 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHG--GV----DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFNALLK 140 (584)
T ss_pred HhhcccCCCceEEEecccccc--CH----HHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHHHHHH
Confidence 11234444332211 12 22333333222 23456999999999974 46778888
Q ss_pred HhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHH
Q 001066 818 LMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGA 897 (1167)
Q Consensus 818 lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~a 897 (1167)
.|+.. ...+++|.+|+.+..+.+.|++ |. +.++|..++.++..++|..++...+..+++..+..|+..+.| +.+
T Consensus 141 ~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dlR 214 (584)
T PRK14952 141 IVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SPR 214 (584)
T ss_pred HHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88864 3467777788888899999988 86 789999999999999999999888888888888889887776 555
Q ss_pred HHHHHHHHHHHH
Q 001066 898 DLQALCTQAAII 909 (1167)
Q Consensus 898 DL~~Lv~~A~~~ 909 (1167)
++.+++.....+
T Consensus 215 ~aln~Ldql~~~ 226 (584)
T PRK14952 215 DTLSVLDQLLAG 226 (584)
T ss_pred HHHHHHHHHHhc
Confidence 555666655444
No 107
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=2.7e-12 Score=157.19 Aligned_cols=192 Identities=19% Similarity=0.252 Sum_probs=142.1
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|.+.+++.|...+... ..++.+||+||+|||||++|+.+|+.+.....
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 47999999999999999987641 33466899999999999999999998764221
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.+++.. ......++.+...+.. ....|+||||+|.|.. ..++.|+..|
T Consensus 81 ~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLLKtL 143 (559)
T PRK05563 81 AITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALLKTL 143 (559)
T ss_pred HHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHHHHh
Confidence 12333333321 1122345555555442 3456999999999864 4567888888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. ...+++|.+|+.++.+.+.+++ |+ ..+.|+.|+..+...+|+..+...+..+++..+..|+..+.| ..+++
T Consensus 144 Eep--p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~a 217 (559)
T PRK05563 144 EEP--PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDA 217 (559)
T ss_pred cCC--CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 754 3456777677788899999988 88 688999999999999999999888888888899999998887 55555
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+++.++..+
T Consensus 218 l~~Ldq~~~~ 227 (559)
T PRK05563 218 LSILDQAISF 227 (559)
T ss_pred HHHHHHHHHh
Confidence 5666666554
No 108
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=3.5e-12 Score=152.51 Aligned_cols=240 Identities=13% Similarity=0.161 Sum_probs=155.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHH---HHHHHHHHHHhcCCcEEEEcCCCCc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAER---QLRLLFQVAEKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~---~L~~lF~~A~~~~psILfIDEID~L 796 (1167)
.++++|||++|+|||+|++++++.+........++++.+.+++..+...... .+.. |... .....+|+||||+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~-~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNE-ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHH-hccCCEEEEeccccc
Confidence 3579999999999999999999987654444566677777776655444332 1211 2111 236789999999988
Q ss_pred CcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCc---CCcccCCCCCc--ccccccCCCCHHHHHHHHHHh
Q 001066 797 APCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEA---VDPALRRPGRF--DREIYFPLPSMEDRAAILSLH 871 (1167)
Q Consensus 797 ~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~---Ld~aLlrpgRF--~~~I~~~~P~~eER~eIL~~~ 871 (1167)
.++ ...+..|+.+++.+...++.+||++...|.. +++.|.+ || ...+.+.+|+.++|.+||+..
T Consensus 219 ~~k---------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 219 SYK---------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred cCC---------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHH
Confidence 642 1344567777776656666556554445544 4678887 77 456788999999999999999
Q ss_pred hccCCC--CCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc----CCChHHHHHHHHHHhhccccccCCccccCHHH
Q 001066 872 TERWPK--PVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR----NFPLQEILSAAAEKAFCSKRVTLPSFAVEERD 945 (1167)
Q Consensus 872 l~~~~~--~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R----~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D 945 (1167)
+...+. .+++..+..|+.++.| +++.|..++.+....+... .++...+. ...... .......++.+.
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~-~~l~~~-----~~~~~~~~t~~~ 360 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVS-DLFRDI-----PTSKLGILNVKK 360 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHH-HHHhhc-----cccccCCCCHHH
Confidence 876543 5888999999999986 7778888888877666654 23332222 111111 111223478888
Q ss_pred HHHHhhcCCC------CCCcccccccccccccCCCCCCcc
Q 001066 946 WLEALSCSPP------PCSKREAGIAAHDLVSSPLPSHLI 979 (1167)
Q Consensus 946 ~~~AL~~~~P------~~S~re~~~a~~d~~~a~L~~~ii 979 (1167)
+.++++..-. .+..|....+++++++++|.+.++
T Consensus 361 I~~~Va~~~~i~~~dl~s~~R~~~i~~~RqiamyL~r~~t 400 (450)
T PRK14087 361 IKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTKEIL 400 (450)
T ss_pred HHHHHHHHcCCCHHHHhCCCCCccccHHHHHHHHHHHHHc
Confidence 8888875432 112233345556666666654333
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.42 E-value=2.1e-12 Score=140.59 Aligned_cols=178 Identities=17% Similarity=0.246 Sum_probs=122.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~ 799 (1167)
..+++||||+|+|||+|++++++++........++++++..+...+..........-|.... ....+|+||+|+.+..+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL-RSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH-CTSSEEEEETGGGGTTH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh-hcCCEEEEecchhhcCc
Confidence 34699999999999999999999887543445666666666665554433222112232222 36689999999998751
Q ss_pred cCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC---CcccCCCCCcc--cccccCCCCHHHHHHHHHHhhcc
Q 001066 800 RTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV---DPALRRPGRFD--REIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 800 ~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L---d~aLlrpgRF~--~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
...+..|+.+++.+...++.+||++...|..+ ++.|.+ ||. ..+.+.+|+.++|.+||+.++..
T Consensus 113 ---------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 113 ---------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 24567788888888777777777776666654 567777 774 47788999999999999999999
Q ss_pred CCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 875 WPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 875 ~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
.+..+++..+..|+.+..+ +.+.|..++.+-..++
T Consensus 182 ~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 182 RGIELPEEVIEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp TT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 9999999999999999875 6677777776654443
No 110
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.3e-12 Score=156.71 Aligned_cols=192 Identities=19% Similarity=0.224 Sum_probs=140.3
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------- 748 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------- 748 (1167)
.+|++|+|.+.+++.|..++... ..+..+||+||+|+|||++|+.+|+.+....
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 47999999999999999987651 3345679999999999999999999986421
Q ss_pred ----------CceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHH
Q 001066 749 ----------KRIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVST 814 (1167)
Q Consensus 749 ----------~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~ 814 (1167)
....++.++...- .....++.+.+.+.. ....|+||||+|.|.. ...+.
T Consensus 81 C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a~Na 143 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TAFNA 143 (618)
T ss_pred cHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HHHHH
Confidence 0112333333211 112234555554432 2346999999999875 45667
Q ss_pred HHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCC
Q 001066 815 LLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGF 894 (1167)
Q Consensus 815 LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~ 894 (1167)
|+..|+.. ...++||.+|+.+..+.+.+++ |+ ..++|..++.++..+.|+..+...+..+++..+..|+..+.|
T Consensus 144 LLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G- 217 (618)
T PRK14951 144 MLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG- 217 (618)
T ss_pred HHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88777753 3456667777788888888888 88 899999999999999999998888888888899999998887
Q ss_pred cHHHHHHHHHHHHHH
Q 001066 895 AGADLQALCTQAAII 909 (1167)
Q Consensus 895 s~aDL~~Lv~~A~~~ 909 (1167)
+.+++.+++.++..+
T Consensus 218 slR~al~lLdq~ia~ 232 (618)
T PRK14951 218 SMRDALSLTDQAIAF 232 (618)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555666655544
No 111
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.42 E-value=2.9e-12 Score=138.91 Aligned_cols=194 Identities=16% Similarity=0.242 Sum_probs=129.5
Q ss_pred Cccccc--ChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 684 GFESVA--GLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 684 ~~ddL~--Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
+|++.+ +....+..++.++.. ..+.+++|+||+|||||++|++++..+.... ..++.+++..+
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~--~~~~~i~~~~~ 77 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERG--KSAIYLPLAEL 77 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcC--CcEEEEeHHHH
Confidence 445544 466677777776431 3457899999999999999999999886433 34555555544
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCC
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVD 841 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld 841 (1167)
.... ..++... ....+|||||++.+.... ..+..|+.+++.....+..+||.++..+..+.
T Consensus 78 ~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~---------~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~ 138 (226)
T TIGR03420 78 AQAD--------PEVLEGL--EQADLVCLDDVEAIAGQP---------EWQEALFHLYNRVREAGGRLLIAGRAAPAQLP 138 (226)
T ss_pred HHhH--------HHHHhhc--ccCCEEEEeChhhhcCCh---------HHHHHHHHHHHHHHHcCCeEEEECCCChHHCC
Confidence 3221 1222222 234699999999886410 11335555555443333445554444444332
Q ss_pred ---cccCCCCCc--ccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 001066 842 ---PALRRPGRF--DREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 842 ---~aLlrpgRF--~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
+.|.+ || ...|.+|+|+.+++..+++.++...+..+++..+..|+.. .+.+.+++.++++.+..++...+
T Consensus 139 ~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~ 213 (226)
T TIGR03420 139 LRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAAK 213 (226)
T ss_pred cccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC
Confidence 55665 65 3678999999999999999888777777888999999996 55689999999888776555544
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=3.6e-12 Score=155.45 Aligned_cols=189 Identities=21% Similarity=0.237 Sum_probs=135.3
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------- 748 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------- 748 (1167)
.+|++|+|.+.+++.|..++.. + ..+..+||+||+|+|||++|+.+|+.+....
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 4799999999999999988754 1 2346799999999999999999999986421
Q ss_pred -----CceEEEEecccccchhhhchHHHHHHHHHHHH-HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc
Q 001066 749 -----KRIAYFARKGADCLGKYVGDAERQLRLLFQVA-EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL 822 (1167)
Q Consensus 749 -----~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A-~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l 822 (1167)
....++.++.... ..+..... +...+... ......||||||+|.|.. ..++.|+..|+..
T Consensus 81 ~i~~g~hpDv~eId~a~~--~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naLLk~LEEP 146 (624)
T PRK14959 81 KVTQGMHVDVVEIDGASN--RGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNALLKTLEEP 146 (624)
T ss_pred HHhcCCCCceEEEecccc--cCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHHHHHhhcc
Confidence 0112333332111 11111111 22222211 223457999999999864 4567788888753
Q ss_pred cCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHH
Q 001066 823 KSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQAL 902 (1167)
Q Consensus 823 ~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~L 902 (1167)
...+++|++|+.+..+.+.|++ |+ ..|.|+.++.++...+|...+...+..+++..+..|+..+.|.....|..|
T Consensus 147 --~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lL 221 (624)
T PRK14959 147 --PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLL 221 (624)
T ss_pred --CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3467788888888888888888 88 688999999999999999988887777888999999999887555555444
No 113
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.40 E-value=4.6e-12 Score=146.63 Aligned_cols=192 Identities=21% Similarity=0.280 Sum_probs=138.4
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
..|++++|.+..++.|...+.. + ..++.+||+||||+|||++|+++|..+.....
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4799999999999999988754 1 23467899999999999999999998753211
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.++... ......++.++..+.. ....||+|||+|.+.. ..++.|+..|
T Consensus 79 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~Ll~~l 141 (355)
T TIGR02397 79 EINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNALLKTL 141 (355)
T ss_pred HHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHHHHHH
Confidence 12233332221 0112335556655543 2345999999998853 4556777777
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. ...+++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++..++...+..+++..+..|+..+.| .++.+
T Consensus 142 e~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a 215 (355)
T TIGR02397 142 EEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDA 215 (355)
T ss_pred hCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHH
Confidence 653 3456667777888888888988 88 688999999999999999999888878888899999998876 55555
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+.+..+..+
T Consensus 216 ~~~lekl~~~ 225 (355)
T TIGR02397 216 LSLLDQLISF 225 (355)
T ss_pred HHHHHHHHhh
Confidence 5555555444
No 114
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=5e-12 Score=153.87 Aligned_cols=192 Identities=20% Similarity=0.227 Sum_probs=139.6
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|.+.+++.|..++... ..++.+||+||+|+|||++|+.+|+.+.....
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 47999999999999999887541 23456899999999999999999999864211
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.++... ......++.++..+.. ....|+||||+|.|.. ...+.|+..|
T Consensus 81 ~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naLLK~L 143 (527)
T PRK14969 81 EIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAMLKTL 143 (527)
T ss_pred HHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHHHHHH
Confidence 01222222211 1112345556555533 2346999999998864 4567788888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. ...+++|.+|+.+..+.+.+++ |+ ..+.|..++.++....|...+...+..+++..+..|+..+.| +.+++
T Consensus 144 Eep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~a 217 (527)
T PRK14969 144 EEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDA 217 (527)
T ss_pred hCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 863 3456777777778888878887 88 899999999999999999888877777788889999998876 45566
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+++.++..+
T Consensus 218 l~lldqai~~ 227 (527)
T PRK14969 218 LSLLDQAIAY 227 (527)
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 115
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.40 E-value=2.5e-12 Score=149.82 Aligned_cols=215 Identities=16% Similarity=0.200 Sum_probs=160.4
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCc
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~ 798 (1167)
..+.++||||.|.|||+|++|+++..........++.+....++..++......-..-|+.-+ +-.+|+||+|+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 456799999999999999999999998877777888888888877766665554445566655 567999999999986
Q ss_pred ccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC---CcccCCCCCcc--cccccCCCCHHHHHHHHHHhhc
Q 001066 799 CRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV---DPALRRPGRFD--REIYFPLPSMEDRAAILSLHTE 873 (1167)
Q Consensus 799 ~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L---d~aLlrpgRF~--~~I~~~~P~~eER~eIL~~~l~ 873 (1167)
+. ..+..|+..+..+...++.+|+.+...|..+ .+.|++ ||. ..+.+.+|+.+.|..||+..+.
T Consensus 190 k~---------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 KE---------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred Ch---------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 32 3456788888887777777777666677765 478888 874 5668899999999999999999
Q ss_pred cCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHhhccccccCCccccCHHHHHHHhhc
Q 001066 874 RWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPL-QEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSC 952 (1167)
Q Consensus 874 ~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~-~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~ 952 (1167)
..+..+++..+..||.+... +.++|..++.+...+|...+... .++......... .... . ++..++.+++++
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~----~~~~-~-itie~I~~~Va~ 331 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTKRAITIDLVKEILKDLL----RAGE-K-ITIEDIQKIVAE 331 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhh----cccc-c-CCHHHHHHHHHH
Confidence 88899999999999998874 67778888887777776655321 122211111111 1112 5 899999998875
Q ss_pred C
Q 001066 953 S 953 (1167)
Q Consensus 953 ~ 953 (1167)
.
T Consensus 332 ~ 332 (408)
T COG0593 332 Y 332 (408)
T ss_pred H
Confidence 5
No 116
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.7e-12 Score=151.70 Aligned_cols=189 Identities=20% Similarity=0.207 Sum_probs=135.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------- 748 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------- 748 (1167)
.+|++|+|++.+++.|..++... ..+..+||+||||||||++|+++|+.+....
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~ 78 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA 78 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH
Confidence 47999999999999999887641 2345579999999999999999999986321
Q ss_pred ----CceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhh
Q 001066 749 ----KRIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMD 820 (1167)
Q Consensus 749 ----~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd 820 (1167)
....++.++.... .....++.+...+.. ..+.||||||+|.+.. ..++.|+..|+
T Consensus 79 i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-----------~a~naLLk~LE 141 (504)
T PRK14963 79 VRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-----------SAFNALLKTLE 141 (504)
T ss_pred HhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-----------HHHHHHHHHHH
Confidence 0112333333211 112233444333322 3567999999997753 45667777777
Q ss_pred cccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHH
Q 001066 821 GLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQ 900 (1167)
Q Consensus 821 ~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~ 900 (1167)
.. ...+++|.+|+.+..+.+.+.+ |+ ..+.|..|+.++...+|+..+...+..+++..+..|+..+.|.. +.+.
T Consensus 142 ep--~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gdl-R~al 215 (504)
T PRK14963 142 EP--PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAM-RDAE 215 (504)
T ss_pred hC--CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHH
Confidence 53 3356667778888889999988 87 68999999999999999999988888888899999999988744 4444
Q ss_pred HHHHHH
Q 001066 901 ALCTQA 906 (1167)
Q Consensus 901 ~Lv~~A 906 (1167)
++++.+
T Consensus 216 n~Lekl 221 (504)
T PRK14963 216 SLLERL 221 (504)
T ss_pred HHHHHH
Confidence 444444
No 117
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=8.2e-12 Score=151.43 Aligned_cols=192 Identities=19% Similarity=0.188 Sum_probs=137.2
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|.+.+++.|...+.. + ..+..+||+||+|+|||++|+.+|+.+.....
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 4799999999999999888754 1 23456899999999999999999998764210
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.++..... + ...++.++..+. .....|+||||+|.|.. ..++.|+..|
T Consensus 81 ~i~~~~~~dlieidaas~~----g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naLLK~L 143 (546)
T PRK14957 81 AINNNSFIDLIEIDAASRT----G--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNALLKTL 143 (546)
T ss_pred HHhcCCCCceEEeeccccc----C--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHHHHHH
Confidence 1122333221111 1 122334443332 23457999999998864 5677888888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. .+.+++|++|+.+..+.+.+++ |+ ..++|..++.++...+|...+...+..+++..+..|+..+.| +.+++
T Consensus 144 Eep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~a 217 (546)
T PRK14957 144 EEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRDA 217 (546)
T ss_pred hcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 864 3456666677778888888888 88 899999999999999999988888888888999999998876 44555
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+++..+..+
T Consensus 218 lnlLek~i~~ 227 (546)
T PRK14957 218 LSLLDQAISF 227 (546)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=8.3e-12 Score=154.29 Aligned_cols=192 Identities=20% Similarity=0.291 Sum_probs=139.3
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR------------ 750 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~------------ 750 (1167)
.+|++|+|++.+++.|...+... ..++.+||+||+|+|||++|+++|..+......
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 47999999999999999988651 334668999999999999999999987642210
Q ss_pred ----eEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc
Q 001066 751 ----IAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL 822 (1167)
Q Consensus 751 ----i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l 822 (1167)
..++.+++.. ......++.+...+.. ....|++|||+|.|.. ..++.|+..|+..
T Consensus 83 ~~~~~Dvieidaas------n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEP 145 (725)
T PRK07133 83 VNNSLDIIEMDAAS------NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEP 145 (725)
T ss_pred hcCCCcEEEEeccc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcC
Confidence 1111121110 0112335566555543 3456999999998864 4577888888864
Q ss_pred cCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHH
Q 001066 823 KSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQAL 902 (1167)
Q Consensus 823 ~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~L 902 (1167)
...+++|.+|+.++.|.+.+++ |+ ..+.|.+|+.++...+|...+...+..+++..+..||..+.|-. +++..+
T Consensus 146 --P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gsl-R~Alsl 219 (725)
T PRK07133 146 --PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSL-RDALSI 219 (725)
T ss_pred --CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHH
Confidence 3456777777888899999988 88 68999999999999999998888777778888999999888744 444455
Q ss_pred HHHHHHH
Q 001066 903 CTQAAII 909 (1167)
Q Consensus 903 v~~A~~~ 909 (1167)
+..+..+
T Consensus 220 Lekl~~y 226 (725)
T PRK07133 220 AEQVSIF 226 (725)
T ss_pred HHHHHHh
Confidence 5544433
No 119
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=9e-12 Score=145.48 Aligned_cols=193 Identities=18% Similarity=0.228 Sum_probs=137.7
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-------CceEEEE
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------KRIAYFA 755 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------~~i~~~~ 755 (1167)
.+|++|+|.+.+++.+...+... ..+.++|||||||+|||++|+++|+.+.... ..+.++.
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 47999999999999999887551 3456899999999999999999999886421 1222333
Q ss_pred ecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEE
Q 001066 756 RKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVI 831 (1167)
Q Consensus 756 l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVI 831 (1167)
++... ......++.++..+.. ..+.||||||+|.+.. ..++.|+..|+.. ....++|
T Consensus 82 l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~--~~~~~~I 142 (367)
T PRK14970 82 LDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEP--PAHAIFI 142 (367)
T ss_pred ecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCC--CCceEEE
Confidence 32211 1112445556655432 2356999999998764 3456777777653 2345555
Q ss_pred ccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 832 GATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 832 aTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
.+|+.+..+.+++.+ |+ ..+.|+.|+.++...++...+...+..+++..+..|+..+.| +.+.+.+.++....++
T Consensus 143 l~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~ 217 (367)
T PRK14970 143 LATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC 217 (367)
T ss_pred EEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc
Confidence 567777788888887 77 578999999999999999988888888889999999998775 5555555555554443
No 120
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.38 E-value=6.8e-12 Score=143.24 Aligned_cols=178 Identities=20% Similarity=0.231 Sum_probs=121.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|.+.+++.+..++.. + ..+..+||+||||+|||++|+++|+.++ ..++.+++..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~-----~~~~~i~~~~-- 78 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVG-----AEVLFVNGSD-- 78 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhC-----ccceEeccCc--
Confidence 5899999999999999888753 1 2345566799999999999999999875 3444555443
Q ss_pred hhhhchHHHHHHHHHHHHH-hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCC
Q 001066 763 GKYVGDAERQLRLLFQVAE-KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVD 841 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~-~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld 841 (1167)
.. .......+........ ...+.||||||+|.+.. ......|...|+... .++.||.|||.+..+.
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAYS--KNCSFIITANNKNGII 145 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhcC--CCceEEEEcCChhhch
Confidence 11 1222222222211111 13578999999998832 123345556666543 4467777999988999
Q ss_pred cccCCCCCcccccccCCCCHHHHHHHHHHhhc-------cCCCCCChhHHHHHHHHccCCc
Q 001066 842 PALRRPGRFDREIYFPLPSMEDRAAILSLHTE-------RWPKPVTGSLLKWIAARTAGFA 895 (1167)
Q Consensus 842 ~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~-------~~~~~l~d~~L~~LA~~t~G~s 895 (1167)
+++++ || ..+.|+.|+.+++.+|++.++. ..+..+++..+..++....+-.
T Consensus 146 ~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~ 203 (316)
T PHA02544 146 EPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDF 203 (316)
T ss_pred HHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCH
Confidence 99998 99 6889999999999888765433 2355567777888888776543
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.2e-11 Score=149.26 Aligned_cols=193 Identities=19% Similarity=0.202 Sum_probs=142.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------- 748 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------- 748 (1167)
.+|++|+|.+.+++.|...+.. + ..++.+||+||+|+|||++|+++|+.+....
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 4899999999999999988754 2 3345679999999999999999999875321
Q ss_pred -----CceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 749 -----KRIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 749 -----~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
....++.++...-. .-..++.+...+.. ....|++|||+|.|.. ..++.|+..|
T Consensus 79 ~~~~~~h~dv~eldaas~~------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NALLK~L 141 (535)
T PRK08451 79 SALENRHIDIIEMDAASNR------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNALLKTL 141 (535)
T ss_pred HHhhcCCCeEEEecccccc------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHHHHH
Confidence 11233333322110 12334444443322 2335999999998864 5677889988
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+..+ ..+.+|.+|+.+..+.+.+++ |. ..++|.+++.++....+...+...+..+++..+..|+..+.| +.+++
T Consensus 142 EEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~a 215 (535)
T PRK08451 142 EEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDT 215 (535)
T ss_pred hhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHH
Confidence 8753 345566666778889999998 87 799999999999999999999888888888999999998876 66677
Q ss_pred HHHHHHHHHHH
Q 001066 900 QALCTQAAIIA 910 (1167)
Q Consensus 900 ~~Lv~~A~~~A 910 (1167)
.+++.++..++
T Consensus 216 lnlLdqai~~~ 226 (535)
T PRK08451 216 LTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHhc
Confidence 77777776665
No 122
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=9.8e-12 Score=151.07 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=137.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|.+.+++.|..++.. + ..++++||+||+|+|||++|+++|+.+.....
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 4799999999999999888754 1 33467999999999999999999998754211
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.+++... ..-..++.+...+.. ....|++|||+|.|.. ...+.|+..|
T Consensus 81 ~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLLKtL 143 (605)
T PRK05896 81 SINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALLKTL 143 (605)
T ss_pred HHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHHHHH
Confidence 112333332211 111234445444332 2346999999998864 3566888888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. ...+++|.+|+.+..+.+.+++ |+ ..+.|+.|+..+...+|...+...+..+++..+..|+..+.|. .+++
T Consensus 144 EEP--p~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd-lR~A 217 (605)
T PRK05896 144 EEP--PKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS-LRDG 217 (605)
T ss_pred HhC--CCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-HHHH
Confidence 864 3456777777888899999988 88 6899999999999999999888877778888899999988874 4444
Q ss_pred HHHHHHHHH
Q 001066 900 QALCTQAAI 908 (1167)
Q Consensus 900 ~~Lv~~A~~ 908 (1167)
.+++.....
T Consensus 218 lnlLekL~~ 226 (605)
T PRK05896 218 LSILDQLST 226 (605)
T ss_pred HHHHHHHHh
Confidence 444454333
No 123
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.37 E-value=6.3e-12 Score=157.18 Aligned_cols=182 Identities=21% Similarity=0.271 Sum_probs=125.7
Q ss_pred cCcccccChHHHHH---HHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 683 EGFESVAGLQDVIR---CMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~---~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+|++++|.+.++. .|..++.. ....++||+||||||||++|++||+.+. ..|+.+++.
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~-----~~f~~lna~ 86 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTR-----AHFSSLNAV 86 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhc-----Ccceeehhh
Confidence 57899999999885 45554432 2335799999999999999999999875 344444432
Q ss_pred ccchhhhchHHHHHHHHHHHHH-----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAE-----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~-----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
.. -. ..++.++..+. .....||||||||.+.. ..+..|+..++ .+.+++|++|
T Consensus 87 ~~---~i----~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-----------~qQdaLL~~lE----~g~IiLI~aT 144 (725)
T PRK13341 87 LA---GV----KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-----------AQQDALLPWVE----NGTITLIGAT 144 (725)
T ss_pred hh---hh----HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-----------HHHHHHHHHhc----CceEEEEEec
Confidence 11 01 11222232221 12457999999998864 33456666555 3567788766
Q ss_pred CC--CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhc-------cCCCCCChhHHHHHHHHccCCcHHHHHHHHHH
Q 001066 835 NR--PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTE-------RWPKPVTGSLLKWIAARTAGFAGADLQALCTQ 905 (1167)
Q Consensus 835 N~--~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~-------~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~ 905 (1167)
+. ...+++++++ |+ ..+.|++++.+++..||+..+. .....+++..+..|+..+.| ..+.+.++++.
T Consensus 145 Tenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~ 220 (725)
T PRK13341 145 TENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALEL 220 (725)
T ss_pred CCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 43 3467889988 76 6789999999999999998876 34466788999999998865 45555566666
Q ss_pred HHH
Q 001066 906 AAI 908 (1167)
Q Consensus 906 A~~ 908 (1167)
+..
T Consensus 221 a~~ 223 (725)
T PRK13341 221 AVE 223 (725)
T ss_pred HHH
Confidence 554
No 124
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.37 E-value=1.4e-11 Score=134.38 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=124.5
Q ss_pred cCccccc--ChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 683 EGFESVA--GLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 683 ~~~ddL~--Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
.+|++++ +...+...+..+.. +.....+++|+||+|||||+||+++++.+..... .++.+++..
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~--~~~~i~~~~ 80 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGR--NARYLDAAS 80 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC--cEEEEehHH
Confidence 3566654 33455555555432 1234568999999999999999999998754333 334444433
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC-CC-
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR-PE- 838 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~-~d- 838 (1167)
+... + .......+|||||+|.+.. ..+..|+.+++.....+..++|.+++. +.
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l~~-----------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~ 135 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERLDD-----------AQQIALFNLFNRVRAHGQGALLVAGPAAPLA 135 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhcCc-----------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHHh
Confidence 2211 1 1123467999999998753 234456667766555555434434433 32
Q ss_pred -cCCcccCCCCCc--ccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 001066 839 -AVDPALRRPGRF--DREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALK 912 (1167)
Q Consensus 839 -~Ld~aLlrpgRF--~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~ 912 (1167)
.+.+.|.+ || ...|.+++|+.+++..++..++...+..+++..+..|+....| +.+++..+++.-..+|..
T Consensus 136 ~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~ 209 (227)
T PRK08903 136 LPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLE 209 (227)
T ss_pred CCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH
Confidence 24466666 66 4688999999999999999888888888999999999996654 778888887765555533
No 125
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=7.5e-12 Score=153.93 Aligned_cols=192 Identities=20% Similarity=0.253 Sum_probs=140.8
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|.+.+++.|...+.. + ..++.+||+||+|+|||++|+.+|+.+.....
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 4799999999999999988754 1 33566899999999999999999999864211
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.+++... .....++.+...+.. ....|+||||+|.|.. ...+.|+..|
T Consensus 81 ~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLLk~L 143 (576)
T PRK14965 81 EITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALLKTL 143 (576)
T ss_pred HHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHHHHH
Confidence 122333333221 112234455544432 2346999999998874 4567888888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. ...++||.+|+.++.|.+.|++ |+ ..+.|..++..+....|..++...+..+++..+..|+..+.|.. +++
T Consensus 144 Eep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~l-r~a 217 (576)
T PRK14965 144 EEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSM-RDS 217 (576)
T ss_pred HcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-HHH
Confidence 864 3457777788888999999998 88 79999999999999999999888888888999999999998744 444
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+++..+..+
T Consensus 218 l~~Ldqliay 227 (576)
T PRK14965 218 LSTLDQVLAF 227 (576)
T ss_pred HHHHHHHHHh
Confidence 4555544443
No 126
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.37 E-value=6.2e-12 Score=146.29 Aligned_cols=175 Identities=25% Similarity=0.380 Sum_probs=123.5
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhcc-CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch-hh
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNL-GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG-KY 765 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~l-gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls-~~ 765 (1167)
|+|++++++.+.-++............+ .-.++.+|||+||||||||++|++||..++ .+|+.++...+.. .|
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~-----~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVGY 88 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC-----CeEEEeecceeecCCc
Confidence 6999999999988776532222211111 123458999999999999999999999987 6777777665542 45
Q ss_pred hc-hHHHHHHHHHHHH----------------------------------------------------------------
Q 001066 766 VG-DAERQLRLLFQVA---------------------------------------------------------------- 780 (1167)
Q Consensus 766 ~g-~~e~~L~~lF~~A---------------------------------------------------------------- 780 (1167)
.| +.+..++.+|..|
T Consensus 89 vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~ 168 (441)
T TIGR00390 89 VGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDK 168 (441)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCc
Confidence 55 3444444443332
Q ss_pred ---------------------------------------------------------------------------HhcCC
Q 001066 781 ---------------------------------------------------------------------------EKCQP 785 (1167)
Q Consensus 781 ---------------------------------------------------------------------------~~~~p 785 (1167)
+..+.
T Consensus 169 ~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~ 248 (441)
T TIGR00390 169 EIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQS 248 (441)
T ss_pred EEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Confidence 01356
Q ss_pred cEEEEcCCCCcCcccCcc-cccchHHHHHHHHHHhhcc--------cCCCceEEEccCC----CCCcCCcccCCCCCccc
Q 001066 786 SIIFFDEIDGLAPCRTRQ-QDQTHSSVVSTLLALMDGL--------KSRGSVVVIGATN----RPEAVDPALRRPGRFDR 852 (1167)
Q Consensus 786 sILfIDEID~L~~~~~~~-~~~~~~~vl~~LL~lLd~l--------~~~~~ViVIaTTN----~~d~Ld~aLlrpgRF~~ 852 (1167)
+||||||||.|..+.... .+....-+++.||.+|++- -...+++||++.. .|..|-|.|.- ||+.
T Consensus 249 GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi 326 (441)
T TIGR00390 249 GIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPI 326 (441)
T ss_pred CEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccce
Confidence 899999999999754322 2344556999999999873 2345788888763 35667777864 9999
Q ss_pred ccccCCCCHHHHHHHHH
Q 001066 853 EIYFPLPSMEDRAAILS 869 (1167)
Q Consensus 853 ~I~~~~P~~eER~eIL~ 869 (1167)
.+.+..++.++...||.
T Consensus 327 ~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 327 RVELQALTTDDFERILT 343 (441)
T ss_pred EEECCCCCHHHHHHHhc
Confidence 99999999999999993
No 127
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.36 E-value=1.2e-11 Score=145.97 Aligned_cols=216 Identities=21% Similarity=0.244 Sum_probs=136.3
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhc---cCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc-h
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDN---LGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL-G 763 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~---lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll-s 763 (1167)
|+|++.+++.|..++..+......... -...+..++||+||||||||++|++||..+. .+|+.+++..+. .
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~-----~pf~~id~~~l~~~ 147 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD-----VPFAIADATTLTEA 147 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC-----CCceecchhhcccC
Confidence 699999999998776543222111000 0112457899999999999999999999886 577777776654 3
Q ss_pred hhhchH-HHHHHHHHHH----HHhcCCcEEEEcCCCCcCcccCc---ccccchHHHHHHHHHHhhcc----cC-------
Q 001066 764 KYVGDA-ERQLRLLFQV----AEKCQPSIIFFDEIDGLAPCRTR---QQDQTHSSVVSTLLALMDGL----KS------- 824 (1167)
Q Consensus 764 ~~~g~~-e~~L~~lF~~----A~~~~psILfIDEID~L~~~~~~---~~~~~~~~vl~~LL~lLd~l----~~------- 824 (1167)
.|+|.. +..+..++.. .....++||||||||.+..++.. ..+.....+++.||.+|++. ..
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 466653 3444554442 23457899999999999864211 11222346889999999853 11
Q ss_pred CCceEEEccCCCCC----------------------------------------------------cCCcccCCCCCccc
Q 001066 825 RGSVVVIGATNRPE----------------------------------------------------AVDPALRRPGRFDR 852 (1167)
Q Consensus 825 ~~~ViVIaTTN~~d----------------------------------------------------~Ld~aLlrpgRF~~ 852 (1167)
...+++|.|+|... -+.|.|+. |++.
T Consensus 228 ~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~ 305 (412)
T PRK05342 228 QQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPV 305 (412)
T ss_pred CCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCe
Confidence 12345555555410 02344544 8888
Q ss_pred ccccCCCCHHHHHHHHHH----hhcc---------CCCCCChhHHHHHHHH--ccCCcHHHHHHHHHHHHHHH
Q 001066 853 EIYFPLPSMEDRAAILSL----HTER---------WPKPVTGSLLKWIAAR--TAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 853 ~I~~~~P~~eER~eIL~~----~l~~---------~~~~l~d~~L~~LA~~--t~G~s~aDL~~Lv~~A~~~A 910 (1167)
++.|.+++.+++.+|+.. ++.+ ..+.+++..+..|++. ...+-.+-|+.+++....-.
T Consensus 306 iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 306 VATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 999999999999999872 2221 2234566777777775 33455566666666554433
No 128
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=9e-12 Score=152.32 Aligned_cols=192 Identities=21% Similarity=0.263 Sum_probs=139.4
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|++.+++.|+..+.. + ..++.+||+||+|+|||++|+++|+.+.....
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~ 80 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHH
Confidence 4799999999999999998854 1 23456999999999999999999999864210
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.+++..- ..-..++.+.+.+. .....|+||||+|.|.. ..++.|+..|
T Consensus 81 ~i~~~~~~dv~~idgas~------~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naLLK~L 143 (563)
T PRK06647 81 SIDNDNSLDVIEIDGASN------TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNALLKTI 143 (563)
T ss_pred HHHcCCCCCeEEecCccc------CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHHHHhh
Confidence 122333322110 11123344443332 24557999999998864 4567788888
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+. +...+++|.+|+.+..+.++|++ |+ ..+.|..|+.++..++|+..+...+..+++..+..|+..+.| +.+++
T Consensus 144 Ee--pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~a 217 (563)
T PRK06647 144 EE--PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDA 217 (563)
T ss_pred cc--CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 85 34467777777778889899988 88 678999999999999999988887888889999999998887 55566
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+++.++..+
T Consensus 218 lslLdklis~ 227 (563)
T PRK06647 218 YTLFDQVVSF 227 (563)
T ss_pred HHHHHHHHhh
Confidence 6666655443
No 129
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.35 E-value=5.7e-12 Score=146.66 Aligned_cols=175 Identities=26% Similarity=0.376 Sum_probs=123.4
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCC-CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch-hh
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGL-TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG-KY 765 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl-~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls-~~ 765 (1167)
|+|++++++.+..++........+...+.. ..+.++||+||||+|||++|++||..++ .+|+.+++..+.. .|
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~-----~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVGY 91 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC-----ChheeecchhhccCCc
Confidence 799999999998887543222211111110 1257899999999999999999999987 5677776665553 45
Q ss_pred hc-hHHHHHHHHHHHH----------------------------------------------------------------
Q 001066 766 VG-DAERQLRLLFQVA---------------------------------------------------------------- 780 (1167)
Q Consensus 766 ~g-~~e~~L~~lF~~A---------------------------------------------------------------- 780 (1167)
.| +.+..++.+|..|
T Consensus 92 vG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~ 171 (443)
T PRK05201 92 VGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDK 171 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCc
Confidence 55 3344444444433
Q ss_pred ------------------------------------------------------------------------H--hcCCc
Q 001066 781 ------------------------------------------------------------------------E--KCQPS 786 (1167)
Q Consensus 781 ------------------------------------------------------------------------~--~~~ps 786 (1167)
. ..+.+
T Consensus 172 ~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~G 251 (443)
T PRK05201 172 EIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNG 251 (443)
T ss_pred EEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Confidence 0 12567
Q ss_pred EEEEcCCCCcCcccCc-ccccchHHHHHHHHHHhhcc--------cCCCceEEEccCC----CCCcCCcccCCCCCcccc
Q 001066 787 IIFFDEIDGLAPCRTR-QQDQTHSSVVSTLLALMDGL--------KSRGSVVVIGATN----RPEAVDPALRRPGRFDRE 853 (1167)
Q Consensus 787 ILfIDEID~L~~~~~~-~~~~~~~~vl~~LL~lLd~l--------~~~~~ViVIaTTN----~~d~Ld~aLlrpgRF~~~ 853 (1167)
||||||||.|..+... ..+....-+++.||.+|++- -...+|+||++.. .|..|-|.|.- ||+.+
T Consensus 252 IVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~ 329 (443)
T PRK05201 252 IVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIR 329 (443)
T ss_pred EEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceE
Confidence 9999999999975432 23344566999999999873 2345788888763 35667788865 99999
Q ss_pred cccCCCCHHHHHHHHH
Q 001066 854 IYFPLPSMEDRAAILS 869 (1167)
Q Consensus 854 I~~~~P~~eER~eIL~ 869 (1167)
+.+..++.++...||.
T Consensus 330 v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 330 VELDALTEEDFVRILT 345 (443)
T ss_pred EECCCCCHHHHHHHhc
Confidence 9999999999999994
No 130
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=1.7e-11 Score=150.61 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=140.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR------------ 750 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~------------ 750 (1167)
.+|++|+|++.+++.|..++.. + ..+..+||+||+|+|||++|+.+|+.+......
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 4899999999999999998754 2 345689999999999999999999988643210
Q ss_pred ------------eEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHH
Q 001066 751 ------------IAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVST 814 (1167)
Q Consensus 751 ------------i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~ 814 (1167)
..++.++.... ..-..++.++..+.. ....|+||||+|.|.. ...+.
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~------~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~na 151 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASH------TGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNA 151 (598)
T ss_pred cHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHH
Confidence 11222222110 112345556555543 2457999999998864 45678
Q ss_pred HHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCC
Q 001066 815 LLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGF 894 (1167)
Q Consensus 815 LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~ 894 (1167)
|+..|+... ..++||.+|+.++.+.+.+++ |+ ..|.|..|+.++...+|...+...+..+++..+..|+..+.|
T Consensus 152 LLKtLEePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G- 225 (598)
T PRK09111 152 LLKTLEEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG- 225 (598)
T ss_pred HHHHHHhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888643 345666677777788888888 88 789999999999999999999888888888999999998877
Q ss_pred cHHHHHHHHHHHHHH
Q 001066 895 AGADLQALCTQAAII 909 (1167)
Q Consensus 895 s~aDL~~Lv~~A~~~ 909 (1167)
+.+++.+++..+..+
T Consensus 226 dlr~al~~Ldkli~~ 240 (598)
T PRK09111 226 SVRDGLSLLDQAIAH 240 (598)
T ss_pred CHHHHHHHHHHHHhh
Confidence 555565666555444
No 131
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.35 E-value=3.8e-11 Score=136.64 Aligned_cols=182 Identities=22% Similarity=0.230 Sum_probs=128.2
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|.+++++.+..++... ...++||+||||+|||+++++++..+........++.++..+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 47999999999999999887541 12358999999999999999999998644333445555433221
Q ss_pred hhhhchHHHHHHHHH-HHHHh-----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 763 GKYVGDAERQLRLLF-QVAEK-----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF-~~A~~-----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
.. ..+...+ ..+.. ..+.+|+|||+|.+.. ..+..|+..++..... ..+|.+++.
T Consensus 81 ~~------~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~le~~~~~--~~lIl~~~~ 141 (319)
T PRK00440 81 GI------DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTMEMYSQN--TRFILSCNY 141 (319)
T ss_pred ch------HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHHhcCCCC--CeEEEEeCC
Confidence 10 1111111 11211 2346999999998864 3345677777765443 345556677
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+..+.+.+.+ |+ ..++|++|+.++...+++.++...+..+++..+..|+..+.|.....+
T Consensus 142 ~~~l~~~l~s--r~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 142 SSKIIDPIQS--RC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred ccccchhHHH--Hh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 7777777877 77 568999999999999999999888888889999999998877544433
No 132
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.8e-11 Score=147.60 Aligned_cols=192 Identities=20% Similarity=0.223 Sum_probs=135.8
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++++|++.+.+.|...+.. + ..++.+||+||+|+|||++|+.+|..+.....
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL-----------Q-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 4799999999999999988754 1 23456789999999999999999998763110
Q ss_pred ------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 750 ------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 750 ------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
...++.++.+.. .....++.+...+.. ....|+||||+|.|.. ..++.|+..|
T Consensus 81 ~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~L 143 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTL 143 (486)
T ss_pred HHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHH
Confidence 011222222110 111223444444332 3457999999998864 4456778777
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. ...+++|.+|+.++.+.+++.+ |+ ..+.|++|+.++...+|..++...+..+++..+..|+..+.| +.+++
T Consensus 144 Eep--p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~a 217 (486)
T PRK14953 144 EEP--PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDA 217 (486)
T ss_pred hcC--CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 754 3345555566677788888887 87 689999999999999999999988888888899999998876 45556
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+++..+..+
T Consensus 218 l~~Ldkl~~~ 227 (486)
T PRK14953 218 ASLLDQASTY 227 (486)
T ss_pred HHHHHHHHHh
Confidence 6666666544
No 133
>PRK08727 hypothetical protein; Validated
Probab=99.33 E-value=6.4e-11 Score=130.22 Aligned_cols=155 Identities=21% Similarity=0.307 Sum_probs=107.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCccc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCR 800 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~ 800 (1167)
..++|+||+|||||+|++++++.+......+.|+.. ..+ ...+..++... ....+|+||||+.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~--~~~--------~~~~~~~~~~l--~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL--QAA--------AGRLRDALEAL--EGRSLVALDGLESIAGQR 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH--HHh--------hhhHHHHHHHH--hcCCEEEEeCcccccCCh
Confidence 459999999999999999999987765544444442 221 12222333332 355799999999887421
Q ss_pred CcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC---CcccCCCCCc--ccccccCCCCHHHHHHHHHHhhccC
Q 001066 801 TRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV---DPALRRPGRF--DREIYFPLPSMEDRAAILSLHTERW 875 (1167)
Q Consensus 801 ~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L---d~aLlrpgRF--~~~I~~~~P~~eER~eIL~~~l~~~ 875 (1167)
.....++.+++.....+.-+|+.+...|..+ ++.|++ || ...+.|++|+.+++.+||+.++...
T Consensus 110 ---------~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 ---------EDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred ---------HHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 1123555666655444433444444456554 688888 86 5678999999999999999987766
Q ss_pred CCCCChhHHHHHHHHccCCcHHH
Q 001066 876 PKPVTGSLLKWIAARTAGFAGAD 898 (1167)
Q Consensus 876 ~~~l~d~~L~~LA~~t~G~s~aD 898 (1167)
+..+++..+..|+.++.|.....
T Consensus 179 ~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 179 GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCCCCHHHHHHHHHhCCCCHHHH
Confidence 78889999999999988644443
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=1.9e-11 Score=146.31 Aligned_cols=193 Identities=19% Similarity=0.224 Sum_probs=135.0
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------- 748 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------- 748 (1167)
.+|++|+|.+.++..|...+.. + ..+..+||+||+|+|||++|+++|+.+....
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 4899999999999999988754 1 3356799999999999999999999875421
Q ss_pred ------CceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc
Q 001066 749 ------KRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL 822 (1167)
Q Consensus 749 ------~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l 822 (1167)
....++.+++....+ +.+.......+..........||||||+|.+.. ..++.|+..|+..
T Consensus 82 ~~i~~~~~~d~~~i~g~~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~LLk~lEep 148 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSLLKTLEEP 148 (451)
T ss_pred HHHhcCCCCceEEeeccccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHHHHHhhcC
Confidence 012233333221110 111111111111111234568999999998864 4567888888864
Q ss_pred cCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHH
Q 001066 823 KSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQAL 902 (1167)
Q Consensus 823 ~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~L 902 (1167)
.+.+++|.+|+.+..|.+.|++ |+ ..++|+.++.++...+|...+...+..+++..+..|+..+.| +.+.+.++
T Consensus 149 --~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~ 222 (451)
T PRK06305 149 --PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESL 222 (451)
T ss_pred --CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 3456677777888888899988 88 689999999999999999988887777888899999998876 33344444
Q ss_pred HHHH
Q 001066 903 CTQA 906 (1167)
Q Consensus 903 v~~A 906 (1167)
+...
T Consensus 223 Lekl 226 (451)
T PRK06305 223 YDYV 226 (451)
T ss_pred HHHH
Confidence 4433
No 135
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=3.7e-11 Score=141.96 Aligned_cols=193 Identities=17% Similarity=0.235 Sum_probs=134.4
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|++.+++.|..++.. + ..+..+||+||||+|||++|+++|+.+.....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 4799999999999999888754 2 34566999999999999999999999864210
Q ss_pred --------------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHH
Q 001066 750 --------------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSV 811 (1167)
Q Consensus 750 --------------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~v 811 (1167)
..+++.+++... .....++.+.+.+.. ....||||||+|.+.. ..
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-----------~~ 143 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-----------AA 143 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-----------HH
Confidence 011222222111 012334444444421 2346999999998864 34
Q ss_pred HHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHc
Q 001066 812 VSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAART 891 (1167)
Q Consensus 812 l~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t 891 (1167)
++.|+..|+... ...++|.+|+.+..+.+.|++ |+ ..++|++++.++....+...+...+..+++..+..|+..+
T Consensus 144 ~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 144 FNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 567777777543 345555566667788888887 77 6899999999999999999888777778899999999988
Q ss_pred cCCcHHHHHHHHHHHHHHH
Q 001066 892 AGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 892 ~G~s~aDL~~Lv~~A~~~A 910 (1167)
.| +.+.+.+++..+..++
T Consensus 219 ~g-~lr~a~~~L~kl~~~~ 236 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAFS 236 (397)
T ss_pred CC-CHHHHHHHHHHHHHhc
Confidence 76 4444555555544443
No 136
>PRK05642 DNA replication initiation factor; Validated
Probab=99.29 E-value=7.2e-11 Score=129.90 Aligned_cols=169 Identities=20% Similarity=0.244 Sum_probs=117.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~ 799 (1167)
..+++|+||+|+|||+|++++++++......+ ++++..+++.. ...+++... ...+|+||||+.+.++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v--~y~~~~~~~~~--------~~~~~~~~~--~~d~LiiDDi~~~~~~ 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPA--VYLPLAELLDR--------GPELLDNLE--QYELVCLDDLDVIAGK 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcE--EEeeHHHHHhh--------hHHHHHhhh--hCCEEEEechhhhcCC
Confidence 36799999999999999999998876433333 34444444321 112222222 3368999999988642
Q ss_pred cCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC---CcccCCCCCc--ccccccCCCCHHHHHHHHHHhhcc
Q 001066 800 RTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV---DPALRRPGRF--DREIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 800 ~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L---d~aLlrpgRF--~~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
. .....|+.+++.+...++.+||+++..|..+ .+.|++ || ...+.+..|+.+++..|++..+..
T Consensus 113 ~---------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 113 A---------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred h---------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1 2234677777777677777888777666543 688888 87 466778999999999999977766
Q ss_pred CCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 001066 875 WPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALK 912 (1167)
Q Consensus 875 ~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~ 912 (1167)
.+..+++..+..|+.+..+ +.+.|..++..-...++.
T Consensus 182 ~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ 218 (234)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 6778899999999999886 555566555554444443
No 137
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.29 E-value=5e-11 Score=140.30 Aligned_cols=216 Identities=23% Similarity=0.278 Sum_probs=135.5
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhc----cCC-CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDN----LGL-TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~----lgl-~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
|+|++++++.+..++............ .++ ....+|||+||||||||++|++||..++ ++|..+++..+.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-----~pf~~~da~~L~ 153 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-----VPFAIADATTLT 153 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-----CCeEEechhhcc
Confidence 599999999998776432221111000 011 1246899999999999999999998876 566666665543
Q ss_pred -hhhhchH-HHHHHHHHHHH----HhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHhhcccC---------
Q 001066 763 -GKYVGDA-ERQLRLLFQVA----EKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALMDGLKS--------- 824 (1167)
Q Consensus 763 -s~~~g~~-e~~L~~lF~~A----~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lLd~l~~--------- 824 (1167)
..|+|.. +..+..++..+ ....++||||||||.+..+.... .+.....+++.||.+|++...
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~ 233 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK 233 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCcc
Confidence 2466663 44455554422 34577899999999998642211 122234688999999976421
Q ss_pred --CCceEEEccCCCCC--------------------------------------------------cCCcccCCCCCccc
Q 001066 825 --RGSVVVIGATNRPE--------------------------------------------------AVDPALRRPGRFDR 852 (1167)
Q Consensus 825 --~~~ViVIaTTN~~d--------------------------------------------------~Ld~aLlrpgRF~~ 852 (1167)
...+++|.|+|-.. -+.|+|+. |++.
T Consensus 234 ~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~ 311 (413)
T TIGR00382 234 HPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPV 311 (413)
T ss_pred ccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCe
Confidence 22467777776510 02245544 8888
Q ss_pred ccccCCCCHHHHHHHHHHh----hc---------cCCCCCChhHHHHHHHHc--cCCcHHHHHHHHHHHHHHH
Q 001066 853 EIYFPLPSMEDRAAILSLH----TE---------RWPKPVTGSLLKWIAART--AGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 853 ~I~~~~P~~eER~eIL~~~----l~---------~~~~~l~d~~L~~LA~~t--~G~s~aDL~~Lv~~A~~~A 910 (1167)
++.|.+.+.+++.+|+... +. ...+.+++..+..|++.. ..+-.+.|+.++++....+
T Consensus 312 Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 312 IATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred EeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 8899999999999988652 22 122335667777777753 3455666666666555443
No 138
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.1e-10 Score=136.21 Aligned_cols=208 Identities=23% Similarity=0.309 Sum_probs=143.0
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhh-
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYV- 766 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~- 766 (1167)
+.+.+..+.++...+...+. + ..|.+++++|+||||||++++.++.++........+++++|...-+.|.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--------~-~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--------G-ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--------C-CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 78999999999888755332 1 3455699999999999999999999987654444466666655433211
Q ss_pred --------------ch-HHHHHHHHHHHHHh-cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEE
Q 001066 767 --------------GD-AERQLRLLFQVAEK-CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVV 830 (1167)
Q Consensus 767 --------------g~-~e~~L~~lF~~A~~-~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViV 830 (1167)
|. ....+..+++.... ....||+|||+|.|..... .++..|+...... ..++.+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~v 159 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSI 159 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEE
Confidence 11 12223334443333 4567999999999986322 5666666655544 556889
Q ss_pred EccCCCCC---cCCcccCCCCCc-ccccccCCCCHHHHHHHHHHhhcc--CCCCCChhHHHHHHHHccCCcH--HHHHHH
Q 001066 831 IGATNRPE---AVDPALRRPGRF-DREIYFPLPSMEDRAAILSLHTER--WPKPVTGSLLKWIAARTAGFAG--ADLQAL 902 (1167)
Q Consensus 831 IaTTN~~d---~Ld~aLlrpgRF-~~~I~~~~P~~eER~eIL~~~l~~--~~~~l~d~~L~~LA~~t~G~s~--aDL~~L 902 (1167)
|+.+|..+ .+++.+.+ +| ...|.||+++.+|...||...... ....+++..+..+|...+...| +---.+
T Consensus 160 i~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 160 IAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred EEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 99998864 57888887 54 345899999999999999988774 3455677777777765543332 223377
Q ss_pred HHHHHHHHHHcCCC
Q 001066 903 CTQAAIIALKRNFP 916 (1167)
Q Consensus 903 v~~A~~~A~~R~i~ 916 (1167)
++.|+..|.+++.+
T Consensus 238 lr~A~eiAe~~~~~ 251 (366)
T COG1474 238 LRRAGEIAEREGSR 251 (366)
T ss_pred HHHHHHHHHhhCCC
Confidence 88999999877643
No 139
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.28 E-value=2e-11 Score=146.00 Aligned_cols=199 Identities=19% Similarity=0.243 Sum_probs=148.4
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC--ceEEEEe-ccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK--RIAYFAR-KGA 759 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~--~i~~~~l-~~~ 759 (1167)
..|++++|++.+.+.|..++..- ......||.||.|||||++||.+|..+..... .-++-.+ .|.
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 47999999999999999998652 33467999999999999999999999876431 1111111 000
Q ss_pred ccc-hhhh---------chHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCC
Q 001066 760 DCL-GKYV---------GDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSR 825 (1167)
Q Consensus 760 ~ll-s~~~---------g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~ 825 (1167)
.+. +.++ ...-..++.+.+.+. ...+.|++|||+|.|.. ...+.||..|+. +.
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE--PP 147 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE--PP 147 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc--Cc
Confidence 000 0000 011223455554443 34567999999999975 566677777764 34
Q ss_pred CceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHH
Q 001066 826 GSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQ 905 (1167)
Q Consensus 826 ~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~ 905 (1167)
..|++|.+|+.+..++..+++ |+ +.+.|...+.++....|..++......+++..+..||+...| +.+|...|+.+
T Consensus 148 ~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq 223 (515)
T COG2812 148 SHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQ 223 (515)
T ss_pred cCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHH
Confidence 568999999999999999999 98 889999999999999999999999999999999999999987 66777778888
Q ss_pred HHHHH
Q 001066 906 AAIIA 910 (1167)
Q Consensus 906 A~~~A 910 (1167)
|....
T Consensus 224 ~i~~~ 228 (515)
T COG2812 224 AIAFG 228 (515)
T ss_pred HHHcc
Confidence 77664
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=5.6e-11 Score=146.91 Aligned_cols=187 Identities=22% Similarity=0.265 Sum_probs=136.8
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR------------ 750 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~------------ 750 (1167)
..|++|+|.+.+++.|..++... ....++||+||+|+|||++|+++|+.+......
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 47999999999999999887651 234579999999999999999999998653110
Q ss_pred ---------eEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHH
Q 001066 751 ---------IAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLA 817 (1167)
Q Consensus 751 ---------i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~ 817 (1167)
..++.++.. .......++.++..+.. ....||||||+|.|.. ..++.|+.
T Consensus 81 C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~naLLK 143 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNALLK 143 (620)
T ss_pred HHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHHHHH
Confidence 112222211 11223455666655543 2346999999998864 56678888
Q ss_pred HhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHH
Q 001066 818 LMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGA 897 (1167)
Q Consensus 818 lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~a 897 (1167)
.|+.. ...+++|++|+.+..+.+.|++ |+ ..+.|+.++.++....|.+++...+..+++..+..|+..+.|.. +
T Consensus 144 ~LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l-r 217 (620)
T PRK14948 144 TLEEP--PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL-R 217 (620)
T ss_pred HHhcC--CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-H
Confidence 88853 3457777777888888889988 88 78899999999999999998888777788888999999988755 4
Q ss_pred HHHHHHH
Q 001066 898 DLQALCT 904 (1167)
Q Consensus 898 DL~~Lv~ 904 (1167)
++.++++
T Consensus 218 ~A~~lLe 224 (620)
T PRK14948 218 DAESLLD 224 (620)
T ss_pred HHHHHHH
Confidence 4434444
No 141
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=7.6e-11 Score=145.62 Aligned_cols=189 Identities=19% Similarity=0.224 Sum_probs=133.0
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|++.+++.|+..+... ..+..+||+||+|+|||++|+.+|+.+.....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c 80 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMC 80 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHH
Confidence 47999999999999998887541 23456899999999999999999998753211
Q ss_pred -------ceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHH
Q 001066 750 -------RIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLAL 818 (1167)
Q Consensus 750 -------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~l 818 (1167)
...++.++..... ....++.+...+.. ....||||||+|.|.. ..++.|+..
T Consensus 81 ~~i~~~~~~d~~~i~~~~~~------~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naLLk~ 143 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAASHT------SVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNALLKT 143 (585)
T ss_pred HHHhcCCCCeEEEEeccccC------CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHHHHH
Confidence 0122222221110 11223333333222 3456999999998864 456678888
Q ss_pred hhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHH
Q 001066 819 MDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGAD 898 (1167)
Q Consensus 819 Ld~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aD 898 (1167)
|+... ..++||.+++..+.+.+.|++ |+ ..+.|+.++..+...++...+...+..+++..+..|+..+.| +.++
T Consensus 144 LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~ 217 (585)
T PRK14950 144 LEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRD 217 (585)
T ss_pred HhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 87643 345666667777778888887 77 678999999999999999998888878888889999998887 5555
Q ss_pred HHHHHHHH
Q 001066 899 LQALCTQA 906 (1167)
Q Consensus 899 L~~Lv~~A 906 (1167)
+.+++...
T Consensus 218 al~~LekL 225 (585)
T PRK14950 218 AENLLQQL 225 (585)
T ss_pred HHHHHHHH
Confidence 55555543
No 142
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3e-12 Score=144.57 Aligned_cols=56 Identities=30% Similarity=0.497 Sum_probs=53.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhccC
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMFSF 1166 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~~~ 1166 (1167)
++|++|||||||||||||||+++ | .+||+|--|+|.|||.|||||=||=+|....|
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc-~-tTFFNVSsstltSKwRGeSEKlvRlLFemARf 302 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATEC-G-TTFFNVSSSTLTSKWRGESEKLVRLLFEMARF 302 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhh-c-CeEEEechhhhhhhhccchHHHHHHHHHHHHH
Confidence 59999999999999999999999 4 99999999999999999999999999987655
No 143
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.26 E-value=6.5e-11 Score=147.95 Aligned_cols=329 Identities=14% Similarity=0.109 Sum_probs=185.2
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe-cccccchhhhc----hHHHHHHHHHHHHHhcCCcEEEEcC
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR-KGADCLGKYVG----DAERQLRLLFQVAEKCQPSIIFFDE 792 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l-~~~~lls~~~g----~~e~~L~~lF~~A~~~~psILfIDE 792 (1167)
....+|+|.|+.|+|||.|...||.+++....+++.-.. ++..+.+.|.. +++- ...++..|-. ...-|+|.+
T Consensus 147 ~~~~pI~l~g~~gsgksfLisel~~~~G~~iV~Ihl~e~TDak~LiGtYts~KpG~fEw-~~GvL~~avv-~G~WILf~~ 224 (4600)
T COG5271 147 KIAVPIYLEGGRGSGKSFLISELCDEGGQRIVEIHLREITDAKVLIGTYTSPKPGDFEW-MKGVLIEAVV-SGDWILFKR 224 (4600)
T ss_pred hhccceEEecCccccHHHHHHHHHHHhCceEEEEecccccCchheeeeccCCCCCceee-ccchhhhhhh-cCcEEEEee
Confidence 456789999999999999999999999854444443333 33333444443 2221 2233333322 223488888
Q ss_pred CCCcCcccCcccccchHHHHHHHHHHhhcc-----------cCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCH
Q 001066 793 IDGLAPCRTRQQDQTHSSVVSTLLALMDGL-----------KSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSM 861 (1167)
Q Consensus 793 ID~L~~~~~~~~~~~~~~vl~~LL~lLd~l-----------~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~ 861 (1167)
||.... .+++-|+.+|+.. ...+++.+++|+..... ++ ..|+++++.+..|+.
T Consensus 225 Idkap~-----------~vLs~Ll~llekR~L~ipsrGEtV~A~~~Fqif~Tss~k~~----il-g~rlw~ildl~qpde 288 (4600)
T COG5271 225 IDKAPH-----------GVLSYLLTLLEKRRLLIPSRGETVLAHDNFQIFFTSSMKTK----IL-GQRLWQILDLTQPDE 288 (4600)
T ss_pred cccCch-----------hHHHHHHHHHHhhhhccCCCCceEEecCCEEEEEeccchhh----Hh-HHHHHhhhcccCchH
Confidence 987653 7888888888752 23456888877544322 22 348889999997765
Q ss_pred HHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHH---cCCChHHHHHHHHH--HhhccccccC
Q 001066 862 EDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALK---RNFPLQEILSAAAE--KAFCSKRVTL 936 (1167)
Q Consensus 862 eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~---R~i~~~di~~~~e~--~~~~~~~~~l 936 (1167)
..+|++...+......+ ..+ ....+|..+..+....++. |-+.+++.+..... ..........
T Consensus 289 --~~~vv~~~~p~l~~v~P-~l~---------~~yk~I~~~~~q~~f~~l~K~~rv~~~rd~~k~v~rv~~l~~~~~i~s 356 (4600)
T COG5271 289 --CVEVVRFDMPDLVFVGP-LLF---------VFYKAIEMFEAQCTFRLLTKIYRVFRDRDADKKVCRVTKLKEGECIKS 356 (4600)
T ss_pred --HHHHHHhcCchheeecc-hHH---------HHHHHHHHHHHhhHHHHhhhhheeeehhhHHHHHHHHHHHHhccCCCC
Confidence 77777765554322111 111 0122333332222222222 23334444432221 1111111111
Q ss_pred CccccCHHHHHHHhhcCCCCCCcccccccccccccCCCCCCccccccchhhhhhhhhhhhccccCCcchhHHHHHHHHHH
Q 001066 937 PSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSSPLPSHLIPCLLQPLSTLLVSLYLDERLWLPPSLTKATKMIQSVI 1016 (1167)
Q Consensus 937 ~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~~~iip~v~w~l~~l~~~~~l~E~l~L~~~~~~~~~~i~~~i 1016 (1167)
+...|. ..-+..++..+.+||++.||.- ..-..+...+++.+.++++. .-.+
T Consensus 357 ~~~~I~-------------~~~~d~~f~eavdcf~~~ip~f--------~~l~~I~k~~g~sl~i~~e~-------~l~l 408 (4600)
T COG5271 357 CPKRIC-------------GNNEDCLFEEAVDCFGAFIPHF--------RSLLKIKKRMGSSLGIGVEE-------RLRL 408 (4600)
T ss_pred Cchhhc-------------cchHHHHHHHHHHhhccccchh--------hhHHHHHHHhhhhcCCChHH-------hhhH
Confidence 111111 1113334666778999888751 11112233344444444443 1112
Q ss_pred HhhhhhhhccccccccchhhhHHHHHHHHHHHHHHhhcccccCCcccCCCccccCCCCCccCCCCCccccccccchhhhh
Q 001066 1017 VSALDKKKLLSDHWWSHINDFLEEADIAKEIERRLQYAGIITGEASFSGLDAFAGDSNDDCANSKPSIAHSYGINCSLLQ 1096 (1167)
Q Consensus 1017 ~~~l~~~~~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~~~~~~~~~~~~~~~~~~~f~~~~kp~~~~~~~~~~~~~~ 1096 (1167)
+..+|. +.++.+.++|+|..+.+.+.- -.+.+.++|+-|. ++..++
T Consensus 409 ~qsVp~-----------~~nL~h~i~igRc~L~k~~~~-------------i~s~s~nsfAfTs----------~sl~ll 454 (4600)
T COG5271 409 YQSVPN-----------VLNLKHEIDIGRCALTKTEIP-------------IISLSGNSFAFTS----------CSLWLL 454 (4600)
T ss_pred Hhccch-----------hhccccchhhhhhhhhhcccc-------------ceeecccceeehh----------hHHHHH
Confidence 333343 567778899999886655431 1345566788877 889999
Q ss_pred hhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEE
Q 001066 1097 NISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQK 1139 (1167)
Q Consensus 1097 ~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fis 1139 (1167)
++....++.++| +||+|.||||||.+...||.-+.-+|++++
T Consensus 455 eql~~~Iq~nep-~LLVGeTGtGKTT~IQ~La~~l~~kltvin 496 (4600)
T COG5271 455 EQLLWNIQNNEP-TLLVGETGTGKTTMIQYLALKLHFKLTVIN 496 (4600)
T ss_pred HHHHHHhccCCc-eEEEecCCCchhhHHHHHHHHhhhhheehh
Confidence 999999999999 999999999997655555554421355554
No 144
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.26 E-value=4.4e-10 Score=139.36 Aligned_cols=228 Identities=23% Similarity=0.350 Sum_probs=142.9
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEec
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARK 757 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~ 757 (1167)
.+|++|+|.+..++.+...+.. ..+.+++|+||||||||++|+++++...... ...+|+.++
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 5789999999999887666533 2345799999999999999999987764211 134567666
Q ss_pred ccccc-------hhhhchHHH----HHHHHHH----------HHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHH
Q 001066 758 GADCL-------GKYVGDAER----QLRLLFQ----------VAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLL 816 (1167)
Q Consensus 758 ~~~ll-------s~~~g~~e~----~L~~lF~----------~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL 816 (1167)
+..+- ..+++.... ..+..+. .......++|||||++.|.. ..+..|+
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-----------~~Q~~Ll 286 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-----------LLQNKLL 286 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-----------HHHHHHH
Confidence 65431 011111100 0011111 01122457999999998865 4556677
Q ss_pred HHhhccc--------------------------CCCceEEEcc-CCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHH
Q 001066 817 ALMDGLK--------------------------SRGSVVVIGA-TNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILS 869 (1167)
Q Consensus 817 ~lLd~l~--------------------------~~~~ViVIaT-TN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~ 869 (1167)
..|+... ....+++|++ |+.++.++++|++ || ..+.|++++.+++..|++
T Consensus 287 ~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~-~~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 287 KVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RC-AEVFFEPLTPEDIALIVL 363 (615)
T ss_pred HHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ce-eEEEeCCCCHHHHHHHHH
Confidence 6665311 1223566655 5667889999988 88 477899999999999999
Q ss_pred HhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCccccCHHHHHHH
Q 001066 870 LHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEA 949 (1167)
Q Consensus 870 ~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~A 949 (1167)
..+......+++..+..|+.++.. ....| +++..+..++..+.. ... .....+.|+.+|+.++
T Consensus 364 ~~a~~~~v~ls~eal~~L~~ys~~-gRral-n~L~~~~~~~~~~~~---------~~~------~~~~~~~I~~edv~~~ 426 (615)
T TIGR02903 364 NAAEKINVHLAAGVEELIARYTIE-GRKAV-NILADVYGYALYRAA---------EAG------KENDKVTITQDDVYEV 426 (615)
T ss_pred HHHHHcCCCCCHHHHHHHHHCCCc-HHHHH-HHHHHHHHHHHHHHH---------Hhc------cCCCCeeECHHHHHHH
Confidence 998877666778888888887652 23333 333333333222110 000 0012356889999999
Q ss_pred hhcCC
Q 001066 950 LSCSP 954 (1167)
Q Consensus 950 L~~~~ 954 (1167)
+...+
T Consensus 427 l~~~r 431 (615)
T TIGR02903 427 IQISR 431 (615)
T ss_pred hCCCc
Confidence 88554
No 145
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.26 E-value=1.6e-10 Score=129.13 Aligned_cols=133 Identities=25% Similarity=0.347 Sum_probs=92.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc------cccchhhhchHHHH-HH------------------
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG------ADCLGKYVGDAERQ-LR------------------ 774 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~------~~lls~~~g~~e~~-L~------------------ 774 (1167)
..+|||+||||||||++|+++|..++. +++.+++ .++++.+.+..... +.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV 95 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec
Confidence 467999999999999999999997763 4443322 33444333211111 00
Q ss_pred -HHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--------------CCCceEEEccCCCCC-
Q 001066 775 -LLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--------------SRGSVVVIGATNRPE- 838 (1167)
Q Consensus 775 -~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--------------~~~~ViVIaTTN~~d- 838 (1167)
..+..|.. .+.+|+||||+.+.+ .+++.|+.+|+... .+..+.||+|+|...
T Consensus 96 ~g~l~~A~~-~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~ 163 (262)
T TIGR02640 96 DNRLTLAVR-EGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEY 163 (262)
T ss_pred CchHHHHHH-cCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccc
Confidence 01112222 457999999998765 67778888886421 224678999999753
Q ss_pred ----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhh
Q 001066 839 ----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHT 872 (1167)
Q Consensus 839 ----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l 872 (1167)
.++.+|++ || ..+.++.|+.++..+|+..++
T Consensus 164 ~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 164 AGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56888988 98 789999999999999999875
No 146
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.25 E-value=4.6e-12 Score=144.52 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=51.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||++|++||+++ | ++||.+++++|+++|+||||++||++|.+.
T Consensus 150 gllL~GPPGcGKTllAraiA~el-g-~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A 203 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKM-G-IEPIVMSAGELESENAGEPGKLIRQRYREA 203 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHc-C-CCeEEEEHHHhhcCcCCcHHHHHHHHHHHH
Confidence 49999999999999999999999 5 999999999999999999999999999754
No 147
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.4e-10 Score=143.26 Aligned_cols=193 Identities=18% Similarity=0.225 Sum_probs=139.6
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------- 748 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------- 748 (1167)
.+|++|+|.+.+++.|...+.. + ..++.+|||||+|+|||++|+.+|..+....
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 4799999999999999998754 1 3345699999999999999999999875321
Q ss_pred ------CceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHH
Q 001066 749 ------KRIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLAL 818 (1167)
Q Consensus 749 ------~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~l 818 (1167)
..++++.+++... .....++.+...+.. ....|++|||+|.|.. ..++.|+..
T Consensus 82 ~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naLLK~ 144 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAFLKT 144 (614)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHHHHH
Confidence 1233444433211 112345555554433 2345999999999864 557788888
Q ss_pred hhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHH
Q 001066 819 MDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGAD 898 (1167)
Q Consensus 819 Ld~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aD 898 (1167)
|+... ...++|.+|+.+..|.+.|++ |+ ..+.|..++.++...+|...+...+..+++..+..|+..+.| +.++
T Consensus 145 LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~ 218 (614)
T PRK14971 145 LEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRD 218 (614)
T ss_pred HhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 88643 345666677677888899988 88 789999999999999999998888888888889999998876 4444
Q ss_pred HHHHHHHHHHHH
Q 001066 899 LQALCTQAAIIA 910 (1167)
Q Consensus 899 L~~Lv~~A~~~A 910 (1167)
+.+++.....++
T Consensus 219 al~~Lekl~~y~ 230 (614)
T PRK14971 219 ALSIFDQVVSFT 230 (614)
T ss_pred HHHHHHHHHHhc
Confidence 445445444443
No 148
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.5e-10 Score=142.65 Aligned_cols=193 Identities=15% Similarity=0.230 Sum_probs=134.9
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------- 749 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------- 749 (1167)
.+|++|+|++.+++.|+.++.. + ..+..+||+||+|+|||++|+.+|+.+.....
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 4799999999999999887754 1 34567999999999999999999999865210
Q ss_pred --------------ceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHH
Q 001066 750 --------------RIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSV 811 (1167)
Q Consensus 750 --------------~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~v 811 (1167)
..+|+.+++... .....++.+.+.+. ....-|+||||+|.|.. ..
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~a 143 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------AA 143 (620)
T ss_pred CccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------HH
Confidence 012222222110 01233444444332 23456999999998864 44
Q ss_pred HHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHc
Q 001066 812 VSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAART 891 (1167)
Q Consensus 812 l~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t 891 (1167)
++.|+..|+.... .+++|.+|+.+..|.+.|++ |. ..|.|..++.++....|...+...+..+++..+..|+..+
T Consensus 144 ~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s 218 (620)
T PRK14954 144 FNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKA 218 (620)
T ss_pred HHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 6678888886433 35555566667888888887 77 7999999999999999998888777778899999999998
Q ss_pred cCCcHHHHHHHHHHHHHHH
Q 001066 892 AGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 892 ~G~s~aDL~~Lv~~A~~~A 910 (1167)
.|... .+.+.+.....++
T Consensus 219 ~Gdlr-~al~eLeKL~~y~ 236 (620)
T PRK14954 219 QGSMR-DAQSILDQVIAFS 236 (620)
T ss_pred CCCHH-HHHHHHHHHHHhc
Confidence 87444 3334444444443
No 149
>PRK06620 hypothetical protein; Validated
Probab=99.22 E-value=8.5e-11 Score=127.70 Aligned_cols=145 Identities=10% Similarity=0.195 Sum_probs=103.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCccc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCR 800 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~ 800 (1167)
++++||||||+|||+|++++++..+ ..++. .... ....+ ....+|+|||||.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~~-- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQE-- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC-----CEEcc--hhhh-----------chhHH-----hcCCEEEEeccccchH--
Confidence 6799999999999999999987654 12211 0000 00111 1347999999995421
Q ss_pred CcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCc--CCcccCCCCCcc--cccccCCCCHHHHHHHHHHhhccCC
Q 001066 801 TRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEA--VDPALRRPGRFD--REIYFPLPSMEDRAAILSLHTERWP 876 (1167)
Q Consensus 801 ~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~--Ld~aLlrpgRF~--~~I~~~~P~~eER~eIL~~~l~~~~ 876 (1167)
..|+.+++.+...++.+||+++..|.. + ++|++ |+. ..+.+.+|+.+++..+++..+...+
T Consensus 100 ------------~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 100 ------------PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred ------------HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 245566666656777888888876664 4 77888 883 3689999999999999999988777
Q ss_pred CCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 877 KPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 877 ~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
..+++..++.|+.+..+ +.+.+..++...
T Consensus 165 l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 165 VTISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred CCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 88899999999999986 444555555543
No 150
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.21 E-value=2.1e-10 Score=132.12 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=105.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC----CceEEE----
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD----KRIAYF---- 754 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~----~~i~~~---- 754 (1167)
..|++|+|++.+++.|.-.+.. ....++||+|+||||||++|+++|..+.... ..+.+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 4799999999999988765432 1125799999999999999999999873200 000111
Q ss_pred --------------------Eecccccchhhhch--HHHHH---HHHHHHH--HhcCCcEEEEcCCCCcCcccCcccccc
Q 001066 755 --------------------ARKGADCLGKYVGD--AERQL---RLLFQVA--EKCQPSIIFFDEIDGLAPCRTRQQDQT 807 (1167)
Q Consensus 755 --------------------~l~~~~lls~~~g~--~e~~L---~~lF~~A--~~~~psILfIDEID~L~~~~~~~~~~~ 807 (1167)
.+.........+|. .+..+ ...|..- .....++||||||+.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~--------- 142 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED--------- 142 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH---------
Confidence 00000000001111 00010 0011100 112347999999999875
Q ss_pred hHHHHHHHHHHhhccc-----------CCCceEEEccCCCCC-cCCcccCCCCCcccccccCCCCH-HHHHHHHHHhh
Q 001066 808 HSSVVSTLLALMDGLK-----------SRGSVVVIGATNRPE-AVDPALRRPGRFDREIYFPLPSM-EDRAAILSLHT 872 (1167)
Q Consensus 808 ~~~vl~~LL~lLd~l~-----------~~~~ViVIaTTN~~d-~Ld~aLlrpgRF~~~I~~~~P~~-eER~eIL~~~l 872 (1167)
.++..|+..|+.-. ...++++|+|+|..+ .++++|+. ||...|.++.|.. ++|.+|+....
T Consensus 143 --~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 --HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 77888888886421 234689999998755 57888988 9999999988866 99999998753
No 151
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.20 E-value=9.5e-11 Score=147.38 Aligned_cols=200 Identities=21% Similarity=0.292 Sum_probs=130.2
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc----
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL---- 762 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll---- 762 (1167)
.|+|++++++.|...+....... .. .-.|..++||+||||||||++|+++|..++ .+|+.+++..+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cC-CCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhccccc
Confidence 47999999999999886521100 00 012334799999999999999999999986 355555554432
Q ss_pred -hhhhchHHH-----HHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc--cC-------CCc
Q 001066 763 -GKYVGDAER-----QLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL--KS-------RGS 827 (1167)
Q Consensus 763 -s~~~g~~e~-----~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l--~~-------~~~ 827 (1167)
..++|.... .-..+....+..+.+||||||||.+.+ .+++.|+.+|+.- .. ..+
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-----------~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-----------HHHHHHHHHHhcCeeecCCCceecCCC
Confidence 222221100 011222333455679999999999865 6888999999742 11 135
Q ss_pred eEEEccCCCC-------------------------CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc--------
Q 001066 828 VVVIGATNRP-------------------------EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER-------- 874 (1167)
Q Consensus 828 ViVIaTTN~~-------------------------d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~-------- 874 (1167)
++||+|||.- ..+.|.|+. |++.+|.|++++.++..+|+..++..
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~ 676 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQK 676 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 7889999832 114467776 99999999999999999999876542
Q ss_pred -CCCCCChhHHHHHHHHc--cCCcHHHHHHHHHHHHH
Q 001066 875 -WPKPVTGSLLKWIAART--AGFAGADLQALCTQAAI 908 (1167)
Q Consensus 875 -~~~~l~d~~L~~LA~~t--~G~s~aDL~~Lv~~A~~ 908 (1167)
....+++..+..|+... ..|-.+.|+.++.+-..
T Consensus 677 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~ 713 (758)
T PRK11034 677 GVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_pred CCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHH
Confidence 34445667777777543 22334555555554433
No 152
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.18 E-value=7.1e-10 Score=121.13 Aligned_cols=169 Identities=24% Similarity=0.331 Sum_probs=120.8
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
.+.+++|+|++.+++.|.+.....+. | .+.+++||+|++|||||++++++..++.... +.++.+...++
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L 91 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDL 91 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHh
Confidence 46899999999999999887655332 3 4678999999999999999999999887543 45555544433
Q ss_pred chhhhchHHHHHHHHHHHHH-hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc--cCCCceEEEccCCCCC
Q 001066 762 LGKYVGDAERQLRLLFQVAE-KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL--KSRGSVVVIGATNRPE 838 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~-~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l--~~~~~ViVIaTTN~~d 838 (1167)
. .+..++...+ ...+-|||+|++- +. ....-...|-.+|++- ....+|+|.||+|+-.
T Consensus 92 ~---------~l~~l~~~l~~~~~kFIlf~DDLs--Fe--------~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 92 G---------DLPELLDLLRDRPYKFILFCDDLS--FE--------EGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred c---------cHHHHHHHHhcCCCCEEEEecCCC--CC--------CCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 2 2344555544 3356899999965 21 1112335666677763 2355799999998743
Q ss_pred cCC---------------c--------ccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChh
Q 001066 839 AVD---------------P--------ALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGS 882 (1167)
Q Consensus 839 ~Ld---------------~--------aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~ 882 (1167)
.++ + +|.. ||...|.|.+|+.++-++|++.++..++..++..
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e 217 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEE 217 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 221 1 2333 9999999999999999999999999888777643
No 153
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.17 E-value=1.6e-10 Score=146.22 Aligned_cols=197 Identities=22% Similarity=0.312 Sum_probs=134.1
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCCC----CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLT----PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~----~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..|+|++.+++.+...+... +.|+. +..++||+||+|||||++|++||..++ ..++.++++.+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~ 520 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEY 520 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchh
Confidence 45789999999988887542 22222 233589999999999999999999986 34555554443
Q ss_pred ch-----h-------hhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc------
Q 001066 762 LG-----K-------YVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK------ 823 (1167)
Q Consensus 762 ls-----~-------~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~------ 823 (1167)
.. . |+|..+ ...+....+..+.+||||||||.+.+ .+++.|+.+|+.-.
T Consensus 521 ~~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~-----------~~~~~Ll~~ld~g~~~d~~g 587 (731)
T TIGR02639 521 MEKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHP-----------DIYNILLQVMDYATLTDNNG 587 (731)
T ss_pred hhcccHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCH-----------HHHHHHHHhhccCeeecCCC
Confidence 21 1 222211 12233444556779999999998865 67888999987531
Q ss_pred ---CCCceEEEccCCCCC-------------------------cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc-
Q 001066 824 ---SRGSVVVIGATNRPE-------------------------AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER- 874 (1167)
Q Consensus 824 ---~~~~ViVIaTTN~~d-------------------------~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~- 874 (1167)
...+.+||+|||... .+.|.|+. ||+.+|.|.+++.++..+|++..+..
T Consensus 588 ~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l 665 (731)
T TIGR02639 588 RKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDEL 665 (731)
T ss_pred cccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 123577888987631 13566666 99999999999999999999887653
Q ss_pred --------CCCCCChhHHHHHHHH--ccCCcHHHHHHHHHHHHHHH
Q 001066 875 --------WPKPVTGSLLKWIAAR--TAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 875 --------~~~~l~d~~L~~LA~~--t~G~s~aDL~~Lv~~A~~~A 910 (1167)
....+++..+..|+.. ...|-.+.|+.+++......
T Consensus 666 ~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~ 711 (731)
T TIGR02639 666 SKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKP 711 (731)
T ss_pred HHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHH
Confidence 1345677788888875 33455666766666554433
No 154
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.9e-11 Score=131.20 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=61.5
Q ss_pred chhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhh
Q 001066 1091 NCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLS 1162 (1167)
Q Consensus 1091 ~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~ 1162 (1167)
|.-+++-.|+-|+++ +|+||||||||||||||+|++- +..||+|-|||.++||.||-=.-||.+|-
T Consensus 177 ~~~ly~qigidpprg----vllygppg~gktml~kava~~t--~a~firvvgsefvqkylgegprmvrdvfr 242 (408)
T KOG0727|consen 177 HADLYKQIGIDPPRG----VLLYGPPGTGKTMLAKAVANHT--TAAFIRVVGSEFVQKYLGEGPRMVRDVFR 242 (408)
T ss_pred HHHHHHHhCCCCCcc----eEEeCCCCCcHHHHHHHHhhcc--chheeeeccHHHHHHHhccCcHHHHHHHH
Confidence 667788888888887 9999999999999999999988 58999999999999999999999999995
No 155
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.15 E-value=3.4e-10 Score=111.37 Aligned_cols=140 Identities=39% Similarity=0.637 Sum_probs=88.2
Q ss_pred ChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchH
Q 001066 690 GLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDA 769 (1167)
Q Consensus 690 Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~ 769 (1167)
|.+.+...+...+.. ....+++|+||||+|||++++.++..+.... ..++.++............
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~--~~v~~~~~~~~~~~~~~~~ 66 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPG--APFLYLNASDLLEGLVVAE 66 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCC--CCeEEEehhhhhhhhHHHH
Confidence 455666666665433 2456899999999999999999999885322 3455554444433222111
Q ss_pred HHH---HHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccC----CCceEEEccCCCCC--cC
Q 001066 770 ERQ---LRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKS----RGSVVVIGATNRPE--AV 840 (1167)
Q Consensus 770 e~~---L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~----~~~ViVIaTTN~~d--~L 840 (1167)
... ....+.......+.+|+|||++.+.. .....++..|..... ..++.+|++++... .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~ 135 (151)
T cd00009 67 LFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDL 135 (151)
T ss_pred HhhhhhHhHHHHhhccCCCeEEEEeChhhhhH-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCc
Confidence 111 12222334455789999999998732 333455555555432 36788888888776 56
Q ss_pred CcccCCCCCcccccccC
Q 001066 841 DPALRRPGRFDREIYFP 857 (1167)
Q Consensus 841 d~aLlrpgRF~~~I~~~ 857 (1167)
++.+.+ ||+..|.++
T Consensus 136 ~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 136 DRALYD--RLDIRIVIP 150 (151)
T ss_pred ChhHHh--hhccEeecC
Confidence 777776 887777765
No 156
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.14 E-value=4.7e-10 Score=129.61 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=109.4
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--CceEEE----
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD--KRIAYF---- 754 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~--~~i~~~---- 754 (1167)
+...|++|+|+++++..|.-.+..| ...+|||.|++|||||++|++++..+.... ...+|.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 3457999999999999998776553 235899999999999999999988775321 000111
Q ss_pred -----------------------------EecccccchhhhchHHHHHHHHHHHH---------HhcCCcEEEEcCCCCc
Q 001066 755 -----------------------------ARKGADCLGKYVGDAERQLRLLFQVA---------EKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 755 -----------------------------~l~~~~lls~~~g~~e~~L~~lF~~A---------~~~~psILfIDEID~L 796 (1167)
.+.........+|.. .+...|... .....++||||||+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 100000001111110 011112111 1224589999999999
Q ss_pred CcccCcccccchHHHHHHHHHHhhcc-----------cCCCceEEEccCCCCC-cCCcccCCCCCcccccccCCCC-HHH
Q 001066 797 APCRTRQQDQTHSSVVSTLLALMDGL-----------KSRGSVVVIGATNRPE-AVDPALRRPGRFDREIYFPLPS-MED 863 (1167)
Q Consensus 797 ~~~~~~~~~~~~~~vl~~LL~lLd~l-----------~~~~~ViVIaTTN~~d-~Ld~aLlrpgRF~~~I~~~~P~-~eE 863 (1167)
.+ .++..|+..|+.- ....++++|+|.|..+ .+.++|.. ||...+.+..|+ .++
T Consensus 157 ~~-----------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 157 DD-----------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPEL 223 (350)
T ss_pred CH-----------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHH
Confidence 86 6777888888641 1234688898888755 58889988 999999999997 599
Q ss_pred HHHHHHHhh
Q 001066 864 RAAILSLHT 872 (1167)
Q Consensus 864 R~eIL~~~l 872 (1167)
+.+|++...
T Consensus 224 e~~il~~~~ 232 (350)
T CHL00081 224 RVKIVEQRT 232 (350)
T ss_pred HHHHHHhhh
Confidence 999998753
No 157
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.13 E-value=1.7e-09 Score=121.56 Aligned_cols=113 Identities=24% Similarity=0.259 Sum_probs=82.7
Q ss_pred CcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC------------CCcCCcccCCCCCccc
Q 001066 785 PSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR------------PEAVDPALRRPGRFDR 852 (1167)
Q Consensus 785 psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~------------~d~Ld~aLlrpgRF~~ 852 (1167)
|.||||||+|.|-- ...+.|...|+.-.. -+||.+||+ |.-++..|+. |+ .
T Consensus 292 pGVLFIDEvHmLDI-----------E~FsFlnrAlEse~a---PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-l 354 (450)
T COG1224 292 PGVLFIDEVHMLDI-----------ECFSFLNRALESELA---PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-L 354 (450)
T ss_pred cceEEEechhhhhH-----------HHHHHHHHHhhcccC---cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-e
Confidence 78888888887753 333444444543211 255556664 4556777877 77 7
Q ss_pred ccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 001066 853 EIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 853 ~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
+|...+++.++..+|++..+......+++..++.|+.....-+-+--.+|+.-|...|.+|+
T Consensus 355 II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg 416 (450)
T COG1224 355 IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG 416 (450)
T ss_pred EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC
Confidence 88889999999999999999988888999999999998776665655677777777777764
No 158
>PRK09087 hypothetical protein; Validated
Probab=99.12 E-value=6.7e-10 Score=121.69 Aligned_cols=154 Identities=15% Similarity=0.180 Sum_probs=106.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCccc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCR 800 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~ 800 (1167)
+.++|+||+|+|||+|+++++...+ ..|+.. ..+... ++.... ..+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~--~~~~~~-----------~~~~~~---~~~l~iDDi~~~~~-- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP--NEIGSD-----------AANAAA---EGPVLIEDIDAGGF-- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH--HHcchH-----------HHHhhh---cCeEEEECCCCCCC--
Confidence 4599999999999999999987653 233322 111111 111111 15799999997632
Q ss_pred CcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC---CcccCCCCCcc--cccccCCCCHHHHHHHHHHhhccC
Q 001066 801 TRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV---DPALRRPGRFD--REIYFPLPSMEDRAAILSLHTERW 875 (1167)
Q Consensus 801 ~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L---d~aLlrpgRF~--~~I~~~~P~~eER~eIL~~~l~~~ 875 (1167)
. ...|+.+++.+...++.+||+++..|..+ .+.|++ ||. ..+.+..|+.++|.+||+.++...
T Consensus 102 ----~------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 102 ----D------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred ----C------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 0 13467777766666777887777665533 577887 774 778999999999999999999988
Q ss_pred CCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 876 PKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 876 ~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
+..+++..+..|+.+..+ +.+.+..++.+...++
T Consensus 170 ~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~ 203 (226)
T PRK09087 170 QLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLA 203 (226)
T ss_pred CCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 888999999999999885 3344444444444444
No 159
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.11 E-value=4.2e-10 Score=128.33 Aligned_cols=142 Identities=18% Similarity=0.230 Sum_probs=95.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe-cccccchhhhc---hHH---HHHHHHHHHHHhcCCcEEEEc
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR-KGADCLGKYVG---DAE---RQLRLLFQVAEKCQPSIIFFD 791 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l-~~~~lls~~~g---~~e---~~L~~lF~~A~~~~psILfID 791 (1167)
..++|||.||||||||++|+.||..++.....+.+... ...++++...- ... ......+..|.. .+.+||+|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 35689999999999999999999999844333332211 22223332210 000 001223334443 56889999
Q ss_pred CCCCcCcccCcccccchHHHHHHHHHHhhc------------ccCCCceEEEccCCCCC------------cCCcccCCC
Q 001066 792 EIDGLAPCRTRQQDQTHSSVVSTLLALMDG------------LKSRGSVVVIGATNRPE------------AVDPALRRP 847 (1167)
Q Consensus 792 EID~L~~~~~~~~~~~~~~vl~~LL~lLd~------------l~~~~~ViVIaTTN~~d------------~Ld~aLlrp 847 (1167)
||+.+.+ .++..|..+|+. +...+.++||||+|..+ .++.+++.
T Consensus 142 Ein~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 9998865 555666666652 22445799999999854 36888988
Q ss_pred CCcccccccCCCCHHHHHHHHHHhhcc
Q 001066 848 GRFDREIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 848 gRF~~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
||...+.+..|+.++-.+||......
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99778899999999999999876543
No 160
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=7.7e-11 Score=126.41 Aligned_cols=62 Identities=26% Similarity=0.406 Sum_probs=54.7
Q ss_pred hhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1096 QNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1096 ~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
...|+.-+++ +|||||||||||+||+|+||+- ...||+|.+|||+||||||--.-||.+|-.
T Consensus 174 ~aLGIaQPKG----vlLygppgtGktLlaraVahht--~c~firvsgselvqk~igegsrmvrelfvm 235 (404)
T KOG0728|consen 174 EALGIAQPKG----VLLYGPPGTGKTLLARAVAHHT--DCTFIRVSGSELVQKYIGEGSRMVRELFVM 235 (404)
T ss_pred HhcCCCCCcc----eEEecCCCCchhHHHHHHHhhc--ceEEEEechHHHHHHHhhhhHHHHHHHHHH
Confidence 3345554555 9999999999999999999988 389999999999999999999999999964
No 161
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=7.2e-11 Score=129.43 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=51.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
+|||||||||||++||||+|++- +-+||+|--|.|++||.||||+=|+++|+..
T Consensus 168 giLLyGPPGTGKSYLAKAVATEA--nSTFFSvSSSDLvSKWmGESEkLVknLFemA 221 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEA--NSTFFSVSSSDLVSKWMGESEKLVKNLFEMA 221 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhc--CCceEEeehHHHHHHHhccHHHHHHHHHHHH
Confidence 69999999999999999999988 5899999999999999999999999999853
No 162
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.09 E-value=1.7e-09 Score=124.87 Aligned_cols=163 Identities=25% Similarity=0.334 Sum_probs=104.1
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC-------CC---ceEE
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG-------DK---RIAY 753 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~-------~~---~i~~ 753 (1167)
-|..|+|+++++..|.-.+..| ...++||.|+||+|||+++++++..+... .. .-++
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 3778999999999886665442 23579999999999999999999877210 00 0000
Q ss_pred EE-ecc-------------------cccc-----hhhhchH--HHHHH---HHHH--HHHhcCCcEEEEcCCCCcCcccC
Q 001066 754 FA-RKG-------------------ADCL-----GKYVGDA--ERQLR---LLFQ--VAEKCQPSIIFFDEIDGLAPCRT 801 (1167)
Q Consensus 754 ~~-l~~-------------------~~ll-----s~~~g~~--e~~L~---~lF~--~A~~~~psILfIDEID~L~~~~~ 801 (1167)
+. .++ .++- ..++|.. ...+. ..|. ........+||||||+.+..
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 00 000 0000 0122221 11100 0011 01123458999999999865
Q ss_pred cccccchHHHHHHHHHHhhcc-----------cCCCceEEEccCCCCC-cCCcccCCCCCcccccccCCCCH-HHHHHHH
Q 001066 802 RQQDQTHSSVVSTLLALMDGL-----------KSRGSVVVIGATNRPE-AVDPALRRPGRFDREIYFPLPSM-EDRAAIL 868 (1167)
Q Consensus 802 ~~~~~~~~~vl~~LL~lLd~l-----------~~~~~ViVIaTTN~~d-~Ld~aLlrpgRF~~~I~~~~P~~-eER~eIL 868 (1167)
.++..|+..|+.- ....++++|+|+|..+ .++++|+. ||...+.++.|.. ++|.+|+
T Consensus 146 --------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 146 --------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred --------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 6778888888542 1224688998888655 68889998 9999999998875 8899999
Q ss_pred HHhh
Q 001066 869 SLHT 872 (1167)
Q Consensus 869 ~~~l 872 (1167)
+...
T Consensus 216 ~~~~ 219 (337)
T TIGR02030 216 ERRT 219 (337)
T ss_pred Hhhh
Confidence 8743
No 163
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=2.5e-09 Score=124.36 Aligned_cols=188 Identities=14% Similarity=0.165 Sum_probs=125.0
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC---ceEEEEe--
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK---RIAYFAR-- 756 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~---~i~~~~l-- 756 (1167)
...++.|+|.+++.+.|..++.. + ..+..+||+||+|+|||++|+.+|+.+..... ....+..
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 35789999999999999998865 2 34567999999999999999999999865210 0000000
Q ss_pred -cc-----------cccc--h--------hh-hchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchH
Q 001066 757 -KG-----------ADCL--G--------KY-VGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHS 809 (1167)
Q Consensus 757 -~~-----------~~ll--s--------~~-~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~ 809 (1167)
.+ ++++ . +. ..-....++.+..... .....||||||+|.|..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 00 0110 0 00 0000122333333222 23457999999999865
Q ss_pred HHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 001066 810 SVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAA 889 (1167)
Q Consensus 810 ~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~ 889 (1167)
...+.|+..|+.... +.++|..|+.+..+.+.+++ |+ ..+.|++|+.++..++|........ +++..+..++.
T Consensus 156 ~aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~ 228 (351)
T PRK09112 156 NAANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQ 228 (351)
T ss_pred HHHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHH
Confidence 556778888887433 44555556778888899988 98 7999999999999999987543222 45667788888
Q ss_pred HccCCcHHHH
Q 001066 890 RTAGFAGADL 899 (1167)
Q Consensus 890 ~t~G~s~aDL 899 (1167)
.+.|.....+
T Consensus 229 ~s~G~pr~Al 238 (351)
T PRK09112 229 RSKGSVRKAL 238 (351)
T ss_pred HcCCCHHHHH
Confidence 8877555444
No 164
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.6e-11 Score=132.44 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=63.5
Q ss_pred chhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1091 NCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1091 ~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
|.-.+.++|+.|+++ ++|||+||||||+||||+|+.-+ .+|+++=+|+|+|||.|+-=+=||+||+-
T Consensus 207 hPE~YeemGikpPKG----VIlyG~PGTGKTLLAKAVANqTS--ATFlRvvGseLiQkylGdGpklvRqlF~v 273 (440)
T KOG0726|consen 207 HPEYYEEMGIKPPKG----VILYGEPGTGKTLLAKAVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRV 273 (440)
T ss_pred CHHHHHHcCCCCCCe----eEEeCCCCCchhHHHHHHhcccc--hhhhhhhhHHHHHHHhccchHHHHHHHHH
Confidence 777888999999998 99999999999999999999995 89999999999999999999999999984
No 165
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.08 E-value=1.2e-09 Score=115.76 Aligned_cols=147 Identities=19% Similarity=0.263 Sum_probs=102.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcC---------------------CCceEEEEecccccchhhhchHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARG---------------------DKRIAYFARKGADCLGKYVGDAERQLRLLF 777 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~---------------------~~~i~~~~l~~~~lls~~~g~~e~~L~~lF 777 (1167)
.+..+||+||+|+|||++|+.++..+... ...+.++...... .....++.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~-------~~~~~i~~i~ 85 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQS-------IKVDQVRELV 85 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCc-------CCHHHHHHHH
Confidence 44679999999999999999999997542 1112222221111 1123444445
Q ss_pred HHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccc
Q 001066 778 QVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDRE 853 (1167)
Q Consensus 778 ~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~ 853 (1167)
..+.. ....||||||+|.+.. ..++.|+..|+... ...++|.+|+.+..+.+++++ |+ ..
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~-~~ 149 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMNE-----------AAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RC-QV 149 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhCH-----------HHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hc-EE
Confidence 54433 3457999999998864 45667888888743 344555566677889999998 88 68
Q ss_pred cccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCC
Q 001066 854 IYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGF 894 (1167)
Q Consensus 854 I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~ 894 (1167)
+.|++|+.++..++|... + +++..+..|+..+.|.
T Consensus 150 ~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 150 LPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred eeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 999999999999999876 2 4667788888877663
No 166
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=2.8e-09 Score=124.44 Aligned_cols=186 Identities=14% Similarity=0.141 Sum_probs=123.4
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC---c--------
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK---R-------- 750 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~---~-------- 750 (1167)
..++++|+|.+.+++.|...+.. + ..+..+||+||+|+||+++|.++|+.+-.... .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45799999999999999998765 2 34567999999999999999999998853221 0
Q ss_pred ------------------eEEEEecc--cccchhhhch-HHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccc
Q 001066 751 ------------------IAYFARKG--ADCLGKYVGD-AERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQD 805 (1167)
Q Consensus 751 ------------------i~~~~l~~--~~lls~~~g~-~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~ 805 (1167)
-.++.+.. .+--.+.... .-..++.+...+. ...+.||+|||+|.+..
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------- 155 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------- 155 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------
Confidence 00111100 0000000000 1123444443332 34678999999998864
Q ss_pred cchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHH
Q 001066 806 QTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLK 885 (1167)
Q Consensus 806 ~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~ 885 (1167)
...+.|+..|+.. ....++|.+|+.++.+.+.+++ |+ +.|.|++|+.++..++|...... ..+..+.
T Consensus 156 ----~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~----~~~~~~~ 222 (365)
T PRK07471 156 ----NAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD----LPDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc----CCHHHHH
Confidence 6677888888854 3445666688888888888888 88 89999999999999999875421 2333345
Q ss_pred HHHHHccCCcHHHH
Q 001066 886 WIAARTAGFAGADL 899 (1167)
Q Consensus 886 ~LA~~t~G~s~aDL 899 (1167)
.++..+.|.....+
T Consensus 223 ~l~~~s~Gsp~~Al 236 (365)
T PRK07471 223 ALAALAEGSVGRAL 236 (365)
T ss_pred HHHHHcCCCHHHHH
Confidence 67777776444433
No 167
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=2.3e-09 Score=122.87 Aligned_cols=179 Identities=14% Similarity=0.204 Sum_probs=121.4
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC---CceEEEEecccc
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD---KRIAYFARKGAD 760 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~---~~i~~~~l~~~~ 760 (1167)
+|++|+|++.+++.+...+.. + ..++.+||+||+|+|||++|+++|..+.... ....++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------N-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------C-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 588999999999999888754 1 3456789999999999999999999874321 111222222110
Q ss_pred cchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 761 CLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
+... .-..++.+...+. .....|++||++|.+.. ...+.|+..|+..+ .++++|.+|+.
T Consensus 70 --~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LEepp--~~t~~il~~~~ 132 (313)
T PRK05564 70 --KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIEEPP--KGVFIILLCEN 132 (313)
T ss_pred --CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCC--CCeEEEEEeCC
Confidence 1111 1123444444332 23456999999998864 56778898888643 44555556677
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHH
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGAD 898 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aD 898 (1167)
++.+.+.+++ |+ +.+.|+.|+.++...+|...+. .++...+..++..+.|..+..
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHH
Confidence 8899999998 88 7999999999999888876543 234556667777776644433
No 168
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.06 E-value=1.1e-09 Score=116.94 Aligned_cols=189 Identities=17% Similarity=0.192 Sum_probs=133.2
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG 763 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls 763 (1167)
.+.||+|.++.+.++.-+... ....+++|.||||+||||-+.++|+++-.....-.++.+++++--+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG 91 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG 91 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc
Confidence 578999999999999877644 2235799999999999999999999875433333344555544322
Q ss_pred hhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCc
Q 001066 764 KYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEA 839 (1167)
Q Consensus 764 ~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~ 839 (1167)
- .-....++ .|..-+- ..-.||+|||.|.+.. ..+++|.+.|+-.....++.+ ++|..+.
T Consensus 92 I--DvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSMT~-----------gAQQAlRRtMEiyS~ttRFal--aCN~s~K 155 (333)
T KOG0991|consen 92 I--DVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSMTA-----------GAQQALRRTMEIYSNTTRFAL--ACNQSEK 155 (333)
T ss_pred c--HHHHHHHH-HHHHhhccCCCCceeEEEeeccchhhh-----------HHHHHHHHHHHHHcccchhhh--hhcchhh
Confidence 1 11122222 2332221 2235999999998874 566778888886655555444 7777777
Q ss_pred CCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHH
Q 001066 840 VDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCT 904 (1167)
Q Consensus 840 Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~ 904 (1167)
+-..+.+ |+ ..+.|...+..+.+.-|..........+++.-|+.+.-...|.....|.+|-.
T Consensus 156 IiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQs 217 (333)
T KOG0991|consen 156 IIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQS 217 (333)
T ss_pred hhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHH
Confidence 7677777 77 67788888888888777777777778888888999988888877777766643
No 169
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=8e-11 Score=133.33 Aligned_cols=52 Identities=21% Similarity=0.428 Sum_probs=50.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLS 1162 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~ 1162 (1167)
||||||||||||||||||+|++. | .+|++|.|++|.+|+-||+||.|+-+|.
T Consensus 129 GiLL~GPpG~GKTmlAKA~Akea-g-a~fInv~~s~lt~KWfgE~eKlv~AvFs 180 (386)
T KOG0737|consen 129 GILLYGPPGTGKTMLAKAIAKEA-G-ANFINVSVSNLTSKWFGEAQKLVKAVFS 180 (386)
T ss_pred cceecCCCCchHHHHHHHHHHHc-C-CCcceeeccccchhhHHHHHHHHHHHHh
Confidence 49999999999999999999999 5 8999999999999999999999999996
No 170
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.05 E-value=2e-09 Score=137.81 Aligned_cols=201 Identities=22% Similarity=0.264 Sum_probs=133.6
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccC-CCCCC-cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLG-LTPPR-GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG 763 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lg-l~~~~-~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls 763 (1167)
..|+|++.++..+.+.+..... .+. -..|. .+||+||||||||.+|++||..+.... -.++.++++.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~------gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~--~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARA------GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE--QNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhc------CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC--cceEEEeHHHhhh
Confidence 4689999999999988865311 011 01233 489999999999999999999986432 2445555444321
Q ss_pred ------------hhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--------
Q 001066 764 ------------KYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-------- 823 (1167)
Q Consensus 764 ------------~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-------- 823 (1167)
.|+|..+.. .+....+..+++||+||||+.+.+ .+++.|+++|+.-.
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~~-----------~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAHP-----------DVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred hhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcCH-----------HHHHHHHHHhhcceeecCCCcE
Confidence 133332211 123344557889999999997664 77788888887532
Q ss_pred -CCCceEEEccCCCCC-----------------------------cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhc
Q 001066 824 -SRGSVVVIGATNRPE-----------------------------AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTE 873 (1167)
Q Consensus 824 -~~~~ViVIaTTN~~d-----------------------------~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~ 873 (1167)
...+.+||.|||... .+.|+|++ |++ .|.|.+++.++..+|+...+.
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 124578888987521 13466666 885 889999999999999977654
Q ss_pred c----------CCCCCChhHHHHHHHHccC--CcHHHHHHHHHHHHHHH
Q 001066 874 R----------WPKPVTGSLLKWIAARTAG--FAGADLQALCTQAAIIA 910 (1167)
Q Consensus 874 ~----------~~~~l~d~~L~~LA~~t~G--~s~aDL~~Lv~~A~~~A 910 (1167)
. +...+++..+..|+....+ |-.+.|..+++.-...+
T Consensus 782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~ 830 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPE 830 (852)
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHH
Confidence 3 2234677888888887643 45677777766554443
No 171
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=2.8e-10 Score=134.53 Aligned_cols=199 Identities=21% Similarity=0.290 Sum_probs=137.9
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..+|++|+|-...+.++.+.+.. ......+|||.|.+||||..+|++|.+...+.. -+|+.++|+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~--~PFIaiNCaAi 307 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRAN--GPFIAINCAAI 307 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccC--CCeEEEecccC
Confidence 35799999999998888887654 235667899999999999999999998776543 58899999876
Q ss_pred chh-----hhch--------HHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-----
Q 001066 762 LGK-----YVGD--------AERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK----- 823 (1167)
Q Consensus 762 ls~-----~~g~--------~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~----- 823 (1167)
-.. .+|. ....-..+|+.|.. +.||||||..|.. .++..||+.|+...
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl-----------~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPL-----------PLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCH-----------HHHHHHHHHHhhceEEecC
Confidence 422 2222 11113445666644 7999999998875 77888999887531
Q ss_pred ----CCCceEEEccCCCCCcCCcccCCCCCcc-------cccccCCCCHHHHHHHHHH--------hhccCCC---CCCh
Q 001066 824 ----SRGSVVVIGATNRPEAVDPALRRPGRFD-------REIYFPLPSMEDRAAILSL--------HTERWPK---PVTG 881 (1167)
Q Consensus 824 ----~~~~ViVIaTTN~~d~Ld~aLlrpgRF~-------~~I~~~~P~~eER~eIL~~--------~l~~~~~---~l~d 881 (1167)
..-.|.||||||.. |-.++. .|+|. .++.+..|...+|.+-+.. +...++. .+++
T Consensus 374 ~t~~~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~ 450 (560)
T COG3829 374 GTKPIPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSP 450 (560)
T ss_pred CCCceeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCH
Confidence 12359999999974 222222 34443 3455567888777663332 2222322 2567
Q ss_pred hHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 882 SLLKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 882 ~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
..+..|.++-.--+-++|++++.++...+
T Consensus 451 ~a~~~L~~y~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 451 DALALLLRYDWPGNVRELENVIERAVNLV 479 (560)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 78888888877778899999999887643
No 172
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.9e-10 Score=124.25 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=61.5
Q ss_pred chhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1091 NCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1091 ~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
|.-.+-+.|+-|+++ +|+|||||||||++|+|+|+.- ...||+|=+|||+|||+||--.-||.+|+..
T Consensus 199 ~perfv~lgidppkg----vllygppgtgktl~aravanrt--dacfirvigselvqkyvgegarmvrelf~ma 266 (435)
T KOG0729|consen 199 HPERFVNLGIDPPKG----VLLYGPPGTGKTLCARAVANRT--DACFIRVIGSELVQKYVGEGARMVRELFEMA 266 (435)
T ss_pred CHHHHhhcCCCCCCc----eEEeCCCCCchhHHHHHHhccc--CceEEeehhHHHHHHHhhhhHHHHHHHHHHh
Confidence 455666678888888 9999999999999999999988 4899999999999999999999999999864
No 173
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.04 E-value=3.3e-09 Score=136.48 Aligned_cols=201 Identities=22% Similarity=0.312 Sum_probs=137.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCC----CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGL----TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl----~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..|+|++.+++.+...+.... .|+ .+...+||+||+|||||++|++||..+.... .+++.++++.+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~--~~~i~~d~s~~ 634 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE--DAMVRIDMSEY 634 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhh
Confidence 468999999999999886521 122 2335689999999999999999999875432 34555555443
Q ss_pred ch-----h-------hhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc------
Q 001066 762 LG-----K-------YVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK------ 823 (1167)
Q Consensus 762 ls-----~-------~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~------ 823 (1167)
.. . |+|..+ ...+....+..+.+|||||||+.+.+ .+++.|+++|+.-.
T Consensus 635 ~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~~-----------~v~~~Ll~~l~~g~l~d~~g 701 (852)
T TIGR03346 635 MEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAHP-----------DVFNVLLQVLDDGRLTDGQG 701 (852)
T ss_pred cccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCCH-----------HHHHHHHHHHhcCceecCCC
Confidence 22 1 122111 11233344455668999999998865 78888999886521
Q ss_pred ---CCCceEEEccCCCCCc-------------------------CCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc-
Q 001066 824 ---SRGSVVVIGATNRPEA-------------------------VDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER- 874 (1167)
Q Consensus 824 ---~~~~ViVIaTTN~~d~-------------------------Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~- 874 (1167)
...+.+||+|||.... +.|.|.. ||+.++.|.+++.++..+|+...+..
T Consensus 702 ~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l 779 (852)
T TIGR03346 702 RTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRL 779 (852)
T ss_pred eEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHH
Confidence 1235778899987221 2355665 89999999999999999999876542
Q ss_pred --------CCCCCChhHHHHHHHHcc--CCcHHHHHHHHHHHHHHHH
Q 001066 875 --------WPKPVTGSLLKWIAARTA--GFAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 875 --------~~~~l~d~~L~~LA~~t~--G~s~aDL~~Lv~~A~~~A~ 911 (1167)
....+++..+..|+.+.. .+..+.|+.++++.....+
T Consensus 780 ~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l 826 (852)
T TIGR03346 780 RKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPL 826 (852)
T ss_pred HHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHH
Confidence 134567888888888743 5777888888877765544
No 174
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.7e-10 Score=124.34 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=60.5
Q ss_pred chhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhh
Q 001066 1091 NCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLS 1162 (1167)
Q Consensus 1091 ~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~ 1162 (1167)
|.-.|.+.++.|+++ +|+|||||||||+||+|-|..- |-+|+++-+|+|+|||||+--+=||.-|+
T Consensus 193 h~ekF~~lgi~pPKG----vLmYGPPGTGKTlmARAcAaqT--~aTFLKLAgPQLVQMfIGdGAkLVRDAFa 258 (424)
T KOG0652|consen 193 HKEKFENLGIRPPKG----VLMYGPPGTGKTLMARACAAQT--NATFLKLAGPQLVQMFIGDGAKLVRDAFA 258 (424)
T ss_pred cHHHHHhcCCCCCCc----eEeeCCCCCcHHHHHHHHHHhc--cchHHHhcchHHHhhhhcchHHHHHHHHH
Confidence 555667778888887 9999999999999999999988 69999999999999999999999999997
No 175
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.00 E-value=5.4e-09 Score=134.20 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=129.3
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCC----CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLT----PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~----~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
...|+|.+.+++.|...+.... .|+. +...+||+||+|||||++|++||..+.... ..++.+++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~--~~~i~id~se 636 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD--DAMVRIDMSE 636 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC--CcEEEEEhHH
Confidence 3568899999999988886521 1211 223689999999999999999999875332 2455555554
Q ss_pred cchh-----hh-------chHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc--c---
Q 001066 761 CLGK-----YV-------GDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL--K--- 823 (1167)
Q Consensus 761 lls~-----~~-------g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l--~--- 823 (1167)
+... .+ |..+. ..+....+..+.+|||||||+.+.+ .+++.|+.+|+.- .
T Consensus 637 ~~~~~~~~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEieka~~-----------~v~~~Ll~ile~g~l~d~~ 703 (857)
T PRK10865 637 FMEKHSVSRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEKAHP-----------DVFNILLQVLDDGRLTDGQ 703 (857)
T ss_pred hhhhhhHHHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhhCCH-----------HHHHHHHHHHhhCceecCC
Confidence 4321 11 11111 1122223344559999999998765 6788888888642 1
Q ss_pred ----CCCceEEEccCCCCC-------------------------cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc
Q 001066 824 ----SRGSVVVIGATNRPE-------------------------AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 824 ----~~~~ViVIaTTN~~d-------------------------~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
...+.+||+|||... .+.|+|+. |++..+.|.+++.++...|++.++..
T Consensus 704 gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 704 GRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred ceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 123456888988621 13467776 89999999999999999998876643
Q ss_pred ---------CCCCCChhHHHHHHHHc--cCCcHHHHHHHHHHHHH
Q 001066 875 ---------WPKPVTGSLLKWIAART--AGFAGADLQALCTQAAI 908 (1167)
Q Consensus 875 ---------~~~~l~d~~L~~LA~~t--~G~s~aDL~~Lv~~A~~ 908 (1167)
+...+++..+..|+.+. ..|-.+.|+.+++.-..
T Consensus 782 l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~ 826 (857)
T PRK10865 782 LYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIE 826 (857)
T ss_pred HHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHH
Confidence 23446777788887643 22345666666655444
No 176
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.00 E-value=4e-09 Score=135.28 Aligned_cols=198 Identities=20% Similarity=0.290 Sum_probs=130.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCC----CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGL----TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl----~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..|+|++.+++.|...+... ..|+ .|..++||+||+|||||++|++||..+.... ..++.++...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~--~~~~~~d~s~~ 578 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE--DAMIRLDMSEY 578 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc--cceEEEEchhc
Confidence 45799999999998887542 1122 1223589999999999999999999875322 34555555443
Q ss_pred ch-----h-------hhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc------
Q 001066 762 LG-----K-------YVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK------ 823 (1167)
Q Consensus 762 ls-----~-------~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~------ 823 (1167)
.. . |+|..+ ...+....+..+.+||||||||.+.+ .+++.|+..|+.-.
T Consensus 579 ~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~-----------~v~~~Llq~le~g~~~d~~g 645 (821)
T CHL00095 579 MEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHP-----------DIFNLLLQILDDGRLTDSKG 645 (821)
T ss_pred cccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCH-----------HHHHHHHHHhccCceecCCC
Confidence 21 1 222211 12344555566679999999998865 78888999988521
Q ss_pred ---CCCceEEEccCCCCCc-------------------------------------CCcccCCCCCcccccccCCCCHHH
Q 001066 824 ---SRGSVVVIGATNRPEA-------------------------------------VDPALRRPGRFDREIYFPLPSMED 863 (1167)
Q Consensus 824 ---~~~~ViVIaTTN~~d~-------------------------------------Ld~aLlrpgRF~~~I~~~~P~~eE 863 (1167)
...+.+||+|||.... +.|.|+. |++.+|.|.+.+.++
T Consensus 646 ~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~ 723 (821)
T CHL00095 646 RTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKND 723 (821)
T ss_pred cEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHH
Confidence 1346888889875311 1245666 888999999999999
Q ss_pred HHHHHHHhhccC---------CCCCChhHHHHHHHHc--cCCcHHHHHHHHHHHHH
Q 001066 864 RAAILSLHTERW---------PKPVTGSLLKWIAART--AGFAGADLQALCTQAAI 908 (1167)
Q Consensus 864 R~eIL~~~l~~~---------~~~l~d~~L~~LA~~t--~G~s~aDL~~Lv~~A~~ 908 (1167)
..+|+...+..+ .+.+++..+..|+... ..|-.+.|+.++++-..
T Consensus 724 l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~ 779 (821)
T CHL00095 724 VWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLE 779 (821)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Confidence 999988766532 2345666777777752 23445556555554433
No 177
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.99 E-value=1.5e-08 Score=122.34 Aligned_cols=205 Identities=21% Similarity=0.224 Sum_probs=135.4
Q ss_pred cCcccccChHHHHHHHHHHHHcccc--C---------------hhhh----hccCCCCCCcEEEEcCCCCcHHHHHHHHH
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLL--Y---------------PEFF----DNLGLTPPRGVLLHGHPGTGKTLVVRALI 741 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~--~---------------~e~~----~~lgl~~~~~VLL~GPpGTGKTtLAraLA 741 (1167)
..|.+|.|-+.+-+.+..+|.+.-. + .+++ ...+.++.+-+||+||||.||||||+.||
T Consensus 268 k~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViA 347 (877)
T KOG1969|consen 268 KKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIA 347 (877)
T ss_pred hHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHH
Confidence 3588999999999888887743210 0 0111 11234555678999999999999999999
Q ss_pred HHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHH
Q 001066 742 GSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLA 817 (1167)
Q Consensus 742 ~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~ 817 (1167)
+++| +.++.+++++--+ ......++..+...-. ..+|..|+|||||.-.. ..+..|+.
T Consensus 348 kqaG-----YsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~-----------~~Vdvils 409 (877)
T KOG1969|consen 348 KQAG-----YSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR-----------AAVDVILS 409 (877)
T ss_pred HhcC-----ceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH-----------HHHHHHHH
Confidence 9998 6788888876432 2223344443333211 25799999999995542 44555665
Q ss_pred Hhhc--c----cCC----------C---ceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCC
Q 001066 818 LMDG--L----KSR----------G---SVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKP 878 (1167)
Q Consensus 818 lLd~--l----~~~----------~---~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~ 878 (1167)
++.. . ... . ..-||+.+|... -|+|+-.--|.+.|+|++|...-..+-|+.++...+..
T Consensus 410 lv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr 487 (877)
T KOG1969|consen 410 LVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR 487 (877)
T ss_pred HHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC
Confidence 5542 0 000 0 134677777643 35554322477899999999999999999999988888
Q ss_pred CChhHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 001066 879 VTGSLLKWIAARTAGFAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 879 l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~ 911 (1167)
.+...|..|++.+.+ ||+..++.....+.
T Consensus 488 ~d~~aL~~L~el~~~----DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 488 ADSKALNALCELTQN----DIRSCINTLQFLAS 516 (877)
T ss_pred CCHHHHHHHHHHhcc----hHHHHHHHHHHHHH
Confidence 888888888887765 55555554444443
No 178
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.99 E-value=2.6e-09 Score=131.06 Aligned_cols=198 Identities=20% Similarity=0.286 Sum_probs=127.2
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..|+.|+|....++.+.+.+... .....+|||+|++|||||++|++|+....+. .-+|+.++|..+.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~~~ 259 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAALS 259 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCCCC
Confidence 46888999999999888877552 1345689999999999999999999876532 3478888887653
Q ss_pred hhh-----hchHHHHH-------HHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--C----
Q 001066 763 GKY-----VGDAERQL-------RLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--S---- 824 (1167)
Q Consensus 763 s~~-----~g~~e~~L-------~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~---- 824 (1167)
... +|.....+ ...|.. ...++||||||+.|.. .++..|+..|+.-. .
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISP-----------AFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCH-----------HHHHHHHHHHhcCcEEECCCC
Confidence 221 11100000 011222 2468999999999976 67778888886421 1
Q ss_pred ---CCceEEEccCCCCC-c------CCcccCCCCCcccccccCCCCHHHH----HHHHHHhhcc----C--CCCCChhHH
Q 001066 825 ---RGSVVVIGATNRPE-A------VDPALRRPGRFDREIYFPLPSMEDR----AAILSLHTER----W--PKPVTGSLL 884 (1167)
Q Consensus 825 ---~~~ViVIaTTN~~d-~------Ld~aLlrpgRF~~~I~~~~P~~eER----~eIL~~~l~~----~--~~~l~d~~L 884 (1167)
...+.||+||+..- . +.+.|.. |+ ..+.+..|...+| ..|++.++.. + ...+++..+
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl-~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RI-NVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hh-cCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 12478888887531 1 1122222 33 2334445555544 3344444432 2 245788889
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 885 KWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 885 ~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
..|..+...-+.++|++++.+|+..+
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 99999887788999999999887654
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.3e-09 Score=131.52 Aligned_cols=196 Identities=23% Similarity=0.330 Sum_probs=136.3
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCC----CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGL----TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl----~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..|+|+++++..+...|... +.|+ .|..++||.||+|+|||-||++||..+.... ..++.++++++
T Consensus 491 ~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy 560 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEY 560 (786)
T ss_pred cceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHH
Confidence 46899999999999988652 2333 2334788999999999999999999987433 46677777776
Q ss_pred chh------------hhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc------
Q 001066 762 LGK------------YVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK------ 823 (1167)
Q Consensus 762 ls~------------~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~------ 823 (1167)
+.+ |+|.-+. ..+-+..++.+.+||+||||+...+ .+++.||+.|+.-.
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAHp-----------dV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAHP-----------DVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcCH-----------HHHHHHHHHhcCCeeecCCC
Confidence 532 3333221 2233344556779999999998776 89999999998621
Q ss_pred ---CCCceEEEccCCCCC----------------------------cCCcccCCCCCcccccccCCCCHHHHHHHHHHhh
Q 001066 824 ---SRGSVVVIGATNRPE----------------------------AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHT 872 (1167)
Q Consensus 824 ---~~~~ViVIaTTN~~d----------------------------~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l 872 (1167)
...+.+||+|||--. ...|.|+. |++.+|.|.+.+.+...+|+...+
T Consensus 628 r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 628 RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 123588999997421 12456666 999999999999999999998766
Q ss_pred cc---------CCCCCChhHHHHHHHHcc--CCcHHHHHHHHHHH
Q 001066 873 ER---------WPKPVTGSLLKWIAARTA--GFAGADLQALCTQA 906 (1167)
Q Consensus 873 ~~---------~~~~l~d~~L~~LA~~t~--G~s~aDL~~Lv~~A 906 (1167)
.. +...+++.....|+.... .|-.+-|+.++++-
T Consensus 706 ~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~ 750 (786)
T COG0542 706 NRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQE 750 (786)
T ss_pred HHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHH
Confidence 43 233456677777777653 34445555444433
No 180
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.96 E-value=1.6e-09 Score=126.31 Aligned_cols=205 Identities=23% Similarity=0.276 Sum_probs=132.2
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..+.+|+|-....+++.+.+.. + .+...+|||+|++||||+.+|+.|+....+. ..-+|+.++|..+.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-------~----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~-~~~PFI~~NCa~~~ 142 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-------Y----APSGLPVLIIGETGTGKELFARLIHALSARR-AEAPFIAFNCAAYS 142 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-------h----CCCCCcEEEecCCCccHHHHHHHHHHhhhcc-cCCCEEEEEHHHhC
Confidence 4578899999888888887754 1 1445789999999999999999999555442 56789999998765
Q ss_pred hhh-----hchH-------HHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-------
Q 001066 763 GKY-----VGDA-------ERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK------- 823 (1167)
Q Consensus 763 s~~-----~g~~-------e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~------- 823 (1167)
... +|.. ...-..+|+.| ..++||||||+.|.+ ..+..|+..|+.-.
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCH-----------hHHHHHHHHHHcCceEecCCC
Confidence 322 1211 11223445554 348999999999987 67778999998621
Q ss_pred --CCCceEEEccCCCC--CcCCc--ccCCCCCcccccccCCCCHHHHHH----HHHHh----hccCCCCCC---hhHHHH
Q 001066 824 --SRGSVVVIGATNRP--EAVDP--ALRRPGRFDREIYFPLPSMEDRAA----ILSLH----TERWPKPVT---GSLLKW 886 (1167)
Q Consensus 824 --~~~~ViVIaTTN~~--d~Ld~--aLlrpgRF~~~I~~~~P~~eER~e----IL~~~----l~~~~~~l~---d~~L~~ 886 (1167)
....|.+|++|+.. +.+-. .|.+. ++ .+.+..|+..+|.. ++..+ +...+..+. +..+..
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTRR-LN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhhh-hc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 22358888888752 22322 33330 33 34445555555543 22332 233333322 244666
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 001066 887 IAARTAGFAGADLQALCTQAAIIALKRNFP 916 (1167)
Q Consensus 887 LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~ 916 (1167)
|-.+..--+-++|++++.++...+......
T Consensus 286 L~~y~~pGNirELkN~Ve~~~~~~~~~~~~ 315 (403)
T COG1221 286 LLAYDWPGNIRELKNLVERAVAQASGEGQD 315 (403)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHhccccCC
Confidence 666555558899999999998887655544
No 181
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=5.8e-09 Score=119.61 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=124.1
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC---------------
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD--------------- 748 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~--------------- 748 (1167)
.|++|+|++.+++.|...+.. + ..+..+||+||+|+||+++|.++|..+....
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 488999999999999998865 2 3457899999999999999999999875332
Q ss_pred CceEEEEec----ccccchh---hhc-------h-HHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchH
Q 001066 749 KRIAYFARK----GADCLGK---YVG-------D-AERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHS 809 (1167)
Q Consensus 749 ~~i~~~~l~----~~~lls~---~~g-------~-~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~ 809 (1167)
..+.++.-. +...... ..+ . .-..++.+...+.. ....|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 111111110 0000000 000 0 01234455444432 3457999999998864
Q ss_pred HHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 001066 810 SVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAA 889 (1167)
Q Consensus 810 ~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~ 889 (1167)
...+.|+..|+..+ . .++|.+|+.++.|.+.+++ |+ +.|.|++|+.++..++|........ .+..+..++.
T Consensus 139 ~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~---~~~~~~~l~~ 209 (314)
T PRK07399 139 AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI---LNINFPELLA 209 (314)
T ss_pred HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc---chhHHHHHHH
Confidence 56778999998765 3 3556677788999999998 88 8999999999999999987643211 1123467777
Q ss_pred HccCCcHHHHH
Q 001066 890 RTAGFAGADLQ 900 (1167)
Q Consensus 890 ~t~G~s~aDL~ 900 (1167)
.+.|-.+..+.
T Consensus 210 ~a~Gs~~~al~ 220 (314)
T PRK07399 210 LAQGSPGAAIA 220 (314)
T ss_pred HcCCCHHHHHH
Confidence 77775555544
No 182
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.95 E-value=5.1e-09 Score=130.64 Aligned_cols=162 Identities=25% Similarity=0.368 Sum_probs=104.7
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhc-----------------
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCAR----------------- 746 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~----------------- 746 (1167)
-|.+|+|++.++..|.-++..| ...+|||.|++|||||++|++|+..+..
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 3678999999998876655432 1246999999999999999999988721
Q ss_pred -------------CCCceEEEEecccccchhhhchH--HHHHH---HHHH--HHHhcCCcEEEEcCCCCcCcccCccccc
Q 001066 747 -------------GDKRIAYFARKGADCLGKYVGDA--ERQLR---LLFQ--VAEKCQPSIIFFDEIDGLAPCRTRQQDQ 806 (1167)
Q Consensus 747 -------------~~~~i~~~~l~~~~lls~~~g~~--e~~L~---~lF~--~A~~~~psILfIDEID~L~~~~~~~~~~ 806 (1167)
+....+|+.+.........+|.. ...+. ..+. ........|||||||+.|..
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 00123455443332222223321 11110 0010 00112447999999999975
Q ss_pred chHHHHHHHHHHhhcc-----------cCCCceEEEccCCCC-CcCCcccCCCCCcccccccCCCC-HHHHHHHHHHh
Q 001066 807 THSSVVSTLLALMDGL-----------KSRGSVVVIGATNRP-EAVDPALRRPGRFDREIYFPLPS-MEDRAAILSLH 871 (1167)
Q Consensus 807 ~~~~vl~~LL~lLd~l-----------~~~~~ViVIaTTN~~-d~Ld~aLlrpgRF~~~I~~~~P~-~eER~eIL~~~ 871 (1167)
.++..|+..|+.- ....+++||+|+|.. ..+.++|+. ||...|.++.|. .+++.+|+...
T Consensus 141 ---~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 141 ---HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ---HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 7788888888632 112458999998864 357888988 998888888764 57777777653
No 183
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.94 E-value=3.5e-09 Score=122.28 Aligned_cols=193 Identities=18% Similarity=0.129 Sum_probs=121.9
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh--
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY-- 765 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~-- 765 (1167)
|+|....++.+.+.+... .....+|||+|++||||+++|++|.....+. .-+|+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~--~~pfv~vnc~~~~~~~l~ 67 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRW--QGPLVKLNCAALSENLLD 67 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCcc--CCCeEEEeCCCCChHHHH
Confidence 356666666666655431 1345689999999999999999998766532 3478888887553211
Q ss_pred ---hchHHH-------HHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc---------CCC
Q 001066 766 ---VGDAER-------QLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK---------SRG 826 (1167)
Q Consensus 766 ---~g~~e~-------~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~---------~~~ 826 (1167)
+|.... ....+|..| ..++||||||+.|.. .++..|+..|+... ...
T Consensus 68 ~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 68 SELFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred HHHhccccccccCcccccCCchhhC---CCCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceecc
Confidence 111000 001123333 468999999999975 67778888886421 123
Q ss_pred ceEEEccCCCCC-------cCCcccCCCCCcccccccCCCCHHHHHH----HHHHhhc----cCC----CCCChhHHHHH
Q 001066 827 SVVVIGATNRPE-------AVDPALRRPGRFDREIYFPLPSMEDRAA----ILSLHTE----RWP----KPVTGSLLKWI 887 (1167)
Q Consensus 827 ~ViVIaTTN~~d-------~Ld~aLlrpgRF~~~I~~~~P~~eER~e----IL~~~l~----~~~----~~l~d~~L~~L 887 (1167)
.+.||++|+..- .+.+.|.. || ..+.|..|...+|.+ +++.++. .++ ..+++..+..|
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L 210 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RL-AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQL 210 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--Hh-cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHH
Confidence 578888887531 12233433 45 244566666666654 3333332 222 34788888999
Q ss_pred HHHccCCcHHHHHHHHHHHHHHH
Q 001066 888 AARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 888 A~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
..+..-.+.++|++++.++...+
T Consensus 211 ~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 211 LEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HhCCCCchHHHHHHHHHHHHHhC
Confidence 98887778899999998887654
No 184
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.94 E-value=5.8e-10 Score=120.69 Aligned_cols=54 Identities=26% Similarity=0.349 Sum_probs=51.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhcc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMFS 1165 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~~ 1165 (1167)
+||||||||||||+|||||++. ++.|+.++-++|+-+|.|+--+-++++|++..
T Consensus 154 VLFyGppGTGKTm~Akalane~--kvp~l~vkat~liGehVGdgar~Ihely~rA~ 207 (368)
T COG1223 154 VLFYGPPGTGKTMMAKALANEA--KVPLLLVKATELIGEHVGDGARRIHELYERAR 207 (368)
T ss_pred eEEECCCCccHHHHHHHHhccc--CCceEEechHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8999999999999999999998 79999999999999999999999999998753
No 185
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=3.4e-08 Score=109.97 Aligned_cols=196 Identities=17% Similarity=0.195 Sum_probs=115.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEE---ecccccchh---hhc-----h-HHHHHHHH---H-HHHHhcC
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFA---RKGADCLGK---YVG-----D-AERQLRLL---F-QVAEKCQ 784 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~---l~~~~lls~---~~g-----~-~e~~L~~l---F-~~A~~~~ 784 (1167)
..++|+||+|+|||++++.++..+......+..+. .+..+++.. ..| . ....+..+ + .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999988763221111111 111111100 011 1 11111222 2 2233456
Q ss_pred CcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCC-CceEEEccCCC--CCcCC----cccCCCCCcccccccC
Q 001066 785 PSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSR-GSVVVIGATNR--PEAVD----PALRRPGRFDREIYFP 857 (1167)
Q Consensus 785 psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~-~~ViVIaTTN~--~d~Ld----~aLlrpgRF~~~I~~~ 857 (1167)
+.+|+|||++.+.. ..+..|..+.+..... ..+.||.+... .+.+. ..+.+ |+...++++
T Consensus 124 ~~vliiDe~~~l~~-----------~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLTP-----------ELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCCH-----------HHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 78999999998753 2233332222221112 22333333321 11221 23554 777788999
Q ss_pred CCCHHHHHHHHHHhhccCC----CCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhcccc
Q 001066 858 LPSMEDRAAILSLHTERWP----KPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKR 933 (1167)
Q Consensus 858 ~P~~eER~eIL~~~l~~~~----~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~ 933 (1167)
+.+.++..+++...+...+ ..+++..+..|+..+.|.. ..|..++..+...|..++.
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~------------------ 251 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEK------------------ 251 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCC------------------
Confidence 9999999999998876543 3477889999999999864 5599999999888776542
Q ss_pred ccCCccccCHHHHHHHhhcC
Q 001066 934 VTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 934 ~~l~~i~It~~D~~~AL~~~ 953 (1167)
..|+..++..++..+
T Consensus 252 -----~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 252 -----REIGGEEVREVIAEI 266 (269)
T ss_pred -----CCCCHHHHHHHHHHh
Confidence 246677777776654
No 186
>PRK04132 replication factor C small subunit; Provisional
Probab=98.94 E-value=9.3e-09 Score=129.88 Aligned_cols=160 Identities=20% Similarity=0.131 Sum_probs=124.9
Q ss_pred CcEEEEc--CCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhc------CCcEEEEcC
Q 001066 721 RGVLLHG--HPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKC------QPSIIFFDE 792 (1167)
Q Consensus 721 ~~VLL~G--PpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~------~psILfIDE 792 (1167)
-+-+..| |++.||||+|++||+++........++.+++++..+. ..++.++..+... ...|+||||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 3456678 9999999999999999854444467888888864321 2444444443322 236999999
Q ss_pred CCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhh
Q 001066 793 IDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHT 872 (1167)
Q Consensus 793 ID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l 872 (1167)
+|.|.. ..++.|+..|+... ..+.+|++||.+..+.++|++ |+ +.+.|++|+.++...+|...+
T Consensus 639 aD~Lt~-----------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 639 ADALTQ-----------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIA 702 (846)
T ss_pred cccCCH-----------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHH
Confidence 999974 56778999998643 467788889999999999998 88 899999999999999999998
Q ss_pred ccCCCCCChhHHHHHHHHccCCcHHHHHHH
Q 001066 873 ERWPKPVTGSLLKWIAARTAGFAGADLQAL 902 (1167)
Q Consensus 873 ~~~~~~l~d~~L~~LA~~t~G~s~aDL~~L 902 (1167)
...+..+++..+..|+..+.|.....|..|
T Consensus 703 ~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 703 ENEGLELTEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HhcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 877777788999999999998776666544
No 187
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.93 E-value=5.8e-09 Score=123.15 Aligned_cols=146 Identities=25% Similarity=0.341 Sum_probs=92.1
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--CceEEEEecc----
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD--KRIAYFARKG---- 758 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~--~~i~~~~l~~---- 758 (1167)
++++.+-+...+.+...+. ...+++|+||||||||++|+.+|..+.... ..+.++.+..
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 5566677777777665543 246899999999999999999999885321 2233333321
Q ss_pred cccchhhhch------HHHHHHHHHHHHHhc--CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc---------
Q 001066 759 ADCLGKYVGD------AERQLRLLFQVAEKC--QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG--------- 821 (1167)
Q Consensus 759 ~~lls~~~g~------~e~~L~~lF~~A~~~--~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~--------- 821 (1167)
.+++..+... ....+..++..|... .|.|||||||++... +.+...++.+|+.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhccccccccccce
Confidence 2222111111 011233444555543 579999999997653 2344455555541
Q ss_pred -----------ccCCCceEEEccCCCCC----cCCcccCCCCCcccccccCC
Q 001066 822 -----------LKSRGSVVVIGATNRPE----AVDPALRRPGRFDREIYFPL 858 (1167)
Q Consensus 822 -----------l~~~~~ViVIaTTN~~d----~Ld~aLlrpgRF~~~I~~~~ 858 (1167)
+....++.||||+|..+ .+|.||+| || ..|++.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 23345799999999987 68999999 99 5566654
No 188
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.93 E-value=8.1e-09 Score=122.83 Aligned_cols=153 Identities=19% Similarity=0.269 Sum_probs=92.6
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec---ccccchh
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK---GADCLGK 764 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~---~~~lls~ 764 (1167)
|+|.+++++.+...+. ...+|||.||||||||++|++||..+.... .+.++.+. ..++++.
T Consensus 22 i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 22 LYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred ccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeecCcHHhcCc
Confidence 5888888888876652 346899999999999999999999875422 12222221 2222221
Q ss_pred h-hchHHHHHHHHHHHHHhc---CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--C------CCceEEEc
Q 001066 765 Y-VGDAERQLRLLFQVAEKC---QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--S------RGSVVVIG 832 (1167)
Q Consensus 765 ~-~g~~e~~L~~lF~~A~~~---~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~------~~~ViVIa 832 (1167)
. +... .-...|...... ...|||||||..+.+ .+++.|+..|.... . -+..++++
T Consensus 86 l~i~~~--~~~g~f~r~~~G~L~~A~lLfLDEI~rasp-----------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 86 LSIQAL--KDEGRYQRLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHHhhh--hhcCchhhhcCCccccccEEeecccccCCH-----------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 1 0000 001122211111 234999999997765 78889999995421 1 11233444
Q ss_pred cCCCCCc---CCcccCCCCCcccccccCCCC-HHHHHHHHHHh
Q 001066 833 ATNRPEA---VDPALRRPGRFDREIYFPLPS-MEDRAAILSLH 871 (1167)
Q Consensus 833 TTN~~d~---Ld~aLlrpgRF~~~I~~~~P~-~eER~eIL~~~ 871 (1167)
|||...+ ..+++.. ||...|.+|+|+ .++-.+||...
T Consensus 153 ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 5564321 2247877 998889999997 46668888753
No 189
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.92 E-value=3.8e-09 Score=121.81 Aligned_cols=197 Identities=17% Similarity=0.127 Sum_probs=127.2
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG 763 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls 763 (1167)
.+++|+|....++.+.+.+... .....+|||+|++||||+++|++|.....+. .-+|+.++|..+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~~pfv~v~c~~~~~ 70 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALNE 70 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCcc--CCCeEEEeCCCCCH
Confidence 3567899988888888877552 1345689999999999999999998655432 34788888776531
Q ss_pred h-----hhchHHH-------HHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--C-----
Q 001066 764 K-----YVGDAER-------QLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--S----- 824 (1167)
Q Consensus 764 ~-----~~g~~e~-------~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~----- 824 (1167)
. ++|.... .....|. ....++||||||+.|.. .++..|+.+|+.-. .
T Consensus 71 ~~~~~~lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 71 NLLDSELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPM-----------LVQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHHHHccccccccCCcccccCCchh---ccCCCeEEeCChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCc
Confidence 1 1111100 0011232 23568999999999985 67778888886421 1
Q ss_pred --CCceEEEccCCCCC-------cCCcccCCCCCcccccccCCCCHHHHHH----HHHHhhc----cCC----CCCChhH
Q 001066 825 --RGSVVVIGATNRPE-------AVDPALRRPGRFDREIYFPLPSMEDRAA----ILSLHTE----RWP----KPVTGSL 883 (1167)
Q Consensus 825 --~~~ViVIaTTN~~d-------~Ld~aLlrpgRF~~~I~~~~P~~eER~e----IL~~~l~----~~~----~~l~d~~ 883 (1167)
...+.||+||+..- .+.+.|.. || ..+.|..|...+|.+ ++..++. .++ ..+++..
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a 213 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERA 213 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 12478888887531 23344444 55 244556666666654 3333322 222 2467788
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 884 LKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 884 L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
+..|..+..-.+-++|++++.+|...+
T Consensus 214 l~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 214 RETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 888998888888999999998887643
No 190
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.92 E-value=1.8e-09 Score=124.54 Aligned_cols=155 Identities=30% Similarity=0.364 Sum_probs=97.2
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE-Eecccccchhhh
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF-ARKGADCLGKYV 766 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~-~l~~~~lls~~~ 766 (1167)
++|.++++..+...+.. ..++||.||||||||++|+++|..++.....+.+. .+...++++.+.
T Consensus 26 ~~g~~~~~~~~l~a~~~---------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALLA---------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHHc---------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 46666666666555432 46899999999999999999999998433333322 112223333222
Q ss_pred chHHHHHHHHHHHHHh--cCC--cEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc----------ccCCCceEEEc
Q 001066 767 GDAERQLRLLFQVAEK--CQP--SIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG----------LKSRGSVVVIG 832 (1167)
Q Consensus 767 g~~e~~L~~lF~~A~~--~~p--sILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~----------l~~~~~ViVIa 832 (1167)
-.....-...|..... ... .|+|+|||++..+ .+++.|+..|+. +.....++||+
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 2111000111110000 001 4999999998876 788899998876 22345789999
Q ss_pred cCCC-----CCcCCcccCCCCCcccccccCCCCHH-HHHHHHHH
Q 001066 833 ATNR-----PEAVDPALRRPGRFDREIYFPLPSME-DRAAILSL 870 (1167)
Q Consensus 833 TTN~-----~d~Ld~aLlrpgRF~~~I~~~~P~~e-ER~eIL~~ 870 (1167)
|+|. ...++.++++ ||...+.++.|..+ +...++..
T Consensus 160 T~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred ccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHh
Confidence 9994 4467899998 99889999999444 44444443
No 191
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.92 E-value=2.9e-09 Score=126.19 Aligned_cols=200 Identities=22% Similarity=0.302 Sum_probs=138.2
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG 763 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls 763 (1167)
.+..|+|....++++.+.+... .....+|||+|++||||..+|++|+....+.. -+|+.++|..+..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~--~PFVavNcaAip~ 205 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAK--GPFIAVNCAAIPE 205 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccC--CCceeeecccCCH
Confidence 4667899999999999887551 24567899999999999999999988776543 4788888876643
Q ss_pred h-----hhchHHH-------HHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--------
Q 001066 764 K-----YVGDAER-------QLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-------- 823 (1167)
Q Consensus 764 ~-----~~g~~e~-------~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-------- 823 (1167)
. .+|.... .-...|+.| ..+.||||||..+.. .++..||..|+.-.
T Consensus 206 ~l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl-----------~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 206 NLLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPL-----------ELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCCH-----------HHHHHHHHHHHcCeeEecCCCc
Confidence 2 2222111 112345555 448999999998875 77888998887521
Q ss_pred -CCCceEEEccCCCCCcCCcccCCCCCcc-------cccccCCCCHHHHHHHHHHhh----c----cC---CCCCChhHH
Q 001066 824 -SRGSVVVIGATNRPEAVDPALRRPGRFD-------REIYFPLPSMEDRAAILSLHT----E----RW---PKPVTGSLL 884 (1167)
Q Consensus 824 -~~~~ViVIaTTN~~d~Ld~aLlrpgRF~-------~~I~~~~P~~eER~eIL~~~l----~----~~---~~~l~d~~L 884 (1167)
-.-.|.||++||.. |...+. .|+|. .++.+..|...+|.+-+-.++ . .+ ...++...+
T Consensus 272 ~i~vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~ 348 (464)
T COG2204 272 PIKVDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEAL 348 (464)
T ss_pred ccceeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 12258999999874 222222 23442 456777888888877443322 2 22 344677788
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 001066 885 KWIAARTAGFAGADLQALCTQAAIIALKR 913 (1167)
Q Consensus 885 ~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R 913 (1167)
..|..+..--+.++|++++.+++..+...
T Consensus 349 ~~L~~y~WPGNVREL~N~ver~~il~~~~ 377 (464)
T COG2204 349 AALLAYDWPGNVRELENVVERAVILSEGP 377 (464)
T ss_pred HHHHhCCCChHHHHHHHHHHHHHhcCCcc
Confidence 88888877778899999999888765443
No 192
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.91 E-value=6.1e-09 Score=119.17 Aligned_cols=94 Identities=23% Similarity=0.256 Sum_probs=60.0
Q ss_pred CcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC------------CCcCCcccCCCCCccc
Q 001066 785 PSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR------------PEAVDPALRRPGRFDR 852 (1167)
Q Consensus 785 psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~------------~d~Ld~aLlrpgRF~~ 852 (1167)
|+||||||+|.|-- ...+.|-+.|+.-. .-+||.+||+ |.-+|..|+. |+ .
T Consensus 279 pGVLFIDEvHmLDi-----------EcFsfLnralEs~~---sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-l 341 (398)
T PF06068_consen 279 PGVLFIDEVHMLDI-----------ECFSFLNRALESEL---SPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-L 341 (398)
T ss_dssp E-EEEEESGGGSBH-----------HHHHHHHHHHTSTT-----EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-E
T ss_pred cceEEecchhhccH-----------HHHHHHHHHhcCCC---CcEEEEecCceeeeccCccCcCCCCCCcchHh--hc-E
Confidence 88999999998864 44455555665322 2255567764 3456777887 88 7
Q ss_pred ccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCc
Q 001066 853 EIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFA 895 (1167)
Q Consensus 853 ~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s 895 (1167)
+|...+++.++..+||+..+......+++..+..|+......+
T Consensus 342 II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~S 384 (398)
T PF06068_consen 342 IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETS 384 (398)
T ss_dssp EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-
T ss_pred EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhcc
Confidence 8899999999999999999999888888888888877654333
No 193
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.91 E-value=1.1e-09 Score=132.00 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=56.0
Q ss_pred hhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhccc--------ceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1092 CSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIG--------NVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1092 ~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G--------~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
..++...+..++++ +|||||||||||+||++||++|.- ...|+++++++++++|+|++|++++.||+.
T Consensus 205 ~~l~~~~gl~~p~G----ILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~ 280 (512)
T TIGR03689 205 PELYREYDLKPPKG----VLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQR 280 (512)
T ss_pred HHHHHhccCCCCcc----eEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHH
Confidence 33444455544444 999999999999999999998720 245889999999999999999999999986
Q ss_pred c
Q 001066 1164 F 1164 (1167)
Q Consensus 1164 ~ 1164 (1167)
.
T Consensus 281 A 281 (512)
T TIGR03689 281 A 281 (512)
T ss_pred H
Confidence 3
No 194
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.90 E-value=5.2e-09 Score=127.38 Aligned_cols=199 Identities=22% Similarity=0.321 Sum_probs=125.2
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhh------cCCCceEEEEe
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCA------RGDKRIAYFAR 756 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~------~~~~~i~~~~l 756 (1167)
..|++|+|....++.+.+.+... .....+|||+|++||||+++|++|...+. .....-+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 36889999999999988887541 13456899999999999999999988621 11234588888
Q ss_pred cccccchh-----hhchHHH--------HHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc
Q 001066 757 KGADCLGK-----YVGDAER--------QLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK 823 (1167)
Q Consensus 757 ~~~~lls~-----~~g~~e~--------~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~ 823 (1167)
+|..+... .+|..+. .-..+|+.| ..+.||||||+.|.. .++..|+..|+...
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~-----------~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPL-----------PLQTRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCH-----------HHHHHHHhhhhcCe
Confidence 88765422 1121111 011244443 458999999999986 67778888886521
Q ss_pred ---------CCCceEEEccCCCCCcCCcccCCCCCcc-------cccccCCCCHHHHHH----HHHHhhcc----CCCCC
Q 001066 824 ---------SRGSVVVIGATNRPEAVDPALRRPGRFD-------REIYFPLPSMEDRAA----ILSLHTER----WPKPV 879 (1167)
Q Consensus 824 ---------~~~~ViVIaTTN~~d~Ld~aLlrpgRF~-------~~I~~~~P~~eER~e----IL~~~l~~----~~~~l 879 (1167)
....+.||++|+..- ...+ ..|+|. ..+.+..|...+|.+ +++.++.. +...+
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L--~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDL--EEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred EEecCCCceeccceEEEEecCCCH--HHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 112468888887642 1111 122332 245667777777765 33333332 33344
Q ss_pred ChhHH-------HHHHHHccCCcHHHHHHHHHHHHHH
Q 001066 880 TGSLL-------KWIAARTAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 880 ~d~~L-------~~LA~~t~G~s~aDL~~Lv~~A~~~ 909 (1167)
+...+ ..|..+..-.+-++|++++.+++.+
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 44433 4555555666888888888887764
No 195
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.90 E-value=5.1e-09 Score=127.49 Aligned_cols=200 Identities=20% Similarity=0.227 Sum_probs=125.9
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..|++|+|....++.+.+.+... .....+|||+|++||||+++|++|.....+ ..-+|+.++|..+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r--~~~pfv~inC~~l~ 275 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGR--RDFPFVAINCGAIA 275 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCc--CCCCEEEeccccCC
Confidence 46889999999999888877541 134568999999999999999999876543 23578888887653
Q ss_pred hh-----hhchHHH--------HHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc------
Q 001066 763 GK-----YVGDAER--------QLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK------ 823 (1167)
Q Consensus 763 s~-----~~g~~e~--------~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~------ 823 (1167)
.. .+|..+. ....+|+.| ..+.||||||+.|.. .++..|+..|+...
T Consensus 276 e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~-----------~~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 276 ESLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPL-----------PLQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred hhHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCH-----------HHHHHHHHHHhcCcEEecCC
Confidence 22 1111110 112234433 458999999999986 67778888886421
Q ss_pred ---CCCceEEEccCCCCC--cCCcccCCC---CCcccccccCCCCHHHHHHH----HHHhhcc----CCCCCChhHHHH-
Q 001066 824 ---SRGSVVVIGATNRPE--AVDPALRRP---GRFDREIYFPLPSMEDRAAI----LSLHTER----WPKPVTGSLLKW- 886 (1167)
Q Consensus 824 ---~~~~ViVIaTTN~~d--~Ld~aLlrp---gRF~~~I~~~~P~~eER~eI----L~~~l~~----~~~~l~d~~L~~- 886 (1167)
....+.+|++|+..- .+.....+. .|+ ..+.+..|...+|.+- +..++.. +...+++..+..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 112467888887642 111111110 023 2455667777777653 3333332 233456566655
Q ss_pred ------HHHHccCCcHHHHHHHHHHHHHHH
Q 001066 887 ------IAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 887 ------LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
|..+..-.+-++|++++.++...+
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 666666677888888888776543
No 196
>PHA02244 ATPase-like protein
Probab=98.90 E-value=9.1e-09 Score=118.77 Aligned_cols=121 Identities=21% Similarity=0.323 Sum_probs=80.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc----ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA----DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDG 795 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~----~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~ 795 (1167)
..+|||+||||||||+||++||..++ .+|+.++.. .+.+ +..........-|-.+. ....+||||||+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg-----~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~ 191 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALD-----LDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDA 191 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCc
Confidence 45799999999999999999999887 345544321 1111 11110000111222332 3578999999998
Q ss_pred cCcccCcccccchHHHHHHHHHHhhc---------ccCCCceEEEccCCCC-----------CcCCcccCCCCCcccccc
Q 001066 796 LAPCRTRQQDQTHSSVVSTLLALMDG---------LKSRGSVVVIGATNRP-----------EAVDPALRRPGRFDREIY 855 (1167)
Q Consensus 796 L~~~~~~~~~~~~~~vl~~LL~lLd~---------l~~~~~ViVIaTTN~~-----------d~Ld~aLlrpgRF~~~I~ 855 (1167)
+.+ .++..|..+++. +....++.||+|+|.+ ..+++++++ || ..|+
T Consensus 192 a~p-----------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~ 257 (383)
T PHA02244 192 SIP-----------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIE 257 (383)
T ss_pred CCH-----------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEee
Confidence 875 555566666652 2345679999999973 357889998 99 5799
Q ss_pred cCCCCH
Q 001066 856 FPLPSM 861 (1167)
Q Consensus 856 ~~~P~~ 861 (1167)
|..|+.
T Consensus 258 ~dyp~~ 263 (383)
T PHA02244 258 FDYDEK 263 (383)
T ss_pred CCCCcH
Confidence 999874
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.90 E-value=1e-08 Score=99.66 Aligned_cols=125 Identities=35% Similarity=0.458 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchh--------------hhchHHHHHHHHHHHHHhcCC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGK--------------YVGDAERQLRLLFQVAEKCQP 785 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~--------------~~g~~e~~L~~lF~~A~~~~p 785 (1167)
...++|+||||||||++++.+|..+.... ..++.++....... ........+..++..+....+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 45799999999999999999999887543 13444444332211 112344566788888888778
Q ss_pred cEEEEcCCCCcCcccCcccccchHHHHHHHHH------HhhcccCCCceEEEccCCC-CCcCCcccCCCCCcccccccCC
Q 001066 786 SIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLA------LMDGLKSRGSVVVIGATNR-PEAVDPALRRPGRFDREIYFPL 858 (1167)
Q Consensus 786 sILfIDEID~L~~~~~~~~~~~~~~vl~~LL~------lLd~l~~~~~ViVIaTTN~-~d~Ld~aLlrpgRF~~~I~~~~ 858 (1167)
.||||||++.+.... ...... ..........+.+|+++|. ....+..+.+ |++..+.+..
T Consensus 80 ~viiiDei~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~ 146 (148)
T smart00382 80 DVLILDEITSLLDAE-----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLL 146 (148)
T ss_pred CEEEEECCcccCCHH-----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecC
Confidence 999999999987511 111111 1112223455778888885 3333444544 6766766654
Q ss_pred C
Q 001066 859 P 859 (1167)
Q Consensus 859 P 859 (1167)
+
T Consensus 147 ~ 147 (148)
T smart00382 147 I 147 (148)
T ss_pred C
Confidence 3
No 198
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.90 E-value=9.6e-08 Score=103.17 Aligned_cols=176 Identities=18% Similarity=0.204 Sum_probs=122.2
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
....+.+.+|+|++.+++.|.+.-...+. | .+.++|||+|..||||++|++|+..++..... .++.++-
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl--rLVEV~k 121 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGL--RLVEVDK 121 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCC--eEEEEcH
Confidence 34457899999999999998776544221 2 45688999999999999999999998875443 3666655
Q ss_pred cccchhhhchHHHHHHHHHHHHHh-cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc--cCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEK-CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL--KSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~-~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l--~~~~~ViVIaTTN 835 (1167)
.++. .+-.+++..+. .+.-|||+|++--=. .......|-..|++- ....+|+|.||+|
T Consensus 122 ~dl~---------~Lp~l~~~Lr~~~~kFIlFcDDLSFe~----------gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 EDLA---------TLPDLVELLRARPEKFILFCDDLSFEE----------GDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HHHh---------hHHHHHHHHhcCCceEEEEecCCCCCC----------CchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 5443 23345555543 356899999974211 123344555666653 2245799999999
Q ss_pred CCCcCCc--------------------ccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHH
Q 001066 836 RPEAVDP--------------------ALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLL 884 (1167)
Q Consensus 836 ~~d~Ld~--------------------aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L 884 (1167)
+...|+. .+.-..||...+.|++++.++.+.|+..++..++..+++..+
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l 251 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEEL 251 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 8553321 111134999999999999999999999999998887765444
No 199
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.88 E-value=5.3e-09 Score=122.42 Aligned_cols=198 Identities=23% Similarity=0.325 Sum_probs=136.0
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..+..|+|....+.++.+.|.. -.....+|||.|.+||||..+|++|.....+.. -+|+.++|+.+.
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~-----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~--kPfV~~NCAAlP 286 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEV-----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRD--KPFVKLNCAALP 286 (550)
T ss_pred cccccceecCHHHHHHHHHHHH-----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccC--CCceeeeccccc
Confidence 4667899999999999988765 224567899999999999999999998877654 367888887765
Q ss_pred hh-----hhchHHHHH-------HHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-------
Q 001066 763 GK-----YVGDAERQL-------RLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK------- 823 (1167)
Q Consensus 763 s~-----~~g~~e~~L-------~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~------- 823 (1167)
.. .+|.-...+ ..-|+.| ..+.||||||..|.. .++..||..|+.-.
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElA---dGGTLFLDEIGelPL-----------~lQaKLLRvLQegEieRvG~~ 352 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELA---DGGTLFLDEIGELPL-----------ALQAKLLRVLQEGEIERVGGD 352 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeec---CCCeEechhhccCCH-----------HHHHHHHHHHhhcceeecCCC
Confidence 32 233222222 2224444 347999999999876 67778888886521
Q ss_pred --CCCceEEEccCCCCCcCCcccCCCCCcc-------cccccCCCCHHHHHHHH--------HHhhccC---CCCCChhH
Q 001066 824 --SRGSVVVIGATNRPEAVDPALRRPGRFD-------REIYFPLPSMEDRAAIL--------SLHTERW---PKPVTGSL 883 (1167)
Q Consensus 824 --~~~~ViVIaTTN~~d~Ld~aLlrpgRF~-------~~I~~~~P~~eER~eIL--------~~~l~~~---~~~l~d~~ 883 (1167)
-.-.|.|||+||+. |-.+++ .|+|. .++.+..|...+|..-+ +.....+ ...++...
T Consensus 353 r~ikVDVRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~A 429 (550)
T COG3604 353 RTIKVDVRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEA 429 (550)
T ss_pred ceeEEEEEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHH
Confidence 11248999999973 222222 33443 23444567777765422 2222222 34567788
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 884 LKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 884 L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
++.|..+..--+.++|++++.+|+..|
T Consensus 430 l~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 430 LELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 898988887778999999999999988
No 200
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.88 E-value=8.7e-09 Score=117.39 Aligned_cols=154 Identities=23% Similarity=0.291 Sum_probs=102.9
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC------------------
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD------------------ 748 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~------------------ 748 (1167)
+++|.+.....+...+... + ..+..+||+||||+|||++|.++|+.+....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 4566777777776665421 1 2233599999999999999999999987432
Q ss_pred -CceEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc
Q 001066 749 -KRIAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK 823 (1167)
Q Consensus 749 -~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~ 823 (1167)
....++.++..+....- -....++.+...... ....||+|||+|.+.. ...+.|+..|+...
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lEep~ 137 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEEPP 137 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhccCC
Confidence 12355555555433221 123344444443332 3457999999999875 66778888887543
Q ss_pred CCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHH
Q 001066 824 SRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILS 869 (1167)
Q Consensus 824 ~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~ 869 (1167)
.+..+|.+||.+..+-+.+++ |+ ..+.|++|+.......+.
T Consensus 138 --~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 138 --KNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred --CCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 446677788999999999998 88 788998766555544443
No 201
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.87 E-value=8.3e-09 Score=125.86 Aligned_cols=197 Identities=21% Similarity=0.248 Sum_probs=128.9
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchh
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGK 764 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~ 764 (1167)
+.+|+|....++.+.+.+... .....+|||+|++||||+++|++|+....+. ..+|+.++|..+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALPES 252 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCChH
Confidence 456789888888888877551 2345789999999999999999999876543 347777777765321
Q ss_pred -----hhchHHHH-------HHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc---------
Q 001066 765 -----YVGDAERQ-------LRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--------- 823 (1167)
Q Consensus 765 -----~~g~~e~~-------L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--------- 823 (1167)
.+|..... ....|.. ...++||||||+.|.. .++..|+..|+.-.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELPL-----------ALQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCCH-----------HHHHHHHHHHhcCCEeeCCCCcc
Confidence 11111000 0112333 3468999999999985 67778888886421
Q ss_pred CCCceEEEccCCCCC-------cCCcccCCCCCcccccccCCCCHHHHHHHH----HHhhc----cC---CCCCChhHHH
Q 001066 824 SRGSVVVIGATNRPE-------AVDPALRRPGRFDREIYFPLPSMEDRAAIL----SLHTE----RW---PKPVTGSLLK 885 (1167)
Q Consensus 824 ~~~~ViVIaTTN~~d-------~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL----~~~l~----~~---~~~l~d~~L~ 885 (1167)
....+.||++|+..- .+...|.. |+ ..+.|..|...+|.+-+ +.++. .+ ...+++..+.
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYH--RL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHh--cc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 112578888887642 12222222 33 24456677777775533 22222 22 2457788899
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHH
Q 001066 886 WIAARTAGFAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 886 ~LA~~t~G~s~aDL~~Lv~~A~~~A~ 911 (1167)
.|..+..-.+-++|++++.+|+..+.
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 99998888899999999999887654
No 202
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.86 E-value=2.4e-09 Score=126.40 Aligned_cols=65 Identities=25% Similarity=0.383 Sum_probs=56.4
Q ss_pred hhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1094 LLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1094 ~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++...+..++++ +|||||||||||+||++||+.+ + .+|+.+++++++++|+|++++.++++|..+
T Consensus 156 ~~~~~g~~~p~g----vLL~GppGtGKT~lAkaia~~~-~-~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a 220 (389)
T PRK03992 156 LFEEVGIEPPKG----VLLYGPPGTGKTLLAKAVAHET-N-ATFIRVVGSELVQKFIGEGARLVRELFELA 220 (389)
T ss_pred HHHhcCCCCCCc----eEEECCCCCChHHHHHHHHHHh-C-CCEEEeehHHHhHhhccchHHHHHHHHHHH
Confidence 334445555554 9999999999999999999999 3 899999999999999999999999999864
No 203
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.86 E-value=4.1e-08 Score=123.98 Aligned_cols=197 Identities=20% Similarity=0.276 Sum_probs=127.1
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG 763 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls 763 (1167)
.|++++|....++.+.+.+... .....+|||+|++|||||++|++|+...... ..+|+.++|..+..
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~~ 440 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMPA 440 (686)
T ss_pred cccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCCh
Confidence 5677899999888888776541 1334689999999999999999998876533 34677777765432
Q ss_pred h-----hhchHH-------HHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--------
Q 001066 764 K-----YVGDAE-------RQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-------- 823 (1167)
Q Consensus 764 ~-----~~g~~e-------~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-------- 823 (1167)
. .+|... ......|.. ...++||||||+.|.. .++..|+..|+...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~---a~~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFEL---ADKSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHh---cCCCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCCCCC
Confidence 1 122110 011122333 3468999999999975 67778888886421
Q ss_pred -CCCceEEEccCCCCC--cCC-----cccCCCCCcccccccCCCCHHHHHHH----HHHhhcc----CCC---CCChhHH
Q 001066 824 -SRGSVVVIGATNRPE--AVD-----PALRRPGRFDREIYFPLPSMEDRAAI----LSLHTER----WPK---PVTGSLL 884 (1167)
Q Consensus 824 -~~~~ViVIaTTN~~d--~Ld-----~aLlrpgRF~~~I~~~~P~~eER~eI----L~~~l~~----~~~---~l~d~~L 884 (1167)
...++.||++|+..- .+. ..|.. |+ ..+.|..|...+|.+- ++.++.. ++. .+++..+
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 123578888887642 111 11211 23 2455677777777653 3333322 222 3677888
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 885 KWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 885 ~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
..|..+..-.+-++|++++.+|+..+
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 88888888889999999999887643
No 204
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.86 E-value=7.7e-09 Score=126.36 Aligned_cols=198 Identities=20% Similarity=0.245 Sum_probs=126.3
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|....++.+.+.+... .....+|||+|++||||+++|++|.....+. .-+|+.++|..+.
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~--~~pfv~inca~~~ 267 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRG--KKPFLALNCASIP 267 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeccccCC
Confidence 57889999998888777766431 1234579999999999999999987765432 3477888887654
Q ss_pred hhh-----hchHH-------HHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc--cC----
Q 001066 763 GKY-----VGDAE-------RQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL--KS---- 824 (1167)
Q Consensus 763 s~~-----~g~~e-------~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l--~~---- 824 (1167)
... +|... .....+|+.| ..++||||||+.|.. .++..|+.+|+.- ..
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSP-----------RMQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCH-----------HHHHHHHHHHhcCCcccCCCC
Confidence 211 11110 0011234433 458999999999976 6677888888652 11
Q ss_pred ---CCceEEEccCCCCC-c------CCcccCCCCCcccccccCCCCHHHHHH----HHHHh----hccCC---CCCChhH
Q 001066 825 ---RGSVVVIGATNRPE-A------VDPALRRPGRFDREIYFPLPSMEDRAA----ILSLH----TERWP---KPVTGSL 883 (1167)
Q Consensus 825 ---~~~ViVIaTTN~~d-~------Ld~aLlrpgRF~~~I~~~~P~~eER~e----IL~~~----l~~~~---~~l~d~~ 883 (1167)
...+.||+||+.+- . +.+.|.. |+ ..+.+..|...+|.+ ++..+ ...++ ..+++..
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a 410 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RL-NVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADL 410 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hc-CeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHH
Confidence 12477888886542 1 2233333 44 235566677766653 22222 22232 2467788
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 884 LKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 884 L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
+..|..+...-+-++|++++.+|...+
T Consensus 411 ~~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 411 NTVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 888888877778899999988887654
No 205
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.5e-09 Score=118.48 Aligned_cols=64 Identities=22% Similarity=0.389 Sum_probs=57.9
Q ss_pred hhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1095 LQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1095 ~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
+++.++.|+++ +|||||||||||+||++||..+ | +||+.+-.++|+++|||||=.=+|+-|.-.
T Consensus 158 f~rvgIk~Pkg----~ll~GppGtGKTlla~~Vaa~m-g-~nfl~v~ss~lv~kyiGEsaRlIRemf~yA 221 (388)
T KOG0651|consen 158 FLRVGIKPPKG----LLLYGPPGTGKTLLARAVAATM-G-VNFLKVVSSALVDKYIGESARLIRDMFRYA 221 (388)
T ss_pred ccccCCCCCce----eEEeCCCCCchhHHHHHHHHhc-C-CceEEeeHhhhhhhhcccHHHHHHHHHHHH
Confidence 35667777777 9999999999999999999999 5 999999999999999999999999998643
No 206
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.84 E-value=4.1e-09 Score=103.72 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=50.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
|||+||||||||.||++||+.+ + .+|+.++++++.+.|.++++++++.+|.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-~-~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~ 53 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-G-FPFIEIDGSELISSYAGDSEQKIRDFFKKA 53 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-T-SEEEEEETTHHHTSSTTHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc-c-cccccccccccccccccccccccccccccc
Confidence 6999999999999999999999 4 999999999999999999999999999985
No 207
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.6e-08 Score=116.85 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=107.1
Q ss_pred CcccccC-hHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--------------
Q 001066 684 GFESVAG-LQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------- 748 (1167)
Q Consensus 684 ~~ddL~G-le~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------- 748 (1167)
.|+.|.| ++.+++.|...+.. + ..++.+||+||+|+|||++|+++|+.+....
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------N-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3777888 88899988888754 1 3456789999999999999999999875321
Q ss_pred -------CceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHH
Q 001066 749 -------KRIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLA 817 (1167)
Q Consensus 749 -------~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~ 817 (1167)
..+.++..+... -.-..++.+.+.+. .....|++||++|.+.. ...+.|+.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~-------i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK 132 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQS-------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLK 132 (329)
T ss_pred HHhcCCCCCEEEecccccc-------CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHH
Confidence 112222211110 01133444444333 23456999999998864 56778999
Q ss_pred HhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHH
Q 001066 818 LMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSL 870 (1167)
Q Consensus 818 lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~ 870 (1167)
.|+.. ...+++|.+|+.+..|.+.+++ |+ ..++|++|+.++..++|..
T Consensus 133 ~LEEP--p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEEP--SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcCC--CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 98864 3456666688888899999998 88 8999999999998888864
No 208
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.82 E-value=8.3e-08 Score=119.06 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=44.4
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG 747 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 747 (1167)
.+..-|++++|.++++..+..++.. ..+++|+||||||||++++++|..+...
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3445688999999999988887753 2489999999999999999999998754
No 209
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=4.2e-08 Score=113.21 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=107.3
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc-------------------eEEEEecccccchhhhchHHHHHHHHHH
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR-------------------IAYFARKGADCLGKYVGDAERQLRLLFQ 778 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~-------------------i~~~~l~~~~lls~~~g~~e~~L~~lF~ 778 (1167)
..+..+||+||+|+|||++|+++|+.+...... -.++.+....- +.. -.-..++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHH
Confidence 345679999999999999999999988643210 11222211000 000 11234455544
Q ss_pred HHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCccccc
Q 001066 779 VAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREI 854 (1167)
Q Consensus 779 ~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I 854 (1167)
.+. .....|++||++|.+.. ...+.|+..|+..+ +++++|.+|+.++.|.+.+++ |+ +.+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc-~~~ 160 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RC-QQQ 160 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hc-eee
Confidence 443 34467999999999875 66788999998743 567888899999999999999 99 779
Q ss_pred ccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 855 YFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 855 ~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
.|++|+.++..+.|...... ..+.....++..+.|-....+
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~----~~~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE----SDERERIELLTLAGGSPLRAL 201 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc----CChHHHHHHHHHcCCCHHHHH
Confidence 99999999998888765321 234445566666766444433
No 210
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.82 E-value=1.7e-08 Score=126.34 Aligned_cols=197 Identities=18% Similarity=0.245 Sum_probs=125.6
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..|++|+|....++.+.+.+... .....+|||+|++||||+++|++|+....+. .-+|+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~~ 388 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLYP 388 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCCC
Confidence 36888899888888777766441 1345679999999999999999998876532 2478888877653
Q ss_pred h-----hhhchH----HHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--CC------
Q 001066 763 G-----KYVGDA----ERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--SR------ 825 (1167)
Q Consensus 763 s-----~~~g~~----e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~~------ 825 (1167)
. .++|.. .......|+. ...++||||||+.|.. .++..|+..|+.-. ..
T Consensus 389 ~~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 389 DEALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSP-----------ELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred hHHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceE
Confidence 2 122211 0000012222 3468999999999976 67778888886421 11
Q ss_pred -CceEEEccCCCCCcCCcccCCCCCcc-------cccccCCCCHHHHHH----HHHHhhcc----C--CCCCChhHHHHH
Q 001066 826 -GSVVVIGATNRPEAVDPALRRPGRFD-------REIYFPLPSMEDRAA----ILSLHTER----W--PKPVTGSLLKWI 887 (1167)
Q Consensus 826 -~~ViVIaTTN~~d~Ld~aLlrpgRF~-------~~I~~~~P~~eER~e----IL~~~l~~----~--~~~l~d~~L~~L 887 (1167)
-.+.||+||+..- . .+...++|. ..+.+..|...+|.+ +++.++.. + ...+++..+..|
T Consensus 455 ~~~~riI~~t~~~l--~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 455 PVDVRVIATTTADL--A-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EeeEEEEEeccCCH--H-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 1578888887642 1 111112331 245566777777753 23333322 1 234678888889
Q ss_pred HHHccCCcHHHHHHHHHHHHHH
Q 001066 888 AARTAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 888 A~~t~G~s~aDL~~Lv~~A~~~ 909 (1167)
..+...-+.++|++++++|...
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHh
Confidence 8888777889999998887654
No 211
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.82 E-value=4.4e-09 Score=124.16 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=55.6
Q ss_pred hhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1094 LLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1094 ~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++.+.+..++++ +|||||||||||+||++||+++ +.+|+++.+++++++|+|++++.++++|...
T Consensus 170 ~~~~~Gl~~pkg----vLL~GppGTGKT~LAkalA~~l--~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A 234 (398)
T PTZ00454 170 LYEQIGIDPPRG----VLLYGPPGTGKTMLAKAVAHHT--TATFIRVVGSEFVQKYLGEGPRMVRDVFRLA 234 (398)
T ss_pred HHHhcCCCCCce----EEEECCCCCCHHHHHHHHHHhc--CCCEEEEehHHHHHHhcchhHHHHHHHHHHH
Confidence 334445444444 9999999999999999999999 3899999999999999999999999999753
No 212
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3e-09 Score=124.40 Aligned_cols=52 Identities=17% Similarity=0.338 Sum_probs=50.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLS 1162 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~ 1162 (1167)
++||.|||||||||||+|||.+. +.+||+|.-|.|.|||.||+|+.||-||+
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~--~atff~iSassLtsK~~Ge~eK~vralf~ 239 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATES--GATFFNISASSLTSKYVGESEKLVRALFK 239 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhh--cceEeeccHHHhhhhccChHHHHHHHHHH
Confidence 49999999999999999999999 49999999999999999999999999995
No 213
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.80 E-value=3.1e-09 Score=113.97 Aligned_cols=127 Identities=19% Similarity=0.321 Sum_probs=69.3
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC----ceE-EEEecc
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK----RIA-YFARKG 758 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~----~i~-~~~l~~ 758 (1167)
.|.+|+|++..|+.|.-+..- ..+|||+||||||||++|+.+...+-.... .+. ++++..
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 478999999999998776542 368999999999999999999876532110 000 000000
Q ss_pred ----cccch--hhhch-HHHHHHHHHH--------HHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc-
Q 001066 759 ----ADCLG--KYVGD-AERQLRLLFQ--------VAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL- 822 (1167)
Q Consensus 759 ----~~lls--~~~g~-~e~~L~~lF~--------~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l- 822 (1167)
..+.. .+..- .......++- +......+||||||+-.+.. .++..|+..|+.-
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~-----------~vld~Lr~ple~g~ 134 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDR-----------SVLDALRQPLEDGE 134 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-H-----------HHHHHHHHHHHHSB
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCH-----------HHHHHHHHHHHCCe
Confidence 00000 00000 0000111111 12223558999999987754 8888888888642
Q ss_pred ----------cCCCceEEEccCCC
Q 001066 823 ----------KSRGSVVVIGATNR 836 (1167)
Q Consensus 823 ----------~~~~~ViVIaTTN~ 836 (1167)
....++++|+|+|.
T Consensus 135 v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 135 VTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp EEEEETTEEEEEB--EEEEEEE-S
T ss_pred EEEEECCceEEEecccEEEEEecc
Confidence 12346899999974
No 214
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=5.3e-08 Score=120.33 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=114.3
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc-eEEE---Ee-c
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR-IAYF---AR-K 757 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~-i~~~---~l-~ 757 (1167)
..+++|+|..+.++.|..++... .++..+...++|+||||+|||++++.||..++..... .+.+ .. +
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 47899999999999998887542 1122334459999999999999999999987643211 0100 00 0
Q ss_pred -------ccccchhhhchHHHHHHHHHHHHHh----------cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHH-Hh
Q 001066 758 -------GADCLGKYVGDAERQLRLLFQVAEK----------CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLA-LM 819 (1167)
Q Consensus 758 -------~~~lls~~~g~~e~~L~~lF~~A~~----------~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~-lL 819 (1167)
....+..+ ......+..++..+.. ....|||||||+.+... ....+..++. ..
T Consensus 153 ~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r--------~~~~lq~lLr~~~ 223 (637)
T TIGR00602 153 DHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR--------DTRALHEILRWKY 223 (637)
T ss_pred ccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh--------hHHHHHHHHHHHh
Confidence 00001111 1122334444444431 24579999999977631 1123444444 22
Q ss_pred hcccCCCceEEEccCC-CCC--------------cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCC------C
Q 001066 820 DGLKSRGSVVVIGATN-RPE--------------AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPK------P 878 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN-~~d--------------~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~------~ 878 (1167)
. ..+.+.+|++++ .+. .|.+++++..|. .+|.|++.+..+..+.|...+..... .
T Consensus 224 ~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~ 299 (637)
T TIGR00602 224 V---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIK 299 (637)
T ss_pred h---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccc
Confidence 1 233444444333 111 133566643345 57899999999977777776654311 1
Q ss_pred -CChhHHHHHHHHccCCcHHHHHHH
Q 001066 879 -VTGSLLKWIAARTAGFAGADLQAL 902 (1167)
Q Consensus 879 -l~d~~L~~LA~~t~G~s~aDL~~L 902 (1167)
.....+..|+....|....+|..|
T Consensus 300 ~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 300 VPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred cCCHHHHHHHHHhCCChHHHHHHHH
Confidence 134578888887777665555554
No 215
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=5.6e-08 Score=108.29 Aligned_cols=129 Identities=26% Similarity=0.383 Sum_probs=85.2
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhc-cCC-CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc-hh
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDN-LGL-TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL-GK 764 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~-lgl-~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll-s~ 764 (1167)
++|++..++.|.=++.....+...... -.+ -...+|||.||+|+|||.||+.+|+.+. ++|...++..+. ..
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln-----VPFaiADATtLTEAG 137 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN-----VPFAIADATTLTEAG 137 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC-----CCeeeccccchhhcc
Confidence 477777776654443221111110000 001 1246799999999999999999999987 788777777765 45
Q ss_pred hhchH-HHHHHHHHHHH----HhcCCcEEEEcCCCCcCcccCc---ccccchHHHHHHHHHHhhc
Q 001066 765 YVGDA-ERQLRLLFQVA----EKCQPSIIFFDEIDGLAPCRTR---QQDQTHSSVVSTLLALMDG 821 (1167)
Q Consensus 765 ~~g~~-e~~L~~lF~~A----~~~~psILfIDEID~L~~~~~~---~~~~~~~~vl~~LL~lLd~ 821 (1167)
|+|+- +..+..++..| .+.+.+||||||||.+..+... .-+-...-++++||.+|++
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 77765 44455555533 2356799999999999864321 1234457899999999987
No 216
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.78 E-value=1.3e-07 Score=114.46 Aligned_cols=229 Identities=20% Similarity=0.233 Sum_probs=146.8
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhc-----CCCceEEEEecccccc
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCAR-----GDKRIAYFARKGADCL 762 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~-----~~~~i~~~~l~~~~ll 762 (1167)
|.+.+.....|..++...+.. . ....-++++|-||||||++++.+...+.. ....+.|+.+++..+.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~----~----~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD----Q----GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC----C----CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 467888888888877654321 0 11236889999999999999999887652 2456788888877664
Q ss_pred hh----------hhch------HHHHHHHHHHHH-HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc-cC
Q 001066 763 GK----------YVGD------AERQLRLLFQVA-EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL-KS 824 (1167)
Q Consensus 763 s~----------~~g~------~e~~L~~lF~~A-~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l-~~ 824 (1167)
+. +.+. .-..+..-|... ....+.||+|||+|.|.. +-+..|+++++.. ..
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvt-----------r~QdVlYn~fdWpt~~ 538 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVT-----------RSQDVLYNIFDWPTLK 538 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhc-----------ccHHHHHHHhcCCcCC
Confidence 31 1111 111122222211 124578999999999986 3344666777765 34
Q ss_pred CCceEEEccCCCCCc----CCcccCCCCCc-ccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 825 RGSVVVIGATNRPEA----VDPALRRPGRF-DREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 825 ~~~ViVIaTTN~~d~----Ld~aLlrpgRF-~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.+++||+.+|..+. |...+.+ |+ ...|.|.+++..|..+|+...+... ..+....++.+|+..+..+|..-
T Consensus 539 ~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 539 NSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred CCceEEEEecccccCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHH
Confidence 567888877776543 2233333 44 2568999999999999999998876 33456677777777665555443
Q ss_pred H--HHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCC
Q 001066 900 Q--ALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSP 954 (1167)
Q Consensus 900 ~--~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~ 954 (1167)
+ .+|++|...|..+...- .....-.++..++.+|+..+.
T Consensus 616 raldic~RA~Eia~~~~~~~----------------k~~~~q~v~~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNVKG----------------KLAVSQLVGILHVMEAINEML 656 (767)
T ss_pred HHHHHHHHHHHHhhhhcccc----------------cccccceeehHHHHHHHHHHh
Confidence 3 67888888887665310 111123456677777777664
No 217
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.78 E-value=2.9e-09 Score=107.08 Aligned_cols=110 Identities=28% Similarity=0.407 Sum_probs=67.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc------cchhhhchH-HHH-HHHHHHHHHhcCCcEEEEcCC
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD------CLGKYVGDA-ERQ-LRLLFQVAEKCQPSIIFFDEI 793 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~------lls~~~g~~-e~~-L~~lF~~A~~~~psILfIDEI 793 (1167)
+|||+||||||||++|+.+|..++ .+++.+.+.. +++.+.-.. ... ....+-.+. ..+.|||||||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCc
Confidence 589999999999999999999995 3444333322 222221110 000 000000111 15789999999
Q ss_pred CCcCcccCcccccchHHHHHHHHHHhhccc-----------CCC------ceEEEccCCCCC----cCCcccCCCCCc
Q 001066 794 DGLAPCRTRQQDQTHSSVVSTLLALMDGLK-----------SRG------SVVVIGATNRPE----AVDPALRRPGRF 850 (1167)
Q Consensus 794 D~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-----------~~~------~ViVIaTTN~~d----~Ld~aLlrpgRF 850 (1167)
+...+ .++..|+.+|+... ... ++.||+|+|... .++++|++ ||
T Consensus 75 n~a~~-----------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 75 NRAPP-----------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp GG--H-----------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ccCCH-----------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 97754 77888888887521 111 389999999988 78999998 87
No 218
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.75 E-value=2.1e-07 Score=108.11 Aligned_cols=178 Identities=21% Similarity=0.321 Sum_probs=113.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC--ceEE--EEe---
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK--RIAY--FAR--- 756 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~--~i~~--~~l--- 756 (1167)
-|..++|.+.++..|.-.... +.-.++||.|+.|+||||++|+||..|..... ..+| --.
T Consensus 15 pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred chhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 456789999888877544332 33458999999999999999999998753210 0000 000
Q ss_pred -ccc-------------------ccchhhhchHHHHH------HHHHH---------HHHhcCCcEEEEcCCCCcCcccC
Q 001066 757 -KGA-------------------DCLGKYVGDAERQL------RLLFQ---------VAEKCQPSIIFFDEIDGLAPCRT 801 (1167)
Q Consensus 757 -~~~-------------------~lls~~~g~~e~~L------~~lF~---------~A~~~~psILfIDEID~L~~~~~ 801 (1167)
.|. .++..-.+..+.++ ..+++ ...+....||||||+..|..
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d--- 158 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD--- 158 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH---
Confidence 000 01111122222211 11111 11122447999999998875
Q ss_pred cccccchHHHHHHHHHHhhc-----------ccCCCceEEEccCCCCC-cCCcccCCCCCcccccccCCC-CHHHHHHHH
Q 001066 802 RQQDQTHSSVVSTLLALMDG-----------LKSRGSVVVIGATNRPE-AVDPALRRPGRFDREIYFPLP-SMEDRAAIL 868 (1167)
Q Consensus 802 ~~~~~~~~~vl~~LL~lLd~-----------l~~~~~ViVIaTTN~~d-~Ld~aLlrpgRF~~~I~~~~P-~~eER~eIL 868 (1167)
.++..||+.+.. +....++++|||+|.-+ .|-+.|+. ||...|.+..| +.++|.+|+
T Consensus 159 --------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii 228 (423)
T COG1239 159 --------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEII 228 (423)
T ss_pred --------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHH
Confidence 788889888765 12334799999999854 68888998 99999988655 889999999
Q ss_pred HHhhccCCCCCChhHHHHHHH
Q 001066 869 SLHTERWPKPVTGSLLKWIAA 889 (1167)
Q Consensus 869 ~~~l~~~~~~l~d~~L~~LA~ 889 (1167)
...+.. . ..++..++.++.
T Consensus 229 ~r~~~f-~-~~Pe~f~~~~~~ 247 (423)
T COG1239 229 RRRLAF-E-AVPEAFLEKYAD 247 (423)
T ss_pred HHHHHh-h-cCcHHHHHHHHH
Confidence 887764 2 234445555544
No 219
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.75 E-value=8.4e-09 Score=122.74 Aligned_cols=64 Identities=23% Similarity=0.328 Sum_probs=55.0
Q ss_pred hhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1094 LLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1094 ~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
++...+..+++ ++|||||||||||+||++||+.+ ..+|++|++++|+++|+|++++.|+.+|..
T Consensus 208 ~~~~~gi~~p~----gVLL~GPPGTGKT~LAraIA~el--~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~ 271 (438)
T PTZ00361 208 LYDDIGIKPPK----GVILYGPPGTGKTLLAKAVANET--SATFLRVVGSELIQKYLGDGPKLVRELFRV 271 (438)
T ss_pred HHHhcCCCCCc----EEEEECCCCCCHHHHHHHHHHhh--CCCEEEEecchhhhhhcchHHHHHHHHHHH
Confidence 33444544444 39999999999999999999999 389999999999999999999999999974
No 220
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.1e-07 Score=109.41 Aligned_cols=97 Identities=32% Similarity=0.500 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc-hhhhchH-HHHHHHHHHHHH----hcCCcEEEEcCC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL-GKYVGDA-ERQLRLLFQVAE----KCQPSIIFFDEI 793 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll-s~~~g~~-e~~L~~lF~~A~----~~~psILfIDEI 793 (1167)
..+|||.||+|+|||.||+.||+-+. ++|...+|..+. ..|+|+- +..|..++..|. +.+..|+||||+
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ld-----VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLD-----VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhC-----CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehh
Confidence 46799999999999999999999887 888888888776 4577764 556777776653 467899999999
Q ss_pred CCcCcccCcc---cccchHHHHHHHHHHhhc
Q 001066 794 DGLAPCRTRQ---QDQTHSSVVSTLLALMDG 821 (1167)
Q Consensus 794 D~L~~~~~~~---~~~~~~~vl~~LL~lLd~ 821 (1167)
|.|..+.... -+-...-+++.||.++++
T Consensus 301 DKi~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 301 DKITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred hhhcccCccccccccccchhHHHHHHHHhcc
Confidence 9998433221 133456799999999986
No 221
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=8.4e-08 Score=107.56 Aligned_cols=85 Identities=28% Similarity=0.423 Sum_probs=66.6
Q ss_pred cCCcEEEEcCCCCcCcccCccc-ccchHHHHHHHHHHhhccc--------CCCceEEEccC----CCCCcCCcccCCCCC
Q 001066 783 CQPSIIFFDEIDGLAPCRTRQQ-DQTHSSVVSTLLALMDGLK--------SRGSVVVIGAT----NRPEAVDPALRRPGR 849 (1167)
Q Consensus 783 ~~psILfIDEID~L~~~~~~~~-~~~~~~vl~~LL~lLd~l~--------~~~~ViVIaTT----N~~d~Ld~aLlrpgR 849 (1167)
.+.+||||||||.++.+...++ +....-++..||.++++-. ....++|||+. ..|.+|-|.|.- |
T Consensus 249 E~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--R 326 (444)
T COG1220 249 EQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--R 326 (444)
T ss_pred HhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--C
Confidence 3568999999999987654333 4445678888999998742 24569999886 457788888864 9
Q ss_pred cccccccCCCCHHHHHHHHH
Q 001066 850 FDREIYFPLPSMEDRAAILS 869 (1167)
Q Consensus 850 F~~~I~~~~P~~eER~eIL~ 869 (1167)
|+..+++...+.++-..||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999999999985
No 222
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.74 E-value=2.8e-08 Score=104.48 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhh-cCCCceEEEEecccccchhhhchHHHHHHHHHH----HHHhcCCcEEEEcCC
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCA-RGDKRIAYFARKGADCLGKYVGDAERQLRLLFQ----VAEKCQPSIIFFDEI 793 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~-~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~----~A~~~~psILfIDEI 793 (1167)
|..++||.||+|||||.+|++||..+. .. ..+++.+++..+... .+....+..++. ........|||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~--~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi 77 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGS--ERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEI 77 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SS--CCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCC--ccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence 345799999999999999999999987 22 237777777766540 000111111111 111222359999999
Q ss_pred CCcCcccCcccccchHHHHHHHHHHhhcc---------cCCCceEEEccCCCCC
Q 001066 794 DGLAPCRTRQQDQTHSSVVSTLLALMDGL---------KSRGSVVVIGATNRPE 838 (1167)
Q Consensus 794 D~L~~~~~~~~~~~~~~vl~~LL~lLd~l---------~~~~~ViVIaTTN~~d 838 (1167)
|.+.+..+...+.....+++.||.+|+.- -...+++||+|+|.-.
T Consensus 78 dKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 78 DKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99987533344455568899999999752 1224689999998643
No 223
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.73 E-value=9.8e-08 Score=116.48 Aligned_cols=165 Identities=16% Similarity=0.212 Sum_probs=101.1
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe---cccccchh
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR---KGADCLGK 764 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l---~~~~lls~ 764 (1167)
|.|.+.++..+.-.+.-... +..-....+....+|||+|+||||||++|++++..+.+. .|... ++..+...
T Consensus 205 i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~----~~~~~~~~~~~~l~~~ 279 (509)
T smart00350 205 IYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA----VYTTGKGSSAVGLTAA 279 (509)
T ss_pred ccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc----eEcCCCCCCcCCcccc
Confidence 58899888777655533211 000011122334589999999999999999999876432 23321 11111111
Q ss_pred hhchH---HHHH-HHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-----------CCCceE
Q 001066 765 YVGDA---ERQL-RLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-----------SRGSVV 829 (1167)
Q Consensus 765 ~~g~~---e~~L-~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-----------~~~~Vi 829 (1167)
...+. +..+ ...+. ....++|+||||+.+.. ..+..|+..|+.-. -..++.
T Consensus 280 ~~~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~~-----------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 280 VTRDPETREFTLEGGALV---LADNGVCCIDEFDKMDD-----------SDRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred ceEccCcceEEecCccEE---ecCCCEEEEechhhCCH-----------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 00000 0000 00111 23468999999999875 56677888886421 124688
Q ss_pred EEccCCCCC-------------cCCcccCCCCCccccc-ccCCCCHHHHHHHHHHhhc
Q 001066 830 VIGATNRPE-------------AVDPALRRPGRFDREI-YFPLPSMEDRAAILSLHTE 873 (1167)
Q Consensus 830 VIaTTN~~d-------------~Ld~aLlrpgRF~~~I-~~~~P~~eER~eIL~~~l~ 873 (1167)
||||+|... .|++++++ ||+..+ .+..|+.+...+|++..+.
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999999752 58899999 997765 4478999999999987653
No 224
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.71 E-value=1.8e-07 Score=115.90 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=90.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHH--HHHH-H--HHH--HHHhcCCcEEEEcC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAE--RQLR-L--LFQ--VAEKCQPSIIFFDE 792 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e--~~L~-~--lF~--~A~~~~psILfIDE 792 (1167)
..+|||.|+||||||++|++|+..+... .+|+.+.........+|... ..+. . .|. .......++|||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~---~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPI---MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcC---CCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccc
Confidence 3579999999999999999999877532 23444432211222233210 0000 0 000 00112447999999
Q ss_pred CCCcCcccCcccccchHHHHHHHHHHhhccc-----------CCCceEEEccCCCCC---cCCcccCCCCCcccccccC-
Q 001066 793 IDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-----------SRGSVVVIGATNRPE---AVDPALRRPGRFDREIYFP- 857 (1167)
Q Consensus 793 ID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-----------~~~~ViVIaTTN~~d---~Ld~aLlrpgRF~~~I~~~- 857 (1167)
|+.+.+ .++..|+..|+.-. ....+.||+|+|..+ .+.++|+. ||...|.+.
T Consensus 93 i~rl~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~ 159 (589)
T TIGR02031 93 ANLLDD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLED 159 (589)
T ss_pred hhhCCH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCC
Confidence 999976 77888888886421 123589999988765 68888988 998877665
Q ss_pred CCCHHHHHHHHHHhh
Q 001066 858 LPSMEDRAAILSLHT 872 (1167)
Q Consensus 858 ~P~~eER~eIL~~~l 872 (1167)
.|+.++|.+|++..+
T Consensus 160 ~~~~~er~eil~~~~ 174 (589)
T TIGR02031 160 VASQDLRVEIVRRER 174 (589)
T ss_pred CCCHHHHHHHHHHHH
Confidence 467788899987755
No 225
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=3.1e-07 Score=105.72 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=103.3
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-------------------ceEEEEecccccchhhhchHHHHHHHHHH
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDK-------------------RIAYFARKGADCLGKYVGDAERQLRLLFQ 778 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~-------------------~i~~~~l~~~~lls~~~g~~e~~L~~lF~ 778 (1167)
..+..+||+||+|+||+++|+++|+.+-.... .-.++.+...+ ++.+ ....++.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHH
Confidence 34568999999999999999999998754221 01122221100 1111 1234444444
Q ss_pred HHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCccccc
Q 001066 779 VAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREI 854 (1167)
Q Consensus 779 ~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I 854 (1167)
.+. .....|++||++|.+.. ...+.||..|+. +..++++|.+|+.++.|.+.++| |+ +.+
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~ 161 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTW 161 (325)
T ss_pred HHhhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEE
Confidence 433 33456999999999875 667889999986 44567778889999999999998 98 889
Q ss_pred ccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHH
Q 001066 855 YFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGA 897 (1167)
Q Consensus 855 ~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~a 897 (1167)
.|++|+.++..+.|...... ....+..++..+.|-...
T Consensus 162 ~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSSA-----EISEILTALRINYGRPLL 199 (325)
T ss_pred eCCCCCHHHHHHHHHHHhcc-----ChHHHHHHHHHcCCCHHH
Confidence 99999999998888765321 222344455555554433
No 226
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.2e-08 Score=123.55 Aligned_cols=68 Identities=25% Similarity=0.309 Sum_probs=62.9
Q ss_pred chhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1091 NCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1091 ~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
+...+.+.|+.+++| +||+||||||||+||||+|.+- | +.||++-+||.+-||.|--=.+||.+|+..
T Consensus 332 NP~~Y~~lGAKiPkG----vLL~GPPGTGKTLLAKAiAGEA-g-VPF~svSGSEFvE~~~g~~asrvr~lf~~a 399 (774)
T KOG0731|consen 332 NPEQYQELGAKIPKG----VLLVGPPGTGKTLLAKAIAGEA-G-VPFFSVSGSEFVEMFVGVGASRVRDLFPLA 399 (774)
T ss_pred CHHHHHHcCCcCcCc----eEEECCCCCcHHHHHHHHhccc-C-CceeeechHHHHHHhcccchHHHHHHHHHh
Confidence 566778889999998 9999999999999999999988 4 999999999999999999999999999864
No 227
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.69 E-value=7.2e-08 Score=103.67 Aligned_cols=187 Identities=22% Similarity=0.286 Sum_probs=102.1
Q ss_pred cChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe-ccc------cc
Q 001066 689 AGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR-KGA------DC 761 (1167)
Q Consensus 689 ~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l-~~~------~l 761 (1167)
+|.+...+.|.+++.. .+...++|+||.|+|||+|++.+...+........++.. ... .+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 5778888888776643 235679999999999999999999887432111111111 000 00
Q ss_pred -------------chh-------------hhchHHHHHHHHHHHHHhc-CCcEEEEcCCCCcC-cccCcccccchHHHHH
Q 001066 762 -------------LGK-------------YVGDAERQLRLLFQVAEKC-QPSIIFFDEIDGLA-PCRTRQQDQTHSSVVS 813 (1167)
Q Consensus 762 -------------ls~-------------~~g~~e~~L~~lF~~A~~~-~psILfIDEID~L~-~~~~~~~~~~~~~vl~ 813 (1167)
+.. ........+..++...... ...||+|||++.+. .. .....++.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~------~~~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS------EEDKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT------TTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc------cchHHHHH
Confidence 000 0011234456666665543 34899999999987 21 12236667
Q ss_pred HHHHHhhcccCCCceEEEccCCCCC---c---CCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCC--ChhHHH
Q 001066 814 TLLALMDGLKSRGSVVVIGATNRPE---A---VDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPV--TGSLLK 885 (1167)
Q Consensus 814 ~LL~lLd~l~~~~~ViVIaTTN~~d---~---Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l--~d~~L~ 885 (1167)
.|..+++......++.+|.++.... . -...+.. |+.. +.+++.+.++..+++...+... ..+ ++..+.
T Consensus 143 ~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~ 218 (234)
T PF01637_consen 143 SLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIE 218 (234)
T ss_dssp HHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HHHHH
T ss_pred HHHHHHhhccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHH
Confidence 7777777654455544444433221 1 1223333 7755 9999999999999999987766 433 788888
Q ss_pred HHHHHccCCcHHHH
Q 001066 886 WIAARTAGFAGADL 899 (1167)
Q Consensus 886 ~LA~~t~G~s~aDL 899 (1167)
.+...+.| .|.-|
T Consensus 219 ~i~~~~gG-~P~~l 231 (234)
T PF01637_consen 219 EIYSLTGG-NPRYL 231 (234)
T ss_dssp HHHHHHTT--HHHH
T ss_pred HHHHHhCC-CHHHH
Confidence 88888877 44444
No 228
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.68 E-value=2.7e-07 Score=116.91 Aligned_cols=131 Identities=23% Similarity=0.313 Sum_probs=94.9
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec------ccccchhhhch-------HHHHHHHHHHHHHhcCC
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK------GADCLGKYVGD-------AERQLRLLFQVAEKCQP 785 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~------~~~lls~~~g~-------~e~~L~~lF~~A~~~~p 785 (1167)
...++||.||+.+|||+++..+|...+. .|+.++ ..+.++.|+.+ .+..+-.+++..+|
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tgh-----kfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyW--- 958 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGH-----KFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYW--- 958 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCc-----cEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcE---
Confidence 3467999999999999999999999984 444443 23334444332 23344445554445
Q ss_pred cEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc------------ccCCCceEEEccCCCCC------cCCcccCCC
Q 001066 786 SIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG------------LKSRGSVVVIGATNRPE------AVDPALRRP 847 (1167)
Q Consensus 786 sILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~------------l~~~~~ViVIaTTN~~d------~Ld~aLlrp 847 (1167)
|+|||+..... .++.+|-++|+. +.+.+.++++||-|+|. -|..|++.
T Consensus 959 --IVLDELNLApT-----------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN- 1024 (4600)
T COG5271 959 --IVLDELNLAPT-----------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN- 1024 (4600)
T ss_pred --EEeeccccCcH-----------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh-
Confidence 99999986553 677888888875 24567789998889875 36778887
Q ss_pred CCcccccccCCCCHHHHHHHHHHhhc
Q 001066 848 GRFDREIYFPLPSMEDRAAILSLHTE 873 (1167)
Q Consensus 848 gRF~~~I~~~~P~~eER~eIL~~~l~ 873 (1167)
|| ..++|..-..++...||+..+.
T Consensus 1025 -RF-lE~hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1025 -RF-LEMHFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred -hh-HhhhcccCcHHHHHHHHhccCc
Confidence 99 7899998889999999987664
No 229
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.68 E-value=4.5e-08 Score=117.20 Aligned_cols=192 Identities=22% Similarity=0.241 Sum_probs=121.3
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY 765 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~ 765 (1167)
..++|....++.+.+.+... .....+++|+|++||||+++|+++....... ..+|+.++|..+....
T Consensus 139 ~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRK--DKRFVAINCAAIPENL 205 (445)
T ss_pred cceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcC--CCCeEEEECCCCChHH
Confidence 34666666666666554321 1334679999999999999999998766532 3467788777653221
Q ss_pred hchHHHHHHHHHH---------------HHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--C----
Q 001066 766 VGDAERQLRLLFQ---------------VAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--S---- 824 (1167)
Q Consensus 766 ~g~~e~~L~~lF~---------------~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~---- 824 (1167)
+. ..+|. .......++||||||+.|.. .++..|+..|+.-. .
T Consensus 206 ~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~-----------~~q~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 206 LE------SELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL-----------NLQAKLLRFLQERVIERLGGR 268 (445)
T ss_pred HH------HHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH-----------HHHHHHHHHHhhCeEEeCCCC
Confidence 11 11111 01123468999999999986 67778888886421 1
Q ss_pred ---CCceEEEccCCCCC-------cCCcccCCCCCcccccccCCCCHHHHHH----HHHHhhc----cCC---CCCChhH
Q 001066 825 ---RGSVVVIGATNRPE-------AVDPALRRPGRFDREIYFPLPSMEDRAA----ILSLHTE----RWP---KPVTGSL 883 (1167)
Q Consensus 825 ---~~~ViVIaTTN~~d-------~Ld~aLlrpgRF~~~I~~~~P~~eER~e----IL~~~l~----~~~---~~l~d~~ 883 (1167)
...+.||+||+..- .+.+.|.. |+ ..+.+..|...+|.+ +++.++. .++ ..+++..
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a 345 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDA 345 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 12578888887642 12222322 44 345666777777765 2233322 222 3467888
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 884 LKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 884 L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
+..|..+..-.+.++|++++.+|...+
T Consensus 346 ~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 346 LRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 999988887788999999999887654
No 230
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=3e-07 Score=106.47 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=106.7
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC---------------------CceEEEEecccccchhhhchHHHHHHHH
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGD---------------------KRIAYFARKGADCLGKYVGDAERQLRLL 776 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~---------------------~~i~~~~l~~~~lls~~~g~~e~~L~~l 776 (1167)
..+..+||+||+|+||+++|.++|..+-... ..+.++.-.... ..-.+.+.......+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~-~~I~idqiR~l~~~~ 100 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK-SSLGVDAVREVTEKL 100 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc-ccCCHHHHHHHHHHH
Confidence 4467899999999999999999999875421 112222111100 001122223333333
Q ss_pred HHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCccccccc
Q 001066 777 FQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYF 856 (1167)
Q Consensus 777 F~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~ 856 (1167)
..........|++||++|.+.. ...+.||..|+. +.+++++|.+|+.++.|.+.++| |+ +.+.|
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RC-q~~~~ 164 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RC-RLHYL 164 (334)
T ss_pred hhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-ccccC
Confidence 3333344567999999999875 667889999986 44567888899999999999999 99 68899
Q ss_pred CCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 857 PLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 857 ~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
++|+.++..+.|.... + .+......++..+.|-....+
T Consensus 165 ~~~~~~~~~~~L~~~~---~--~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 165 APPPEQYALTWLSREV---T--MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CCCCHHHHHHHHHHcc---C--CCHHHHHHHHHHcCCCHHHHH
Confidence 9999998888776431 2 344445566777777555444
No 231
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.66 E-value=5.1e-08 Score=101.56 Aligned_cols=139 Identities=22% Similarity=0.325 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc------------------e
Q 001066 690 GLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR------------------I 751 (1167)
Q Consensus 690 Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~------------------i 751 (1167)
|++++++.|..++.. + ..+..+||+||+|+||+++|.++|..+...... .
T Consensus 1 gq~~~~~~L~~~~~~-----------~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------G-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------T-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc-----------C-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 677888888887754 1 445679999999999999999999987543211 1
Q ss_pred EEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCc
Q 001066 752 AYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGS 827 (1167)
Q Consensus 752 ~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ 827 (1167)
.++.+....... .-....++.+...+.. ...-|++||++|.|.. ..++.||..|+... .+
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LEepp--~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-----------EAQNALLKTLEEPP--EN 132 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHHSTT--TT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-----------HHHHHHHHHhcCCC--CC
Confidence 222222211100 0012344444444332 3456999999999875 77889999999654 56
Q ss_pred eEEEccCCCCCcCCcccCCCCCcccccccCCC
Q 001066 828 VVVIGATNRPEAVDPALRRPGRFDREIYFPLP 859 (1167)
Q Consensus 828 ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P 859 (1167)
+++|.+|+.++.|.+.+++ |+ ..|.|+++
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 7888899999999999999 88 77777654
No 232
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.65 E-value=2.4e-08 Score=121.47 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=51.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+++ + ++|+.++++++.++|.|+++++++++|...
T Consensus 90 giLL~GppGtGKT~la~alA~~~-~-~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a 143 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEA-G-VPFFSISGSDFVEMFVGVGASRVRDLFEQA 143 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc-C-CCeeeccHHHHHHHHhcccHHHHHHHHHHH
Confidence 39999999999999999999999 3 999999999999999999999999999864
No 233
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.64 E-value=1.7e-07 Score=98.41 Aligned_cols=123 Identities=24% Similarity=0.379 Sum_probs=77.9
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchh---
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGK--- 764 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~--- 764 (1167)
|+|....++.+.+.+... ...+.+|||+|++||||+.+|++|.....+ ..-+|+.++|..+...
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~~~~~~~e 67 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAALPEELLE 67 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTTS-HHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhhhhcchhh
Confidence 456666677776665442 134578999999999999999999886543 2358889988765322
Q ss_pred --hhchHH-------HHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc--cC-------CC
Q 001066 765 --YVGDAE-------RQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL--KS-------RG 826 (1167)
Q Consensus 765 --~~g~~e-------~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l--~~-------~~ 826 (1167)
.+|... .....+|..| ..++||||||+.|.. .++..|+.+|+.- .. .-
T Consensus 68 ~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~Ld~I~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 68 SELFGHEKGAFTGARSDKKGLLEQA---NGGTLFLDEIEDLPP-----------ELQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEEETGGGS-H-----------HHHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hhhhccccccccccccccCCceeec---cceEEeecchhhhHH-----------HHHHHHHHHHhhchhccccccccccc
Confidence 122110 0012455554 458999999999986 7888899998742 11 12
Q ss_pred ceEEEccCCCC
Q 001066 827 SVVVIGATNRP 837 (1167)
Q Consensus 827 ~ViVIaTTN~~ 837 (1167)
++.||+||+.+
T Consensus 134 ~~RiI~st~~~ 144 (168)
T PF00158_consen 134 DVRIIASTSKD 144 (168)
T ss_dssp -EEEEEEESS-
T ss_pred cceEEeecCcC
Confidence 58899999863
No 234
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.63 E-value=5.3e-09 Score=104.01 Aligned_cols=109 Identities=35% Similarity=0.418 Sum_probs=60.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEE-ecccccchhhhchHHH-----HHHHHHHHHHhcCCcEEEEcCCCC
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFA-RKGADCLGKYVGDAER-----QLRLLFQVAEKCQPSIIFFDEIDG 795 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~-l~~~~lls~~~g~~e~-----~L~~lF~~A~~~~psILfIDEID~ 795 (1167)
+|||.|+||+|||++|+++|..++....++.+.. +...++++..+-+... .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 5899999999999999999999986544443321 1122222221111100 001111 25999999998
Q ss_pred cCcccCcccccchHHHHHHHHHHhhcc---------cCCCceEEEccCCCCC-----cCCcccCCCCCc
Q 001066 796 LAPCRTRQQDQTHSSVVSTLLALMDGL---------KSRGSVVVIGATNRPE-----AVDPALRRPGRF 850 (1167)
Q Consensus 796 L~~~~~~~~~~~~~~vl~~LL~lLd~l---------~~~~~ViVIaTTN~~d-----~Ld~aLlrpgRF 850 (1167)
..+ ++++.|+..|... .-...++||||.|..+ .|+.+++. ||
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 876 7889999999753 2234589999999865 56777776 76
No 235
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=5.6e-07 Score=103.40 Aligned_cols=175 Identities=18% Similarity=0.174 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc----------------eEEE
Q 001066 691 LQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR----------------IAYF 754 (1167)
Q Consensus 691 le~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~----------------i~~~ 754 (1167)
+..+.+.+...+.. + ..+..+||+||+|+||+++|.++|..+...... -.++
T Consensus 9 ~~~~~~~l~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDA-----------G-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHc-----------C-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 34455666655543 1 345679999999999999999999887542210 0122
Q ss_pred Eec-ccccch-h-hhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCc
Q 001066 755 ARK-GADCLG-K-YVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGS 827 (1167)
Q Consensus 755 ~l~-~~~lls-~-~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ 827 (1167)
.+. .++-.+ + ...-....++.+.+.+.. ....|++||++|.+.. ...+.||..|+... .+
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp--~~ 143 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPS--PG 143 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCC--CC
Confidence 111 000000 0 000113345555554443 2346999999999875 66778999998643 45
Q ss_pred eEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 828 VVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 828 ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
++||.+|+.++.|.|.++| |+ +.|.|+.|+.++..+.|... + ++......++..+.|.....+
T Consensus 144 ~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~--~~~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 144 RYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----G--VSERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----C--CChHHHHHHHHHcCCCHHHHH
Confidence 6677788889999999999 99 88999999999888887642 1 233444556666666544443
No 236
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.59 E-value=9.1e-07 Score=97.30 Aligned_cols=187 Identities=18% Similarity=0.188 Sum_probs=129.9
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC---Cce---------
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD---KRI--------- 751 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~---~~i--------- 751 (1167)
+|+.+.+.++....++.+... ..-.++|+|||+|+||-|.+.+|.+++.... .++
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 566677888887777766431 1235899999999999999999999876421 111
Q ss_pred ----EEEEecccccch---hhhch-HHHHHHHHHHHHHhc---------CCcEEEEcCCCCcCcccCcccccchHHHHHH
Q 001066 752 ----AYFARKGADCLG---KYVGD-AERQLRLLFQVAEKC---------QPSIIFFDEIDGLAPCRTRQQDQTHSSVVST 814 (1167)
Q Consensus 752 ----~~~~l~~~~lls---~~~g~-~e~~L~~lF~~A~~~---------~psILfIDEID~L~~~~~~~~~~~~~~vl~~ 814 (1167)
.+..+.....+. .-.|. ....+..++.+..+. .-.+++|-|.|.|.. ..+.+
T Consensus 78 ~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~-----------dAQ~a 146 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR-----------DAQHA 146 (351)
T ss_pred CceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-----------HHHHH
Confidence 111111111110 00111 122344444443332 235899999999875 67778
Q ss_pred HHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCC
Q 001066 815 LLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGF 894 (1167)
Q Consensus 815 LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~ 894 (1167)
|.+-|+.+..+ +.+|..+|....+-+++++ |+ ..|.+|.|+.++...+|...+.+.+..++...+..||+.+.|-
T Consensus 147 LRRTMEkYs~~--~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 147 LRRTMEKYSSN--CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRN 221 (351)
T ss_pred HHHHHHHHhcC--ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhccc
Confidence 88999987655 4555577877788888988 87 7899999999999999999999988888888999999998876
Q ss_pred cHHHH
Q 001066 895 AGADL 899 (1167)
Q Consensus 895 s~aDL 899 (1167)
...+|
T Consensus 222 LRrAl 226 (351)
T KOG2035|consen 222 LRRAL 226 (351)
T ss_pred HHHHH
Confidence 55554
No 237
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.59 E-value=1.5e-07 Score=114.01 Aligned_cols=177 Identities=19% Similarity=0.256 Sum_probs=104.4
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR------------ 750 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~------------ 750 (1167)
..|++|.|...+++.+.-.+ ....+++|+||||+|||++++.++..+......
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 37899999998877665433 234689999999999999999998754321111
Q ss_pred -----------eEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 751 -----------IAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 751 -----------i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
.+|............+|.........+.. ...++||||||+.+.. .++..|+..|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~l---A~~GvLfLDEi~e~~~-----------~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISL---AHNGVLFLDELPEFKR-----------SVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhc---cCCCeEecCChhhCCH-----------HHHHHHHHHH
Confidence 01111111100000111100000112222 3558999999998764 7777888888
Q ss_pred hccc-----------CCCceEEEccCCCC------C-----------------cCCcccCCCCCcccccccCCCCHHHHH
Q 001066 820 DGLK-----------SRGSVVVIGATNRP------E-----------------AVDPALRRPGRFDREIYFPLPSMEDRA 865 (1167)
Q Consensus 820 d~l~-----------~~~~ViVIaTTN~~------d-----------------~Ld~aLlrpgRF~~~I~~~~P~~eER~ 865 (1167)
+.-. ...++.+|+++|.- + .+...|+. ||+..+.++.++..+.
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l- 396 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL- 396 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH-
Confidence 6421 12468999999852 1 35666776 7877777776654421
Q ss_pred HHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 001066 866 AILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR 913 (1167)
Q Consensus 866 eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R 913 (1167)
.....+.+-+.++.-+..|......|
T Consensus 397 ----------------------~~~~~~e~s~~ir~rV~~Ar~~q~~R 422 (499)
T TIGR00368 397 ----------------------LSTGSGESSAEVKQRVIKAREIQNIR 422 (499)
T ss_pred ----------------------hccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 11122345666777777776665554
No 238
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.59 E-value=1.4e-06 Score=98.37 Aligned_cols=202 Identities=18% Similarity=0.264 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC----CCceEEEEeccccc------
Q 001066 692 QDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG----DKRIAYFARKGADC------ 761 (1167)
Q Consensus 692 e~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~----~~~i~~~~l~~~~l------ 761 (1167)
.++.+.|.+++..| ......++||+|++|.|||+|++.++..-... ...++++.+..+.-
T Consensus 43 ~~~L~~L~~Ll~~P----------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 43 KEALDRLEELLEYP----------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred HHHHHHHHHHHhCC----------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 44555555665554 22445689999999999999999998754321 12345555433211
Q ss_pred chh--------h--hchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCc--eE
Q 001066 762 LGK--------Y--VGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGS--VV 829 (1167)
Q Consensus 762 ls~--------~--~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~--Vi 829 (1167)
... + ..........++...+..++-+|+|||||.+.... .+-+..+++.|+.+...-. ++
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs--------~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS--------YRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc--------HHHHHHHHHHHHHHhhccCCCeE
Confidence 100 0 11122233445566677788999999999976411 1334566677766644433 55
Q ss_pred EEccCCCCCc--CCcccCCCCCcccccccCCC-CHHHHHHHHHHhhccCCC----CCCh-hHHHHHHHHccCCcHHHHHH
Q 001066 830 VIGATNRPEA--VDPALRRPGRFDREIYFPLP-SMEDRAAILSLHTERWPK----PVTG-SLLKWIAARTAGFAGADLQA 901 (1167)
Q Consensus 830 VIaTTN~~d~--Ld~aLlrpgRF~~~I~~~~P-~~eER~eIL~~~l~~~~~----~l~d-~~L~~LA~~t~G~s~aDL~~ 901 (1167)
.+||...... -|+.|.+ || ..+.+|.- ..++...+|..+-..+++ .+.. .....|-..+.|.+ ++|..
T Consensus 185 ~vGt~~A~~al~~D~QLa~--RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ 260 (302)
T PF05621_consen 185 GVGTREAYRALRTDPQLAS--RF-EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSR 260 (302)
T ss_pred EeccHHHHHHhccCHHHHh--cc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHH
Confidence 5555433332 3678887 99 56666653 233445555554433322 2333 34467778888755 46889
Q ss_pred HHHHHHHHHHHcCC
Q 001066 902 LCTQAAIIALKRNF 915 (1167)
Q Consensus 902 Lv~~A~~~A~~R~i 915 (1167)
|+..|+..|++.+.
T Consensus 261 ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 261 LLNAAAIAAIRSGE 274 (302)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998774
No 239
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.58 E-value=7.2e-08 Score=107.81 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=49.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcc--c---ceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFI--G---NVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~--G---~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
.+.+|||||||||||++|++||+.|. | .-+++.++.+.++.+|+|+++++++.+|.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~ 103 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKK 103 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHh
Confidence 44599999999999999999998752 1 137889999999999999999999999976
No 240
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=5.9e-07 Score=104.80 Aligned_cols=205 Identities=21% Similarity=0.274 Sum_probs=133.4
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc----
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL---- 762 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll---- 762 (1167)
.+.|.+..+..+++++..++ ....+.++++.|.||||||.+...+...+......+..+++++..+.
T Consensus 151 ~l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 36899999999999987753 34667889999999999999999887776655555555666665432
Q ss_pred --hhhhchH---------HHHHHHHHH-HHHhc-CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceE
Q 001066 763 --GKYVGDA---------ERQLRLLFQ-VAEKC-QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVV 829 (1167)
Q Consensus 763 --s~~~g~~---------e~~L~~lF~-~A~~~-~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~Vi 829 (1167)
.+..+.. .......|. ..... .+-||++||+|.|....+ .++.+|+.+-. .+..+++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~--------~vLy~lFewp~--lp~sr~i 291 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ--------TVLYTLFEWPK--LPNSRII 291 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc--------ceeeeehhccc--CCcceee
Confidence 1111111 111222232 22222 367999999999985221 33333332211 3456789
Q ss_pred EEccCCCCCcCCcccCC----CCCcccccccCCCCHHHHHHHHHHhhccCCCC-CChhHHHHHHHHccCCcHHHHH---H
Q 001066 830 VIGATNRPEAVDPALRR----PGRFDREIYFPLPSMEDRAAILSLHTERWPKP-VTGSLLKWIAARTAGFAGADLQ---A 901 (1167)
Q Consensus 830 VIaTTN~~d~Ld~aLlr----pgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~-l~d~~L~~LA~~t~G~s~aDL~---~ 901 (1167)
+||.+|..+.-|..|-+ .+.-...+.|++|+.++..+||+..+...+.. +-+..+..+|+...+-+| |++ .
T Consensus 292 LiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLd 370 (529)
T KOG2227|consen 292 LIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALD 370 (529)
T ss_pred eeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHH
Confidence 99999987754433321 22335788999999999999999998875432 233578888988888665 444 4
Q ss_pred HHHHHHHHHH
Q 001066 902 LCTQAAIIAL 911 (1167)
Q Consensus 902 Lv~~A~~~A~ 911 (1167)
+|++|..++.
T Consensus 371 v~R~aiEI~E 380 (529)
T KOG2227|consen 371 VCRRAIEIAE 380 (529)
T ss_pred HHHHHHHHHH
Confidence 4556665554
No 241
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.57 E-value=1.8e-06 Score=99.96 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=44.0
Q ss_pred cCcc-cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 683 EGFE-SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 683 ~~~d-dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
.-|+ ++.|+++.+.++.+.+.... ..++ ...+.++|+||||+|||+||++||..+..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a------~g~~-~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAA------QGLE-ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHH------hcCC-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3466 89999999999888775532 1111 23467899999999999999999999864
No 242
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.57 E-value=7.3e-08 Score=109.23 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=49.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccce------EEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNV------EIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L------~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
.+||+||||||||++|++||+.+. ++ .|+.++.++|+.+|+|+++.+++++|.++
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~-~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH-RLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH-HcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHc
Confidence 499999999999999999998773 11 69999999999999999999999999875
No 243
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.56 E-value=6.4e-08 Score=113.33 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=54.9
Q ss_pred hhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1095 LQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1095 ~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
+...+..++++ +|||||||||||+||++||+.+ ..+|+++..++++++|+|+++..++++|..+
T Consensus 148 ~~~~g~~~p~g----vLL~GppGtGKT~lakaia~~l--~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a 211 (364)
T TIGR01242 148 FEEVGIEPPKG----VLLYGPPGTGKTLLAKAVAHET--NATFIRVVGSELVRKYIGEGARLVREIFELA 211 (364)
T ss_pred HHhcCCCCCce----EEEECCCCCCHHHHHHHHHHhC--CCCEEecchHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444 9999999999999999999999 3899999999999999999999999999754
No 244
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.55 E-value=6.5e-08 Score=127.07 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=44.5
Q ss_pred hhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhc
Q 001066 1094 LLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1094 ~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ky 1149 (1167)
...+.|+.|++| |||+||||||||+||||||++. + ++||+|.+++++++|
T Consensus 1621 ~slrLGl~pPKG----ILLiGPPGTGKTlLAKALA~es-~-VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1621 FSLRLALSPSRG----ILVIGSIGTGRSYLVKYLATNS-Y-VPFITVFLNKFLDNK 1670 (2281)
T ss_pred HHHHcCCCCCCc----eEEECCCCCCHHHHHHHHHHhc-C-CceEEEEHHHHhhcc
Confidence 336667777776 9999999999999999999999 4 999999999999887
No 245
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.54 E-value=2.6e-07 Score=111.47 Aligned_cols=196 Identities=19% Similarity=0.242 Sum_probs=122.5
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchh
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGK 764 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~ 764 (1167)
+.+++|....++.+.+.+... .....+|||+|++|||||++|++|+..... ...+|+.++|..+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~-----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~i~i~c~~~~~~ 203 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL-----------SRSSISVLINGESGTGKELVAHALHRHSPR--AKAPFIALNMAAIPKD 203 (469)
T ss_pred cccceecCHHHHHHHHHHHHH-----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCC--CCCCeEeeeCCCCCHH
Confidence 456788777777776655321 134567999999999999999999886543 2357888888765321
Q ss_pred hh-----chHHHH-------HHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--C------
Q 001066 765 YV-----GDAERQ-------LRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--S------ 824 (1167)
Q Consensus 765 ~~-----g~~e~~-------L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~------ 824 (1167)
.. |..... ....|. ....+.||||||+.|.. .++..|+..|+... .
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l~~-----------~~q~~L~~~l~~~~~~~~~~~~~ 269 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDMPL-----------DVQTRLLRVLADGQFYRVGGYAP 269 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccCCH-----------HHHHHHHHHHhcCcEEeCCCCCe
Confidence 11 100000 001122 22457899999999986 66778888886421 1
Q ss_pred -CCceEEEccCCCCC-------cCCcccCCCCCcccccccCCCCHHHHHH----HHHHhhcc----CC---CCCChhHHH
Q 001066 825 -RGSVVVIGATNRPE-------AVDPALRRPGRFDREIYFPLPSMEDRAA----ILSLHTER----WP---KPVTGSLLK 885 (1167)
Q Consensus 825 -~~~ViVIaTTN~~d-------~Ld~aLlrpgRF~~~I~~~~P~~eER~e----IL~~~l~~----~~---~~l~d~~L~ 885 (1167)
...+.||+||+..- .+.+.|.. || ..+.+..|...+|.+ ++..++.. ++ ..+++..+.
T Consensus 270 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 346 (469)
T PRK10923 270 VKVDVRIIAATHQNLEQRVQEGKFREDLFH--RL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA 346 (469)
T ss_pred EEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 12467888887531 22334443 44 234555566555544 44444332 22 236778899
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 886 WIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 886 ~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
.|..+..-.+-++|+++++++...+
T Consensus 347 ~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 347 ALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC
Confidence 9999888889999999999887654
No 246
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=2.8e-07 Score=106.73 Aligned_cols=138 Identities=20% Similarity=0.249 Sum_probs=95.7
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC---c-----------------eEEEEeccccc----------------
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDK---R-----------------IAYFARKGADC---------------- 761 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~---~-----------------i~~~~l~~~~l---------------- 761 (1167)
..+..+||+||+|+||+++|+++|+.+..... . -.++.+.....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 45678999999999999999999998765321 0 01111111000
Q ss_pred --chh----h-hchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEE
Q 001066 762 --LGK----Y-VGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVV 830 (1167)
Q Consensus 762 --ls~----~-~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViV 830 (1167)
.++ . ..-.-..++.+...+.. ....|++||++|.+.. ...+.||..|+. +..++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEE--Pp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEE--PPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcC--CCcCcEE
Confidence 000 0 00012344555444332 3456999999999975 667789999985 4556788
Q ss_pred EccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHh
Q 001066 831 IGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLH 871 (1167)
Q Consensus 831 IaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~ 871 (1167)
|.+|+.++.|.|.++| |+ +.|.|++|+.++..+.|...
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8899999999999999 99 89999999999999888764
No 247
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.53 E-value=1.4e-06 Score=96.14 Aligned_cols=110 Identities=24% Similarity=0.242 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC-------------CCcCCcccCCCCCc
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR-------------PEAVDPALRRPGRF 850 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~-------------~d~Ld~aLlrpgRF 850 (1167)
-|.||||||+|.|-- ....-|...|+. .-.-+||.+||+ |.-+++.|+. |+
T Consensus 296 vPGVLFIDEVhMLDi-----------EcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl 359 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDI-----------ECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL 359 (456)
T ss_pred cCcceEeeehhhhhh-----------HHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he
Confidence 378888888887753 333334444442 222245555554 4456777877 77
Q ss_pred ccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 851 DREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 851 ~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
.+|..-+++.++..+|++..+...++.+++..+..|+.....-+-+-..+|+.-|...|
T Consensus 360 -~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~a 418 (456)
T KOG1942|consen 360 -LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILA 418 (456)
T ss_pred -eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHH
Confidence 67777888999999999999988888888888888888665444333333433333333
No 248
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.51 E-value=2.2e-06 Score=114.34 Aligned_cols=242 Identities=20% Similarity=0.223 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhhcc-ccChHHHHHhhHHHHHHHhhccCcccCCCCCCCCCccc
Q 001066 605 DQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLENC-GEDEEFLKREGKRLHRDLLRIAPVYIGGSDSDSGKLFE 683 (1167)
Q Consensus 605 ~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~~~-~~d~~~lk~~~~d~~~aL~~v~p~~~~~~~~~~~~~~~ 683 (1167)
..+.+.+++.+.++...++..|..|. ..+.....+.... ..+.+++.....++...|.... ..
T Consensus 118 g~f~~~f~~~~~~~~~~~~~~w~~al--~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~--------------~~ 181 (1153)
T PLN03210 118 GDFGEAFEKTCQNKTEDEKIQWKQAL--TDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTP--------------SN 181 (1153)
T ss_pred chHHHHHHHHhcccchhHHHHHHHHH--HHHhCcCceecCCCCCHHHHHHHHHHHHHHhhcccc--------------Cc
Confidence 34555556666666666677776554 2233322221111 2233456666666666554321 23
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe---c-cc
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR---K-GA 759 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l---~-~~ 759 (1167)
.+++++|++..++.|..++.. .....+-|-|+|++|+||||||+++++.+...+....|+.. . ..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred ccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch
Confidence 567789999999999888743 22334568899999999999999999887654432222211 0 00
Q ss_pred ccch-----hh---hchHHHHHH-------------HHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHH
Q 001066 760 DCLG-----KY---VGDAERQLR-------------LLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLAL 818 (1167)
Q Consensus 760 ~lls-----~~---~g~~e~~L~-------------~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~l 818 (1167)
.... .+ ..-....+. ..++.....++.+|+||+++.. .++..|...
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-------------~~l~~L~~~ 317 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-------------DVLDALAGQ 317 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-------------HHHHHHHhh
Confidence 0000 00 000000011 1112222346789999998742 233333332
Q ss_pred hhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCCh--hHHHHHHHHccC
Q 001066 819 MDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTG--SLLKWIAARTAG 893 (1167)
Q Consensus 819 Ld~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d--~~L~~LA~~t~G 893 (1167)
.+.+ ..+. .||.||..... .+...++..+.++.|+.++..++|..++........+ .....++.++.|
T Consensus 318 ~~~~-~~Gs-rIIiTTrd~~v-----l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~G 387 (1153)
T PLN03210 318 TQWF-GSGS-RIIVITKDKHF-----LRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGN 387 (1153)
T ss_pred CccC-CCCc-EEEEEeCcHHH-----HHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCC
Confidence 2222 2233 34446765432 2212355788999999999999999887543222111 123345555555
No 249
>PRK08116 hypothetical protein; Validated
Probab=98.49 E-value=3e-07 Score=103.40 Aligned_cols=132 Identities=15% Similarity=0.184 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchH----HHHHHHHHHHHHhcCCcEEEEcCCCC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDA----ERQLRLLFQVAEKCQPSIIFFDEIDG 795 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~----e~~L~~lF~~A~~~~psILfIDEID~ 795 (1167)
+.+++|+|++|||||+||.+||+.+.... ..++.++..+++..+.... ......++... ....+|+|||+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~--~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG--VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccC
Confidence 45799999999999999999999986543 4455555555554332211 11122233222 3457999999964
Q ss_pred cCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC-Cc----CCcccCCCCCc---ccccccCCCCHHHHHHH
Q 001066 796 LAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP-EA----VDPALRRPGRF---DREIYFPLPSMEDRAAI 867 (1167)
Q Consensus 796 L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~-d~----Ld~aLlrpgRF---~~~I~~~~P~~eER~eI 867 (1167)
... ....+..|+.+|+.....+..+| .|||.+ .. ++.++.+ |+ ...|.|+-|+. |..+
T Consensus 190 e~~---------t~~~~~~l~~iin~r~~~~~~~I-iTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~--R~~~ 255 (268)
T PRK08116 190 ERD---------TEWAREKVYNIIDSRYRKGLPTI-VTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY--RKEI 255 (268)
T ss_pred CCC---------CHHHHHHHHHHHHHHHHCCCCEE-EECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh--hHHH
Confidence 321 12445677788877654444444 466653 33 3455555 53 23355555553 4444
Q ss_pred HH
Q 001066 868 LS 869 (1167)
Q Consensus 868 L~ 869 (1167)
.+
T Consensus 256 ~~ 257 (268)
T PRK08116 256 AK 257 (268)
T ss_pred HH
Confidence 43
No 250
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=1.1e-06 Score=100.97 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC------------------ceE
Q 001066 691 LQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK------------------RIA 752 (1167)
Q Consensus 691 le~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~------------------~i~ 752 (1167)
+....+.+...+.. + ..+..+||+||.|+||+++|+++|..+-.... .-.
T Consensus 8 l~~~~~~l~~~~~~-----------~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 8 LVPVWQNWKAGLDA-----------G-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD 75 (319)
T ss_pred HHHHHHHHHHHHHc-----------C-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence 34555566655533 1 44568999999999999999999998754321 111
Q ss_pred EEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCce
Q 001066 753 YFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSV 828 (1167)
Q Consensus 753 ~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~V 828 (1167)
|+.+.... .++.+ ....++.+...+. .....|++||++|.+.. ...+.||..|+.. ..++
T Consensus 76 ~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEP--p~~t 139 (319)
T PRK06090 76 LHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEEP--APNC 139 (319)
T ss_pred EEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcCC--CCCe
Confidence 22221110 00111 1233444444333 23457999999999875 6677899999864 4557
Q ss_pred EEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHH
Q 001066 829 VVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSL 870 (1167)
Q Consensus 829 iVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~ 870 (1167)
++|.+|+.++.|.|.++| |+ +.+.|++|+.++..+.|..
T Consensus 140 ~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 140 LFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 888889999999999999 99 7999999999998888764
No 251
>CHL00181 cbbX CbbX; Provisional
Probab=98.47 E-value=1.8e-07 Score=106.12 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=49.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcc--c---ceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFI--G---NVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~--G---~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++.+||+||||||||++|++||+.+. | +-.|+.++.++|+++|+|+++++++++|.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHc
Confidence 44599999999999999999999762 1 1158999999999999999999999999763
No 252
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.47 E-value=3.3e-07 Score=102.65 Aligned_cols=186 Identities=17% Similarity=0.172 Sum_probs=124.1
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-CceEEEEeccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-KRIAYFARKGADC 761 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-~~i~~~~l~~~~l 761 (1167)
..++++++.+++...+.++... ..-.++|+|||||+|||+...+.|..+.... ....+..+++++-
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~ 104 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD 104 (360)
T ss_pred chhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc
Confidence 4678899999888888777432 2233899999999999999999999887531 1111112222221
Q ss_pred chhhhchHHHHHHHHHHHHHh-------cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 762 LGKYVGDAERQLRLLFQVAEK-------CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~-------~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
.+. +- ...--..|..++. ..+..++|||.|.+.. ..+++|.+.+..+..+.++. ..+
T Consensus 105 rgi--d~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~-----------~AQnALRRviek~t~n~rF~--ii~ 168 (360)
T KOG0990|consen 105 RGI--DP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR-----------DAQNALRRVIEKYTANTRFA--TIS 168 (360)
T ss_pred cCC--cc-hHHHHHHHHhhccceeccccCceeEEEecchhHhhH-----------HHHHHHHHHHHHhccceEEE--Eec
Confidence 111 11 1111223433332 2567999999998864 56677777777766554444 467
Q ss_pred CCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHH
Q 001066 835 NRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQ 900 (1167)
Q Consensus 835 N~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~ 900 (1167)
|++..+.|++++ || ..+.|.+.+..+-..++..+........+......++..+.|.....+.
T Consensus 169 n~~~ki~pa~qs--Rc-trfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n 231 (360)
T KOG0990|consen 169 NPPQKIHPAQQS--RC-TRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALN 231 (360)
T ss_pred cChhhcCchhhc--cc-ccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHH
Confidence 899999999998 88 6788888888888888888888776666666666666666554444433
No 253
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.47 E-value=1.6e-06 Score=104.94 Aligned_cols=149 Identities=21% Similarity=0.287 Sum_probs=92.0
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceE-----EEEec
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIA-----YFARK 757 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~-----~~~l~ 757 (1167)
..|.++.|...+++.+.- .+....+++|+||||+|||++++.|+..+........ ++++.
T Consensus 188 ~d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 478888898776665422 2234578999999999999999999876542211100 01110
Q ss_pred cc-----cc-------------chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 758 GA-----DC-------------LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 758 ~~-----~l-------------ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
+. .+ ....+|.....-...+..| ...+||||||+.+.. .++..|++.|
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A---~gGvLfLDEi~e~~~-----------~~~~~L~~~L 318 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLA---HNGVLFLDELPEFER-----------RTLDALREPI 318 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhc---cCCEEecCCchhCCH-----------HHHHHHHHHH
Confidence 00 00 0001111100111233333 458999999987754 7778888888
Q ss_pred hccc-----------CCCceEEEccCCCCC---------------------cCCcccCCCCCcccccccCCCCHH
Q 001066 820 DGLK-----------SRGSVVVIGATNRPE---------------------AVDPALRRPGRFDREIYFPLPSME 862 (1167)
Q Consensus 820 d~l~-----------~~~~ViVIaTTN~~d---------------------~Ld~aLlrpgRF~~~I~~~~P~~e 862 (1167)
+.-. ...++.+|+|+|... .++..++. ||+..+.++.|+.+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 5421 134689999998742 36678888 99999999988654
No 254
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.5e-07 Score=110.31 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=58.4
Q ss_pred hhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1094 LLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1094 ~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
.+-+.|+..+++ |||+||||||||+||+|||.+- | +.||.--|||.=.||.|.-=+.||.+|+..
T Consensus 328 kftrLGGKLPKG----VLLvGPPGTGKTlLARAvAGEA-~-VPFF~~sGSEFdEm~VGvGArRVRdLF~aA 392 (752)
T KOG0734|consen 328 KFTRLGGKLPKG----VLLVGPPGTGKTLLARAVAGEA-G-VPFFYASGSEFDEMFVGVGARRVRDLFAAA 392 (752)
T ss_pred HhhhccCcCCCc----eEEeCCCCCchhHHHHHhhccc-C-CCeEeccccchhhhhhcccHHHHHHHHHHH
Confidence 344557777777 9999999999999999999988 4 999999999999999999999999999864
No 255
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.43 E-value=1.6e-06 Score=104.16 Aligned_cols=194 Identities=19% Similarity=0.236 Sum_probs=116.3
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh-
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY- 765 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~- 765 (1167)
.++|.......+.+.+... .....++||+|++||||+++|++++...... ..+|+.+++..+....
T Consensus 144 ~ii~~S~~~~~~~~~~~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKI-----------ALSQASVLISGESGTGKELIARAIHYNSRRA--KGPFIKVNCAALPESLL 210 (457)
T ss_pred ceecccHHHhHHHHHHHHH-----------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCC--CCCeEEEECCCCCHHHH
Confidence 4566555555554443321 1234679999999999999999998765432 3467777776653211
Q ss_pred ----hchHHHH-------HHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--C-------C
Q 001066 766 ----VGDAERQ-------LRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--S-------R 825 (1167)
Q Consensus 766 ----~g~~e~~-------L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~-------~ 825 (1167)
+|..... ....|. ....++||||||+.|.. .++..|+..|+... . .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ld~i~~l~~-----------~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFE---RANEGTLLLDEIGEMPL-----------VLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceE---ECCCCEEEEechhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceee
Confidence 1100000 001122 23457999999999986 56778888876421 1 1
Q ss_pred CceEEEccCCCCC-------cCCcccCCCCCcccccccCCCCHHHHHHHHH----Hhhcc----CC---CCCChhHHHHH
Q 001066 826 GSVVVIGATNRPE-------AVDPALRRPGRFDREIYFPLPSMEDRAAILS----LHTER----WP---KPVTGSLLKWI 887 (1167)
Q Consensus 826 ~~ViVIaTTN~~d-------~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~----~~l~~----~~---~~l~d~~L~~L 887 (1167)
.++.||+||+..- .+.+.|.. |+ ..+.+..|...+|.+-+. .++.. +. ..+++..+..|
T Consensus 277 ~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 353 (457)
T PRK11361 277 VDIRIIAATNRDLQAMVKEGTFREDLFY--RL-NVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLL 353 (457)
T ss_pred eceEEEEeCCCCHHHHHHcCCchHHHHH--Hh-ccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 2478888887642 12222222 33 245567777777755332 22222 11 34677888888
Q ss_pred HHHccCCcHHHHHHHHHHHHHHH
Q 001066 888 AARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 888 A~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
..+....+.++|++++.+|...+
T Consensus 354 ~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 354 TAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred HcCCCCCcHHHHHHHHHHHHHhC
Confidence 88887778899999988876543
No 256
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.42 E-value=2.4e-06 Score=108.14 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=94.9
Q ss_pred ccChHHHHHHHHHHHHccccChhhhh--------ccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC--CceEEEEec
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFD--------NLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD--KRIAYFARK 757 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~--------~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~--~~i~~~~l~ 757 (1167)
|.|.+.+|+.|.-.+.-.......+. ...+....+|||+|+||||||.+|++|++...+.. ....+..+.
T Consensus 452 I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vg 531 (915)
T PTZ00111 452 IKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVG 531 (915)
T ss_pred EECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcccc
Confidence 58999999888655533221100000 01234445899999999999999999988644321 001222222
Q ss_pred ccccchhhhchH--HHHH-HHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-----------
Q 001066 758 GADCLGKYVGDA--ERQL-RLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK----------- 823 (1167)
Q Consensus 758 ~~~lls~~~g~~--e~~L-~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~----------- 823 (1167)
+..... +.... +..+ ...+. ....++++||||+.+.. ..+..|+..|+.-.
T Consensus 532 LTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkms~-----------~~Q~aLlEaMEqqtIsI~KaGi~~t 596 (915)
T PTZ00111 532 LTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKCHN-----------ESRLSLYEVMEQQTVTIAKAGIVAT 596 (915)
T ss_pred ccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhCCH-----------HHHHHHHHHHhCCEEEEecCCccee
Confidence 221110 00000 0000 00111 12457999999999875 56677888886421
Q ss_pred CCCceEEEccCCCCC-------------cCCcccCCCCCccccc-ccCCCCHHHHHHHHHH
Q 001066 824 SRGSVVVIGATNRPE-------------AVDPALRRPGRFDREI-YFPLPSMEDRAAILSL 870 (1167)
Q Consensus 824 ~~~~ViVIaTTN~~d-------------~Ld~aLlrpgRF~~~I-~~~~P~~eER~eIL~~ 870 (1167)
-+.++.||||+|... .|++.|++ ||+.++ .++.|+.+.=..|-..
T Consensus 597 L~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 597 LKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred cCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHH
Confidence 124689999998742 46788998 997664 4466666554444333
No 257
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=8.9e-07 Score=102.24 Aligned_cols=137 Identities=18% Similarity=0.258 Sum_probs=93.5
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC--------------------ceEEEEecccc---cchhh-hchHHHHH
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDK--------------------RIAYFARKGAD---CLGKY-VGDAERQL 773 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~--------------------~i~~~~l~~~~---lls~~-~g~~e~~L 773 (1167)
..+..+||+||+|+|||++|+.+|..+..... .-.|+.+.... --++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44568999999999999999999998753211 01233332210 00000 00123445
Q ss_pred HHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCC
Q 001066 774 RLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGR 849 (1167)
Q Consensus 774 ~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgR 849 (1167)
+.+...+.. ....|++||+++.|.. ...+.|+..|+... ..+.+|.+|+.++.+.+.+.+ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-----------~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL-----------QAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH-----------HHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 566555543 3456999999999875 56678888888764 335566688888899999988 8
Q ss_pred cccccccCCCCHHHHHHHHHH
Q 001066 850 FDREIYFPLPSMEDRAAILSL 870 (1167)
Q Consensus 850 F~~~I~~~~P~~eER~eIL~~ 870 (1167)
+ +.+.|++|+.++..+.|..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 8 8999999999998888864
No 258
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.39 E-value=5.3e-07 Score=108.55 Aligned_cols=199 Identities=20% Similarity=0.218 Sum_probs=117.5
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhh
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYV 766 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~ 766 (1167)
.++|.....+.+.+.+... .....+++|.|++||||+++|++++...... ..+|+.+++..+....+
T Consensus 135 ~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~--~~~~~~~~c~~~~~~~~ 201 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRA--NGPFIALNMAAIPKDLI 201 (463)
T ss_pred ceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCC--CCCeEEEeCCCCCHHHH
Confidence 4577766666666555331 1234579999999999999999998765532 35778888766532211
Q ss_pred -----chHHHH----HHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--C-------CCce
Q 001066 767 -----GDAERQ----LRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--S-------RGSV 828 (1167)
Q Consensus 767 -----g~~e~~----L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~-------~~~V 828 (1167)
|..... .............++||||||+.|.. .++..|+.+|+.-. . ...+
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~-----------~~q~~ll~~l~~~~~~~~~~~~~~~~~~ 270 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL-----------DAQTRLLRVLADGEFYRVGGRTPIKVDV 270 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH-----------HHHHHHHHHHhcCcEEECCCCceeeeee
Confidence 110000 00000001123468999999999975 56777888876421 1 1246
Q ss_pred EEEccCCCCC-------cCCcccCCCCCcccccccCCCCHHHH----HHHHHHhhcc----CC---CCCChhHHHHHHHH
Q 001066 829 VVIGATNRPE-------AVDPALRRPGRFDREIYFPLPSMEDR----AAILSLHTER----WP---KPVTGSLLKWIAAR 890 (1167)
Q Consensus 829 iVIaTTN~~d-------~Ld~aLlrpgRF~~~I~~~~P~~eER----~eIL~~~l~~----~~---~~l~d~~L~~LA~~ 890 (1167)
.||+||+..- .+.+.|.. |+ ..+.+..|...+| ..++..++.. ++ ..+++..+..|..+
T Consensus 271 rii~~~~~~l~~~~~~~~f~~~L~~--rl-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 271 RIVAATHQNLEALVRQGKFREDLFH--RL-NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred EEEEeCCCCHHHHHHcCCcHHHHHH--Hh-CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 7888886532 12223322 33 2234444444444 4444443332 22 34678888888888
Q ss_pred ccCCcHHHHHHHHHHHHHHHHH
Q 001066 891 TAGFAGADLQALCTQAAIIALK 912 (1167)
Q Consensus 891 t~G~s~aDL~~Lv~~A~~~A~~ 912 (1167)
..--+-++|++++.+|...+..
T Consensus 348 ~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 348 RWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred CCCChHHHHHHHHHHHHHhCCC
Confidence 7777889999999988776543
No 259
>PRK15115 response regulator GlrR; Provisional
Probab=98.36 E-value=2.5e-06 Score=102.20 Aligned_cols=168 Identities=19% Similarity=0.299 Sum_probs=107.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHH---------------HHhcC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQV---------------AEKCQ 784 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~---------------A~~~~ 784 (1167)
..+++|+|++|||||++|++|+...... ..+|+.+++..+...... ..+|.. .....
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~--~~~f~~i~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~ 228 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRA--SKPFIAINCGALPEQLLE------SELFGHARGAFTGAVSNREGLFQAAE 228 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCC--CCCeEEEeCCCCCHHHHH------HHhcCCCcCCCCCCccCCCCcEEECC
Confidence 4579999999999999999998876532 357888887765322111 111211 11234
Q ss_pred CcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccC---------CCceEEEccCCCCCcCCcccCCCCCcc----
Q 001066 785 PSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKS---------RGSVVVIGATNRPEAVDPALRRPGRFD---- 851 (1167)
Q Consensus 785 psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~---------~~~ViVIaTTN~~d~Ld~aLlrpgRF~---- 851 (1167)
.++||||||+.|.. .++..|+..|+.... ...+.+|+||+.. +...+. .++|.
T Consensus 229 ~gtl~l~~i~~l~~-----------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~-~~~f~~~l~ 294 (444)
T PRK15115 229 GGTLFLDEIGDMPA-----------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMA-RGEFREDLY 294 (444)
T ss_pred CCEEEEEccccCCH-----------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHH-cCCccHHHH
Confidence 57999999999986 667778888764211 1257888888753 322222 23341
Q ss_pred ---cccccCCCCHHHHHHH----HHHhhcc----CC---CCCChhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001066 852 ---REIYFPLPSMEDRAAI----LSLHTER----WP---KPVTGSLLKWIAARTAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 852 ---~~I~~~~P~~eER~eI----L~~~l~~----~~---~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~ 909 (1167)
..+.+..|...+|.+- ++.++.. +. ..+++..+..|..+....+.++|++++.+|...
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 2345566777777542 2333322 22 236788899999988777889999999887654
No 260
>CHL00176 ftsH cell division protein; Validated
Probab=98.35 E-value=4.4e-07 Score=112.94 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=51.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+++ + +.|+.++++++.++|.|...+.++.+|.+.
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~-~-~p~i~is~s~f~~~~~g~~~~~vr~lF~~A 271 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEA-E-VPFFSISGSEFVEMFVGVGAARVRDLFKKA 271 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-C-CCeeeccHHHHHHHhhhhhHHHHHHHHHHH
Confidence 39999999999999999999999 4 999999999999999999999999999864
No 261
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.34 E-value=9.6e-06 Score=89.97 Aligned_cols=114 Identities=24% Similarity=0.250 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC------------CCcCCcccCCCCCcc
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR------------PEAVDPALRRPGRFD 851 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~------------~d~Ld~aLlrpgRF~ 851 (1167)
-|.||||||+|.|-- .-.+.|-..++.-. .. ++|.+||+ |.-+|-.|+. |.
T Consensus 288 vpGVLFIDEvHMLDI-----------EcFsFlNrAlE~d~--~P-iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~- 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLDI-----------ECFSFLNRALENDM--AP-IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM- 350 (454)
T ss_pred ccceEEEeeehhhhh-----------HHHHHHHHHhhhcc--Cc-EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-
Confidence 388999999988753 22333333443211 12 33334443 4456767776 66
Q ss_pred cccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 001066 852 REIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 852 ~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
.+|...+++.++..+||+..+......+++..+..|......-+-+---.|+..|...+.+|.
T Consensus 351 lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk 413 (454)
T KOG2680|consen 351 LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK 413 (454)
T ss_pred heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 677888999999999999999888888888888887776655444444566777777777665
No 262
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.33 E-value=4.2e-07 Score=106.67 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=50.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh-hccc-chHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ-EGRG-DLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~-kyiG-esE~nvr~iF~~~ 1164 (1167)
+|||+||||||||+||++||+.+ +++|+++|++++.. .|+| ++|+.+|++|..+
T Consensus 52 ~ILliGp~G~GKT~LAr~LAk~l--~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A 107 (443)
T PRK05201 52 NILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (443)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CChheeecchhhccCCcccCCHHHHHHHHHHHH
Confidence 39999999999999999999999 49999999999996 6999 8899999999876
No 263
>PRK12377 putative replication protein; Provisional
Probab=98.33 E-value=3.4e-06 Score=93.88 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=62.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHH--HHHHHHHHHHhcCCcEEEEcCCCCcC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAER--QLRLLFQVAEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~--~L~~lF~~A~~~~psILfIDEID~L~ 797 (1167)
..+++|+||||||||+||.+||+.+......+ +.+...+++......... ....++... ....+|+||||....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v--~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV--IVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCe--EEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC
Confidence 35899999999999999999999987554444 334444554432221110 111222222 467899999997654
Q ss_pred cccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 798 PCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 798 ~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
. .......|+.+|+....... -+|.|||..
T Consensus 177 ~---------s~~~~~~l~~ii~~R~~~~~-ptiitSNl~ 206 (248)
T PRK12377 177 E---------TKNEQVVLNQIIDRRTASMR-SVGMLTNLN 206 (248)
T ss_pred C---------CHHHHHHHHHHHHHHHhcCC-CEEEEcCCC
Confidence 2 11334567777776544322 223378854
No 264
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.33 E-value=4.6e-07 Score=106.28 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=50.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh-hccc-chHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ-EGRG-DLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~-kyiG-esE~nvr~iF~~~ 1164 (1167)
+|||+||||||||+||++||+.+ +++|+.+|++++.. .|.| ++|+.+|++|..+
T Consensus 49 ~ILLiGppG~GKT~lAraLA~~l--~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 49 NILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCeEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 39999999999999999999999 49999999999984 8999 8999999999875
No 265
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.29 E-value=8.3e-07 Score=89.72 Aligned_cols=91 Identities=29% Similarity=0.471 Sum_probs=60.6
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcC
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~ 797 (1167)
....+|||+|++||||+++|++|+....... .+|+.+++..+. ..+++.+ .+.+|||+|||.|.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~--~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYSGRAN--GPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTTTTCC--S-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhcCccC--CCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC
Confidence 3456899999999999999999988765422 244444444322 2234433 67899999999997
Q ss_pred cccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 798 PCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 798 ~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
. ..+..|+..|+... ..++.+|+++..
T Consensus 83 ~-----------~~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 83 P-----------EAQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp H-----------HHHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred H-----------HHHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 5 66777888887643 445666666654
No 266
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=98.28 E-value=3.3e-07 Score=107.02 Aligned_cols=86 Identities=35% Similarity=0.626 Sum_probs=80.1
Q ss_pred cCCceEEeeccccCCceEEccCccccchHHHHhhcccccccCCCCCCCceeecCCCCCCcccccccCCCcceecccccee
Q 001066 512 IAGTWVHQHCAVWSPEVYFAGLGCLKNIRAALCRGRALKCTRCGRPGATIGCRVDRCPRTYHLPCARANGCIFDHRKFLI 591 (1167)
Q Consensus 512 ~~g~WvH~~CAlw~pev~~~~~~~l~~i~~~~~~~~~~~C~iC~~~GA~I~C~~~~C~~~FH~~CA~~~g~~~~~~~~~~ 591 (1167)
....|.|++|++|.|.+.+.....+.++...+.+.+.+.|..|.++|+++.|....|...+|++|+...-++.......+
T Consensus 236 ~~~~~~h~~c~~~~~~~~~~q~~~l~~~~~~v~r~~~~~c~~c~k~ga~~~c~~~~~~~~~h~~c~~~~~~~~~~~~r~v 315 (375)
T KOG1084|consen 236 GFELWYHRYCALWAPNVHESQGGQLTNVDNAVIRFPSLQCILCQKPGATLKCVQASLLSNAHFPCARAKNGIPLDYDRKV 315 (375)
T ss_pred chhHHHHHHHHhcCCcceeccCccccCchhhhhcccchhcccccCCCCchhhhhhhhhcccCcccccCcccccchhhhhc
Confidence 45679999999999999999989999999999999999999999999999999999999999999998888876656689
Q ss_pred cccccc
Q 001066 592 ACTDHR 597 (1167)
Q Consensus 592 ~C~~Hr 597 (1167)
+|+.|+
T Consensus 316 ~~~~h~ 321 (375)
T KOG1084|consen 316 SCPRHR 321 (375)
T ss_pred cCCCCC
Confidence 999999
No 267
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=98.28 E-value=4.7e-07 Score=115.38 Aligned_cols=138 Identities=21% Similarity=0.263 Sum_probs=112.1
Q ss_pred CCCCcceecCCCCCCCCCcceeccCCCCccccccCCCCCCCCCCcccccCCCCC------CcccccCCCCccccccCCce
Q 001066 443 KQGRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSASEEPNYDIWDGFGDEP------GWLGRLLGPINDRYGIAGTW 516 (1167)
Q Consensus 443 ~~~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~~~~~~~p------~~~g~~lg~~~~k~t~~g~W 516 (1167)
.+.-.|.+|++.+.+..|.++.|+.|...+|+.|||..-.+. .-.|.+..+.+ .+++++.|++++..+ .|.|
T Consensus 571 ~~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~l~~~~g~al~p~d-~gr~ 648 (1005)
T KOG1080|consen 571 WTTERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYD-GTSWVCDSCETLDIKRSCCLCPVKGGALKPTD-EGRW 648 (1005)
T ss_pred CCcccccccccccccccceeeeeccccccCCCcccccCCCCC-CCcchhhccccccCCchhhhccccCcccCCCC-ccch
Confidence 567899999999999999999999999999999999876544 33555555543 347888888887655 9999
Q ss_pred EEeeccccCCceEEccCcccc---chHHHHhhcccccccCCCCCCCceeecCCCCCCcccccccCCCcceeccc
Q 001066 517 VHQHCAVWSPEVYFAGLGCLK---NIRAALCRGRALKCTRCGRPGATIGCRVDRCPRTYHLPCARANGCIFDHR 587 (1167)
Q Consensus 517 vH~~CAlw~pev~~~~~~~l~---~i~~~~~~~~~~~C~iC~~~GA~I~C~~~~C~~~FH~~CA~~~g~~~~~~ 587 (1167)
+|+-||.|.|++.+.....+. ++..++.......|.+ .|-|.||+. |...||..||..+++.+...
T Consensus 649 ~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~ 717 (1005)
T KOG1080|consen 649 VHVECAWFRPEVCLASPERMEPAVGTFKIPALSFLKICFI---HGSCRQCCK--CETGSHAMCASRAGYIMEAV 717 (1005)
T ss_pred hhhhchhccccccCCCccCCCCcccccccCccchhhhccc---cccccccch--hhhcceehhhcCccChhhhh
Confidence 999999999999999877755 5666666666666666 888999986 89999999999999887443
No 268
>PRK08181 transposase; Validated
Probab=98.26 E-value=2.4e-06 Score=96.18 Aligned_cols=103 Identities=21% Similarity=0.274 Sum_probs=63.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchH-HHHHHHHHHHHHhcCCcEEEEcCCCCcCc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDA-ERQLRLLFQVAEKCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~-e~~L~~lF~~A~~~~psILfIDEID~L~~ 798 (1167)
..+++|+||||||||+||.+|++.+......+ +.+...+++..+.... ...+..++... ..+.+|+|||++.+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v--~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRV--LFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK 181 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCce--eeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC
Confidence 46799999999999999999999876544333 4444455554432111 11223333332 3578999999987654
Q ss_pred ccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 799 CRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 799 ~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
. ......|+.+++....... +|.|||.+
T Consensus 182 ~---------~~~~~~Lf~lin~R~~~~s--~IiTSN~~ 209 (269)
T PRK08181 182 D---------QAETSVLFELISARYERRS--ILITANQP 209 (269)
T ss_pred C---------HHHHHHHHHHHHHHHhCCC--EEEEcCCC
Confidence 1 1234567777766544433 34477764
No 269
>PF13173 AAA_14: AAA domain
Probab=98.26 E-value=2.5e-06 Score=85.14 Aligned_cols=120 Identities=23% Similarity=0.239 Sum_probs=64.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCccc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCR 800 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~ 800 (1167)
..++|+||.|||||++++.++..+. ... .++.++..+.......... +...+.......+.+||||||+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~--~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~-- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPE--NILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD-- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccc--cceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc--
Confidence 4689999999999999999998775 112 2333333322211111111 22233222222678999999998852
Q ss_pred CcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC----CcccCCCCCcccccccCCCCHHH
Q 001066 801 TRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV----DPALRRPGRFDREIYFPLPSMED 863 (1167)
Q Consensus 801 ~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L----d~aLlrpgRF~~~I~~~~P~~eE 863 (1167)
....+-.+++.. .++.||.|++....+ ...+ .||+ ..+++.+.+..|
T Consensus 76 ----------~~~~lk~l~d~~---~~~~ii~tgS~~~~l~~~~~~~l--~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 76 ----------WEDALKFLVDNG---PNIKIILTGSSSSLLSKDIAESL--AGRV-IEIELYPLSFRE 126 (128)
T ss_pred ----------HHHHHHHHHHhc---cCceEEEEccchHHHhhcccccC--CCeE-EEEEECCCCHHH
Confidence 222333333322 233444444433222 2334 4477 577887777765
No 270
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.4e-06 Score=110.51 Aligned_cols=195 Identities=17% Similarity=0.198 Sum_probs=137.1
Q ss_pred ccCcchhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhhccc----cChHHHHHhhHHHHHHHhhccCcccCCCC
Q 001066 600 FQPYGDQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLENCG----EDEEFLKREGKRLHRDLLRIAPVYIGGSD 675 (1167)
Q Consensus 600 fqp~g~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~~~~----~d~~~lk~~~~d~~~aL~~v~p~~~~~~~ 675 (1167)
+.|.-...+..++..+.+|.+|+|+.||..|+..++.+.++..+.+. -+...+++...+|..|+.++.|+..+.+.
T Consensus 455 ~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~ 534 (1080)
T KOG0732|consen 455 EPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSV 534 (1080)
T ss_pred CCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCcccc
Confidence 45566677899999999999999999999999999999887766433 36778889999999999999998776654
Q ss_pred CCCCCcccCcccccChHHHHHHHHHHHHccccChh-------hhhc------cCCCCCCcEEEEcCCCCcHHHHHHHHHH
Q 001066 676 SDSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPE-------FFDN------LGLTPPRGVLLHGHPGTGKTLVVRALIG 742 (1167)
Q Consensus 676 ~~~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e-------~~~~------lgl~~~~~VLL~GPpGTGKTtLAraLA~ 742 (1167)
.....+......+.++..+...++..+........ .++. ..+-....++|.|..|.|-+++..+|-+
T Consensus 535 ~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh 614 (1080)
T KOG0732|consen 535 IFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILH 614 (1080)
T ss_pred CCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHH
Confidence 44443333333344444444333333221111000 1111 1122335688999999999999999988
Q ss_pred HhhcCCCceEEEEecccccchhh-hchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCc
Q 001066 743 SCARGDKRIAYFARKGADCLGKY-VGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 743 ~l~~~~~~i~~~~l~~~~lls~~-~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~ 798 (1167)
.+.. ++........++... ..+.+..+..+|-+|++..|+||||-++|.+..
T Consensus 615 ~~~~----~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~ 667 (1080)
T KOG0732|consen 615 RLEG----LPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWAR 667 (1080)
T ss_pred HHhc----cchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhh
Confidence 8752 444455555555444 566788899999999999999999999997764
No 271
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.24 E-value=5.3e-06 Score=92.76 Aligned_cols=104 Identities=20% Similarity=0.236 Sum_probs=64.2
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHH-HHH-HHHHHHHhcCCcEEEEcCCCCc
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAER-QLR-LLFQVAEKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~-~L~-~lF~~A~~~~psILfIDEID~L 796 (1167)
...+++|+||||||||+||-||++++.... +.++.+..++++......... ... .+... -....+||||||...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g--~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~--l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAG--ISVLFITAPDLLSKLKAAFDEGRLEEKLLRE--LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEEHHHHHHHHHHHHhcCchHHHHHHH--hhcCCEEEEecccCc
Confidence 567899999999999999999999998433 455555556666543332221 111 11111 235689999999876
Q ss_pred CcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 797 APCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 797 ~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
.. .......++.+|......... |.|+|.+
T Consensus 180 ~~---------~~~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 180 PF---------SQEEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred cC---------CHHHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 43 112334455555555444444 5588865
No 272
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.21 E-value=4.1e-06 Score=96.85 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=62.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhch---HHHHHHHHHHHHHhcCCcEEEEcCCCCc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGD---AERQLRLLFQVAEKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~---~e~~L~~lF~~A~~~~psILfIDEID~L 796 (1167)
..+++|+||+|||||+||.+||+++..... .++.+...+++..+... ........+.. .....+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~--~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGK--SVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCC--eEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCC
Confidence 378999999999999999999999875543 44444455554433211 00011111222 235689999999876
Q ss_pred CcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 797 APCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 797 ~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
.. .......|+.+++.....+.-+|| |||.
T Consensus 259 ~~---------t~~~~~~Lf~iin~R~~~~k~tIi-TSNl 288 (329)
T PRK06835 259 KI---------TEFSKSELFNLINKRLLRQKKMII-STNL 288 (329)
T ss_pred CC---------CHHHHHHHHHHHHHHHHCCCCEEE-ECCC
Confidence 43 123445677777766544443444 6664
No 273
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.6e-06 Score=97.18 Aligned_cols=59 Identities=12% Similarity=0.260 Sum_probs=50.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhccc-------ceEEEEeehhhHhhhcccchHHHHHHHhhhcc
Q 001066 1106 SGFRVLISGSPGSGQRHLAACLLHSFIG-------NVEIQKVDLATISQEGRGDLVQGLTLLLSMFS 1165 (1167)
Q Consensus 1106 ~rp~iLf~GPpGtGKT~LAkaLA~~l~G-------~L~fisvD~sell~kyiGesE~nvr~iF~~~~ 1165 (1167)
+|- ||+.||||||||-|.||||+.|+= +-.++-|.--.|++||-+||=|+|.++|++..
T Consensus 177 NRl-iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRL-ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQ 242 (423)
T ss_pred eeE-EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHH
Confidence 344 999999999999999999998750 12467888899999999999999999999853
No 274
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.20 E-value=2.7e-06 Score=101.63 Aligned_cols=169 Identities=25% Similarity=0.314 Sum_probs=104.5
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHH---------------HHHhc
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQ---------------VAEKC 783 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~---------------~A~~~ 783 (1167)
....++|+|.+||||+++|+++....... ..+|+.++|..+....+.. .+|. .....
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~--~~~~i~~~c~~~~~~~~~~------~lfg~~~~~~~~~~~~~~g~~~~a 232 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARS--EKPLVTLNCAALNESLLES------ELFGHEKGAFTGADKRREGRFVEA 232 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCC--CCCeeeeeCCCCCHHHHHH------HhcCCCCCCcCCCCcCCCCceeEC
Confidence 34679999999999999999998765432 3578888877653221111 1111 01223
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--C-------CCceEEEccCCCCCcCCcccCCCCCcc---
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--S-------RGSVVVIGATNRPEAVDPALRRPGRFD--- 851 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~-------~~~ViVIaTTN~~d~Ld~aLlrpgRF~--- 851 (1167)
.+++||||||+.|.. .++..|+..++.-. . ...+.+|+||+..-. .+...++|.
T Consensus 233 ~~gtl~ldei~~l~~-----------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~---~~~~~~~~~~~l 298 (441)
T PRK10365 233 DGGTLFLDEIGDISP-----------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---AEVNAGRFRQDL 298 (441)
T ss_pred CCCEEEEeccccCCH-----------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHH
Confidence 568999999999986 56667777776421 1 124678877765321 111123332
Q ss_pred ----cccccCCCCHHHHHH----HHHHhhcc----CC---CCCChhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001066 852 ----REIYFPLPSMEDRAA----ILSLHTER----WP---KPVTGSLLKWIAARTAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 852 ----~~I~~~~P~~eER~e----IL~~~l~~----~~---~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~ 909 (1167)
..+.+..|...+|.+ +++.++.. +. ..+++..+..|..+...-+.++|++++++|...
T Consensus 299 ~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 245566677776654 33333332 11 236777888888877666788888888877654
No 275
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.19 E-value=1.1e-05 Score=89.64 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=61.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchH---HHHHHHHHHHHHhcCCcEEEEcCCCCcC
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDA---ERQLRLLFQVAEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~---e~~L~~lF~~A~~~~psILfIDEID~L~ 797 (1167)
.+++|+|+||||||+|+.+||..+..... .++.+...+++..+.... ......++... ....+|+||||+...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~--~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGK--SVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCC--eEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCCC
Confidence 48999999999999999999999875443 444445566554333221 11222344332 357899999998764
Q ss_pred cccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 798 PCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 798 ~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
. .. .....|..+++....... .+|.|||..
T Consensus 176 ~------s~---~~~~~l~~Ii~~Ry~~~~-~tiitSNl~ 205 (244)
T PRK07952 176 E------SR---YEKVIINQIVDRRSSSKR-PTGMLTNSN 205 (244)
T ss_pred C------CH---HHHHHHHHHHHHHHhCCC-CEEEeCCCC
Confidence 2 11 122345556665433222 334477753
No 276
>PRK06921 hypothetical protein; Provisional
Probab=98.17 E-value=7.7e-06 Score=92.06 Aligned_cols=107 Identities=14% Similarity=0.206 Sum_probs=60.0
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCC-c
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDG-L 796 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~-L 796 (1167)
...+++|+|+||+|||+|+.+||+.+... . ..++.+...+++....... ..+...+.. .....+|+|||++. +
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g--~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~~~ 190 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKG--VPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFKPV 190 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcC--ceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccccc
Confidence 35689999999999999999999988653 3 3334444444433221111 111122222 23568999999954 2
Q ss_pred CcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 797 APCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 797 ~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
.+. ..........|+.+++.......-+|| |||.
T Consensus 191 ~g~-----e~~t~~~~~~lf~iin~R~~~~k~tIi-tsn~ 224 (266)
T PRK06921 191 NGK-----PRATEWQIEQMYSVLNYRYLNHKPILI-SSEL 224 (266)
T ss_pred CCC-----ccCCHHHHHHHHHHHHHHHHCCCCEEE-ECCC
Confidence 221 111123344566777665444333444 6665
No 277
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.17 E-value=1.9e-05 Score=98.28 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=43.3
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
.+...|++++|+++++..|...+.. ..+++|+||||+|||+++++++..+..
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 3345799999999999988877643 247999999999999999999988754
No 278
>PRK06526 transposase; Provisional
Probab=98.16 E-value=3.7e-06 Score=93.99 Aligned_cols=104 Identities=19% Similarity=0.297 Sum_probs=60.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhch-HHHHHHHHHHHHHhcCCcEEEEcCCCCcC
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGD-AERQLRLLFQVAEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~-~e~~L~~lF~~A~~~~psILfIDEID~L~ 797 (1167)
...+++|+||||||||+||.+|+..+......+.| ....+++...... ....+...+.. ...+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f--~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF--ATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh--hhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 34689999999999999999999987654433333 3333443322111 01112222222 2357899999999775
Q ss_pred cccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 798 PCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 798 ~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
.. ......|+.+++....... +|.|||.+
T Consensus 173 ~~---------~~~~~~L~~li~~r~~~~s--~IitSn~~ 201 (254)
T PRK06526 173 FE---------PEAANLFFQLVSSRYERAS--LIVTSNKP 201 (254)
T ss_pred CC---------HHHHHHHHHHHHHHHhcCC--EEEEcCCC
Confidence 31 1233455666655443333 44477764
No 279
>PF05729 NACHT: NACHT domain
Probab=98.15 E-value=9.9e-06 Score=82.61 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=76.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCC-----ceEEEEecccccchh--------h----hchHHHHHHH-HHHHHHhc
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDK-----RIAYFARKGADCLGK--------Y----VGDAERQLRL-LFQVAEKC 783 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~-----~i~~~~l~~~~lls~--------~----~g~~e~~L~~-lF~~A~~~ 783 (1167)
-++|+|+||+|||++++.++..+..... .+.|+ +........ . .......+.. +...+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFF-FSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEE-EeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 4789999999999999999988765431 12222 211111110 0 0011111111 12233345
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc-ccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHH
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG-LKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSME 862 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~-l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~e 862 (1167)
...+|+||.+|.+...... .........|..++.. .....+++|.+.+.....+...+.. ...+.++..+.+
T Consensus 81 ~~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~~~ 153 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFSEE 153 (166)
T ss_pred CceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCCHH
Confidence 6789999999998752211 1122333344455544 2233334443222222222233332 156788889999
Q ss_pred HHHHHHHHhhcc
Q 001066 863 DRAAILSLHTER 874 (1167)
Q Consensus 863 ER~eIL~~~l~~ 874 (1167)
+..++++.++..
T Consensus 154 ~~~~~~~~~f~~ 165 (166)
T PF05729_consen 154 DIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHhhc
Confidence 999999887753
No 280
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.14 E-value=4.7e-05 Score=85.57 Aligned_cols=180 Identities=17% Similarity=0.145 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHH--hhcCCCceEEEEecccc----cchh-
Q 001066 692 QDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGS--CARGDKRIAYFARKGAD----CLGK- 764 (1167)
Q Consensus 692 e~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~--l~~~~~~i~~~~l~~~~----lls~- 764 (1167)
+..+++|.+.+... . .....|.|+|++|+|||+||..+++. ....+..+.++.+.... ++..
T Consensus 2 e~~~~~l~~~L~~~----------~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN----------S-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT----------T-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC----------C-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 34556666665431 1 34567889999999999999999987 44444333344332211 1100
Q ss_pred ------h------hchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEc
Q 001066 765 ------Y------VGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIG 832 (1167)
Q Consensus 765 ------~------~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIa 832 (1167)
. ..........+ .......+.+|+||+++... .+..+...+..... +..||.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l-~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~--~~kilv 134 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQL-RELLKDKRCLLVLDDVWDEE-------------DLEELREPLPSFSS--GSKILV 134 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHH-HHHHCCTSEEEEEEEE-SHH-------------HH-------HCHHS--S-EEEE
T ss_pred cccccccccccccccccccccccc-hhhhccccceeeeeeecccc-------------cccccccccccccc--cccccc
Confidence 0 01122223333 33334468999999987542 22223333322222 234444
Q ss_pred cCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCC---CCCChhHHHHHHHHccCCcHHHHHHHH
Q 001066 833 ATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWP---KPVTGSLLKWIAARTAGFAGADLQALC 903 (1167)
Q Consensus 833 TTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~---~~l~d~~L~~LA~~t~G~s~aDL~~Lv 903 (1167)
||..... -..+. .....+.++..+.++..++|...+.... ....+.....|+..+.| .|-.|..+.
T Consensus 135 TTR~~~v-~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 135 TTRDRSV-AGSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp EESCGGG-GTTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred ccccccc-ccccc---cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 7765422 11111 1136789999999999999998875433 11224566788888865 666665553
No 281
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.13 E-value=2.8e-05 Score=94.89 Aligned_cols=207 Identities=15% Similarity=0.198 Sum_probs=108.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc----eEEEEe--
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR----IAYFAR-- 756 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~----i~~~~l-- 756 (1167)
.+.++|+-..+-++.++.++...+ .+....+-+||+|||||||||+++.||.+++..... +.+...
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~ 87 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDN 87 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccccc
Confidence 467888888888888888876421 122334568889999999999999999999743211 000000
Q ss_pred cccccch------hhhchHHHHHHHH-HHHHHh-----------cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHH
Q 001066 757 KGADCLG------KYVGDAERQLRLL-FQVAEK-----------CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLAL 818 (1167)
Q Consensus 757 ~~~~lls------~~~g~~e~~L~~l-F~~A~~-----------~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~l 818 (1167)
...+..+ .|..... .+..+ +..++. ..+.||+|+|+-.+.... ...+...|..+
T Consensus 88 ~~~d~~s~~~~~~~f~sq~~-~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~~f~~~L~~~ 159 (519)
T PF03215_consen 88 QEDDFESDFNKFDEFLSQSD-KFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TSRFREALRQY 159 (519)
T ss_pred ccccccccccccccccchhh-hhccccccccccccccccCCCcCCCceEEEeeccccccchh-------HHHHHHHHHHH
Confidence 0000000 0111111 11111 111111 246799999998665411 13444444444
Q ss_pred hhcccCCCceEEEcc-CC------CCC--------cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccC-----CC-
Q 001066 819 MDGLKSRGSVVVIGA-TN------RPE--------AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW-----PK- 877 (1167)
Q Consensus 819 Ld~l~~~~~ViVIaT-TN------~~d--------~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~-----~~- 877 (1167)
+..-... .++||.| +. ... .+++.++...++ ..|.|.+-...-....|..++... +.
T Consensus 160 l~~~~~~-PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~ 237 (519)
T PF03215_consen 160 LRSSRCL-PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKN 237 (519)
T ss_pred HHcCCCC-CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCc
Confidence 4432111 5666655 11 111 234555543344 678888777766666666655433 11
Q ss_pred CCC--hhHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 001066 878 PVT--GSLLKWIAARTAGFAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 878 ~l~--d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~ 911 (1167)
..+ ...++.|+..+.| ||+.++..-...+.
T Consensus 238 ~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 238 KVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred cCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 112 2347888887766 55554444444444
No 282
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.12 E-value=7.3e-06 Score=92.82 Aligned_cols=201 Identities=20% Similarity=0.244 Sum_probs=124.9
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..|+.+++....++.+.+.... +. ..-.++||.|.+||||-.+|++......++ ..+|+.++|+.+-
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k-------~A----mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~--~~pFlalNCA~lP 267 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQK-------LA----MLDAPLLITGETGTGKDLLAKACHLASPRH--SKPFLALNCASLP 267 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHH-------hh----ccCCCeEEecCCCchHHHHHHHHhhcCccc--CCCeeEeecCCCc
Confidence 4566677666665555443221 11 123469999999999999999987665544 3588888887765
Q ss_pred hh-----hhchHH--HHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc---------CCC
Q 001066 763 GK-----YVGDAE--RQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK---------SRG 826 (1167)
Q Consensus 763 s~-----~~g~~e--~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~---------~~~ 826 (1167)
.. .+|... ..-..+|+.|.. +.+|||||..+.+ +++..|+.+|..-. -.-
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp-----------~lQaKLLRFL~DGtFRRVGee~Ev~v 333 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSP-----------RLQAKLLRFLNDGTFRRVGEDHEVHV 333 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcCH-----------HHHHHHHHHhcCCceeecCCcceEEE
Confidence 32 222221 234567777755 7899999988776 78888999886421 122
Q ss_pred ceEEEccCCCCC--cCCcccCC---CCCcccccccCCCCHHHHHHHH--------HHhhccCC---CCCChhHHHHHHHH
Q 001066 827 SVVVIGATNRPE--AVDPALRR---PGRFDREIYFPLPSMEDRAAIL--------SLHTERWP---KPVTGSLLKWIAAR 890 (1167)
Q Consensus 827 ~ViVIaTTN~~d--~Ld~aLlr---pgRF~~~I~~~~P~~eER~eIL--------~~~l~~~~---~~l~d~~L~~LA~~ 890 (1167)
.|.||+||..+- .+...-.| -+|+ .++.+..|...+|.+-+ +.+....+ ..++...+..|.++
T Consensus 334 dVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 334 DVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred EEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 589999997642 11221111 1133 34555666666665422 22222222 23566677778777
Q ss_pred ccCCcHHHHHHHHHHHHHHHH
Q 001066 891 TAGFAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 891 t~G~s~aDL~~Lv~~A~~~A~ 911 (1167)
-..-+-++|.+++-+|.....
T Consensus 413 ~WpGNVRqL~N~iyRA~s~~E 433 (511)
T COG3283 413 AWPGNVRQLKNAIYRALTLLE 433 (511)
T ss_pred CCCccHHHHHHHHHHHHHHhc
Confidence 776788899888888876543
No 283
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2e-06 Score=104.89 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=58.1
Q ss_pred hhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1093 SLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1093 ~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
..+...|+-.+++ +||+||||||||+||||+|.+- ++.||++-+|+-+.||+|--=+-||.+|.+.
T Consensus 173 ~ky~~lGakiPkG----vlLvGpPGTGKTLLAkAvAgEA--~VPFf~iSGS~FVemfVGvGAsRVRdLF~qA 238 (596)
T COG0465 173 KKYQALGAKIPKG----VLLVGPPGTGKTLLAKAVAGEA--GVPFFSISGSDFVEMFVGVGASRVRDLFEQA 238 (596)
T ss_pred hhhHhcccccccc----eeEecCCCCCcHHHHHHHhccc--CCCceeccchhhhhhhcCCCcHHHHHHHHHh
Confidence 3445556666676 9999999999999999999988 4999999999999999999999999999753
No 284
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=2.7e-05 Score=88.32 Aligned_cols=121 Identities=19% Similarity=0.296 Sum_probs=82.6
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-------------CceEEEEecccccchhhhchHHHHHHHHHHHHHh--
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGD-------------KRIAYFARKGADCLGKYVGDAERQLRLLFQVAEK-- 782 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-------------~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~-- 782 (1167)
..+..+||+||.|+||+++|.++|..+-... ..+.++.-... +..+ .-..++.+...+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~---~~~I--~idqiR~l~~~~~~~p 91 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK---GRLH--SIETPRAIKKQIWIHP 91 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC---CCcC--cHHHHHHHHHHHhhCc
Confidence 3456899999999999999999999875421 11222211111 0000 12334445444433
Q ss_pred --cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCC
Q 001066 783 --CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLP 859 (1167)
Q Consensus 783 --~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P 859 (1167)
....|++|+++|.+.. ...+.||..|+.. ..++++|..|+.++.+.|.++| |+ +.+.|+++
T Consensus 92 ~e~~~kv~ii~~ad~mt~-----------~AaNaLLK~LEEP--p~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 92 YESPYKIYIIHEADRMTL-----------DAISAFLKVLEDP--PQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred cCCCceEEEEechhhcCH-----------HHHHHHHHHhhcC--CCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 3346999999999975 6778899999863 4567777788889999999998 88 77888765
No 285
>PRK09183 transposase/IS protein; Provisional
Probab=98.09 E-value=1e-05 Score=90.81 Aligned_cols=106 Identities=22% Similarity=0.304 Sum_probs=62.6
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhch-HHHHHHHHHHHHHhcCCcEEEEcCCCCc
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGD-AERQLRLLFQVAEKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~-~e~~L~~lF~~A~~~~psILfIDEID~L 796 (1167)
....+++|+||||||||+||.+|+..+......+.| +...+++..+... ....+..+|... ...+.+|+|||++.+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~--~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF--TTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE--EeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 345689999999999999999998876543333333 3344444332111 111233444433 246789999999876
Q ss_pred CcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 797 APCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 797 ~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
... ......|+.+++....... +|.|||.+
T Consensus 177 ~~~---------~~~~~~lf~li~~r~~~~s--~iiTsn~~ 206 (259)
T PRK09183 177 PFS---------QEEANLFFQVIAKRYEKGS--MILTSNLP 206 (259)
T ss_pred CCC---------hHHHHHHHHHHHHHHhcCc--EEEecCCC
Confidence 431 1233456666665544444 34478764
No 286
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.09 E-value=3e-06 Score=89.76 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=59.8
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchH-HHHHHHHHHHHHhcCCcEEEEcCCCCcC
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDA-ERQLRLLFQVAEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~-e~~L~~lF~~A~~~~psILfIDEID~L~ 797 (1167)
...+++|+||||||||+||.+|+.++..... .++.+...+++..+.... ......++... ....+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~--~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY--SVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGYEP 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTSS-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc--ceeEeecCceeccccccccccchhhhcCcc--ccccEecccccceee
Confidence 4578999999999999999999998876444 344445555554332211 01122333333 246899999997543
Q ss_pred cccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 798 PCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 798 ~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
. .......|+.+|+....+.. .|.|||..
T Consensus 122 ~---------~~~~~~~l~~ii~~R~~~~~--tIiTSN~~ 150 (178)
T PF01695_consen 122 L---------SEWEAELLFEIIDERYERKP--TIITSNLS 150 (178)
T ss_dssp -----------HHHHHCTHHHHHHHHHT-E--EEEEESS-
T ss_pred e---------cccccccchhhhhHhhcccC--eEeeCCCc
Confidence 2 12344556777776654432 33388863
No 287
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.5e-05 Score=100.84 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=94.1
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCC-CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc---
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGL-TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL--- 762 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl-~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll--- 762 (1167)
.|+|+.++...|.++|...-. .++- .+...+||.||.|+|||-||+++|..+.... -.|+.++++.+.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse--~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE--ENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc--cceEEechhhhhhhh
Confidence 368999999999999876421 1111 3566799999999999999999999986433 356777766422
Q ss_pred ------hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc---------CCCc
Q 001066 763 ------GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK---------SRGS 827 (1167)
Q Consensus 763 ------s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~---------~~~~ 827 (1167)
..|+|..+ ...+.+..++.+.+||+|||||...+ .+++.|+.+|+.-. ...+
T Consensus 635 kligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkAh~-----------~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 635 KLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKAHP-----------DVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred hccCCCcccccchh--HHHHHHHHhcCCceEEEEechhhcCH-----------HHHHHHHHHHhcCccccCCCcEeeccc
Confidence 22455433 33566677777889999999997765 78888999998642 2246
Q ss_pred eEEEccCCCC
Q 001066 828 VVVIGATNRP 837 (1167)
Q Consensus 828 ViVIaTTN~~ 837 (1167)
++||+|+|.-
T Consensus 702 ~I~IMTsn~~ 711 (898)
T KOG1051|consen 702 AIFIMTSNVG 711 (898)
T ss_pred eEEEEecccc
Confidence 8999998863
No 288
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.08 E-value=2.1e-05 Score=97.14 Aligned_cols=192 Identities=15% Similarity=0.097 Sum_probs=118.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchH--HHHHH---HHHH--HHHhcCCcEEEEcCC
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDA--ERQLR---LLFQ--VAEKCQPSIIFFDEI 793 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~--e~~L~---~lF~--~A~~~~psILfIDEI 793 (1167)
.+|||.|++|++|++++++++..+.. ..+|..+.........+|.. +..++ .+|+ +.......||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~---~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPA---GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCC---CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCc
Confidence 57999999999999999999988753 13454443332222333321 22221 1111 111224589999999
Q ss_pred CCcCcccCcccccchHHHHHHHHHHhhcc-----------cCCCceEEEccCCCC---CcCCcccCCCCCcccccccCCC
Q 001066 794 DGLAPCRTRQQDQTHSSVVSTLLALMDGL-----------KSRGSVVVIGATNRP---EAVDPALRRPGRFDREIYFPLP 859 (1167)
Q Consensus 794 D~L~~~~~~~~~~~~~~vl~~LL~lLd~l-----------~~~~~ViVIaTTN~~---d~Ld~aLlrpgRF~~~I~~~~P 859 (1167)
..+.+ .++..|+..|+.- ....+|++|||-|.. ..|+++|+. ||...|.++.|
T Consensus 103 n~~~~-----------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERLEP-----------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccCCH-----------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 98876 8888999988752 223468999874432 347888998 99999999987
Q ss_pred CHHHHH-------HHHHHhhccCCCCCChhHHHHHHHHcc--CC-cHHHHHHHHHHHHHHHHHcC---CChHHHHHHHHH
Q 001066 860 SMEDRA-------AILSLHTERWPKPVTGSLLKWIAARTA--GF-AGADLQALCTQAAIIALKRN---FPLQEILSAAAE 926 (1167)
Q Consensus 860 ~~eER~-------eIL~~~l~~~~~~l~d~~L~~LA~~t~--G~-s~aDL~~Lv~~A~~~A~~R~---i~~~di~~~~e~ 926 (1167)
+..+.. .|......--...+++..+.+++..+. |. +.+....+++.|..+|..++ +...++..+..-
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~l 249 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARL 249 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 755432 333332211245567777777665443 33 55666677777777776654 445565554443
Q ss_pred Hh
Q 001066 927 KA 928 (1167)
Q Consensus 927 ~~ 928 (1167)
-+
T Consensus 250 vL 251 (584)
T PRK13406 250 VL 251 (584)
T ss_pred HH
Confidence 33
No 289
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3.9e-06 Score=98.97 Aligned_cols=48 Identities=31% Similarity=0.479 Sum_probs=40.2
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
...|.||.|++..++.+.-... -.+++||+||||||||+||+.+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4589999999999999876653 35789999999999999999886543
No 290
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.03 E-value=4.8e-06 Score=87.72 Aligned_cols=37 Identities=27% Similarity=0.555 Sum_probs=34.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccce----EEEEeehhhHhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNV----EIQKVDLATISQ 1147 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L----~fisvD~sell~ 1147 (1167)
.|||+||||||||+||++||..|. + +++.+||+++..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~--~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF--VGSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc--cCCccchHHHhhhcccc
Confidence 399999999999999999999994 5 999999999988
No 291
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.00 E-value=7.2e-06 Score=102.93 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=51.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++||+||||||||++|++||+++ + ++|+.++++++.++|.|..+++++.+|...
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~-~-~~f~~is~~~~~~~~~g~~~~~~~~~f~~a 240 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEA-K-VPFFTISGSDFVEMFVGVGASRVRDMFEQA 240 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc-C-CCEEEEehHHhHHhhhcccHHHHHHHHHHH
Confidence 39999999999999999999999 4 999999999999999999999999999764
No 292
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.99 E-value=2e-05 Score=90.43 Aligned_cols=75 Identities=13% Similarity=0.268 Sum_probs=48.2
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHH-HHHHHHHHHHHhcCCcEEEEcCCCCcC
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAE-RQLRLLFQVAEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e-~~L~~lF~~A~~~~psILfIDEID~L~ 797 (1167)
...+++|+||+|||||+||.+||+.+......+.|+.+ +.++..+..... ..+...+... ....||+||||..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~--~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF--PEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAEQ 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH--HHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCcc
Confidence 45789999999999999999999999755444444443 444433222111 1122333322 356899999997543
No 293
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.96 E-value=6e-06 Score=89.79 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhH
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATI 1145 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sel 1145 (1167)
.+|||||||+|||.||..||+++ | .+|..+.+|.+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~-~-~~~~~~sg~~i 86 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANEL-G-VNFKITSGPAI 86 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHC-T---EEEEECCC-
T ss_pred eEEEECCCccchhHHHHHHHhcc-C-CCeEeccchhh
Confidence 48999999999999999999999 4 89998888753
No 294
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.96 E-value=7.6e-06 Score=97.31 Aligned_cols=53 Identities=30% Similarity=0.430 Sum_probs=45.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh-hcccchHHH-HHHHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ-EGRGDLVQG-LTLLLSM 1163 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~-kyiGesE~n-vr~iF~~ 1163 (1167)
.+||+||||||||+||++||..+ +..|+.+|++++-. .|+|+...+ ++++++.
T Consensus 110 ~iLl~Gp~GtGKT~lAr~lA~~l--~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~ 164 (412)
T PRK05342 110 NILLIGPTGSGKTLLAQTLARIL--DVPFAIADATTLTEAGYVGEDVENILLKLLQA 164 (412)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh--CCCceecchhhcccCCcccchHHHHHHHHHHh
Confidence 39999999999999999999999 49999999999864 699997666 4666554
No 295
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.95 E-value=1.9e-05 Score=77.97 Aligned_cols=103 Identities=19% Similarity=0.326 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCC---CceEEEEecccccc--hhhh--------------chHHHHHHHHHHHH
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGD---KRIAYFARKGADCL--GKYV--------------GDAERQLRLLFQVA 780 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~---~~i~~~~l~~~~ll--s~~~--------------g~~e~~L~~lF~~A 780 (1167)
...++|+||||+|||++++.++..+.... ....++.+.+.... ..+. ......+..+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 45789999999999999999999874310 02444444333222 0000 11223334444455
Q ss_pred HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 781 EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 781 ~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
......+|+|||+|.|. ...++..|..+++ ...-.++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH----------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55445699999999874 0245555555555 222345555554
No 296
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.95 E-value=9.9e-06 Score=98.20 Aligned_cols=171 Identities=24% Similarity=0.355 Sum_probs=113.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch-----hhhchHHHHH--------HHHHHHHHhcCCc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG-----KYVGDAERQL--------RLLFQVAEKCQPS 786 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls-----~~~g~~e~~L--------~~lF~~A~~~~ps 786 (1167)
..++||.|.|||||-.++++|..... ..-+|+.++|..+-. .++|...... +..++.| ...
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~---~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A---~gG 409 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSE---AAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQA---DGG 409 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhccc---ccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceec---CCC
Confidence 45799999999999999999988765 234677777765432 2222222222 2233333 347
Q ss_pred EEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--------CCCceEEEccCCCCCcCCcccCCCCCccccccc--
Q 001066 787 IIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--------SRGSVVVIGATNRPEAVDPALRRPGRFDREIYF-- 856 (1167)
Q Consensus 787 ILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--------~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~-- 856 (1167)
.||+|||..+.- .+++.||..|+.-. ..-.|.||+||+++- ..|.+.|||...+++
T Consensus 410 tlFldeIgd~p~-----------~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL 475 (606)
T COG3284 410 TLFLDEIGDMPL-----------ALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRL 475 (606)
T ss_pred ccHHHHhhhchH-----------HHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHh
Confidence 899999998874 67788998887521 122488999998752 245556777655443
Q ss_pred -----CCCCHHHHHH---HHHHhhcc---CCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 857 -----PLPSMEDRAA---ILSLHTER---WPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 857 -----~~P~~eER~e---IL~~~l~~---~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
..|...+|.+ .|..++.. ++..+++..+..|..+-.--+-++|.+++..++..+
T Consensus 476 ~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 476 NAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred cCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 5576666644 33333332 456778888888777766668888999988877654
No 297
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00018 Score=82.38 Aligned_cols=147 Identities=12% Similarity=0.066 Sum_probs=94.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhc--------CCCceEEEEecccccchhhhchHHHHHHHHHHHHHh-----cCCc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCAR--------GDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEK-----CQPS 786 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~--------~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~-----~~ps 786 (1167)
.+.+||+|+.|.||+.+|+.+|..+.. ......++.++... ... .-..++.+.+.+.. ....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~~i--~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---KDL--SKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---CcC--CHHHHHHHHHHhccCCcccCCce
Confidence 456789999999999999999998732 11122233332100 101 11234444443321 2567
Q ss_pred EEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHH
Q 001066 787 IIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAA 866 (1167)
Q Consensus 787 ILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~e 866 (1167)
|++||+++.+.. ...+.|+..|+..+ ..+++|.+|+.+..+-+.+++ |. +.+.|.+|+.++..+
T Consensus 93 vvII~~~e~m~~-----------~a~NaLLK~LEEPp--~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 93 ILIIKNIEKTSN-----------SLLNALLKTIEEPP--KDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKILA 156 (299)
T ss_pred EEEEecccccCH-----------HHHHHHHHHhhCCC--CCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHHHH
Confidence 999999988764 56678999998743 445555566677888889888 88 789999999998888
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHccC
Q 001066 867 ILSLHTERWPKPVTGSLLKWIAARTAG 893 (1167)
Q Consensus 867 IL~~~l~~~~~~l~d~~L~~LA~~t~G 893 (1167)
.|... . +++.....+|..+.+
T Consensus 157 ~l~~~----~--~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 157 KLLSK----N--KEKEYNWFYAYIFSN 177 (299)
T ss_pred HHHHc----C--CChhHHHHHHHHcCC
Confidence 77653 1 233444445555443
No 298
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.88 E-value=4.7e-05 Score=86.20 Aligned_cols=166 Identities=22% Similarity=0.346 Sum_probs=100.3
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc----
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL---- 762 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll---- 762 (1167)
.+.|..+..+.+.+++..-+.. ...+++++.||.|+|||+++.............+-.+.+++.-..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 3578888888888887653221 345789999999999999887665442221222222333332211
Q ss_pred ---------------hhhhchHHHHHHHHHHHHHh-----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc
Q 001066 763 ---------------GKYVGDAERQLRLLFQVAEK-----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL 822 (1167)
Q Consensus 763 ---------------s~~~g~~e~~L~~lF~~A~~-----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l 822 (1167)
.+.+|.+...+..++...+. ..+.|.++||||.+.+- .-+.-|++++|-.
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHHHHH
Confidence 11223333334444443332 12345567799988761 2233466677654
Q ss_pred c-CCCceEEEccCCCCC---cCCcccCCCCCcccc-cccC-CCCHHHHHHHHHHhhc
Q 001066 823 K-SRGSVVVIGATNRPE---AVDPALRRPGRFDRE-IYFP-LPSMEDRAAILSLHTE 873 (1167)
Q Consensus 823 ~-~~~~ViVIaTTN~~d---~Ld~aLlrpgRF~~~-I~~~-~P~~eER~eIL~~~l~ 873 (1167)
. .+..+.|||.|.+.+ .|...+.+ ||.+. |+++ ..+..+-.+|++..+.
T Consensus 166 qs~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 166 QSARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred hhcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhc
Confidence 3 355688999887765 45678888 99776 5554 4478888888888764
No 299
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.86 E-value=5.1e-05 Score=81.73 Aligned_cols=120 Identities=17% Similarity=0.284 Sum_probs=66.7
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc--cccchhhh-------------------chHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG--ADCLGKYV-------------------GDAERQLR 774 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~--~~lls~~~-------------------g~~e~~L~ 774 (1167)
|++....++|+||||+|||+++..++.........+.|+.... ...+.... .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 6788888999999999999999999877654444444444432 00000000 01112244
Q ss_pred HHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 775 LLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 775 ~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
.+...+....+.+|+||-|..+.............+.+..++..|..+....++.+|.|..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 4444455557899999999988632111111111223333344444443455566665643
No 300
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.86 E-value=1.3e-05 Score=102.76 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=47.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhh------Hh---hhcccchHHHHHHHhhhc
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLAT------IS---QEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~se------ll---~kyiGesE~nvr~iF~~~ 1164 (1167)
+|.+||+||||||||+||++||+.+ + .+|+++.+.. +. ..|+|.....+.+.|.++
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l-~-~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~ 411 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKAL-N-RKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA 411 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-c-CCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh
Confidence 4569999999999999999999999 3 8999995543 33 579999999999988764
No 301
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.83 E-value=0.00022 Score=79.94 Aligned_cols=132 Identities=21% Similarity=0.312 Sum_probs=75.1
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe--cccccc-hh
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR--KGADCL-GK 764 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l--~~~~ll-s~ 764 (1167)
|.|+--+++.+...+...+..+ .-..|.-+-|||++||||.++++.||..+.+...+.+|+.. ....+- .+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 4677667776666665433222 22334456688999999999999999998765544444321 111111 11
Q ss_pred hhchHHHHH-HHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-----CCCceEEEccCCC
Q 001066 765 YVGDAERQL-RLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-----SRGSVVVIGATNR 836 (1167)
Q Consensus 765 ~~g~~e~~L-~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-----~~~~ViVIaTTN~ 836 (1167)
++..-...+ ..+...+..++.+|+++||+|.|.+ .++..|-..|+... ...+.++|.-+|.
T Consensus 158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~-----------gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP-----------GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH-----------hHHHHHhhhhccccccccccccceEEEEEcCC
Confidence 222222222 2333445577889999999999986 45555555555321 1234455555544
No 302
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.79 E-value=4.3e-06 Score=94.36 Aligned_cols=140 Identities=21% Similarity=0.308 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHH----H-------hcCCcE
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVA----E-------KCQPSI 787 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A----~-------~~~psI 787 (1167)
...++||+||+|||||++++.+-..+.... .....+...... ....+..+++.. + ..+..|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~--~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv 103 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDK--YLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLV 103 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCC--EEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccc--cceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEE
Confidence 357899999999999999998766554321 112222222111 112222222110 0 123459
Q ss_pred EEEcCCCCcCcccCcccccchHHHHHHHHHHhhc--ccC--------CCceEEEccCCCCC---cCCcccCCCCCccccc
Q 001066 788 IFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG--LKS--------RGSVVVIGATNRPE---AVDPALRRPGRFDREI 854 (1167)
Q Consensus 788 LfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~--l~~--------~~~ViVIaTTN~~d---~Ld~aLlrpgRF~~~I 854 (1167)
+||||+..-.... -+. ...+..|.++|+. +.. -.++.+||+++... .+++.|.| .| ..+
T Consensus 104 ~fiDDlN~p~~d~--ygt---q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~ 175 (272)
T PF12775_consen 104 LFIDDLNMPQPDK--YGT---QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NIL 175 (272)
T ss_dssp EEEETTT-S---T--TS-----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEE
T ss_pred EEecccCCCCCCC--CCC---cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEE
Confidence 9999999654311 111 1223333334432 111 12578888887532 46788887 66 789
Q ss_pred ccCCCCHHHHHHHHHHhhcc
Q 001066 855 YFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 855 ~~~~P~~eER~eIL~~~l~~ 874 (1167)
.++.|+.+....|+..++..
T Consensus 176 ~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 176 NIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp E----TCCHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHHHHHHhh
Confidence 99999999999999887764
No 303
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.79 E-value=0.0006 Score=81.60 Aligned_cols=209 Identities=15% Similarity=0.102 Sum_probs=100.9
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc----eEEEEe--
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR----IAYFAR-- 756 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~----i~~~~l-- 756 (1167)
.+.++|.=...-+..+++++... ..+..++ ..+-+||+||+||||||.++.|+.+++..... +.+...
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~~---~~~~~~l---~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~ 152 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQV---AEFTPKL---GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPEN 152 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHHH---HHhccCC---CceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccccc
Confidence 35667666666666666666410 1111111 23458889999999999999999999843211 010000
Q ss_pred --cccccchhhhchHHHHHHHHHHHHH------------hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc
Q 001066 757 --KGADCLGKYVGDAERQLRLLFQVAE------------KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL 822 (1167)
Q Consensus 757 --~~~~lls~~~g~~e~~L~~lF~~A~------------~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l 822 (1167)
+-......+....-.........+. ...+.+|+|||+-..... ...+.+..+|.++-..
T Consensus 153 ~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~-------d~~~~f~evL~~y~s~ 225 (634)
T KOG1970|consen 153 LHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR-------DDSETFREVLRLYVSI 225 (634)
T ss_pred ccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh-------hhHHHHHHHHHHHHhc
Confidence 0011111111111111122222221 124668999998766541 0223333333333322
Q ss_pred cCCCceEEEccCCCCCcCCcccCC------CCCcccccccCCCCHHHHHHHHHHhhccCCCCCC------hhHHHHHHHH
Q 001066 823 KSRGSVVVIGATNRPEAVDPALRR------PGRFDREIYFPLPSMEDRAAILSLHTERWPKPVT------GSLLKWIAAR 890 (1167)
Q Consensus 823 ~~~~~ViVIaTTN~~d~Ld~aLlr------pgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~------d~~L~~LA~~ 890 (1167)
...+-|+||.-+..++..++..+. ..|+ ..|.|.+-...-....|..++........ ...++.|+..
T Consensus 226 g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~ 304 (634)
T KOG1970|consen 226 GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG 304 (634)
T ss_pred CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh
Confidence 222223333223333333322211 2244 46777776666667777776665433333 3456666666
Q ss_pred ccCCcHHHHHHHHHHHHHH
Q 001066 891 TAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 891 t~G~s~aDL~~Lv~~A~~~ 909 (1167)
+.| ||+.++....+.
T Consensus 305 s~G----DIRsAInsLQls 319 (634)
T KOG1970|consen 305 SGG----DIRSAINSLQLS 319 (634)
T ss_pred cCc----cHHHHHhHhhhh
Confidence 655 555444443333
No 304
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.77 E-value=7.8e-05 Score=75.41 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=47.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc--------------------chhh--hchHHHHHHHHHHHH
Q 001066 723 VLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC--------------------LGKY--VGDAERQLRLLFQVA 780 (1167)
Q Consensus 723 VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l--------------------ls~~--~g~~e~~L~~lF~~A 780 (1167)
++|+||||+|||+++..++..+......+.|+....... .... ..........++..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 689999999999999999998865444444444322110 0000 001111222334555
Q ss_pred HhcCCcEEEEcCCCCcCc
Q 001066 781 EKCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 781 ~~~~psILfIDEID~L~~ 798 (1167)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667889999999998764
No 305
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.77 E-value=2.8e-05 Score=92.28 Aligned_cols=54 Identities=30% Similarity=0.355 Sum_probs=44.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHh-hhcccchHH-HHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATIS-QEGRGDLVQ-GLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell-~kyiGesE~-nvr~iF~~~ 1164 (1167)
.|||+||||||||+||++||+.+ + +.|+.+|.+.|. ..|.|+.+. -+.++++..
T Consensus 118 ~iLL~GP~GsGKT~lAraLA~~l-~-~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~ 173 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQTLARIL-N-VPFAIADATTLTEAGYVGEDVENILLKLLQAA 173 (413)
T ss_pred eEEEECCCCcCHHHHHHHHHHhc-C-CCeEEechhhccccccccccHHHHHHHHHHhC
Confidence 39999999999999999999999 3 899999999986 369999654 456666543
No 306
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.75 E-value=5.8e-05 Score=87.21 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=44.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
|||+||||||||-||-+||++|.-++.|..+.+||+.|.-+--|| .|.|-|-+.
T Consensus 53 iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE-~L~qa~Rra 106 (398)
T PF06068_consen 53 ILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE-ALTQAFRRA 106 (398)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH-HHHHHHHCS
T ss_pred EEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH-HHHHHHHHh
Confidence 999999999999999999999954699999999999999999888 677777653
No 307
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.0003 Score=78.53 Aligned_cols=121 Identities=11% Similarity=0.045 Sum_probs=80.5
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc-----------------eEEEEecccccchhhhchHHHHHHHHHHHH
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR-----------------IAYFARKGADCLGKYVGDAERQLRLLFQVA 780 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~-----------------i~~~~l~~~~lls~~~g~~e~~L~~lF~~A 780 (1167)
.++..+||+||.|+||..+|.++|..+-..... ..++.+.... ..-. ...++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I~----id~ir~l~~~l 79 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPIK----KEDALSIINKL 79 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccCC----HHHHHHHHHHH
Confidence 456789999999999999999999886432110 1111111100 0011 12233333322
Q ss_pred H----h-cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccc
Q 001066 781 E----K-CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIY 855 (1167)
Q Consensus 781 ~----~-~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~ 855 (1167)
. . ....|++|+++|.+.. ...+.||..|+. +..++++|.+|+.++.+.+.++| |. +.+.
T Consensus 80 ~~~s~e~~~~KV~II~~ae~m~~-----------~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RC-q~~~ 143 (261)
T PRK05818 80 NRPSVESNGKKIYIIYGIEKLNK-----------QSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RC-VQYV 143 (261)
T ss_pred ccCchhcCCCEEEEeccHhhhCH-----------HHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--he-eeee
Confidence 1 1 2357999999999875 667889999986 44567788889999999999999 88 5677
Q ss_pred cCCC
Q 001066 856 FPLP 859 (1167)
Q Consensus 856 ~~~P 859 (1167)
|+.+
T Consensus 144 ~~~~ 147 (261)
T PRK05818 144 VLSK 147 (261)
T ss_pred cCCh
Confidence 7766
No 308
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3.5e-05 Score=86.53 Aligned_cols=58 Identities=28% Similarity=0.397 Sum_probs=49.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh-cccchHHHH-HHHhhhccC
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE-GRGDLVQGL-TLLLSMFSF 1166 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k-yiGesE~nv-r~iF~~~~~ 1166 (1167)
.+.|||.||||+|||+||..||+.| ++.|-=-|--+|-.. |+||-.+|+ -+++|.|-|
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~L--nVPFaiADATtLTEAGYVGEDVENillkLlqaady 156 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKIL--NVPFAIADATTLTEAGYVGEDVENILLKLLQAADY 156 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHh--CCCeeeccccchhhccccchhHHHHHHHHHHHccc
Confidence 3459999999999999999999999 699999998888764 899988885 578887765
No 309
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00028 Score=80.37 Aligned_cols=148 Identities=14% Similarity=0.153 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc--eEE---------EEeccc
Q 001066 691 LQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR--IAY---------FARKGA 759 (1167)
Q Consensus 691 le~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~--i~~---------~~l~~~ 759 (1167)
+..+++.+..++.. + ..+..+||+|| +||+++|+.+|..+...... .++ ...+-+
T Consensus 7 q~~~~~~L~~~~~~-----------~-rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQ-----------D-RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHc-----------C-CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 34455555555543 1 44578999996 68999999999887543210 000 000111
Q ss_pred ccchhh-hc--hHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEc
Q 001066 760 DCLGKY-VG--DAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIG 832 (1167)
Q Consensus 760 ~lls~~-~g--~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIa 832 (1167)
++..-. .+ -.-..++.+...+.. ....|++||++|.+.. ...+.||..|+.. ..++++|.
T Consensus 73 D~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~-----------~AaNaLLKtLEEP--p~~t~~iL 139 (290)
T PRK07276 73 DVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHV-----------NAANSLLKVIEEP--QSEIYIFL 139 (290)
T ss_pred CeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCH-----------HHHHHHHHHhcCC--CCCeEEEE
Confidence 111000 01 012344555444433 3346999999999975 5677899888864 34577777
Q ss_pred cCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHH
Q 001066 833 ATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILS 869 (1167)
Q Consensus 833 TTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~ 869 (1167)
+|+.++.+.|.++| |+ +.|.|+. +.++..++|.
T Consensus 140 ~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 140 LTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred EECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 88889999999999 99 7888976 5666666664
No 310
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.66 E-value=0.00017 Score=70.04 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcC
Q 001066 723 VLLHGHPGTGKTLVVRALIGSCARG 747 (1167)
Q Consensus 723 VLL~GPpGTGKTtLAraLA~~l~~~ 747 (1167)
|+|+||||+|||++|+.||..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999888743
No 311
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.61 E-value=5.8e-05 Score=84.78 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=37.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEe------ehhhHhhhcccchH
Q 001066 1106 SGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKV------DLATISQEGRGDLV 1154 (1167)
Q Consensus 1106 ~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisv------D~sell~kyiGesE 1154 (1167)
.+| +||+||||||||+||++||..+ | ..|+.+ +-++|+..|.|...
T Consensus 21 g~~-vLL~G~~GtGKT~lA~~la~~l-g-~~~~~i~~~~~~~~~dllg~~~~~~~ 72 (262)
T TIGR02640 21 GYP-VHLRGPAGTGKTTLAMHVARKR-D-RPVMLINGDAELTTSDLVGSYAGYTR 72 (262)
T ss_pred CCe-EEEEcCCCCCHHHHHHHHHHHh-C-CCEEEEeCCccCCHHHHhhhhcccch
Confidence 355 9999999999999999999988 4 788877 44677777766443
No 312
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.60 E-value=0.00011 Score=86.34 Aligned_cols=107 Identities=21% Similarity=0.385 Sum_probs=62.0
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhhc-CCCceEEEEecc--cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCC
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCAR-GDKRIAYFARKG--ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEI 793 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~~-~~~~i~~~~l~~--~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEI 793 (1167)
..++++|+|||++|+|||+|.-.+...+.. ...+++|..... -.-+..+.+. ...+..+..... ....||+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~-~~~l~~va~~l~-~~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQ-DDPLPQVADELA-KESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCC-CccHHHHHHHHH-hcCCEEEEeee
Confidence 467899999999999999999999887764 333445432211 1111111111 111222222222 23459999999
Q ss_pred CCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 794 DGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 794 D~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
+.-- ....-++..|+..|= ..++++|+|+|.+
T Consensus 137 ~V~D--------iaDAmil~rLf~~l~----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVTD--------IADAMILKRLFEALF----KRGVVLVATSNRP 168 (362)
T ss_pred eccc--------hhHHHHHHHHHHHHH----HCCCEEEecCCCC
Confidence 8432 223455555555442 3568899999984
No 313
>PRK12377 putative replication protein; Provisional
Probab=97.60 E-value=6.6e-05 Score=83.69 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=41.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhhhcc-----cchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQEGR-----GDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~kyi-----GesE~nvr~iF~~~ 1164 (1167)
+|+|+|||||||||||.|||+.+. | ..++-+.+++|++... ++++..+-+-+.++
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g-~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 164 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKG-RSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKV 164 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC-CCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 499999999999999999999884 2 5677788899888553 34555554444444
No 314
>PRK08116 hypothetical protein; Validated
Probab=97.59 E-value=7.1e-05 Score=84.43 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=42.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhhhccc-------chHHHHHHHhhhcc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQEGRG-------DLVQGLTLLLSMFS 1165 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~kyiG-------esE~nvr~iF~~~~ 1165 (1167)
++||+|||||||||||.|||+.+. | ..++-++.+++++++.. +++..+.+.|..+.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~-~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d 180 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKG-VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD 180 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC
Confidence 499999999999999999999873 3 57788889998887642 34555555555443
No 315
>PF14516 AAA_35: AAA-like domain
Probab=97.59 E-value=0.012 Score=68.51 Aligned_cols=181 Identities=15% Similarity=0.201 Sum_probs=98.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch-------hhhch------------------------
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG-------KYVGD------------------------ 768 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls-------~~~g~------------------------ 768 (1167)
...+.|.||..+|||+|...+...+........++.+ ..+-. .+...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~--~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDL--QQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEe--ecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 4678999999999999999998888654433333333 22111 00000
Q ss_pred HHHHHHHHHHHH---HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc----cC---CCce--EEEccCCC
Q 001066 769 AERQLRLLFQVA---EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL----KS---RGSV--VVIGATNR 836 (1167)
Q Consensus 769 ~e~~L~~lF~~A---~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l----~~---~~~V--iVIaTTN~ 836 (1167)
........|+.. ....|-||+|||||.+... . .+...|+.+|... .. ..++ +++++|..
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~-----~----~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~ 179 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY-----P----QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTED 179 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccC-----c----chHHHHHHHHHHHHHhcccCcccceEEEEEecCccc
Confidence 001122223321 1246889999999999751 1 1223344444332 11 1233 33333322
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFP 916 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~ 916 (1167)
......-.+|..+...|.++.-+.+|...+++.+- ...+...++.|-..+.|+ |-= ++.+.........+
T Consensus 180 -~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~~~~l~~~tgGh-P~L----v~~~~~~l~~~~~~ 249 (331)
T PF14516_consen 180 -YIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQLEQLMDWTGGH-PYL----VQKACYLLVEEQIT 249 (331)
T ss_pred -ccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHHHHHHHHHHCCC-HHH----HHHHHHHHHHccCc
Confidence 21111123454556678888889999888777653 345566688899988884 433 33333333334555
Q ss_pred hHHHH
Q 001066 917 LQEIL 921 (1167)
Q Consensus 917 ~~di~ 921 (1167)
..++.
T Consensus 250 ~~~l~ 254 (331)
T PF14516_consen 250 LEQLL 254 (331)
T ss_pred HHHHH
Confidence 44443
No 316
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.56 E-value=0.0004 Score=76.78 Aligned_cols=123 Identities=20% Similarity=0.276 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~ 799 (1167)
..+-.++||+|||||.+++.+|..++ ..++..++...+.- ..+.++|.-+.. ..+-+++||+++|..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG-----~~~~vfnc~~~~~~------~~l~ril~G~~~-~GaW~cfdefnrl~~- 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALG-----RFVVVFNCSEQMDY------QSLSRILKGLAQ-SGAWLCFDEFNRLSE- 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT-------EEEEETTSSS-H------HHHHHHHHHHHH-HT-EEEEETCCCSSH-
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhC-----CeEEEecccccccH------HHHHHHHHHHhh-cCchhhhhhhhhhhH-
Confidence 45678999999999999999999998 45666666654432 334445543333 246699999999864
Q ss_pred cCcccccchHHHHHHHHHHhhc----cc--------------CCCceEEEccCCC----CCcCCcccCCCCCcccccccC
Q 001066 800 RTRQQDQTHSSVVSTLLALMDG----LK--------------SRGSVVVIGATNR----PEAVDPALRRPGRFDREIYFP 857 (1167)
Q Consensus 800 ~~~~~~~~~~~vl~~LL~lLd~----l~--------------~~~~ViVIaTTN~----~d~Ld~aLlrpgRF~~~I~~~ 857 (1167)
.+++.+...+.. +. -+...-++.|.|. ...||+.|+. -| +.+.+-
T Consensus 99 ----------~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~ 165 (231)
T PF12774_consen 99 ----------EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMM 165 (231)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--
T ss_pred ----------HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEe
Confidence 333332222211 11 1122334445553 3468888886 55 788888
Q ss_pred CCCHHHHHHHH
Q 001066 858 LPSMEDRAAIL 868 (1167)
Q Consensus 858 ~P~~eER~eIL 868 (1167)
.|+.....+++
T Consensus 166 ~PD~~~I~ei~ 176 (231)
T PF12774_consen 166 VPDLSLIAEIL 176 (231)
T ss_dssp S--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88887766655
No 317
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.0026 Score=70.44 Aligned_cols=178 Identities=24% Similarity=0.230 Sum_probs=108.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc-----chhhhch------------HHHHHHHHHHHHHh-c
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC-----LGKYVGD------------AERQLRLLFQVAEK-C 783 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l-----ls~~~g~------------~e~~L~~lF~~A~~-~ 783 (1167)
-+.++|+-|+|||++.|+++..+.... +..+.++...+ ...++.+ .+..-+.+.....+ .
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~--~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~ 130 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQ--VAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGK 130 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCc--eEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCC
Confidence 467899999999999997766665332 23334433222 1111111 11222333333333 4
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc---cCCCceEEEccCCCCCcC----CcccCCCCCccccccc
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL---KSRGSVVVIGATNRPEAV----DPALRRPGRFDREIYF 856 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l---~~~~~ViVIaTTN~~d~L----d~aLlrpgRF~~~I~~ 856 (1167)
.|.++++||.+.+.. ..+..|..+.+.. ...-++++||-..--..+ -..+.. |+...|.+
T Consensus 131 r~v~l~vdEah~L~~-----------~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l 197 (269)
T COG3267 131 RPVVLMVDEAHDLND-----------SALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIEL 197 (269)
T ss_pred CCeEEeehhHhhhCh-----------hHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEec
Confidence 568999999998875 3344443333222 222235666543211111 012333 77666889
Q ss_pred CCCCHHHHHHHHHHhhccCC---CCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 857 PLPSMEDRAAILSLHTERWP---KPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 857 ~~P~~eER~eIL~~~l~~~~---~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
++.+.++....|++++..-. ..+++..+..+...+.| .|..|.+++..|...|...+-
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~ 258 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGE 258 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999887642 23566788888888888 788999999999888876553
No 318
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=6.8e-05 Score=86.26 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLA 1143 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~s 1143 (1167)
.|||||||||||||.|+-||..- | |+.--+-|-
T Consensus 386 NilfyGPPGTGKTm~ArelAr~S-G-lDYA~mTGG 418 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHS-G-LDYAIMTGG 418 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhc-C-CceehhcCC
Confidence 69999999999999999999987 6 765444333
No 319
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.52 E-value=0.0001 Score=81.98 Aligned_cols=56 Identities=27% Similarity=0.420 Sum_probs=43.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhhhccc------chHHHHHHHhhhcc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQEGRG------DLVQGLTLLLSMFS 1165 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~kyiG------esE~nvr~iF~~~~ 1165 (1167)
+++|+|||||||||||.+||+.+. | ..++-+++++|++...+ .+++.+.+-|.++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~d 164 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRG-KSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVD 164 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCC
Confidence 499999999999999999999884 2 57788899999986543 34555555555544
No 320
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.00038 Score=86.68 Aligned_cols=160 Identities=20% Similarity=0.216 Sum_probs=88.2
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccC-CCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch---
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLG-LTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG--- 763 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lg-l~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls--- 763 (1167)
|.|.+.+|+.|.-.+.-... ....... +.---+|||.|.||||||.|.+.+++.+.+ ..|.+..++.-.+
T Consensus 288 IyG~e~VKkAilLqLfgGv~--k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr----~vytsgkgss~~GLTA 361 (682)
T COG1241 288 IYGHEDVKKAILLQLFGGVK--KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR----GVYTSGKGSSAAGLTA 361 (682)
T ss_pred ccCcHHHHHHHHHHhcCCCc--ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc----eEEEccccccccCcee
Confidence 58999999888655433211 1111100 222357999999999999999999887653 2222222211111
Q ss_pred hhhchHHHHHHHHHHHH---HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-----------CCCceE
Q 001066 764 KYVGDAERQLRLLFQVA---EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-----------SRGSVV 829 (1167)
Q Consensus 764 ~~~g~~e~~L~~lF~~A---~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-----------~~~~Vi 829 (1167)
..+-+.. ...+.-++ -...++|.+|||+|.+.. .....|...|+... -+.+.-
T Consensus 362 av~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~-----------~dr~aihEaMEQQtIsIaKAGI~atLnARcs 428 (682)
T COG1241 362 AVVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKMNE-----------EDRVAIHEAMEQQTISIAKAGITATLNARCS 428 (682)
T ss_pred EEEEccC--CCeEEEeCCEEEEecCCEEEEEeccCCCh-----------HHHHHHHHHHHhcEeeecccceeeecchhhh
Confidence 0000000 00000011 113578999999998763 33445666665421 123456
Q ss_pred EEccCCCCC-------------cCCcccCCCCCccccccc-CCCCHHHHHHHH
Q 001066 830 VIGATNRPE-------------AVDPALRRPGRFDREIYF-PLPSMEDRAAIL 868 (1167)
Q Consensus 830 VIaTTN~~d-------------~Ld~aLlrpgRF~~~I~~-~~P~~eER~eIL 868 (1167)
|+||+|... .|++.|++ ||+..+-+ ..|+.+.-..|.
T Consensus 429 vLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia 479 (682)
T COG1241 429 VLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIA 479 (682)
T ss_pred hhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHH
Confidence 788888754 46788998 99877655 345554333333
No 321
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.48 E-value=0.0004 Score=80.05 Aligned_cols=119 Identities=19% Similarity=0.245 Sum_probs=68.5
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc--------------cccchhhhchHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG--------------ADCLGKYVGDAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~--------------~~lls~~~g~~e~~L~~lF~~A~ 781 (1167)
|+++...++|+||||+|||+|+..++.........+.|+.... ..++-......+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 6788888999999999999999988777654433344442210 11111111223344444444455
Q ss_pred hcCCcEEEEcCCCCcCcccCcc---cc---cchHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 782 KCQPSIIFFDEIDGLAPCRTRQ---QD---QTHSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~~~~~~---~~---~~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
...+.+||||-+..|.+...-. ++ ....+.+..++..|.......++.+|.|.
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5678999999999887531100 11 12234444555555555445566666553
No 322
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.47 E-value=0.00014 Score=77.30 Aligned_cols=40 Identities=25% Similarity=0.516 Sum_probs=33.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~ky 1149 (1167)
+++|+|||||||||||.|||+++. | ..++-++.++|+++.
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g-~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKG-YSVLFITASDLLDEL 90 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEHHHHHHHH
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCC-cceeEeecCceeccc
Confidence 499999999999999999998664 3 667778999998875
No 323
>PRK06851 hypothetical protein; Provisional
Probab=97.45 E-value=0.0018 Score=75.92 Aligned_cols=222 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred cccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcC
Q 001066 705 PLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQ 784 (1167)
Q Consensus 705 pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~ 784 (1167)
+-.+..+|..+--...+-++|.|+||||||++++.|+..+......+.++...... ..
T Consensus 15 ~~Gf~s~~~~~~~~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~----------------------~s 72 (367)
T PRK06851 15 ARGFYSLYDSIIDGANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN----------------------DS 72 (367)
T ss_pred CCchhhhhhhhccccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC----------------------Cc
Q ss_pred CcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHH
Q 001066 785 PSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDR 864 (1167)
Q Consensus 785 psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER 864 (1167)
..-|+|-++. +.|...+.|..++|.. ||-.+..|.+.
T Consensus 73 lDgviip~l~----------------------------------~aivDgtaph~~~P~~--pgav~eiinL~------- 109 (367)
T PRK06851 73 LDGVIIPELK----------------------------------IAILDGTAPHVVDPKA--PGAVEEIINLG------- 109 (367)
T ss_pred eeeEEecCCC----------------------------------EEEEcCCCcCcCCCCC--CCcceEEEEHH-------
Q ss_pred HHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCccccCHH
Q 001066 865 AAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSFAVEER 944 (1167)
Q Consensus 865 ~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~ 944 (1167)
...+...+...-.....++.. +..+...|.+.-.....+. .
T Consensus 110 ------------~~~d~~~l~~~k~eI~~~~~~-----~~~~~~~Ay~~l~~A~~ih----------------------d 150 (367)
T PRK06851 110 ------------DAWDEDKLRKHKEEILKINEE-----ISRCFQRAYEYLNEALAIH----------------------D 150 (367)
T ss_pred ------------HHhChHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH----------------------H
Q ss_pred HHHHHhhcCCCCCCcccccccccccccCCCCCCccccccchhhhhhhhhhhhccccCCcchhHHHHHHHHHHHhhhhhhh
Q 001066 945 DWLEALSCSPPPCSKREAGIAAHDLVSSPLPSHLIPCLLQPLSTLLVSLYLDERLWLPPSLTKATKMIQSVIVSALDKKK 1024 (1167)
Q Consensus 945 D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~~~iip~v~w~l~~l~~~~~l~E~l~L~~~~~~~~~~i~~~i~~~l~~~~ 1024 (1167)
||. ..-++++.|..+. .+...+...++...+.
T Consensus 151 d~e----------------------------~~y~~~md~~k~~------------------~~~~~l~~~l~~~~~~-- 182 (367)
T PRK06851 151 EWE----------------------------KIYIENMDFAKAN------------------ELTDELIQELFKGAPG-- 182 (367)
T ss_pred HHH----------------------------HHHHHhCCHHHHH------------------HHHHHHHHHHhccCcc--
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHHhhcccccCCcccCCCcc--ccCCCCCccCCCCCccccccccchhhhhhhcccc
Q 001066 1025 LLSDHWWSHINDFLEEADIAKEIERRLQYAGIITGEASFSGLDA--FAGDSNDDCANSKPSIAHSYGINCSLLQNISCTA 1102 (1167)
Q Consensus 1025 ~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~~~~~~~~~~~~--~~~~~~~f~~~~kp~~~~~~~~~~~~~~~~~~~~ 1102 (1167)
. ......-|....-|.++ .+ .+-......
T Consensus 183 -------------------------------------------~~~~g~~rh~F~ga~Tp~G~-----~s-~~~~l~~~~ 213 (367)
T PRK06851 183 -------------------------------------------KISKGKVRHLFLGAITPKGA-----VD-FVPSLTEGV 213 (367)
T ss_pred -------------------------------------------cccCCceeeeeccccCCCcH-----Hh-hHHhHhccc
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 001066 1103 SKGSGFRVLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1103 ~~~~rp~iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
.+. ++|.|+||||||.|.+.|+..+
T Consensus 214 ~~~----~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 214 KNR----YFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred ceE----EEEeCCCCCcHHHHHHHHHHHH
No 324
>PHA00729 NTP-binding motif containing protein
Probab=97.45 E-value=0.0005 Score=75.44 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.+|+|+|+||||||+||.+||..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 325
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.44 E-value=0.00025 Score=86.28 Aligned_cols=165 Identities=23% Similarity=0.284 Sum_probs=90.8
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccC-CCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch--h
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLG-LTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG--K 764 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lg-l~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls--~ 764 (1167)
|.|++++|+.|.-.|-- .....+...| ....-+|||+|.||||||.|.+.+++.+.+. .+.+-.++...+ .
T Consensus 431 Iye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg----~yTSGkGsSavGLTa 504 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG----VYTSGKGSSAVGLTA 504 (804)
T ss_pred hhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc----eeecCCccchhccee
Confidence 58899999887554422 1122222222 2333579999999999999999998876542 122211111111 1
Q ss_pred hhchHHHHHHHHHHHH---HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc-----------cCCCceEE
Q 001066 765 YVGDAERQLRLLFQVA---EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL-----------KSRGSVVV 830 (1167)
Q Consensus 765 ~~g~~e~~L~~lF~~A---~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l-----------~~~~~ViV 830 (1167)
|+.-... -+++..+. -....+|-.|||||.+.. ...+.|...|+.- .-+.+.-|
T Consensus 505 yVtrd~d-tkqlVLesGALVLSD~GiCCIDEFDKM~d-----------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SV 572 (804)
T KOG0478|consen 505 YVTKDPD-TRQLVLESGALVLSDNGICCIDEFDKMSD-----------STRSVLHEVMEQQTLSIAKAGIIASLNARCSV 572 (804)
T ss_pred eEEecCc-cceeeeecCcEEEcCCceEEchhhhhhhH-----------HHHHHHHHHHHHhhhhHhhcceeeecccccee
Confidence 1100000 01111111 123567899999999853 2233455555431 11335668
Q ss_pred EccCCCCC-------------cCCcccCCCCCccccc-ccCCCCHHHHHHHHHHhh
Q 001066 831 IGATNRPE-------------AVDPALRRPGRFDREI-YFPLPSMEDRAAILSLHT 872 (1167)
Q Consensus 831 IaTTN~~d-------------~Ld~aLlrpgRF~~~I-~~~~P~~eER~eIL~~~l 872 (1167)
||++|... .|++.|++ ||+.++ -+..|+...=+.|-.++.
T Consensus 573 LAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 573 LAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred eeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHH
Confidence 88888532 46899999 998765 446666663344444433
No 326
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.42 E-value=0.0095 Score=70.76 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=55.2
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHh-hcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcC
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSC-ARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l-~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~ 797 (1167)
...++++.||+|||||+|+.+|+... .... - ....+.++ .+... ..+. .-....+|+|||+..+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~--f~T~a~Lf----~~L~~---~~lg--~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---G--TITVAKLF----YNIST---RQIG--LVGRWDVVAFDEVATLK 273 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---C--cCcHHHHH----HHHHH---HHHh--hhccCCEEEEEcCCCCc
Confidence 45789999999999999999988762 1111 1 11112222 11111 1111 12356899999999865
Q ss_pred cccCcccccchHHHHHHHHHHhhc---------ccCCCceEEEccCCC
Q 001066 798 PCRTRQQDQTHSSVVSTLLALMDG---------LKSRGSVVVIGATNR 836 (1167)
Q Consensus 798 ~~~~~~~~~~~~~vl~~LL~lLd~---------l~~~~~ViVIaTTN~ 836 (1167)
-. ....+++.|...|.. +....+++++|-++.
T Consensus 274 ~~-------~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 274 FA-------KPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred CC-------chHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 31 123455666666653 123345677775554
No 327
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.37 E-value=0.00013 Score=83.12 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=43.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHH
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQ 1155 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~ 1155 (1167)
+-+|||+||||||||-||=+||++|.....|..+-+||+.+--..-||.
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~ 113 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEA 113 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHH
Confidence 3359999999999999999999999436999999999999988888874
No 328
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.37 E-value=0.00089 Score=70.37 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=26.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
.+||+||||||||+|+..++.........+.|+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 37899999999999999988876554445555544
No 329
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.00022 Score=79.94 Aligned_cols=53 Identities=21% Similarity=0.400 Sum_probs=42.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccc--eEEEEeehhhHhhhcc-----cchHHHHHHHhhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGN--VEIQKVDLATISQEGR-----GDLVQGLTLLLSM 1163 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~--L~fisvD~sell~kyi-----GesE~nvr~iF~~ 1163 (1167)
++|||||||||||||-|||+++. + +.++=+..|+++++-. |.+|.-|-+.+.+
T Consensus 108 l~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~ 167 (254)
T COG1484 108 LVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKK 167 (254)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhc
Confidence 99999999999999999999986 3 7788889999987643 3566666665444
No 330
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.0011 Score=68.65 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARG 747 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~ 747 (1167)
...|+++|+||+||||++.-||..+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 4579999999999999999999888654
No 331
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.32 E-value=0.0008 Score=73.47 Aligned_cols=42 Identities=26% Similarity=0.441 Sum_probs=32.7
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK 757 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~ 757 (1167)
|++...-++|+|+||+|||+++..+|.........+.|+...
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 677777899999999999999999998775544445555444
No 332
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.32 E-value=0.00092 Score=77.22 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=67.2
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc--------------cccchhhhchHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG--------------ADCLGKYVGDAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~--------------~~lls~~~g~~e~~L~~lF~~A~ 781 (1167)
|++..+.++|+||||+|||+|+-.++.........+.|+.... ..++-......+..+..+...++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 6788888999999999999999998877654433334432211 11111111123334444444445
Q ss_pred hcCCcEEEEcCCCCcCcccC-c--cccc---chHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 782 KCQPSIIFFDEIDGLAPCRT-R--QQDQ---THSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~~~~-~--~~~~---~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
...+.+|+||-+-.|.+... . .++. ...+.+..++..|.......++.+|.|.
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tN 189 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFIN 189 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 56789999999998875211 1 1111 1234444555555544445556666553
No 333
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.31 E-value=0.0003 Score=68.14 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=31.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccce--EEEEeehhhHhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNV--EIQKVDLATISQ 1147 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L--~fisvD~sell~ 1147 (1167)
.+||+||||||||.||++||..+. .. .++.++++....
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~-~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELG-PPGGGVIYIDGEDILE 43 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccC-CCCCCEEEECCEEccc
Confidence 489999999999999999999994 44 488888876543
No 334
>PRK10536 hypothetical protein; Provisional
Probab=97.30 E-value=0.0023 Score=71.51 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=31.7
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGS 743 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~ 743 (1167)
.+..|.+.......+..++.. ..-+++.||+|||||+||.++|..
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~---------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES---------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc---------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344455665555555554422 236889999999999999999985
No 335
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.00018 Score=83.43 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=35.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
+++||||||||||.||++||..+ +.+|+.|.--+ .+-+-||+||.+
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~--~~~f~~~sAv~-------~gvkdlr~i~e~ 95 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTT--NAAFEALSAVT-------SGVKDLREIIEE 95 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhh--CCceEEecccc-------ccHHHHHHHHHH
Confidence 48999999999999999999999 48888875321 244556666654
No 336
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.28 E-value=0.0016 Score=71.74 Aligned_cols=82 Identities=20% Similarity=0.405 Sum_probs=50.9
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc--ccc----------hhh------------------
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA--DCL----------GKY------------------ 765 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~--~ll----------s~~------------------ 765 (1167)
|++....++|+|+||+|||+++.+++.........+-|+..... .++ ..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 77888899999999999999999997764333334444443211 000 000
Q ss_pred -hchHHHHHHHHHHHHHhcCCcEEEEcCCCCcC
Q 001066 766 -VGDAERQLRLLFQVAEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 766 -~g~~e~~L~~lF~~A~~~~psILfIDEID~L~ 797 (1167)
.......+..+........+.+|+||++..+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 01112334444444555688999999998664
No 337
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.00026 Score=79.87 Aligned_cols=40 Identities=30% Similarity=0.479 Sum_probs=33.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~ky 1149 (1167)
+++|+|||||||||||.+||+++. | ..++-+.+++|++++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g-~~v~f~~~~~L~~~l 149 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFTRTTDLVQKL 149 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcC-CceeeeeHHHHHHHH
Confidence 399999999999999999997652 3 457778889999976
No 338
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.27 E-value=0.00029 Score=80.95 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=34.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhhhcc
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQEGR 1150 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~kyi 1150 (1167)
.+++|||||||||||||.|||+++. | ..+.-+.+|+++++..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g-~~v~~~~~~~l~~~lk 200 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKG-VSSTLLHFPEFIRELK 200 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC-CCEEEEEHHHHHHHHH
Confidence 3599999999999999999999984 2 5567778898877653
No 339
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.00018 Score=80.10 Aligned_cols=34 Identities=29% Similarity=0.555 Sum_probs=30.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATI 1145 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sel 1145 (1167)
+|||||||.|||.||..||+++ | .|+-..-+|-|
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Em-g-vn~k~tsGp~l 88 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANEL-G-VNLKITSGPAL 88 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHh-c-CCeEecccccc
Confidence 8999999999999999999999 4 88887777755
No 340
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00017 Score=84.76 Aligned_cols=47 Identities=28% Similarity=0.468 Sum_probs=40.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
|.|||||||||||-+..|||+.| +.+++-+.++++-+ .+| ||+++..
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L--~ydIydLeLt~v~~----n~d--Lr~LL~~ 283 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL--NYDIYDLELTEVKL----DSD--LRHLLLA 283 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc--CCceEEeeeccccC----cHH--HHHHHHh
Confidence 38999999999999999999999 59999999988754 345 8887764
No 341
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.24 E-value=0.0047 Score=75.11 Aligned_cols=197 Identities=16% Similarity=0.142 Sum_probs=109.8
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc---cc
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD---CL 762 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~---ll 762 (1167)
-.|.|.+.+|.-|.-.+--....... +...+.---+|+|+|.||+||+-+.++++.-+.+. .|..-+... +.
T Consensus 345 PsIyGhe~VK~GilL~LfGGv~K~a~-eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~----vYtsGkaSSaAGLT 419 (764)
T KOG0480|consen 345 PSIYGHELVKAGILLSLFGGVHKSAG-EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS----VYTSGKASSAAGLT 419 (764)
T ss_pred ccccchHHHHhhHHHHHhCCccccCC-CCccccCCceEEEeCCCCccHHHHHHHHhccCCcc----eEecCcccccccce
Confidence 35789999998886555332221111 22233444689999999999999999998765431 222111111 11
Q ss_pred hhhhchHHHHHHHHHHH--HHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc-----------cCCCceE
Q 001066 763 GKYVGDAERQLRLLFQV--AEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL-----------KSRGSVV 829 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~--A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l-----------~~~~~Vi 829 (1167)
...+-+.+. -.-.++. .-....+|-.|||||.+.. +-+.+|...|+.- .-+.+.-
T Consensus 420 aaVvkD~es-gdf~iEAGALmLADnGICCIDEFDKMd~-----------~dqvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 420 AAVVKDEES-GDFTIEAGALMLADNGICCIDEFDKMDV-----------KDQVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred EEEEecCCC-CceeeecCcEEEccCceEEechhcccCh-----------HhHHHHHHHHHhheehheecceEEeecchhh
Confidence 000000000 0000100 0113568999999998864 2344677777642 1123456
Q ss_pred EEccCCCCC-------------cCCcccCCCCCccccc-ccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCc
Q 001066 830 VIGATNRPE-------------AVDPALRRPGRFDREI-YFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFA 895 (1167)
Q Consensus 830 VIaTTN~~d-------------~Ld~aLlrpgRF~~~I-~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s 895 (1167)
|||++|+.. .+.++|++ ||+..+ -+..|+...-..|-+.++..... +++. ......|+
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~-i~~~-----~~~~~~~~ 559 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRG-IDDA-----TERVCVYT 559 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhcc-cccc-----cccccccc
Confidence 888888743 35788998 997654 56788888777777776654221 1211 11113566
Q ss_pred HHHHHHHHHHHH
Q 001066 896 GADLQALCTQAA 907 (1167)
Q Consensus 896 ~aDL~~Lv~~A~ 907 (1167)
..+++.-+..|.
T Consensus 560 ~e~vrkYi~yAR 571 (764)
T KOG0480|consen 560 LEQVRKYIRYAR 571 (764)
T ss_pred HHHHHHHHHHHH
Confidence 666655555443
No 342
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.22 E-value=0.0024 Score=70.56 Aligned_cols=114 Identities=18% Similarity=0.323 Sum_probs=61.0
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc--cccchh----------h---------------h--
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG--ADCLGK----------Y---------------V-- 766 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~--~~lls~----------~---------------~-- 766 (1167)
|+++...++|.|+||||||+++..++..+........|+.... .+++.. + .
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 5677778999999999999998666554433333333333211 011000 0 0
Q ss_pred chHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 767 GDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 767 g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
......+..+...+....|.+++||++-.+.... .+ ......++.++..+...+. .+|.|++.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~---~d---~~~~~~l~~~l~~l~~~g~-tvi~t~~~ 162 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISND---AS---EVAVNDLMAFFKRISSLNK-VIILTANP 162 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCC---cc---hHHHHHHHHHHHHHHhCCC-EEEEEecc
Confidence 0113344555555555678999999998765210 01 1222345555554434444 44445553
No 343
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.22 E-value=0.00029 Score=68.85 Aligned_cols=31 Identities=39% Similarity=0.655 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
|+++||||+|||.+|+.||..| | +.++.+|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~-~-~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL-G-FPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-T-CEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-C-CeEEEecc
Confidence 8999999999999999999998 4 77777776
No 344
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.21 E-value=0.0029 Score=73.22 Aligned_cols=160 Identities=26% Similarity=0.329 Sum_probs=88.6
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc-----
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL----- 762 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll----- 762 (1167)
+.+.+.++..+..++-. + .-..|..|+|+|..|||||++++.+.+.+..+. +.+++-++.
T Consensus 8 v~~Re~qi~~L~~Llg~---------~-~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~-----vw~n~~ecft~~~l 72 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGN---------N-SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLEN-----VWLNCVECFTYAIL 72 (438)
T ss_pred ccchHHHHHHHHHHhCC---------C-CcccceeEEEeccCCCchhHHHHHHHhhcCCcc-----eeeehHHhccHHHH
Confidence 46788888888887632 1 124566789999999999999999998875332 222221111
Q ss_pred ----------hhhhchHH----HHH---HHHHHH---HHhc-CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc
Q 001066 763 ----------GKYVGDAE----RQL---RLLFQV---AEKC-QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG 821 (1167)
Q Consensus 763 ----------s~~~g~~e----~~L---~~lF~~---A~~~-~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~ 821 (1167)
..+.|... ..+ -.+|.. +... +..+|++|++|.|.. ....+++.|+.+-+-
T Consensus 73 le~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD--------~~a~ll~~l~~L~el 144 (438)
T KOG2543|consen 73 LEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD--------MDAILLQCLFRLYEL 144 (438)
T ss_pred HHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc--------cchHHHHHHHHHHHH
Confidence 01111111 111 112222 2222 456899999999863 233556666655443
Q ss_pred ccCCCceEEEccCCCCCcCCcccCCCCCc-ccccccCCCCHHHHHHHHHHhhc
Q 001066 822 LKSRGSVVVIGATNRPEAVDPALRRPGRF-DREIYFPLPSMEDRAAILSLHTE 873 (1167)
Q Consensus 822 l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF-~~~I~~~~P~~eER~eIL~~~l~ 873 (1167)
+.. ..+.||.+...... .-+.+-|-+ ...++||.|+.++...|+..-..
T Consensus 145 ~~~-~~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 145 LNE-PTIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred hCC-CceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 322 23333333222111 011111122 35789999999999999976544
No 345
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.20 E-value=0.00035 Score=70.29 Aligned_cols=33 Identities=30% Similarity=0.592 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLAT 1144 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~se 1144 (1167)
+||+||||||||.||+.||+.+ + ..++.+-++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-~-~~~~~i~~~~ 34 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-G-RPVIRINCSS 34 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-T-CEEEEEE-TT
T ss_pred EEEECCCCCCHHHHHHHHHHHh-h-cceEEEEecc
Confidence 8999999999999999999999 3 7888777665
No 346
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.20 E-value=9.7e-05 Score=85.81 Aligned_cols=167 Identities=20% Similarity=0.247 Sum_probs=81.1
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc---ccchh
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA---DCLGK 764 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~---~lls~ 764 (1167)
|.|.+.+|..+.-.+......... ........-+|||+|.||+|||.|.+.++....+ ..+...... .+...
T Consensus 26 i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr----~v~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 26 IYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR----SVYTSGKGSSAAGLTAS 100 (331)
T ss_dssp TTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS----EEEEECCGSTCCCCCEE
T ss_pred CcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCc----eEEECCCCcccCCccce
Confidence 578888776653222111110000 0001233458999999999999999987654321 222222111 11100
Q ss_pred hhc---hHHHHH-HHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc----cC-------CCceE
Q 001066 765 YVG---DAERQL-RLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL----KS-------RGSVV 829 (1167)
Q Consensus 765 ~~g---~~e~~L-~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l----~~-------~~~Vi 829 (1167)
... ..+..+ ...+-. ...+|++|||+|.+.. .....|+..|+.- .. +.+..
T Consensus 101 ~~~d~~~~~~~leaGalvl---ad~GiccIDe~dk~~~-----------~~~~~l~eaMEqq~isi~kagi~~~l~ar~s 166 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGALVL---ADGGICCIDEFDKMKE-----------DDRDALHEAMEQQTISIAKAGIVTTLNARCS 166 (331)
T ss_dssp ECCCGGTSSECEEE-HHHH---CTTSEEEECTTTT--C-----------HHHHHHHHHHHCSCEEECTSSSEEEEE---E
T ss_pred eccccccceeEEeCCchhc---ccCceeeecccccccc-----------hHHHHHHHHHHcCeeccchhhhcccccchhh
Confidence 000 000000 012222 3558999999998864 4466788888752 11 23567
Q ss_pred EEccCCCCC-------------cCCcccCCCCCccccccc-CCCCHHHHHHHHHHhhccC
Q 001066 830 VIGATNRPE-------------AVDPALRRPGRFDREIYF-PLPSMEDRAAILSLHTERW 875 (1167)
Q Consensus 830 VIaTTN~~d-------------~Ld~aLlrpgRF~~~I~~-~~P~~eER~eIL~~~l~~~ 875 (1167)
|+|++|... .+++.|++ ||+..+.+ ..|+.+.-..|....+..+
T Consensus 167 vlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 167 VLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 889988754 46788988 99988665 5666665556666555543
No 347
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.18 E-value=0.0081 Score=68.96 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=52.0
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC---cCC------------cc-cCCC
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE---AVD------------PA-LRRP 847 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d---~Ld------------~a-Llrp 847 (1167)
.+-||||||+|++.+ .-+..++..+..+....++++|.+.+... .+. .. |-.
T Consensus 172 ~~iViiIDdLDR~~~-----------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeK- 239 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSP-----------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEK- 239 (325)
T ss_pred ceEEEEEcchhcCCc-----------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHh-
Confidence 467999999999976 33456666666666667777777765321 111 11 222
Q ss_pred CCcccccccCCCCHHHHHHHHHHhhcc
Q 001066 848 GRFDREIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 848 gRF~~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
-|+..+.+|.|+..+...++...+..
T Consensus 240 -iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 240 -IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred -hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 35667888999999988888777544
No 348
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.16 E-value=0.00037 Score=80.86 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=34.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~ky 1149 (1167)
++||||||||||||||.|||+++. | ..++-+..++|++..
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g-~~V~y~t~~~l~~~l 226 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRG-KSVIYRTADELIEIL 226 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCC-CeEEEEEHHHHHHHH
Confidence 499999999999999999999874 3 578888899988865
No 349
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.14 E-value=0.00043 Score=83.71 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=38.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhccc---ceEEEEeehhhHhhhcccchH
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIG---NVEIQKVDLATISQEGRGDLV 1154 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD~sell~kyiGesE 1154 (1167)
.| ++|||||||||||||.+||+.+.. ...++.+...+++++++....
T Consensus 149 ~~-l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~ 198 (450)
T PRK00149 149 NP-LFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALR 198 (450)
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHH
Confidence 44 999999999999999999998731 156889999999888876643
No 350
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.12 E-value=0.0011 Score=69.11 Aligned_cols=50 Identities=30% Similarity=0.512 Sum_probs=33.3
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG 747 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 747 (1167)
++|.++.+++|..++.. ..-..++.++|+|++|+|||+|+++++..+...
T Consensus 2 fvgR~~e~~~l~~~l~~----------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA----------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGG----------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999887631 112345789999999999999999998887754
No 351
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.11 E-value=0.0034 Score=67.72 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc-----hhh-------------hchHHHHHHHHHHHHH
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL-----GKY-------------VGDAERQLRLLFQVAE 781 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll-----s~~-------------~g~~e~~L~~lF~~A~ 781 (1167)
|+-++|+||+|+||||.+-.||..+......+.++..+....- ..| ..+....+...++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999999999988766667777777553221 111 0012233445555555
Q ss_pred hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC
Q 001066 782 KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV 840 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L 840 (1167)
...-.+||||=..+... ....+..|..+++.......++|+.++...+.+
T Consensus 81 ~~~~D~vlIDT~Gr~~~---------d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPR---------DEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp HTTSSEEEEEE-SSSST---------HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred hcCCCEEEEecCCcchh---------hHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 55567999997654432 224445555555544343345565555544433
No 352
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.10 E-value=0.00091 Score=85.74 Aligned_cols=163 Identities=20% Similarity=0.247 Sum_probs=102.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhh-----chH--HHHHHHHH---H--HHHhcCCcEEE
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYV-----GDA--ERQLRLLF---Q--VAEKCQPSIIF 789 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~-----g~~--e~~L~~lF---~--~A~~~~psILf 789 (1167)
.+|++||||+|||+.+..+|..++ +.++..+..+.-+.+. +.. ...+...| . ........||+
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g-----~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil 433 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELG-----FKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLIL 433 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcc-----cceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEE
Confidence 368999999999999999999988 4566665554433221 111 01122222 0 00111234999
Q ss_pred EcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHH
Q 001066 790 FDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILS 869 (1167)
Q Consensus 790 IDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~ 869 (1167)
+||+|.+.. . ....+..+..++. ...+-+|+++|.........+. +-...|+|+.|+...+..-+.
T Consensus 434 ~devD~~~~-~-------dRg~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~ 499 (871)
T KOG1968|consen 434 MDEVDGMFG-E-------DRGGVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIM 499 (871)
T ss_pred Eeccccccc-h-------hhhhHHHHHHHHH----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhh
Confidence 999998874 1 1233444444444 2233455577765544432322 444789999999999999998
Q ss_pred HhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHH
Q 001066 870 LHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAA 907 (1167)
Q Consensus 870 ~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~ 907 (1167)
.++......+++..++.+...+ ++||++++.+-.
T Consensus 500 si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 500 SICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred hhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 8888877778888999998876 456665555433
No 353
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.10 E-value=0.0018 Score=76.17 Aligned_cols=115 Identities=16% Similarity=0.280 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceE-EEEecccc---------------cchhhhchHHHHHH---HHHHHH
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIA-YFARKGAD---------------CLGKYVGDAERQLR---LLFQVA 780 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~-~~~l~~~~---------------lls~~~g~~e~~L~---~lF~~A 780 (1167)
....||+||||+|||+|++.|++.+......+. ++.+...- +.+.+-......++ .++..|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999998875433333 22221111 11222222333332 333333
Q ss_pred H----hcCCcEEEEcCCCCcCcccCcc--------cccchHHHHHHHHHHhhc---ccCCCceEEEccC
Q 001066 781 E----KCQPSIIFFDEIDGLAPCRTRQ--------QDQTHSSVVSTLLALMDG---LKSRGSVVVIGAT 834 (1167)
Q Consensus 781 ~----~~~psILfIDEID~L~~~~~~~--------~~~~~~~vl~~LL~lLd~---l~~~~~ViVIaTT 834 (1167)
. .....+||||+|+++..+.... .......++..+-.++.. ....+.+.+|+|.
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 3 2366799999999886543211 111223344443334332 3345678888773
No 354
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.10 E-value=0.00036 Score=80.39 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=39.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh--cccch
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE--GRGDL 1153 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k--yiGes 1153 (1167)
++ |||.||||||||.||++||..| | +.|++|.+..-++. ++|..
T Consensus 65 ~~-ilL~G~pGtGKTtla~~lA~~l-~-~~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 65 RR-VMVQGYHGTGKSTHIEQIAARL-N-WPCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred Cc-EEEEeCCCChHHHHHHHHHHHH-C-CCeEEEEecCCCChhhcCCCc
Confidence 44 9999999999999999999999 4 99999999888887 67764
No 355
>PRK09183 transposase/IS protein; Provisional
Probab=97.09 E-value=0.0016 Score=73.17 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=39.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc--ccceEEEEeehhhHhhhccc-chHHHHHHHhhh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSF--IGNVEIQKVDLATISQEGRG-DLVQGLTLLLSM 1163 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l--~G~L~fisvD~sell~kyiG-esE~nvr~iF~~ 1163 (1167)
..++|+|||||||||||.+|++.+ .| ..+.-+.+++|++.+.. ..+.++.++|++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G-~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~ 160 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAG-IKVRFTTAADLLLQLSTAQRQGRYKTTLQR 160 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEeHHHHHHHHHHHHHCCcHHHHHHH
Confidence 359999999999999999998763 13 46666788888866532 222345566654
No 356
>PRK14974 cell division protein FtsY; Provisional
Probab=97.08 E-value=0.0043 Score=72.22 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
+.-++|+|++|+||||++..+|..+......+.++..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 5678899999999999999999887654444444433
No 357
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.07 E-value=0.00041 Score=80.40 Aligned_cols=33 Identities=33% Similarity=0.565 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLAT 1144 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~se 1144 (1167)
+|||||||||||+||+++|+.+ + .+++.+.++.
T Consensus 54 ~ll~GppG~GKT~la~~ia~~l-~-~~~~~~~~~~ 86 (328)
T PRK00080 54 VLLYGPPGLGKTTLANIIANEM-G-VNIRITSGPA 86 (328)
T ss_pred EEEECCCCccHHHHHHHHHHHh-C-CCeEEEeccc
Confidence 8999999999999999999999 4 7777776663
No 358
>PRK06893 DNA replication initiation factor; Validated
Probab=97.06 E-value=0.00037 Score=76.79 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
.|.++|||||||||||||.|||+++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3558999999999999999999876
No 359
>PRK04296 thymidine kinase; Provisional
Probab=97.06 E-value=0.0018 Score=69.35 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~ 754 (1167)
-+|++||+|+|||+++..++..+......+.++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 478899999999999999988875544444444
No 360
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.06 E-value=0.00058 Score=84.38 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=41.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc---ceEEEEeehhhHhhhcccchHHHHHHHh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIG---NVEIQKVDLATISQEGRGDLVQGLTLLL 1161 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD~sell~kyiGesE~nvr~iF 1161 (1167)
|+|||++|+|||||+.||++.+.. ...++.+...+++++|+...-.+...-|
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f 371 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSF 371 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999998720 1588999999999999876555443334
No 361
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.05 E-value=0.00065 Score=66.64 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=35.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc-cceEEEEeehhhHhhhcccc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI-GNVEIQKVDLATISQEGRGD 1152 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~-G~L~fisvD~sell~kyiGe 1152 (1167)
.++++||||||||+||+.++..+. -...++.++.++....+...
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 65 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA 65 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHH
Confidence 399999999999999999999871 01678899998887766544
No 362
>PRK06921 hypothetical protein; Provisional
Probab=97.05 E-value=0.00068 Score=76.50 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=33.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhccc--ceEEEEeehhhHhhhc
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIG--NVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G--~L~fisvD~sell~ky 1149 (1167)
.+++|+|||||||||||.|||+++.. ...++-+..++++...
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l 161 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL 161 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH
Confidence 34999999999999999999998741 1566777777776643
No 363
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.05 E-value=0.0031 Score=69.37 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=32.1
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEe
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFAR 756 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l 756 (1167)
|+.+..-++|.|+||+|||+++..+|...... ...+-|+++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 67777789999999999999999988776554 445555554
No 364
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.05 E-value=0.0018 Score=76.34 Aligned_cols=81 Identities=23% Similarity=0.466 Sum_probs=53.5
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh------hc--------hHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY------VG--------DAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~------~g--------~~e~~L~~lF~~A~ 781 (1167)
|+.+..-+||+|+||+|||+|+..+|..+......+-|+.. ....... ++ ..+..+..++..+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~--EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG--EESPEQIKLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC--CcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 56777789999999999999999999877654333334332 2111110 00 01223455666666
Q ss_pred hcCCcEEEEcCCCCcCc
Q 001066 782 KCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~ 798 (1167)
...|.+|+||.|..+..
T Consensus 156 ~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 156 ELKPDLVIIDSIQTVYS 172 (372)
T ss_pred hcCCcEEEEcchHHhhc
Confidence 77899999999998864
No 365
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.02 E-value=0.00077 Score=72.57 Aligned_cols=103 Identities=22% Similarity=0.340 Sum_probs=51.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc--chhhhchHHHHHHHHHHHHH---------hcCCcEEE
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC--LGKYVGDAERQLRLLFQVAE---------KCQPSIIF 789 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l--ls~~~g~~e~~L~~lF~~A~---------~~~psILf 789 (1167)
+-++|.||||||||++++.++..+......+.++....... +....+.....+..++.... .....+||
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 45788899999999999999887765443333332211100 00000000011111111110 12347999
Q ss_pred EcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 790 FDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 790 IDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
|||+..+.. ..+..|+..+.. ...+++++|-.+.
T Consensus 99 VDEasmv~~-----------~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVDS-----------RQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-BH-----------HHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EecccccCH-----------HHHHHHHHHHHh--cCCEEEEECCcch
Confidence 999987763 334444444432 2456788876654
No 366
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0067 Score=71.54 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=60.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc-----chhh---------hchHHHHHHHHHHHHHh-cC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC-----LGKY---------VGDAERQLRLLFQVAEK-CQ 784 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l-----ls~~---------~g~~e~~L~~lF~~A~~-~~ 784 (1167)
+..|+|.||+|+||||++..||..+......+.++..+.... +..| .......+...+..+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 467999999999999999999998875555566666544321 1111 01122334444444432 24
Q ss_pred CcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 785 PSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 785 psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
..+||||-..+... ....+..|...++...+...++|+.+|
T Consensus 321 ~DvVLIDTaGRs~k---------d~~lm~EL~~~lk~~~PdevlLVLsAT 361 (436)
T PRK11889 321 VDYILIDTAGKNYR---------ASETVEEMIETMGQVEPDYICLTLSAS 361 (436)
T ss_pred CCEEEEeCccccCc---------CHHHHHHHHHHHhhcCCCeEEEEECCc
Confidence 57888887655431 123455555555544333334555443
No 367
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.01 E-value=0.00053 Score=78.23 Aligned_cols=32 Identities=28% Similarity=0.542 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLA 1143 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~s 1143 (1167)
+|||||||||||+||++||+.+ + ..+..+.++
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~-~-~~~~~~~~~ 64 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEM-G-VNLKITSGP 64 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CCEEEeccc
Confidence 8999999999999999999999 3 666666554
No 368
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.00 E-value=0.0006 Score=81.30 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=36.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc---ceEEEEeehhhHhhhcccc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIG---NVEIQKVDLATISQEGRGD 1152 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD~sell~kyiGe 1152 (1167)
+||||||||||||||.+|++++.. +..++.+...++++.++..
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~ 184 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNA 184 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHH
Confidence 999999999999999999998731 1578889999988877654
No 369
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.00 E-value=0.0029 Score=68.83 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=63.8
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC------CceEEEEeccc---ccchhhh-------------------c
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD------KRIAYFARKGA---DCLGKYV-------------------G 767 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~------~~i~~~~l~~~---~lls~~~-------------------g 767 (1167)
|++...-+.|+||||+|||+++..+|....... ..+-|+..... ..+.... .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 677778899999999999999999987754332 23333332211 0000000 0
Q ss_pred hHH---HHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccc--ccchHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 768 DAE---RQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ--DQTHSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 768 ~~e---~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~--~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
..+ ..+..+........+.+|+||-|..+........ .......+..++..|..+....++.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111 1122222212245778999999998864221111 011224455566666665445556666554
No 370
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.00 E-value=0.00059 Score=75.98 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=46.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchH---HHHHH
Q 001066 1106 SGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLV---QGLTL 1159 (1167)
Q Consensus 1106 ~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE---~nvr~ 1159 (1167)
.+-.+||.||||||||-||=+|+++|..++.|-.+=+||+.|--+--+| +|.||
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvLmenfRR 119 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVLMENFRR 119 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHHHHHHHH
Confidence 3445999999999999999999999976799999999999998887776 45554
No 371
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.99 E-value=0.00076 Score=80.68 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLA 1143 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~s 1143 (1167)
.+||+||||||||+||++||+.+ +..|+.+..+
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~--~~~~~~l~a~ 70 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGAT--DAPFEALSAV 70 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCCEEEEecc
Confidence 49999999999999999999998 3788888764
No 372
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00069 Score=79.02 Aligned_cols=53 Identities=32% Similarity=0.426 Sum_probs=45.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh-cccchHHHHH-HHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE-GRGDLVQGLT-LLLSM 1163 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k-yiGesE~nvr-~iF~~ 1163 (1167)
.|||.||||+|||+||+.||+.| ++.|.=-|--+|-|. |+||-.+.|- ++++.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~l--dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~ 282 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVL--DVPFAICDCTTLTQAGYVGEDVESVIQKLLQE 282 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHh--CCCeEEecccchhhcccccccHHHHHHHHHHH
Confidence 49999999999999999999999 699999999999986 8998766553 44443
No 373
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.98 E-value=0.0044 Score=73.91 Aligned_cols=122 Identities=20% Similarity=0.182 Sum_probs=66.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccC
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRT 801 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~ 801 (1167)
.++|+||.+|||||+++.+....... ++.++..+.......- ......+..+.......||||||+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~--- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD--- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh---
Confidence 78999999999999998877765422 2222222222211111 1111222222222457999999998753
Q ss_pred cccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC--CcccCCCCCcccccccCCCCHHHHHHH
Q 001066 802 RQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV--DPALRRPGRFDREIYFPLPSMEDRAAI 867 (1167)
Q Consensus 802 ~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L--d~aLlrpgRF~~~I~~~~P~~eER~eI 867 (1167)
....+-.+.+.... .+++.+++...-.. ...| +||. ..+.+.+.+..|...+
T Consensus 109 ---------W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L--~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 109 ---------WERALKYLYDRGNL--DVLITGSSSSLLSKEISESL--AGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred ---------HHHHHHHHHccccc--eEEEECCchhhhccchhhhc--CCCc-eeEEECCCCHHHHHhh
Confidence 12223233332211 45665554433222 2233 5686 7888888899998753
No 374
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.98 E-value=0.0033 Score=68.28 Aligned_cols=40 Identities=33% Similarity=0.438 Sum_probs=31.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEE
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFA 755 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~ 755 (1167)
|++....++|+|+||+|||+++..+|..+......+.|+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 6777788999999999999999999988754433444443
No 375
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.98 E-value=0.0079 Score=72.40 Aligned_cols=107 Identities=20% Similarity=0.267 Sum_probs=60.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc-----chh--------hh-----chHHHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC-----LGK--------YV-----GDAERQLRLLFQVA 780 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l-----ls~--------~~-----g~~e~~L~~lF~~A 780 (1167)
.|..++|+|++|+||||++..+|..+......+.++..+.... +.. +. .+....+...+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 4677999999999999999999998876555566655544211 000 01 11122234444444
Q ss_pred HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 781 EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 781 ~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
.. ..+|+||...++.. ....+.+|..+.....+...++|+-++..
T Consensus 174 ~~--~DvVIIDTAGr~~~---------d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 174 KK--ADVIIVDTAGRHAL---------EEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred hc--CCEEEEECCCcccc---------hHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 43 38999998766542 12333444433333334444555554443
No 376
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.98 E-value=0.004 Score=69.72 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=25.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcC
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARG 747 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 747 (1167)
....++|.||+|+|||+|++.|++.+...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 45679999999999999999999987654
No 377
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.97 E-value=0.00075 Score=68.66 Aligned_cols=39 Identities=18% Similarity=0.440 Sum_probs=31.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGD 1152 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGe 1152 (1167)
|+|+||||+|||.||+.||..| | +.++..| .++-...|.
T Consensus 2 i~l~G~~GsGKstla~~la~~l-~-~~~~~~d--~~~~~~~~~ 40 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL-G-LPFVDLD--ELIEQRAGM 40 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh-C-CCEEEch--HHHHHHcCC
Confidence 8999999999999999999988 4 7777655 666665554
No 378
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.96 E-value=0.00077 Score=73.21 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=32.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc-cceEEEEeehhhHhhhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI-GNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~-G~L~fisvD~sell~ky 1149 (1167)
+|||||||||||+||+++++.+. ....++-++.+++.++.
T Consensus 41 lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD 81 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH
Confidence 99999999999999999998762 01568888988887653
No 379
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.95 E-value=0.0025 Score=67.76 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=44.4
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh--hchHHHHHHHHHHHHHhcCCcEEEEcCCC
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY--VGDAERQLRLLFQVAEKCQPSIIFFDEID 794 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~--~g~~e~~L~~lF~~A~~~~psILfIDEID 794 (1167)
+.+...+.|.||.|+|||||++.|+..+......+.+-.... ..+... ... ..+-+..+..+....|.++++||--
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-~~~~q~~~LSg-Gq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP-VYKPQYIDLSG-GELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE-EEEcccCCCCH-HHHHHHHHHHHHhcCCCEEEEECCc
Confidence 345567889999999999999999987543222222110000 000000 111 1233344555556789999999965
Q ss_pred C
Q 001066 795 G 795 (1167)
Q Consensus 795 ~ 795 (1167)
.
T Consensus 100 s 100 (177)
T cd03222 100 A 100 (177)
T ss_pred c
Confidence 3
No 380
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.95 E-value=0.00054 Score=77.17 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhccc
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIG 1133 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G 1133 (1167)
|-+|||||||||||--|.++|.+|.|
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 55899999999999999999999864
No 381
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.94 E-value=0.004 Score=75.30 Aligned_cols=81 Identities=26% Similarity=0.510 Sum_probs=53.1
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh------hc--------hHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY------VG--------DAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~------~g--------~~e~~L~~lF~~A~ 781 (1167)
|+.+...+||+|+||+|||+|+..+|..+......+-|+. ..+..... ++ ..+..+..++..+.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs--~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS--GEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE--ccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 6677778999999999999999999987753333333333 22221111 00 01122455666666
Q ss_pred hcCCcEEEEcCCCCcCc
Q 001066 782 KCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~ 798 (1167)
...|.+|+||.|..+..
T Consensus 154 ~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 154 EEKPDLVVIDSIQTMYS 170 (446)
T ss_pred hhCCCEEEEechhhhcc
Confidence 67899999999998864
No 382
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.94 E-value=0.0028 Score=69.46 Aligned_cols=120 Identities=15% Similarity=0.173 Sum_probs=64.0
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC------CceEEEEecccccchhh------------------------
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD------KRIAYFARKGADCLGKY------------------------ 765 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~------~~i~~~~l~~~~lls~~------------------------ 765 (1167)
|++...-+.|+||||+|||+++..+|....... ..+-|+..........+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 677777899999999999999999986543221 22333332211000000
Q ss_pred -hchHHHHHHHHHHHHHhc-CCcEEEEcCCCCcCcccCcccc--cchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 766 -VGDAERQLRLLFQVAEKC-QPSIIFFDEIDGLAPCRTRQQD--QTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 766 -~g~~e~~L~~lF~~A~~~-~psILfIDEID~L~~~~~~~~~--~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
..+....+..+....... .+.+|+||-|..+......... ......+..++..|..+....++.||.|..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 001111222232333445 7899999999977531111111 122345556666666655555666665543
No 383
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.94 E-value=0.0039 Score=62.52 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=40.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK 749 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~ 749 (1167)
.|.|+.-+.+.+..+|...+..+ .-..|.-+.|+|+||||||++++.||+.+.....
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~ 82 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGM 82 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhccc
Confidence 35888888888888776543321 1123344558999999999999999999766543
No 384
>PRK05642 DNA replication initiation factor; Validated
Probab=96.93 E-value=0.0011 Score=73.46 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=31.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~k 1148 (1167)
++||||+||||||||.++++++. | ..++-+.+.++++.
T Consensus 48 l~l~G~~G~GKTHLl~a~~~~~~~~~-~~v~y~~~~~~~~~ 87 (234)
T PRK05642 48 IYLWGKDGVGRSHLLQAACLRFEQRG-EPAVYLPLAELLDR 87 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEeeHHHHHhh
Confidence 89999999999999999998653 2 46677888887764
No 385
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.007 Score=71.80 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhc----CCCceEEEEecccccch-----hh---------hchHHHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCAR----GDKRIAYFARKGADCLG-----KY---------VGDAERQLRLLFQVA 780 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~----~~~~i~~~~l~~~~lls-----~~---------~g~~e~~L~~lF~~A 780 (1167)
.+..++|+||+|+||||++..+|..+.. ....+.++..++..... .| .......+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3567999999999999999999987652 23456666666532211 11 011112233333332
Q ss_pred HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCC-CceEEEccCCCCCcCC
Q 001066 781 EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSR-GSVVVIGATNRPEAVD 841 (1167)
Q Consensus 781 ~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~-~~ViVIaTTN~~d~Ld 841 (1167)
....+|+||.+..+.. ....+..+..+++..... ..++|+.+|.....+.
T Consensus 253 --~~~DlVLIDTaGr~~~---------~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK---------DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred --CCCCEEEEcCCCCCcc---------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 4568999999987642 112245555555554333 3566776666544443
No 386
>PHA00729 NTP-binding motif containing protein
Probab=96.91 E-value=0.00085 Score=73.67 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=30.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc-c--------------eEEEEeehhhHhhhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIG-N--------------VEIQKVDLATISQEG 1149 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G-~--------------L~fisvD~sell~ky 1149 (1167)
|+|+|+||||||+||.+||+.+ + + ...+-+|.+.|+.+-
T Consensus 20 IlItG~pGvGKT~LA~aLa~~l-~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L 73 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARDV-FWKLNNLSTKDDAWQYVQNSYFFELPDALEKI 73 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HhhcccccchhhHHhcCCcEEEEEHHHHHHHH
Confidence 8999999999999999999986 2 0 124566777766554
No 387
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.91 E-value=0.00063 Score=68.30 Aligned_cols=31 Identities=35% Similarity=0.760 Sum_probs=23.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
+||.|+||+|||.||++||+.+ | +.|.+|-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~-~-~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL-G-LSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT-T---EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHc-C-CceeEEEe
Confidence 7999999999999999999999 4 89999976
No 388
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.90 E-value=0.0018 Score=71.05 Aligned_cols=23 Identities=48% Similarity=0.777 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIG 742 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~ 742 (1167)
+..+||||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 45699999999999999999863
No 389
>PRK09354 recA recombinase A; Provisional
Probab=96.90 E-value=0.0039 Score=72.68 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=64.8
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc--------------cccchhhhchHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG--------------ADCLGKYVGDAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~--------------~~lls~~~g~~e~~L~~lF~~A~ 781 (1167)
|++..+.++|+||||||||+|+-.++.........+.|+.... ..++-......+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 6788888999999999999999988776554333333332211 11111111123333433334445
Q ss_pred hcCCcEEEEcCCCCcCccc-C--ccccc---chHHHHHHHHHHhhcccCCCceEEEcc
Q 001066 782 KCQPSIIFFDEIDGLAPCR-T--RQQDQ---THSSVVSTLLALMDGLKSRGSVVVIGA 833 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~~~-~--~~~~~---~~~~vl~~LL~lLd~l~~~~~ViVIaT 833 (1167)
...+.+|+||-|-.|.+.. - ..++. ...+.+..++..|.......++.+|.|
T Consensus 136 s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 136 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred cCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 5678999999999887521 0 01111 223444444444444434455666655
No 390
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.0035 Score=68.28 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=48.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCC---ceEEEEeccc-ccchhhhc-------------hHHHHHHHHHHHHHh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDK---RIAYFARKGA-DCLGKYVG-------------DAERQLRLLFQVAEK 782 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~---~i~~~~l~~~-~lls~~~g-------------~~e~~L~~lF~~A~~ 782 (1167)
..+.||.||||+||||+.+-||+.+..... ...+..++.. ++.+-..+ +...+-..++...+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 456899999999999999999998875521 1122222221 12111111 112223445556677
Q ss_pred cCCcEEEEcCCCCcC
Q 001066 783 CQPSIIFFDEIDGLA 797 (1167)
Q Consensus 783 ~~psILfIDEID~L~ 797 (1167)
+.|.||++|||.+..
T Consensus 217 m~PEViIvDEIGt~~ 231 (308)
T COG3854 217 MSPEVIIVDEIGTEE 231 (308)
T ss_pred cCCcEEEEeccccHH
Confidence 899999999998654
No 391
>PRK06526 transposase; Provisional
Probab=96.90 E-value=0.00055 Score=76.71 Aligned_cols=41 Identities=27% Similarity=0.262 Sum_probs=32.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhhhc
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~ky 1149 (1167)
.++||+||||||||+||.+|+..+. | ..++-+.++++++..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g-~~v~f~t~~~l~~~l 141 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAG-HRVLFATAAQWVARL 141 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCC-CchhhhhHHHHHHHH
Confidence 3599999999999999999998763 3 455557788877765
No 392
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.86 E-value=0.001 Score=68.79 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ky 1149 (1167)
.|+|+||||+|||.+|++||..| | +.|+.. ..++.+.
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l-~-~~~~d~--d~~~~~~ 42 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRL-G-YDFIDT--DHLIEAR 42 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-C-CCEEEC--hHHHHHH
Confidence 49999999999999999999998 4 677754 4555443
No 393
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.84 E-value=0.00097 Score=77.71 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=44.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccce------EEEEeeh----hhHhhhcccchHHHHHHHhhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNV------EIQKVDL----ATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L------~fisvD~----sell~kyiGesE~nvr~iF~~ 1163 (1167)
+||+||||+|||.||++||..|. .. .+|.|.+ |.+..+..|=.=+.+|+.|.+
T Consensus 81 l~L~GPPGsGKStla~~La~~l~-~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 81 LYLLGPVGGGKSSLVECLKRGLE-EYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh-hhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHHHH
Confidence 89999999999999999999993 33 8999999 888888777777777776643
No 394
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.82 E-value=0.0011 Score=69.71 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=21.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+|+|+|+||+||||+++.++..+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh
Confidence 489999999999999999999884
No 395
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.82 E-value=0.0012 Score=76.18 Aligned_cols=39 Identities=23% Similarity=0.467 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcccc---eEEEEeehhhHh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIGN---VEIQKVDLATIS 1146 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G~---L~fisvD~sell 1146 (1167)
|.+|||||||||||+||+++|+.+.+. .+++.++.+.+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 469999999999999999999988421 246777877654
No 396
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.82 E-value=0.0012 Score=64.43 Aligned_cols=30 Identities=20% Similarity=0.519 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec
Q 001066 723 VLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK 757 (1167)
Q Consensus 723 VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~ 757 (1167)
|+|.|+||+||||+|+.||..++ +.++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~-----~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG-----FPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT-----CEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC-----CeEEEec
Confidence 78999999999999999999886 5555543
No 397
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.0031 Score=67.66 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcCC
Q 001066 723 VLLHGHPGTGKTLVVRALIGSCARGD 748 (1167)
Q Consensus 723 VLL~GPpGTGKTtLAraLA~~l~~~~ 748 (1167)
|+|+|+||+|||++|+.+|+.+....
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhh
Confidence 78999999999999999999997654
No 398
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.001 Score=67.89 Aligned_cols=38 Identities=21% Similarity=0.516 Sum_probs=31.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh
Q 001066 1106 SGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ 1147 (1167)
Q Consensus 1106 ~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ 1147 (1167)
-+|.||++|-||||||.||++||..+ .|-.|.++.++-
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~----~~~~i~isd~vk 43 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT----GLEYIEISDLVK 43 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh----CCceEehhhHHh
Confidence 47889999999999999999999855 366677777764
No 399
>PLN03025 replication factor C subunit; Provisional
Probab=96.80 E-value=0.0009 Score=77.31 Aligned_cols=36 Identities=22% Similarity=0.529 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcccc---eEEEEeehh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIGN---VEIQKVDLA 1143 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G~---L~fisvD~s 1143 (1167)
|.+|||||||||||++|.+||+++.|. .+++.++.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 459999999999999999999987431 235555544
No 400
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.80 E-value=0.0081 Score=67.56 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=32.2
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK 757 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~ 757 (1167)
|+++...+|++|+||+|||+++..+|.........+.|+...
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 677888899999999999999999877654444445555543
No 401
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.80 E-value=0.0013 Score=71.86 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=29.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc-cceEEEEeehhhHh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI-GNVEIQKVDLATIS 1146 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~-G~L~fisvD~sell 1146 (1167)
++|+||||||||+||.+|++.+. ....++.++..++.
T Consensus 45 ~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 45 FYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 99999999999999999999651 11467777776653
No 402
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.80 E-value=0.0065 Score=58.87 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
+++|+||+|+|||+++..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 6899999999999999988887764
No 403
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.80 E-value=0.0023 Score=68.94 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=43.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe-cccccc--------h-hhhchHHHHHHHHHHHHHhcCCcEEEEc
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR-KGADCL--------G-KYVGDAERQLRLLFQVAEKCQPSIIFFD 791 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l-~~~~ll--------s-~~~g~~e~~L~~lF~~A~~~~psILfID 791 (1167)
-++|.||+|+||||++++++..+...... .++.+ +..++. . .-++.....+...+..+....|.+|++|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~-~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g 81 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTH-HILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG 81 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCc-EEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence 37889999999999999999887643211 11111 111111 0 0011112234555666666789999999
Q ss_pred CCC
Q 001066 792 EID 794 (1167)
Q Consensus 792 EID 794 (1167)
|+-
T Consensus 82 Eir 84 (198)
T cd01131 82 EMR 84 (198)
T ss_pred CCC
Confidence 973
No 404
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.79 E-value=0.0016 Score=79.62 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=44.1
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
.-|+++.|+++++++|.+.+... ...++ .....++|.||||+|||+||+.||..+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~A------a~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHA------AQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHH------HHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 45788999999999999887432 12222 23457889999999999999999998764
No 405
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.77 E-value=0.0012 Score=79.58 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=35.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhhhcccc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQEGRGD 1152 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~kyiGe 1152 (1167)
++||||||+||||||.+|++.+. | ..++-+....+.++++..
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~-~~v~yi~~~~f~~~~~~~ 187 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESG-GKILYVRSELFTEHLVSA 187 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEeeHHHHHHHHHHH
Confidence 89999999999999999999762 2 677888888888777643
No 406
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.77 E-value=0.0035 Score=70.26 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEe
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFAR 756 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l 756 (1167)
|+.+...++|.|+||+|||+++..+|..+... ...+-|+++
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 56667789999999999999999998876543 444555554
No 407
>PRK04195 replication factor C large subunit; Provisional
Probab=96.76 E-value=0.0011 Score=80.97 Aligned_cols=33 Identities=30% Similarity=0.649 Sum_probs=30.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLAT 1144 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~se 1144 (1167)
+|||||||||||+||.+||+++ | .+++.++.+.
T Consensus 42 lLL~GppG~GKTtla~ala~el-~-~~~ielnasd 74 (482)
T PRK04195 42 LLLYGPPGVGKTSLAHALANDY-G-WEVIELNASD 74 (482)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-C-CCEEEEcccc
Confidence 9999999999999999999999 4 8888887764
No 408
>PRK08118 topology modulation protein; Reviewed
Probab=96.76 E-value=0.001 Score=69.81 Aligned_cols=31 Identities=29% Similarity=0.572 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
+|++.||||+|||.||+.|+..+ + +.++.+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-~-~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-N-IPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-CCceecc
Confidence 59999999999999999999999 3 8888888
No 409
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.75 E-value=0.023 Score=64.46 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=31.7
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..+..++|+||+|+||||++..+|..+......+.++..+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 34567888999999999999999998866555566666553
No 410
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.75 E-value=0.0085 Score=66.35 Aligned_cols=29 Identities=34% Similarity=0.603 Sum_probs=25.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
|+++...+||+||||+|||+++..++...
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~ 45 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNG 45 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 78888899999999999999998876653
No 411
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0034 Score=73.94 Aligned_cols=114 Identities=21% Similarity=0.318 Sum_probs=61.2
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcC--CCceEEEEeccccc-----ch---hhhch------HHHHHHHHHHHHH
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARG--DKRIAYFARKGADC-----LG---KYVGD------AERQLRLLFQVAE 781 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~--~~~i~~~~l~~~~l-----ls---~~~g~------~e~~L~~lF~~A~ 781 (1167)
.....++|+||+|+||||++..||..+... ...+.++..+.... +. .+.+- ....+...+ ..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~ 212 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AE 212 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HH
Confidence 445679999999999999999999876422 23455555444311 10 00010 011122222 22
Q ss_pred hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-CCCceEEEccCCCCCcCCcc
Q 001066 782 KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-SRGSVVVIGATNRPEAVDPA 843 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-~~~~ViVIaTTN~~d~Ld~a 843 (1167)
.....+||||....... ...+...+..|.... ....++||.+|+..+.+...
T Consensus 213 l~~~DlVLIDTaG~~~~----------d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQR----------DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred hcCCCEEEEcCCCCCcc----------cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 34568999999864432 122333344443322 22347777777766555443
No 412
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.73 E-value=0.007 Score=65.41 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=44.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhh--cCCCce-----------EEEEecccccc----hhhhchHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCA--RGDKRI-----------AYFARKGADCL----GKYVGDAERQLRLLFQ 778 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~--~~~~~i-----------~~~~l~~~~ll----s~~~g~~e~~L~~lF~ 778 (1167)
.+....-++|+||+|+||||+++.|+...- .....+ .|..+...+-+ +.+..+. ..+..+++
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~-~~~~~iL~ 99 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAEL-RRLKEIVE 99 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHH-HHHHHHHH
Confidence 334456789999999999999999986541 111111 11111111111 1111111 34566666
Q ss_pred HHHhcCCcEEEEcCCC
Q 001066 779 VAEKCQPSIIFFDEID 794 (1167)
Q Consensus 779 ~A~~~~psILfIDEID 794 (1167)
.+....|.+|++||.-
T Consensus 100 ~~~~~~p~llllDEp~ 115 (199)
T cd03283 100 KAKKGEPVLFLLDEIF 115 (199)
T ss_pred hccCCCCeEEEEeccc
Confidence 6554579999999965
No 413
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.73 E-value=0.0078 Score=62.76 Aligned_cols=112 Identities=19% Similarity=0.198 Sum_probs=59.7
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE--Eecc---cccchh---hhc--hHHHHHHHHHHHHHhcCC
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF--ARKG---ADCLGK---YVG--DAERQLRLLFQVAEKCQP 785 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~--~l~~---~~lls~---~~g--~~e~~L~~lF~~A~~~~p 785 (1167)
.+.+...+.|.||+|+|||||++.|+.........+.+- .+.. ...... |+. ....+.+..+..+....|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA 101 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC
Confidence 345667799999999999999999988654222111111 1100 000000 110 112233445566667789
Q ss_pred cEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC
Q 001066 786 SIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE 838 (1167)
Q Consensus 786 sILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d 838 (1167)
.||++||--.-.. ......+..+|..+...+ ..+|.+|+..+
T Consensus 102 ~illlDEP~~~LD----------~~~~~~l~~~l~~~~~~~-~tiii~sh~~~ 143 (163)
T cd03216 102 RLLILDEPTAALT----------PAEVERLFKVIRRLRAQG-VAVIFISHRLD 143 (163)
T ss_pred CEEEEECCCcCCC----------HHHHHHHHHHHHHHHHCC-CEEEEEeCCHH
Confidence 9999999643221 123334555554443333 34444666554
No 414
>PRK05973 replicative DNA helicase; Provisional
Probab=96.72 E-value=0.013 Score=65.17 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=32.0
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
|+++...+||.|+||+|||+++-.+|.........+-|+++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 67788889999999999999999988776544444555554
No 415
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.71 E-value=0.0014 Score=84.12 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=45.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHh---------hhcccchHHHHHHHhhh
Q 001066 1106 SGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATIS---------QEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1106 ~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell---------~kyiGesE~nvr~iF~~ 1163 (1167)
.++.++|+||||||||.+|++||+.+ + .+|+++.+..+- ..|+|...-.+.+-|.+
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l-~-~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~ 412 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKAT-G-RKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAK 412 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-C-CCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHh
Confidence 45669999999999999999999999 3 899988876643 36888887777776665
No 416
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.70 E-value=0.0013 Score=79.35 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=35.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc---ceEEEEeehhhHhhhccc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIG---NVEIQKVDLATISQEGRG 1151 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD~sell~kyiG 1151 (1167)
++||||||+||||||.+||+.+.. +..++-+...++++.++.
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~ 177 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD 177 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH
Confidence 999999999999999999998631 157888888888887753
No 417
>PHA02244 ATPase-like protein
Probab=96.69 E-value=0.0014 Score=76.48 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
+||+||||||||+||++||+.+ + ..|+.+.
T Consensus 122 VLL~GppGtGKTtLA~aLA~~l-g-~pfv~In 151 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEAL-D-LDFYFMN 151 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CCEEEEe
Confidence 9999999999999999999998 3 7888776
No 418
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.69 E-value=0.0025 Score=63.81 Aligned_cols=22 Identities=14% Similarity=0.378 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
+.|.||||||||++|+.||+.|
T Consensus 56 lSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred EEeecCCCCcHHHHHHHHHHHH
Confidence 4699999999999999999986
No 419
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.68 E-value=0.0022 Score=73.87 Aligned_cols=109 Identities=22% Similarity=0.387 Sum_probs=58.7
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-CceEEEEecc--cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCC
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGD-KRIAYFARKG--ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEID 794 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-~~i~~~~l~~--~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID 794 (1167)
.++++++|||+-|.|||.|.-.....+.... .+++|..... -.-+....|+. .-+..+-.+. ...--||+|||++
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~-~~~~~vLCfDEF~ 140 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADEL-AAETRVLCFDEFE 140 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHH-HhcCCEEEeeeee
Confidence 5678999999999999999998877765322 3333321100 00001111221 1111111111 1244699999987
Q ss_pred CcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC-CCcC
Q 001066 795 GLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR-PEAV 840 (1167)
Q Consensus 795 ~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~-~d~L 840 (1167)
.- +-...-++..|+..|= ..+|++++|+|. |+.|
T Consensus 141 Vt--------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 141 VT--------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNL 175 (367)
T ss_pred ec--------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHh
Confidence 32 1222345555554432 247888899987 4443
No 420
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.67 E-value=0.0029 Score=73.93 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=45.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe-cccccc---------hhhhchHHHHHHHHHHHHHhcCCcEEE
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR-KGADCL---------GKYVGDAERQLRLLFQVAEKCQPSIIF 789 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l-~~~~ll---------s~~~g~~e~~L~~lF~~A~~~~psILf 789 (1167)
...+||.||+|+||||++++++..+..... ..++.+ +..++. ..-.+.....+...+..+.+..|.+|+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~-~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAA-GHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCC-CEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 346899999999999999999987764321 122222 111111 001121112345566667778999999
Q ss_pred EcCCC
Q 001066 790 FDEID 794 (1167)
Q Consensus 790 IDEID 794 (1167)
+||+-
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99984
No 421
>PRK14530 adenylate kinase; Provisional
Probab=96.66 E-value=0.0018 Score=70.47 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=28.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcccceEEEEe
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKV 1140 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisv 1140 (1167)
+|+|+|.||||+|||.+|+.||..+ | +.+++.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~-~-~~~i~~ 34 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF-G-VEHVTT 34 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-C-CeEEec
Confidence 4679999999999999999999999 5 888855
No 422
>PRK13947 shikimate kinase; Provisional
Probab=96.64 E-value=0.002 Score=66.99 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=32.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccch
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDL 1153 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGes 1153 (1167)
|++.|+||+|||.+|+.||+.| | +.|+..| .++.+..|.+
T Consensus 4 I~l~G~~GsGKst~a~~La~~l-g-~~~id~d--~~~~~~~g~~ 43 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTL-S-FGFIDTD--KEIEKMTGMT 43 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh-C-CCEEECc--hhhhhhcCCc
Confidence 8999999999999999999999 5 8886665 4565555543
No 423
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.63 E-value=0.0023 Score=64.23 Aligned_cols=38 Identities=29% Similarity=0.530 Sum_probs=30.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhccc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRG 1151 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiG 1151 (1167)
|+++||||+|||++|+.|+..+ | ..-|+..++..+..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~-~---~~~i~~D~~~~~~~~ 39 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL-G---AVVISQDEIRRRLAG 39 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS-T---EEEEEHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHC-C---CEEEeHHHHHHHHcc
Confidence 7999999999999999999977 4 555666666665544
No 424
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.62 E-value=0.0016 Score=72.10 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc---ceEEEEee
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG---NVEIQKVD 1141 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD 1141 (1167)
.++|||||||||||||.++++.+.. ++.+++++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 4999999999999999999997620 13565554
No 425
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.62 E-value=0.023 Score=74.32 Aligned_cols=159 Identities=14% Similarity=0.230 Sum_probs=85.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc-hhh----hch-----------------------HHHH
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL-GKY----VGD-----------------------AERQ 772 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll-s~~----~g~-----------------------~e~~ 772 (1167)
+-++|+||+|.|||+++...+.... .+..++++..+-- ..+ ... ....
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~----~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN----NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSL 108 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC----CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHH
Confidence 4589999999999999999876432 3556666433211 000 000 0112
Q ss_pred HHHHHHHHHh-cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCC-cccCCCCCc
Q 001066 773 LRLLFQVAEK-CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVD-PALRRPGRF 850 (1167)
Q Consensus 773 L~~lF~~A~~-~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld-~aLlrpgRF 850 (1167)
+..++..... ..|.+|+|||+|.+.. ..+...|..++.... +++.+|.++.....++ ..+...+.+
T Consensus 109 ~~~~~~~l~~~~~~~~lvlDD~h~~~~----------~~~~~~l~~l~~~~~--~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 109 FAQLFIELADWHQPLYLVIDDYHLITN----------PEIHEAMRFFLRHQP--ENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcCcCCC----------hHHHHHHHHHHHhCC--CCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 2233333332 5789999999998753 122223334444432 3333333554321121 111111111
Q ss_pred ccccccC--CCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHH
Q 001066 851 DREIYFP--LPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQ 900 (1167)
Q Consensus 851 ~~~I~~~--~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~ 900 (1167)
..|... ..+.++..++|...+. ..++...+..|...|.|.. ..|.
T Consensus 177 -~~l~~~~l~f~~~e~~~ll~~~~~---~~~~~~~~~~l~~~t~Gwp-~~l~ 223 (903)
T PRK04841 177 -LEIGSQQLAFDHQEAQQFFDQRLS---SPIEAAESSRLCDDVEGWA-TALQ 223 (903)
T ss_pred -eecCHHhCCCCHHHHHHHHHhccC---CCCCHHHHHHHHHHhCChH-HHHH
Confidence 233333 5688888888875543 3457788889999999854 3344
No 426
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.59 E-value=0.0017 Score=75.27 Aligned_cols=34 Identities=32% Similarity=0.678 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehh
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLA 1143 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~s 1143 (1167)
++ +||-||||||||+||+++|..+ | ++|++|-+-
T Consensus 44 ~~-vll~G~PG~gKT~la~~lA~~l-~-~~~~~i~~t 77 (329)
T COG0714 44 GH-VLLEGPPGVGKTLLARALARAL-G-LPFVRIQCT 77 (329)
T ss_pred CC-EEEECCCCccHHHHHHHHHHHh-C-CCeEEEecC
Confidence 44 9999999999999999999999 4 889988664
No 427
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.58 E-value=0.0065 Score=71.21 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=44.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh--hcCCCceEEEEecccccchhhhchHHH------------HHHHHHHHHH-----h
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSC--ARGDKRIAYFARKGADCLGKYVGDAER------------QLRLLFQVAE-----K 782 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l--~~~~~~i~~~~l~~~~lls~~~g~~e~------------~L~~lF~~A~-----~ 782 (1167)
-+++.|.||||||.||-.+|..+ ........++..+... .......... .....+.... .
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l-~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL-RNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEK 81 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchH-HHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccC
Confidence 47889999999999999999998 4333444444443332 2111111111 1111111111 1
Q ss_pred cCCcEEEEcCCCCcCc
Q 001066 783 CQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 783 ~~psILfIDEID~L~~ 798 (1167)
....|||+||.++|..
T Consensus 82 ~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRT 97 (352)
T ss_pred CcCCEEEEehhHhhhh
Confidence 3458999999999986
No 428
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.57 E-value=0.0084 Score=65.53 Aligned_cols=81 Identities=21% Similarity=0.380 Sum_probs=50.9
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEecccc--cc-------------------------hhh--
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFARKGAD--CL-------------------------GKY-- 765 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l~~~~--ll-------------------------s~~-- 765 (1167)
|++....+||.||||+|||+++..++...... ...+-|++..... ++ ...
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 67888899999999999999999876554332 3334455442111 00 000
Q ss_pred --hchHHHHHHHHHHHHHhcCCcEEEEcCCCCc
Q 001066 766 --VGDAERQLRLLFQVAEKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 766 --~g~~e~~L~~lF~~A~~~~psILfIDEID~L 796 (1167)
.......+..+...+....+.+++||-+..|
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1123344455555556667899999999988
No 429
>PRK06620 hypothetical protein; Validated
Probab=96.56 E-value=0.0017 Score=71.02 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
++||||||+||||||.++++..
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 9999999999999999999976
No 430
>PHA02624 large T antigen; Provisional
Probab=96.56 E-value=0.0096 Score=73.25 Aligned_cols=120 Identities=17% Similarity=0.226 Sum_probs=66.7
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDG 795 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~ 795 (1167)
+++..+.+||+||||||||+++.+|+..++. ..+.++++..-. -|...-.....+.+||++-.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G-----~vlsVNsPt~ks------------~FwL~pl~D~~~~l~dD~t~ 489 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGG-----KSLNVNCPPDKL------------NFELGCAIDQFMVVFEDVKG 489 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCC-----eEEEeeCCcchh------------HHHhhhhhhceEEEeeeccc
Confidence 5567778999999999999999999999952 233344332111 12222222335788898753
Q ss_pred cCccc--CcccccchHHHHHHHHHHhhcc-cC------CCce-----EEEccCCCCCcCCcccCCCCCcccccccC
Q 001066 796 LAPCR--TRQQDQTHSSVVSTLLALMDGL-KS------RGSV-----VVIGATNRPEAVDPALRRPGRFDREIYFP 857 (1167)
Q Consensus 796 L~~~~--~~~~~~~~~~vl~~LL~lLd~l-~~------~~~V-----iVIaTTN~~d~Ld~aLlrpgRF~~~I~~~ 857 (1167)
-.... -+.+.-. .-+.-|.+.||+- .- ...+ -+|.|||. ..|+..|.- ||..+|.|.
T Consensus 490 ~~~~~~~Lp~G~~~--dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 490 QPADNKDLPSGQGM--NNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred cccccccCCccccc--chhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 32200 0111111 1123456666653 10 0000 12337775 356777776 888888875
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.55 E-value=0.028 Score=65.21 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=30.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK 757 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~ 757 (1167)
.+.-++|.||+|+||||++..||..+......+.++..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 456788999999999999999999887554555555444
No 432
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0078 Score=62.01 Aligned_cols=108 Identities=27% Similarity=0.354 Sum_probs=57.9
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc-------h---hh---hchHHHHHHHHHHHHHhc
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL-------G---KY---VGDAERQLRLLFQVAEKC 783 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll-------s---~~---~g~~e~~L~~lF~~A~~~ 783 (1167)
+.+...+.|.|++|+|||+|+++|+..+......+. ++..... . .| .... ...+..+..+-..
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~---~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~ 97 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL---IDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLL 97 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE---ECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhc
Confidence 455567899999999999999999887643222221 2111110 0 00 1111 2223334455556
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCc
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEA 839 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~ 839 (1167)
.|.++++||...=.. . .....+...|..+...+ ..+|.+|+..+.
T Consensus 98 ~~~i~ilDEp~~~lD-------~---~~~~~l~~~l~~~~~~~-~tii~~sh~~~~ 142 (157)
T cd00267 98 NPDLLLLDEPTSGLD-------P---ASRERLLELLRELAEEG-RTVIIVTHDPEL 142 (157)
T ss_pred CCCEEEEeCCCcCCC-------H---HHHHHHHHHHHHHHHCC-CEEEEEeCCHHH
Confidence 799999999764331 1 22334444444433332 344556665544
No 433
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.55 E-value=0.0075 Score=61.65 Aligned_cols=77 Identities=17% Similarity=0.333 Sum_probs=44.0
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCC
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEID 794 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID 794 (1167)
.+.+...+.|.||+|+|||||++.|+..+......+.+-......++..+.+ ...-+..+..+....|.+|++||-.
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~--G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG--GEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH--HHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3456677899999999999999999887542221111100000000111111 1223333455556789999999955
No 434
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.54 E-value=0.0025 Score=69.87 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=36.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhccc---ceEEEEeehhhHhhhccc
Q 001066 1106 SGFRVLISGSPGSGQRHLAACLLHSFIG---NVEIQKVDLATISQEGRG 1151 (1167)
Q Consensus 1106 ~rp~iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD~sell~kyiG 1151 (1167)
..| +++|||+|+|||||..||++++.. +..++-++..+..++|+-
T Consensus 34 ~~~-l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~ 81 (219)
T PF00308_consen 34 YNP-LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFAD 81 (219)
T ss_dssp SSE-EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHH
T ss_pred CCc-eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHH
Confidence 345 999999999999999999987631 367889999888887754
No 435
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.54 E-value=0.0026 Score=73.02 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLAT 1144 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~se 1144 (1167)
+|||||||+|||++|++|++.+ + .+++-++.++
T Consensus 46 lll~G~~G~GKT~la~~l~~~~-~-~~~~~i~~~~ 78 (316)
T PHA02544 46 LLHSPSPGTGKTTVAKALCNEV-G-AEVLFVNGSD 78 (316)
T ss_pred EEeeCcCCCCHHHHHHHHHHHh-C-ccceEeccCc
Confidence 4559999999999999999988 3 6777777665
No 436
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.53 E-value=0.009 Score=72.46 Aligned_cols=81 Identities=22% Similarity=0.412 Sum_probs=52.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh------hch--------HHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY------VGD--------AERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~------~g~--------~e~~L~~lF~~A~ 781 (1167)
|+.+..-+||.|+||+|||+|+..+|..+......+-|+.. .+..... ++- .+..+..+...+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~--EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSG--EESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEC--cCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 67777889999999999999999998877544333334332 2111110 000 0112345555666
Q ss_pred hcCCcEEEEcCCCCcCc
Q 001066 782 KCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~ 798 (1167)
...|.+|+||.|..+..
T Consensus 168 ~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 168 EENPQACVIDSIQTLYS 184 (454)
T ss_pred hcCCcEEEEecchhhcc
Confidence 67899999999998764
No 437
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.52 E-value=0.0065 Score=68.56 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=58.2
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe-ccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR-KGADC 761 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l-~~~~l 761 (1167)
.++++++-.....+.|++++.. ....++|.||+|+||||+++++...+..... .++.+ +..++
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~--~iitiEdp~E~ 120 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEK--NIITVEDPVEY 120 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCC--eEEEECCCcee
Confidence 3566665555566666555432 2235889999999999999999887754222 22322 11111
Q ss_pred ch------hhhchHHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 001066 762 LG------KYVGDAERQLRLLFQVAEKCQPSIIFFDEIDG 795 (1167)
Q Consensus 762 ls------~~~g~~e~~L~~lF~~A~~~~psILfIDEID~ 795 (1167)
.- .........+..++..+.+..|.+|+|+||-.
T Consensus 121 ~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 121 QIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred cCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 10 00111112355666677778999999999963
No 438
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.49 E-value=0.024 Score=61.96 Aligned_cols=76 Identities=12% Similarity=0.109 Sum_probs=41.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH--hhcC-------CCceEEE-----EecccccchhhhchHHHHHHHHHHH-HHhcCC
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGS--CARG-------DKRIAYF-----ARKGADCLGKYVGDAERQLRLLFQV-AEKCQP 785 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~--l~~~-------~~~i~~~-----~l~~~~lls~~~g~~e~~L~~lF~~-A~~~~p 785 (1167)
+.++|+||.|+|||++.+.|+.. +... ...+.++ .+...+.+......+...++.+... +....+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 66999999999999999999842 2111 1111111 1122222222233333333333322 223578
Q ss_pred cEEEEcCCCCc
Q 001066 786 SIIFFDEIDGL 796 (1167)
Q Consensus 786 sILfIDEID~L 796 (1167)
++|+|||+..-
T Consensus 110 slvllDE~~~g 120 (213)
T cd03281 110 SLVLIDEFGKG 120 (213)
T ss_pred cEEEeccccCC
Confidence 99999998643
No 439
>PRK08118 topology modulation protein; Reviewed
Probab=96.48 E-value=0.0044 Score=65.13 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=22.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|+|+||||+||||+|+.|+..++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999987
No 440
>PRK14531 adenylate kinase; Provisional
Probab=96.48 E-value=0.0024 Score=67.73 Aligned_cols=30 Identities=33% Similarity=0.526 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEe
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKV 1140 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisv 1140 (1167)
+|+|.||||+|||.+|+.||..+ | +..++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~-g-~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH-G-LRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-CCeEec
Confidence 59999999999999999999999 5 888877
No 441
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.47 E-value=0.0021 Score=81.78 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLA 1143 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~s 1143 (1167)
|.+|||||||||||+||++||+.+ +..|+.++.+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~--~~~f~~lna~ 86 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT--RAHFSSLNAV 86 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh--cCcceeehhh
Confidence 459999999999999999999988 3677777654
No 442
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.47 E-value=0.0029 Score=65.52 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=25.3
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+++..|+|+|+||||||++|+.||..++
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3566899999999999999999999986
No 443
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.019 Score=67.39 Aligned_cols=153 Identities=22% Similarity=0.344 Sum_probs=87.7
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhh--------------chHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYV--------------GDAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~--------------g~~e~~L~~lF~~A~ 781 (1167)
|+-+..-+||-|.||.|||||.-.+|..+.... .++++.+.+...... --.+..+..++..+.
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 455566688889999999999999998887543 555565554432211 114555788888888
Q ss_pred hcCCcEEEEcCCCCcCcccCcccccch---HHHHHHHHHHhhcccCCCceEEEccCCCCCcC-CcccCCCCCcccccccC
Q 001066 782 KCQPSIIFFDEIDGLAPCRTRQQDQTH---SSVVSTLLALMDGLKSRGSVVVIGATNRPEAV-DPALRRPGRFDREIYFP 857 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~~~~~~~~~~~---~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L-d~aLlrpgRF~~~I~~~ 857 (1167)
..+|.+++||-|.++........+..- ......|.++-+. .+-.+++++=.+....+ -|.++ .|-.+..++|.
T Consensus 166 ~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~--~~i~~fiVGHVTKeG~IAGPrvL-EHmVDtVlyFE 242 (456)
T COG1066 166 QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKT--KNIAIFIVGHVTKEGAIAGPRVL-EHMVDTVLYFE 242 (456)
T ss_pred hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHH--cCCeEEEEEEEcccccccCchhe-eeeeeEEEEEe
Confidence 899999999999999764322222222 2333334433331 12224444443333222 23333 23445555553
Q ss_pred CCCHHHHHHHHHHhhccC
Q 001066 858 LPSMEDRAAILSLHTERW 875 (1167)
Q Consensus 858 ~P~~eER~eIL~~~l~~~ 875 (1167)
-+......||+.....+
T Consensus 243 -Gd~~~~~RiLR~vKNRF 259 (456)
T COG1066 243 -GDRHSRYRILRSVKNRF 259 (456)
T ss_pred -ccCCCceeeeehhcccC
Confidence 23334455666554444
No 444
>PRK07261 topology modulation protein; Provisional
Probab=96.46 E-value=0.0056 Score=64.47 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=22.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|+|+|+||+||||||+.|+..++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998876
No 445
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.46 E-value=0.0026 Score=71.52 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=58.8
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG 763 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls 763 (1167)
+++++.-.....+.+.+++... +....++|+.|++|+||||++++++..+......+..+. +..++.-
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~-----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE-d~~E~~l 169 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSA-----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE-DPPELRL 169 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHC-----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE-SSS-S--
T ss_pred cHhhccCchhhHHHHHHHHhhc-----------cccceEEEEECCCccccchHHHHHhhhccccccceEEec-cccceee
Confidence 5666655555555666655442 123467999999999999999999988875522232222 1111110
Q ss_pred ------hh-hchHHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 001066 764 ------KY-VGDAERQLRLLFQVAEKCQPSIIFFDEIDG 795 (1167)
Q Consensus 764 ------~~-~g~~e~~L~~lF~~A~~~~psILfIDEID~ 795 (1167)
.+ .......+..++..+.+..|.+|+|.||-.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 170 PGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred cccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 00 011223456667777788999999999874
No 446
>PHA02774 E1; Provisional
Probab=96.44 E-value=0.0093 Score=73.09 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=26.0
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+.+..+.++|+||||||||++|.+|++.+.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345557899999999999999999999875
No 447
>PRK10867 signal recognition particle protein; Provisional
Probab=96.44 E-value=0.035 Score=66.86 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=50.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEecccccch--------h------h----hchHHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFARKGADCLG--------K------Y----VGDAERQLRLLFQV 779 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l~~~~lls--------~------~----~g~~e~~L~~lF~~ 779 (1167)
++.-|+|+|++|+||||++..+|..+... ...+.++..+...... . + ..........++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999887655 4455555554221100 0 0 01223334455566
Q ss_pred HHhcCCcEEEEcCCCCcC
Q 001066 780 AEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 780 A~~~~psILfIDEID~L~ 797 (1167)
++.....+|+||=..++.
T Consensus 179 a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHhcCCCEEEEeCCCCcc
Confidence 666677899999876553
No 448
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.43 E-value=0.00072 Score=53.12 Aligned_cols=26 Identities=8% Similarity=-0.107 Sum_probs=18.5
Q ss_pred CcceeccCCCCccccccCCCCCCCCC
Q 001066 460 PKRLIQDAGDSENEVYSGSSASEEPN 485 (1167)
Q Consensus 460 ~~~v~cd~c~~~vh~~c~g~~~~~~~ 485 (1167)
|++++|+.|++.||+.|||+...+..
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~ 27 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDG 27 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS
T ss_pred CceEEeCCCCCcCChhhCCcccCCCC
Confidence 78999999999999999999988765
No 449
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.16 Score=60.74 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh-cCCCceEEEEecc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA-RGDKRIAYFARKG 758 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~-~~~~~i~~~~l~~ 758 (1167)
+..++|.||+|+||||++..||.... .....+.++..+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 45688999999999999999997652 2233455555443
No 450
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.42 E-value=0.037 Score=66.38 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=48.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc------------ch-hhh-----chHHHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC------------LG-KYV-----GDAERQLRLLFQVA 780 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l------------ls-~~~-----g~~e~~L~~lF~~A 780 (1167)
++.-|+|+|++|+||||++..||..+......+.++..+.... .. .++ .+........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 3567889999999999999999998865544555555443210 00 000 11122233445555
Q ss_pred HhcCCcEEEEcCCCCc
Q 001066 781 EKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 781 ~~~~psILfIDEID~L 796 (1167)
+.....+||||=..++
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5556789999876654
No 451
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.42 E-value=0.012 Score=75.40 Aligned_cols=106 Identities=25% Similarity=0.391 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCC--CceEEEEecc--cccchhhhchHHHHHHHHHHHH----------HhcCCc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGD--KRIAYFARKG--ADCLGKYVGDAERQLRLLFQVA----------EKCQPS 786 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~--~~i~~~~l~~--~~lls~~~g~~e~~L~~lF~~A----------~~~~ps 786 (1167)
.-++|.|+||||||+++++|...+.... ..+.+..-.+ ..-+....|.....+..++... ......
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 3588999999999999999988776432 2222222111 1112222222222333333211 013457
Q ss_pred EEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC
Q 001066 787 IIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV 840 (1167)
Q Consensus 787 ILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L 840 (1167)
+|+|||+..+.. ..+..| +..+....++++||=.+....+
T Consensus 419 llIvDEaSMvd~-----------~~~~~L---l~~~~~~~rlilvGD~~QLpsV 458 (720)
T TIGR01448 419 LLIVDESSMMDT-----------WLALSL---LAALPDHARLLLVGDTDQLPSV 458 (720)
T ss_pred EEEEeccccCCH-----------HHHHHH---HHhCCCCCEEEEECccccccCC
Confidence 999999988753 333333 4445556678888866654433
No 452
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.41 E-value=0.0025 Score=64.08 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
|.++|+||+|||.+|+.||..| | +.+++.|
T Consensus 2 I~i~G~~GsGKst~a~~la~~~-~-~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL-G-LPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-Cceeccc
Confidence 7899999999999999999999 4 9999888
No 453
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.40 E-value=0.0052 Score=69.54 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcC
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARG 747 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~ 747 (1167)
.+++|.||+|+|||||++.++..+...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~ 138 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG 138 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC
Confidence 589999999999999999999887643
No 454
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.39 E-value=0.0021 Score=69.62 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI 1132 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~ 1132 (1167)
+||+|||||||||||++|+..|-
T Consensus 25 lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 25 LLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp EEEES-CCCTHHHHHHHHHHCS-
T ss_pred eEEECCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999773
No 455
>PRK13949 shikimate kinase; Provisional
Probab=96.38 E-value=0.0034 Score=66.08 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=30.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ky 1149 (1167)
|+|+||||+|||.||+.||+.| | +.|+..| .++...
T Consensus 4 I~liG~~GsGKstl~~~La~~l-~-~~~id~D--~~i~~~ 39 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALAREL-G-LSFIDLD--FFIENR 39 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-C-CCeeccc--HHHHHH
Confidence 8999999999999999999999 4 8888887 455433
No 456
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.0023 Score=77.83 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI 1132 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~ 1132 (1167)
.+|||||||||||.+|+++|+.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 389999999999999999999873
No 457
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.35 E-value=0.0032 Score=64.13 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ 1147 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ 1147 (1167)
++|+|+||+|||.+|+.|+..+ + ..+ ||...+..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~-~-~~~--i~~D~~~~ 35 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL-G-APF--IDGDDLHP 35 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc-C-CEE--EeCccccc
Confidence 7999999999999999999987 3 444 45555655
No 458
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.34 E-value=0.022 Score=61.31 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.6
Q ss_pred CCC-CcEEEEcCCCCcHHHHHHHHH
Q 001066 718 TPP-RGVLLHGHPGTGKTLVVRALI 741 (1167)
Q Consensus 718 ~~~-~~VLL~GPpGTGKTtLAraLA 741 (1167)
... +.++|+||.|+||||+.+.|+
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHH
Confidence 344 359999999999999999988
No 459
>PRK07261 topology modulation protein; Provisional
Probab=96.33 E-value=0.0037 Score=65.86 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
+|+++|+||+|||.||+.|+..+ + +.++.+|.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~-~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-N-CPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-C-CCeEecCC
Confidence 48999999999999999999988 3 88888874
No 460
>PRK13695 putative NTPase; Provisional
Probab=96.33 E-value=0.024 Score=59.50 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.++|+|++|+|||||++.|+..+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999988764
No 461
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.33 E-value=0.024 Score=59.55 Aligned_cols=29 Identities=24% Similarity=0.554 Sum_probs=24.5
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+.+...+.|.||+|+|||||++.|+..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 34556789999999999999999998753
No 462
>PRK00625 shikimate kinase; Provisional
Probab=96.33 E-value=0.0031 Score=66.81 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
|+|+|+||+|||.+|+.||+.| | +.|+.+|-
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l-~-~~~id~D~ 33 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL-S-LPFFDTDD 33 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CCEEEhhH
Confidence 8999999999999999999999 4 99998883
No 463
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.026 Score=59.28 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.1
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555679999999999999999999865
No 464
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.32 E-value=0.0038 Score=69.05 Aligned_cols=38 Identities=21% Similarity=0.488 Sum_probs=31.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGR 1150 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyi 1150 (1167)
+|+|.||||+|||.+|+.||+.+ | +.-|++-+||-..+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~-g---~~~is~gdllr~~~ 45 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE-N---LKHINMGNILREEI 45 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-C---CcEEECChHHHHHh
Confidence 49999999999999999999977 4 66666777876654
No 465
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.32 E-value=0.0024 Score=62.04 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|.||||||+|||+||+.||+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999877
No 466
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.31 E-value=0.0048 Score=74.71 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=36.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc---cceEEEEeehhhHhhhcccc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI---GNVEIQKVDLATISQEGRGD 1152 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~---G~L~fisvD~sell~kyiGe 1152 (1167)
++||||+|||||||+.||++.+. .+..++-+...+++++++..
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~ 189 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI 189 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH
Confidence 99999999999999999999662 12678889999999988754
No 467
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.28 E-value=0.014 Score=74.30 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=48.9
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc--------------cccchhhhchHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG--------------ADCLGKYVGDAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~--------------~~lls~~~g~~e~~L~~lF~~A~ 781 (1167)
|++....++|+||||+|||+|+..++.........+.|+.... ..++-......+..+..+-....
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 6778888999999999999999776554433323333332211 01110001112333333333344
Q ss_pred hcCCcEEEEcCCCCcCc
Q 001066 782 KCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~ 798 (1167)
...+.+|+||-|..|..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 55789999999998885
No 468
>PRK13948 shikimate kinase; Provisional
Probab=96.28 E-value=0.0038 Score=66.60 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=36.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
|+|.|++|+|||.+++.||+.| | ..|+..| .++.+..|. .+.+||+.
T Consensus 13 I~LiG~~GsGKSTvg~~La~~l-g-~~~iD~D--~~ie~~~g~---si~~if~~ 59 (182)
T PRK13948 13 VALAGFMGTGKSRIGWELSRAL-M-LHFIDTD--RYIERVTGK---SIPEIFRH 59 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-C-CCEEECC--HHHHHHHhC---CHHHHHHH
Confidence 9999999999999999999999 4 8888666 666666664 34455544
No 469
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0036 Score=77.38 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=33.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehh
Q 001066 1104 KGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLA 1143 (1167)
Q Consensus 1104 ~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~s 1143 (1167)
+.++|=+.|+||||||||-||+.||..+ | =.|+++-+-
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al-~-RkfvR~sLG 384 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKAL-G-RKFVRISLG 384 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHh-C-CCEEEEecC
Confidence 4567878999999999999999999999 4 789998654
No 470
>PLN02200 adenylate kinase family protein
Probab=96.27 E-value=0.0046 Score=68.58 Aligned_cols=38 Identities=18% Similarity=0.449 Sum_probs=32.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGR 1150 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyi 1150 (1167)
.|++.||||+|||.+|+.||..+ | +.-|.+.+|+-+++
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~-g---~~his~gdllR~~i 82 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETF-G---FKHLSAGDLLRREI 82 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C---CeEEEccHHHHHHH
Confidence 57889999999999999999977 4 56688888887654
No 471
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.27 E-value=0.0038 Score=67.00 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=36.7
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccC
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFP 857 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~ 857 (1167)
..+||+|||++.+.+.+...... . ...+..+.... ..++-||.+|..+..|++.++. .....+++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~----~-~~~~~~l~~hR-h~g~diiliTQ~~~~id~~ir~--lve~~~~~~ 144 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKK----V-PEIIEFLAQHR-HYGWDIILITQSPSQIDKFIRD--LVEYHYHCR 144 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T---------HHHHGGGGCC-CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEE
T ss_pred CCcEEEEECChhhcCCCcccccc----c-hHHHHHHHHhC-cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEE
Confidence 57899999999998755442111 1 12334444333 3356777799999999998876 665555543
No 472
>PRK04328 hypothetical protein; Provisional
Probab=96.26 E-value=0.026 Score=63.15 Aligned_cols=29 Identities=34% Similarity=0.603 Sum_probs=25.0
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
|+++...+||+|+||+|||+|+..++...
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~ 47 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNG 47 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67788889999999999999999876653
No 473
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.26 E-value=0.0079 Score=65.38 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=19.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
-+++.||+|||||+||-+.|..+-.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~ 45 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVK 45 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5888999999999999999876644
No 474
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.26 E-value=0.041 Score=61.00 Aligned_cols=150 Identities=10% Similarity=0.069 Sum_probs=97.6
Q ss_pred CCcEEEEcCCC-CcHHHHHHHHHHHhhcCC----CceEEEEeccccc---chhhhchHHHHHHHHHHHHH----hcCCcE
Q 001066 720 PRGVLLHGHPG-TGKTLVVRALIGSCARGD----KRIAYFARKGADC---LGKYVGDAERQLRLLFQVAE----KCQPSI 787 (1167)
Q Consensus 720 ~~~VLL~GPpG-TGKTtLAraLA~~l~~~~----~~i~~~~l~~~~l---ls~~~g~~e~~L~~lF~~A~----~~~psI 787 (1167)
....||.|..+ ++|..++..++..+.... ..-.++.+....- .+..+ .-..++.+...+. ....-|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEE
Confidence 46789999998 999999998887764321 1112222221100 00111 1233444444443 345579
Q ss_pred EEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHH
Q 001066 788 IFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAI 867 (1167)
Q Consensus 788 LfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eI 867 (1167)
++|+++|.+.. ...+.||..|+.. ..++++|..|..+..+.+.++| |+ +.+.|+.|....-.++
T Consensus 93 iII~~ae~mt~-----------~AANALLKtLEEP--P~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 93 AIIYSAELMNL-----------NAANSCLKILEDA--PKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNEL 156 (263)
T ss_pred EEEechHHhCH-----------HHHHHHHHhhcCC--CCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHH
Confidence 99999999875 6677899999863 4556777778888999999998 98 8899999988777777
Q ss_pred HHHhhccCCCCCChhHHHHHHHH
Q 001066 868 LSLHTERWPKPVTGSLLKWIAAR 890 (1167)
Q Consensus 868 L~~~l~~~~~~l~d~~L~~LA~~ 890 (1167)
+...+.... +...++.|.+.
T Consensus 157 ~~~~~~p~~---~~~~l~~i~~~ 176 (263)
T PRK06581 157 YSQFIQPIA---DNKTLDFINRF 176 (263)
T ss_pred HHHhccccc---ccHHHHHHHHH
Confidence 666554332 33445555554
No 475
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.045 Score=64.54 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 690 GLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 690 Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
+...+...+.+.+..-+..+..+ .+.++..++|+||+|+||||++..||..+......+.++..+.
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 34566677777665544333222 2345677899999999999999999988755555566666544
No 476
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.24 E-value=0.03 Score=61.16 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=30.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
|+++...++|.|+||+|||+++..++.........+-|+..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67778889999999999999999888765333333444443
No 477
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.0085 Score=66.37 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=23.7
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+...--|-|.||+|||||||.+.||....
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445588999999999999999998653
No 478
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.23 E-value=0.022 Score=59.63 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE
Q 001066 723 VLLHGHPGTGKTLVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 723 VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~ 754 (1167)
|.+|+++|.|||++|-++|........++.++
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67888999999999999998877665555554
No 479
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.23 E-value=0.0027 Score=76.00 Aligned_cols=33 Identities=27% Similarity=0.558 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
++|+||||||||+||++||..+.+.-.+.++++
T Consensus 197 iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~ 229 (459)
T PRK11331 197 IILQGPPGVGKTFVARRLAYLLTGEKAPQRVNM 229 (459)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcccceeeE
Confidence 899999999999999999998843223444444
No 480
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.02 Score=60.02 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=25.6
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.+.+...+.|.||+|+|||||++.|+..+.
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 345667799999999999999999998754
No 481
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.22 E-value=0.012 Score=67.62 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=47.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe-ccccc-------chhhhchHHHHHHHHHHHHHhcCCcEEEEc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR-KGADC-------LGKYVGDAERQLRLLFQVAEKCQPSIIFFD 791 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l-~~~~l-------ls~~~g~~e~~L~~lF~~A~~~~psILfID 791 (1167)
..++|+.|++|+||||++++++..+........++.+ +..++ +..........+..++..+.+..|.+|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4689999999999999999999887542111112211 11111 100001111146677788888899999999
Q ss_pred CCC
Q 001066 792 EID 794 (1167)
Q Consensus 792 EID 794 (1167)
||-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 986
No 482
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.22 E-value=0.045 Score=57.21 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=27.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK 757 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~ 757 (1167)
.+++.|+||+|||+++..+|..+......+.++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 368899999999999999998876554445555543
No 483
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.21 E-value=0.0052 Score=68.55 Aligned_cols=89 Identities=24% Similarity=0.373 Sum_probs=55.5
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHh-hcCCCceEEEEecccccch-----hhhchHHHHHHHHHH--------HHHhc
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSC-ARGDKRIAYFARKGADCLG-----KYVGDAERQLRLLFQ--------VAEKC 783 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l-~~~~~~i~~~~l~~~~lls-----~~~g~~e~~L~~lF~--------~A~~~ 783 (1167)
....++||.||.|.||+.||+.|...- .++...-.|+.++|..+-+ ..+|. ++..|. ..+..
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh----vkgaftga~~~r~gllrsa 281 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH----VKGAFTGARESREGLLRSA 281 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh----hccccccchhhhhhhhccC
Confidence 445679999999999999999885432 2233344677777766543 22222 222222 12234
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG 821 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~ 821 (1167)
...+||||||..|.. .-+..|+..|+.
T Consensus 282 dggmlfldeigelga-----------deqamllkaiee 308 (531)
T COG4650 282 DGGMLFLDEIGELGA-----------DEQAMLLKAIEE 308 (531)
T ss_pred CCceEehHhhhhcCc-----------cHHHHHHHHHHh
Confidence 568999999998875 233456666654
No 484
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.21 E-value=0.014 Score=58.63 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 001066 723 VLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 723 VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
|+|.||||+||||+|+.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999998876
No 485
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.19 E-value=0.0027 Score=69.73 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=25.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLA 1143 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~s 1143 (1167)
.+||||+||+|||.+|+.++. +.-++.+|++
T Consensus 14 ~~liyG~~G~GKtt~a~~~~~----~~~~~~~d~~ 44 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYLPG----KTLVLSFDMS 44 (220)
T ss_pred EEEEECCCCCCHHHHHHhcCC----CCEEEecccc
Confidence 389999999999999999985 3456666663
No 486
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.18 E-value=0.035 Score=57.79 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
+..++|+||.|+|||+++++++-.+..
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357889999999999999998666543
No 487
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.17 E-value=0.0082 Score=63.13 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|-|+|.||||+|||.+|+.||..|
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 448999999999999999999977
No 488
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.17 E-value=0.0037 Score=64.07 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=31.5
Q ss_pred EEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcc
Q 001066 1112 ISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGR 1150 (1167)
Q Consensus 1112 f~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyi 1150 (1167)
+.||||+|||.+|+.||+.+ | |..|++.+||.+++
T Consensus 1 i~G~PgsGK~t~~~~la~~~-~---~~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY-G---LVHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH-T---SEEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc-C---cceechHHHHHHHH
Confidence 57999999999999999988 4 78888999999887
No 489
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.16 E-value=0.0062 Score=70.83 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI 1132 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~ 1132 (1167)
+|||||||+|||.+|+++|+.+.
T Consensus 39 ~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999873
No 490
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.15 E-value=0.025 Score=67.44 Aligned_cols=247 Identities=19% Similarity=0.212 Sum_probs=122.5
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhc
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVG 767 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g 767 (1167)
|.|.+++|+.|.-++.-..... .-..+.+.-.-+|+|.|.||+.|+.|.++|.+...+. .|..-.+++-+ |
T Consensus 344 IyGheDVKKaLLLlLVGgvd~~-~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRg----vYTTGrGSSGV----G 414 (721)
T KOG0482|consen 344 IYGHEDVKKALLLLLVGGVDKS-PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRG----VYTTGRGSSGV----G 414 (721)
T ss_pred hccchHHHHHHHHHhhCCCCCC-CCCCceeecceeEEecCCCchhHHHHHHHHHhcCccc----ceecCCCCCcc----c
Confidence 5899999999987775432210 0011223344579999999999999999997754322 11111111111 1
Q ss_pred hHHHHHHH------HHH--HHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh--hcc--cCCCceEEEccCC
Q 001066 768 DAERQLRL------LFQ--VAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM--DGL--KSRGSVVVIGATN 835 (1167)
Q Consensus 768 ~~e~~L~~------lF~--~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL--d~l--~~~~~ViVIaTTN 835 (1167)
-....++. +++ ..-....+|-.|||||.+..... ..-.++..+--..| .++ .-+.+.-|+|++|
T Consensus 415 LTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR----tAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 415 LTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR----TAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred cchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh----HHHHHHHHhhhhhhhhhccccchhhhHHhhhhcC
Confidence 11000000 000 00012457899999999874210 00011111100011 111 1134567788887
Q ss_pred CCC-------------cCCcccCCCCCccccccc-CCCCHHHHHHHHHHhhc----cCCCC-----CChhHHHH---HHH
Q 001066 836 RPE-------------AVDPALRRPGRFDREIYF-PLPSMEDRAAILSLHTE----RWPKP-----VTGSLLKW---IAA 889 (1167)
Q Consensus 836 ~~d-------------~Ld~aLlrpgRF~~~I~~-~~P~~eER~eIL~~~l~----~~~~~-----l~d~~L~~---LA~ 889 (1167)
... .|+.+|++ ||+..+-+ ..|+.+.-..+-++..- ..... ++...+.. +++
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak 568 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAK 568 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHh
Confidence 643 47899999 99766544 45665554444443321 11111 22222222 344
Q ss_pred HccCCcHHHHHHHHHHHHHHHHHcC--------CChHHHHHHH---HHHhhccccccCCccccCHHHHHHHhhcCC
Q 001066 890 RTAGFAGADLQALCTQAAIIALKRN--------FPLQEILSAA---AEKAFCSKRVTLPSFAVEERDWLEALSCSP 954 (1167)
Q Consensus 890 ~t~G~s~aDL~~Lv~~A~~~A~~R~--------i~~~di~~~~---e~~~~~~~~~~l~~i~It~~D~~~AL~~~~ 954 (1167)
...-..+.+|..-+..|.....+.. .+.+.++... .+.+..+ -+-.+...|+.+||.-+.
T Consensus 569 ~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLR-----ls~~V~~~DV~EALRLme 639 (721)
T KOG0482|consen 569 RKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLR-----LSDSVEEDDVNEALRLME 639 (721)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhh-----hccccchhhHHHHHHHHH
Confidence 4555677777766665544433322 1223332221 1111111 134577889999988664
No 491
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.015 Score=65.04 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+.+..-+-|.||.|+|||||+++|...+.
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34445678999999999999999988543
No 492
>PRK08727 hypothetical protein; Validated
Probab=96.14 E-value=0.0035 Score=69.27 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc-ceEEEEeehhhHhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIG-NVEIQKVDLATISQ 1147 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G-~L~fisvD~sell~ 1147 (1167)
++|||||||||||||.++++.+.. ....+-+.+.++..
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~ 82 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG 82 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence 999999999999999999887531 02334455555443
No 493
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.13 E-value=0.055 Score=60.28 Aligned_cols=137 Identities=18% Similarity=0.226 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhh-----------chHHHHHHH----HHHHHH-
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYV-----------GDAERQLRL----LFQVAE- 781 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~-----------g~~e~~L~~----lF~~A~- 781 (1167)
+.+-.+++.|++|||||+++..|...+......+.++.-........|+ ...+..+.. +-+.+.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 4456799999999999999999987776544322222221111111111 001111111 111111
Q ss_pred --h---cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCccccccc
Q 001066 782 --K---CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYF 856 (1167)
Q Consensus 782 --~---~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~ 856 (1167)
. ..+.+|+||++..- ......+..++ ... ..-++.+|..+...-.|++.++. -.+..+-+
T Consensus 91 ~~~~k~~~~~LiIlDD~~~~---------~~k~~~l~~~~---~~g-RH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~ 155 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGDK---------KLKSKILRQFF---NNG-RHYNISIIFLSQSYFHLPPNIRS--NIDYFIIF 155 (241)
T ss_pred hcccCCCCCeEEEEeCCCCc---------hhhhHHHHHHH---hcc-cccceEEEEEeeecccCCHHHhh--cceEEEEe
Confidence 1 23679999997421 01122333333 211 12346777788888888998876 55555555
Q ss_pred CCCCHHHHHHHHHH
Q 001066 857 PLPSMEDRAAILSL 870 (1167)
Q Consensus 857 ~~P~~eER~eIL~~ 870 (1167)
+ .+..++.-|++.
T Consensus 156 ~-~s~~dl~~i~~~ 168 (241)
T PF04665_consen 156 N-NSKRDLENIYRN 168 (241)
T ss_pred c-CcHHHHHHHHHh
Confidence 4 455555555544
No 494
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.12 E-value=0.0069 Score=62.66 Aligned_cols=30 Identities=30% Similarity=0.585 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
|++.||||+|||.+|++|++.+ | ..+++.|
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-~-~~~v~~D 30 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-G-AKFIEGD 30 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-C-CeEEeCc
Confidence 4789999999999999999988 4 5555444
No 495
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.11 E-value=0.017 Score=62.54 Aligned_cols=111 Identities=26% Similarity=0.310 Sum_probs=59.1
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDG 795 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~ 795 (1167)
|.....-++|.|+.|+|||++.+.|+.... .-...... ..+ .+..+ ...-||.|||++.
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~~---------~d~~~~~~---~kd---~~~~l------~~~~iveldEl~~ 106 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEYF---------SDSINDFD---DKD---FLEQL------QGKWIVELDELDG 106 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHhc---------cCccccCC---CcH---HHHHH------HHhHheeHHHHhh
Confidence 444445688999999999999999955421 11100000 011 11111 1124789999998
Q ss_pred cCcccCcccccchHHHHHHHHHH-hhccc---------CCCceEEEccCCCCCcC-CcccCCCCCcccccccCC
Q 001066 796 LAPCRTRQQDQTHSSVVSTLLAL-MDGLK---------SRGSVVVIGATNRPEAV-DPALRRPGRFDREIYFPL 858 (1167)
Q Consensus 796 L~~~~~~~~~~~~~~vl~~LL~l-Ld~l~---------~~~~ViVIaTTN~~d~L-d~aLlrpgRF~~~I~~~~ 858 (1167)
+..+ ....+..|+.. .+.+. -....++|||||..+-| |+.--| || ..|.+..
T Consensus 107 ~~k~--------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 107 LSKK--------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred cchh--------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 7531 11222222221 11111 11247789999998755 455555 77 5555543
No 496
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.11 E-value=0.031 Score=60.26 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.5
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHH
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIG 742 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~ 742 (1167)
....-++|+||.|+|||++.+.|+.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3445699999999999999999984
No 497
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.09 E-value=0.029 Score=59.73 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 001066 723 VLLHGHPGTGKTLVVRALIG 742 (1167)
Q Consensus 723 VLL~GPpGTGKTtLAraLA~ 742 (1167)
++|+||.|+|||++++.|+.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 498
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.09 E-value=0.036 Score=66.74 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh--cCCCceEEEEecc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA--RGDKRIAYFARKG 758 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~--~~~~~i~~~~l~~ 758 (1167)
...++|.||+|+||||++..||..+. .....+.++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 45789999999999999999998775 3345566666654
No 499
>PTZ00202 tuzin; Provisional
Probab=96.05 E-value=0.75 Score=55.34 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=41.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
...+.+|.+.....|..++.. .....+.-+.|+|++|+|||++++.++..+.
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345679999999999888753 1233445788999999999999999997765
No 500
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.05 E-value=0.0061 Score=64.94 Aligned_cols=75 Identities=24% Similarity=0.395 Sum_probs=46.0
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc-------chh------hhchHHHHHHHHHHHHHhcC
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC-------LGK------YVGDAERQLRLLFQVAEKCQ 784 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l-------ls~------~~g~~e~~L~~lF~~A~~~~ 784 (1167)
.....++|.||+|+||||++++|+..+.... .+..+ -+...+ ... ..+.....+..++..+.+..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~-~~i~i-ed~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~ 100 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDE-RIITI-EDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCC-CEEEE-CCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccC
Confidence 3456799999999999999999998765322 11111 011010 000 00111233566677777788
Q ss_pred CcEEEEcCCC
Q 001066 785 PSIIFFDEID 794 (1167)
Q Consensus 785 psILfIDEID 794 (1167)
|.+|++.||-
T Consensus 101 pd~i~igEir 110 (186)
T cd01130 101 PDRIIVGEVR 110 (186)
T ss_pred CCEEEEEccC
Confidence 9999999985
Done!